LOCUS       DASGAC010000001        53095 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.001, whole genome shotgun sequence.
ACCESSION   DASGAC010000001 DASGAC010000000
VERSION     DASGAC010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 53095)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 53095)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..53095
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.001"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..221
                     /locus_tag="U1335_000001"
     CDS             <1..221
                     /locus_tag="U1335_000001"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230529.1"
                     /translation="QYFGFALNLSQQIAYLFGEDELFVGEGKEISEEVQIRIIAYIGV
                     MFGAGGSAVLLNKVSKTVGANIGKKVAM"
     gene            270..533
                     /locus_tag="U1335_000002"
     CDS             270..533
                     /locus_tag="U1335_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose transporter subunit IIB"
                     /protein_id="HEM5230530.1"
                     /translation="MIGVKIIKKTVEKTIANAVPILGGLISGGLTYFTFQPMGGILAD
                     TFVKKINGDFDGELELTEAFKASLEEEKELGIIEAEFTEASES"
     gene            613..1956
                     /locus_tag="U1335_000003"
     CDS             613..1956
                     /locus_tag="U1335_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007517532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5230531.1"
                     /translation="MKFTDMKLKPYIQEALKEINFVQPTEVQEKLIPVVLSGRDLIGE
                     SKTGSGKTHTFLIPIFQKLNEELDQVQAVITAPSRELATQIYQAARQLASHSDIEVRV
                     TNYVGGTDKNRQIDKLQASQPHIVVGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLD
                     MGFLETVDKIAGSLPKDLQFMVFSATIPQKLQPFLKKYLSNPVMEQIKTHTVISDTIE
                     NWLISTKGRDRNAQILEVTKLMQPYLAMIFVNTKTRADELHSYLTANGLRVAKIHGDI
                     PPRERKRMMNQVKNLDYQYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTG
                     RNGLSGIAITLYQPSDDADIRELEKLNIKFLPKEMKNGEFVDTYDRDRRANREKSREK
                     LDLEMIGLVKKKKKKVKPGYKKKIQWAVDEKRRKTKRVEARAKGRAERKAKRQTF"
     gene            1974..2198
                     /locus_tag="U1335_000004"
     CDS             1974..2198
                     /locus_tag="U1335_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4059 family protein"
                     /protein_id="HEM5230532.1"
                     /translation="MLQNILSFYLQGLLIASLLIITSSLVWFIWRATKGVDKTLQERQ
                     DFLFDLLMINVMTIPIAAFGVVGILLMFKA"
     gene            2212..3129
                     /gene="trxB"
                     /locus_tag="U1335_000005"
     CDS             2212..3129
                     /gene="trxB"
                     /locus_tag="U1335_000005"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEM5230533.1"
                     /translation="MYDTVVIGAGPAGMTAALYAGRSNLKVALLERGIYGGQMNNTAE
                     IENYPGYDHISGPALAEKMFEPLEKFGVDHIFGTLVRIEEEGQIKKVITEDGVLETKT
                     VVLAMGAKHRLLGIPGEDTYNSRGVSYCAVCDGAFFRGQKLLVVGGGDSAVEEALFLT
                     QFAESVTIVHRRDQLRAQKVIQDRAFANEKINFIWDSVVEEIKGDDLRVQSVVIKNVK
                     TEEVSELDFGGVFIYVGLDPMTDTVADLGITDEAGWVITNEKMETTQSGIYAIGDIRQ
                     NQLRQIATAVGNGAVAGQEVYNYITELAE"
     gene            3139..3678
                     /locus_tag="U1335_000006"
     CDS             3139..3678
                     /locus_tag="U1335_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HEM5230534.1"
                     /translation="MFHIYDIQKNPDGISFEKTLDLQEELQARNSEVLGLSPVQVSGN
                     VRFESGFFFLDYQMTYDITLASSRSLKPVVLHEVQNVNELFVANEAVLKEQDLIDEDM
                     VLVVEDDHIVLDESVADNILLAIPIKVLTPEEEAGQELPSGQAWALMTEEDFQQKAQE
                     KKEANSPFAQLQGLFGDED"
     gene            3775..5202
                     /gene="gndA"
                     /locus_tag="U1335_000007"
     CDS             3775..5202
                     /gene="gndA"
                     /locus_tag="U1335_000007"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HEM5230535.1"
                     /translation="MTKANFGVVGMAVMGRNLALNVESRGYSVAIYNRSADKTEDVVA
                     SNPGKNLVPSYDVESFVASIEKPRRIMLMVQAGPGTDATIQALLPHLDEGDILIDGGN
                     TFYEDTIRRSKELANSGINFIGTGVSGGEKGALEGPSIMPGGQKEAYELVADVLEEIS
                     AKAPEDGAPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAESYDLMQHLLGLSVDEMAD
                     IFTEWNKGELDSYLIEITADILKRKDDQGQDGPIVDYIMDAAGNKGTGKWTSQSSLDL
                     GVPLSLITESVFARYISTYKDERVAASKVLPKPAPFAYEGDKAELVEKIRQALYFSKI
                     MSYAQGFAQLRVASKENNWNLPFGEIAKIWRAGCIIRARFLQKITDAYGRDEDLANLL
                     LDEYFLDVTAKYQQAVRDVVALAVQAGVPVPTFSAAITYFDSYRAENLPANLIQAQRD
                     YFGAHTYNRKDKEGIFHYDWYSESK"
     gene            5284..5973
                     /locus_tag="U1335_000008"
     CDS             5284..5973
                     /locus_tag="U1335_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEM5230536.1"
                     /translation="MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHE
                     TDFDLILMSFQLSDMSSKELATELLAIKPATVMIVVVEPTEVSQYGEEVLSYAVSYVV
                     KPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
                     REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIK
                     TVRGVGYAMRD"
     gene            6443..7573
                     /locus_tag="U1335_000009"
     CDS             6443..7573
                     /locus_tag="U1335_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM5230537.1"
                     /translation="MNTSFKEKVILILLSGATLLAVLNWSSIYGAIQQLLGSMNSLFI
                     GAIFAFILNVPMKKLEDQFEKISFLKKSKRSLAIVGVLIGFALIVTGLVVIVLPTLVT
                     TVSELVSVSSTAIPKSVNALTNFLESNGLLSGQIGDQIASFLDQLKNLTLISSLVTPI
                     LSGLVSNVTGIFSNTMTLIMAFFFTLAILGSKEHLQAMTRKFLQATLPEKAIRVVNYI
                     GEVIVDTYDRFLMSQIVEACIIGTLVFVSYSLSGIPYASMAGILAGVLSFVPYIGPFS
                     ACLISALFVAVQNPLLALWSIVLFQILQLIEGNVIYPRVVGQSVGLPTLFTLAAALIG
                     GNLFGLLGMVFFTPIFAVVYRLVREWVASRLKKQDELLVESE"
     gene            7645..8136
                     /gene="nrdR"
                     /locus_tag="U1335_000010"
     CDS             7645..8136
                     /gene="nrdR"
                     /locus_tag="U1335_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor NrdR"
                     /protein_id="HEM5230538.1"
                     /translation="MRCPKCQSLKSSVIDSRQAEDGNTIRRRRSCDQCGQRFTTYERI
                     EEKTLVVVKKDGTREQFSREKIFNGIIRSAQKRPVSTDDIDEVVNRIEQKVRAQGDSE
                     IESDVIGNLVMEELVELDEITYVRFASVYRSFKDVGELENLLKQMISKGSKVKLGKKD
                     ETK"
     gene            8123..9274
                     /locus_tag="U1335_000011"
     CDS             8123..9274
                     /locus_tag="U1335_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation/membrane attachment
                     protein"
                     /protein_id="HEM5230539.1"
                     /translation="MKPNDLFAYIKISPFTPDIVSLSQCYQPIIGFDALALYYYFYSF
                     ADQGQGRYKWTVILNHMDFGMNRLEKALDVLTAMGLLELYRADELTGLALQAPLTVKS
                     FLAKPLYKNLLVRKIGESSMENLLVHLPNQEQNISKTFSQVFTMDGQAPVVFEPKHDF
                     DWSAFKALMAKDKLLFQDEAEDIIALSYIAEQAGWTWLETYRQAKATAIGQTISTKRL
                     QQSRQSLPAESANLTAQEQAIVREAKSKSSLTFLSFIKEQRKAAVTATERKCLTDLAN
                     LGLLDEVINVLVLYTFNKVDSANLNEKYAMKLGNDFSYKGIGSAEAAVLYLRELKTGQ
                     AVTKPSQPQKSNVPEWSKEEVQQGQTQEGQAKLAALYRELEEMENKGGS"
     gene            9274..10173
                     /gene="dnaI"
                     /locus_tag="U1335_000012"
     CDS             9274..10173
                     /gene="dnaI"
                     /locus_tag="U1335_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein DnaI"
                     /protein_id="HEM5230540.1"
                     /translation="MKSVQDRLSQTTNPSPKSYQQLYQEIVSDPEVAAFIKKEGLTQQ
                     EITLSISKFLEYISQRDLFVKQDESYIAKGYQPVLVMNEGYADVSYLETEELVEYRRL
                     EAIKNRIQLINMPASLKNVTVADIDKSDENRVEVMLAIADFVKRFEEKPKGLYIYGNF
                     GIGKSYLMAYLANLLSKTHLQSTTMLHYPTFVVDIKNAIKDGSVKERIDEIKLAQVLV
                     LDDIGAEQHSPWVRDDVLQVILQYRMQENLPTFFTSNFSFDDLERHFASGKSGDETWQ
                     AKRVMERIRYLARDLHLKGNNRR"
     gene            10170..10883
                     /locus_tag="U1335_000013"
     CDS             10170..10883
                     /locus_tag="U1335_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003041432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent oxidoreductase"
                     /protein_id="HEM5230541.1"
                     /translation="MNETIDLMLNHTSVRRFTEEPIEAEHLQAIISAGRAASSWKNFQ
                     SYSIIVVQSEEKKQDLYDLVPQPAILQAQAILVFVGDHNRASKAAQLHGSDFDAKGTE
                     NLLISSVDASLAGQNALLAAESLGYGGVFIGMIRHKALAIAELFNLPDYTYPIFCIAL
                     GRPAQNHPVKPRLASETIVFQEEYVEQGVEVIQAYDQVQSDYAGVRQTETWSERMVAQ
                     FGQPEQPETRAVLEKNKLL"
     gene            11120..12430
                     /gene="der"
                     /locus_tag="U1335_000014"
     CDS             11120..12430
                     /gene="der"
                     /locus_tag="U1335_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEM5230542.1"
                     /translation="MALPTIAIVGRPNVGKSTLFNRIAGERISIVEDVEGVTRDRIYA
                     TGEWLNRKFSLIDTGGIDDVDAPFMEQIKHQAEIAMDEADVIVFVVSGKEGVTDADEY
                     VSRILYKTNKPVILVVNKVDNPEMRNDIYDFYSLGLGDPYPVSSVHGIGTGDVLDAII
                     ENLPAQEAEENPDIIKFSLIGRPNVGKSSLINAILGEERVIASPVAGTTRDAIDTHFT
                     DPEGQEFTMIDTAGMRKSGKVYENTEKYSVMRAMRAIERSDVILMVINAEEGIREYDK
                     RIAGFAHEAGKGMIIVVNKWDTLEKDNHTMKQWEDDIRDQFQYLSYAPIIFVSALTKQ
                     RLHKLPEIIKAISESQNTRIPSAVLNDVIMDAIAINPTPTDKGKRLKIFYATQVATKP
                     PTFVVFVNEEELMHFSYMRFLENQIRKAFVFEGTPIHLIARKRK"
     gene            12763..13101
                     /locus_tag="U1335_000015"
     CDS             12763..13101
                     /locus_tag="U1335_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5230543.1"
                     /translation="MVALPIWRLFFLLLSISAFYFIFYEDSQYKPFGLRYWLGLVACI
                     WLNFVTLASYFIAFTGGSIMVYNQYKQPLVVIFLFCLFVASMLTLLSFKAIKMMIRRT
                     KYYRQVRKEV"
     gene            13103..13411
                     /locus_tag="U1335_000016"
     CDS             13103..13411
                     /locus_tag="U1335_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230544.1"
                     /translation="MEFFGELLVEFLTGLADFDEKKHPPFGIRYWLGWLGVLIHVLLL
                     ALLTCVTVFFFKFFLVGKGLINVVVAVVFLLFTLFWLWKSRKTILKMCQATIYYLAIH
                     "
     gene            13550..16642
                     /locus_tag="U1335_000017"
     CDS             13550..16642
                     /locus_tag="U1335_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SNF2 helicase associated domain-containing
                     protein"
                     /protein_id="HEM5230545.1"
                     /translation="MGRMMPGRIRQEGIDLYEAGKLTVLHSENGKMVLDIAGERFTYG
                     DADSDLQCSCQLFQSKGYCQHLAATEYFLKNDASGKDMKQSLKEDGEQHKETVRRTYF
                     GGLFLDEILRPEPELGLKYQLSVEGSLLPYDRQIDWTLKITRLPDTRSYIVRDIGAFL
                     RIVKANGHYQIGKNYYEQVTYENFDEPSQALLDFLWALVPEKVGIDSDILTHFGRHFR
                     LPQAYFEEGLELLNQLEHFNFSYQQQSYSSLMVLPLTGEEGLYHFEVTVHTQMIEMVI
                     HEKTVRPLFHGRYLLVNGTVYSVNRHQEHLIYQISELVPTESGLRKVQVDFPDQNRLA
                     LSLLDLQTIGTVKAPKRFIIHDFKPEFHIQMEANESLSLQLVLDFDGRQVRSEEDLAL
                     LPFASHFQHLERIYQAIRLAGFRGTYHAQRAALSQQELYPFFQQQLSILQKMGQVHLV
                     ERLQALYIEAKPQLEIVRNGSLLDISFDLSGIEQSEIDQAITALLNQEDHYTSPSGKV
                     FVFDEETKKISQTLIYLRARHGREGQVQVHALAGYQLAQSLSQFNQVSFSKEFEEMAS
                     YLAQPDLFPLPAAEVTTSLRDYQQTGLKWLTMLDTYGFGGILADDMGLGKTLQTIAFL
                     SSRMTKDSKVLILAPSSLIYNWLDECKRFAPSLDVAVVHGNKEQREEIIANGHQVLVT
                     SYPSFRQDVALYRQERFDYLILDEAQVMKNAQSKIAQLLREFEVGNCFALSGTPIENH
                     LTELWSIFQIVLPGLLPGKQDFGKLAAKDIARTIQPFVLRRHKEDVLQELPDLIEVNV
                     LNELTDEQKAIYLAQLQQMRTQIAGADDAQINRSKIEILSGITRLRQICDTPSLFMEE
                     FSGESGKLNSLKELLLQLKEGEHRVLIFSQFRNMLEKIEEQLVEIGMTSYTLTGSTPA
                     NQRQEMTQAFNAGSRDAFLISLKAGGVGLNLTGADTVILVDLWWNPAVEAQAISRAHR
                     MGQTEKVECYRLITRGTIEEKIQELQENKKNLVKTVLDGNESRANLTVEDIREILGIE
                     "
     gene            16721..17383
                     /locus_tag="U1335_000018"
     CDS             16721..17383
                     /locus_tag="U1335_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230546.1"
                     /translation="MIRHEKRFPLVADDEVLVGENPIMSLYDESDLISNIRGPYQEKE
                     FSWSTDSQRVASAKPVAQTEDELLPPLFEAKPSHYSRKERLQQLTKTKPSPVKTQGQL
                     AREQAREDLKKKRSATYLRDEKPAPAKVVVKPPVVSTTESKAGRLTRLADNLRQTDYI
                     LADMPAVYSLKKEDREQEQVIKKNSYDFLRKSQVYNYPERRQQRDRQVAQELNLTHIE
                     EG"
     gene            17385..18716
                     /locus_tag="U1335_000019"
     CDS             17385..18716
                     /locus_tag="U1335_000019"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015511317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEM5230547.1"
                     /translation="MTKTYHFIGIKGSGMSALALMLHQMGHKVQGSDVEKYYFTQRGL
                     EQAGIQILPFDEKNITADVELIAGNAFRPDNNVEIAYADAQGYTYKRYHEFLGEFMKG
                     FTSLGVAGAHGKTSTTGLLAHVMRNITDTSFLIGDGTGRGSANAQYFVFESDEYERHF
                     APYHPEYSIITNIDFDHPDYFTSLEDVFNAFNDYAKQVKKALFVFGEDEQLRRITANA
                     PIYYYGLEDNNDFVAYDLKPSTSGSQFKVHHGEEELGEFQIPTFGKHNVMNATAVIAN
                     LYIAGFDLQLVAEHLKTFGGVKRRFTEKIVNDTVIIDDFAHHPTEIIATIDAARQKYP
                     SKELVAIFQPHTFTRTIALLDEFADALNGADAVYLAQIYGSARETDNGQVKVEDLAAK
                     INKKGGLVTVENTSPLLDHDNAVYVFMGAGDIQSYEYSFERLLSNLTNNVQ"
     gene            18772..19257
                     /locus_tag="U1335_000020"
     CDS             18772..19257
                     /locus_tag="U1335_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5230548.1"
                     /translation="MEIRFATPSDLEQVVLIENANFSKEERIAESVLAIYLNALSKTC
                     LIMEHDGEIAGYLLSCPSVSQTVTDDIFYLTESDMPTGSHLAIASLSVADTYKGQGVG
                     TLLLAAIKEVALAGGFEGIALTCKEYLIGYYEMNQFEDFGPSLSQFGGQMWSDMYWKA
                     L"
     gene            19329..21146
                     /gene="mltG"
                     /locus_tag="U1335_000021"
     CDS             19329..21146
                     /gene="mltG"
                     /locus_tag="U1335_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEM5230549.1"
                     /translation="MTKDTNEKNTQSSSFRDQILRDLEELKVKRLAEQSADVLVDKRN
                     EIINELQPSFAEEKAPHRETEIVKVEGIAFPDSYLPEEQQESEVMTESIEEPTSETLA
                     TPETFVIEKEVISSSVPQDTVERNLEELRNLVAANTVEFDEAPSSSLVSEPVESVLSE
                     KSSLEDTFLEFPTEDVSAVTGDTEVISLEGTIVATKAVDPVAATEEQMQPTQSRRSSS
                     HRANKQRRKKQDNAAKRIVSVIMSIVVVAVLVTGVTGYMWVKSNLEPVNAKATEAIQV
                     EIPEGSSTLEIGKILVDNKLIKNATIFNYYSKIKSYNNFQSGFYNLKQNMSVDDIAKA
                     LQESGTPTAQKEAAGKILIVEGYTLTQIAQAITDNTKTEDKNDKTPFTTEQFMATVTN
                     QDFINRMVATYPKLFASLPAADSGVIYQLEGYLFPAVYEYSDETTIEELVEQMIVAMD
                     NRLQPYYETIAAKNLTVNEVLTLASLVEKESSTDEDRRNIASVFFNRLNAAIPLQSNI
                     AILYAQGKLGQETTLAEDAAIDTSIESPYNIYWTPGLMPGPVDSPSLSAIEAVINANT
                     TDYLYFVADVTTGSVYFTNNIDEHNQNVAKYVNAHLDNE"
     gene            21220..21702
                     /gene="greA"
                     /locus_tag="U1335_000022"
     CDS             21220..21702
                     /gene="greA"
                     /locus_tag="U1335_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEM5230550.1"
                     /translation="MAEKTYPMTLEEKEKLEKELEELKLVRRPEIVERIKIARSYGDL
                     SENSEYEAAKDEQAFVEGQISTIETKIRYAEIVNSDAVAADEVAIGKTVTVQEVGETE
                     EEVYHIVGAAGADAFANKISNESPIGHALIGKKTGDVATIETPAGSYDVKILKVEKTK
                     "
     gene            complement(21901..22812)
                     /gene="yidC"
                     /locus_tag="U1335_000023"
     CDS             complement(21901..22812)
                     /gene="yidC"
                     /locus_tag="U1335_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002897015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEM5230551.1"
                     /translation="MKNKRLLILSGMALSTLLFLSGCVQTDKSGNPTGPIWDWLGQPM
                     SNLIRFFAEDQALGFGLAIIIVTLLVRFIILPLGIYQSWKAAIQSEKMNYLKPILGPI
                     QERMKNASSQEEQLAAQQEYFATQKQYGVSMLGGIGCLPMLIQMPFFSAIYFAARHTP
                     GISEATFLGINLGSTSLILTVVAGILYYAQSLLMQVGMDEEQKKQMKTMALMNPIMIM
                     MFSFGSPAGVTLYWVIGGLFGILQQAITNFILKPRIRKQVEEEFKNITVSATPRKTKD
                     VTPKASAIIEEKTSKKSNRNAGKQRSR"
     gene            complement(22882..23163)
                     /locus_tag="U1335_000024"
     CDS             complement(22882..23163)
                     /locus_tag="U1335_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HEM5230552.1"
                     /translation="MRKVKMIASGRVQGVGFRWSVQFLAVEIGDIYGRVWNNDDGTVT
                     ILAQSDNAEKLSYFIHEIRKGPSRMAKVTYLDVTLANFEDYKDFQVSYR"
     gene            23294..24034
                     /locus_tag="U1335_000025"
     CDS             23294..24034
                     /locus_tag="U1335_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEM5230553.1"
                     /translation="MEIIRSKANHLVKQVKKLQQKKYRTSSYLIEGWHLLEEALAAKV
                     PIEHILVSEEHVHRVAGLSNVTVVSSDIMQDLADSRTPQGVVAQLSLPNQTLPDVLTG
                     KFLVLEDVQDPGNVGTMIRTADAAGFDGVFLSDKSADIYNMKVLRSMQGSHFHLPVYR
                     MPMTAIFSALKSNQLQILATTLSSQSVDYKEVTPNPSFALVMGNEGQGISTFVADEAD
                     QLVHITMPGQAESLNVAIAAGILLFSFI"
     gene            24081..24563
                     /locus_tag="U1335_000026"
     CDS             24081..24563
                     /locus_tag="U1335_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEM5230554.1"
                     /translation="MVAYKQDKEYMHYVGHLIATPKVQKLGKIPHHYHSTRLEHSINV
                     SYTSYKIAKKFGWDAKSTARGGLLHDLFFYDWRDTKFNKSHAWVHPRIAKRNAQKLIQ
                     LNKLEEDIIVKHMFGATIAPPRYKESWIVTCVDKYWAVREWSLPLQHKWKNRKVFRFQ
                     "
     gene            24585..25286
                     /locus_tag="U1335_000027"
     CDS             24585..25286
                     /locus_tag="U1335_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEM5230555.1"
                     /translation="MNNDSFIINQVDNTALNRFFGKIYGVVAMGIGLSALVSFLAVTV
                     FQSLLLSLLSAGSIIMMLIMIGQIALVVSASAMAAKNSPMALPMFLAYSVTNGITISM
                     ILMFYTSETVVLAFVSAALMFAIMAVIGMTTKKDLSGMAQALRAALWGIIIASVINIF
                     LRSSGLSFMMSIISVLVFSGLIAYDNQRIRNVFEQTGGNVGQGWVVSMALQLYLDFIN
                     LFLNLLRIFGGLSRD"
     gene            complement(25337..26668)
                     /gene="pepC"
                     /locus_tag="U1335_000028"
     CDS             complement(25337..26668)
                     /gene="pepC"
                     /locus_tag="U1335_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014607929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase C"
                     /protein_id="HEM5230556.1"
                     /translation="MSTLDFDFTERLYANYLANPSLQATENAVSHNGLLKSLETRQSA
                     IDNDYVFSIDLTKDAVSNQKASGRCWMFAALNTFRHKLISDFKLENFELSQAHTFFWD
                     KYEKSNWFLEQIIATADQEIGSRKVKFLLDTPQQDGGQWDMVVALFEKYGVVPKSVYP
                     ESISSSASRELNQYLNKLLRQDAQLLRDLLAKGASPEEVQTQKENLLQEIFNFLAVNL
                     GLPPRSFDFAYRDKDNVYHRDTNVTPQAFYEKYVGLKLSDYVSIINAPTTDKPYNKSY
                     TVELLGNVVGAPAVRYLNVEMNRFKELAIAQLKAGESVWFGSDVGQSSNRQTGIMATN
                     TYDFSSGLGIRFHQDKAGRLDYSESLMTHAMVLTGVDLDDNEQPLKWKVENSWGDKVG
                     DKGYFVASDSWMDEYTYQIVVRKEFLTQEELAAYQAQPQVLAPWDPMGALA"
     gene            26803..28050
                     /locus_tag="U1335_000029"
     CDS             26803..28050
                     /locus_tag="U1335_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEM5230557.1"
                     /translation="MTKTPFVSKEVLETITEQFPTPFHLYDEKGIREKARALNAAFSW
                     NKGFKEYFAVKATPTPAILKILQEEGCGVDCATDVEVLMSEKLGFKDIMFTSNDTQAQ
                     EFVYARKVGATINLDAYEHIEFLKNVAGIPETVCLRYNPGGIFSLGTDIMDHPEESKF
                     GMTKEQLMKGYKELKELDVKEFGIHAFLASNTVTNDYYPVLARQLFELALEIREETGV
                     TLDFINLSGGIGVNYRPEQEPNDIAIIGEGVRKVYEEILTPAGMGHVKIFTELGRFML
                     APHGHLITKVLHRKETYRTYIGVDASAANLMRPAFYGAYHHITNITRPDGPIEVVDVA
                     GSLCENNDKFAVNRELPRAEVGDTLVIHDSGAHGFSMGYNYNGRLRSSEILLQEDGTA
                     RMIRRAETPEDYFATIYGFDFDR"
     gene            28123..28365
                     /locus_tag="U1335_000030"
     CDS             28123..28365
                     /locus_tag="U1335_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YneF family protein"
                     /protein_id="HEM5230558.1"
                     /translation="MQLGIGLVIVLVLVAFAGGVALGIYLSRKQVENYIADKPVLDEN
                     ALRLMMSQMGQKPSEAKVQQVLRQIKSQQKVASKKK"
     gene            28455..29249
                     /gene="racE"
                     /locus_tag="U1335_000031"
     CDS             28455..29249
                     /gene="racE"
                     /locus_tag="U1335_000031"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000370386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEM5230559.1"
                     /translation="MDNRPIGFLDSGVGGLTVARELMRQLPHEEIVYIGDSARAPYGP
                     RPAEQIREYTWQLVNFLLTKNVKMIVFACNTATAVAWEEVKEKLDIPVLGVILPGASA
                     AIKATQSGKVGVLGTAMTIQSDIYRQKIQALSPETQVDSLACPKFAPLVESNSHQSSL
                     AKKVVYETLRPLVGKVDTLVLGCTHYPLLRPIIQNAMGKDVKLIDSGAECARDISVLL
                     NYFQINRSRTEKDIQHRFYTTASPAAFKEIAESWMGIDIHVEHVEL"
     gene            29246..30256
                     /locus_tag="U1335_000032"
     CDS             29246..30256
                     /locus_tag="U1335_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-triphosphate diphosphatase"
                     /protein_id="HEM5230560.1"
                     /translation="MTDKIYEYRDEHNWFIGKASFANLFGSFGENGREQEIYQIGQLF
                     DKLIAGNYEDENFNQCVNIEVIKLQSDFALFQFACDILNELNNRQFKVLQHQGAILVT
                     ENDKLLLVHLPKAGVSTVDFFGQDKGLASVGDTILIATKNEGKTKEFRKFFERFGYQV
                     ENLNNYPDLPDVAETGMTFEENARLKAETIAELTGKMVLADDSGLKVDALGGLPGVWS
                     ARFSGPDATDELNNAKLLHELAMVFELKDRSAQFHCTLVMAAPNRDSLVVEADWEGFI
                     GMDLRGENGFGYDPLFLVGETGKTSAELTLEEKNQISHRAQALEKLVEAFPVWQEQAK
                     QS"
     gene            30229..30756
                     /locus_tag="U1335_000033"
     CDS             30229..30756
                     /locus_tag="U1335_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEM5230561.1"
                     /translation="MAGASKTILVMSDSHGDRQIVEEIKNHYLGKVDAIFHNGDSELD
                     SQDSLWDGIQVVNGNCDYFGGYPDQLITQLDGVTIAQTHGHLYGINYGWQRLDYWAQE
                     VDADICLYGHLHVPDAEVRGKTLFLNPGSVSQPRGLVRECLYALVTIYDDHFHVDYYN
                     RQHQLYPALTKDISR"
     gene            30753..31211
                     /locus_tag="U1335_000034"
     CDS             30753..31211
                     /locus_tag="U1335_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEM5230562.1"
                     /translation="MIAREFEAFLLDQEETFLTPADKLAVIIDTHNIDHAKLLLSHMT
                     YSRVPVVTEDGRFFGTIGLTEIIKYQAEHELSDDELNTDISLIAKTDEETVGLDYDLT
                     EVMRKLVDQSFLPVLGENREFLGIITRKSILKAINALLHNFPLASKEGKK"
     gene            31208..31939
                     /gene="xerD"
                     /locus_tag="U1335_000035"
     CDS             31208..31939
                     /gene="xerD"
                     /locus_tag="U1335_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HEM5230563.1"
                     /translation="MKQAIESFIQSKKVSVNSQKSYTYDLQQFVTVTKGEISQQSLLV
                     YQQSLLDLKPAAQKRKMSAVNQFLYFLYENNLLDRFYKLQTMSGPASVKKKLEREDLT
                     LLFQESPWLDGQLIALLIALLGLTPSEIAELTSQQVNLDFQVLTVEKGATKRVLTLPK
                     ELIPYMESHLSGRYVFDKKGQTYSRQWFFNHLTEFVQSIGKPDWTAQKLREQYILKQV
                     DEGKSLDQIAKQLGLKTSMSLEKFR"
     gene            31939..32658
                     /locus_tag="U1335_000036"
     CDS             31939..32658
                     /locus_tag="U1335_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HEM5230564.1"
                     /translation="MDIKLKDFEGPLDLLLHLVSKYQVDIYEVPITEVIEQYLVYIAT
                     LQAMRLEVAGEYMLMASQLMVIKSRRLLPKVVEQIDPEDDPEMDLLDQLEEYRKFKLL
                     SEKLGEQHDERANYFSKPKLDLIYEDVQLAKDKTVIDIFLAFSKVMAEKQASLRQSHA
                     TIARDEYKIEDMMDFVCSRFETGPRLELRQLFQESQDVNEMITIFLATLELVKVHEIV
                     LEQTETFGDIYLVRSEDESLS"
     gene            32642..33211
                     /locus_tag="U1335_000037"
     CDS             32642..33211
                     /locus_tag="U1335_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein B"
                     /protein_id="HEM5230565.1"
                     /translation="MNRLAEIEVLLFVAGEDGLTLRNLAEMLEMQPTAVSQQLEKLSE
                     KYMADQASGLALLESSNRYKLVTKKEYANLLRIYAKTPINQTMSRALLETLSIVAYKQ
                     PITRIEVDDIRGVNSSGAISKLQAFDLIRENGKKEVLGRPNLYVTTDYFLDYMGINSL
                     EELPDVSEIDLIQEETELFVERNELENEN"
     gene            33201..33932
                     /locus_tag="U1335_000038"
     CDS             33201..33932
                     /locus_tag="U1335_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEM5230566.1"
                     /translation="MRINKYIAHAGVASRRKAEELIKQGLVTVNGQVVRELATTIKSG
                     DIVEVEGQPIYNEEKVYYLLNKPRGVISSVSDDKGRKTVVDLLPTVKERIYPVGRLDW
                     DTSGVLILTNDGDFTDEMIHPRNEIDKVYLARVKGVANKEVLRPLTRGVVIDGKKTKP
                     AVYEIIKVDPVKNRSVVELTIHEGRNHQVKKMFEAVGLQVDKLSRTRFGNLDLTGLRP
                     GEYRKLNKKDISKLHTLAVTKPVKK"
     gene            33932..34171
                     /gene="yidD"
                     /locus_tag="U1335_000039"
     CDS             33932..34171
                     /gene="yidD"
                     /locus_tag="U1335_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002272085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEM5230567.1"
                     /translation="MTRLLIGLVRFYQKFISPLFPPSCRYQPTCSSYMIEALQKHGLK
                     GFLMGLARIGRCHPFVEGGEDPVPDRFSLKRNKQK"
     gene            34579..36354
                     /locus_tag="U1335_000040"
     CDS             34579..36354
                     /locus_tag="U1335_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM5230568.1"
                     /translation="MKRMKNIALTGIGLLSIATLTACQTKEKTSDVALTFKSEVTHEG
                     QTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFAGMVDISMFGYDSARTLDDSGLA
                     KAEFDVDAKTVTVSLTGKDYKWSDGEAFTIDDYIFTIEQLASPDYTGVRADTTYTNII
                     GFEEFQAGTVSEISGVKKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVK
                     DWESSEYSRTAKVVGMGPYKVKEIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTI
                     VAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFNLGKYDDASGKNVTN
                     PNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYNP
                     EKAKKLLDEAGYKDVDGDGMREDADGKPLTIGVAAQKSTETQETMVQQYLTWWKEIGL
                     NVELYTGRTIEYNTFYESIAANDEGIDVYLAAWIAGLDPDPTSLWGPEAMYNYTRFVS
                     DENTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNKRVKYYD
                     VYIGSDSKSGHENLELTAEKGIAAE"
     gene            36737..37282
                     /locus_tag="U1335_000041"
     CDS             36737..37282
                     /locus_tag="U1335_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001019793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HEM5230569.1"
                     /translation="MNIETLEYIEETAKNHIVLFEPQIPQNTGNIARTCAATNSPLHI
                     IKPMGFPIDDRKMKRAGLDYWDKLDVRFYDNLAEFMDYASKQGRVHLVSKFADKTYSD
                     EDYNDGNIHYFLFGREDKGLPEDFMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEA
                     LRQQQFVGLDLVHTYDGDKLK"
     regulatory      37332..37667
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            37727..38284
                     /locus_tag="U1335_000042"
     CDS             37727..38284
                     /locus_tag="U1335_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM5230570.1"
                     /translation="MTNTRKMTIIAILSAVSFLLMYLKFPLIPTASFLEVDFSLVPIL
                     FGLLVLDMKSSFAILLVRTFLKLILNNQGPSTIIGLPMNIAAMSVFILAVAYFWKNEQ
                     TLKNYLKAAAVATLGSTAVMLVLNYVYAVPVYAAFANFDIKEILGLTNYLFMMVLPFN
                     LLQGIVLSAIFYICYKAAQPILKKV"
     gene            38309..38962
                     /locus_tag="U1335_000043"
     CDS             38309..38962
                     /locus_tag="U1335_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEM5230571.1"
                     /translation="MKNKQIHLRNASFFALAFVILGYVVKFYPTTLAGFDSTVQSAIR
                     GNLPSGASQFWTSITVLGNTVIILAITLILAAIFYYYKKWKIEAYFLLASFAAMGVAS
                     TALKYVYQRPRPSIEWLIDTIGYSFPSWHTASTMMIAGAVVIIVHQRMKKGIARLVLQ
                     AVLILLAVLVAVSRIYIGVHYPTDIIGGWLLAVTLLQMMYPFYDQKRFEWRFQSKQK"
     gene            complement(39348..41147)
                     /locus_tag="U1335_000044"
     CDS             complement(39348..41147)
                     /locus_tag="U1335_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEM5230572.1"
                     /translation="MKIKWLSVIRVIGLVFVLLYHFFIKYFPGGFVGVDLFFTLSGYL
                     TTALLIDEFAKHKKIDIVSFFRRRFYRILPPLVLTILLVLPLALLVRNDFIANIGNQI
                     AAALGFMTNFFEILSGGSYENQFSPHLFMHTWTLAIEVQYYLVWAGLVWYLTRISKSV
                     GQLRGSIFLTSISLFSLSFLAMSISSFFVDNFSTIYYSSFTHTFPFFLGSILATIAGI
                     GNTTTAFQQQVNTLTIKQAIGLFLGGLGVELLLLFTLQFSSIWTYLIGFLLSSLATAT
                     MIFAARVLHEKTEDVKEPAIILFFSSISYGIYLFHWPLLIIFTQLTNATIAAGLSFVF
                     SIILSTISFYILEPYIAGKVGSLFGLPMDLKPYKKWLLGSFACLTIVGLGICLFAPKL
                     GSFEQESMVSNLYQAQTQLNTTRSAAENAKATSFEIQKGVIIFGDSVTVRASAAIQTA
                     LPDAQIDGTVSRNLSEIAKLINLYKQNNSLKETVVVALGTNTTDNYQELLDQLVKDFP
                     KGRRLIFVTPYDGNFPPSESISYQTGQYEKELAEKYDYISIADWYQVAKDNPPIWYNT
                     DLVHFNLESNGGEVFAQTIKNAVEAVADGPIKN"
     gene            complement(41137..41559)
                     /locus_tag="U1335_000045"
     CDS             complement(41137..41559)
                     /locus_tag="U1335_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230573.1"
                     /translation="MKEFKLPSIKWHDITSYFTRPKLEILSLIIILICALSVFTGRIA
                     SKQAMTFNNGALQYNGYVVANKMNGQGKLTFDNGDVYEGQFTNGIFHGQGTYTSASGW
                     VYTGQFKNGYADGKGKLTTEGQAIYEGTFKQGIYQYEN"
     gene            complement(41691..42125)
                     /locus_tag="U1335_000046"
     CDS             complement(41691..42125)
                     /locus_tag="U1335_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HEM5230574.1"
                     /translation="MKKIVFVCLGNICRSPMAEFVMKDTTSQFHIESRATSNWEHGNP
                     IYPGTQKIFQKHKIPYDKTKTSQQISQADFEEFDVIIGMDSNNVRDLQKMAPAHAQNK
                     IFQFAEKSVPDPWYTGDFDETYEMVKKGCQDWLDRLQSFDQE"
     gene            complement(42295..42507)
                     /locus_tag="U1335_000047"
     CDS             complement(42295..42507)
                     /locus_tag="U1335_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEM5230575.1"
                     /translation="MSEEKFDAKLEQLSGSAKEVIGKLTGDKEIEVEGLVEKGIGKAK
                     ELVEDAKDGLEGAINGIKNAFDKEEK"
     gene            42709..43233
                     /locus_tag="U1335_000048"
     CDS             42709..43233
                     /locus_tag="U1335_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEM5230576.1"
                     /translation="MMKQKYYQSPAEIASFSPRQSTALADTKAVLNQAVADLSVAHSI
                     LHQVHWYMRGRGFMIWHPKMDEYMEEIDGFLDEMSERLITLGGAPFSTLKEFSENSQL
                     KEVPGDYTVTIEEQLARVVEVFRYLAALFQKGFDVSDEEGDSVTNDIFNVAKASIEKH
                     IWMLQAELGQAPKL"
     gene            43381..44259
                     /locus_tag="U1335_000049"
     CDS             43381..44259
                     /locus_tag="U1335_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5230577.1"
                     /translation="MIEVRALKKIIKGRTILSDISFEIQSGECVALIGPNGAGKTTLM
                     SCLLGDRKVTKGQVLLDGLAPQARSNKETVAVLPQENAIPTDLKVKELLRFFQAIYKD
                     SLTDVEIDSLLRFSPEQKNQLAGKLSGGQKRLLAFVICLIGKPKLIFLDEPTAGMDTS
                     TRQRFWEIVHELKAEGVTIFYTSHYIEEVEHTAERILVLHQGRLLRDTTPFAMRSEEQ
                     EKEVTLPIAFAAVVESLAEINEISYKQDTVSFKTRAIEQVWANLQEAGCRISDLEVQN
                     KTLLNSLFDKTREEES"
     gene            44256..44987
                     /locus_tag="U1335_000050"
     CDS             44256..44987
                     /locus_tag="U1335_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5230578.1"
                     /translation="MKALVQVEAVKLSRSLGVFLLSIGMPVIFFLIFSSTVQFDDATM
                     QKAFLQSYMLTMTGFSMSGFALFTFPTMLAEDRKNSWLTFIQHSPLPIWQYYLSKLVR
                     VLLCFVSSIAIVFAVGGLVKGVDLSAQEWAVSAFLLLVTSIVFLAIGLLLVQIQSEQA
                     MSVVANLLYFVLAIMGGSWMPVSLFPDWVQRICKLMPSYHANQLVTTYVQEGDFLWKS
                     LLIVLGYAIIFLGIALILNRKSEQQ"
     gene            44996..46090
                     /locus_tag="U1335_000051"
     CDS             44996..46090
                     /locus_tag="U1335_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM5230579.1"
                     /translation="MIFEKRKVPLMFFVGMVFLYFPFYYAQYSPNPTAVVLATILFAL
                     VYCSLFYTDHKLYSMLAWFYLIGYIAVMSFWGNLQFSLFIFNLSNMLGWYYKENRPTY
                     RTVSYGILLLAIILWALFGPVPFEMRAFALVIHFFGLALLIFSWIETKRAALQQRLQE
                     QNASINLLLAENERNRIGQDLHDTLGHVFAMLSVKAELVQTLLDHDQIDQAKKEVADL
                     QTLAKDSMQEVRQIVQSLKQHTVAEELQILQQMLDLAGVDLVVLGGEKAEQLSLPVQN
                     KLAMVLRELANNLLKHSQASKCRLIFEKEQQELVVYYEDNGVGFAQLTGQELHTIKDR
                     LVTVKGSLAFLSLAKPTRLSIRIPFEEVVE"
     gene            46087..46689
                     /locus_tag="U1335_000052"
     CDS             46087..46689
                     /locus_tag="U1335_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5230580.1"
                     /translation="MRILVAEDQAMLRDALCQLLGFQDAVEAVLQAENGSQAIALLEK
                     EPVDVVLLDIEMPEKTGLDVLEWVRGQALPVKVVIMTTFKRPGYFERAVKADVDAYVL
                     KERSIADLMRTIETVLAGRKEYSPELMDILLTQRSPLTDQESQLLKLVAEGLSNKEIA
                     SQLHLSDGTVRNYMTSILSKLGAENRTAAVKIAQEKGWLV"
     gene            46794..47012
                     /locus_tag="U1335_000053"
     CDS             46794..47012
                     /locus_tag="U1335_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgQ family protein"
                     /protein_id="HEM5230581.1"
                     /translation="MKRLYDVQQLLKQFGIIIYMGNRLYDIEMMQIELNRVYQAGLLD
                     RMDYMEAELVLRREHRLELEYQKSRENE"
     gene            47012..47398
                     /locus_tag="U1335_000054"
     CDS             47012..47398
                     /locus_tag="U1335_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEM5230582.1"
                     /translation="METFWVFLVFLAVLGAWMGFNYWRLRRAATVIDNAEFAEKIHGG
                     QLIDLRDPSEFNRKHILGARNIPYQQLRQSTAALRKDRPVLIYENDRGQLVTPAALHL
                     KKQGFNEIYILSYGLNGWNGKVKTTK"
     gene            47455..48177
                     /locus_tag="U1335_000055"
     CDS             47455..48177
                     /locus_tag="U1335_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HEM5230583.1"
                     /translation="MEKKFEKLSLAEIGIISFMGLILLISLGASWYKNAQSETSDTKT
                     VQQVPNQKKTVDTLFQDAENAVIVLEGTHTEEKLAEAQSAVNKVTDATKKAALQKRID
                     QVKELVGQQIDAQTQAKLKAELVRAEAAQKVADEKKVSETGTSQSTDLAEASETSQES
                     YVVPNQNIYGNQSVSSTSQYTSSVASTSTSTSVPPTSEGAPVVETPTVSEAPAETTDS
                     TTSLVESVETVPTADESSPDNP"
     gene            48487..49026
                     /gene="rsmD"
                     /locus_tag="U1335_000056"
     CDS             48487..49026
                     /gene="rsmD"
                     /locus_tag="U1335_000056"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HEM5230584.1"
                     /translation="MRIVSGSYGGRPLKTLDGKTTRPTSDKVRGAMFNMIGPYFEGGR
                     VLDLYAGSGGLSIEAISRGMESAVLVERDRRAQAIIRENIAMTKEADKFQLLAMEARQ
                     ALNSVEGPFDLVFLDPPYAEQEIEDVITELCRRDLLADDVMVVCETDKAVSLPEEIAE
                     LGIWKEKLYGISKVTVYVR"
     gene            49016..49504
                     /gene="coaD"
                     /locus_tag="U1335_000057"
     CDS             49016..49504
                     /gene="coaD"
                     /locus_tag="U1335_000057"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEM5230585.1"
                     /translation="MSDKIGLFTGSFDPITNGHLDLIERASGLFDKLYVGVFTNPKKA
                     GLLTGLERKAILEKLFVGMENIEVVLSENELVVDVARRYGVTHLVRGLRNATDLEYES
                     SFDFYNRQLAPDLETIYLIAKPELKFVSSSQVRELLYFKQDIGPYVPEIVSEEIRKNE
                     EK"
     gene            49491..50540
                     /locus_tag="U1335_000058"
     CDS             49491..50540
                     /locus_tag="U1335_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEM5230586.1"
                     /translation="MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQV
                     LTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDPYTTVRSSEEMTGGADNEEYFRI
                     AQFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALADDSTFKKVLNIADTVVSINGK
                     TFESSPDLIKYVSGLELGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEV
                     QSSIPIEFQTGNIGGPSAGLMFTLAIYTQLADPTLRDGRVIAGTGTIEQDGSVGDIGG
                     ADKKVLSAAKAGASIFFVPNNPVDEEILKEDPTAKTNYEEAKEAAEKAGLDIEVVPVK
                     TAQDAIDYLKKTKGE"
     gene            50728..51369
                     /locus_tag="U1335_000059"
     CDS             50728..51369
                     /locus_tag="U1335_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1027 domain-containing protein"
                     /protein_id="HEM5230587.1"
                     /translation="MKKEISPEMYNYNKYPGPSFARVGDKVVSENIELDLLEDYKNAF
                     DQTIFGQRFSQLMLKFDYIVGDWGNEQLRLRGFYTDDKNVKSDLKISRLDDYLTEYCN
                     FGCAYFVLANPNPQDLPAEEEDRPRRKRSRSRNRNRNQQRTEPIAPKENKSNRNDRQK
                     KGKQQNKQSEQRHFTMKNAGVKASHTERSQKRERKQSKREMNEVKRNFVIRQK"
     gene            51378..52490
                     /gene="rlmN"
                     /locus_tag="U1335_000060"
     CDS             51378..52490
                     /gene="rlmN"
                     /locus_tag="U1335_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEM5230588.1"
                     /translation="MKPSIYAFSQANLVDWILENGEKKFRATQIWEWLYRSRVQSFAE
                     MTNLPKSLIEKLEEHFVVNPLKQRIVQESKDGTIKYLFELPDGMLIETVLMHQHYGLS
                     VCVTTQVGCNIGCTFCASGLIPKQRDLTSGEIVAQIMLVQKYLDERNQNERVSHIVVM
                     GIGEPLDNYDNVMTFLRVVNDDKGLAIGARHITVSTSGLAPKIREFAREGVQVNLAVS
                     LHAPNNDLRSSIMRINRKFPIEVLFEAIEDYIKVTNRRVTFEYIMLNEVNDGVEQAQE
                     LADLTKNIRKLSYINLIPYNPVSEHDQYSRSTKERTLAFFDVLKKNGVNCVVRQEHGT
                     DIDAACGQLRSNTLKKDREKARARIAAAKAKAGIRA"
     gene            52487..53008
                     /locus_tag="U1335_000061"
     CDS             52487..53008
                     /locus_tag="U1335_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEM5230589.1"
                     /translation="MRKFFQADGNLTKLGRQICKTLAGAYALAIVLLCFLPQTWYPQY
                     KDFSTPGIIQIGRLYLLPTPFNSIVNGDKVDSLADLGWIFLQNITNIFLLFPLIFLLL
                     FLREEWRSLRAVIRYTFCMSLFIESTQLLLDLLIDAGRVFEVDDLWTNTLGGVLAYLL
                     FIHIKKWIIKFTG"
BASE COUNT        15513 a         9992 c        12216 g        15374 t
ORIGIN      
        1 ctcagtattt tggttttgcc ttgaatttgt cgcaacaaat cgcttatctt tttggtgaag
       61 atgaattatt tgttggtgaa gggaaggaaa tttcagaaga ggttcaaatc cgcattattg
      121 cctacattgg tgtcatgttt ggagcaggtg gttcagcagt tcttctcaat aaagtatcca
      181 agacagtcgg agctaatatc ggtaaaaaag tagctatgta ggctttgacc aagacaactt
      241 ggtatccctt ggtgaaaaac gtagctgcag tgattggtgt gaaaattatc aaaaagactg
      301 ttgaaaagac cattgccaat gcagttccta ttttgggtgg tctgatttca ggaggtttga
      361 cctattttac cttccagccc atgggaggga tcttggcaga cacatttgtg aaaaaaataa
      421 atggtgattt tgatggcgaa ttagaactca ctgaggcctt taaagcaagt ttggaagaag
      481 agaaggaact tggaattatt gaggcagaat ttactgaagc aagtgagagt tgattaggac
      541 gggtatccgt cctttttgct tgtccaccta aatcgtgcta taatagtggg aaatacaact
      601 aaagaggaaa ctatgaaatt tacagatatg aaactcaagc cttatattca ggaggctttg
      661 aaagaaatta actttgtcca gccgacagaa gttcaggaga aattgattcc tgttgttttg
      721 tcagggagag acttgatagg ggaatcaaaa acaggttcgg gtaagaccca taccttcttg
      781 atcccgattt tccaaaaatt aaatgaggaa ttggaccaag ttcaggctgt tattacagcc
      841 ccatctcgtg aactggctac tcagatttat caagcggcac gccagttggc tagtcattcg
      901 gacatcgaag ttcgtgtgac caattatgtt ggcggtacgg ataagaaccg tcaaattgac
      961 aagcttcaag ctagtcagcc tcacattgtt gttgggacac cagggcgtat ctatgatttg
     1021 gtcaaatcag gtgaccttgc tatccataaa gccaaaacct ttgtggtgga tgaggcagat
     1081 atgaccttgg acatgggctt tttagaaaca gttgataaga ttgctggcag cctgccaaaa
     1141 gacttgcaat ttatggtctt ttcagcgacc attccgcaga aactccaacc gtttttgaaa
     1201 aaatacttgt ccaatccagt catggaacaa atcaagaccc atacggtcat ttcagatacc
     1261 attgaaaact ggctgatttc aaccaagggg cgtgaccgta atgctcaaat cttggaagta
     1321 accaagctca tgcaacctta cttggccatg atttttgtca atacaaagac acgtgcagat
     1381 gaattgcata gctatttgac tgcaaatggt cttcgtgtcg caaagattca cggggacatt
     1441 ccaccgcgtg aacgcaagcg gatgatgaac caggtgaaga acttggacta tcagtacatt
     1501 gttgcaacgg atttagcagc acgtgggatt gatattgagg gcgtcagtca tgtcatcaat
     1561 gatgctattc cacaagacct ttccttcttt gttcaccgtg tggggcgcac aggtcgtaat
     1621 ggtttatcag gcattgccat taccctttat cagccaagcg atgatgcaga tattcgagag
     1681 ctagaaaaac tcaatatcaa attcttgcca aaagaaatga aaaatggcga atttgtcgat
     1741 acctacgacc gtgaccgccg tgctaaccgt gaaaaatctc gtgaaaaact agatttggaa
     1801 atgattggct tggtcaagaa gaaaaagaaa aaagtcaaac caggctacaa gaagaaaatt
     1861 caatgggctg ttgatgaaaa acgtcgcaag accaagcgag ttgaagcgcg tgcaaagggt
     1921 cgtgcagaac gtaaagccaa gcgtcaaacc ttttaaagta atcgaggaaa aagatgttac
     1981 aaaacattct aagtttttat ttacaaggat tgctaatagc ttccttgttg attatcactt
     2041 ctagtctggt ctggtttatc tggcgtgcga caaagggtgt ggataaaacc ttgcaagaac
     2101 gacaagattt cttgtttgat ttgttgatga ttaatgtgat gacaattccc attgcagcct
     2161 ttggagtagt gggaatctta ttaatgttta aagcgtagaa ggaaaaagta tatgtacgat
     2221 acagttgtaa ttggtgcggg tcctgcgggg atgactgcag ctctttatgc agggcgtagc
     2281 aatttaaagg tagctctttt ggaacgcggt atttatggtg gtcagatgaa taatactgcg
     2341 gaaattgaaa actatccagg ctatgaccat atttcaggtc cagccttggc tgaaaaaatg
     2401 tttgaaccct tggaaaaatt cggtgtggac catatttttg gcaccctagt ccgtattgag
     2461 gaagaaggac aaattaagaa agtgattact gaggatggtg ttttggagac aaagacagtc
     2521 gttctagcca tgggggcaaa acaccgcttg ttaggtattc caggtgagga tacttacaat
     2581 agccgcggag tttcctactg tgcagtctgc gacggggcct tcttccgagg tcaaaaactc
     2641 ttggtagttg gtggaggtga ttctgcggtc gaagaagccc tcttcttgac acagtttgcg
     2701 gagtctgtga caattgttca tcgccgtgat caacttcgtg ctcaaaaagt catccaagac
     2761 cgcgcctttg ccaatgaaaa aattaacttc atctgggata gcgtagtcga agaaatcaag
     2821 ggtgatgact tacgtgtaca aagcgtggtt atcaaaaatg tgaaaactga agaagtcagt
     2881 gaacttgatt tcggaggtgt ctttatctat gtcggtctgg atccgatgac tgatacagtt
     2941 gcggacctag gaattacaga cgaagctggt tgggttatca ctaatgaaaa gatggagacg
     3001 actcaatcag gcatctatgc catcggtgat attcgtcaaa atcaactacg tcagattgcg
     3061 acggctgttg gaaatggggc ggttgccggt caggaagtct ataactacat cacagaacta
     3121 gctgaatagg ggaatacaat gtttcatatt tacgacattc agaaaaatcc agatggaatt
     3181 tcctttgaga agaccttgga tttgcaggaa gaattgcagg ctcgaaatag tgaagttcta
     3241 ggcttgtcgc ctgtacaagt aagcggaaat gttcgctttg agtcaggttt ctttttcttg
     3301 gactatcaga tgacttacga cattaccttg gcttccagcc gttctctgaa accagttgtt
     3361 ttgcatgagg tccaaaacgt caatgaactc tttgttgcca atgaagcagt tcttaaagaa
     3421 caagatttga ttgatgagga tatggtactg gtagtagaag atgaccacat tgtccttgat
     3481 gagagtgtag cagataatat tttactggct ataccaatca aagtcttgac acctgaagaa
     3541 gaagctggac aggaactacc atctggtcaa gcttgggctt taatgactga agaagatttt
     3601 caacaaaaag ctcaagagaa aaaagaggcc aatagtcctt ttgcccaatt acaagggtta
     3661 tttggagatg aggactaact cagattggca agatagttaa attatctgaa aattcttgtc
     3721 aattttaagc tttcggtgta taatgaaggg gatacaaatt agaggagtaa acaaatgact
     3781 aaagcaaatt ttggtgttgt agggatggcc gttatgggcc gcaaccttgc acttaacgtt
     3841 gaatcacgtg gctactcagt agctatttac aaccgctctg ctgataaaac agaagatgtt
     3901 gttgcaagca atccaggcaa aaacttggta ccaagttacg atgtggaaag ctttgtggca
     3961 tctatcgaaa aaccacgtcg catcatgctt atggttcaag ctggtcctgg tacagatgca
     4021 accattcaag cacttttgcc gcacttggat gaaggtgaca tcttgatcga tggtggtaat
     4081 actttctacg aagacactat ccgtcgttca aaagaattgg caaactcagg tattaacttc
     4141 atcggtacag gtgtatctgg tggtgaaaaa ggagcccttg aaggtccatc tatcatgcct
     4201 ggtggtcaga aagaagctta cgaattggtg gcagatgtct tggaagaaat ttcagcaaaa
     4261 gcaccagaag atggagcacc atgtgtgact tatatcggtc cagatggagc tggtcactac
     4321 gtaaaaatgg tacacaacgg tatcgagtat ggcgacatgc aattgattgc ggagtcttat
     4381 gacctcatgc aacacttact tggtttgtct gttgatgaaa tggctgacat ctttactgag
     4441 tggaacaaag gcgaattgga tagctacttg attgaaatca cagcagatat tttgaaacgt
     4501 aaagatgacc aaggtcaaga tggaccaatc gttgactaca tcatggacgc tgctggtaac
     4561 aagggtactg gaaaatggac tagccaatca tctcttgatt tgggtgtgcc attgtcattg
     4621 attacagaat ccgtatttgc tcgttatatc tcaacttaca aggacgagcg tgtggcagct
     4681 agcaaggtcc ttccaaaacc agctccgttt gcatacgaag gcgacaaggc tgaattggta
     4741 gaaaaaatcc gtcaagcatt gtacttctca aaaatcatgt cttatgcaca aggttttgca
     4801 cagttgcgtg tagcatcaaa agaaaacaac tggaacttgc catttggtga aatcgcaaaa
     4861 atctggcgtg caggttgtat catccgcgct cgcttcttgc aaaaaatcac agatgcctac
     4921 ggacgtgatg aagacttggc aaacttgctc ttggatgagt acttccttga tgtaacagct
     4981 aagtatcaac aggcagttcg tgatgttgtt gccttggcag ttcaagcagg agttcctgta
     5041 ccaacattct cagcagctat tacctacttc gatagctacc gtgctgaaaa cttgccagcg
     5101 aacttgattc aagcacaacg tgactacttt ggtgctcaca cttataaccg taaagataaa
     5161 gaaggaatct tccattacga ctggtatagc gaatcaaaat agaaaagatg ggcgtggaag
     5221 cgcccttctt tctagtcata atacgattcc tacaccattt gaaagaatag aaaaggatgg
     5281 ataatggcta agaaaatttt gattgctggt aaagaacgca atctctcgca ttttgtttcc
     5341 atggaattgc agaaaaaaga ctatcttgtt gattatgcat cgactgggaa agaggctatg
     5401 tccttggcac atgaaacgga ttttgacttg attctgatga gttttcagct ttcagacatg
     5461 tccagcaagg aattggctac agaactatta gcgataaaac cagccacggt catgattgtg
     5521 gtagttgagc cgacagaagt tagtcaatat ggggaagaag tcctctctta tgctgtttcc
     5581 tacgtggtga agccctttgt catcagtgat ttagtggagc aaatctctgc gatttttcgt
     5641 ggtcgtgatt ttattgacaa taactgtaag caggttcaca tgcatgcggc ctatcgtgat
     5701 ttgaaggttg attttcaaaa tcgaacagtg actcgaggtg atgaattgat taatttgacc
     5761 cgccgagagt atgatctgtt ggcgacctta atgaatagcc cagagcctgt tagtcgagaa
     5821 caacttcttg agcgtgtttg gaaatatgaa gcggcttctg agaccaatgt cgtcgatgta
     5881 tatattcgct atctacgtgg taaactggat ttgccacatc aagattcata tataaaaaca
     5941 gttcgtggtg tcggatatgc catgcgcgat tgatttagag tagagaggag ggagtgagaa
     6001 agaactctat ttttcaaaaa tgagttcgtc aacaagtctt tatttctagt tgtcgagctg
     6061 aaacagtcta ttcccagact gtttcactcc caccccgcat agttccaact gtctggggga
     6121 cagttggaag ttggaaatag agcgaacaaa gttcgctaca aaactgtctg ggagatagtt
     6181 tgaggttgga gatgaagcga actctgttcg catcagtcgt agaggtcaga ttttgagtgt
     6241 gaaacgcgaa tttctgagat ttgcttcgca aatcttatct ccaaccttta acagtccact
     6301 ggactgttaa acccaatcaa ccactgcgct gagatgttga cacgaacttt gaaaagagag
     6361 gttggtcttt ttgtccagcc cctctttctt tttctataag cgtgtgataa aataatagcc
     6421 aataagtaag aatggaaaag ttatgaatac atcatttaaa gaaaaagtca tattgatact
     6481 cttatctgga gcgacattgt tagctgttct caactggtct agtatttatg gggctattca
     6541 acaattatta ggcagtatga attcgctttt tattggagct atttttgcct ttattctcaa
     6601 tgttcccatg aaaaaattag aagatcagtt tgaaaaaatt tcttttttaa agaaatccaa
     6661 gcggtctttg gcaattgttg gagtattaat tggatttgct ttaattgtga caggactggt
     6721 ggtgattgtt cttcctacat tggtgacgac tgtttcagaa ctggtttcgg ttagcagcac
     6781 agccattcca aaatcggtaa atgccctaac taattttctt gaatcaaatg gtcttttgtc
     6841 gggacaaatc ggagaccaga tagccagctt tttggatcag ttgaagaatt taacacttat
     6901 ttcaagtttg gtcacaccga ttttatctgg cttggtgtcc aatgtgacgg ggattttttc
     6961 gaatactatg acgttgataa tggctttctt cttcactcta gcgattttag ggagcaagga
     7021 acacttgcag gcgatgacga gaaagttctt gcaggctacc ttgccagaga aggctatcag
     7081 agtagtgaac tatattggag aagttattgt tgatacctat gaccgattct tgatgagtca
     7141 gattgtcgag gcgtgtatca ttgggacact tgtctttgtt agttattcgc tctcaggaat
     7201 tccttatgcc agcatggctg gtattttggc tggggtccta tcgtttgtac cttatatcgg
     7261 tcccttttca gcgtgtttga ttagtgctct ctttgtggcg gtacaaaatc cgctcttggc
     7321 actctggtct atcgtactct tccagattct tcagttgatt gaagggaatg tgatttaccc
     7381 gcgcgtggtt ggtcaatcag ttggtcttcc gaccctattt accctggctg cagccttgat
     7441 tggtggtaat ttgtttggtc tacttggaat ggtcttcttt accccaattt ttgcggttgt
     7501 ctatcgcttg gttcgtgaat gggttgccag tcgattgaag aagcaagatg aattattggt
     7561 agaaagtgag taattctcgc tttcttttat ttttgtcatt tttatgctat actgaagtga
     7621 taaagtttat gtaggagaaa gagtatgcgt tgtccaaaat gtcagagttt gaaatcaagt
     7681 gtcattgata gtcgtcaggc tgaagatggc aataccatcc gtcgtcgtcg ttcctgcgac
     7741 caatgtggtc aacgttttac cacctatgaa cggattgaag agaaaactct agtcgttgtg
     7801 aaaaaagacg gaactagaga gcagttttca cgtgaaaaga ttttcaatgg gattattcgt
     7861 tctgctcaaa agcgccctgt gtcaaccgat gatattgatg aagtggtgaa tcggattgaa
     7921 cagaaggttc gagcacaagg tgatagtgaa atagaatccg atgtcattgg gaatttggta
     7981 atggaagaat tggtcgaatt ggatgaaatc acctatgtgc gttttgcatc ggtttatcgt
     8041 tctttcaaag atgttggaga gctagaaaat ttgcttaagc agatgatttc caaaggaagt
     8101 aaggtaaaac tgggaaaaaa agatgaaacc aaatgattta tttgcctata taaaaatcag
     8161 cccgtttaca cctgatattg tcagtcttag ccaatgctac cagccgatta tcggttttga
     8221 tgcattagcg ctttattatt acttttatag ttttgccgat caagggcaag gacgttacaa
     8281 atggactgtc attctcaatc acatggattt tggaatgaat cgtttggaga aggctctgga
     8341 tgttctgact gctatgggac tcctagaact ctatcgtgca gatgaattaa caggtttggc
     8401 gctacaagcc cctctgaccg taaaaagttt tctagcgaaa cccttgtata agaacttgtt
     8461 ggtaaggaag attggggagt caagcatgga gaatctgctt gttcacctac ccaatcagga
     8521 acagaatatc tcaaaaacat tttctcaggt ctttaccatg gatgggcagg ctccagttgt
     8581 ttttgaaccg aaacatgatt ttgactggtc tgccttcaag gcattaatgg ctaaagataa
     8641 gcttcttttt caggatgaag ctgaggatat tattgcgctt agttacatag cagagcaggc
     8701 agggtggacc tggttggaaa cctatcggca ggctaaagca acagctattg gacagacgat
     8761 ctcgaccaaa cgcttgcagc agtcacgtca gtcattgcca gcagaaagcg ccaacctcac
     8821 tgcccaagaa caagccattg ttcgtgaagc gaaatcaaaa tccagcctaa ccttcctgtc
     8881 ctttatcaag gagcaacgga aggcagcagt gaccgcaaca gaacgaaaat gcttgacgga
     8941 tttggccaat ttgggtctgc ttgacgaagt tatcaatgtc ttggtcctct atacctttaa
     9001 caaggtggat tcagccaatc tcaatgaaaa atacgctatg aagctgggca atgatttttc
     9061 ctacaaggga attggcagtg cagaggcggc tgttctttac ctaagagagt tgaagacagg
     9121 tcaagctgtt accaagccga gccagccaca gaaaagcaat gtgcctgagt ggagtaagga
     9181 agaggttcag caaggacaaa cgcaggaagg tcaagccaag ctggcggctc tttatcgtga
     9241 attagaagaa atggaaaaca aaggaggtag ctgatgaaat cagttcaaga caggttgtcg
     9301 caaacaacca atccaagtcc aaaatcttat cagcaactct atcaggagat agtgagtgat
     9361 cctgaagtcg ctgcttttat caaaaaagaa ggtttgaccc agcaggaaat caccctctcc
     9421 atttctaagt ttttggaata tatcagtcag cgtgacctct ttgtcaaaca ggatgaatcc
     9481 tatattgcca aggggtatca acctgttttg gttatgaatg agggctatgc ggatgtttcc
     9541 tatcttgaaa cagaggaatt ggtcgaatac cgtcgtttgg aagctatcaa gaaccgtatc
     9601 cagctcatca atatgccggc gagtttgaag aatgtaacag tggcggatat tgataagagc
     9661 gatgaaaatc gtgtggaagt catgctggct attgcagatt ttgtcaaacg atttgaggaa
     9721 aaaccaaaag ggctctacat ctatggcaat ttcggtattg gaaaaagtta tttgatggct
     9781 tatttagcca atcttttgtc caagacccat cttcaatcaa ccaccatgct ccattatcca
     9841 acctttgtgg tcgatataaa aaatgctatt aaagatggtt ctgtcaagga gcggattgac
     9901 gaaatcaagc tggctcaggt cttggtacta gatgatattg gagcggagca acatagtccg
     9961 tgggtgcgtg acgatgtgct gcaggtcatt cttcaatacc gcatgcagga aaatctgccg
    10021 accttcttta cctccaattt ctcctttgat gatttggagc gtcattttgc ctctggcaag
    10081 tctggtgatg agacctggca agccaaacgg gtaatggagc ggattcgcta tctggctcgc
    10141 gatttgcatt tgaaaggaaa taaccgccga tgaatgaaac cattgatttg atgctgaacc
    10201 atacttccgt ccgtcgtttt acggaagagc ccattgaggc ggaacatttg caagctatta
    10261 tatcagctgg gcgagctgcg tctagctgga agaacttcca gtcttattcc atcattgtgg
    10321 tgcagtcgga ggagaaaaaa caggatctct atgatttggt gccccagcca gctattttac
    10381 aggctcaggc cattctggtt tttgtgggcg accataatcg tgccagcaag gcagctcaac
    10441 tccacggttc agactttgat gccaaaggaa cagagaatct cctgatttct tctgttgatg
    10501 cgagcctagc agggcaaaat gcccttttag cagctgaaag cctgggttat ggtggggtct
    10561 ttattggtat gattcgccac aaggctttgg caatagcaga gctgttcaac ttgcctgact
    10621 atacctatcc tattttctgc attgccttgg gtcgaccagc ccaaaatcat cctgttaaac
    10681 cacgtttggc aagtgaaaca attgtctttc aggaagaata tgtggagcaa ggcgtggaag
    10741 taatccaagc ctacgaccaa gttcagtcag actatgcagg agttcgtcag acagaaactt
    10801 ggtctgagcg tatggttgcc cagtttggtc agccagagca gcctgaaacg agggctgtat
    10861 tagaaaaaaa taaactattg taagttatag tctttttatt tgcttttagt actcgctcaa
    10921 actgtctggg agacagtttg agattggaga taaagtgaac caagttcaca tcaaaagctg
    10981 cagacagtac tggagtacgg caaagcgagt tcaaataatg atgacattat ttgaagttgg
    11041 aaatagggaa acgaagtttc ctcatgcgtc gacgtaataa aagataaacg aaaacgacta
    11101 tattagaaga ggaggagcta tggctctacc aactatcgcc atcgttggcc gtcccaacgt
    11161 tggtaaatca acactattta accgtattgc gggggaacgt atttctatcg tagaagacgt
    11221 ggaaggtgtg acccgcgacc gtatttatgc tactggtgag tggctcaatc gtaagttttc
    11281 cttgattgat acaggcggta ttgatgatgt ggatgcacct tttatggaac aaatcaagca
    11341 tcaggctgag attgccatgg atgaagcgga cgttatcgtc tttgtcgtat caggcaagga
    11401 aggtgtgacg gatgctgacg agtatgtatc gcgtatcctt tataagacaa acaaaccagt
    11461 tattttagtt gtcaataaag tcgataaccc tgaaatgcgt aatgacattt acgatttcta
    11521 ttcactcggt cttggagatc cttatccagt atcttctgta cacggtatcg gaacagggga
    11581 tgtcttggac gctatcattg aaaacctacc agctcaggaa gcagaagaaa atccagatat
    11641 tatcaagttc agcttgatcg gtcgtcccaa cgttggtaag tcaagtttga ttaatgccat
    11701 tttgggtgaa gagcgcgtga ttgcgtcgcc tgttgctgga acgactcgtg atgctattga
    11761 tacgcacttt acagaccctg aaggtcaaga gtttactatg attgacactg caggaatgcg
    11821 caagtctggt aaggtctatg aaaatacgga gaaatactct gttatgcgtg ccatgcgtgc
    11881 cattgaacgc tcggatgtca tattgatggt tatcaatgcc gaagaaggta tccgtgagta
    11941 tgacaaacgc atcgcaggtt ttgcccatga agctggtaag gggatgatta tcgtagtcaa
    12001 caagtgggac acgcttgaaa aagacaacca taccatgaag cagtgggaag acgatattcg
    12061 tgaccagttc caatacttgt cttacgcacc gattatcttt gtgtcagcct tgaccaaaca
    12121 acgcttgcat aagttgcctg agataatcaa ggctatcagt gaaagccaga atacccgtat
    12181 tccatcggct gttctcaacg atgttatcat ggacgccatt gctattaacc cgacgccgac
    12241 cgacaagggc aaacgtctca agattttcta cgcgactcag gttgcgacca aaccaccgac
    12301 ctttgtggtc tttgtcaacg aagaagagct catgcacttc tcctatatgc gtttcttgga
    12361 aaatcaaatc cgcaaggcct ttgtatttga agggacaccg attcatctga tcgcacggaa
    12421 acggaagtaa ggctgggcaa aaagtccagc cacgcttctc agagttcggg tcaacatctc
    12481 agcgcagtgg ttgattggta gatttgttcg tgttttacac tccaaatctg accattacga
    12541 ctgttgcgaa caaagttcgc tctatttcca acctcaaaag gttcattgaa ccttttgagc
    12601 tgtgcggggg tgggagtgaa acagtctggg gatagactgt ttcagctcaa caaccagaaa
    12661 taaggacttg ttgacgaact cttttaacaa tttgcgagtt ctgtcccact ccctctttgc
    12721 aattattcgt aaatatgcta gaatggactt ggaggtgttg gtatggtagc gttaccgatt
    12781 tggcgattgt tctttctatt gctttctatc tcagctttct attttatttt ctatgaagat
    12841 agtcagtata agcctttcgg tcttcggtat tggctgggac tggtggcttg catttggctc
    12901 aattttgtga ctttggcatc ctattttatc gcctttacag gtggttcaat tatggtctat
    12961 aatcagtata aacagccatt ggttgtgata ttcctttttt gtctattcgt ggctagtatg
    13021 ctaaccttac tttcctttaa ggctatcaag atgatgattc gacgaaccaa gtattatcga
    13081 caggtaagaa aggaagtcta gtatggaatt ttttggtgag ttgctagttg agtttttgac
    13141 tggtctagca gacttcgatg aaaagaaaca ccctcccttt ggaattcgct attggctggg
    13201 ctggttggga gttctgattc atgtcttact ccttgccttg ctcacttgtg tgactgtctt
    13261 ctttttcaag tttttcttgg ttggaaaagg cttgattaac gtagtagtgg cagttgtttt
    13321 cctgctattt accctatttt ggctttggaa aagcagaaaa acaattttga aaatgtgtca
    13381 agcaacgatt tattatttag ctattcatta gagacaccag tttgccagct ggtgtttttt
    13441 gatacctatt taaacaattc aaattgaaaa tatgctataa tgaaaagata atattttaga
    13501 tatattttac agaagagctg atgattggtt gaaggataaa ggagttagaa tgggtcgcat
    13561 gatgccaggg cggattcgcc aagaaggaat tgatttgtac gaggctggaa aactaactgt
    13621 tcttcatagt gagaatggaa agatggtgct ggatattgct ggtgagcgct ttacttacgg
    13681 cgatgcagat agcgatttac agtgtagttg ccagttattt caaagtaagg gctactgtca
    13741 acacctagct gccacggagt attttttaaa aaatgatgcc tcaggcaagg atatgaagca
    13801 gtctttgaaa gaagatggtg aacaacataa ggaaaccgtc cgtcggactt attttggcgg
    13861 tctcttttta gatgaaattt tgcggccaga acctgaactg gggcttaagt atcagttatc
    13921 agttgaaggg agcttattgc cctatgatcg tcagatagat tggaccttga aaattacccg
    13981 cttgccagat acacgttcgt acattgtgcg ggacatcgga gcttttttgc gcattgtgaa
    14041 agccaacggt cactatcaga taggtaaaaa ttattatgag caagttactt atgaaaattt
    14101 tgatgaacca agtcaggctc ttctggattt tctctgggcc ttggtaccag agaaagttgg
    14161 tatagattcg gatattctta ctcattttgg acgacatttt cgtctgccac aagcctattt
    14221 tgaggagggg ttggagctgt taaatcagct agaacatttt aacttttctt atcaacagca
    14281 gtcctattcc tccttgatgg ttcttccgtt gacaggtgag gaagggctct atcattttga
    14341 ggtgaccgtt cacacgcaga tgattgaaat ggttattcat gaaaaaacag tccgacctct
    14401 ttttcatggg cgctatctct tagtaaatgg cacggtttat agtgtcaatc gccatcaaga
    14461 acatctgatt taccaaattt ccgaacttgt tccaaccgaa tcaggtttga gaaaagtgca
    14521 ggtggatttc cctgaccaaa atcgtctggc tttaagcttg ctggatttgc agacaattgg
    14581 gactgttaag gcacctaaac gcttcatcat tcatgatttc aagccagaat ttcatattca
    14641 gatggaggca aatgaaagtt tatcactcca attggttttg gattttgatg gacgtcaggt
    14701 aaggagtgaa gaggatttgg ctctcctgcc ttttgctagc catttccaac atttggagag
    14761 gatctatcag gctattcgtt tagctggctt tagggggaca tatcatgccc agagagcggc
    14821 tcttagtcag caggagctct atccattttt ccaacaacaa ttgtctatat tacaaaaaat
    14881 ggggcaggtt catctagtag aaaggctaca ggctttatat attgaagcca aacctcaatt
    14941 agaaattgtg cgtaacggct cacttttgga tatttcgttt gacttatcag gtattgaaca
    15001 atctgaaatc gatcaggcga ttacagcctt gctgaatcaa gaggaccact atactagccc
    15061 gagcggtaag gtatttgttt ttgatgagga aaccaagaaa atcagtcaaa ccctaatcta
    15121 tctgcgggcc cgtcatggta gggaggggca ggtacaagtc catgctcttg ccggttacca
    15181 attggctcaa tccttgtcac aattcaacca agtcagtttc tccaaggaat ttgaggaaat
    15241 ggcaagctat ctagctcagc cagatttgtt cccgcttcct gctgcggaag taacaacgtc
    15301 gcttagggat tatcagcaga cagggcttaa gtggttgact atgctggata cgtatggttt
    15361 tggtgggatt ttagctgacg acatggggct tggaaagacc ttgcaaacta tcgcctttct
    15421 gtccagtcgg atgacaaaag attccaaagt tttaatattg gcaccgtcta gcttgattta
    15481 taactggtta gatgagtgca agcggtttgc tccaagttta gatgtggcag ttgttcatgg
    15541 aaacaaggaa cagcgtgaag agatcattgc caatggtcac caagtcttag ttacctccta
    15601 tccatccttc agacaggatg ttgcactcta tagacaggaa cgctttgact acctcatttt
    15661 agatgaggcg caggtcatga agaatgccca atctaagatt gcacagctac tgcgtgagtt
    15721 tgaggttggt aattgctttg ccctctcagg tacgccgatt gaaaaccatt tgacggaact
    15781 ctggtccatt ttccaaattg tcttaccagg tttattgcca ggcaaacaag acttcggtaa
    15841 attagcagcc aaggacattg cgcggaccat tcaacccttc gttctcagac gtcataagga
    15901 agacgttctt caggaattgc ctgatttgat agaagtcaat gtacttaatg aactaacaga
    15961 tgaacaaaaa gccatctacc tagcccagct tcaacaaatg cggactcaaa tagctggcgc
    16021 agatgatgct caaatcaatc gtagtaagat agaaatccta tcaggaatta ctcgcttacg
    16081 tcaaatctgt gataccccca gccttttcat ggaagagttt agtggtgaga gtggcaaact
    16141 taatagtttg aaagaattac tcttgcagct aaaagaaggt gaacacaggg tcttgatatt
    16201 ctcccaattc agaaatatgc tggaaaaaat agaagaacag ctggtagaaa ttgggatgac
    16261 atcctatact ttgactggtt caacccctgc taaccaacgc caagaaatga cacaggcctt
    16321 caatgcagga agtcgagatg cctttctcat ttccttgaaa gcaggtggcg ttggcttgaa
    16381 tttgacaggt gcagacacag tcatcctagt cgacctttgg tggaatcctg ccgtggaagc
    16441 acaggctatc agccgggctc atcgcatggg gcagactgag aaggttgaat gctatcgcct
    16501 gattactaga gggacaatcg aagagaagat tcaagaatta caagaaaata aaaagaacct
    16561 tgtcaaaaca gtccttgatg gcaatgaaag ccgagcgaat ttgacggttg aggatattcg
    16621 tgagatttta gggattgagt gatatggaat cagttgactc agcgtagaat taggaaataa
    16681 ggcctaagta tggtataata agggttcgaa aggatgactt atgattagac atgaaaaaag
    16741 atttccacta gtcgcagatg atgaggtact agttggagaa aatccaatta tgagtttata
    16801 tgatgagagc gacctgatta gcaatatcag gggaccttat caagaaaagg aatttagctg
    16861 gtctaccgat tcacagcgag ttgcgtcggc aaaaccagta gcacaaacgg aagatgagct
    16921 cctgcctcct ctgtttgaag ctaagccaag ccattattct cgcaaggaac gccttcagca
    16981 actgactaaa acgaagcctt ctccagtgaa aacacagggg cagttggctc gtgaacaggc
    17041 tagagaagac ttgaagaaaa aacgatcagc aacctactta agagatgaaa aaccagcacc
    17101 agctaaagtt gtggtgaaac ctcctgtcgt ttcaacaact gaatctaagg caggtcggtt
    17161 gacacgtttg gcggacaacc tacgtcagac agactatatt ctcgctgata tgccagctgt
    17221 ctattctttg aagaaagaag atagagaaca ggagcaggtt ataaagaaaa attcgtatga
    17281 ctttttaaga aagagtcagg tttacaatta tcctgagcgc agacaacaac gggatcgcca
    17341 agtggcacaa gaattgaatt tgacacatat agaagaggga taacatgaca aaaacctatc
    17401 attttatcgg aattaaggga tcaggtatga gcgcacttgc tcttatgttg catcaaatgg
    17461 ggcataaggt tcaaggtagt gatgtagaga aatactactt tacacaacgt gggcttgaac
    17521 aagctgggat tcagatttta ccgtttgatg agaaaaatat tacagcagat gttgaattga
    17581 ttgctggtaa tgcttttcgt ccagataaca atgtggaaat cgcttatgct gatgcccagg
    17641 gctataccta caaacgttac catgaatttc taggtgaatt tatgaaaggt tttacgagcc
    17701 tcggtgttgc tggtgcccat ggtaagacct ctacaacggg attattggca catgttatgc
    17761 gcaatatcac agatacttcc ttcttgattg gtgatggtac tggtcgcggt tcggcaaatg
    17821 ctcagtattt tgtgttcgaa tctgatgaat acgaacgtca ctttgcccca taccatcctg
    17881 aatacagcat cattaccaat attgattttg accatccaga ttatttcact agtctagagg
    17941 atgttttcaa tgctttcaat gattatgcga agcaagtaaa aaaagctctc ttcgtttttg
    18001 gtgaagatga gcaacttcgt cgtatcacgg caaatgctcc aatctactat tatggcttgg
    18061 aagacaataa tgattttgtt gcctatgact tgaagccttc tacaagtggt tcacaattca
    18121 aagttcacca tggtgaagaa gagttgggag aattccaaat tccaaccttt ggtaagcata
    18181 atgtgatgaa tgcaacagct gttattgcta atctctatat tgctggattt gatttgcaac
    18241 tggttgcaga acacttgaag acatttggag gtgtcaaacg tcgctttacg gagaaaattg
    18301 tcaatgatac tgttatcatt gatgactttg ctcaccatcc aacggaaatc attgcaacca
    18361 ttgatgcggc gcgtcagaag tatcctagca aggagttggt agccattttc caaccacata
    18421 cattcactcg taccattgcg cttctcgatg agtttgcaga tgctttgaat ggagcagatg
    18481 cagtttacct tgctcaaatt tatggatcag cgcgtgaaac agacaatggt caggttaagg
    18541 tagaagattt ggcggctaaa atcaacaaaa aaggtggact tgttacagtt gaaaacactt
    18601 caccactttt agaccatgac aatgcagtat atgtatttat gggagctggt gatattcagt
    18661 cctatgaata ttccttcgaa agactcttgt caaatcttac aaataacgtc caataaaaag
    18721 aaagacggag gcctatggcc cctgtttttc cgctatataa gggagaaaat tatggaaatt
    18781 cgttttgcta ctccttcgga tttagaacaa gttgttttga ttgaaaatgc caatttttct
    18841 aaagaagaac gaatagctga gtctgttctt gccatttatc tgaatgcttt gagtaaaacc
    18901 tgtttaataa tggaacacga tggggaaata gcaggatatt tattatcctg tccctctgtt
    18961 tcgcagactg ttacagacga tattttttac ttgacagaga gtgacatgcc gacaggcagt
    19021 cacctagcta ttgccagtct atccgtagcg gatacctata aggggcaggg agtgggaact
    19081 cttttgttgg cagccataaa agaagtggct ttagcgggag gatttgaagg cattgctcta
    19141 acctgtaagg agtatttgat tggctactat gaaatgaacc agtttgaaga ctttggcccc
    19201 tccttgtcgc aatttggagg acaaatgtgg agtgatatgt actggaaagc cttgtagaaa
    19261 gggaagttct tgcaattcat aagcctttaa gatataatgt atagtaactg tgtgaaagga
    19321 gtaacagcgt gacaaaggat acgaatgaaa aaaacacgca gtcttcaagc ttccgcgatc
    19381 aaattttacg agatttggaa gaattgaagg tgaaacgttt ggcggaacaa tcagcggatg
    19441 ttcttgttga taagcgtaac gaaattatca acgagctcca gcctagtttt gccgaagaaa
    19501 aagcccccca tagagagact gaaattgtaa aagtagaagg tattgctttc cctgattcat
    19561 acttgccaga agaacagcaa gaatcagaag tgatgacgga aagtattgaa gagccaacat
    19621 cagaaacttt ggctactcca gagacttttg tgattgaaaa agaagtcatt tcaagttcgg
    19681 ttcctcaaga tacggtggag cggaacttgg aagagttacg aaaccttgta gcggctaata
    19741 ctgtagaatt tgatgaggct ccatcaagct cattggtttc cgaaccagtt gagtctgtcc
    19801 tttcagagaa gtcttctttg gaagatacat ttttggaatt tccaacggaa gatgtatcag
    19861 ctgtaacggg tgatacagag gttatctcac tggaaggaac aattgtagca acgaaggcag
    19921 tagatccagt tgcagcgaca gaagagcaga tgcaaccaac acagtctaga cgatcatcgt
    19981 cgcacagagc aaacaagcaa cgtcgtaaaa aacaagataa cgctgcgaaa cgcattgtct
    20041 ctgttatcat gtcgattgtt gtagtggcag ttctagtgac aggtgttact ggttatatgt
    20101 gggtaaaatc taatctggaa ccagttaatg caaaagctac agaagctatt caggtagaga
    20161 ttccagaagg atcttcaact ttagaaattg gtaaaatttt agttgacaac aagttgatta
    20221 agaatgctac tatttttaat tactactcta aaattaagag ctataataat ttccaaagtg
    20281 gtttttataa tttaaaacaa aatatgtctg tggatgacat cgcaaaagca cttcaagaaa
    20341 gtggcactcc gacagctcaa aaagaagccg caggtaagat tttgattgtt gaagggtata
    20401 cactgacaca aattgctcag gctattacag ataataccaa gacagaagat aaaaatgata
    20461 aaacaccatt taccacagaa caatttatgg ctactgtgac caaccaagat tttattaatc
    20521 gaatggttgc tacttatcca aaattgtttg ccagcttacc agctgctgat agtggagtta
    20581 tttatcagtt ggaaggttac ctcttcccag cggtttatga atacagcgac gaaacaacta
    20641 tcgaagagct cgttgagcaa atgattgtcg cgatggataa tcgtttacaa ccatattatg
    20701 aaacgattgc tgctaagaat ttgactgtaa atgaagttct taccttggca tctttggttg
    20761 aaaaagaaag ttctactgat gaagatcgtc gaaacattgc aagtgtcttc tttaaccgct
    20821 tgaatgcagc aatacctcta caatccaata ttgcaatctt gtatgctcag ggtaaacttg
    20881 gtcaagaaac aactctggca gaagatgcag cgattgatac atcaattgag tcaccataca
    20941 acatttattg gacaccagga ttgatgcctg gaccagtgga tagtccaagc ctttcggcta
    21001 tcgaggcagt gattaatgcc aacacgacag actatcttta ctttgtagca gatgttacaa
    21061 ctggaagtgt ttactttaca aataatattg atgaacataa ccaaaacgtt gctaagtatg
    21121 taaatgcaca tcttgataat gagtaaattc ttataacaaa attatgtggt tttccacata
    21181 attttgtttt catgaaaaat aaaagaaaag gaaagacaaa tggcagaaaa aacatatcca
    21241 atgaccttgg aagaaaagga aaaattagaa aaagaactag aggaactaaa gttagttcgt
    21301 cgaccagaaa ttgttgaacg tattaaaatt gctcgttctt acggagacct ttcagaaaac
    21361 tctgagtacg aagcagctaa agatgaacag gcttttgttg aaggtcaaat ctcaacaatc
    21421 gaaacaaaaa ttcgttatgc tgaaatcgta aacagtgatg cagttgctgc ggatgaagtg
    21481 gcaattggta agactgtgac tgttcaagaa gttggtgaga ccgaggaaga agtctatcat
    21541 atcgttggtg ctgcaggtgc agatgccttt gcaaacaaga tttcaaacga aagcccaatt
    21601 ggccatgctt tgattggtaa aaaaacagga gatgttgcaa caattgaaac acctgctggt
    21661 agttatgatg taaaaatctt gaaggttgaa aaaacgaaat aaggtgtgga gagggtcgaa
    21721 aggttctctc tttttttata gacaatatgt aaagacctct aattgagtgt gataattcct
    21781 gttagaagtt gattattttt ttattctagt gtacaggtaa atccacgaat tctcaactgg
    21841 gggtctttac atagtgtcta tataagaaaa caaccatctg aaacagatgg ttgcgatttt
    21901 ttatctagaa cgttgtttac cggcgttacg gtttgatttc ttagacgttt tttcttcgat
    21961 gatagcggat gctttaggag taacatcctt cgttttacga ggagttgctg acactgtgat
    22021 atttttgaat tcctcttcca cttgtttacg aatacgaggt ttcaaaatga agtttgtaat
    22081 agcttgttga agaataccga agagaccacc gataacccag tagagagtca ctccagcagg
    22141 agacccaaat gagaacatca tgatcataat tggattcatc agagccatgg ttttcatttg
    22201 ttttttctgt tcttcatcca tgccgacttg cattaagagc gattgggcat agtataaaat
    22261 accagcaaca actgtcaaaa tcaggctagt tgaacctaaa ttaataccaa ggaaagtagc
    22321 ttctgaaatt cctggtgtat ggcgagccgc aaagtagatt gcagagaaga atggcatttg
    22381 aatcagcatc ggcaaacaac caattccgcc gagcatgctc acaccgtatt gtttttgagt
    22441 tgcaaaatac tcttgttgcg cagcaagttg ctcttcttga gagcttgcat ttttcatgcg
    22501 ctcctggatt gggcctaaaa tcggtttgag ataattcatc ttctcagatt ggatagcagc
    22561 tttccaagat tggtaaattc ccaatgggag gatgatgaat cgaaccaata aggtgacgat
    22621 gataatagca agaccaaatc ctagagcttg atcttctgca aaaaagcgaa tcaagttgga
    22681 cattggttgt cccaaccaat cccaaatggg acctgtagga tttccgcttt tatcagtttg
    22741 aacacaacca gataagaaaa gaagagttga taaggccatg cctgacaaga tgagtagacg
    22801 tttatttttc aatttttttc gttcctttgt ttttttcagt atactctcta ttttactttt
    22861 tttgacggaa atatacaagt tttatctata gctaacctga aaatccttat agtcttcgaa
    22921 gttggctagg gtgacatcta gataggtgac tttggccata cgagaaggcc ctttccgaat
    22981 ttcatggata aaatagctga gcttctcagc attatctgac tgagctaaaa tagtgacagt
    23041 tccgtcatca ttattccaaa ctctgccgta gatgtcgcct atttccacag ctaaaaattg
    23101 aacagaccaa cgaaagccga ctccttgcac acgaccagat gcaatcattt ttacctttcg
    23161 cataagtttc tccttttgac aagacattta ctttattata tcatggttgg gtaagactgt
    23221 tcaaaaatca agataattga tttagccgtt gggaaattga agttgctgag cagtaaaaga
    23281 aaaaggggca ttcatggaga tcattcgctc aaaggccaat catttggtca agcaggttaa
    23341 gaaattacaa cagaaaaaat accgtacttc ttcttatttg attgaaggtt ggcatttgtt
    23401 ggaggaagct ttggcagcca aagtacctat tgaacatatc ttggtatcag aagaacatgt
    23461 tcatcgggtt gctggcttat ccaatgtaac agttgtcagt tcagatatta tgcaggattt
    23521 agcagactca cggacaccgc aaggggtagt agctcaactg tccttaccaa atcagacctt
    23581 acccgatgtc ttaacaggaa aatttttggt tctggaggat gtgcaggacc ctggaaatgt
    23641 tggtactatg attcgtacag ctgatgcggc tggttttgat ggagtatttc tatcggataa
    23701 gtcggcagat atttacaata tgaaagttct gcgttccatg caagggagtc atttccactt
    23761 gccagtttat cggatgccga tgactgctat tttttctgct ttaaaaagca atcagctaca
    23821 aatcttggca acaaccctct ctagtcagtc ggttgactat aaggaagtta cgccaaatcc
    23881 gagttttgcc ttggtcatgg gaaatgaagg tcaaggaatt tcaacttttg tagccgatga
    23941 ggcggatcaa cttgtccata ttaccatgcc agggcaggcg gaaagcctca atgtagccat
    24001 tgcggcgggt attctattgt ttagctttat ttaagccaat tgtactatag tgtggtataa
    24061 tattccaacg aggttaacga atggttgcat ataaacaaga taaagaatac atgcattacg
    24121 tggggcactt gattgccaca cccaaggtgc aaaaattggg gaagattcct catcattatc
    24181 actccacgcg cttggaacat tccatcaatg tctcttatac aagctataag attgcgaaaa
    24241 aatttggttg ggatgccaag tcaacagctc gtggtggtct attgcatgat ttgttcttct
    24301 atgattggag agataccaaa ttcaacaaga gccatgcttg ggttcatcca cgaattgcta
    24361 aacgcaatgc tcagaaactc attcaactca ataaactaga agaagacatc attgtgaagc
    24421 atatgtttgg tgcgacaatc gctcctcctc gctacaagga atcctggatt gtgacatgtg
    24481 tggataagta ttgggctgtg agagagtgga gtttgccctt acaacacaag tggaaaaatc
    24541 gtaaggtctt ccgttttcaa taagatgatt taaaggagaa tagtatgaat aacgattcat
    24601 ttattattaa tcaggtggat aataccgccc tcaaccgttt cttcggtaaa atttatggtg
    24661 tggttgccat gggaattggt ctgtcagctc tagtttcttt cttggctgtg accgtctttc
    24721 aatctttatt gcttagtctg ctgagtgcag gctctatcat catgatgctg attatgattg
    24781 gtcagattgc cttggttgtt tctgcttcag caatggcagc taaaaatagc ccaatggctc
    24841 taccaatgtt tcttgcctac tcagtaacaa atgggattac catcagcatg atcttgatgt
    24901 tctataccag cgaaacagtt gttcttgcct ttgtgtcagc ggctcttatg tttgctatca
    24961 tggctgtaat tgggatgaca acgaagaagg atctttctgg tatggctcag gcattgcgtg
    25021 cagctctatg gggaattatt attgcaagtg ttattaatat cttccttcgt agctcaggtc
    25081 taagctttat gatgtctatc atttctgttt tggtattctc aggtttgatt gcttatgaca
    25141 accaacgtat ccgcaatgtt ttcgaacaaa ctggtggtaa tgttggccaa gggtgggtcg
    25201 tatccatggc gcttcagctt taccttgact ttatcaacct tttcctcaac ctactccgta
    25261 tctttggtgg tttgagtaga gactaattat gacatataaa aaaagagggc atccctcttt
    25321 ttttatatgt cgtttgttat gctagagctc ccattggatc ccatggggca aggacttgtg
    25381 gttgagcttg ataagctgct aattcttctt gtgtgaggaa ttcttttcgg acaacaatct
    25441 gataagtgta ctcatccatc cagctatctg atgcgacgaa gtatcccttg tcaccaacct
    25501 tgtcacccca agagttttcc actttccatt tgagaggttg ctcattgtca tctaaatcaa
    25561 caccagttaa gaccatagcg tgggtcatca agctctcgga gtagtctaat cttccagcct
    25621 tgtcttgatg gaaacggata cccagacctg aagagaagtc gtaggtgttg gttgccataa
    25681 taccagtttg acggttgctg ctttgaccga catcggaacc aaaccaaacg gactcaccag
    25741 ctttgagttg ggcaatagcc agttctttaa accggttcat ttctacattg agatagcgga
    25801 cagcaggggc gccaacgacg ttccccaaca attcgactgt ataagattta ttgtagggtt
    25861 tgtcagttgt aggagcattg ataatggaga catagtcaga tagtttcaaa ccaacgtatt
    25921 tctcgtagaa tgcctgaggt gttacatttg tgtcgcggtg atagacattg tctttatctc
    25981 tatatgcaaa atcaaagcta cgtggaggga gtccaaggtt aacggctagg aagttaaaga
    26041 tttcttgaag caagttttct ttttgtgttt gaacctcttc cggagatgct cctttggcaa
    26101 ggaggtcacg caatagttgt gcatcttgac ggagcaattt gttaaggtac tgattgagct
    26161 cacggctggc actggatgag atagattctg gatagacgga tttcggtacc acaccatatt
    26221 tttcaaataa ggcaacaacc atatcccatt gaccgccatc ttgttgaggg gtatccaata
    26281 agaattttac cttacggctc ccaatttctt ggtcagctgt agcaatgatt tgttcgagga
    26341 accagttgga cttttcatat ttatcccaaa agaaggtatg ggcctgtgat agctcaaaat
    26401 tctccagttt gaagtcagag ataagtttgt ggcggaaggt gtttaatgca gcaaacatcc
    26461 agcaacgtcc agaagccttt tggtttgaaa cagcgtcctt tgtcaagtca attgaaaaga
    26521 catagtcatt gtcgatggcg ctttggcgtg tttctaagga tttcaaaagt ccgttgtggc
    26581 taacggcatt ttcggttgcc tgtaggctgg gattagctag atagttggca tacaagcgtt
    26641 ctgtaaaatc aaaatctaat gttgacatat attactcctt ttttaatgat aatcacatta
    26701 tagcgctaga aatttatttt gcaagtattt ggtggagttg aaagctacag ttcctcacat
    26761 atttgtgata taataagaaa aatattttga tgaggtagag atatgaccaa gacaccattt
    26821 gttagtaaag aagttttaga aaccattacg gagcaatttc cgactccttt tcatttgtat
    26881 gatgaaaaag gcattcgtga gaaggcgcgt gcccttaatg cagctttttc atggaacaaa
    26941 ggctttaagg aatattttgc ggtcaaggcg actccaactc cagctatttt aaaaattctt
    27001 caagaagaag gttgtggagt ggactgtgca acagatgtag aagtgctgat gagtgaaaaa
    27061 ttgggcttta aggacatcat gttcacatcc aatgataccc aagcccaaga atttgtctat
    27121 gctcgaaaag ttggggcgac cattaacctg gatgcctatg agcacataga atttttgaaa
    27181 aacgtagctg gcattccaga aacggtctgc ctgcgttata atccaggtgg tatattctca
    27241 ctgggaacgg atattatgga ccatcctgaa gagtctaagt ttgggatgac caaggaacag
    27301 ttgatgaaag gatataagga gttaaaagaa ttggatgtca aggaatttgg aatccatgcc
    27361 tttctggctt ctaacaccgt taccaatgac tactatcctg tcttagctcg tcaactcttt
    27421 gaattagcct tggaaattcg tgaggaaaca ggtgtgacct tggacttcat caacctatca
    27481 ggtgggattg gggtcaacta tcgtcctgag caagaaccaa acgacattgc tatcattggt
    27541 gagggagttc gcaaggttta tgaggaaatt ctcacgccag ctggtatggg gcatgtcaaa
    27601 atctttacag aattgggtcg ctttatgttg gcgccacatg gtcacttgat taccaaagtg
    27661 cttcatcgta aggaaaccta tcggacttat attggtgtcg atgcttcggc tgccaacctt
    27721 atgcgtcctg ctttctatgg cgcctaccac catatcacaa atatcacgcg cccagatggg
    27781 ccaatcgaag tggtggatgt ggcaggatcc ctctgtgaaa acaacgacaa gtttgcggtt
    27841 aatcgtgaat taccacgggc agaagtagga gacaccttgg tcattcatga cagtggtgcc
    27901 cacggcttct ccatgggcta caactacaac ggtcgtctgc gttcttctga aattcttttg
    27961 caggaagatg gcacagcgcg tatgattcgt cgtgctgaaa ctcctgagga ttatttcgcg
    28021 accatttacg gttttgattt tgacaggtaa gtcttggaaa agccttctga atttggtata
    28081 atagaagcag ttatgtagaa ataaagattt gaggagattg atatgcaatt aggtatcggt
    28141 ttagtaattg ttttggtgct tgtggcattt gcaggtggtg tagccttggg tatttacttg
    28201 tctcgcaaac aagtggaaaa ctacattgct gacaagccag ttttggatga aaatgctttg
    28261 cgtttgatga tgagccaaat ggggcagaaa ccaagcgaag caaaagtaca acaagtactt
    28321 cgccaaatca agagccaaca aaaagtggca agcaagaaaa aataatcaaa ctgggactgg
    28381 gatattcatt cccagatccc attttttgag tagaaaagaa aggctagtca gattttctgg
    28441 ctattctcaa tgttatggat aatcgaccaa taggtttttt agattcaggg gttgggggat
    28501 taacggttgc gcgtgagtta atgcgccaac ttccccatga agaaatcgtt tatatcggag
    28561 attctgcacg agcaccttat ggaccacgtc ccgcggaaca aattagagaa tatacttggc
    28621 agttggtcaa tttccttttg acaaaaaatg tgaaaatgat tgtctttgcc tgcaatacgg
    28681 caacagcggt agcctgggaa gaagtcaagg aaaagttgga tattcctgtt ttgggagtga
    28741 ttttaccagg tgcttcggca gctattaagg caacgcaaag tgggaaggtt ggagtcttag
    28801 gaacggctat gactattcaa tcagatattt atcgacaaaa gattcaggcc ctttctccag
    28861 aaacgcaggt agacagtctg gcctgtccca aatttgcacc actggttgag tccaatagcc
    28921 accaatccag tcttgccaaa aaggttgttt atgagacact tcgcccactc gttgggaaag
    28981 tggacacctt ggttttgggc tgcacccatt atcctctgct ccgtcctatt atccagaatg
    29041 ccatgggtaa ggatgtcaag ttgattgaca gtggggcaga gtgcgcgcgc gatatttctg
    29101 ttttattaaa ttattttcaa atcaaccgca gtcgtaccga aaaggatatt cagcacagat
    29161 tttacacaac agctagtccg gcagctttta aagaaatagc tgaaagctgg atgggcattg
    29221 atattcatgt ggagcatgta gaactatgac agacaagatt tacgaataca gagatgagca
    29281 caattggttt attggtaagg ctagttttgc caacctattt ggttcatttg gtgaaaatgg
    29341 aagagagcag gaaatttacc agattggtca attgtttgac aaactaattg ctggtaatta
    29401 tgaagatgag aattttaacc agtgtgtcaa cattgaagtg atcaaacttc agtcggactt
    29461 tgccctcttc caatttgcct gtgatatttt gaatgagtta aacaatcgtc aattcaaggt
    29521 tctccaacac caaggagcta ttctggtaac agagaatgac aaacttctct tagtccatct
    29581 gcccaaagca ggagttagca cggtagattt cttcggtcaa gacaagggat tggcaagcgt
    29641 gggagatacc atcttgattg ccaccaaaaa tgaaggtaag accaaggaat ttcgtaagtt
    29701 ttttgaacga tttggctacc aggtcgagaa cctcaacaac tatcctgacc tgccagatgt
    29761 agcagaaact gggatgactt ttgaggaaaa tgcacggctc aaggctgaaa ccatagcaga
    29821 gctgacaggc aagatggtct tggcagatga ttctggtttg aaggttgatg ctttaggtgg
    29881 tttgccagga gtttggtctg cccgtttttc aggcccagat gccacagatg agctcaataa
    29941 tgccaagctc ttgcacgagt tggctatggt atttgaactg aaagatcgtt cggcacaatt
    30001 ccattgtact ctggtcatgg ctgctccaaa tcgtgatagt ttggttgtcg aagcggactg
    30061 ggaaggcttt atcggtatgg acctccgtgg ggaaaatggg tttggatatg atccactttt
    30121 cctcgtaggc gaaacaggta agacctcggc agaattaacc ctagaagaaa aaaatcagat
    30181 ttcccaccgt gcacaagcac tagaaaaatt agtggaggca tttccagtat ggcaggagca
    30241 agcaaaacaa tcctagtcat gagtgattct catggggata gacagattgt agaagagatt
    30301 aaaaaccact atcttggcaa ggtcgatgct atctttcaca atggtgattc ggagctggac
    30361 agtcaagata gtttgtggga cggcattcaa gtggttaatg gcaactgcga ctattttggc
    30421 ggttatccag accagctcat tactcaattg gatggtgtga ctatcgctca gactcatggt
    30481 catctttatg gcattaatta cggctggcag cggttggatt attgggcaca ggaagttgat
    30541 gcggatattt gcttgtatgg gcatctgcat gtgcctgatg ccgaagtgcg tggtaagacc
    30601 ctcttcctca atcctggctc cgttagtcaa cctcgtggtt tggtcagaga atgtctctat
    30661 gctcttgtga ctatctatga tgatcacttc catgtggatt attacaatcg acagcaccaa
    30721 ctttacccag cattgacaaa ggatatttca agatgattgc aagagaattt gaagcctttt
    30781 tattggacca ggaagaaacc ttcttgacac cagcggataa attggcagta attattgata
    30841 cgcataatat tgaccatgca aaactgttac tcagtcacat gacctattca cgcgtacctg
    30901 tggtaacaga agatggtcgt ttctttggca ccattggctt gacggagatt atcaagtacc
    30961 aggctgagca tgagttatca gatgatgaat tgaacacgga tatttccttg attgccaaga
    31021 cagatgaaga gacggttggc cttgactatg acttgacaga agtcatgcgc aagctagtcg
    31081 accaatcctt cctacccgtt ctaggggaaa atagggaatt tctaggcatt attacccgca
    31141 aatctattct gaaagccatc aatgcgcttt tgcataattt tcccttggca tcaaaagaag
    31201 gcaagaaatg aagcaggcga ttgaatcttt tatccagagc aaaaaggtca gtgtcaacag
    31261 ccaaaagtcc tatacctatg acctgcagca gtttgtgaca gtaacaaagg gggagattag
    31321 ccaacagtct cttttggtct atcagcagtc tcttctagac ttgaaacctg ctgctcagaa
    31381 aagaaaaatg tcagcggtca atcaatttct ctactttctt tatgaaaata atctcctgga
    31441 tcgtttttat aaattacaaa cgatgtcagg tccagccagc gtcaaaaaga aactggagcg
    31501 tgaggattta actctcctct ttcaagaaag tccttggctt gatgggcaac tgattgctct
    31561 tttgattgcc ttactagggc tgactcctag tgaaatagca gagctgacta gtcagcaggt
    31621 caatctggat tttcaagtcc tgacagttga gaagggagca accaagcgcg tgctcactct
    31681 acccaaggaa ttgataccct atatggagtc tcatctgtct ggacgctatg tcttcgataa
    31741 gaagggacag acctattctc gtcaatggtt ttttaatcat ctgacagaat ttgtccagtc
    31801 catcggcaag cctgattgga cagcccaaaa attgcgggag cagtatattc taaaacaggt
    31861 agacgaagga aaatccttgg accaaatcgc caagcagttg ggactaaaaa caagcatgag
    31921 tttggaaaaa tttagataat ggatataaaa ttaaaagatt ttgaagggcc acttgatctc
    31981 ctgctacacc tggtgtccaa gtatcaagta gacatttacg aggttccgat tacagaggtt
    32041 attgagcaat atttggtcta cattgctacc ttacaagcca tgcgtttaga ggtagcggga
    32101 gaatatatgc tcatggccag tcaattgatg gtcatcaaaa gtcgtcggtt attgccgaag
    32161 gttgttgagc aaattgatcc cgaagatgat cctgaaatgg acctcttgga ccagttggaa
    32221 gaataccgca agttcaagct tctcagtgag aaattagggg agcaacatga tgaacgggcc
    32281 aattattttt caaaacccaa attagatttg atttatgagg atgttcagct ggccaaagat
    32341 aaaactgtca ttgatatttt ccttgccttt tctaaggtca tggctgaaaa acaggcaagc
    32401 ctccgtcaat ctcatgcgac cattgcccgt gatgaatata aaatcgaaga catgatggac
    32461 tttgtttgca gtcgtttcga gactggtcca cgccttgaac tccgtcagct ttttcaagaa
    32521 agtcaagatg tcaatgaaat gattacgatt ttccttgcga ctctggaatt ggtcaaggtt
    32581 catgaaatcg tcttggagca gacagagact tttggagata tttatctagt aaggagtgaa
    32641 gatgaatcgc ttagctgaaa tcgaagtcct gctctttgtg gcaggtgagg atggcttgac
    32701 gttacgaaat ttggcagaga tgttggaaat gcagccgaca gctgtcagcc agcagttaga
    32761 gaaactcagt gaaaaataca tggccgacca ggcatcagga ttggctctct tagaatcctc
    32821 caatcgctac aagttggtca ctaaaaaaga gtatgcaaac cttctgcgta tctatgccaa
    32881 aacaccaatc aatcagacta tgtcacgggc tcttttggaa accttatcaa tcgtagccta
    32941 caagcaaccc attactcgga ttgaagttga tgatattcgc ggagtcaatt ccagcggtgc
    33001 catcagtaaa ttgcaggcct ttgacctcat tcgtgagaac ggtaagaaag aggttcttgg
    33061 tagaccaaat ctctatgtga caacggacta tttcctggat tacatgggaa ttaatagtct
    33121 agaagaattg cctgatgtgt ctgaaataga tttgattcaa gaagaaacag agctattcgt
    33181 agaaagaaat gagttagaaa atgagaatta ataaatacat tgcccatgct ggagttgcca
    33241 gccgtcgtaa ggcagaagaa ctaatcaaac aaggactagt tactgtaaat ggtcaggttg
    33301 ttcgtgagtt ggcaactact attaagtctg gagatattgt ggaagtcgaa ggacaaccaa
    33361 tctacaacga agagaaggtc tattatctcc tcaataagcc acgtggtgtc atttctagtg
    33421 tgtcagacga caagggacga aagactgtcg tggacttgtt gccaacagtt aaggagcgga
    33481 tttatcctgt aggacgtctg gactgggata catctggagt cttgattttg accaatgacg
    33541 gtgattttac agacgagatg attcacccac gaaatgagat tgacaaggtt tatttagcgc
    33601 gtgtcaaagg ggttgccaac aaggaagttt tgcgtcccct gacccgtggt gttgtcattg
    33661 atggcaaaaa gactaagcct gcggtgtacg agattatcaa ggtggatcct gttaaaaatc
    33721 gctcagttgt agaattaaca atccatgaag gtcgaaacca ccaggttaag aagatgtttg
    33781 aggctgtcgg cttgcaggta gataaactgt ctcgtactcg ctttggtaat cttgacttga
    33841 ccggcctacg tccaggagaa taccgcaagc tcaacaagaa agacatcagt aaactacata
    33901 ccctggctgt tactaagccg gtaaaaaaat aatgactaga cttttgatcg gcttggtccg
    33961 attctatcag aaatttattt cccccctctt tccaccttcc tgtcgctatc agccgacttg
    34021 ttcaagttac atgatagagg ccttacagaa acatgggctc aaaggctttt tgatggggtt
    34081 ggctcgaatt ggtcgctgtc atccctttgt ggaaggtggg gaagatcctg tgccggacag
    34141 gtttagtttg aaaagaaata agcagaagta gggcaaccta ctttttgttc tgtataaata
    34201 taggttttta ggttgccttt agtactctct caaaaggttt gggatggaga tagggcgaac
    34261 tctgagaagc gaggttggtc tttttgccca gcctccgctc gtcgaaggaa tcaaaagtaa
    34321 accaaatgac tctccatttt gttacagaca agactatact tatccgagtt cattgagtat
    34381 tgggcttagt ggactatcat aaaaaatgaa gaagcaatag tggctgaaga ggtactcttt
    34441 tttacctcta ttcgctgcta tttttagtta aaatggaaaa aagtgagaat actcaaaggc
    34501 gaatattgtt ggtaagatag ttgcatattt atgctaaatc gtgctatact attcaaaata
    34561 aataaatggg gtagggatat gaaaagaatg aaaaacatcg ctttaactgg tatcggtctg
    34621 ctttctattg caacgttaac agcttgtcaa actaaagaaa agacgagcga tgttgctctg
    34681 acatttaaat cagaagtgac acacgaagga caaactattg aaggcggaag tctcaaatat
    34741 gccttggtag cttcggcacc ttcgaccggt atcttaattg atgaattatc gcagacggcg
    34801 gtagactcaa cctttgcagg catggttgat atttctatgt ttggatatga ttcagctcgg
    34861 acgttagacg attcaggcct tgctaaggca gagtttgatg tagacgcaaa gacagttacc
    34921 gttagtttga caggaaagga ctataagtgg tctgatgggg aagccttcac catcgatgat
    34981 tatattttca caatcgaaca actagctagt ccagactata caggggttcg tgcagatact
    35041 acctatacaa atatcattgg ctttgaagaa tttcaggctg gaacagtaag tgaaatttca
    35101 ggtgttaaga aggttgatga ctatacggta gtcctctcag tgaaagacat gtctccatcc
    35161 atgatgtatg ctggtggggg tgtaccttat ttagtcatgc cgaaacacat ttttaaagac
    35221 attgcagtca aagattggga atcaagtgag tattctcgta cggcaaaagt tgtcggtatg
    35281 ggcccttata aggtcaagga aattgtcaat ggcgagtcgg tgacctatgt accaaatgag
    35341 tactatttta aagggaaagt taagctagat agttacagga ttgatattgt ttcaccagat
    35401 acgattgttg cagaaatgag agcaggcaat tatgatattg ctgatatgcc aacagaccag
    35461 tacgaatctt acaaggactt atcaaatatt actttgctag gtagtctgga tggtatttac
    35521 aattatattg gcttcaatct tggtaagtac gatgatgcta gtggtaagaa tgtgaccaat
    35581 cctaatgcta agatgaataa tgttaaattg cgtcaagcaa tgggatatgc gttggacaat
    35641 gcggtgattg gagagaaatt atataacggc ttgtatcacc cgacaaactc actaattatc
    35701 tctttctttg gagatgttca cgattcagaa ctagctggct atagttataa tcctgaaaag
    35761 gctaaaaaac ttctcgatga ggcagggtat aaagacgtag atggagacgg tatgcgtgaa
    35821 gatgctgatg gaaaaccgct taccatcggt gttgcagcac agaaatcaac cgaaacgcaa
    35881 gaaactatgg tacagcaata ccttacatgg tggaaagaaa ttggtttgaa tgtggaactc
    35941 tatacaggaa gaactattga gtacaatact ttctatgaat caattgctgc caatgatgag
    36001 gggattgatg tctatcttgc agcttggatt gccggcctag atccagaccc gacatcattg
    36061 tggggacctg aagcgatgta caactatact cgcttcgttt cagatgaaaa cacagcactt
    36121 ttaaataaaa ttacctctgc tgagtcattt gacgaacaaa aaaatattga aaactacaaa
    36181 gcttggcaag aatatgcctt cgaacaagcc tttgcaattc caacctttga acgtgaaagt
    36241 attactgccg ttaacaaacg cgttaaatat tacgacgttt atatcggttc ggacagtaaa
    36301 tcaggccatg aaaatcttga gttgactgcg gaaaaaggga ttgcagcaga ataaatgtaa
    36361 gaaaggggag tttatttgct ctcctttttc attttctatg aaaatttgaa aaaaatgggg
    36421 caaaactctt gcttttcagc cttctttaag ctacaatagt atcacgattt cattgattta
    36481 actcaaacct gttgtgagtt aagtgaatga atcatcattc accatgctgt ttgctgagct
    36541 tgactccggg cagtgtggct atttttttgt cttgccatag gagacagtcg agtcttttta
    36601 ctcaatgaaa atcaaaaaaa gaaactagaa aacaagcagc agactgtact gatatacggc
    36661 aaaatgaagc tgacatggtt tggatttgat tttcgagggt attcgtgttt agtgaaatgt
    36721 caccagagag gtccttatga atattgaaac attagagtat atagaagaaa cagccaaaaa
    36781 ccacattgtc ttatttgaac cacagattcc acagaataca ggcaatattg ctcgaacttg
    36841 tgctgcaacc aatagtcctc tccatatcat taagcctatg ggatttccaa ttgatgaccg
    36901 taagatgaaa cgtgcaggac tagattattg ggataagtta gatgttcgct tctatgacaa
    36961 tttagcagaa tttatggatt atgccagcaa acaaggacgt gttcacttag tatctaaatt
    37021 tgctgataaa acctattcgg atgaagacta taatgatggg aacattcatt atttcttatt
    37081 tggtcgtgaa gataagggct tgccagaaga ttttatgcgt gaacatccag aaaaggctat
    37141 ccgtattcca atgaatgatg aacatgtgcg tagtcttaat gtctctaata cagcgtgtat
    37201 gattgtatat gaggctcttc ggcagcaaca gttcgttggt ctagatttgg ttcacaccta
    37261 tgatggggac aagttaaaat agtgaaaact taccaagctc ttgcaaatgc aaggcttttt
    37321 tggtatgatg aaatagtctt cagggcaggg ttagattccc gaccggcagt gatttttttg
    37381 attcttgctt ttctttttct ctcattcgtc gttgaccagg cttgcctaac tccagttatg
    37441 ccttcgcctt gtcgcctaga ctgatagaaa aatcttaagc aacactcaaa aaagtgtttt
    37501 tgtttcattt taggactagg caaggaggag cagactatac taagggtatg tcaagccgac
    37561 ttaacgaagc cataaaatag aaagaaagac acgtacagtc tgcgagcgaa agctgatgtg
    37621 gtgcaattcc acaaccgaca gtaaagtctg gatgggagaa gacgaagtgg aggctttttg
    37681 cctgctcttc cacgcttctt caattttcaa aaattggagg aaccttatga caaacacacg
    37741 caaaatgacg attatcgcca ttctctcagc agtatccttt ctgctcatgt atttgaaatt
    37801 tccgctgatt ccaacagcca gtttcctgga agtggatttt tctctcgtac cgattttatt
    37861 tggtctgctt gttctagata tgaagtctag ttttgctatc cttttggtac gaacttttct
    37921 caaactgatt ttaaataatc agggaccatc gacaattatt ggcttaccga tgaatattgc
    37981 agctatgtca gttttcattt tagcagtagc ttatttctgg aaaaatgaac aaacgttaaa
    38041 aaattattta aaagcagccg ctgttgcgac gcttggttcg acagcagtga tgctggtatt
    38101 aaattacgtt tatgcggtgc ctgtttatgc agcttttgca aattttgata ttaaagaaat
    38161 cttgggtctg actaactatc tttttatgat ggtacttcct tttaatcttt tacaagggat
    38221 tgtgctttcg gcaatatttt atatctgtta caaagcagcc caacctattt taaagaaagt
    38281 ttaaccttta taaggtaaac tatactgtat gaagaataaa caaatccatt tacgaaatgc
    38341 atcttttttt gctctagcct ttgtgatatt gggctatgta gtaaaatttt atcctactac
    38401 cctagcaggt tttgactcga ctgtccagtc tgccattcgt ggaaatttac caagtggagc
    38461 cagtcaattt tggacctcta ttactgtttt aggaaatacg gttattattt tagctattac
    38521 cttgattcta gctgctatct tttactacta taaaaaatgg aagatagaag cttatttcct
    38581 acttgctagt tttgcggcga tgggtgtggc atccacagcc ctgaaatatg tctaccaacg
    38641 tccgcgtcca agtattgaat ggttgattga taccatcggt tattcatttc ctagctggca
    38701 tactgcatca actatgatga ttgcaggagc agttgttatt attgttcacc agaggatgaa
    38761 gaaaggcata gctagacttg tgctacaagc cgtgttgatt ctacttgctg tcctggtagc
    38821 tgtatcccgt atctatattg gggttcacta tccgacagat attatcggtg gttggctact
    38881 tgccgtcact cttttacaaa tgatgtatcc attttacgat cagaaacgct ttgaatggcg
    38941 tttccaaagt aagcaaaaat agtcaatttg acaccaactc ctactgtaaa aggtaggagt
    39001 tttaacttgt catctttcta ttatagtcat ttgaattaac tttgatacat cgtcactttc
    39061 ggcttgccgt accctgcaga agtgacttgc tttgcaagtt atatctccaa cctagcacag
    39121 ccactaggct gtgctagcaa cctgcacctc agttccttgt ctgaaagcta attcattcga
    39181 ctatatcgtt acttcgcttt gccgtccttt gtagaagtgg cttatttcac aagatttatt
    39241 gagactgagc tcaggcacag cgccatttct tagagttcgc gctggactta tcggaaaatc
    39301 gtgcaaaaat cctccgagaa attctcagag gatgatgatg tataaatcta gtttttgatt
    39361 ggaccatcag caacggcttc aacagcattt tttatcgttt gggcgaagac ttcgcctcca
    39421 ttactttcaa gattgaaatg aacaaggtcg gtattgtacc aaattggtgg attatccttt
    39481 gcaacttgat accagtctgc aatggaaatg taatcatatt tttcagccaa ttctttctcg
    39541 tattgaccag tttgataaga aatggattcg ctcggaggga agtttccatc gtaaggagtg
    39601 acaaaaataa ggcgacgtcc tttaggaaaa tctttgacta gctggtctag tagttcctga
    39661 taattatccg tagtatttgt acctagggct acaactacag tctctttcaa gctattattt
    39721 tgcttataaa gatttatcaa tttagcaatt tcagagagat ttcgactgac agttccatcg
    39781 atctgtgcat ctggtagcgc ggtctgtatg gcagcacttg cgcgaacagt aacagaatcg
    39841 ccaaagatga taactccttt ttgaatttca aaactagtag ctttagcgtt ttcagcagca
    39901 gatcgtgttg tatttagttg ggtctgagct tgataaagat tgctaaccat gctctcttgt
    39961 tcaaaacttc ctaattttgg tgcaaacaga cagataccta agccaactat ggtcaagcaa
    40021 gcaaagctac caagaagcca ttttttatat ggtttcaaat ccatgggtaa tccaaacaag
    40081 cttcctactt ttccagcaat atatggttct agaatataga aggaaatagt tgataggata
    40141 atagaaaaaa caaaggataa tcccgcagcg atagtggcat ttgtcagttg tgtaaagata
    40201 atgagcaagg gccaatggaa gaggtagata ccataagaaa tacttgaaaa gaagaggata
    40261 attgcaggtt ctttgacatc ttcggttttc tcgtgaagta cccgagcagc aaaaatcata
    40321 gttgctgtag ctaaactgga tagaagaaaa ccaattagat aggtccagat ggaactgaat
    40381 tgaagagtaa agagaagaag aagttctact cctagtcctc caagaaacag acctatagct
    40441 tgtttgatag tcaatgtatt cacttgttgc tggaaggcag ttgttgtatt tccgatacca
    40501 gcgatggttg cgagaatgct tccgaggaag aatgggaagg tatgtgtgaa gctcgagtag
    40561 taaatggttg agaaattatc cacaaagaaa cttgagatag acattgctaa aaaacttagc
    40621 gagaagaggc ttatagatgt tagaaaaatt gatccacgta gttgccccac actttttgag
    40681 atgcgagtca gataccaaac taaaccagcc cagacaaggt aatactgaac ttctatggct
    40741 agtgtccaag tatgcataaa tagatgaggt gaaaattgat tctcgtaact accacctgat
    40801 agaatttcaa agaagtttgt catgaatccg agcgcagcgg ctatctgatt gccgatattg
    40861 gcaatgaaat cattgcggac aagcagagca agtggaagaa ccaaaagaat cgttaaaacc
    40921 agagggggga gaatccgata gaaccttctt ctgaaaaagc tgacaatatc tattttttta
    40981 tgttttgcaa actcatcaat caaaagggcg gttgtcaaat atccagacag ggtaaagaag
    41041 aggtcaaccc caacaaagcc acctgggaaa tatttgataa agaaatgata gagtaggaca
    41101 aagactaatc caatcacacg tataacggat aaccatttaa ttttcatatt gataaatccc
    41161 ctgtttaaaa gttccttcgt agatagcctg tccttcggtg gtcaattttc cttttccatc
    41221 ggcatagccg tttttaaatt gcccggtata aacccaccca cttgcagatg tgtaggttcc
    41281 ttgaccgtgg aaaattccat ttgtaaattg tccttcgtag acatctccat tatcaaaggt
    41341 caattttcct tgaccattca ttttatttgc gaccacataa ccgttgtact gcagggcgcc
    41401 attattgaaa gtcatggctt gcttgctggc aattcgccct gtaaatacag agagggcaca
    41461 gatgaggatg ataataaggg agaggatttc aagttttgga cgggtgaaat aacttgttat
    41521 atcatgccat tttatactag gtaatttgaa ctctttcatc gttttactct ttcataggat
    41581 ttgaccgacg ctaatcagtt ctttctagga tacagtaaga aattatcagt tcagtcagaa
    41641 atagtttacc atttttttac aaatattaca aaaatattac atagaaaatc ttattcttgg
    41701 tcaaatgact gtaacctgtc caaccagtct tggcaacctt tctttaccat ttcgtaggtt
    41761 tcgtcaaaat ctccagtata ccaagggtct ggtacggatt tttctgcgaa ttgaaaaatc
    41821 ttattttggg catgtgctgg tgccattttc tgtaaatctc ggacattatt gctgtccata
    41881 ccgatgataa catcaaattc ctcaaagtct gcttgagaga tttgttgaga agttttggtc
    41941 ttgtcatagg gaatcttgtg cttttggaaa attttctgtg ttccagggta gataggatta
    42001 ccatgctccc agtttgaagt ggcacggctt tcaatatgaa attgacttgt cgtgtctttc
    42061 atgacaaatt cagccatagg gctacgacaa atatttccaa gacagacaaa aacgattttt
    42121 ttcatagatt ctcctttcgc ggcataagaa aagagaaggc agactcgaca ggtaaatgtc
    42181 tgagttcccc tctcttgcat atttttgttc gggctatagg taaaagacca aattaagtgt
    42241 aatgttcatt atcaaacaat gcacgaccaa tcctatctat attgaactct ttgtttattt
    42301 ctcttctttg tcgaaagcat ttttgatgcc gttaatggca ccttcaagcc cgtcttttgc
    42361 atcttcgact agctcttttg ctttgccaat tcctttctca acaagtcctt caacttcaat
    42421 ttccttgtcg ccggtcagct taccaattac ctcttttgca gagccagata gctgttctag
    42481 ttttgcgtca aatttttctt ctgacataaa atccctcctt gatatacaca tatgggggcg
    42541 atgattttct aaaaagaaaa tcacatacta ttcttactta ctagtctatc gtatataagt
    42601 taatatagca agggatttgt ctgccaataa gtcagaggat gagggataat tcttgcattt
    42661 ttctcttctt ttatttataa taattataaa taaaagaaag gatgatatat gatgaaacaa
    42721 aaatattatc aatctccagc agaaattgct tccttcagcc cacgtcaatc aacagcattg
    42781 gctgatacca aggcagtttt gaatcaggca gtagcagatt tgtcagttgc ccattctatc
    42841 ctacatcaag ttcattggta tatgcgtgga cgtggtttta tgatttggca tccaaagatg
    42901 gatgaatata tggaagaaat tgatggtttt ttggatgaga tgagtgagcg tttaatcacc
    42961 ttaggtgggg caccattttc tacccttaaa gagtttagtg aaaatagtca gctcaaggaa
    43021 gttcctggtg attacactgt aacgattgaa gagcaattgg cgcgtgtggt agaggtgttc
    43081 cgctatctgg ctgctctttt tcaaaaggga tttgatgtca gtgatgaaga aggtgacagc
    43141 gtaaccaacg acattttcaa tgtggctaag gctagtattg aaaaacatat ttggatgttg
    43201 caggcagaac ttggtcaagc tcctaagttg taaacagatg aagggtccag taggactctt
    43261 ttttgatgca gatatgatat gacatttgtc acatgagtca atgacaaagt cttctagtgc
    43321 gggcttcatt ttcgagatat actatgtatg taagatgttt aggaaatagg aggtagaaag
    43381 atgatagaag tacgagcgct aaaaaaaatc atcaaaggac ggaccatttt gtctgatatt
    43441 tcctttgaga tacagtctgg ggaatgtgtg gctttgattg gtcccaacgg agctgggaaa
    43501 acgacgctta tgtcttgttt gttgggagat aggaaggtga cgaaaggcca ggttttgttg
    43561 gacggtctgg ctccacaggc tcggtccaat aaagaaacag tagcagtttt acctcaagaa
    43621 aatgctatcc cgacagacct gaaggtcaag gaattgctcc gctttttcca agccatctac
    43681 aaggacagtc tgacagatgt ggaaatcgac agtctgctcc gcttttcccc agagcaaaaa
    43741 aatcaactgg caggcaagtt atcgggtggt cagaagcggc tcttggcctt tgtcatctgt
    43801 ctgattggca agcccaagtt gatctttttg gacgagccga cggcgggcat ggatacgtcg
    43861 acccgtcagc gtttttggga gattgtccat gagctcaagg ctgagggtgt gaccattttc
    43921 tataccagtc actacatcga ggaagtggag catacagcgg agcggattct ggtcttacat
    43981 caaggccgac tcttgcggga tacgacgcca tttgccatgc ggagtgagga gcaagaaaaa
    44041 gaagtgacgt tgccgattgc ctttgcggcg gtggtggaga gcctggctga aatcaatgaa
    44101 atcagctata aacaagatac ggttagcttt aagacccgag ctattgagca ggtttgggcg
    44161 aatttgcagg aggcaggctg tcggatttca gacctagagg tacagaacaa aaccctgctc
    44221 aacagcctat ttgacaagac gagggaggaa gaatcatgaa agcattagtt caagtagagg
    44281 cggtaaaatt atccagaagt ttgggagtat ttctcctgtc tatcggcatg cccgtcatct
    44341 ttttcctgat tttctcatca acggtccagt ttgatgatgc gaccatgcaa aaggcctttc
    44401 tccagtccta catgctgacc atgacaggct tttccatgtc gggctttgcc cttttcacct
    44461 ttcccacgat gctggcagag gacagaaaga atagctggtt gacctttatc cagcattcgc
    44521 ccttgccaat ctggcaatac tatctttcca aactcgtgcg ggttttactc tgctttgtgt
    44581 cttctattgc cattgtcttt gcggtcggag gtttggtcaa gggagtagac ttgtctgctc
    44641 aggaatgggc agtatcagct ttcttgctcc ttgtaacctc tatcgtattt ttagccattg
    44701 gcttgctctt ggtgcaaatc cagtctgaac aggccatgtc ggttgtggca aacttgctct
    44761 actttgttct ggccatcatg ggtggctcct ggatgcctgt ttccctcttt ccagactggg
    44821 tgcagcggat ttgcaaactt atgcctagct accatgccaa ccagctggtg accacctatg
    44881 tccaagaggg agattttctc tggaaatcct tgctaattgt cctaggctat gcgataattt
    44941 tcttaggaat tgctctgatt ctgaatagaa aatcggagca acagtgaggt gacagatgat
    45001 atttgaaaaa agaaaggtac cactcatgtt cttcgtgggc atggtctttc tctattttcc
    45061 cttttactat gcccagtata gtcccaatcc gacggcagtt gtcctagcga ctattctctt
    45121 tgccttggtc tattgttctc tgttttacac tgaccataag ctctattcca tgctggcttg
    45181 gttttacctg attggctata tcgccgtcat gagcttttgg ggcaatctgc aattctccct
    45241 ctttatcttc aacctgtcca atatgctggg ctggtattat aaagagaaca ggccgaccta
    45301 tcggacggtg tcctatggga tcttgttact ggccattatc ctctgggctc tctttggccc
    45361 tgttcccttt gaaatgcggg cctttgcact tgttattcac tttttcggct tggccttgct
    45421 gattttcagc tggattgaga ccaagcgggc agcccttcag caacgcctac aggagcagaa
    45481 tgcttccatc aatctcctgc tggctgagaa tgaacgcaat cgtatcggtc aggacttgca
    45541 cgatacgctg ggtcatgtct ttgccatgct gtctgtcaag gctgagctgg tccagacttt
    45601 gttagaccac gaccagattg accaggccaa gaaggaggtg gcagaccttc agaccttggc
    45661 caaggactcc atgcaggagg tccgccagat tgtccagtcc ctcaagcagc acaccgtggc
    45721 agaggaactc cagattttac agcagatgtt ggacttggca ggagtggact tagttgtctt
    45781 gggcggggaa aaagcagagc agctcagctt gcctgtccag aacaagctgg ctatggtgct
    45841 gagagagttg gccaataacc tgctcaaaca cagccaggct agtaagtgcc gtttgatatt
    45901 tgaaaaagaa cagcaagaat tggttgtata ttacgaagac aatggtgtgg gctttgccca
    45961 attgactggc caggaattac ataccataaa ggacaggttg gtgacggtga aaggaagttt
    46021 ggcgtttctt tctctagcca agcccacccg cctgtccatc cgaattccgt ttgaggaggt
    46081 ggtagaatga gaatattagt cgcagaagac caagcaatgc tgcgggacgc cctctgtcag
    46141 ctcttgggct ttcaagatgc ggttgaggct gttttacagg cagaaaacgg cagtcaggcc
    46201 attgctcttt tggaaaaaga gccagtagat gtggtgctct tagatataga aatgcctgaa
    46261 aagacgggcc tagatgtctt ggaatgggtg cgggggcaag ccttgcctgt caaggttgtc
    46321 atcatgacca ccttcaagcg accgggctat ttcgagcggg cggtcaaggc agatgtggat
    46381 gcttatgtgc tcaaggaacg atccatcgca gacctcatgc ggaccattga aacggtcttg
    46441 gcggggcgga aggaatattc accagagttg atggacattc tcctaaccca acgcagtccc
    46501 ttgacggacc aagaaagtca actgctcaag ctggtggcag agggtctgtc caataaggaa
    46561 attgccagcc agctccacct gtctgacggg acagtccgca actacatgac ctctatcctg
    46621 tccaaactgg gagcagaaaa ccgtaccgct gcggttaaga ttgcacagga aaagggttgg
    46681 ttagtataaa cgaatgagat tggggagaac ccaatctttt ttgatgaatg cagggaaaca
    46741 gcacttgagt ttatatattg aaaaactttg aatattttgc taaaattttc tatatgaaac
    46801 gactatacga tgtgcaacag ttgctaaaac agtttggtat tatcatctat atgggcaatc
    46861 gtctctatga catcgagatg atgcagatag agctcaatcg cgtttatcag gctggtcttc
    46921 tggataggat ggactacatg gaggccgaat tggttttgcg acgtgaacat cgtttggaat
    46981 tagagtatca gaaatcaagg gagaatgagt gatggaaaca ttttgggtat ttttagtatt
    47041 tttggcagta ttgggagcct ggatgggttt taattactgg agattgcgtc gtgcagcgac
    47101 tgtgattgat aatgcagaat ttgcagaaaa gatacacgga ggtcagttga tcgacctgcg
    47161 agacccgagt gagtttaatc gtaagcatat cttaggcgcg agaaatattc cttaccagca
    47221 attgcgccag tctacagctg ctttgcgtaa ggacagacct gtcttgatct atgagaatga
    47281 tcgtggtcaa ttggtaacgc ctgcagccct tcatctgaag aaacagggct ttaacgaaat
    47341 ctatatttta agctatggtc taaacggatg gaatggtaag gtaaaaacga ctaagtagca
    47401 ttgtcagtag gctagagtat tttcttatgc aataagacgg ataagggcaa aaatatggaa
    47461 aagaaatttg aaaagttgtc attggcagaa attggcatta tttcttttat gggacttatt
    47521 ttattgatta gcttaggcgc tagttggtat aaaaatgctc aaagcgaaac aagtgataca
    47581 aagacagtac agcaagtgcc caatcagaaa aaaacggttg atacattatt tcaggatgct
    47641 gagaatgctg tcattgtatt agaaggaaca catactgaag agaaacttgc agaggcacaa
    47701 tctgcagtaa acaaggttac ggatgcgact aaaaaagcag cattacagaa acggattgac
    47761 caagtaaaag agctagtggg acagcagata gatgctcaaa cacaggctaa gctaaaagcg
    47821 gagttggtca gggcggaagc agcccaaaaa gtagctgatg agaaaaaagt atcagaaaca
    47881 gggactagtc agtcaacgga ccttgctgaa gctagtgaga cctcacaaga atcctatgta
    47941 gtgcctaatc aaaatatata tggaaatcaa agtgtgagtt caacaagcca gtatacaagc
    48001 agcgtggcgt caactagtac aagtacttca gtccctccga ctagtgaagg agcacctgtg
    48061 gtagaaactc caacagtttc tgaagccccg gcggaaacga cggattcaac aactagcctg
    48121 gttgagtcag tggaaacagt tccaacagct gacgagagtt caccagataa tccgtagact
    48181 ttttagctac tggttcttta tggcgtatta acatactaga aaaatagcta tttgtatttc
    48241 aacatcaatt ttttcttgta acaatctagt tttaatacat acgataagag tgaggaattt
    48301 cgcgtaaaac agaatttcct tgctttttat ttttatcatt ttattgaata atgtgagaat
    48361 gatttcttgc tatagcggtt gagagcatat ttgataggag gatgaaaaag ttggtgcaaa
    48421 aaggaaagca gaacaaagtg cacttggttt cagcaacgag cttcattttt tgctataata
    48481 taccttatga gaattgtatc gggaagctat ggtggaagac cactgaaaac gttagatgga
    48541 aaaacaacca gaccgacatc ggataaggtc cgtggagcca tgtttaatat gattggtccc
    48601 tattttgagg gggggagagt tcttgacttg tacgccggca gtggtggttt atctatcgag
    48661 gctatatctc gtggcatgga gtcagcagtt ctggttgagc gagatcgacg agcacaagcc
    48721 attatccgtg aaaatattgc aatgactaag gaagcagata aatttcagct tttagcaatg
    48781 gaagctagac aggctttgaa cagtgtggaa gggcctttcg acctggtatt cttggaccct
    48841 ccttatgcag agcaggaaat tgaagatgtg ataacagaac tttgtcgccg tgacttacta
    48901 gcagatgatg ttatggtagt ctgcgaaacg gataaggcgg tctctcttcc ggaggaaata
    48961 gcagagctgg ggatatggaa agaaaaactc tacggaatta gtaaggtaac agtatatgtc
    49021 agataagatt ggattgttta cgggctcatt tgaccccatt accaatggac acttggactt
    49081 aattgaacga gcgagtggac tatttgataa attatatgtg ggagttttta ccaatcctaa
    49141 aaaggcagga ctcttgacgg gcttggagag aaaagccatt ttggagaagc tttttgtagg
    49201 aatggagaat atcgaggtcg ttctgtctga aaatgaattg gtagtcgatg tagctaggcg
    49261 ctatggagta acacatttgg tccgaggatt gcgtaatgcg accgatttgg aatacgagtc
    49321 aagttttgat ttttacaatc gtcagttggc gccagatttg gaaactattt atttaatcgc
    49381 caagccagag cttaagttcg tatcatccag ccaggttcga gaattgctat atttcaaaca
    49441 ggatataggc ccttatgttc cagaaattgt tagtgaggag attagaaaga atgaagaaaa
    49501 ataggaagtt aaccttaatt gcatctattg ttttaggaac tcttttgatt tggtttgccg
    49561 tttttgttcg tctgccttat tatttggaaa gtccaggtgg agctgccgat attcgtcagg
    49621 tactaacggt gaacaatcaa atagaccaag aggatggctc ttacaacttc acctatgtat
    49681 cagtccaaca agctacagct ttacaactat tcgctgctca gtttgatccc tatacgacag
    49741 ttcgttcctc tgaagagatg acaggagggg ccgacaatga agagtatttc cgtatagcac
    49801 agttttacat ggagacatcg caaaatatgg ccaagtacca aggtttgacc ttggcaggaa
    49861 aagaagtcaa tcttgatttc tttggtgtct atgtacttgc cttggcggat gattcgacct
    49921 ttaaaaaagt tcttaatatt gccgacactg ttgtgagtat caatggaaaa acatttgagt
    49981 cttctcctga tttgataaaa tatgtgagtg gcttggaact tggaagtgat gtgacagttg
    50041 gttatattag cgctggtcag gaaaaatctg cggacggtaa gattatcaaa ttgtctaatg
    50101 gaaaaaacgg gataggcatc actctcgtag atcatacaga ggttcaaagt tcgattccga
    50161 ttgagttcca aactggcaat atcggtggcc caagtgctgg tctcatgttt acccttgcta
    50221 tctatacgca actggctgat ccaaccttgc gtgatgggcg cgtgattgca ggaactggaa
    50281 ccattgagca agatggtagt gttggtgata ttggtggagc agataagaag gtcttgtctg
    50341 cagccaaggc tggagcaagt atcttctttg ttcccaataa tccagttgac gaagagatct
    50401 tgaaagagga tccaacagct aaaaccaact atgaagaggc taaagaagca gctgagaaag
    50461 caggtttgga cattgaagtt gtacctgtca agacggctca ggatgccatt gactatttga
    50521 agaagaccaa gggcgagtaa ttcgtccttt tttgctagag aataatatta taattgtcag
    50581 aaatttctcc taaatggtaa agtagaagaa tttccagata aatcgtgtta taatgataag
    50641 gttaagtgtg agaatttaga ttctgaccag atagattatt aatcaaatga tttttacgta
    50701 tgaagatttt ataagatagg aggacaaatg aaaaaagaaa tttcacctga aatgtataac
    50761 tataataaat accctggtcc gagttttgct cgtgtcggag ataaggttgt atctgaaaat
    50821 attgaattgg accttttgga agattacaag aatgcttttg accagacgat ttttggtcaa
    50881 cgtttttcac aactcatgct caagtttgat tatatcgtgg gagattgggg taatgagcag
    50941 ctgagattaa ggggattcta tacagacgat aaaaatgtta aatcagactt aaaaatcagc
    51001 cgcttggacg actatttgac ggagtattgt aattttggtt gtgcttattt cgtcttagcc
    51061 aatccgaatc cacaagactt gcctgctgag gaggaggata gaccgcgtcg gaagcggagt
    51121 cgttctcgca atcggaacag aaatcagcag cggacggagc ctattgcgcc aaaagaaaac
    51181 aaaagtaatc gcaatgaccg tcagaaaaaa gggaagcagc aaaacaaaca gtcggaacag
    51241 cgtcatttta ctatgaagaa tgctggtgtt aaggcgagtc acacggagcg ttctcaaaaa
    51301 cgtgagcgta agcagagcaa gcgtgagatg aatgaagtga agcgtaactt tgttatccgc
    51361 cagaaatagg gagaaatatg aaaccatcaa tttatgcatt tagtcaagcc aatctggttg
    51421 attggatttt agaaaacgga gagaagaagt tccgtgccac tcaaatttgg gaatggcttt
    51481 accgttctcg tgtccaatct tttgcggaaa tgaccaactt gccaaaatct ttgattgaaa
    51541 agttggaaga acattttgta gttaatccgc tcaaacaacg gattgtacag gagtctaagg
    51601 acggtactat caaatacctg tttgaattgc cagatggtat gttgattgag acagttctca
    51661 tgcaccagca ctatggcctt tcagtctgtg taacgacaca agttggctgt aatatcggct
    51721 gtacattctg tgcatctgga ttgattccta agcaacgtga cttgactagc ggtgagattg
    51781 tggctcagat tatgttggta caaaagtact tggatgagcg caatcagaat gagcgtgtta
    51841 gccatatcgt tgtgatggga attggtgagc cgcttgataa ctacgataat gttatgacct
    51901 tcttgcgagt ggttaatgac gacaagggct tggcaattgg tgcccgtcac atcactgttt
    51961 ctacgtcagg tttagcaccg aaaattcgtg agtttgcacg tgaaggtgtt caagttaact
    52021 tggcagtatc tctacatgcg ccaaataatg accttcgttc gagcattatg cgcattaacc
    52081 gcaaattccc tatagaagtt ctttttgaag caatcgaaga ctatatcaaa gtgaccaacc
    52141 gccgtgtgac ttttgagtat attatgctca atgaggtcaa tgatggagtg gaacaggcgc
    52201 aggaattagc tgacttaacc aagaacattc gtaaattgtc ttatatcaac ttgattcctt
    52261 ataacccagt tagtgaacat gaccagtaca gtcgttcaac caaggaacgg accttggcat
    52321 tctttgatgt tttgaagaaa aatggggtca actgtgtcgt tcgtcaggaa catggtacgg
    52381 atattgatgc tgcctgtggt caattgcgtt ccaatacgct caagaaagat cgtgaaaaag
    52441 cccgtgctcg tattgcagcc gcaaaagcaa aggcaggtat tcgagcatga gaaaattctt
    52501 ccaagcagat ggaaacttga ccaagctagg aagacagatt tgtaagacct tagctggagc
    52561 ctatgctctg gctattgttt tactttgttt tctaccacag acttggtacc cacagtataa
    52621 ggatttctcg accccaggaa ttattcaaat cggccgtctc tatcttttac caactccttt
    52681 caacagcatc gtcaacgggg acaaggtaga tagtttggcg gacctagggt ggattttctt
    52741 gcaaaacatc actaatattt ttctactttt ccctctgatt tttcttcttt tgtttcttag
    52801 ggaagaatgg cggagccttc gagcggtgat tcgttatacc ttttgcatga gcctgtttat
    52861 tgagtctacc cagttattac tagacctact gattgatgcg gggcgggtat ttgaagtgga
    52921 tgacctctgg acaaatacac ttggtggtgt tttggcttac ctactattta tccatattaa
    52981 aaaatggatc atcaagttta caggctagac aatgatgtaa tcaataactg gtttttagtt
    53041 attgaatgaa ttttcaaatt ttttagaaaa tttcaaaaaa acacttgacc ttttc
//
LOCUS       DASGAC010000002        42794 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.002, whole genome shotgun sequence.
ACCESSION   DASGAC010000002 DASGAC010000000
VERSION     DASGAC010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 42794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42794
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.002"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            188..259
                     /locus_tag="U1335_000062"
     tRNA            188..259
                     /locus_tag="U1335_000062"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:220..222,aa:Gln,seq:ttg)
     gene            383..1588
                     /gene="rpsA"
                     /locus_tag="U1335_000063"
     CDS             383..1588
                     /gene="rpsA"
                     /locus_tag="U1335_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002897515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEM5230590.1"
                     /translation="MNEFEDLLNSVSEVTPGDVVTAEVLTVDAGQANVAISGTGVEGV
                     LTLRELTNDRDADINDLVKVGETLELLVLRQVVGKDTDTVTYLVSKKRLEARKAWDKL
                     VGREEEVVTVKVTRAVKGGLAVEFEGLRGFIPASMIDSRFTRNTERFVGQEFDAKIKE
                     VDPAENRFILSRRDVVEAEATAARAEVFGKLAVGEVVTGKVARITSFGAFIDLGGVDG
                     LVHLTELSHERNVSPKSAVTVGEEVEVKVLAIDEVEGRVSLSLKATQPGPWDGVEQKL
                     AAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDALSVGQEVTVKVL
                     EVNAADERVSLSIKALEERPAAVEGEEKAEKRAPRPRRQKREEKRDYELPETQSGFSM
                     ADLFGDIEL"
     gene            1626..1697
                     /locus_tag="U1335_000064"
     tRNA            1626..1697
                     /locus_tag="U1335_000064"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1659..1661,aa:Arg,seq:ccg)
     gene            complement(1738..2829)
                     /locus_tag="U1335_000065"
     CDS             complement(1738..2829)
                     /locus_tag="U1335_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5230591.1"
                     /translation="MAYFRKRDNGWEYRISYKAPDGSYKQKSKSGYRTKVEAVQAASQ
                     AEIELSNGIVEDKDITLAEYFEKWMEVHKKPHVDPETYRKYEFNLKIIKEYYQNTKLS
                     KITATVHQEVLNRLADRYVRYTVKLFNSHIRSAIKIALHQGTLKKDFTQLAKIFSNVE
                     SKEESEKYLELDEYKDLLLDCRRSVKYQSHFFIYTIGKTGLRFSEALGLTTLTIDREN
                     MLLQVLRTYKVYGGKLGWNTTKNPQSVRDVPIDKEWLAAYDEYMDTGYIDNPEKRLFT
                     KVSSTAANKVLKKKTKPTFTIHGLRHTYVSFLIHSDLDVMTISKLVGHKDTTETLKTY
                     AHLFEEKQTQNFDKVRNLFEKFGANLGQT"
     gene            complement(3155..4051)
                     /locus_tag="U1335_000066"
     CDS             complement(3155..4051)
                     /locus_tag="U1335_000066"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230592.1"
                     /translation="MKEIVYLDTQMVNSVLAQLDQGLLLKNAVDTASTQTNSEEGGGV
                     TTTEGNGGINFGISGAVKVSKSDIDKFNIVYSTTNRELIETAMDDYSLDLLLEKLQEN
                     FAESIDVKEGSYIKITDTTHFYDFKQLSKSLNKEYLKIFLDEVFEQYEQLNREIKAIS
                     KASKAKNQNRLQEIEENLKNSPIKIMENLQGVSEYMTTLLDDSVLIRIGETLSLCDAK
                     NIRPTNALFGFMNLSKRKATIIGTVVAQEDGKNILEDIEKIDSANVIKYVSGNLMQVV
                     LTSFGVARIGDYYVRPMAIYFE"
     gene            complement(4119..4427)
                     /locus_tag="U1335_000067"
     CDS             complement(4119..4427)
                     /locus_tag="U1335_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001823580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230593.1"
                     /translation="MPQETYTKSEIDLKFDKISTDIQHSSEKSDLKFDALTKQVDLKF
                     DNFENKLENLFANLKVELANEKIESLEQARKDKRELILWSIGTAVAILGILIPLILNK
                     "
     gene            complement(4541..4963)
                     /locus_tag="U1335_000068"
     CDS             complement(4541..4963)
                     /locus_tag="U1335_000068"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230594.1"
                     /translation="MKKEFIEKIQDVKLYHSDDANTPLGVAYDISKFPVDFGVTFKVF
                     FFNLVPNKDYVIVLYYIAGNKPEELHLLNNVTLNVQSGDMIKYQDGYGLAFGTFSTIF
                     PIDQEGELMIVLELRALDNMERILDTYSTYITFEEKAK"
     gene            complement(5015..5770)
                     /locus_tag="U1335_000069"
     CDS             complement(5015..5770)
                     /locus_tag="U1335_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5230595.1"
                     /translation="MELNVYIGQKIKDFRKLAGMTQTDLAQRLETTKQTISRYEKGDR
                     KPGQDTLFELTDIFKVSIDDFFPPTTPTTAPNSLVEQISDKVVYLDQKLKEPRHSAWI
                     SHGERLLSEQEKENTVNELQATYHTYNYYDQPASAGTGQYLNDVKVETIELPIEVDAD
                     FVVPIYGDSMEPEYHSGDYIFVKLSVDLSDGDIGVFAYNGDAYIKQLRITDQGAYLHS
                     LNPDYDNIPITADTDFRTIGEVVDVYREKRPLW"
     gene            6128..6292
                     /locus_tag="U1335_000070"
     CDS             6128..6292
                     /locus_tag="U1335_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017650606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230596.1"
                     /translation="MSWKKILFGSYEKTFVSQDGRAKTTISIKGGLLLNLLALVGLVG
                     LIWWLIGLFT"
     gene            6309..6515
                     /locus_tag="U1335_000071"
     CDS             6309..6515
                     /locus_tag="U1335_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003074860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5230597.1"
                     /translation="MQTLLYGLRKERNLTQEEMADKIGISENAYRQKEKGQRPFTQDE
                     MFFLGKFFNKPIQEIFLPRKSPKR"
     gene            6697..7026
                     /locus_tag="U1335_000072"
     CDS             6697..7026
                     /locus_tag="U1335_000072"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230598.1"
                     /translation="MKELIDFANFRIYDDGNEIHLLAPNKEVFDKTPAHEHGISFEIF
                     DENGLLDYDKTVEKIEFHNKIRNRIKNDPRGQAGIVADVFGVDMGEAEEIRRNLIEIG
                     KKKHGLS"
     gene            7206..7448
                     /locus_tag="U1335_000073"
     CDS             7206..7448
                     /locus_tag="U1335_000073"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230599.1"
                     /translation="MPASGAVDGGLCAVGAGGEVERGVGRYSSAIYGKEKGMEKLAAI
                     GIVLLVVFAFNAPLFYYLLEDFGESDEERECDECGN"
     gene            7819..8040
                     /locus_tag="U1335_000074"
     CDS             7819..8040
                     /locus_tag="U1335_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HEM5230600.1"
                     /translation="MSKQRYGRPSTGQKGNNRPTVVISRESYDEVDSLSIGTGMSRSA
                     IIDYFISEGLKRARIEEVVIKTKRLVLED"
     gene            complement(8112..8633)
                     /locus_tag="U1335_000075"
     CDS             complement(8112..8633)
                     /locus_tag="U1335_000075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230601.1"
                     /translation="MAPQIETTPLWQTLDFWNFIIAVLALLAAFYSIWYTRQRDKTKL
                     EIVNTWYEKPDGNPYFVVFKIFNNSSTAVKITNLTLLHLDGKTVEIIKDYKYKPPYRI
                     NLLGSDYCRFDPFHESKVFDREEIIPANAETSFKYYLNSFSTDMKIKVTADRPIYRWS
                     KTKTFSVHFVKTD"
     gene            8722..8967
                     /locus_tag="U1335_000076"
     CDS             8722..8967
                     /locus_tag="U1335_000076"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230602.1"
                     /translation="MEEDKKANLEIVTRLAGKVIKATVSELPHEVSEQATVEKEEGML
                     HHYITKYTENNQRYAESWIQINIFGRCFCLWKKRIKI"
     gene            complement(8981..9148)
                     /locus_tag="U1335_000077"
     CDS             complement(8981..9148)
                     /locus_tag="U1335_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016251383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjzC family protein"
                     /protein_id="HEM5230603.1"
                     /translation="MSKNLIKPGTDNQPAGTYQEVGPRGGQVSGGRVVHIDKGDRLPP
                     TQEPGRNWVKQ"
     gene            9330..9530
                     /locus_tag="U1335_000078"
     CDS             9330..9530
                     /locus_tag="U1335_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011054585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5230604.1"
                     /translation="MWEKIEELANIRGMTIYALAKKAGINYTMLAELKSGKKKDMMFS
                     NVVKIADALDVSTEEFRKGFYE"
     gene            9523..10233
                     /locus_tag="U1335_000079"
     CDS             9523..10233
                     /locus_tag="U1335_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor KilAC domain-containing
                     protein"
                     /protein_id="HEM5230605.1"
                     /translation="MNELINVNVNDNQEPVVSGRQLHEALGVKTAYKDWFPRMTEYGF
                     VEGQDFCSNLSESTGGRRAVDHIIKLDMAKEIAMIQRTDRGKQVRQYFIQIEKDFNSP
                     EKIMARALLLADKKVHQLEAQIEADKPKVLFADAVSASHSSILVGDLAKLISQNGFKI
                     GANRLFAWLRENGYLIKCKGSDWNMPTQKSMELGLFEIKETTITHADGHISISKTVKV
                     TGKGQQYFINKFLADDVA"
     gene            10590..10847
                     /locus_tag="U1335_000080"
     CDS             10590..10847
                     /locus_tag="U1335_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230606.1"
                     /translation="MTEAIFTLGIFAVPMLAAAVAEQRKAEKRRMRKEFEEIRRRDYL
                     YGFKAGMGYQSTCDIEKARNGLKRDAQQVDKEWKRYAEMVG"
     gene            10828..11022
                     /locus_tag="U1335_000081"
     CDS             10828..11022
                     /locus_tag="U1335_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230607.1"
                     /translation="MQKWLVNFLKQEKPAIPRPLYTLEQENQILHDMVREIAEQRNEY
                     RIENQRLRDENAVLRRILER"
     gene            11197..11562
                     /locus_tag="U1335_000082"
     CDS             11197..11562
                     /locus_tag="U1335_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001163840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM5230608.1"
                     /translation="MQHIARNTDENYSKINNHPAQNSELSLQAKGLLFVLMSNKDTWR
                     PYIDQLSKRSKNGREAHRNAFEELKDSGYIRIYRKSLGRGRGIQNYPLVSDIPITDSY
                     WEYWKEKVDDELSTGESSE"
     gene            11823..12158
                     /locus_tag="U1335_000083"
     CDS             11823..12158
                     /locus_tag="U1335_000083"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230609.1"
                     /translation="MKQNNTFIVLRDKEGNFLAEYKNSKHVLAYSAGWSSDVEDALKI
                     PEEYYYGKDHEKYLAMAMLFDAEPIKVQAEYTLTTLDGQEPAEPVKDTDDTVGTFFEK
                     MLSDILGED"
     gene            12187..12327
                     /locus_tag="U1335_000084"
     CDS             12187..12327
                     /locus_tag="U1335_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230610.1"
                     /translation="MKLRERENLVWQRATAGEKEKLLDTGLADKAGYIRLVRELGRKY
                     VA"
     gene            12470..12655
                     /locus_tag="U1335_000085"
     CDS             12470..12655
                     /locus_tag="U1335_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000373551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230611.1"
                     /translation="MSYYREQYELSKEIARERLETCEVLGEIINEQQDLILALKRENE
                     RLKREKWNLKQTKRRKK"
     gene            12652..13563
                     /locus_tag="U1335_000086"
     CDS             12652..13563
                     /locus_tag="U1335_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecT"
                     /protein_id="HEM5230612.1"
                     /translation="MSNLAVIQKDITDAVNAKVSQMQNEGLVVAPNYAPANALKSAFF
                     AMTNSPSGNLLEKCSKESIANALLDMVVQGLSPAKTQCYFIPYGSTLKMTRSYFGTMK
                     VVKQLSNVKDIWAEVVFEGDVLKIRNDNGRKVLESHETDWTNQDNAIIGAYCIIEKVD
                     GERILTVMTKKEIDRSWQQSKNKSVQNAFPQEMAKRTVINRAAKQFFNTSDDSDILIE
                     AVNRTTENEFDDNRQIKEAEPVQSAGQDILDKMTGKTVAEEPAEDATISEAETVEEAG
                     VDISKMETTEQVIDAETGEILDEEEPF"
     gene            13563..14777
                     /locus_tag="U1335_000087"
     CDS             13563..14777
                     /locus_tag="U1335_000087"
                     /inference="COORDINATES: protein motif:HMM:NF018751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1351 domain-containing protein"
                     /protein_id="HEM5230613.1"
                     /translation="MSEELSLFDNLESMAPVPTATVLDFDFEFTPAQITIVGKDLLEQ
                     ALTGYVEKYKNYTVTAETFEDDAKVRAELNKLQKKVKSAVKEKLADYNKPIDEVKAWV
                     DGLLEPIVKIGKSIDEGVKAFEEQERLKRAKTIEELFQKAIASTGKDIDIRLFSKYFD
                     EFSKKTCFMADNVRPNKATVNMVASLIEEEVAKKDEYESALIKITEAAAKADFGPAPY
                     VRNFEQGASLADILQAIADDKALADKTREEVKRKQQLAKRIEEMTAIAESKGLDPKKY
                     ADMLESGTSALVVHEELVNDARKWQEEQDRMEQEFLAQHGAVCGNTQNRPNSDEIQRE
                     NMSEGKYTSEQKNASEDKIKLNKKVVKWQGDFRITFPDGETAKLFGGPGGLYEQHGIV
                     VEKLGEWVKIND"
     gene            14770..15606
                     /locus_tag="U1335_000088"
     CDS             14770..15606
                     /locus_tag="U1335_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease-like domain-containing
                     protein"
                     /protein_id="HEM5230614.1"
                     /translation="MTKLTEENYYKDRQWLSNSRFKAYMDCEAKAKAIDDKEWTDNRD
                     DTALLVGNYVHTYFESEEAHTKFVDANKTRMISSRGATKGELKKEFQVAQNMIDALKD
                     DEKFLGLYHGAPGDDVRKEMVLEGEIFGIKVKGKVDSINLTEGYFVDLKTMKTIRGLE
                     WSDVERKKIHGAAANILGFRYDVQLGLYQELLRQMGYPNFVPFVVAVSKEDVPDKMLV
                     DFPQYHLDEGLQFFENNVERVAGIIAGEIKPKGCGNCDYCRSKRTLDRVINLDDLIAG
                     IF"
     gene            15620..15895
                     /locus_tag="U1335_000089"
     CDS             15620..15895
                     /locus_tag="U1335_000089"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230615.1"
                     /translation="MTNFDEKMKQLKEESIAEFSLVAGTIEEARELIELVKSNGIKWF
                     SGEPIDHMSEYIYKKMQTYPEKRFVLNFRNGFNLKKQLTIFCTWEHR"
     gene            16025..16204
                     /locus_tag="U1335_000090"
     CDS             16025..16204
                     /locus_tag="U1335_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018165975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230616.1"
                     /translation="MVAHEKEYALYKGDKLLAIGTAKELAEQFGVKVSTIHFYKSPTY
                     TERTNEMKARRLVEV"
     gene            16194..16582
                     /locus_tag="U1335_000091"
                     /pseudo
     CDS             16194..16582
                     /locus_tag="U1335_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736099.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            16575..16913
                     /locus_tag="U1335_000092"
     CDS             16575..16913
                     /locus_tag="U1335_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016178314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HEM5230617.1"
                     /translation="MSNFEKLKDKVVRWAFERELHEADPKIQWMRVTEEVGEIRDVLL
                     KPTKFEDPKQALKDALGDSLVTLIVLSYQLRLDLVECLEIAYEEIKDRNGKMVNGTYV
                     KSEDLKGRGD"
     gene            16916..17125
                     /locus_tag="U1335_000093"
     CDS             16916..17125
                     /locus_tag="U1335_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230618.1"
                     /translation="MEWIDLVFFTPANKSDIIAKLDNDGYTYPRYNLKYKKVVPVIDV
                     LAIQRDCERVGIALADVYPRQITLF"
     gene            17136..17336
                     /locus_tag="U1335_000094"
     CDS             17136..17336
                     /locus_tag="U1335_000094"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230619.1"
                     /translation="MTVDEIITTCHKINAKPNIHLGEVQDVYESEDGQIRYYVNRKNG
                     VAYLYATQERGCFLSVVKNGQR"
     gene            complement(17389..17739)
                     /locus_tag="U1335_000095"
     CDS             complement(17389..17739)
                     /locus_tag="U1335_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HEM5230620.1"
                     /translation="MTMKDNYIPQKQDIIWIDFDPSLGKEIQKRRPALVVSSHKYSQM
                     TGFVAVCPITHGAKALESRGLSVPIHSDKVDGAVNPMQLYTFDFRARNASKITQLDTW
                     TFQKVVQLYNYIFD"
     gene            complement(17723..17938)
                     /locus_tag="U1335_000096"
     CDS             complement(17723..17938)
                     /locus_tag="U1335_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HEM5230621.1"
                     /translation="MNTVKTRKVGNSLAITIPKELNVDEGKEFIVYKGIDDVIVLAPK
                     IPNPFDNMEPFIMDNDFEGVVLLDNEG"
     gene            18137..18565
                     /locus_tag="U1335_000097"
     CDS             18137..18565
                     /locus_tag="U1335_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArpU family transcriptional regulator"
                     /protein_id="HEM5230622.1"
                     /translation="MTFFPEINTEKTKANAKRKLREYPRWRRVANDVDGQKVTASYTF
                     EPRQANGNPSRPVERLAINRIDAEAELEAIEYAVSHLFDPMHRKILHDRYLMAYPKSH
                     FEIREEIGYEKSQYYDMISSALLAFAELYRGSCLVVNLSE"
     gene            18739..19051
                     /locus_tag="U1335_000098"
                     /pseudo
     CDS             18739..19051
                     /locus_tag="U1335_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000599294.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            19133..20551
                     /gene="terL"
                     /locus_tag="U1335_000099"
     CDS             19133..20551
                     /gene="terL"
                     /locus_tag="U1335_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HEM5230623.1"
                     /translation="MDRAAIRQQARFELARRDFFYYCHLMASDFYKPSRRYLVELCND
                     LQGFLSDNEHNVLIINEPPRHGKSRTAGMFVQWLLGNDNNKKIMTGSYNETLSTVFSK
                     NVRNAIQETKADKDVVVFNDIFPDTHIKYGDAAMNLWSLEGGYNNYLATSPTGTATGF
                     GADIIIVDDLIKNAEEANNATVLEKHWEWFTNTMLSRLEEGGKIIIIMTRWHSQDLAG
                     KALVELPKSDYKVKHISMKAYDEATDTMLCDEVLSKQAYFQKTKTMGADIASANYQQE
                     PIDIKGRLYSGFKTYVDKPTFKRISAYTDTADTGKDYLASYIYGVTMDNEAYILDVVF
                     TKEPMEVTEPLLAQKLAEWQVNTCDIESNNGGRGFARNVERLTQDSYQNRYTVFNWFH
                     QSQNKQARILTNTTWAIEHIYFPENWRHRWSELYQNLMSYQREGKNAHDDAADALTGV
                     VEAINDKIRTKAKVKRKSLFGL"
     gene            20563..21567
                     /locus_tag="U1335_000100"
     CDS             20563..21567
                     /locus_tag="U1335_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001866505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEM5230624.1"
                     /translation="MEETLVYSRSLYDEQNLDKDIIYKLILKHEQTSSKLKKLKDYYL
                     GKHAIEKHTRRSNLPNFKTVANHAKDIADTATGYFMGNAIRYPKTDDMDIKDLLEAFD
                     NADVDSTDSDNALNMAIYGRAYEYIYVKEGENELVTRSLEPENTFIVYDDSIEQKPLF
                     AVYYYQTKDDVTEESYYRAQVVTENLQYSMSLREQKKESEEGVPHNLEGLPIIEYRNN
                     RYMVGDYEQQISLIDAYNSLMGNRVNDKEQAIESILVLYGAALADTPEEAREAMQILR
                     EEGLLELPKDANAEFLKNVLDEASVEVLRKSLKEDIYTFSHVPNLSDENFAGNTSGVK
                     "
     gene            21865..22332
                     /locus_tag="U1335_000101"
     CDS             21865..22332
                     /locus_tag="U1335_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001866506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEM5230625.1"
                     /translation="MEFKLLGLEMITKTKERYYIKSLHKRIQIFASYYNWSQIYENAK
                     AIIPQFSRGLPKNLLELSQIISNLKDKVSLRQLISLLPFVEDPDAEIEALEKEKETAQ
                     EEPAFSQNLPYEEDVTDGQSEVLGEAESSANGPGDGPGRANRKATRRNPQAGK"
     gene            22262..23731
                     /locus_tag="U1335_000102"
     CDS             22262..23731
                     /locus_tag="U1335_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HEM5230626.1"
                     /translation="MVQAMDQAEQTAKQLDEIHKLASRHITSKIDQIFESYRRDHGLT
                     EDEAKRVLANVKDLSDIRELKSALQNTTDSEEIRQLLILLDSAPYASRIEKYEALQRE
                     VDNLPTRLYKVENEASRTFYDEFIPDAYYHSIFDLQQQSGVAFAFNRIDPEEIRAIQQ
                     TPWLGANYSERIWGNTQALANELQKQLAVSLLTGRSAHETAEVINAQFGKGSYNSRRL
                     VRTEASHFHAEMEALAYEEAEVERYRLVAVLDLRTSSVCREHDGEVYLVSERVKGKNY
                     PPLHPWCRTVTIALDDDEWLAKATRSTRDPVTGKTIQVPADMTYKDWYEKYVKPKYKA
                     DNLDIWKIERANNQYEKYKSILGDKAPKSLEDYIDLKYNDKEGYERLKDRARWIKAKF
                     PSEKSFNGHFEKHGHEFPSLTKEEYQKLASELIASPIDENILGYETEGGRRVRYDKAE
                     NIIVIGQRNKNNQVRLNTMLKPDTGEEYYHENYLRDFPD"
     gene            23700..23900
                     /locus_tag="U1335_000103"
     CDS             23700..23900
                     /locus_tag="U1335_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230627.1"
                     /translation="MKTTYEIFLIDGEEYIHCPVCGRNVMLFDVCECNWENTGETNID
                     GGPNRMTLAEAKIAFAEGRPII"
     gene            24079..24324
                     /locus_tag="U1335_000104"
     CDS             24079..24324
                     /locus_tag="U1335_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001042279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230628.1"
                     /translation="MNKRIKKKRELIEQVQGTKEAVDIALNIIKSLLDENAKQANEIS
                     ELRSIVERNAQATNSRFDYLEKKVADKLSKKSWFSRK"
     gene            24332..24523
                     /locus_tag="U1335_000105"
     CDS             24332..24523
                     /locus_tag="U1335_000105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230629.1"
                     /translation="MEKQVIIFLKNGETLLFQGVNKIDLTDELIAFDYFGKSTNQEKG
                     GVFYFDNIAGWSVSADLLG"
     gene            24691..25236
                     /locus_tag="U1335_000106"
     CDS             24691..25236
                     /locus_tag="U1335_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001288018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4355 domain-containing protein"
                     /protein_id="HEM5230630.1"
                     /translation="MADLVENGVVDEVSQEEVETQEKAKTEATAEKTYTQAEVTEMIQ
                     QNVNRAVAKAHKDAEEQFQNKQDEAKKLAKMNAEDKQKYQLDKREQDLADREAAITRR
                     ELTAEAKTILSERGLPIELVDVVNLADADSVRDSIDAIQKTWEAAVLKGVADKTKGSA
                     PMKKAPQEQPTVEKWERDFLK"
     gene            25254..26270
                     /locus_tag="U1335_000107"
     CDS             25254..26270
                     /locus_tag="U1335_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding protein"
                     /protein_id="HEM5230631.1"
                     /translation="MPFENINTATSREKFLGIIEKVVAKKSYSAPLLLSNDAVEMNGR
                     SFTVTKSDTTELKDYKRNADNEFDHAQTEERTYTLDQEKYWGRFVDRLDERDSNGEVN
                     VNYVVARQAAEVVAPYLDHLRFDALLGNVSDNVAPASTKGANNSYQAVLDVSEKLDEL
                     DVVENRLLFVTPAFYKAIKSEIVNLPQGDTNQTVLYKGYVGQLDTFTVYKVPSKYLKG
                     VQAVATIGGVVVSPIQVDETKYNNNIPGRFGELVEQLLYTGAFVFDFDQKYIISIATS
                     KPEAKPSAQGKLNIRAEQWVSGSTYEAGARVQNGGKLFEATKKVTSSSTAPSSDSANW
                     KEIV"
     gene            26281..26469
                     /locus_tag="U1335_000108"
     CDS             26281..26469
                     /locus_tag="U1335_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230632.1"
                     /translation="MRFKVLKEFTDDELGFVHRVNDIIELTKERHEQMKKNAKLQDVN
                     LADYIEEIKTKGAEAPAK"
     gene            26479..26808
                     /locus_tag="U1335_000109"
     CDS             26479..26808
                     /locus_tag="U1335_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head-tail connector protein"
                     /protein_id="HEM5230633.1"
                     /translation="MLEDLKILTGESDYKILSSLLLRAKNIILTETNRSQLTPALECL
                     QLEVALELFNRQGSEGETSRSEGGVSVSYKDGLSDTILNGIRSHRLARVAGRAFEAKP
                     TEAVSDP"
     gene            26765..27088
                     /locus_tag="U1335_000110"
     CDS             26765..27088
                     /locus_tag="U1335_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230634.1"
                     /translation="MRLKRNRLKPYLIRKAVIVTSDEGIKKATYSDVAAEIRAEIWPA
                     SGRLQAEIYGQRLAYILNCLVDRETLIEENDGFCINSDKVTHKVISIKRYTNHQLLEL
                     EQCRD"
     gene            27076..27588
                     /locus_tag="U1335_000111"
     CDS             27076..27588
                     /locus_tag="U1335_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HEM5230635.1"
                     /translation="MSRLIGADKLIAKFRRLSGQQQTEIMAKAVHNTAKNVVQADAIL
                     RAPANNGDLRAGIKVRMSKSGNPRAEVVSTSDHGGFVEFGTGPKGAANHAGISPNVSV
                     SYRSTPWYVHESQIDVGPYRFQKIGEFYKMFGQVAQPYLYPALKDNEERVTKNINRFV
                     KRKLVEEVSK"
     gene            27585..27953
                     /locus_tag="U1335_000112"
     CDS             27585..27953
                     /locus_tag="U1335_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230636.1"
                     /translation="MINIKPIIYKKLKEVADNVTDTYPQDWENFPVIIYLEEENKPYD
                     ITDDTEQMSYLRYKVDIFHNDSTSELAVAIDAIFASLGLKRTSSVDTPDPTHLRHKVM
                     RFEGILDLNSRIVYQYRMEG"
     gene            27957..28373
                     /locus_tag="U1335_000113"
     CDS             27957..28373
                     /locus_tag="U1335_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM5230637.1"
                     /translation="MLANGIKLKMSETKGSGYTVIEGLKEVPELGIDPEKVENTTLAD
                     TIKQYEFGIGDAGELEYKFKYENSKTTSSYRTLRKLADAKAVRYFEQEYPDGTTVRFS
                     AQIAVKLGGGGVNSAIEFTLKLALQSDLEFTDPVVL"
     gene            28384..28758
                     /locus_tag="U1335_000114"
     CDS             28384..28758
                     /locus_tag="U1335_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230638.1"
                     /translation="MSTRKPYIVWTVKGTDYKLRLSTRQACEVEEKLGVNLLKIFMPK
                     PGEQFNLPPLKVMLLVVQGALQKFHHGIKLDDVYDLFDDYIDEGYGQTELMTDIIVPL
                     FEVSGFIPRNKEKEEPTLTVVE"
     gene            28785..29144
                     /locus_tag="U1335_000115"
     CDS             28785..29144
                     /locus_tag="U1335_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230639.1"
                     /translation="MISGFYPTALDAGIDPFSFWEYTLLELKELVESYNRQQFQKQKE
                     IASHHFIQSQMIARFVSLMFQEKGEAPDIWEFYPTLFEEDRAQIEQARIERDLKIHQE
                     QMRAYAERMKGRFTTSE"
     gene            29163..29723
                     /locus_tag="U1335_000116"
                     /pseudo
     CDS             29163..29723
                     /locus_tag="U1335_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936852.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            30019..32142
                     /locus_tag="U1335_000117"
                     /pseudo
     CDS             30019..32142
                     /locus_tag="U1335_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936852.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            32973..33323
                     /locus_tag="U1335_000118"
     CDS             32973..33323
                     /locus_tag="U1335_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016399159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230640.1"
                     /translation="MSRLIINGVTVVPPKSFQVAINDVDGETGRNANGDMVRDRITTK
                     RKLECEWGMLTQAEMALIQSAVQPVFLEVSYPDPILGQTSKTFYVGDRTAPAYSFTEK
                     FKPWSGLKFSLIER"
     gene            33325..34593
                     /locus_tag="U1335_000119"
                     /pseudo
     CDS             33325..34593
                     /locus_tag="U1335_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636662.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            34693..37461
                     /locus_tag="U1335_000120"
     CDS             34693..37461
                     /locus_tag="U1335_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000927610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="collagen-like protein"
                     /protein_id="HEM5230641.1"
                     /translation="MDKGVTTLLANKFYLGAPSENLIKLSPDYQTLTKASIDADGYYV
                     NESTDNLFWLSNYEPNPIKNGDEIKITGSIQSTKAQTLRVEVHFFDKDKTRVVVGGSV
                     SININSGGSLIDTSLVIPEVPLTAKYYAIAFVASNNTDIRAVCISSAQARIKTGVDMI
                     VDGSITTALLNAAEGDFARLVAKFVQAEGLTAKVADIQSAKIGSLTVDNDAWMRKLVA
                     NRIITELLQAFVVQADKIVVPGTTRPVFTIDRDGNISIDTPILKVRGELLATQKDLET
                     IALTPGPKGEKGDPGQRGADGLPGRDGVGIRSTVVTYGISSSDSVQPSTWSSNVPTLV
                     KGQYLWTRTVWTYTDNHTGTGYQKTYISRDGNNGRDGIAGKDGVGIRSTTITYGKSTS
                     GTIQPTSWTSQVPSVPNGQFLWTKTVWAYTDNTSETGYSVAKMGETGPTGAKGDRGAT
                     GPQGPQGPQGIQGLQGPQGLQGPKGDQGIAGPKGADGRTQYTHIAYADNATGGGFSQT
                     DQTKAYIGMYQDFTATNSTNPSSYRWTKWKGSDGAQGVPGPKGTDGRTPYIHWAYSDS
                     ADGTGLTTSDNGQRYIGHYSDYTQADSTDKTKYRWADRWAKIEVGARNYFRGYKNNEE
                     IALPAYSNVGSFIQFYNKLTHPLPEANGKTFTISFEAISPNGDTVLHVYNANGGPQYF
                     YFSAGTIGTATNAWKKFKVTVKPITQATYTSSTNSNRIEIYAPSKTGVKVRNIKVELG
                     TVATDWSPAPEDVDENINSKADQALTQEQLNALNERANLLKTELDAKVAIDAVNELIG
                     EYRRMLDVESANVRENQEALVEAAKRVAAIELNLGQFAERVEFLDSYMTRSNEGLIIG
                     KNDGSALIRVSENRISMLSAGKEVMYISQGVIHIDNGIFTKSLQIGRFRTEQHVVNLD
                     MNVIRYIG"
     gene            37470..39656
                     /locus_tag="U1335_000121"
     CDS             37470..39656
                     /locus_tag="U1335_000121"
                     /inference="COORDINATES: protein motif:HMM:NF017688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230642.1"
                     /translation="MALETRGIKQIYRDSKTGQESTGDSGHRFYIYDNAKKEYIAEIG
                     SYIKAMGLKVVDNKPKSTGYGIFFYVRMLKAVDLRSGGEAFFEISLGSKGVKKKIPLT
                     KKLYPVSRDTYSGSYGTTYGIFRDEAEGGVDNPRYEELGFVYIEEPNVYAYTGSGYKH
                     FEITTNFFDRSQRAITIRFEEGTHHVRDYDANVYVQSFASPIGSSNTLNLVKPSQNYS
                     EDKYSLSYYWYGKRGILATKSTATSFEFTLPNHFWDDIPESFDGTGYIILDRWTVVGG
                     RDSIFSTLFIPFRGEVPAHVKPSIQSITLTDTNTKVSALLENQAFAQILSNISINVSA
                     NGIYGSTIKSIRSEIVGKNQVVTSTGGSFGVMNYHGQITIRTTVTDSRNRVSDSVDRV
                     VTVLPYHPPALSFTVSRGGSLRNQLIVSRSVKIAPLTWNGRQNNRLKLNFSTAALGGS
                     FTPNNSSANIDATTIAELINSQATLAGTYSSLSSFEVLGVLSDSFVNDVTFKVSVPTE
                     SVVVSYDKHGVGINKVRERGAVDVKGDIYANDKPIQQHKLTENNGVAIIATGDWNNYK
                     ETGLYRGSNLANQPPTAVGAHNWKYVRVTKHDAGWSLQEAIDFNGVMSCFRVWANNAW
                     KPWQRVALVQPSTWISTGVNGVHYKQEGAVVALRIKVSSTSFVSNYSLGTIPTSLLPV
                     AGTDAVFRVVTNNGTDRIVRIKSTGICQIESYLLNESLTTTITWLI"
     gene            39668..40093
                     /locus_tag="U1335_000122"
     CDS             39668..40093
                     /locus_tag="U1335_000122"
                     /inference="COORDINATES: protein motif:HMM:NF018771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1366 domain-containing protein"
                     /protein_id="HEM5230643.1"
                     /translation="MDFLFLQKSLEYHSDGSPKQTKLILTDEVGSQFICHLPADAINK
                     SNDELVQEGADDIYNRFFPKRAENERFTSIEDWLRSAETERNERFVKLEADMQDKIDD
                     AVAELTIMFTGFAGQFGAEAVEDVPKDTTPHDVEVEIEE"
     gene            40097..40309
                     /locus_tag="U1335_000123"
     CDS             40097..40309
                     /locus_tag="U1335_000123"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230644.1"
                     /translation="MGFINTILTGISLIKKGQFTMKFTKKHVVAQAWYRRVAGGIATF
                     EEVPKLWNLREVVKEMLDELAPEDGK"
     gene            40313..40738
                     /locus_tag="U1335_000124"
     CDS             40313..40738
                     /locus_tag="U1335_000124"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230645.1"
                     /translation="MPDNILNIIGAVAPTIGVIATGGFGYLAARSNNLNKTQFGELKQ
                     GMEDIDGRLTTLQNVADDNQSNLKAVKSDVDNLKNSSRSSRRYTLYKDLDTAIERGWT
                     TLEERREIAKLFDSYKILGGNGEIETMYQIYIQLPMKEG"
     gene            40743..40997
                     /locus_tag="U1335_000125"
     CDS             40743..40997
                     /locus_tag="U1335_000125"
                     /inference="COORDINATES: protein motif:HMM:NF016419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin"
                     /protein_id="HEM5230646.1"
                     /translation="MHKINWGVRLRNKTFWWTLVPLVVLLAQQLGFNWVPKDWESTFA
                     TIMSILTVVGIINDPTTNGIADSEQALRYYEPKVDRHGKA"
     gene            41084..41770
                     /locus_tag="U1335_000126"
     CDS             41084..41770
                     /locus_tag="U1335_000126"
                     /inference="COORDINATES: protein motif:HMM:NF017102.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006739501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HEM5230647.1"
                     /translation="MTTANEAVMFVTDLANRGAGVNYDGAYGMQCVDLPNWICGKFFG
                     KPLWGNAIDLLDSAEQVGFEVHRLPTSARPRPGAVFVKDYVAGDGVNYGHTGIVIGVD
                     GDIAQTVEQNLAGNLYVGSPAQYASQRISQLVGWFYPPYEAEVEQPEEKKVEEQDMFT
                     ISAPGRGIALVAGGTFYALLDAKDPVAFWDKGVPHMQISQATFDNFQHKSNLDRLDDE
                     TVNKLIKGLK"
     gene            41831..42208
                     /locus_tag="U1335_000127"
     CDS             41831..42208
                     /locus_tag="U1335_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230648.1"
                     /translation="MKYNVKISQKIKEIVGLETSATDILIHEENLEKHMLKSRHRKMI
                     KYIPDVADILNVPDYIGQNKNVESESFEVIKVLADNVLVAVKLDKKNDYFFVASVYDI
                     TDSKLNHMKRNGRIKAFDKIEDK"
     gene            42552..42737
                     /locus_tag="U1335_000128"
     CDS             42552..42737
                     /locus_tag="U1335_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000139836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HEM5230649.1"
                     /translation="MTERELKKIAKKQGFSKTDFGKGSHEVWKHPDGRTVTIPKPKEK
                     DYRPGTLSNILKVLYGE"
BASE COUNT        13358 a         7706 c         9995 g        11735 t
ORIGIN      
        1 ctgtaaatcc gctccttcgg gttcgggggt tcgaatccct ctctctccat atctaagata
       61 ctaagggcgt caaacgcaca gtaaaaatag gaagttgaca gcaaatcttg atttgccagg
      121 caacttatct tttttacaca gcgtttagcc cgagttcatt tcagaacgtt atcttagtgg
      181 tgtatattgg ggtatcgcca agcggtaagg caagggactt tgactccctc atgcgttggt
      241 tcgaatccag ctaccccagt aaaggtacta gatatagtct agttcgtcaa agatgtctaa
      301 ttgttgttgt ccttgcgtgt gccttaaata aaatatattt tatgttgggt cgaaagacct
      361 gattgtcgga ggttttttta taatgaacga atttgaagat ttgttgaaca gtgtaagcga
      421 agttacacct ggcgatgtgg taactgcaga agtattgaca gttgatgctg gtcaagcaaa
      481 cgtagctatc tcaggtactg gtgttgaagg cgtattgact cttcgtgagt tgactaacga
      541 ccgtgatgct gatatcaacg accttgtaaa agttggtgaa acacttgaat tgttagtact
      601 tcgccaagtt gttggtaaag atacagacac tgttacttat cttgtatcta aaaaacgttt
      661 ggaagcacgt aaagcatggg acaagcttgt tggtcgtgaa gaagaagttg ttacagttaa
      721 agtaactcgt gccgttaaag gtggtcttgc agttgaattt gaaggtcttc gtggtttcat
      781 cccagcttca atgatcgaca gccgtttcac tcgtaacact gagcgttttg taggtcaaga
      841 atttgatgct aaaatcaaag aagttgatcc tgctgagaac cgtttcatct tgtcacgtcg
      901 tgacgttgtt gaagcagaag ctacagctgc acgtgctgaa gtattcggta aattggcagt
      961 tggtgaagtt gtgactggta aagttgcacg tatcacaagc ttcggtgctt tcatcgacct
     1021 tggtggtgta gatggtttgg tacatttgac tgaattgtct cacgagcgta acgtatctcc
     1081 taaatcagct gtaacagttg gtgaagaagt tgaagttaaa gttcttgcaa tcgacgaagt
     1141 tgaaggtcgc gtatcattgt cattgaaagc tacacagcct ggtccatggg atggcgttga
     1201 gcaaaaattg gcagctggcg acgtcatcga aggtaaagta aaacgcttga ctgacttcgg
     1261 tgctttcgtt gaagtattgc caggtatcga tggtttggta catatctcac aaatttcaca
     1321 caaacgtgtt gaaaatccaa aagacgcttt gtcagtaggt caagaagtaa ctgttaaagt
     1381 tcttgaagta aacgcagctg atgagcgtgt atcactttct atcaaagctt tggaagagcg
     1441 tccagcagca gttgaaggtg aagaaaaagc tgaaaaacgt gctccacgtc cacgtcgtca
     1501 aaaacgtgaa gaaaaacgtg attacgaatt gccagaaaca caatctggtt tctcaatggc
     1561 tgaccttttc ggtgacattg aattgtaatt catataaaaa cttgccttgt gcaagttttt
     1621 cctttccacc cttagtgtaa tggatatcac gtaagattcc ggttcttgag atgggggttc
     1681 gattccctca gggtggataa aaatatgctt aaaacccttg atagacaagg gtttttgtta
     1741 tgtctgcccc aaattcgccc caaatttttc aaaaagattt ctaactttat caaaattttg
     1801 ggtttgtttt tcttcaaaaa ggtgggcgta tgtttttaat gtttctgtcg tatctttgtg
     1861 accaactaat ttcgatattg tcataacatc caaatcactg tgtatcaaaa aactaacgta
     1921 ggtatgcctt aatccgtgga ttgtgaaagt tggttttgtt ttctttttta agactttatt
     1981 agcagcagta cttgacacct tggtaaataa tcgcttttca ggattatcta tataccctgt
     2041 atccatgtat tcatcgtaag ctgctagcca ttctttgtca atcggaacat ctcgtacaga
     2101 ttgaggattt ttggtcgtat tccaacctag ttttccgccg tatactttgt aagtccgaag
     2161 gacttgcaat agcatattct ccctatcaat cgttaatgtt gtcagcccta gggcttccga
     2221 aaatcgtaga ccggttttcc ctattgtgta tataaaaaag tgactttggt atttaacgga
     2281 ccgcctacag tctagtaaga ggtctttgta ttcgtcgagc tctaagtatt tttcgctttc
     2341 ctctttggat tcgacgttag aaaaaatttt agctaattga gtaaaatctt tttttaatgt
     2401 cccttgatgc aaggcgattt tgattgctga tctaatatgg gaattaaaca gttttaccgt
     2461 gtatctgaca tatctatctg ccagtctatt gaggacttcc tggtgcacgg ttgccgtgat
     2521 tttggatagc ttagtatttt ggtaatactc ttttatgatt tttaagttaa actcatattt
     2581 ccgataggtt tctgggtcga cgtgtggctt cttatggacc tccatccatt tttcaaagta
     2641 ttccgcaagg gtaatatcct tatcttccac aatgccgttg gacagctcaa tttcagcctg
     2701 tgaggcagcc tgaacagcct ctaccttagt tctatatcca gacttagatt tctgcttata
     2761 tgagccatca ggagctttat acgagatacg atattcccaa ccgttatccc tttttctaaa
     2821 gtatgccatt gtttttcacc tcactttttg ataaaatggg tatagtaaag agacctactg
     2881 cgaagcaggt tttactatac ggaattaccc tacactcaag gtttcgcgac ggagagtgtg
     2941 gggatttttt attttcttct aaagtatgct ataatgtaat caaaaatagc aggtaggtga
     3001 ttgatatgtt gaaattactt aaaaaattga atgctgattg tactcgtcaa agcgaagtag
     3061 ttaaagacat aaaacagatt tgtaaccagt cttttctgga aaataaaaac agttttaaag
     3121 aatcatccca gagagtcaag gggataatgg cacgttattc aaaataaatc gccatcggtc
     3181 taacataata gtctcctatt ctagcaactc caaaactggt taatacgacc tgcatcaaat
     3241 taccagagac atacttaatg acatttgcac tatctatttt ttcgatgtcc tctaatatat
     3301 tttttccatc ttcttgtgcc actactgttc ctatgatagt ggcttttctt ttggataagt
     3361 tcatgaagcc aaacaaagca tttgtagggc gtatgttttt agcatcacat aagctgaggg
     3421 tttctccaat tctgattaga acagaatcat caagcagggt agtcatatat tctgatactc
     3481 cctgaagatt ttccataatc tttataggcg aattttttaa attttcttca atctcctgta
     3541 atcggttttg attttttgcc ttgctagctt tgctaatagc ttttatttct ctatttaatt
     3601 gttcatactg ttcaaatacc tcgtccaaga atatttttag atactctttg tttaaagatt
     3661 ttgaaagctg tttaaaatcg tagaaatggg tcgtatctgt tatttttata taactacctt
     3721 cttttacatc tatactttcc gcaaagtttt cttgcaattt ttccagtaat aaatcaagag
     3781 agtagtcatc catagctgtt tcaatcaatt cccgattggt agtagagtat actatattga
     3841 atttatcaat atcggattta cttactttca ctgctccaga gataccaaaa ttaataccac
     3901 cattaccttc tgttgtagta actcccccgc cttcttcaga attagtctga gtactggctg
     3961 tatcaactgc attttttaaa agtaatcctt ggtctaattg ggccaaaaca gaatttacca
     4021 tttgggtatc taagtaaacg atttctttca tgtagttctc tcctatcctc tataaatatc
     4081 cacgacctcg ccgatggtaa ggagtgtgtg gggatttttt atttgttcaa aattaaagga
     4141 atgagtattc ctaaaatagc aactgctgtt cctatagacc ataaaataag ctctcgctta
     4201 tctttacgag cttgttctag agattctatt ttttcattgg ctaactcaac tttaagatta
     4261 gcaaataaat tctctaactt attttcaaaa ttatcaaatt ttaaatctac ttgtttggtc
     4321 aatgcatcaa attttaaatc cgatttttcc gagctatgct gaatatcagt gctgatttta
     4381 tcgaacttca aatcaatttc agattttgtg tatgtttctt gcggcataat agaatcctcc
     4441 tgttgttttc ttgattctat tatatcatgt gtagtctgta ctggtacaga taagttgttc
     4501 ggattggtta ttttcattgg gattactttt tcgagtgtca ttatttcgct ttctcctcga
     4561 acgtgatgta tgtactatag gtatccaaga ttctttccat attgtctaaa gctcgtaatt
     4621 caagaactat cattaactct ccttcctgat cgattggaaa gattgttgag aaggttccga
     4681 atgcaagccc atagccgtct tggtatttta tcatgtcgcc ggactggacg ttgagagtga
     4741 cattgttcag caggtgcaat tcttcaggtt tgttgccagc aatgtaatat agtacaatca
     4801 cgtagtcttt attgggtacg aggttaaaaa agaatacttt aaaagttacc ccaaaatcta
     4861 ctggaaattt tgatatatcg taagcgacac caagcggtgt attagcatca tcgctatgat
     4921 acagtttcac atcttgaatt ttttcaataa attctttctt catgacattt ttattccttg
     4981 cgttattgtc aaatcaaatt attaaactcc tcaatcacca caggggtcgt ttctccctat
     5041 aaacatctac gacttctcca atagttcgga agtcggtgtc tgctgtgatt gggatgttgt
     5101 catagtctgg gttcaggctg tgaagatagg cgccttggtc tgtgatgcgg agttgtttga
     5161 tataggcgtc gccgttatag gcaaacactc cgatgtcgcc gtctgataaa tctacagaca
     5221 gtttgacgaa tatataatcg cctgagtggt attctggctc catggaatct ccgtagatag
     5281 ggacaacgaa gtcggcatcc acttcaatag gtaattcgat agtttcgact ttcacatcat
     5341 tcagatactg acctgtgcca gcggaagcgg gttggtcgta gtagttgtag gtgtggtagg
     5401 tggcttgcag ttcgtttact gtattttctt tttcctgttc gcttaacaaa cgttctccgt
     5461 ggcttatcca tgcgctgtga cgtggctcct taagcttttg gtctaaatat accaccttgt
     5521 ccgaaatctg ctctacgagg ctgttagggg ctgtggtggg ggtggtaggc ggaaagaagt
     5581 catcaatact tactttaaaa atatccgtca gttcaaataa agtatcctga cctggttttc
     5641 tgtcaccttt ttcataccta cttattgttt gctttgttgt ttctaaacgt tgagcaaggt
     5701 cggtctgtgt catacctgcc aattttctga agtctttaat tttttgaccg atatatacat
     5761 ttaattccat aatgtttttt cctttactct tttgttatta aatgtagtat aacaaaaaaa
     5821 tcaccgaaaa ggaaacattt ttgtgttttt cgcaaaaaaa gtgttgacaa gtcaccgaac
     5881 tggtgatata ataaagtcaa ggttaaggaa ttagcctaat aacacaggag gtacagccaa
     5941 tggcaagaca cgaaaaaaag cctaaacgca gagaaatcga atttgacatt caattcttct
     6001 ggtttagact tcgagtaaaa tacttaatcg agtggtagct tgattaagta ggggcgaaag
     6061 cccctccctc gtaagaggga taggtatagt gtaccacatt ggctgtactt cctgcaagga
     6121 gtatcttatg agttggaaaa aaattctctt tggtagttat gaaaagacct ttgtcagtca
     6181 ggatggcagg gcaaagacga ctatctctat caagggtgga ttgttgctta atctgttggc
     6241 actggtcggg ctggttggct tgatttggtg gctgattggt ctatttacat agaaaggagt
     6301 gatgattatt gcaaacattg ttgtatggtt tgcgtaaaga aagaaattta acgcaagaag
     6361 aaatggctga caaaattggt atttctgaaa atgcgtatcg tcagaaagaa aaagggcaac
     6421 gaccttttac acaagacgaa atgtttttct tgggtaagtt ttttaacaaa cctattcaag
     6481 aaattttttt accaagaaag tcaccaaaac ggtaacaaac acaccagctc tgctatttag
     6541 cattgcacac tatcagttct tgattgtcac ctagtacggt gtccaacgca gctccttttc
     6601 cgctttctga gtttttattg cgttggcggt ttcgttcatt gactggtcat caccgtgcta
     6661 gctgtcagtc aaggactgaa aagaaaggaa aaaattatga aagaacttat tgattttgcg
     6721 aattttcgca tttatgatga cggcaatgaa attcatctac ttgctccaaa taaggaggta
     6781 tttgataaaa ctcctgccca tgaacacggt atcagttttg agatttttga tgagaatggt
     6841 ctgctggact acgacaagac tgttgaaaag attgaatttc acaataagat acgcaacagg
     6901 ataaagaatg accctcgtgg acaggctgga attgttgctg atgttttcgg tgttgatatg
     6961 ggagaagcgg aagaaattcg acgcaacctt atcgaaatag gcaaaaagaa acacggtttg
     7021 tcttaacaaa cacaccagct ctgctatttc cccaatggtc agtctttggt caaactttat
     7081 acaatacttg tataaaaagt tcttgacttc ttcaagaact ttaactaaca ggtggaagga
     7141 ggggtgacca tgacgtctat acatgtgtct ttgtcggttg agatgaagaa gcggttgggg
     7201 gtggagtgcc agcgtctggg gctgtcgatg gcggcttatg tgcggttggt gctggcggag
     7261 aagttgagag aggagtaggg cggtacagct ctgctattta cggaaaggag aaggggatgg
     7321 aaaaactagc agctatcgga attgtcttac ttgtcgtttt cgcgtttaat gctccgcttt
     7381 tttactatct tcttgaggat tttggggaaa gtgatgaaga gcgggaatgc gatgaatgtg
     7441 gaaattaaac tgaattgttc ttctgtcagg acactcagca atccaatccc taacaacaca
     7501 gtaaagagaa tatagacaat atcaaaatga atatcgtcat catttttgag gatatatttc
     7561 aggaagtcga cgatgaaaaa ggcggacact cctgataggg aaaatgatac gaacatgaca
     7621 aaaagcactt ttgttccatc aatgcttttc agggtattaa tagctgggtt ttcaacttgg
     7681 ggtacagaaa gatacaagaa tgagaagaaa ataatcaatc cgatgctcga aatattttcg
     7741 accgtaaata ggtatttaat taattttttc ataaagatat tataccagat tttgcaacca
     7801 aactaggaag gaaataacat gtcaaaacaa agatacggtc gcccaagtac agggcagaaa
     7861 gggaataacc gtcccacagt ggtcattagt cgtgagagct acgacgaggt agacagctta
     7921 tcaattggta caggaatgag ccgtagtgct attattgatt attttatcag tgaaggcttg
     7981 aaacgtgctc gtattgaaga agttgtcatc aagactaagc gtctagttct tgaggactag
     8041 aaaggagaac aaaaatgcaa ctagcaacat ttattttact aattgcacat atgattatga
     8101 atattacaat tttaatccgt cttaacaaaa tggactgaaa atgttttcgt ttttgaccat
     8161 ctataaattg gacggtcagc ggtgactttg attttcatat ctgtagaaaa cgaattaagg
     8221 tagtacttga aagaagtttc tgcatttgct gggatgattt cttctcggtc gaacactttg
     8281 gactcgtgaa aagggtcaaa acgacaataa tctgagccaa gcaggttaat tctgtagggt
     8341 ggtttgtact tgtaatcctt gataatttcg acagttttac catcgaggtg cagcaaggtc
     8401 aggttggtta tcttcacagc tgttgaagaa ttattgaaaa tcttgaacac aacaaaatag
     8461 ggattcccat ctggtttttc ataccaagta ttcacaattt caagttttgt cttatctcgt
     8521 tgtctggtgt accagatgct ataaaaggca gctagaagtg ctagaacagc aatgataaaa
     8581 ttccagaaat caagtgtttg ccagagtgga gtcgtttcaa tttgcggcgc catgatttta
     8641 cctcacgttt ttgtttttat tataccaaaa aaataggtaa caaacttacc agctctgcta
     8701 tttaacagaa aggagaaggg gatggaagaa gataaaaaag ctaaccttga aattgttaca
     8761 aggctagctg gaaaggttat taaggcaact gtttctgaat tacctcatga agtttctgag
     8821 caagcaacgg ttgaaaagga ggaggggatg ttacatcact atatcacaaa gtacacagag
     8881 aacaatcagc gatatgctga aagctggata caaatcaata ttttcggcag gtgtttctgt
     8941 ctatggaaaa agcgtatcaa aatttgacac gctctataga ttattgcttg acccagtttc
     9001 gaccaggttc ttgagtaggt ggcaagcgat cacctttgtc gatatgcacc acacgaccgc
     9061 cagagacttg tccgccacga ggaccaactt cttgatatgt cccagctggt tgattgtcag
     9121 ttcctggttt gattaggttt ttgctcatat cgtttctcct ttccttatat ttgacgtaca
     9181 ggagaaaatc actagatttg gtagttaaag ttggatttat ttccctgatt gtcatgagtt
     9241 gataataaca caaatatata gaaaggtcta tatataggaa aaatatcagt ctaaagacgg
     9301 atttagctct atatatagtg gttttgaaga tgtgggagaa aatcgaagaa ctcgctaata
     9361 ttcgaggaat gactatctac gctttagcaa agaaagcagg tatcaattat acgatgttgg
     9421 cagaactaaa atctgggaag aagaaggata tgatgtttag taatgttgtt aaaattgctg
     9481 atgctctgga tgtcagcact gaggagttta gaaaggggtt ttatgaatga acttattaac
     9541 gttaatgtga atgacaatca agagcctgtg gtgtctggtc ggcagttgca tgaggctttg
     9601 ggtgtcaaga cggcatataa ggactggttc cctagaatga ccgaatatgg atttgtcgaa
     9661 ggacaggact tctgctcaaa tttgagcgaa agtacgggag gtcgtcgagc ggttgaccat
     9721 attatcaagc tggatatggc caaggaaatt gctatgatcc aacggacaga ccgtggcaag
     9781 caggttcgtc agtatttcat ccaaatagaa aaggacttca acagtccaga gaagattatg
     9841 gcgcgggctc tgctattggc agacaaaaag gtccatcagc tggaagcgca gattgaagca
     9901 gacaagccca aagtgttgtt tgcagacgct gtgagtgcta gtcactcatc tatcttggtt
     9961 ggtgatttag caaaactaat cagtcaaaac ggatttaaaa tcggtgcaaa tcgcttgttt
    10021 gcgtggttgc gtgagaatgg ctatctgatt aagtgcaagg gcagtgattg gaatatgcca
    10081 acgcagaagt ctatggaact aggtctgttt gaaatcaaag agacgactat cacacatgca
    10141 gacggtcata tctcgattag taaaactgta aaagttactg gcaaaggtca gcagtatttt
    10201 atcaataaat ttttggctga tgatgttgct tgaaaaaaca aaaaaaccac tgcgggaaca
    10261 gtggcttact aaaaaattac acttaaatta taacacacga aagcgaggtt tgacaagatg
    10321 gatgacattg ctgaaagcct catatcacga tttatcagtc aactaaaagt cagactggta
    10381 gaagtgtttg aggtgtttaa catagaactt gcgctgcctt tgctactcaa cagcaagcag
    10441 tgcaagaagt tgttgggtat tgcaaatgag acggaattcc aaagggtgtc acatctgaag
    10501 gatttcccaa gaattgataa gaaagggtcg cacccacgtt tcccacggga tgccgtggtt
    10561 gagtggatgc gtgtgaattg gaagttgata tgacagaagc gatatttaca ttaggaatct
    10621 tcgcagtgcc gatgcttgcg gcagcagttg cggaacagag aaaagctgaa aaaagacgaa
    10681 tgcgcaaaga gtttgaagaa attcgccgca gagattacct gtacggcttt aaagcaggta
    10741 tggggtatca gagtacctgt gacattgaaa aagctcgtaa cgggctaaag agagacgctc
    10801 agcaggtgga taaggagtgg aaaagatatg cagaaatggt tggttaattt tttaaaacaa
    10861 gaaaaacctg ctattccacg tccgctttac acactagaac aggaaaatca aatattgcat
    10921 gacatggtcc gcgaaatcgc tgaacaacga aatgaatacc gtatcgaaaa tcagcggcta
    10981 agggatgaga atgctgtgtt gaggaggatt ttagaaagat gacaagtctg gttagattgg
    11041 aattaatcgc tcaatcgtat gaccgatttc ttcggacagg cgacattgaa catcttgagg
    11101 atgtagaaag gattttggaa tatgacgaac atgacagcga ttgataacac gtttcagcga
    11161 ggaattgttg gagtttagga ggaatggtta tggcttatgc agcatattgc aagaaataca
    11221 gacgaaaact actctaaaat aaataatcac cctgctcaaa acagcgaact tagtttacaa
    11281 gctaaagggt tactatttgt gttgatgtcg aacaaagata cttggcgacc gtacatcgat
    11341 caactttcca aacgctcaaa gaacggtcga gaagctcata gaaatgcctt tgaagaacta
    11401 aaagacagcg gctatatacg tatctacaga aaaagtctag ggagaggaag aggaattcag
    11461 aactacccct tagtttccga catccctatc acagatagct attgggagta ctggaaagaa
    11521 aaggttgatg atgagttatc cacaggtgaa tcatcagagt gaatttacaa cttacgggtt
    11581 ttacaaagtt gtatttttca aaagttgaat tttacaaagt tgtatttttc aaaagttgaa
    11641 aaacccgaca ctaataataa ctaaataaaa ataataacta acttaataat aatctagggg
    11701 ctatcgccca ctaataaaca ataagaggct aaagcctcta accaacttaa aaacaaacta
    11761 atcgttatat ataaataata tatataggga tttacagaag ttatccacag gaggaaaaaa
    11821 atatgaaaca aaataacaca tttatcgtat tacgagataa agaagggaac ttcttagctg
    11881 agtacaaaaa cagcaaacac gttttagcat attcggcagg ctggtcaagc gatgtcgaag
    11941 acgctttgaa aattccagaa gaatattatt acggcaagga ccatgagaag tacttggcga
    12001 tggcaatgct gttcgacgct gagccaatca aggtgcaggc agaatatacc ttgaccacct
    12061 tggatggaca agagccagct gaaccagtca aagatactga tgatacagtt ggaacgtttt
    12121 ttgaaaaaat gctttctgat attttgggag aagactaata agtgtcaggt tgtttaggag
    12181 gtcgctatga aattgagaga gcgtgaaaat cttgtctggc aacgtgccac ggcaggagag
    12241 aaggaaaagc tgctggatac aggtctagct gataaggcag gatacatccg ccttgtcaga
    12301 gagctaggta gaaagtatgt ggcctaggag gtacggcatg gaaggtactt acccatggtt
    12361 tgattatgac cgtgactatc tacaacctga ggaaccaaga caggtacatg atcctgatga
    12421 atgggtgttc agaggcggtc aatggattta tgtaggagat aactagttta tgagctatta
    12481 tcgtgagcaa tatgaattga gcaaggaaat agccagagaa cgactagaaa cctgcgaagt
    12541 tttgggcgag attatcaacg aacaacagga cttgatactt gccttgaaac gagaaaacga
    12601 acgcttaaag cgtgagaaat ggaatttgaa acagacgaaa aggagaaaga aatgagtaat
    12661 cttgcagtta ttcaaaaaga tattacagat gccgtgaatg cgaaagtgtc gcagatgcag
    12721 aacgaaggct tggtagtagc accaaactac gcaccagcaa atgctttgaa gtcagcattt
    12781 tttgccatga ccaatagccc aagcgggaac ttgcttgaaa agtgttcgaa agaaagtatt
    12841 gccaatgcct tgcttgacat ggttgttcaa gggttaagcc cagcaaagac acaatgttac
    12901 ttcattccat atggaagtac attaaaaatg acacggtcct actttgggac tatgaaggtt
    12961 gtcaaacaat tgtccaacgt gaaagatatt tgggcagagg tggtctttga aggggatgta
    13021 cttaaaattc gcaatgataa tgggcgcaag gttcttgaaa gccacgaaac agattggacc
    13081 aaccaagata acgcaattat cggtgcttac tgcatcattg aaaaagtgga cggtgagcga
    13141 attttgacag tcatgaccaa gaaagagatt gatcgcagct ggcaacagtc gaaaaataaa
    13201 tctgtccaaa atgccttccc tcaagaaatg gcaaaacgta ctgttatcaa tcgtgcagcc
    13261 aaacaattct tcaatacgtc ggacgatagt gatatcttga ttgaagctgt taatcggaca
    13321 acggaaaatg aatttgatga caatcgtcaa atcaaagaag ctgagccagt tcaatcagct
    13381 gggcaggata tcttggataa gatgaccggc aagactgttg ctgaagaacc tgcagaagat
    13441 gcaactattt ccgaagcgga aactgttgaa gaagcaggag tggatatttc caaaatggaa
    13501 acaaccgagc aggtcatcga tgccgaaacg ggcgaaatct tagatgagga ggaaccgttc
    13561 taatgtctga agaactatct ctatttgaca atctggaaag tatggcgcca gttccgactg
    13621 cgacagtatt agattttgac tttgaattca caccagccca aatcactatc gtgggcaagg
    13681 atttgttgga gcaggcactt actggatacg ttgaaaaata caagaactac accgtcacgg
    13741 cagaaacgtt tgaagacgat gctaaggtcc gagctgagtt aaacaaactg cagaagaaag
    13801 tcaagtcagc cgttaaagag aaactggcag attacaacaa gcccatcgac gaagtcaagg
    13861 cttgggtgga cggcttgttg gaacctattg tcaaaatcgg caagtcgatt gacgaaggtg
    13921 tgaaggcgtt tgaagagcag gaacgactta aacgcgccaa aaccattgag gaactattcc
    13981 agaaagctat tgcaagcaca gggaaagaca ttgacatccg tttgttcagc aagtattttg
    14041 atgagttttc taaaaaaaca tgcttcatgg ctgacaatgt tcgcccaaat aaagccactg
    14101 tcaatatggt tgccagcttg atagaggaag aagtggccaa gaaggatgaa tatgagtcag
    14161 cactaatcaa aattactgaa gcggctgcca aagcagattt tggtccagct ccttacgtac
    14221 gtaattttga acaaggagca agcctggctg acatcttgca ggcaattgct gatgataaag
    14281 ccttggcaga taagacccgt gaggaggtta aacgcaagca acaactggca aaacgaattg
    14341 aagaaatgac tgctattgca gaaagcaagg gactagatcc gaaaaagtat gctgatatgc
    14401 tcgaatcagg gacatctgca ctagttgtcc acgaagaact tgttaatgac gcaagaaaat
    14461 ggcaagaaga gcaggaccga atggaacagg aattcctagc tcaacacgga gctgtttgcg
    14521 gaaatactca aaatcgcccg aattctgacg aaattcaacg agaaaatatg tccgagggta
    14581 aatatacctc cgagcagaaa aacgcgtcag aggacaaaat aaagctgaat aagaaggttg
    14641 tcaaatggca aggtgatttc aggattactt tcccagacgg agagaccgct aagttattcg
    14701 gtggtccagg tggtttgtat gaacaacatg ggatagttgt tgagaaatta ggagaatggg
    14761 taaaaatcaa tgactaaact aactgaagaa aattactaca aagaccgtca atggttgtct
    14821 aattctcgct ttaaggcata tatggactgc gaagcaaaag ctaaagccat tgatgataag
    14881 gagtggacgg ataatcgtga cgacacggct ttgcttgttg gaaattacgt ccatacctac
    14941 tttgaatccg aagaagctca caccaaattt gttgacgcca acaaaactag gatgatttcg
    15001 agtcgtggtg cgaccaaggg cgagctgaag aaagagttcc aagttgctca gaacatgata
    15061 gatgccctga aagatgatga gaaattcttg ggactttacc atggtgctcc aggcgatgat
    15121 gttcgcaagg agatggtttt agaaggcgaa atcttcggta tcaaggtcaa gggtaaggtg
    15181 gatagtatca acttgactga agggtatttt gtagacctga aaactatgaa gactatccgt
    15241 ggtcttgaat ggtccgatgt ggaacgaaag aaaatacatg gagctgctgc taacatttta
    15301 ggttttcgct acgatgtcca gctggggctg tatcaggaat tgttgcgaca aatgggctac
    15361 cctaattttg taccattcgt tgtagctgtc agcaaggaag acgtgcctga caaaatgctt
    15421 gtcgatttcc cgcaatatca cttggatgaa ggtctgcaat tcttcgaaaa taacgtcgag
    15481 cgtgttgcag gtattattgc aggcgaaatc aagccgaaag gttgcggaaa ttgtgactat
    15541 tgtcgcagta agcgaaccct ggaccgcgtc atcaatttag atgatttgat tgccgggata
    15601 ttttagaaag gcgctttaaa tgacaaattt tgatgaaaaa atgaagcagt tgaaggaaga
    15661 atctatagct gaattttctc tggtagctgg aacaatcgaa gaagctagag agttgatcga
    15721 attggtcaaa agtaacggca tcaaatggtt cagcggagaa ccaattgatc atatgtctga
    15781 atatatttat aaaaaaatgc aaacataccc agaaaaaaga tttgtcctaa atttccgaaa
    15841 tggtttcaac ttgaagaaac aattgacaat cttttgtacc tgggaacaca gataacgtgc
    15901 cgtgaaccac gaaaaaagcg aactagaaag cgtgtcaatt ggaaacaatc agttgacagt
    15961 tggacgatag cgactgcccg tatttagcca aactcacaca atggcagtcg ctaattttga
    16021 gaatatggtg gctcatgaaa aagagtacgc tctctacaaa ggcgataagc tactggcaat
    16081 cggtacagca aaagaactag ctgaacaatt cggtgtaaag gtgtcaacga tacactttta
    16141 caagtcgccg acctataccg agcgaacaaa tgagatgaaa gcgaggcgat tagttgaagt
    16201 ttgaatttgt tttatccaac actaagcgca aaaaagagat gttaaatgct aacgacaggc
    16261 cacattggac gcagaaggct aaaattactg cctatcttcg ccgtatagcg tttttaaaac
    16321 tctccgaggg taaatatacc acctacacaa aaaacgcccc tgcgggcttg tggtaacgat
    16381 ttatgcaccg actgaaagac ggatggaccc gccgaatttt tatccgactg tgaaagccct
    16441 agttgacggt atgacagacg ctggtatctg gacagatgat aatcacgagg taattaagta
    16501 tatgacattc aaatacggtg gtttgagcgg gctaaaagat aaatacagaa ttgaaattga
    16561 ggtaaaagaa gtacatgagt aattttgaaa aattaaaaga caaagttgtc cgttgggcat
    16621 ttgagagaga gctgcatgag gcagacccta aaatccaatg gatgcgtgtc acggaagaag
    16681 tcggtgaaat ccgagatgtg ttgttaaaac caaccaagtt cgaagacccg aaacaagcat
    16741 tgaaagatgc cttgggcgat tcattggtca cgttgattgt attgtcttat cagttgcgtt
    16801 tggatttggt tgaatgtctg gaaattgctt atgaagaaat caaagaccgc aacggaaaga
    16861 tggtaaatgg cacatacgtg aagtcggagg atttgaaagg acggggagat tagcattgga
    16921 atggattgat ctagtatttt ttacacccgc aaacaagtca gatattattg caaagttaga
    16981 taatgacggg tatacatacc cacgctacaa cttaaaatat aaaaaagttg tgccagttat
    17041 tgatgtttta gcaatccaac gtgattgcga gagagtcggg atagcattag cggatgtcta
    17101 tcctaggcag atcacattgt tttaggagga aacagatgac agtcgatgag attataacaa
    17161 cctgtcacaa aatcaacgct aagcccaata tccatcttgg agaggtgcag gacgtgtacg
    17221 agtccgagga tgggcagata cggtattacg tcaacaggaa gaatggtgtc gcctatctct
    17281 atgcgacaca ggaaagaggg tgtttcttat cggtggtaaa aaatggacag agatagtgga
    17341 tttgatatgg aggtactaaa tgactaacga aaaaagagcc gtttggctct agtcgaaaat
    17401 atagttgtaa agttggacga ctttttgaaa agtccaagtg tctagctggg taattttgct
    17461 ggcatttcgt gccctgaaat caaaggtgta gagctgcatt ggattgacag ccccatctac
    17521 cttgtccgaa tggataggga cagataagcc acggctttct agtgcttttg ccccgtgagt
    17581 gatagggcag acggcaacaa atcctgtcat ctggctgtac ttgtgactgg agacgacaag
    17641 tgctggtcta cgtttctgga tttcttttcc aagcgatggg tcaaaatcaa tccagatgat
    17701 gtcttgtttt tgtggtatgt agttatcctt cattgtcaag caagaccact ccttcaaagt
    17761 cgttgtccat gatgaacggc tccatgttat caaagggatt tggaatttta ggtgcaagca
    17821 cgatgacatc atcaatgccc ttgtagacaa tgaattcctt gccttcatca acgttcaatt
    17881 ctttggggat ggtgatggca agcgagttac caactttacg tgttttaaca gtattcatga
    17941 tatatcctcc tatttgtgta tactaagtat atacaaaaca aagaaggaag tcaaatagaa
    18001 agagggggtt aacctaatct aaggccttcc gactgtcgca ggtcggacat tctgccgaaa
    18061 ataaaaaaag ccagcacact tgtactgact gtgagcaaaa acctaaaact attatatcac
    18121 agaaaggtaa gtgcagatga ctttttttcc tgaaataaac acagaaaaaa ccaaagcgaa
    18181 tgcaaaacga aaattgagag agtatccaag atggcgacgg gttgcgaacg atgtagatgg
    18241 tcagaaagtc actgcctcct acacatttga accaagacaa gctaatggaa atccgagcag
    18301 gccagtcgag cgattggcga ttaacaggat agatgcagag gcagaacttg aagcgattga
    18361 gtatgcagtt agtcacctat ttgacccaat gcatagaaaa atactacatg accgctattt
    18421 gatggcgtac cctaaaagtc attttgaaat acgggaagag attggatacg agaaaagcca
    18481 gtactatgat atgatttcaa gcgccttgtt agcatttgca gaattatacc gcgggagttg
    18541 tttggttgtt aatttatcgg agtaatagcg gaaaatgctc ggaaaaaaac tctgataaat
    18601 gtgatattat agtattatcg gataccgaga agagatagat gtttaatttt tcagtcattg
    18661 ctccttatga aatcgaactc ggtatcaatt ctaaagtcac acaacgaagt gtggcttttt
    18721 aatttttgat tggaggtgat gatattggcg aaaacaaagc gtggtagacc tacaaaaatg
    18781 acaaagtcaa cggtcgggaa attagagagt ttttttatcc gagggttaag tgaccgagaa
    18841 gcctgtcttt tagccgatat tcaccctgat acattatacg catattgtaa ggaacatcct
    18901 gaattttccg agcgaaaaga gttgttgaaa gaacgtgtta aaacacgggc aaaacttaat
    18961 atatcgaaag cgattgaaga tggggatata gacttgtcaa aatggtactt agaacgtcgt
    19021 gacaacgatt ttagaacaaa acaagcagtg acacatgatg gtgaagtcaa tatcaaccaa
    19081 gccaacccat ttactgactt gacaacggat gagctaagga agttgattga ggatggatag
    19141 agcggcaatc aggcaacaag cacgttttga gttagctcgt cgcgatttct tttactattg
    19201 tcatttgatg gcaagcgact tctacaaacc atctcgtaga tacttagtcg agctttgtaa
    19261 tgacttacaa ggctttttaa gtgataacga gcataatgtg ttgattatca acgaaccgcc
    19321 cagacacgga aaatcaagga cggcaggtat gtttgtccag tggttacttg ggaacgacaa
    19381 caataaaaag ataatgactg gttcgtataa cgaaacgtta tcaactgtat tttcaaagaa
    19441 tgtcagaaat gctattcagg aaacgaaggc agataaagat gttgttgtgt ttaacgacat
    19501 ttttccagat acacatatta aatatggcga tgcagctatg aatttgtgga gtttggaagg
    19561 cggttataat aactacttgg ctacaagtcc aacaggtaca gcgactggtt ttggtgctga
    19621 tattattatc gttgacgacc ttatcaagaa cgcggaagaa gctaacaacg caaccgtctt
    19681 agaaaaacat tgggagtggt ttacgaacac gatgctttca cgtcttgaag aaggcggaaa
    19741 aattatcatt atcatgacac gctggcattc gcaagactta gcgggtaaag cgctggttga
    19801 acttcctaag tctgattaca aagtcaagca cattagcatg aaagcctacg acgaagcgac
    19861 ggatacgatg ctttgtgacg aagtattgag taaacaagct tattttcaaa agactaagac
    19921 tatgggagct gatattgcgt ctgcgaacta ccagcaagaa cctattgaca tcaagggcag
    19981 gttgtacagt ggatttaaaa cctatgttga caagccgaca tttaagcgta ttagtgctta
    20041 cactgatacg gcagatacag gcaaggacta tctagctagt tatatctacg gcgtcactat
    20101 ggacaatgaa gcgtatatct tggacgttgt tttcacaaag gaaccgatgg aagtaacaga
    20161 gcctttgcta gctcaaaaac tagcagagtg gcaagtcaat acatgtgata tcgaaagtaa
    20221 taacggcggt cgcggatttg ccagaaatgt tgaacgtttg acgcaagata gctaccaaaa
    20281 ccgatataca gtttttaatt ggtttcatca gtctcaaaat aaacaagcaa ggattttgac
    20341 gaatacgacc tgggcaatag agcatatcta tttccctgaa aactggagac atcgttggtc
    20401 agaattatat caaaatctta tgagctatca aagagaaggt aagaatgctc atgatgatgc
    20461 tgcagatgca ctgacaggcg tagtcgaagc aattaatgac aaaattagaa ctaaagccaa
    20521 agtcaaacgc aagtcactat tcggcttgta gaaaggagca aaatggaaga aacattagtc
    20581 tatagtcgct cattgtacga tgagcagaat ttggataaag atatcattta caaattgata
    20641 ttaaagcatg aacagacaag tagtaaactc aagaagctaa aagattacta cttgggtaag
    20701 cacgcaatcg aaaaacacac acgcagaagt aatctgccaa attttaagac agttgccaat
    20761 cacgccaagg acattgcgga taccgccaca ggttacttta tgggcaatgc tatccgttat
    20821 cctaagaccg acgatatgga cattaaagac ctgttagaag cctttgataa tgcagatgtt
    20881 gattcgacag actcagacaa cgctttgaac atggcaatct atggcagggc ttatgagtac
    20941 atctatgtca aagaaggtga aaatgagctg gtaactcgca gtctagaacc agagaacacg
    21001 tttatcgttt atgatgattc gattgagcag aagcccttgt ttgcagtcta ttactatcaa
    21061 acaaaggacg atgtgacaga agaaagttat tatcgagccc aggtagtgac cgagaacctg
    21121 caatatagca tgtctttgcg ggagcagaag aaagaatcag aagaaggtgt tccacataat
    21181 cttgagggac tgccgattat cgagtatcga aacaatcgct acatggtcgg agattatgag
    21241 caacagatta gcttgattga tgcgtataat tctctgatgg ggaaccgtgt gaacgacaag
    21301 gaacaagcta ttgagtctat tttggtcttg tatggcgctg cgctggcaga tacaccagag
    21361 gaagcaaggg aagccatgca gatattgcga gaagaaggtt tgttggaatt gccaaaagac
    21421 gcaaacgcag aatttttgaa gaatgttttg gatgaagcgt ctgtggaagt attgcgcaag
    21481 tcgttgaaag aggatattta cacgtttagt catgtcccta atctgtcaga tgagaatttc
    21541 gcagggaata catcaggggt gaaatagttg ccctccttga aagtaatttc aaggtaataa
    21601 actgggttaa aattggaagg cgcaaaacga taatacctaa catattatcg aagctaatca
    21661 attaccactg ctggcagaaa tgtcagtaag gtttaacgac taggtggagt aagctaagtt
    21721 taaaagacgg tgtcccccgt ctttttttat atgcagaaac gcccacgaaa tccagcgccc
    21781 cattggggtg aagagatagt ctgaacttat gggaaaccat aagaagtaga ggataaagag
    21841 ccactacgat aacaaaaatg agctatggaa tttaagcttt tggggcttga aatgattacc
    21901 aagaccaaag agcgatacta tatcaaatct ttacacaagc gcatacagat ttttgcgagt
    21961 tattacaact ggtcacagat ttacgaaaac gcaaaggcaa ttattccaca gtttagccgt
    22021 ggattaccta agaacttgct ggagctgtcc caaatcatca gcaatctgaa agacaaggtc
    22081 agtctgcgcc agcttatttc cctcttgcca tttgtggaag acccagatgc agaaattgag
    22141 gcgcttgaaa aggaaaaaga gaccgcacag gaggagccag catttagcca gaatttaccg
    22201 tatgaagagg atgtgacaga tggacaatct gaagtattgg gagaagcgga aagctcagcg
    22261 aatggtccag gcgatggacc aggcagagca aaccgcaaag caactcgacg aaatccacaa
    22321 gctggcaagt aggcatatca cttcaaagat tgaccagatt tttgagagtt atcgcagaga
    22381 ccacggactg acggaagatg aagctaagag ggtactggct aatgtcaagg atttatccga
    22441 tattcgggag ttaaaatcag ctttacagaa tacaactgat agtgaagaga tacggcaatt
    22501 gcttatctta ctcgattcgg ctccctacgc ttccagaatt gagaaatacg aggctttaca
    22561 gagggaggtg gataatttac ccacccgact gtataaagtc gaaaatgagg catctaggac
    22621 cttctatgat gagttcattc cagatgctta ctaccattcg atttttgatt tgcaacagca
    22681 gtctggtgtg gcatttgcat ttaacaggat tgacccagag gaaatcagag ctatccagca
    22741 gacgccatgg ctgggggcga attactctga aaggatttgg ggcaatactc aagccttagc
    22801 aaatgaatta caaaagcaat tggcagtcag tctgttaaca ggtcggtcag ctcacgagac
    22861 tgcagaagtc ataaacgccc aattcggaaa aggtagttac aactcacgca ggctggtgcg
    22921 gacagaggct agtcatttcc atgctgagat ggaagctctg gcgtatgaag aagcggaagt
    22981 tgagcgttac aggcttgtgg ctgtactgga cttgaggaca tctagcgtct gcagggagca
    23041 tgatggagaa gtctacttgg tcagcgaaag agtgaaggga aaaaactacc cgcctttaca
    23101 tccttggtgt agaacggtca ctatagcact agatgatgat gaatggttag ctaaagcgac
    23161 caggagcacc agagacccag tgacaggcaa gactattcaa gtccctgctg atatgacgta
    23221 taaagactgg tatgagaagt atgttaaacc aaaatacaag gcggataact tggacatttg
    23281 gaagattgaa cgtgccaata accagtatga aaagtacaag tcaattcttg gagataaggc
    23341 gcctaaatcg cttgaagact atattgattt gaagtataat gataaagagg gatatgagcg
    23401 gttgaaggac cgagctagat ggataaaagc gaaattcccg tctgagaagt cttttaatgg
    23461 tcattttgag aaacacggtc atgagtttcc aagcttgact aaagaagagt atcaaaaact
    23521 tgcatcggaa ctcatcgcta gccctatcga tgaaaatatt ttgggttatg agaccgaggg
    23581 tggacgtaga gttcgctatg ataaggctga gaacattatc gtaataggtc agcgaaacaa
    23641 aaataatcag gtgcgattga atacaatgtt aaaaccagat accggagagg agtattatca
    23701 tgaaaactac ttacgagatt ttcctgattg atggagaaga atatattcac tgccctgttt
    23761 gtggacggaa tgtcatgtta tttgatgtgt gtgaatgcaa ttgggaaaac actggtgaaa
    23821 caaacatcga cggcggtccg aatagaatga cgttagctga agcaaaaata gcatttgcag
    23881 aaggcagacc aattatttaa ataagcactc aagtaatcga gtgctttttt cgtgttcaaa
    23941 aacaggagaa aggtatggac ttatattttc gttttaggct gattatagag agtgctgtgt
    24001 ttatcattgg atttccgttt gtgttataca aactctataa attatataaa gatacaaaaa
    24061 aatagaaagg aggtcgctat gaataagcgt attaagaaga aacgtgaact gattgaacaa
    24121 gttcagggaa ctaaagaagc tgttgatatt gcattgaaca tcattaaaag tctacttgat
    24181 gaaaacgcca aacaggcaaa tgaaatttct gagctacgtt caatcgttga acgcaatgca
    24241 caggctacga actcgagatt tgattatctt gaaaagaaag tagctgacaa gctgtccaag
    24301 aagtcttggt ttagtagaaa gtaggagaaa aatggaaaaa caagttatta tctttttgaa
    24361 aaatggtgaa acattattgt ttcagggtgt taataaaatt gatttgaccg atgagctcat
    24421 tgcatttgat tactttggca agagtacaaa ccaagaaaaa ggcggggtgt tctattttga
    24481 caatattgca ggttggtctg tatcggctga ccttctgggc taggaggtgg tcactcatct
    24541 tgacagcagg aaagactgct ataaacaact gtaaattacc gtaaaccgtg tcgaattcga
    24601 ggcggttttc tttttgccca aaacatgctt atggcgctaa actgtgcaag atattacagt
    24661 ccgacaggac ttaaaacaag gagggccttt atggcagatt tagttgaaaa cggtgtagtt
    24721 gatgaagttt ctcaagagga agtcgagact caggagaagg caaaaacaga ggctacagca
    24781 gaaaagacgt acacccaagc ggaagtcact gagatgattc aacaaaatgt gaatcgtgca
    24841 gttgctaagg ctcacaaaga cgctgaggaa cagtttcaaa acaaacaaga tgaagctaag
    24901 aaattagcca aaatgaacgc cgaagacaag cagaagtacc agcttgataa gcgtgaacag
    24961 gacctggctg accgtgaagc agcaatcaca cgccgagagc taactgcaga agctaagacg
    25021 attttaagcg agcgcggctt accgatcgaa ttggtcgacg tggttaatct tgctgacgct
    25081 gacagtgtac gtgattccat cgatgccatc caaaagactt gggaagcagc agtcttgaaa
    25141 ggcgttgctg acaagaccaa aggaagtgca ccgatgaaga aagcaccaca agaacaacca
    25201 accgttgaaa agtgggaacg tgattttttg aaataagaaa ggaaaaataa aatatgccat
    25261 ttgaaaatat taacaccgca acatcccgtg aaaaattctt aggaattatc gagaaagttg
    25321 ttgctaaaaa atcttactca gctccgcttt tgctatcgaa tgacgcagtg gaaatgaacg
    25381 ggcgttcgtt tactgttaca aaatctgaca caacagaact caaagattac aaacgaaatg
    25441 cagacaatga atttgaccat gcgcaaaccg aagagcgcac ttacaccctg gatcaagaaa
    25501 aatactgggg gcgttttgtg gatcgtctag atgagcgcga ttcaaacggc gaagttaatg
    25561 tcaattatgt tgtcgctcgt caagctgccg aagttgtggc gccgtacttg gaccatcttc
    25621 gttttgacgc tcttcttggt aatgtcagcg ataatgttgc accagccagt actaaaggtg
    25681 ctaataattc ttaccaagct gtcttggatg tttctgagaa actggatgaa ttggacgtag
    25741 tggaaaaccg cttgttgttt gtgacgccag cattttataa agcgattaag tcagaaattg
    25801 tcaaccttcc acaaggtgat actaaccaaa ctgtacttta caaaggttat gtcggtcagt
    25861 tggatacatt cacggtttac aaagtaccat ctaagtacct taaaggtgta caagctgttg
    25921 cgacaatcgg tggggtagtc gtttcgccta tccaagtaga tgaaacgaaa tataacaaca
    25981 acatcccagg tcgttttggt gaattggtgg aacaattgct gtatactggt gcatttgtct
    26041 ttgattttga ccagaagtac atcatttcta ttgcgacctc taaaccagaa gcgaagccaa
    26101 gcgcacaagg taaattgaac atccgtgcag agcagtgggt atctggttca acttatgaag
    26161 ctggcgcccg tgtacagaac ggaggtaaat tgtttgaagc cactaagaaa gtaacttcat
    26221 cctcaacagc tcctagtagc gattcagcca actggaaaga gattgtctag gaggtcctaa
    26281 atgcgcttta aggtattaaa agagtttact gatgatgaac ttggttttgt tcatcgtgtt
    26341 aacgatatca tcgaactaac caaggaacgt catgaacaga tgaagaaaaa cgctaaattg
    26401 caagatgtga atttggctga ttacattgaa gaaatcaaga ccaaaggagc agaagctcct
    26461 gcaaaatagg gggcggatat gctagaagat ttgaaaatat tgacaggcga gagtgattat
    26521 aaaatcctct cgtctttgct tttgagggct aaaaatatca ttttgactga gacaaatcga
    26581 agtcagctta cgccagcgct ggaatgtttg caactggaag tagcgcttga gctgttcaat
    26641 cgccaaggta gcgagggcga aacatcacga agtgaggggg gcgtgtctgt gtcttataaa
    26701 gacgggctat ccgatactat tttgaatggt atccgcagtc atagactcgc aagggtggca
    26761 ggtcgtgcgt ttgaagcgaa accgactgaa gccgtatctg atccgtaaag ctgtcatagt
    26821 gacgagtgat gagggtatca agaaagctac ttatagcgat gttgctgctg aaatacgggc
    26881 tgagatatgg cctgctagtg gtcgtttaca agctgagata tacggtcaga gattggccta
    26941 tattttgaat tgcttggtag accgtgaaac gcttatcgaa gagaatgatg gcttttgtat
    27001 caatagcgac aaagtaaccc ataaagtcat atctataaaa cgatatacaa accatcaatt
    27061 gttggagtta gaacaatgtc gcgattgata ggtgctgaca agctaattgc aaaatttaga
    27121 cgattatcag gacagcagca gaccgaaatc atggcgaaag ctgtacacaa cactgccaag
    27181 aatgttgtcc aagcggatgc aattttgcgg gcccctgcaa acaatggtga tttgcgagca
    27241 ggtattaaag ttcggatgtc taagtctggg aatccgaggg ctgaagtggt tagcacatca
    27301 gaccatggcg gatttgttga atttggtact ggtccaaaag gtgctgcaaa ccacgcaggt
    27361 atttctccaa atgtcagcgt atcttatcgc agtacacctt ggtacgtcca tgagtcccag
    27421 attgatgttg gcccttatcg ttttcaaaag attggcgagt tttacaagat gtttggtcaa
    27481 gtcgcccagc cttatcttta tccagccctc aaggataatg aagagcgagt cacgaagaac
    27541 atcaatagat ttgtcaaacg gaagctagtt gaagaggtca gcaaatgata aatattaagc
    27601 ctattattta caagaaatta aaagaagttg cggataatgt gacagatact tacccgcaag
    27661 attgggagaa tttcccagtt atcatctact tagaagagga aaacaagcct tacgatatta
    27721 cagatgatac agaacagatg tcctatttgc gctacaaggt cgatattttc cacaatgata
    27781 gcacgtcaga attagccgta gcgattgatg cgatttttgc atctctcggg ctaaaacgta
    27841 catccagcgt ggatacaccc gacccaacgc acttacgaca caaagtcatg cgatttgaag
    27901 ggattttaga tctaaactcc cgaatcgttt accaatacag aatggaagga taaaacatgt
    27961 tagcaaacgg aattaaattg aaaatgagcg agaccaaggg gtctggctat acagttatcg
    28021 agggcttgaa agaagttcca gaacttggta ttgaccctga gaaagttgag aatacgaccc
    28081 ttgcggatac cattaagcag tatgaatttg gtattggtga cgctggtgaa ttggaatata
    28141 aattcaagta tgagaattcc aaaacaactt ctagttatcg tactttgcgt aaactggcag
    28201 atgccaaggc tgtacgttat tttgagcaag agtatccaga tggtactact gtccgcttct
    28261 cagctcagat tgctgtcaag ctaggcggtg gcggtgtcaa ctctgctatc gagtttacat
    28321 tgaaattggc tctgcagtca gatttagaat tcactgatcc agtagtactt taaggaggta
    28381 taaatgtcaa cacgtaaacc atatatcgtt tggaccgtca agggaacaga ctataaattg
    28441 cgtcttagca ctcgccaagc ctgtgaagtt gaagaaaaat tgggtgttaa tttgctcaaa
    28501 atctttatgc ccaaaccagg cgaacagttc aatctaccac ctttgaaggt catgttgttg
    28561 gttgttcaag gtgctttgca gaagttccat catggtatca agttggatga tgtctatgac
    28621 ttgttcgacg attacatcga tgaaggctat ggacaaactg aattgatgac tgatatcatc
    28681 gtaccattgt tcgaagtatc gggttttatt cctcggaaca aggagaagga agaaccgacg
    28741 ttgacagtag tcgagtaggt tctggtcctt gttcggtcgc agaattgatt agcgggtttt
    28801 atccgacagc attagatgca gggatagacc cgttttcttt ttgggaatac actcttttgg
    28861 aattgaaaga gttggttgag agttacaaca ggcaacaatt ccagaagcag aaggaaatag
    28921 cttctcatca ctttattcaa tcgcagatga tagctcgctt tgtttctctg atgtttcagg
    28981 aaaaaggtga ggcaccagac atttgggagt tctatcctac tttatttgaa gaggataggg
    29041 cgcagattga acaagctcgc attgagcgag atttgaaaat ccatcaggag cagatgaggg
    29101 cttacgcaga gagaatgaaa ggaaggttca caacttccga ataatggaga aaggagggaa
    29161 cgatggctgt taccttagaa gagttgagag ttattgttga aggtgagata gcaccgtttc
    29221 agaagaagat gaagcagtta gaatctcaga tgaagcagac tcaaaacaaa attgaaaaca
    29281 agacaaaagg ccttagagag cgtgtaggtc aacaagctgg tggcatggcg actgctttgg
    29341 gcaaacttgc taagattacc gcgttagctt atctaggcaa gaaaatgtta gaccttggta
    29401 tgtattctac ccagatggct cttgaagtca gcgcttcggt caatcaaatc aaacgacaga
    29461 tgggcgaaag ttcccaagca tttttaaaat ggattgataa taatgccaac gctatgaaca
    29521 tgagcgtagg tgaagctact aagtatggag cggtctattc caacctgttt tccaacttta
    29581 tcaaggattc taacaagctg agcgcttata caggtaagat gttacagaca tccgctgtga
    29641 ttgcgcaagg tagcggacga accatgaccg atgttatgga gcgtattcgt tcgggcttgt
    29701 tgggcaatac cgaagcgata gacttttgtc gcactacttg gaaacaagta gcttaagaac
    29761 ttaccaaaat cggtagaaat ctaagttttg agaatcaaaa tatgacaata ccgaggtaaa
    29821 ctaagcgatt aaaacagctt agtcaccgta gagcataggg attgaacctg tgctttttgt
    29881 tttggcaaaa agtacagaat aaaatatccc cacgagtggt aagcacctca tcaggtagcg
    29941 ctggaggtga aaatatatgc cgaacttgca ggaaactgca agaagtacgg ataaaaagcc
    30001 gtgcgataac aaaattgaga agaccttgga ataaatgtca atgttgctat gattgaatca
    30061 accaacgcat tcaagcgttt tgcgaatggg caatcttggc aacaattaga ctacaacacc
    30121 cagcaacaaa tccgcttgat ggcgattttg gagcaagcaa cagctaagta cggaaatacc
    30181 ttacaacagt ctgtaaacgg tcgtattagc ttatttaaat cattgctgag tgatgcagcg
    30241 ttaaacatcg gtaatgctat gttgccgatt atcaacgcta tgatgcctgt ccttaattcc
    30301 tttgccatgg ttctaaaaaa cgtcactgct aaactcgctg agtttatcgg cttgatgttt
    30361 aacaaaaagg ctaaggtgaa aaacggcagt gctttgggca atgtcgccca aggagcgcaa
    30421 aaagccaacg acgcagttgg tgatttgggc gatgcaatgg gtggtgtcga tgatgcttct
    30481 ggaggtactg caggcaacct agacgatact gccaaatcag ctaagaaggc agcaaaagag
    30541 ctgatgggat tagctggttt tgatgaaatt actactctga atctgaacaa agatgatggc
    30601 tcggatgggg ctggttctgg tggtggcggt aaaggtggta aaggtggtaa aggtggtaaa
    30661 ggcgggggag gtcccgctga catcttgcca gaaatcgctc ttgaagacat ggacacccag
    30721 ttcaaaagta tttttgatgg gtgggacaaa gtcttgaaac ctctttttga ttatctatct
    30781 aaattatcca atctctttaa agatggtttt aatatgtcgt tcagagctga aagtcttgat
    30841 cgctttagag ctgcattagc aggaatttgg caatctctga aagatatttt cgctgatgga
    30901 actgtattgc aggcggccgc aaggtttgga gagaagctag cttttgcttt aggtcaaatc
    30961 actggtgctc tagccaacat catcatggga attgcggtat ttatcgccga aagcttaaat
    31021 aaatcactaa acgacaccaa attggatata aaaggttggc tgatacgtca gttcgatata
    31081 gcaggcgatg cagtcgcaag cattggaaat atcgctcaaa tgctcggtca aacgttttat
    31141 gacgtattta caagtgtagc tgcgacaaat atcggtgcag atattctttc agcgataacc
    31201 tatggggcaa cggggattgt tgaagttggt tcaaaattag gtcgcgatat actaagcggt
    31261 atagaacaag cgctagttga taaccaagat aaaataacta ccgctttaaa cggcttgctc
    31321 tatgcccttg aacctacttt cgaatctatc aaaaacctat tcaagaatac atttgagggg
    31381 ttgagcacaa cttacgatga gtatgtaaaa ccattctttg attcgttcaa tgaaggtttt
    31441 agttctatat ttggaacttt gctagatagc tggaacaatg atgttcaacc agtgttggat
    31501 agcatcggcg aaaagtttgc tggattattt gacaatcata ttcaaccatt catcgataat
    31561 tttctatacg cattcggaca aattatggac gtcttaaagc tactttggga taccattctg
    31621 gtaccgctat ttgattggat agctgcgaac attttgcctg tccttgtccc gacattccag
    31681 acattagctg actggtttgt ccaagcgtgg actgtggttt tcgatgtttt gggagctgtt
    31741 ttgaaaatcc taggcggaat catcgagttc ctggttggtg tatttactgg tgattgggaa
    31801 aaagcttgga atgggattgt tcagattgct aaaggaatct gggaattgct gtcttctatt
    31861 ttcaagttcg tttgggatac aatagtttct ttcttgaaag gtgtttggga taccattgta
    31921 gctatattac aagctggttg ggatgctatt gttcgaatct tccaaggtat aggtccgtgg
    31981 ttcggcgacc gttggagaga tatcgaaaac atcttctcta aagttggtca gtggtttggt
    32041 caaaagtttt ctgatgcttg gaaggctgtt caaaacgctt ttaagaacat tgggcaatgg
    32101 tttggtgccc gttggaatga catcgtgaat gtttttcgag atgtggcaaa ttggtttaac
    32161 caacgattta ccgaggcttg ggatgcgatt gtgaaaatat tccaaaattt aggtaagtgg
    32221 tttggagacc gctataacga catcaaaaat atattgtcat ctgtcaatca gtggttcggg
    32281 cagaagtttt ctgacgcttg gaaggctgtt caaaacgctt ttaagagcat tggacaatgg
    32341 tttggcgacc gttggagaga tataaccaat gtattttcga agacaggctc ttggtttgga
    32401 gagcaatttg gcaaagcata cgaaggtgtc aaaaaagcat ttagcggtat cgttgaattc
    32461 ttcggaggta tttgggatag aatcaaatct acctttacaa atgtcgggac catggttgga
    32521 aacgccatag gaggagctgt ccgaggagtg attaacgggg tgcttgcaac tgttgaaaac
    32581 actattaata gtggtattcg gttaattaac ggcgctattt ccgtaatcaa caaacttcca
    32641 ggggtaaaca tcggtagttt tagcacagtt tctcttccac gccttgcccg tggtggtatc
    32701 gtggatagcc caacagtcgc tatgattggt gaagcaggta aagaggtggt tatgccattg
    32761 gaaaatacag gcttcttaca aaccatggga cgtgtggtcg gtggtgcggt agtcaatgct
    32821 ttgggtggtg gaatgccaca atcatctggt ttgccaagcg gggatatcgt tatcaatatt
    32881 ggaagcagag agtttggacg ctttgcgatt gatgagatta acaaagcaca agagcaagct
    32941 ggcgaattgc tgttaaacat ttaggaggat atatgagtcg attgatcatc aatggagtta
    33001 cagttgtacc tcctaaatct tttcaagtcg ctatcaatga tgtagatggc gagacaggtc
    33061 gaaatgctaa cggagacatg gtcagggata ggattactac caagcgtaaa ttagaatgcg
    33121 agtgggggat gttaacacag gctgagatgg cgttgataca atcagctgtt cagcctgtat
    33181 ttcttgaagt gtcttaccca gaccctatac ttgggcagac gtccaaaacg ttttatgttg
    33241 gggataggac tgcgcctgca tattccttta ctgaaaaatt caaaccctgg agcggtttaa
    33301 aatttagttt aatagagagg taaggtggtt ggtacggtaa catttaatca agctatgtta
    33361 gctaaagata gggtgtttgc tattcgtgca ggcgcctata catctagcga catcaaagaa
    33421 gcgagtttca attatggcta tatcagtggt gacacgttta agccaggcgg aaccgttgct
    33481 ggttcggcta aattgacctt tacatctatc attactactt ttaacaagtt ggataagatt
    33541 tatccagaaa ttgggctctt ggtaggcgat agctatgaat gggtcgccat gggtgagtat
    33601 tttgtcaatg acatcagtat tgaccgcaac aggaatacta ccgaattgga tttgatggac
    33661 ggcatgttca agctaaacca gccttttgta tctgatttga cttatccagc acaaattcga
    33721 gatgttattc gagagatttg tgtaaagacg gacgttgaag tggaagaggg tgtgcttgca
    33781 ttgagcacag tgcaaaaacg tgtcctcgaa aaaccagata aaaaagatat tacttttaga
    33841 gaagtgttaa gccaagtcat tcagctactt ggcttttctg ctttttttaa tcggcagggg
    33901 aagttggaaa tccgtggtct aaccgaatcg aatattacca tcacagcaga taattacttt
    33961 ttacacggct tgtccaagag cgaagtcgaa tatcagatag ctggcatcgt atgcaagaag
    34021 gataaggaag agttatctgt aggtttacga accggtcggt ccttggaact tgagaatcca
    34081 tttatgagtc aagaatatct taatgacttg tactacgact taaaagaaat caagtattat
    34141 ccattttcgc ttgattggca aggccatcta aagttagatg tagggcagtg ggttacgctt
    34201 aaaacaaaca aagacgagac ttacagagtc cctgttctga gtcaatcttt cagtttcaag
    34261 ggcggtctaa agtctaagat tagcgcagac agtaaggctg ggaatgacac tcagtatagc
    34321 tacaaaggtt ttttaaccaa gcaaatcgag cagatgtcta cccaaatcga tgcagaatta
    34381 caacaacgga tggaagaggc tgataaagaa ttagataggc gagcaactga gttatcaggg
    34441 gctatcgaac aggtgcaggt agatgctgcg gagtatgccg acagtatcaa gcaggaaatc
    34501 agtgagcgcc tggatggcac agatgctgaa taccaggcgg acaagcaaag tcagctaagg
    34561 caatttgacg aatgggccaa gatactagct caaaaagtat ctcaagcgga tatttcggtc
    34621 gaccctgaat caggccgtat ccaattaggt actaaggaga ttacagctca aaatattgcc
    34681 agtctactaa tcatggacaa gggtgtcact accctattgg ccaataagtt ttacctaggg
    34741 gcaccaagtg aaaacttgat taagcttagt ccagattatc aaactttaac caaggcaagc
    34801 attgatgcgg atggttacta tgtcaacgaa tctaccgata atctattctg gctatcaaat
    34861 tatgagccga atccgattaa aaatggggat gagataaaaa tcactggttc aatccaatcc
    34921 acaaaagccc aaaccttgag ggtagaagtt catttctttg acaaggacaa aaccagggtg
    34981 gtcgtcggtg ggtcagtttc aataaatatc aactctggag ggagtttaat tgatacctcc
    35041 ttggttatcc cagaagttcc attgacggca aagtattacg cgattgcgtt tgttgcatct
    35101 aataacaccg acattcgcgc tgtctgcatt tccagtgccc aagcaaggat taagaccggg
    35161 gtagatatga ttgtcgatgg ttcaatcaca acggctttgt taaatgcagc agagggtgat
    35221 ttcgctcgat tagtagccaa gtttgtccag gccgaagggt taacggctaa agttgctgat
    35281 attcaatcgg ctaaaattgg ctctcttaca gtcgacaatg acgcatggat gcggaaactt
    35341 gtagcaaaca ggataataac agagttacta caggccttcg tggtacaagc tgataaaatc
    35401 gttgttccag ggactacccg gcctgtcttt acaatcgaca gggatggaaa tatatcgatt
    35461 gatactccaa tcctaaaagt ccgtggcgaa ttactagcca ctcaaaaaga ccttgaaacc
    35521 atcgcgctga ctcctggacc aaaaggtgaa aaaggtgacc ctgggcaaag aggcgctgat
    35581 ggacttccag gtcgtgacgg agtgggtatt cgttcaacgg ttgttaccta tggtatcagc
    35641 tcaagtgata gcgttcagcc tagtacatgg tcaagcaatg ttcctacgct tgtcaaaggg
    35701 cagtatctgt ggacaaggac ggtctggact tacacggaca accacacggg aacaggctat
    35761 caaaagacct atatttctcg agatggaaac aatggtcgtg acggtatcgc aggcaaggac
    35821 ggagtaggca ttcgttcaac gacgattact tacggaaaat cgacatctgg cacgattcag
    35881 ccaacgtcat ggacatctca ggtaccaagc gttcccaatg gtcaatttct gtggacaaaa
    35941 accgtttggg catatacgga taatacttca gaaactggtt actcagtggc taagatgggg
    36001 gaaacaggtc ctacaggcgc aaagggtgac cgaggagcta caggtccgca aggcccacaa
    36061 ggaccacagg gaatccaagg tctccaggga ccacaaggtc ttcagggtcc taagggagac
    36121 cagggaatag ctggtcctaa aggtgcggac ggaagaaccc aatacaccca cattgcctac
    36181 gctgataatg ctactggtgg tggttttagt cagacagacc aaactaaagc ctatatcggt
    36241 atgtatcaag attttactgc tactaatagc accaatccta gctcttatcg ttggacgaag
    36301 tggaaaggct ctgatggagc ccaaggagtg cctggtccca aaggcactga tggtagaacc
    36361 ccatacatcc attgggctta ttcggatagt gcagacggta caggattgac tacatcagat
    36421 aatggtcagc ggtatatcgg gcattactcg gactacacac aagctgatag cacggacaag
    36481 accaagtatc gctgggcgga tagatgggca aagattgagg taggagctag aaattatttt
    36541 agaggatata aaaataacga ggaaatagca ctacctgctt atagtaatgt cggtagtttt
    36601 attcaatttt acaataagtt gacccatcct ctgccagaag ctaatggaaa aacttttaca
    36661 atctcattcg aggctatttc tccgaacggt gatactgttt tacatgttta caacgcgaat
    36721 ggaggtcctc aatattttta tttcagcgca ggtactatcg gaacggctac gaatgcttgg
    36781 aagaaattca aagttaccgt taagcctatc actcaagcta cgtatacctc ctcaactaac
    36841 tcaaatagga tagaaattta cgctccatcc aaaactggag ttaaggttag aaatatcaaa
    36901 gttgagttag gtacagttgc tactgactgg tctcctgccc cagaggatgt tgacgaaaac
    36961 atcaactcca aagccgacca agccttgacc caggaacaac tcaacgccct taacgagcgt
    37021 gctaacttgc tcaaaactga gttggatgca aaagtggcga ttgatgcggt taatgagctt
    37081 ataggcgaat atcgaagaat gttagatgtc gagagtgcca atgtccgaga aaaccaagaa
    37141 gcattagtag aagcagccaa acgggtcgca gcaattgaat tgaatttagg tcaattcgca
    37201 gagcgtgttg agtttttaga tagctacatg acgcgttcaa acgaaggatt gattatcgga
    37261 aaaaacgatg gctcagccct tattcgagtg tcagaaaacc gtatctctat gctttcggcg
    37321 ggtaaagagg ttatgtatat ttcgcaagga gttatccata ttgataacgg tatctttacc
    37381 aaaagtttac agattggtcg ttttcgaaca gaacaacacg tcgttaattt ggatatgaat
    37441 gttattcgtt atataggata ggagaacaca tggcattaga aacaagaggc ataaaacaaa
    37501 tatatcggga ctctaaaaca ggacaagaat ccacgggaga ttcagggcat cgtttttata
    37561 tttacgataa tgcaaaaaaa gagtatatag ctgaaatcgg ctcctacatt aaagcaatgg
    37621 gattgaaggt tgtggataat aaaccaaagt cgacaggcta cggtatattt ttctacgttc
    37681 gtatgctcaa agctgtggac ctgcgttctg gcggagaagc tttttttgag atttcactag
    37741 gttccaaagg agttaaaaag aaaatccctc taaccaagaa attataccca gtctcaagag
    37801 atacatatag cgggtcctat gggacaacat atggcatttt tagagatgag gctgaaggag
    37861 gagtcgataa cccaaggtat gaagaattag gctttgttta tattgaagaa cctaatgtat
    37921 acgcttatac cggttcgggt tataaacatt ttgaaattac aactaatttt ttcgatagaa
    37981 gtcaacgagc tattaccatt cgttttgaag aaggcaccca tcatgtccgt gattacgatg
    38041 ccaacgtcta tgtccagtct tttgccagtc ctattggcag tagtaatacg ctaaacctcg
    38101 tcaaaccttc ccaaaattat tcagaagata aatatagtct gtcctattat tggtatggaa
    38161 agagggggat tttagcgacg aaatcaaccg ctactagctt tgagttcacc ctacctaatc
    38221 atttttggga tgatatccca gaatcttttg atgggacagg gtatatcatt ttggataggt
    38281 ggacggttgt aggagggaga gattctattt tttcaacctt attcatcccc tttcgtgggg
    38341 aagtcccagc tcacgtaaaa ccatctattc aatcgatcac tctgacggac accaacacaa
    38401 aggtaagcgc actattggaa aatcaagcgt ttgcgcagat attgtccaat attagtatca
    38461 atgtatctgc taacggcatc tacggttcga ctatcaaaag tatccgttcg gaaattgtcg
    38521 gcaaaaatca agtcgtgact tctacgggag gcagttttgg cgttatgaat tatcacggtc
    38581 aaatcaccat acgtaccacg gttacagata gtcgtaatag agtgtccgat tcggtagata
    38641 gagtggtgac cgtacttcct tatcatcctc ctgctttatc ctttacagtt agtcgagggg
    38701 ggtctttgag aaaccaattg atagtgtcac ggtctgtaaa aatagctccc cttacctgga
    38761 atggtcgaca gaacaatcgt ttgaaactga attttagtac ggctgcatta ggcgggagct
    38821 ttacccctaa taacagttcc gccaatatag acgcaactac gatagcggaa cttatcaact
    38881 ctcaagcaac tttggcagga acttatagtt ctctttcctc gttcgaggtg ctaggagttc
    38941 tgtcggatag ctttgtaaat gatgtgacat ttaaagtgtc cgttccaacg gaatcagtgg
    39001 tcgttagtta cgataaacac ggtgtcggca ttaacaaagt tagagagcgt ggggcggttg
    39061 atgtaaaggg tgatatatat gcgaacgata aaccgataca gcagcataag ttgaccgaaa
    39121 ataacggtgt tgcaattatt gcaacgggtg actggaacaa ttataaagaa acaggacttt
    39181 accgtggcag taatctggcc aaccaaccgc caaccgctgt tggagcgcac aattggaaat
    39241 atgtccgtgt caccaagcat gatgctggtt ggtctttgca agaagcgatt gattttaatg
    39301 gtgtgatgag ttgtttcaga gtttgggcga ataatgcttg gaaaccttgg cagagagtag
    39361 ctttagtcca accctcgaca tggatttcta ctggagtgaa tggtgtccat tacaagcaag
    39421 aaggggctgt ggtagcgctt aggataaaag tatcaagtac atcatttgtg tctaattatt
    39481 ctttgggaac cattccgact tctcttttac cagtcgcagg cacagatgcg gtgttccgtg
    39541 ttgttacaaa taacggtact gaccgcattg tgagaattaa gtcgacgggc atttgccaaa
    39601 tcgagtctta tcttttaaat gaatctctca ctacaacaat aacttggtta atttaaagga
    39661 ggttaacgtg gactttttat ttttacaaaa atcgttagaa tatcattctg acggctcacc
    39721 taaacaaact aagctcattt tgacggatga ggtaggttca caattcatct gccatttgcc
    39781 tgcagatgct atcaacaaat caaatgatga gttggtgcaa gaaggtgcgg atgatattta
    39841 caatcgtttc ttccctaaac gggcagagaa tgaacgattt acatctattg aggattggct
    39901 acggtctgcc gaaacagaac gtaatgagcg gtttgtgaag ttagaagctg atatgcaaga
    39961 taagattgat gatgcagtcg cggaattaac tattatgttt actggttttg caggtcaatt
    40021 tggagcagaa gcggtagagg atgttccaaa agacacgact cctcacgatg ttgaggtaga
    40081 aattgaggaa tagatcatgg gatttattaa tacaattttg acaggaatta gtttaatcaa
    40141 gaaaggacaa tttactatga aatttacaaa gaaacatgtt gttgcacaag cttggtaccg
    40201 ccgtgtggct ggtgggattg ccacttttga ggaggttcca aagctatgga atttgcgtga
    40261 agtggtcaag gaaatgctgg atgagcttgc gccagaagat gggaaatagc ctatgccaga
    40321 caatatttta aacatcatcg gagcggtggc acctactatt ggtgtcatcg caactggtgg
    40381 ctttggctac cttgcggcac ggtctaacaa cctcaataag acccagtttg gcgaactcaa
    40441 gcagggtatg gaggatattg atggtcgctt gacaaccttg cagaatgtag ctgacgacaa
    40501 ccagagtaac ttaaaagctg taaaaagcga tgtggacaat ctcaagaaca gcagtcgcag
    40561 tagtcgccgc tataccttat acaaggactt ggacacagct atcgaacgtg gttggacaac
    40621 acttgaagag cggagggaga ttgccaaact ctttgatagt tacaagattt tgggtggtaa
    40681 tggcgagatt gaaaccatgt atcaaatcta tattcaattg cctatgaagg aggggtagaa
    40741 atatgcataa aatcaactgg ggcgtacgct tacgcaataa gacattttgg tggaccttgg
    40801 tgccgttggt ggtgttattg gcgcaacaat taggctttaa ctgggtaccc aaggattggg
    40861 aatcgacctt tgcgacgata atgtctatct tgactgttgt tggtattatc aatgacccga
    40921 caaccaacgg gattgcggat agtgagcaag ctttgcgcta ttatgagcct aaggtggaca
    40981 gacatggaaa agcttaaatt agtcatctgt gtatctgcct tggtagtact agcgcccatt
    41041 gcttttgtgc ttagtccatt tttagataga aaggatgtag gaaatgacaa cagcgaatga
    41101 agccgtcatg ttcgtcactg acctggccaa tcgtggtgca ggcgtgaact atgacggggc
    41161 atatggcatg caatgtgtgg atttgccgaa ttggatttgc ggaaaattct ttggcaaacc
    41221 cttatggggc aatgctattg atttgttgga ttcggctgaa caagttggtt tcgaggtgca
    41281 tcggttgccg acatcagccc gtccaagacc tggcgcagtc tttgtcaaag attatgtggc
    41341 aggggatggg gtcaattatg ggcatactgg tattgttatc ggcgtggatg gggatattgc
    41401 ccagaccgta gaacaaaact tggcaggcaa tctctatgtt ggcagccctg cccagtatgc
    41461 tagtcaacga attagccaat tggtgggttg gttttatcca ccgtatgaag cagaagtaga
    41521 acaaccagaa gaaaagaaag tagaggaaca agatatgttt acaatttcag caccaggccg
    41581 tggaatcgca ttagttgcag gcggtacatt ttacgctttg cttgacgcaa aagaccctgt
    41641 cgcattttgg gacaagggtg taccacatat gcaaatctcc caagcgactt ttgataattt
    41701 ccaacacaag tcaaatctag accgcttgga tgacgagaca gttaacaaac taatcaaagg
    41761 tctaaaataa tttcagccta gcgtttgctg gggattatgt tgtgaaaagg aatgtggtat
    41821 aataaagatt atgaaataca atgtaaaaat cagtcagaaa atcaaggaaa tagtagggtt
    41881 agaaacttct gcaactgata ttctgatcca tgaagaaaat cttgaaaaac atatgttaaa
    41941 aagcagacac cgaaagatga tcaaatatat cccagatgtt gctgatattt tgaatgtacc
    42001 agactatata ggtcaaaaca agaacgtcga atcagagagt tttgaagtta tcaaagtcct
    42061 tgcagataat gttctggtcg ctgtcaaact agataagaaa aacgactatt tctttgtggc
    42121 ttcggtttat gacatcacag attccaaatt aaatcacatg aagagaaacg gtcgcatcaa
    42181 agcatttgac aaaatagaag ataagtagta aactaaatac aatgaatgat aacgaggtca
    42241 gaaaggctcc tgacgcactc gagagagtac ctgagatgtt ggatacgccg cccaaccgct
    42301 atcattgtat ttcaaaaacc ctcagcgttt gctgggggct tttttgttgt caaaaataca
    42361 gtaaaataca gtagcctatt cgttcaaaat cgccattttg tcaataatgg ttgcgagatt
    42421 tgatttctat ttgctcaaaa tgggcaaaat gacaaaaacg aaaaacattt gtaaaaaata
    42481 cgtgtctata gttgacaagt gttaaaaaca agtatacaat ataattaaag ataaggaaag
    42541 gagataagcc aatgacagag cgagagctta agaagattgc taagaagcaa ggctttagta
    42601 aaactgactt tgggaaaggg tctcacgagg tttggaaaca tccagacgga cggacagtga
    42661 cgatacctaa accaaaagaa aaggattaca gaccaggcac actaagcaac attctcaaag
    42721 tcttgtatgg ggagtgaggg cactcctccc tgtacctcta aaggggttac tctgatcatt
    42781 ggcttaatct atca
//
LOCUS       DASGAC010000003        39259 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.003, whole genome shotgun sequence.
ACCESSION   DASGAC010000003 DASGAC010000000
VERSION     DASGAC010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 39259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39259
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.003"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(54..794)
                     /locus_tag="U1335_000129"
     CDS             complement(54..794)
                     /locus_tag="U1335_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HEM5230650.1"
                     /translation="MKKEFFVVGDVHGKFELLLDILKKWNENRQQLIFLGDLIDRGEN
                     SKACLELVWQLVREKGAICLTGNHERMFLAWLRDPIDRYDHYRRNGGDTTINSFLGRP
                     LDAPVDGLVDANAVMEQYGDLIDFVKSCPYHIETERYIFVHAGVDLTLPDWRETSNHD
                     KVWLRTPFHEAENTTGKMIVFGHTPVYNLYQTKLRISQIWTSPDGKMGIDGGAVYGGV
                     LHGIVLDDTGLVQDYIVGAVNPRKEIED"
     gene            complement(1111..2460)
                     /locus_tag="U1335_000130"
     CDS             complement(1111..2460)
                     /locus_tag="U1335_000130"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017648691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEM5230651.1"
                     /translation="MTHITFDYSKVLGQFVGAQEVDYMQPQVTLADQMLRQGTGPGND
                     FIGWLDLPENYDKEEFARIKEAAAKIQNESEVLVVIGIGGSYLGAKAAIDFLSNAFVN
                     LQTREERKAPQILYAGNSISSSYLADLVDYVADKDFSVNVISKSGTTTEPAIAFRVFK
                     ELLVKKYGQEEANKRIYATTDKARGAVKVEADANGWETFVVPDDVGGRFSVLTAVGLL
                     PIAAAGADIDALMEGANAARKTYTSDKIAENEAYQYAAVRNILYRKGYVTEILANYEP
                     SLQYFSEWWKQLAGESEGKDQKGINPTSANFSTDLHSLGQFIQEGNRNIFETVVRVDK
                     PRKNILIPDMAEDLDGLGYLQGKDVDFVNKKATDGVLLAHTDGGVPNMFVTLPQQDEF
                     TLGYTFYFFELAIAISGYLNAINPFDQPGVEAYKKNMFALLGKPGFEELGAELNARL"
     gene            complement(2542..3084)
                     /locus_tag="U1335_000131"
     CDS             complement(2542..3084)
                     /locus_tag="U1335_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230652.1"
                     /translation="MFIFAFPGMGKTTLAKQSSQIVDLEMSDIKYDNSSVRHLNKEER
                     KSTPRPIKDKNYKNIYVDKAYALHEEGKTVLVAMNFLVRMLLVMLVRGAVPFHIYIPH
                     PSLKEEYRQRYTQRGNNSKFIFEVMTIWYVSLVPLYILSKILPNMITVTQSGQVLADY
                     KTPHYDTMFVKNKQVTQTIS"
     gene            complement(3302..3391)
                     /gene="ffs"
                     /locus_tag="U1335_000132"
     ncRNA           complement(3302..3391)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="U1335_000132"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            complement(3434..3955)
                     /gene="tadA"
                     /locus_tag="U1335_000133"
     CDS             complement(3434..3955)
                     /gene="tadA"
                     /locus_tag="U1335_000133"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HEM5230653.1"
                     /translation="MNYTQEEKEYFMNQALAEAKKSLEKDEIPIGCVIVKDGEIIGRG
                     HNAREELNQAIMHAEVMAIQEANRLEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPQV
                     VYGAANQKFGAAGSLYDILTDERLNHRVAVETGILEEDCAQIMQDFFRQRREKQKAEK
                     EALRAQHGTISDS"
     gene            complement(4007..5977)
                     /gene="tkt"
                     /locus_tag="U1335_000134"
     CDS             complement(4007..5977)
                     /gene="tkt"
                     /locus_tag="U1335_000134"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEM5230654.1"
                     /translation="MSQLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYSLFTKELR
                     INPDQPNWINRDRFILSAGHGSMLLYGLLHLSGFEDVSMDEIKNFRQWGSKTPGHPEF
                     GHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNRDGFPIFDHYTYVICGDGDLMEG
                     VSAEAASYAGLQKLEKLIVLYDSNDINLDGETKDSFTEDVRARYNAYGWHTDLVTDGT
                     DVDAIFAAIEKAKAAGKPSLIEIKTVIGHGSPNKQGTNAVHGAPLGAEEAEATRKALD
                     WNYAPFEIPAEVYADFKANVADRGAAAYDAWVKLVEDYKQAHPELAAEVSAILEGRDV
                     VEIKPEDFPVYENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQ
                     DSVNPLNRNIQFGVREFAMGTILNGMAAHGGLRVYGGTFFVFSDYVKAAVRLSALQGL
                     PVTYVFTHDSIAVGEDGPTHEPIEHLAGLRAMPNLNVFRPADARETQAAWYLSLTSKS
                     TPSALVLTRQNLTVEEGTDFDKVAKGAYVVYEAAGFDTILLASGSEVNLAVKAAKELE
                     AAGTKVRVVSVPSTELFDAQDAAYKEEILPNAIRRRLAIEMGATQSWYKYVGLDGKVL
                     GIDTFGASAPAQTVIDNYGFTVENVVKLVGEL"
     gene            complement(6115..12408)
                     /locus_tag="U1335_000135"
     CDS             complement(6115..12408)
                     /locus_tag="U1335_000135"
                     /EC_number="3.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pullulanase"
                     /protein_id="HEM5230655.1"
                     /translation="MKKKSVQNMKRTGMLEKKQIFGIRKLNVGVASVGIAAALFLSGA
                     GQLVQAEEVVLPASTSSTTLSEQDGGVVEATTTAIETTDSMVAEATAVTETADTIASE
                     EAPIEEGSIRLHFENVDETAPESQGLWTWGGVAEPSDSNQWPTDTANFSSSQVDDYGH
                     YVDIKKSETPGTIGYLVLKNGEKITESDQKVELLVPEQNEAWIASDYSVSSYEPLKDE
                     NVLRINYTREDNNYEGWGVWTWGDTTEASSDWPTGAVDFKLGKYGAYVDIPLSNGLDS
                     KLGFLLINQNNPDLAGNKTIDLAFADRKRHSQIFLRNDDDKVYTNPYFIEEKVELDTS
                     KATPGTKNVTLEASSKAPFNYNESGLVSVTVTNPENAEIVKMEVDTSAIGGGLVPIST
                     ELNRVTIKATSSTAPGTYSLPVKVYDKDNGYYETSLDVTITERTKADGEKDWDEQVIY
                     FMMTDRFYNGDTSNDKLVEGTASNPRGLYQGGDFKGVTAKLDYLKELGVDSIWLTPIV
                     ENIPQNVGSATDGEYYAYHGYWASNFEKLNPHLGSLADFHELIDAAAEKGINIVVDVV
                     LNHAGYGTEETFAGMVRTKEEDKQGDDQLGSLSGLPDFKTEEAAVRNQLVAWQASWLE
                     RSTTAKGNSIYAFRVDTVKHVDDTTWQHFKNELVDRDPDFHLIGETWGANYKDTKGDL
                     GIGTMDSLLDFGFKDIAKYLVNGQLKAAGKELEERSKVLTSAASLGQFLGSHDEDGFL
                     YSLGGAEKEGNLDKLKLAASLLITAKGQPVIYYGEEVGQSGQNNWPVYDNRYDFDWSK
                     VETSDITDHYQKLLAFRNANSTLLSRGDTSTLAGNDSQGWLISKRSYQEQAAYLVFST
                     NTESKEMALEVSGQDVVVTDAYTGKSYQAIEKDGKWVVQVELPTIAQGGTMLLQTEAG
                     DIVNASVQGATEEPIEAGYFRVHFKTLPSDNLSSLGLWTWDDVEKPSSEVGAWPTGAT
                     NFSTAKQDDYGYYLDIKMKDETASKISLLINNTSGENITGDKTIERISTKMNEAWFDE
                     NYQLSLYQPLKEGYIRINYFRTDGNYDQKGLWIWGDVTDLTLGDWPNGIDFENQGKYG
                     AYIDVKLTDLPSSIGFLLLDESKSGDDVKIQQKDYSFKDLKNQTQIFLKDDDPTIYTN
                     PYFVNNVRVTGVSHVSLTALEAAFTTLEGADKDSILEKLSVTDKNGQTVAVTDLVLDL
                     TSNKVRVLGDFNQENAGYTLKYGNDSFTTTMSWQLKDELYAYDGELGARVSQAGSVVD
                     MTLWSPSADNVAVVLYDKDDQSKVIGKLAMTKGDKGQWDLELNSQSGLGIADYRGYYY
                     HYEITRGDQSVLVLDPYAKSLAEWNSDVADTDPSYRIAKAAIVDPAEVGPSDLNYATI
                     PNFNQREDAIIYEAHVRDFTSDPAISDELTAQFGTFAAFAERLSYLKDLGVTHIQLLP
                     VMSYYYVNELKNAERMSEYASSNSNYNWGYDPQSYFAFTGMYSTDPTDPMKRIEEFKN
                     LVNEIHKQGMGVILDVVYNHTSKTFLFEDLEPNYYHFMEADGTAKSSFGGGRLGTTHY
                     MSRRVLVDSIKYLVDEFKVDGFRFDMMGDHDAEAIELAFTEAQKLNPNIIMLGEGWRT
                     FTGDANQPVQPADQDWMSSTDTVAVFSDEIRNTLKSGYPNEGQPAFITGGAKSVESVF
                     NNIKAQPGNFLADDPGDVIQYIAAHDNLTLFDIIAQSIKKDPSIAENYTEIHQRQRLG
                     NLLVLTAQGTPFIHSGQEYGRTKQFRHPDYKEPVTEDKVPNKAHLLTNADGTPFDYPY
                     YIHDSYDSSDAINKFDWTKATDEVLYPENTRTQAFTKGLIALRKSTDAFRLGTKDQVD
                     QMVSLISIPGQNGIATNDVVIAYQTIASNGDRYAVFVNADSKERSFVLSDSYKELLKG
                     QVLVDGKRAGIAALTDLVGVTLTDDAVVLAPLTATVIRLSDIITEVPTAEEKPSLDFT
                     TKERTEETVLPIVEEVRYDATLAKGQSYVLQEGKTGKKVQVYQDVLIDGKVVATHLLS
                     ETVVDSETRIVVKGSMDAKKEAEKPSLSTTAQASRQATSGASKASLPITGDRQSDLAL
                     LGLGLAGLGLTVAAQGRTKKSEE"
     gene            complement(12697..13638)
                     /locus_tag="U1335_000136"
     CDS             complement(12697..13638)
                     /locus_tag="U1335_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5230656.1"
                     /translation="MTTLADVARLANVSKMTVSRVINHPEQVTQELRTLVTAAMEELN
                     YKPNVAAKALAQQRTLIVQAVILEKMDVVEPYYIDLLAGIADELNHRNYTLQLVTNPS
                     QITDQCDGYIVTGARKDDYPWLKGLRKPLILFGENQEGLPFVDSDNHLATRSATQFAL
                     SKGYERIVFVGIDLPEAFEKGREEGYKDAMQGRETHLYRLENRSRVAEEFVKNLDYLP
                     ENTCFICASDRLALGVTRGLQALGKSIPNDVGVIGFDGFFLDRMSRPALTTMKQPIRQ
                     MGALSVKHLMTILDGKPLARQGHYCQATLIERETTPQ"
     gene            complement(13909..15750)
                     /locus_tag="U1335_000137"
     CDS             complement(13909..15750)
                     /locus_tag="U1335_000137"
                     /inference="COORDINATES: protein motif:HMM:NF012948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5230657.1"
                     /translation="MKEHCKHRQLAKWTKLGIGLAAFTVLGGLVVPEGLEGLEPIVVQ
                     AEEQASRSLTVYYRLKTGENDGDEERLQEVTYQLKPGETIDIRQAYPDYQFVSSESGQ
                     TVYHYDDLNATFAIYDSVTYQRKDYKPLSDTLPSLSYTVRYVVETETGLQDIAAPKTQ
                     ELKGGSFEFVSGPEIDGYYRLISFSELIRYEDIQSGQKEVLIYYKPIEAAPLIYQVTL
                     VHAVTGQILETSQKEILEGRSPDLATFIPEGYTSTKYGSGNLSYDEVKAGKTSVTILC
                     VPFAEEAIGVPIEYRTQDGVLEEAYLTVSPGENLVVKAKEFAGYELVPGTASERTISY
                     AHAKSFMSSMGILVDGLGFQYQKIGSPFKDNAPVHSMTDKEAKALYDQTVLLKDTLLK
                     VVQLDESLYTEESRKEITYMLTLVDLYNDLLTGKVELKTQIGSIPPPEALFNIYRTDI
                     KRIENGMAALVLKDKENAEQPTPPSTGSETDTPTQSGGGATTDTPSEPTAPALPSDTH
                     GSASSNQVTDKSTTNSSSGQGTGGSGAVLTNKTSKATDVASAPILQTKKTVSETQPPS
                     NQTKTSETQKALPATGEAHPSFSLVGLGLIGLSSLLISRRRTDRLSQ"
     gene            complement(15936..16172)
                     /locus_tag="U1335_000138"
     CDS             complement(15936..16172)
                     /locus_tag="U1335_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5230658.1"
                     /translation="MDPELIGEVLAVMIQLAKEGMTMVIVTHEMGFARAVADRVIFMD
                     GGRIVEEGRPEDIFDRRPEERTKQFLARIQKENV"
     gene            complement(16227..16805)
                     /locus_tag="U1335_000139"
     CDS             complement(16227..16805)
                     /locus_tag="U1335_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HEM5230659.1"
                     /translation="MSYQMIKKQFKLGLFTALIGNLLWFGMVNVSADDTVISDSPTVS
                     ALTKKVEAAKKAAKAAAAAKAALATNMVSEVAVEYTANTYPAGQCTWGAKEMAPWVGN
                     YWGNGGDWAASATALGYEVGTIPKVGAIAVWTDGGYGHVAYVTDVAANGHIQVKESNY
                     GGVYYPSNVRGFFDPTTTSEGTVSYIYPPAGV"
     gene            complement(17131..18507)
                     /locus_tag="U1335_000140"
     CDS             complement(17131..18507)
                     /locus_tag="U1335_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM5230660.1"
                     /translation="MSNISEKFMEISGKIGSQRHLIAIRDSFISMMPITMAGTVAVLL
                     NVFLRDIPNNMGWTGFAEAMQPIININGYVYFGTIGIMALVFAFTFGYNLSLMYKVNP
                     LAGGLISFASFISTIPQSLTISTALEGVDKSVITALEELGLTIVTTDGVSALETSQWG
                     AIALKYGGATGLFTAMFIGFLATFVYASLVKRNIIIKLPDTVPPAVNKAFAAIIPGTA
                     AIYASSIVAYLVFSVSGQSLSDVVSTYIQMPLLGLSQGLGSVILLTFLVQLFWFFGLH
                     GHNVLAPIMDGIYGIALNENTAVYEATRSVADLPWLWTRGSFDAYAQMGGSGVTLALI
                     IAIFIFSKREEYKMVAKLSAPMGVFNINEPITFGIPMVLNPLFVIPWLIVPPICAAIA
                     YLATAAGLIPPVFLAVPWITPPGLYAYLATGGNIMAALVSLFNLFIAFLIWTPFVIAA
                     NKVKAGED"
     gene            complement(18551..18994)
                     /locus_tag="U1335_000141"
     CDS             complement(18551..18994)
                     /locus_tag="U1335_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3284 domain-containing protein"
                     /protein_id="HEM5230661.1"
                     /translation="MKIKKIGQVPIEQLFAAIGRSLKEDYQQNTGRPLLDQDIQEGLT
                     YVKTFGDKGEHSVKVRVEEFLAPYRYAVCFHSNRGKEHICYDLHALEDNQTEIEYSYE
                     MEAADLFMRGNYFLMEKIFSKSLKRQTDAQLEALIRYSKEGASTS"
     gene            complement(19031..19363)
                     /locus_tag="U1335_000142"
     CDS             complement(19031..19363)
                     /locus_tag="U1335_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM5230662.1"
                     /translation="MNSPEYLEAIMGLIMYGGEAKGYAVQAIQAAKQEDFQTAEHLLQ
                     EANTSLNIAHKSQTGLLAQEAGGQTVEVTLLMVHGQDHLMNALTFIDMAKEVVELYKR
                     LAEQKNCG"
     gene            complement(19365..19676)
                     /locus_tag="U1335_000143"
     CDS             complement(19365..19676)
                     /locus_tag="U1335_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010922394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM5230663.1"
                     /translation="MKQIMLVCNAGMSTSMLVTKMQKAAEEKGIEATIWAVPVSEADS
                     EVSQKEIDVLLLGPQVKFLLNDYKAKFEPAIKVDAINMMDYGVMNGAKVLDAALALME
                     D"
     gene            complement(19689..21683)
                     /locus_tag="U1335_000144"
     CDS             complement(19689..21683)
                     /locus_tag="U1335_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM5230664.1"
                     /translation="MLSKKEVRLADYLLTKQGDFVSSIELAKALGVSDRTARKYVQQL
                     SLSLEASGASILSKQSKGYCLLVERPVEFEMFWQEQLRLKKQVTDLRQLEEATDRQRY
                     VLSKLLFENPIQSMDRLQRELFIGKTTLHSIIADIRNLFAPYQLELLFTRRGVELSGE
                     EPAIRHFIMDYFFGQGNGQSLYGLVESQLLPDIRFTDLMLIVLDECRDAKLRLSDFVM
                     QNLVLHIALLLQRMKGGASLERFPISDQIQSSKEYQVAGRIIERIETEFQVAIPVEEA
                     NYIALHLKVKLTGNPSQLSDLEDGLEEEVETCLQTLSQLTGLDLVKDRQLFKGIVAHL
                     LPLRTRLEHQIQLANPLVADIHRDYIEVFELTKQAFASMPTLLAYSISDDEWAYLTLH
                     VLAAIERYEGRKKLRVLVVCATGIGSALMLRNRLEKEFATSLEIADVVSYYEVTEERL
                     RDVDLIISSISLSNLIFLTPVITVSVFLSEQDIEAIRSYLQQVTPVRVEQNEALPMEE
                     EQARQIAEAVFSPLRIVSLDKKMSRDRTLLQLIACLDEAKESGFVEQFREQVNVRESY
                     SSVVFGELLAFPHPAIPLTFSEQIVVGVCKEAVEWEEGKKVQFVFLLSPSKGRNPHLK
                     YISPCLVEFVQDRSLQERLVQNPSYQELVDIFIPLIQKQG"
     gene            complement(21818..22927)
                     /locus_tag="U1335_000145"
     CDS             complement(21818..22927)
                     /locus_tag="U1335_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF871 domain-containing protein"
                     /protein_id="HEM5230665.1"
                     /translation="MVQFGFSIYPENYSLEESKAYIDLLGRYGARRMFMSLLQLGGDA
                     QETLQLYRDLIAYARQLGIVVIADLSPSFIEAQGWQKSLIEEAHGLGLTGIRLDEALP
                     LEEIVSLTQNPYGLKIELNLSTDKVLLTQLLASEANRDNIVACHNFYPHAYTGLSEEH
                     FLEMSSFYHQEGIQTAAFVTAQSATEGPWSLSEGLPTLEEHRNQTLPLQIAWLKATGL
                     IDCILISNQFISEEELQSIQSILEEEDICLPVELTGQVTAVEREIIEFDHVYRGDISA
                     YLLRSTMPRIVYKNAAIPAHTDREILVQRGDVLIDNDLYGRYKGELQIALREFTVSSK
                     VNRVGRICPDYLPLLTFIKPWQSFRLRIVASDSFH"
     gene            complement(22936..24336)
                     /locus_tag="U1335_000146"
     CDS             complement(22936..24336)
                     /locus_tag="U1335_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM5230666.1"
                     /translation="MTEDKVVYHFPEGFLWGTSTSGPQSEGTELGDGKGQNNWDYWYS
                     IEPERFHGKVGPERTSTFYKNFKKDIELLVETGHTVFRTSIQWSRLFPKGVGEVNQEA
                     VTFYRSVFSLIKEKGIQLFVNLYHFDLPYALQEQGGWENKDIVWAYEAYARTCFELFD
                     DLVDRWITFNEPIVPVECGYLGDYHYPCKVDAKAAVAVAYHTQLASSLAVKACHEVNL
                     EKKIAIVLNLTPAYPRSEHPDDVKAAKIAELFQTKSFLDPSVLGEYPRDLVDLIEEYG
                     LSPETSEEELAIIRENRVDFLGVNYYQPLRVQAPTKLWKEGEVLTPEHFFAPYDMPGK
                     KINPHRGWEIYEKGIYDIAINIRDQYNNIEWLVTENGMGVEGEAAFRQDEVIQDDYRI
                     EFIEDHLIELHRAIEEGANCKGYMLWTFIDCWSWLNAYKNRYGLVELDLETQERRIKK
                     SGRWFKALSDANGFSR"
     gene            complement(24323..25711)
                     /locus_tag="U1335_000147"
     CDS             complement(24323..25711)
                     /locus_tag="U1335_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM5230667.1"
                     /translation="MNKKGEQVVKSIKLVTLGGGSSYTPELVEGMILRHQQLPIREWW
                     FVDVEAGAEKQKIVVDLARRMVRKAGLDWKTEETLDRRAALKGADFVTSQFRVGQLQA
                     RYIDETIPLSHGLLGQETNGAGGIFKAFRTIEAYKGIIADMKELCPDAWLINFTNPAG
                     IVTEAIVNELQWNRVIGLCNIPIGQKKTAAQLLNLPEESIQTNHVGLNHFHFHEVWDQ
                     TGQNRTGEVMEALYGDSRGNQEVVKNITNLDFSFPFLQSIGLLPCDYHRYYFLEKEML
                     ADTLDQYRQGKVRAQVVQEVEEELFELYRDSNLDHKPKQLEQRGGAYYSDVACQLICA
                     IYNDSKEIMTVSTVNRGVISYLPEDCVVEVSSVITAQGALPLVCPKTPMVVRGYLQQM
                     KQMELATVGAAMTGDYALALQAFALNPLIPNGELAERVLQELLVAHEAYLPQFRSVID
                     QIKKKGIGYDRG"
     gene            complement(25995..28496)
                     /locus_tag="U1335_000148"
     CDS             complement(25995..28496)
                     /locus_tag="U1335_000148"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014639013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEM5230668.1"
                     /translation="MSFYNHKEIEPKWQEFWAKNHTFKTGTDADKPNFYALDMFPYPS
                     GAGLHVGHPEGYTATDILSRYKRAQGYNVLHPMGWDAFGLPAEQYAMDTGNDPADFTA
                     ENIANFKRQINALGFSYDWDREVNTTDPNYYKWTQWIFTKLYEKGLAYEAEVPVNWVE
                     ELGTAIANEEVLPDGTSERGGYPVVRKPMRQWMLKITAYAERLLNDLEEVDWPESIKD
                     MQRNWIGKSTGANVTFKIKDTDKDFTVFTTRPDTLFGATYAVLAPEHDLVDSITSAEQ
                     AEAVAEYKRQASLKSDLARTDLAKDKTGVWTGAYAINPVNNKEIPIWIADYVLASYGT
                     GAIMAVPAHDERDWEFAKQFGLDIIPVLEGGNVEEAPYTEDGAHINSDFLDGLNKEEA
                     IAQMVAWLEENGVGQEKISYRLRDWLFSRQRYWGEPIPIIHWEDGTSTAVPENELPLV
                     LPKTSDIKPSGTGESPLANLTDWLEVVREDGVRGRRETNTMPQWAGSSWYYLRYIDPH
                     NDEKLADEELLKAWLPVDIYIGGAEHAVLHLLYARFWHKFLYDLGVVPTKEPFQKLFN
                     QGMILGTSYRDSRGALVATDKVEKRDGSFFNIETGEELEQAPAKMSKSLKNVVNPDDV
                     VEQFGADTLRVYEMFMGPLDASIAWSEEGLEGSRKFLDRVYRLITTKEISSENSGALD
                     KVYNETVKTVTEHIEDLKFNTAIAQLMIFVNAANKEDKLYVEYAKGFVQLIAPFAPHL
                     AEELWQGLEATGQSISYVAWPTYDESKLVESEVEIVVQIKGKVKARLTVAKDLAPAEL
                     EKVALADEKVQAEIAGQTVVKVIVVANKLVNIVTK"
     gene            complement(28675..29564)
                     /locus_tag="U1335_000149"
                     /pseudo
     CDS             complement(28675..29564)
                     /locus_tag="U1335_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000564846.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ISAs1 family transposase"
     gene            complement(29669..31297)
                     /locus_tag="U1335_000150"
     CDS             complement(29669..31297)
                     /locus_tag="U1335_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018166495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HEM5230669.1"
                     /translation="MITTYKRLIKEYALYVLLSKYLFAVLLSIMGFKNHKDWTYILVT
                     MLEVTSIATFSNLLLKEKKLTAYIANSLLLLIVNVQNSVLFFGGSFTTLVMVTNLESL
                     ESLSGRFASILFGIICILIFTFLPITYLRAEKIKCSTVLSSSLLVELIVTLMSGNIYS
                     PIFGVYQLAADAYEYQQDLAKIANAPNVTDYFYRNTIQNARPKPDSLSATPNVVLIFV
                     EGLSQNIVEDEREIMPNLKKFQESSLTFENYYNHTFATYRGLIGQLYSGYQLDNYESN
                     TLTSLQGVLGDKGYQTTFINTEPNNTQFTSYLESFNFDTIVNENDLAEGPNGSLTDQA
                     ALELLYDTIENQVSKKTPFLTAIYTYGTHMTFDSADKMFEDGKNILFNRFYNFDYYFS
                     QFLEKFTSNPAFDNTILVFTADHATFADKDFKAAYPSYNRENQDVDRVPFIVYHKGIG
                     AEQKDVEGRNSLDLVPTLLDYMDISEPNYFLGESLFYYKENNNSFDTVFFDNAYLLST
                     DYGNIQPLSETNEETVKALLQKYFAAKQQKPNIP"
     gene            complement(31534..31761)
                     /locus_tag="U1335_000151"
     CDS             complement(31534..31761)
                     /locus_tag="U1335_000151"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230670.1"
                     /translation="MFDVRLSQEGESGELVLPRIWYKGYVAEYSAGVKGTQPVIAYVP
                     LSKTELQQYKEKHKPNVTQKALYDGRATICD"
     gene            complement(31880..32242)
                     /locus_tag="U1335_000152"
     CDS             complement(31880..32242)
                     /locus_tag="U1335_000152"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230671.1"
                     /translation="MSRYLLLTSTILLVSTSDILPWFTALRYTFLAVFQYTGRLAYFL
                     PAFVLTALFLAEKKRLYKVVSVVQIGFYLVTNPLSFLPQVATFKEKYNLTATNHTVMK
                     RYNEMADKAFHNNLLSIG"
     gene            complement(32647..33231)
                     /locus_tag="U1335_000153"
     CDS             complement(32647..33231)
                     /locus_tag="U1335_000153"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230672.1"
                     /translation="MNTKELSQTRQNIFCRNPYLTLFVYALLIAVISYISINTNSPIY
                     DYPFHMARIVGLAQSIANGDVLLSLNFLFTHGSGYAVPMFYGNGILYILALVYLLTKV
                     GTHAFASYAFIIMWATATTSYFSLCKMTQNKTKSLWYGMTMSVVFPYFGFGMSAISPL
                     IAPLIYCIYKVVFQDKYNPVPLGIIIALMVQTHN"
     gene            complement(33249..35003)
                     /locus_tag="U1335_000154"
     CDS             complement(33249..35003)
                     /locus_tag="U1335_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-Rha alpha-1,3-L-rhamnosyltransferase"
                     /protein_id="HEM5230673.1"
                     /translation="MKRLLLYVHFNKYGQLSSHVQYQLEAMRPLFSKIVFISNSPFSA
                     EDETVLRQSYLVDEVIRRENIGFDFAAWRDGMTSIGFEELKHYDSLTLMNDTCFGPLW
                     DMSELYQRYEVDETVDFWGMTNFRETKQFREHIQSYYLTFSNKVVQSAAFQEFWKSVQ
                     NFTNVQDVIDHYETQVTTNLLEAGFRYQAVFNTVEEDTSGMLHPDFSYYNPTAILKHR
                     VPFIKVKTIDGNQHITPYILQEIAEKSDYPVDLIVSHMSKINLPDFKYLLAQKYLKST
                     QNPYSNDGRIAIHLHVFYVDILQEFLTAFDSFNFSYDLFITTDQENKVAEIEALLSEN
                     GSQAQIFVTGNIGRDVLPMLKLKEQLQTYTYVGHFHTKKSKEADFWAGESWRKELIAM
                     LVEPANDILANLEQQSDLGLVIADIPTFFRYNKIVDAYNENRIAPAMNELWQKMGMQK
                     QIDFNALHTFVMSYGTYVWFKYDALQALFDLNLTDADVPAEPLPQNSILHAIERLLVY
                     IAWDKNYDFRIVKNPNDLTAFIDNKLLNERADALPHTYVNFDHIGGIKGALKYIVIGP
                     LRAIRYIIQRMLAKRVGK"
     gene            complement(35000..36409)
                     /locus_tag="U1335_000155"
     CDS             complement(35000..36409)
                     /locus_tag="U1335_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006596037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM5230674.1"
                     /translation="MMGQPTVSIICTVYNKAPWLERVIEGFLAQETNFEVEIILVDDY
                     STDSSRDIILSYQKQYPEKIQMILNEENQGISRTWVSACLQAKGKYIARCDGDDFWLD
                     PHKLQKQVDLLEGHPEAKWSNTDFDIYDEDGQLVSRAGFASGSIPLADTYAKMLATRG
                     FTMASTWLVERELMLEVNQELDLTTADDTFNLQLDLFQRTQLLFLPEATVAYTINQGS
                     DSRPVDFAKIENRFQTLLETQKFYLDKYPASHYREMIDILLERNNTYELVLTKKERGL
                     AQVGIQEVTIYFDKEGSEFCQENTLRYPLLKHDELRFSLPDNCQRVRIDLSEQPSFYS
                     NVSLLSQKNQTSLLPVYTNGILVGDMVLFPQQDPQLIYEISSFYGTEFTLKYSACELD
                     DLQSPDYVAKVLGEQLVELQEKALEGERIEQQFRETEVLLNQQQKEIEKLTAMYNSVV
                     GSRRWIIPTKIINFFRRKQ"
     gene            complement(36421..37659)
                     /locus_tag="U1335_000156"
     CDS             complement(36421..37659)
                     /locus_tag="U1335_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5230675.1"
                     /translation="MTENNIAVKVDHVSKFFKLPTEATQSLRTTMVNRFRGIKGYKEQ
                     HVLKDISFEVEKGDFFGILGRNGSGKSTLLKIISQIYVPEHGTVTVNGKLVSFIELGV
                     GFNPELTGRENVYLNGALLGFSREEIDAMYDDIVDFAELREFMNQKLKNYSSGMQVRL
                     AFSVAIKAQGDVLILDEVLAVGDEAFQRKCNDYFQERKKSGKTTILVTHDMGAVKKYC
                     NKAVLIEHGLVKAIGNPENVANQYSFDNTITVQQENLEEAKGVDSESAEAKEVQLVEN
                     FKLDLLSPKQISPKDAIHFKMEYTVLQDIETYMALSLTDIDRNIWIYNDNSMNQLQTG
                     KGKKVVHYSCSLPNVNDLKLKLEVTVRDKDGKMLAFSDATQTPIIMVNRTDIAPDDFS
                     ALDSASGLIQRNGSWTFTNN"
     gene            complement(37659..38462)
                     /locus_tag="U1335_000157"
     CDS             complement(37659..38462)
                     /locus_tag="U1335_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019802672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5230676.1"
                     /translation="MDLFSTKNRILLKELIKTDFKLRYQGSVIGYLWSILKPLMLFAI
                     MYVVFIHFLRLGSDVPHFPVALLLGNVIWSFFSEATNMGMVSIVTRGDLLRKLNFSKE
                     IIVLSSVFGAAINFSINLLVVLIFSLFNGVQFTWSVVMALPLFVELFLLATGIALILS
                     TLFVRFRDLAQIWEVVMQAGMYATPIIYSLSFVMNQSVLAAKLIMLNPMAQIIQDMRY
                     FVIDRANLPVWQVINNKAIVLIPYLIPVLVFVIGVRVFNKHSKKFAEIL"
     gene            complement(38928..>39259)
                     /locus_tag="U1335_000158"
     CDS             complement(38928..>39259)
                     /locus_tag="U1335_000158"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230677.1"
                     /translation="YKHFVAAIILTRIAKYYSETDKGDEKPVFIFRSRADWFECIENI
                     IREEIYKEEAASFKGIYQSDLREFFYEFQSQSASISPNNCSQNIVSDDFEKKFRQGSG
                     IATICYE"
BASE COUNT        11079 a         9062 c         7525 g        11593 t
ORIGIN      
        1 gtagaaaagt aaaaaaaatt agaagtttta cctcctaatt ttcatgtatt atcttaatct
       61 tcaatttctt ttctgggatt aacagctccg acgatgtaat cttgaactaa acctgtatca
      121 tccagcacaa tcccatgtaa aactccgccg taaacagctc ctccgtcaat ccccatcttc
      181 ccatctggac tggtccagat ttggctaatg cggagttttg tttgataaag gttataaaca
      241 ggagtatgcc caaagacaat catcttccct gtggtatttt cagcctcatg gaaaggagtt
      301 ctaagccaga ctttatcatg attgctggtt tcgcgccagt ctggtaaggt caagtccaca
      361 ccagcatgga caaagatata gcgttcagtc tctatatgat aaggacaaga tttgacaaaa
      421 tcaatcaggt ccccatattg ttccatcact gcattagcat ccaccagacc atctaccggt
      481 gcgtccaagg gacgaccaag aaaggagtta atcgtcgtat cgccaccatt tctccgatag
      541 tggtcatagc ggtcaatcgg atcacgcaac caggccagaa acatccgttc atgattgccc
      601 gttaagcaaa tcgcgccctt ttcccgcacc aattgccaaa ccaactccaa acaggctttg
      661 gaattttctc cgcggtcaat taaatccccc agaaaaatca actgttgtcg attctcgttc
      721 catttcttta aaatatcaag caggagttca aacttaccat gaacatctcc tactacaaaa
      781 aattcttttt tcatagagaa tattctacca taaattcaaa ggaaagaaaa actgggagtg
      841 tgatagaact caagacatag aaaagagttc gtcctcacac ccccacacag ctccaaaggt
      901 tcgaggaacc tttggaggtt ggaaatagag cgaactttgt tcgcaacagt cgtaatggtc
      961 agatttggag tgtgaaacac gaactgctga gatttgcttt gcaaatccta tctccaacct
     1021 taaacagtcc cccagactgt ttaagccaat caaccactgc gctgagatgt tgacacgaac
     1081 tctgacaggc gggcttaaaa tttcattcta ttacaaacgt gcgttcaatt ctgcacccag
     1141 ttcttcaaat cctggtttac caagaagagc aaacatattt ttcttgtagg cttctacacc
     1201 tggttggtca aatggattga ttgcattgag gtaaccagag atcgcaattg ccaactcgaa
     1261 gaagtagaag gtgtaaccaa gtgtgaactc atcttgttgc ggaagagtga caaacatgtt
     1321 tggtacacca ccatctgtgt gggcaagcaa tacgccatcc gttgcttttt tgtttacaaa
     1381 gtcaacatcc ttaccttgca agtagccaag accatcaagg tcttctgcca tgtcaggaat
     1441 gaggatattt tttcttggtt tgtcaacacg aaccactgtt tcaaagatgt tgcggtttcc
     1501 ttcttggata aattgtccaa gtgagtgcaa gtctgttgag aagttagcag atgttgggtt
     1561 gatacctttt tggtccttac cttctgactc acccgccaac tgtttccacc actcgctgaa
     1621 gtattgaagt gatggctcgt agtttgccaa gatttctgtt acatagcctt ttctgtaaag
     1681 gatgttacga acagctgcat attggtatgc ttcattctca gcaatcttat ctgaagtata
     1741 agtcttacga gcagcgtttg caccttccat tagagcatca atatctgcac cagctgctgc
     1801 gattggtaaa agaccaactg ctgtcaagac tgagaaacgg ccaccgacat catctggcac
     1861 aacaaaagtt tcccaaccgt ttgcgtcagc ttccactttt accgcaccac gtgccttgtc
     1921 agttgttgca tagatacgct tgttagcttc ttcttgaccg tatttcttga caagcaattc
     1981 tttgaagacg cggaaagcaa ttgcaggctc agttgttgta cctgattttg aaatcacgtt
     2041 aactgagaag tccttgtcag caacataatc caccaagtca gcaaggtagc ttgacgagat
     2101 tgagtttcca gcgtaaagga tttgtggcgc tttacgctct tcacgtgttt gcaagtttac
     2161 aaaggcattg ctcaagaaat caatagctgc tttagcacca aggtaagaac caccgatacc
     2221 gataactacc aaaacttcac tttcattttg gattttagct gcggcttcct tgatacgcgc
     2281 aaactcttct ttgtcgtagt tttctggcaa atccaaccag ccgataaaat cgttaccagg
     2341 acctgttcct tgacggagca tttggtcagc tagggtaact tgtggttgca tataatctac
     2401 ttcttgagca ccaacaaatt ggcccaagac ttttgaataa tcaaatgtaa tatgtgtcat
     2461 gtcattcctc catttatgta ccataatatg ataacgcttt atcagttttt tttcaaggga
     2521 tttgtgaatt ttcatttatt ttcatgaaat ggtttgcgta acttgtttat ttttcacaaa
     2581 catagtgtcg taatgaggag ttttatagtc tgctaagact tgacccgact gtgtcactgt
     2641 tatcatattt ggcaatattt ttgacaatat atatagcggg accaggctca cataccagat
     2701 tgtcatcact tcaaaaataa atttgctatt attccctctc tgagtatagc gttgtctgta
     2761 ttcttccttc aaagacggat gaggaatgta aatgtgaaac gggacagcgc cacgtacaag
     2821 cataaccaac agcatcctta ctagaaaatt catcgcgaca aggaccgtct tcccctcctc
     2881 atgcaaggca taggctttgt ccacgtagat atttttataa ttcttatctt taatcgggcg
     2941 tggagttgat tttctttctt ccttattcaa atgacgaaca ctagaattat catatttgat
     3001 atccgacatt tctaaatcta caatttgtga agattgcttg gcaagtgtcg ttttccccat
     3061 acctggaaaa gcaaatataa acataggctt tcctcctttt cctctgtaga atagcagagc
     3121 taacaaaaag ttttcttaag aggaaatcta ttttactcct ttttccctat aaatcaatag
     3181 aaaatcccaa aaatcagtcc ccagacggag agaaatgtac ttgctaaggc agttgcccct
     3241 atttctaaaa atcagacaaa gaaaaccctc tgaaagcatg atttcaaagg gtttttagac
     3301 tatacgcaaa aagagcacac acccgacttc gcttagggct gctggattcc tcccctgacc
     3361 cgcttcacgc acgaatgttg ctccgtttaa tattataaca caaattgact aaagtgcaag
     3421 tttagagtgt aaactagcta tccgaaattg tcccatgctg agctctcaag gcctctttct
     3481 cagccttttg cttctctctt ctctgcctaa aaaagtcctg catgatttgg gcacagtcct
     3541 cttccaaaat ccccgtctca actgccacac ggtgattgag tcgctcatct gtcaaaatat
     3601 catagaggct acctgcagca ccaaattttt ggttggcagc cccatagacc acctggggaa
     3661 tacgggccaa cccaatggca ccgctacaca taacacaggg ctctattgtg acaaacaagg
     3721 tcgtatccag caatcgccaa ttgccttcta atctattagc ttcctgaata gccatcactt
     3781 cggcatgcat aatggcctga ttgagctctt cacgggcatt gtgtccgcga ccaataatct
     3841 ctccatcctt gacaatcaca cagccaatag gaatttcatc cttttcaagc gattttttgg
     3901 cttcagccaa agcttggttc ataaaatatt ctttttcttc ttgtgtatag ttcataggat
     3961 tattataaca gaaaacagcc ccgaggggct gtctgtacag tctctattac aattcgccaa
     4021 ctaatttcac tacgttttct acagtgaagc cgtagttgtc aataactgtt tgggctggag
     4081 ctgaggcacc gaatgtgtcg ataccaagga ctttaccgtc aagaccgaca tacttgtacc
     4141 aactttgagt tgcacccatt tcaattgcca agcgacgacg gatggcattt ggtagaattt
     4201 cttccttgta ggcagcatct tgtgcatcga agagctcagt tgatggcaca gaaaccacac
     4261 gaacttttgt accagctgct tctagttctt tggcagcttt aacagccaag ttgacttctg
     4321 aaccagatgc aagaaggatt gtgtcaaaac ctgctgcttc ataaactaca taagcacctt
     4381 tggcaacctt gtcaaagtct gtgccttctt caacggtcaa gttttgacga gtgaggacaa
     4441 gggctgatgg agtagacttg ctagtcaatg acaagtacca agccgcctgc gtttcacgcg
     4501 catctgctgg acggaaaacg ttgaggtttg gcatagcacg aagtcctgcc aagtgctcaa
     4561 tcggctcgtg agttggtcca tcttcaccga ctgcgattga gtcatgagtg aagacataag
     4621 tcacaggaag gccttgaaga gctgacaaac gaactgctgc ttttacatag tctgagaaga
     4681 cgaagaaggt accaccatag acacgaagtc cgccgtgggc tgccatacca ttcaagatag
     4741 ttcccatggc aaattcacgc acaccaaact ggatattgcg gttgagtgga tttactgaat
     4801 cttgcaaacc atcttccttg atgtaggtca tgtttgagtg agccaagtca gctgaaccac
     4861 ctaagaaagt tggcaagacc ttagccgctg cgttgagggc atcttgtgat gagttacgag
     4921 ttgcttgtga gaaaccattt tcatagactg ggaagtcttc tggcttgatt tcgactacat
     4981 cacgaccttc caagatagca gatacttctg ctgccaattc tggatgagct tgcttgtagt
     5041 cttctaccaa ttttacccaa gcatcgtaag ctgcagcacc gcggtctgct acgtttgcct
     5101 tgaagtctgc ataaacttcg gctggaattt caaatggtgc atagttccag tcaagtgcct
     5161 tacgagttgc ctctgcctct tctgcaccaa gcggcgcacc atggactgcg tttgtacctt
     5221 gtttgtttgg tgaaccgtga ccgataacag tcttgatttc gataagagat ggcttaccag
     5281 ctgccttggc tttttcaata gcagcaaaga tggcatctac atctgtaccg tctgttacga
     5341 ggtctgtatg ccagccataa gcattgtaac gggcacgtac atcttctgtg aaggagtctt
     5401 ttgtttcgcc atccaagttg atgtcatttg aatcgtaaag aacgatgagt ttttctaatt
     5461 tttgaagacc tgcgtaagaa gccgcttctg ctgaaacacc ttccatcaag tcgccatcac
     5521 cacagattac gtaagtatag tggtcaaaga ttgggaaacc atcgcggtta tatttagctg
     5581 caaggaaacg ctctgcttgc gcaaaacctg tcgcagttga gatcccttgt ccaagaggac
     5641 ctgttgttgc atctacacct gctgtgtgac caaattctgg gtgacctggt gtttttgaac
     5701 cccattgacg gaagttcttg atctcgtcca tgctgacatc ttcaaatcct gacaaatgaa
     5761 gaagtccgta gaggagcatt gacccatgac ctgctgacaa gataaagcgg tcgcggttaa
     5821 tccagtttgg ttgatctggg ttgatgcgga gctctttggt aaagaggctg taagccattg
     5881 gagccgcacc catgacgaca cctgggtgac ctgattttga tttttcaatg gcgtcgatac
     5941 caaggaaacg aattgcgttt actgaaagtt gtgacatctt attctccttt aataaagtca
     6001 tggtttcatt ataccataaa gcgttttcta tgtctgtttg aagttttatc ttatctaagt
     6061 tctacataga aaacaaccac agcaatctgc tatggttgtc gggaggaaag catactattc
     6121 ttctgatttt ttagttcttc cttgtgcagc aactgtcaaa ccaagtccag caagtccgag
     6181 acctagaagt gccaaatcac tttgtcggtc acccgtaatc ggcagactcg ccttgcttgc
     6241 accacttgtc gcttgtctag atgcttgagc agtggtagaa agactcggtt tttcagcctc
     6301 tttcttagca tccatactgc ctttcacaac aatacgtgtt tcgctatcaa caactgtttc
     6361 tgataacaaa tgagtagcaa ctaccttacc atcaatcaag acatcctgat aaacctgaac
     6421 tttcttacca gttttgcctt cttgtaggac ataggattga cctttagcaa gagttgcatc
     6481 atagcgaact tcctctacaa tcggaaggac tgtttcttct gtacgttctt tcgtagtaaa
     6541 gtctagactt ggtttttctt cagcagtagg tacttctgta ataatgtcag ataaacgaat
     6601 caccgttgca gtcaatggcg caagtacaac tgcatcatct gtcaatgtca cacctaccaa
     6661 atcagtcagc gctgctattc cagcccgctt accatcgacc agcacttgac ccttaagcaa
     6721 ttctttgtaa ctatcagaaa gaacaaagct gcgctcctta ctgtcggcgt taacaaagac
     6781 agcatatcga tcaccgttgc ttgcaatggt ttgataggca ataaccacat cgtttgtagc
     6841 aataccattt tgacctggaa ttgaaatcaa gctaaccatt tgatcgactt ggtcttttgt
     6901 tcccaaacgg aaggcatctg tagatttgcg cagggcaatc aatccttttg taaaggcctg
     6961 agtacgggta ttctctggat agagcacctc gtctgtcgct ttggtccagt caaacttgtt
     7021 gatcgcatcg gatgaatcat aagaatcatg aatgtagtat ggatagtcaa atggcgtgcc
     7081 atctgcattg gtcaacaaat gcgccttgtt cggtaccttg tcctctgtaa ctggttcctt
     7141 gtaatcagga tggcggaact gtttggtccg tccatactcc tgaccagaat ggataaacgg
     7201 tgtcccttga gcagtcaaga ctagcaaatt acccaagcgt tgacgttggt gaatttcagt
     7261 gtaattttca gcgattgatg gatccttctt gatggactga gcgatgatat caaagagggt
     7321 caagttatca tgcgcagcaa tatattggat cacatcacct ggatcatctg ctaagaaatt
     7381 acctggttgt gccttgatgt tattgaagac agactcaaca ctcttagcac cgcctgtgat
     7441 aaaggctggc tgaccttcgt ttggataacc agatttaagt gtattgcgaa tttcatctga
     7501 gaataccgca accgtatctg ttgaactcat ccagtcttgg tccgctggct gaacaggctg
     7561 attggcgtca cctgtaaagg ttctccaacc ttcaccaagc ataatgatat ttggattgag
     7621 tttttgtgcc tcggtaaagg ccagctcaat tgcttcggca tcatggtcac ccatcatatc
     7681 gaagcggaaa ccatctacct taaactcgtc cacaagatac ttgatggaat caactaagac
     7741 acggcggctc atgtagtgag tggttcccag acgaccacca ccaaagcttg atttagccgt
     7801 accatctgcc tccatgaagt gataatagtt tggctctaag tcttcaaata agaaggtctt
     7861 agaagtgtgg ttgtagacca catccaaaat cacacccatg ccttgtttgt gaatttcatt
     7921 gaccaggttt ttgaactctt cgatacgctt cattggatcg gtcggatctg tagaatacat
     7981 acctgtaaag gcaaagtagc tctgtggatc ataaccccag ttgtagttac tgttgcttga
     8041 cgcgtactca ctcatccgct ctgcattttt caattcattg acataatagt agctcataac
     8101 tgggagcagt tgaatatgag tcacacccag gtctttgagg tagctgagac gttctgcaaa
     8161 ggccgcaaag gtaccgaact gagctgtcaa ttcatcagaa atagcaggat cggatgtgaa
     8221 gtcacggaca tgtgcttcat agataatggc atcctcacgc tgattgaagt taggaattgt
     8281 ggcatagttc aaatcacttg gaccaacttc tgctgggtcc acaatcgcag cttttgcaat
     8341 ccgataagat ggatctgtat cagccacatc actattccac tccgctaaag atttagcata
     8401 tgggtctaaa acaagaacag attgatcccc acgagtgatt tcataatggt agtagtaacc
     8461 acgatagtcc gcgataccaa gacctgattg actgttcaat tcgaggtccc attgtccctt
     8521 gtcgcccttg gtcatggcta atttaccgat caccttagat tggtcatcct tatcgtaaag
     8581 aacgactgcc acattgtctg cacttggaga ccagagagtc atatcaacga cactgcctgc
     8641 ttgactcaca cgcgcaccaa gctctccatc ataagcataa agctcatcct tcaactgcca
     8701 gctcatagtt gttgtgaagc tatcattgcc atatttgagg gtatagcccg cattttcttg
     8761 gttgaaatcc ccgaggactc gcaccttgtt gctggtaagg tccaagacaa ggtccgtcac
     8821 agcaactgtc tgaccattct tatctgttac agacaatttc tccaagatgc tatccttatc
     8881 cgcaccttcc agcgttgtaa aagctgcttc taaagctgtt aaactaacgt gagaaacacc
     8941 tgtcacacgg acgttgttca caaaataagg atttgtgtag attgttggat catcatcttt
     9001 gaggaagatt tgtgtctgat ttttcaaatc tttaaagcta taatctttct gctgaatctt
     9061 cacatcatct cctgacttgc tttcatccaa tagcaagaag ccaatggaac ttggtaaatc
     9121 tgtcaatttg acatcaatat aggcaccgta cttgccttgg ttttcaaaat caataccatt
     9181 tggccagtca cccaaggtaa ggtcagtcac atcaccccat atccagagac ctttttggtc
     9241 ataattgcca tcggtacgga agtaattgat acggatgtag ccttctttaa gcggttgata
     9301 gaggctgagt tggtagtttt catcaaacca agcttcattc atcttggtgc taatccgttc
     9361 aatggtcttg tcacctgtga tgttctcacc agaagtgtta ttaatcaata gactaatctt
     9421 gctggctgtt tcatctttca tcttgatgtc cagataatag ccatagtcat cctgtttagc
     9481 cgtgctgaaa ttggttgcac ctgttggcca agcaccaact tctgatgatg gtttttcgac
     9541 atcatcccat gtccacaaac ctaagctaga taaattatca gacggtagag ttttaaagtg
     9601 aacacggaag tagcctgctt caattggttc ttcagttgct ccttgcacac ttgcattgac
     9661 gatgtcacct gcttctgtct gaaggagcat ggtgccacct tgagcgatag ttggaagttc
     9721 tacttgaacg acccatttac cgtctttctc gatagcttga taagattttc ctgtataggc
     9781 atctgtgaca actacatcct gaccagatac ttcaagcgcc atttccttgc tctccgtatt
     9841 ggttgagaag acaagatagg cagcttgttc ttggtaactg cgtttgctga taagccaacc
     9901 ttggctatca tttccagcaa gtgtgcttgt atcaccacgt gagagcaatg ttgaattagc
     9961 attacggaaa gccaataatt tttggtaatg gtctgtgatg tcgctagtct ctaccttgct
    10021 ccaatcgaaa tcgtatcggt tgtcataaac tggccagttg ttttgtccag attgacccac
    10081 ttcttcaccg tagtagatga ctggctgacc tttagcagta atcaaaagac tagcagccaa
    10141 tttcagtttg tccagatttc cttctttttc tgcgccaccg agactgtaga ggaaaccatc
    10201 ttcgtcatga ctgcccaaga attgacccag agaagctgca ctagtcagaa ccttgctacg
    10261 ctcttccagc tcttttccag ctgcttttag ttgaccattg accagatatt tggcaatatc
    10321 cttgaagcca aagtccaaca aactgtccat agtaccgata cccaagtcac ccttggtatc
    10381 cttataattc gctccccaag tttccccaat caagtggaag tcagggtctc tatccaccaa
    10441 ttcatttttg aaatgttgcc atgtggtatc atcaacgtgt ttaactgtat cgacacggaa
    10501 agcatagata gagttgccct tggcagttgt cgaacgttcc aaccaagatg cctgccaagc
    10561 aaccaactga ttgcgaacag ctgcttcttc tgtcttgaag tctggtaatc cagataatga
    10621 gcctaattgg tcatctccct gcttgtcttc ttccttagtc cgtaccatac ctgcaaaggt
    10681 ttcttctgta ccatagccag catggttcag caccacgtca acaacaatgt ttataccttt
    10741 ttccgccgcg gcatcaatca attcgtggaa atcagctaaa cttcccaaat gcggattgag
    10801 tttctcaaaa ttggatgccc aataaccatg gtaagcatag tactctccat ctgttgcgct
    10861 accaacattc tgtggaatat tttccacaat cggagtcaac cagatagagt ccacacctaa
    10921 ttctttcaag tagtccagct tggctgtcac tcctttgaag tcaccgccct ggtaaagacc
    10981 gcgtgggttg gaggctgttc cttccactag tttgtcattg ctggtgtctc cattatagaa
    11041 acggtctgtc atcataaagt agataacttg ctcgtcccag tctttttcac catctgcctt
    11101 ggtacgctct gtaatggtta catctaggct agtttcgtag taaccgttgt ccttgtcata
    11161 gacctttaca ggaagactat atgtacctgg tgctgtgcta gacgtcgctt taatggtcac
    11221 acgattgagc tcagtagaga ttggcacaag acctccaccg atggcacttg tatcgacttc
    11281 cattttgaca atctcagcat tttcagggtt ggtgacagtt acagatacca agccactttc
    11341 attgtagttg aatggtgcct tgctactagc ctcaagggtc acattttttg tacccggagt
    11401 cgctttactt gtatcgagtt ctactttctc ttcaataaaa tatggattgg tatagacttt
    11461 gtcgtcgtca ttgcgaagga aaatttggct atgccgttta cgatctgcaa aggctaaatc
    11521 aatggtttta ttgcctgcca aatctggatt attctgattg attagtagaa atccaagctt
    11581 ggaatctaaa ccattcgaga ggggaatgtc aacataagca ccgtatttgc caagtttaaa
    11641 atcaacggca cctgttggcc agtcgctact tgcttcagtc gtatcgcccc aagtccaaac
    11701 gccccaacct tcataattat tgtcttcacg ggtgtagttg atacggagga cattttcatc
    11761 tttgagtggc tcataactag acacgctata atcactagca atccaagcct cattttgttc
    11821 cggaacaaga agctccactt tctggtccga ttctgttatt ttttccccat tcttgagaac
    11881 cagatagcca atcgttcctg gtgtctcaga ttttttaata tcaacgtaat ggccgtagtc
    11941 atctacctga ctgcttgaaa aattcgctgt atccgttggc cattgattac tatcggacgg
    12001 ctctgccact cctccccaag tccacagtcc ttggctctct ggcgctgttt catctacatt
    12061 ttcaaagtgc agacgaatgc taccttcttc gataggagct tcctctgaag caatcgtatc
    12121 ggctgtttct gttaccgctg tcgcttcagc taccatagag tctgtagttt ctatcgcagt
    12181 tgtggtcgct tctaccacgc cgccatcctg ttccgaaaga gtcgttgaac tagttgacgc
    12241 agggaggaca acttcctctg cctgcactag ttgacctgct ccacttaaaa acagagcagc
    12301 cgcaatccca acagaggcta cacctacatt tagtttacga atgccaaaaa tctgtttctt
    12361 ctctagcatc cctgttcgtt tcatattctg aacggatttc tttttcatag actcctccat
    12421 ataatactca atgaaaatca aaaacagact aggcgacgca gatgcagata gaactgaagt
    12481 tcatcaaatc atgtcaacaa cgtctgattt tgattttcga agagtataaa taagtttgaa
    12541 ttgtacacta ccagtatata caattccaag gagtttttgc aaacgttttc ttaaatgtta
    12601 gcggtaacaa gtttttaagc tactctctaa caaacataga ataaacagcc ccctcctctt
    12661 ttgctcttag accgcccact gatcaaaaaa aagagactac tgaggtgtag tctccctttc
    12721 aattaacgtc gcctgacagt aatgcccctg tctagccaga ggcttgccat ccaatatcgt
    12781 cattaaatgt ttgacgctaa gagcccccat ttgacgaatc ggctgcttca tcgtcgtcaa
    12841 ggctggtctg gacatccgat ctaaaaagaa gccgtcaaaa ccaatcaccc caacgtcatt
    12901 cggaatagac tttcctagag cttgtaaacc tcttgtaacc ccaagtgcga gacgatccga
    12961 tgcgcagata aagcaggtgt tttctggtaa ataatcaaga tttttcacaa attcttccgc
    13021 aacacgagaa cgattttcca atcgatagag atgagtttct cggccctgca tcgcatcttt
    13081 gtagccttct tctctccctt tttcaaaggc ttctggcaag tcaatcccta caaaaacaat
    13141 cctctcataa ccttttgata aagcaaactg ggttgcggac ctagtcgcca aatgattgtc
    13201 tgaatctaca aaaggaaggc cttcttgatt ctccccaaat aaaatcaatg gcttccgcag
    13261 ccctttcaac caagggtagt catccttgcg agcgccagtc acgatgtaac catcacattg
    13321 atcagtaatc tgacttggat tggtcaccaa ctgcaaggta taatttcgat gattgagctc
    13381 atcagcgatt cctgcaagaa ggtcgatata gtacggctct accacatcca tcttttcgag
    13441 aatgacagcc tgaacaatca gtgtccgttg ctgggccaag gccttggctg ccacatttgg
    13501 cttatagttt aattcttcca tcgcagctgt tacgagcgtc cgcagctctt gtgtaacttg
    13561 ttctggatgg ttgatgacac gcgaaacagt catctttgat acattggcta acctagccac
    13621 atcggctaat gtcgtcatag aactcctccc taattctatt tctgttgctt atcttttagc
    13681 aagtaaacag tcaaaatcgt gcaaacgttt tctttgtttt attatatcta ttcctctact
    13741 aattgtaaag gcttttctgt ctttttcact caggcatgac aaaaacactg gcggctgcca
    13801 gtgttttggg gttatttcct gcttcaacta gcctcgtatg ctgtgagcaa gttagaaaat
    13861 tggttcaatt tgcaattttc atccgttttg gtgaccttct aagccagact actgagataa
    13921 tctatcagtc ctgcgtcgtg aaatcagaag gctagataaa ccaatcaggc ctaaaccgac
    13981 caagctaaat gaaggatgtg cttcgccagt agctggaaga gctttttggg tctctgatgt
    14041 cttggtttga ttgctagggg gttgagtttc tgagactgtt ttctttgttt gcaagattgg
    14101 agcacttgct acatcagttg ccttgcttgt cttatttgtt agaactgctc ctgaacctcc
    14161 tgttccctga cctgaggaag aattggtagt cgacttgtcc gtcacttgat tacttgaggc
    14221 gcttccatgt gtgtcacttg gaagtgctgg tgcagttggc tcgcttggag tatctgtagt
    14281 ggcaccgcca cctgattggg ttggagtgtc tgtttcgcta cctgtacttg gtggggttgg
    14341 ttgctcagca ttttccttgt ctttcaaaac aagggcggcc atgccgtttt ctattctttt
    14401 tatatccgtg cggtatatgt taaataaagc ttctgggggt ggaatactgc caatctgtgt
    14461 ttttagctca accttccctg tcagtaaatc attatacaaa tctaccaaag taagcatata
    14521 agtaatctct tttcgagatt cttctgtata taaactttca tccagttgaa caaccttgag
    14581 caaagtatct ttcaacaaaa cagtctggtc gtataaggct ttggcctcct tatccgtcat
    14641 actatgtact ggagcattat ctttgaaggg actaccaatt ttttgatatt gaaatcctag
    14701 accatctacc aagattccca tagatgacat gaaactttta gcatgagcat acgagatagt
    14761 ccgctcgctg gcagtccctg gtaccagttc ataaccagca aattccttgg ccttgacaac
    14821 tagattctct cctggactaa cggtcagata agcttcttca agtacaccat cttgtgttct
    14881 atactcaata ggcactccga tcgcctcttc tgcaaaggga acacagagaa tggtaacact
    14941 ggtcttacca gccttaactt catcatagga tagattacca gatccatatt tcgtactagt
    15001 atagccttct ggaatgaaag ttgctaagtc tggactccga ccttcaagaa tctccttttg
    15061 ggaagtctct aaaatctgac ctgtaaccgc atggacaagg gtcacctgat agatcaaggg
    15121 agctgcctct atgggcttgt agtaaatcag tacttccttc tgtcctgact gaatgtcctc
    15181 ataacggatt aactcgctaa aagatattaa acgatagtaa ccatctattt ctggaccact
    15241 gacaaactca aaactccctc cttttaattc ctgagttttt ggagcagcaa tatcctgtag
    15301 gcccgtttct gtttcgacta catagcggac agtatagctt aggcttggca aggtatcaga
    15361 aagtggttta tagtcctttc tctgataggt gacagaatca tagattgcaa aggtggcatt
    15421 caggtcatcg taatggtaga ccgtctgacc tgattctgaa ctcacaaatt gatagtctgg
    15481 ataggcctga cgaatatcaa tagtctcacc tggtttcaac tgataagtga cttcctgtaa
    15541 tctttcttca tcaccatcat tttcacctgt tttcaggcga taatatactg ttaaactccg
    15601 actagcttgc tcctctgcct gtacgactat cggttccaag ccttctaatc cttctggaac
    15661 cactaaacca cccaaaacag tgaaagctgc caacccaata cctagttttg tccatttggc
    15721 aagctgccta tgtttacaat gttctttcat tctacatcct cctcgtagat cattcttttt
    15781 ggtgtttaca tgaacacaat ataggattat actaaaaaaa aaaagcacgc tgtcaagaga
    15841 ttatgcgtaa ttaggacaaa tattcgtctt ttcataactt cctctgtttt tcattcactt
    15901 acagaaaaaa caccagcatt gccagtgttt tccttctata cattttcttt ctgaatgcgt
    15961 gctaagaatt gcttagtacg ttcttctggt cgacggtcaa aaatgtcttc tggtcgacct
    16021 tcttcgacaa tccgaccacc atccataaat atgactcgat cagctaccgc acgcgcgaag
    16081 cccatctcgt gcgtcacaat taccatggtc ataccttcct tggccagctg aatcatgact
    16141 gccaagactt cgccgattag ttcggggtcc aaggccgagg ttggttcgtc aaaatagatg
    16201 acctcggtct ttatatctca tattaattat actccagctg gtgggtaaat atagctgact
    16261 gttccttcgc tagtcgttgt tggatcaaag aaacctcgga cattacttgg gtagtatact
    16321 ccaccatagt ttgattcctt aacttgaatg tgaccgttag ctgccacatc tgttacatag
    16381 gcaacatgac cgtagcctcc atctgtccat acagcaatag cgccaacttt tggaatagtt
    16441 cccacttcat atccaagcgc tgtcgcacta gctgcccaat ctccaccatt accccaatag
    16501 tttccaaccc aaggagccat ttctttggca ccccaagtac actgacccgc tggataggta
    16561 ttagccgtat attccacagc aacctctgac accatattgg tagccaaagc agcctttgca
    16621 gcggcagcag ctttggctgc tttttttgca gcttcaacct tttttgttaa cgctgatact
    16681 gtcggactat cgcttataac tgtgtcatct gcactgacat tcaccattcc gaaccataaa
    16741 agatttccta tgagggctgt aaacagtccc aatttgaatt gtttttttat catttgataa
    16801 ctcataatat ttgattcctt cgtgtttttc tgccctatct atcctaaggg acaatccttg
    16861 cagagagctt aaagaaatgt aacaaatatt acagacaact tgcaatctct taacaatcac
    16921 agtgttcgga ctttttgtca aaaaaacgac ctccaatacg gaagtcgttt tctatttagc
    16981 gtaattattt tctcctactt ctaagtacac tgagtaagat gaacaccaag ccagaaataa
    17041 tattgagata cttatttcca aagaggggac taatcgcaat cagaaagaaa ccaagcgcta
    17101 gtaagaaggg agatttgttt ttggaaaaca ttagtcctca ccagccttaa ccttgttggc
    17161 cgcaatgaca aatggtgtcc aaatcaggaa ggcaataaag aggttgaaga gtgaaactag
    17221 ggctgccata atgttaccac ctgttgccaa ataagcgtat agacctggcg gggtaatcca
    17281 aggaacagct agaaagactg gcggtatcaa gcctgctgct gttgccaaat aagcaatcgc
    17341 tgcacaaatc ggtggtacaa tcaaccatgg aatgacaaag agtggattca ataccatcgg
    17401 aataccaaag gtaatcggct cgttgatgtt aaagactccc atcggagctg atagcttggc
    17461 aaccatcttg tattcttccc gtttagagaa gatgaaaatt gcaataatca acgcgagggt
    17521 gacacctgat ccccccatct gagcataggc atcaaaggag ccacgtgtcc aaagccaagg
    17581 caaatctgca acacttcttg ttgcttcata gacagcagta ttctcattca gggcgatacc
    17641 gtaaatcccg tccataatcg gtgccaagac attgtgtcca tgcaaaccaa agaaccagaa
    17701 aagttgaacg aggaaggtta ggagtatgac tgagccaagc ccttgtgata aaccaagtaa
    17761 aggcatctga atataggttg acaccacatc actcaaggac tgaccagata cagaaaatac
    17821 gagataagcc acgatagaag aagcataaat cgctgctgtt ccaggaataa tagccgcaaa
    17881 agccttgttg actgctggcg gaacagtgtc tggtagcttg atgatgatat tgcgtttcac
    17941 taggcttgca tagacaaaag tcgccaggaa gccaataaac atggctgtga agagacctgt
    18001 tgctccacca tatttcagcg caatcgctcc ccattgactt gtctccagag cagaaactcc
    18061 gtcggtggtg acaatggtta aaccaagctc ctccaaggca gtaataacgg atttatctac
    18121 cccttccaaa gcagttgaaa tggtaaggct ttgaggaatg gttgaaatga aggatgcgaa
    18181 ggaaatcaaa ccgcccgcta aaggattgac cttgtacatc agagacaagt tgtaaccaaa
    18241 ggtaaaggca aagacaagcg ccataattcc aatggttcca aaataaacat agccgttgat
    18301 gttaataatt ggctgcatag cttctgcaaa gcctgtccaa cccatattgt taggaatgtc
    18361 cctcagaaag acattcaaaa gaacggccac cgtacctgcc atggtaatcg gcatcatgga
    18421 gataaaggaa tcacgaatgg caatcaaatg acgttgcgag ccgatttttc ctgatatttc
    18481 cataaacttt tcagaaatat ttgacataat ctgtctcctt ttctattttt ttattgttgt
    18541 ataaacaaaa tcacgatgtc gaagcacctt ctttagaata ccgaatcagt gcttctaatt
    18601 gagcatctgt ctgccgtttc aaactcttag agaagatttt ctccattaaa aagtagttac
    18661 ctctcataaa taagtctgcc gcttccattt cataagagta ttcaatctct gtttgattgt
    18721 cctctaaagc gtgcaagtca tagcagatat gctcttttcc tcgattggaa tgaaagcaaa
    18781 cagcataacg atagggggca agaaattcct ctacacgcac cttaacacta tgctctcctt
    18841 tgtctccaaa tgtttttaca taggtcaagc cttcctgaat atcttgatca agaagaggac
    18901 gtccagtatt ttgctgataa tcctctttca aggaccgacc aatcgcagca aacaattgtt
    18961 caattggaac ctgtcctatt tttttgattt tcatacctgt cctcctatct ccgttatcca
    19021 acaaggtggc ctagccacaa ttcttctgtt cagctaaacg cttatagagc tccactactt
    19081 ccttggccat atcaataaat gtcaaggcat tcatcaagtg gtcctgtcca tgcaccatta
    19141 gcaaggtcac ttccaccgtt tgcccaccag cttcttgggc tagtagacct gtttgtgact
    19201 tgtgggcaat atttagggag gtgtttgctt cttgaagcaa gtgctctgcc gtctggaaat
    19261 cctcctgctt ggccgcttga atcgcctgaa cagcatagcc ttttgcctct cccccataca
    19321 taataagccc cataatcgct tctaagtatt ccggagagtt catactagtc ctccattagt
    19381 gccaaagcag catcgagcac cttagcacca ttcatcactc cataatccat catattgatt
    19441 gcatcaacct tgattgcagg ctcgaactta gccttgtagt catttagcaa aaatttaacc
    19501 tgtggaccta gcaaaaggac atcaatctcc ttttgactaa cttcactatc agcttctgat
    19561 acagggactg cccaaatcgt tgcctctatc cccttttctt ctgccgcttt ctgcatcttg
    19621 gtcaccaaca tactagtaga cataccagca ttgcacacta acataatttg tttcataaaa
    19681 aactcctcct acccctgttt ctgaatcaag ggaataaata tatcgactaa ttcctgatag
    19741 ctaggatttt gcactagcct ttcttgcaag gacctgtctt ggacaaattc aaccagacaa
    19801 ggtgaaatat acttcagatg cggattccga cctttagacg gagatagaag aaagacaaac
    19861 tgcaccttct tcccctcttc ccattcaacc gcttccttac aaactccaac cacaatctgc
    19921 tcagagaaag tcaggggaat agctggatgc ggaaaggcca acagttctcc aaaaacgacc
    19981 gagctatagg actctctcac atttacctgc tccctaaatt gttccacaaa gcctgattcc
    20041 ttggcttcat ccaaacacgc tattagttgc aacaaggtcc tatctcgact catctttttg
    20101 tccaaagaga ctattcgcaa gggtgaaaat acagcctctg caatctgtct cgcctgctct
    20161 tcctccatag gcaaagcctc gttctgctca actcggacag gtgtcacttg ttgaagatag
    20221 gagcgaattg cctcgatatc ctgctccgat aggaaaacac tgacggtgat aacaggtgtc
    20281 aggaaaatta aattggacaa gctaatcgaa gaaataatca ggtctacatc tcttaaacgt
    20341 tcctctgtta cctcgtagta actcacaaca tctgcaattt ccaagcttgt tgcaaattcc
    20401 ttttccaaac gatttcgcaa cattaaagcg cttccaattc cggtcgcaca gacgaccaat
    20461 acccgcaact ttttccgccc ctcgtatcgc tcaattgcag ccaatacatg cagggtcagg
    20521 taggcccatt cgtcatccga aatgctatag gccaacaagg tgggcataga agcaaaagct
    20581 tgcttggtca gctcaaatac ttctatataa tccctatgga tatcagccac caagggatta
    20641 gccaactgaa tctggtgctc caaccgcgtc cgtaagggaa gcaaatgagc gacaatcccc
    20701 ttgaaaagct gtcgatcttt taccaaatcc agaccagtca actgagagag agtctgtaaa
    20761 caagtttcaa cttcttcctc caaaccgtcc tccaagtctg aaagctgact agggttcccc
    20821 gtcaacttga ccttcaggtg tagagcaata tagttagctt cttctacagg aatcgccact
    20881 tgaaattctg tttcaattcg ttcgataatt cgtccagcaa cctgatattc cttggaagat
    20941 tgaatctgat cagatattgg aaatcgctct aaactagctc cccccttcat tcgttgtaag
    21001 agcagagcga tatgaagaac caggttttgc atcacaaaat cagacaggcg aagtttggca
    21061 tcacgacact catccaagac aatcaacatc aggtctgtaa accgaatgtc tggtaggagc
    21121 tgactttcca ccaaaccata aagagactga ccattccctt gtccaaaaaa gtaatccatg
    21181 atgaagtgcc gaatagcagg ctcctccccg cttaattcta cacctctccg tgtgaacaac
    21241 agttccagtt ggtaaggagc aaataaattg cgaatatccg cgatgataga atgcagggtt
    21301 gtttttccga taaacagctc tcgttgcaaa cgatccatgg actgaattgg attttcaaat
    21361 aataacttac ttaaaacata ccgttgtcgg tccgtcgctt cctccagttg ccgtaagtcc
    21421 gtcacctgct ttttcaaccg tagctgttct tgccaaaaca tttcaaactc aaccggtctc
    21481 tctaccagca aacagtagcc cttactttgt ttggacaaaa tagaagcacc gctagcctct
    21541 agcgaaagag agagttgttg gacatacttt cttgctgttc gatcactgac acccaaagcc
    21601 tttgccagtt ctatactaga tacaaagtcc ccttgttttg tcagtaaata atctgccaga
    21661 cgaacttctt ttttagatag catactccct cctctccgca agatttatac gaaatataac
    21721 aagactagta agctagagcc tgttgataaa aacatatttt tatatttcta ttgtagcata
    21781 tcctcaggct acaagggttc tctttttttc cgtattgtta atgaaaggaa tcggacgcaa
    21841 cgattcgcaa tcgaaaggat tgccaaggct tgataaaagt gagcaagggc agatagtcag
    21901 ggcaaattcg tccaacccga ttcacttttg aactaacggt gaactccctc aaagctattt
    21961 gtaactctcc cttgtaacga ccatataggt cattgtcaat caagacatcc cctcgctgca
    22021 caagtatttc cctgtctgta tgtgcaggaa tagcagcatt cttgtagaca atacggggca
    22081 tggtcgaccg aagtaggtaa gctgaaatgt ccccacgata aacatgatca aactcaatga
    22141 tttcccgctc cacagctgtc acttgcccag taagttctac aggtaaacaa atgtcctctt
    22201 cttccaagat agattgaata gactggagct cctcctccga gatgaactga ttggagatga
    22261 gaatacagtc aatcaaacct gtcgccttga gccaggcaat ctgaagaggt aaggtctgat
    22321 tgcgatgctc ctccaaggta ggcaggcctt ctgacaagga ccaaggccct tccgttgcag
    22381 actgggcagt cacaaaagct gccgtctgta tgccttcttg gtgatagaaa gaagacattt
    22441 ctaaaaaatg ctcttctgat agtcctgtat aggcgtgagg atagaaatta tgacaggcaa
    22501 caatgttatc cctatttgcc tcactagcta gcagttgcgt cagtaagacc ttatcggtac
    22561 tcagatttag ttcaatcttg agcccgtaag gattctgtgt caagctgaca atctcctcca
    22621 aaggcaaggc ctcgtccaga cgaatccctg tcagccctaa accatgggct tcttcaatga
    22681 gtgatttctg ccagccctgt gcctctataa aactcgggct aagatccgca atcacgacta
    22741 tccccaactg acgagcatag gcaatcaagt cccgatagag ttgcaaggtt tcttgggcat
    22801 ctcctccaag ttgcaagaga ctcataaaca tccgccgtgc tccataacgc cccagcaagt
    22861 ctatataagc cttagactct tccagagaat agttttctgg atagattgaa aaaccaaatt
    22921 gcaccattgc tcctcctaac gactaaatcc attggcatca ctcagcgcct taaaccaacg
    22981 tcccgatttc ttaatcctac gctcctgagt ctccaaatcc aactcgacca gcccataacg
    23041 atttttgtag gcattgagcc aagaccaaca atcaataaag gtccacaaca tataaccctt
    23101 gcagttagcc ccttcctcaa tagcccgatg taactctatt aagtgatctt caataaattc
    23161 aatccgataa tcatcctgaa tgacctcatc ttgccggaaa gccgcttcac cctctactcc
    23221 catgccattt tcagtgacta accactcaat attgttgtat tggtcccgaa tattgattgc
    23281 gatatcgtag attccttttt catagatttc ccagcctcga tgcggattga tttttttccc
    23341 tggcatatcg taaggtgcga agaagtgctc tggagtcaaa acctctccct ctttccagag
    23401 ctttgtcggt gcctgtacac gaagaggttg gtaatagttg actcctaaaa aatctacccg
    23461 attttcccta ataatcgcca gctcttcctc gctggtttca ggactcaatc cgtattcctc
    23521 aatcaagtca accaagtccc tcgggtattc tcccaataca gaaggatcta agaagctctt
    23581 ggtttggaag agctcagcta ttttagctgc cttgacatca tcaggatgct cacttcgagg
    23641 ataggccggt gtcagattca ggacaattgc aattttcttc tccaaattca cttcatgaca
    23701 ggcttttact gccaaggaac tagccaactg agtatggtag gcaacagcaa ccgccgcctt
    23761 ggcatctacc ttgcaaggat aatgataatc ccctagatag ccacactcaa ctggaacaat
    23821 cggctcatta aaggtaatcc aacgatctac taggtcgtca aacaattcaa aacaagtacg
    23881 agcataggct tcatatgccc aaacaatgtc cttgttctcc cagcctcctt gctcctgtaa
    23941 agcataagga agatcaaaat gatagagatt aacaaacagc tgaatccctt tttcttttat
    24001 caaagaaaat acagaacgat aaaaagtcac agcctcctga ttaacctctc caacaccctt
    24061 tggaaataac cgtgaccact gaatcgatgt cctaaatact gtatgtccag tttcaaccaa
    24121 taactcgata tcctttttga aattcttata gaaagtggaa gtcctctctg gacctacttt
    24181 cccatggaaa cgttctggct caatgctgta ccagtagtcc caattattct gtccttttcc
    24241 atcgcccaac tcagttcctt cactctgcgg acccgatgta gaagtccccc acaaaaaacc
    24301 ttctggaaaa tgataaacta ccttatcctc tgtcataacc aattcctttc ttctttatct
    24361 gatcgatgac actcctaaat tgtggcaagt acgcctcatg tgccactagt aattcttgta
    24421 agacacgctc tgccaattct ccattcggaa tcagaggatt gagggcaaaa gcctgtaaag
    24481 ccaaagcgta gtctcccgtc attgcagccc caacagtcgc caactccatt tgcttcattt
    24541 gctgcaagta tcccctgacc accatcggtg ttttgggaca taccaaagga agcgcaccct
    24601 gggcagtaat gacagatgag acttcaacta cgcaatcctc tggcagataa gaaatcactc
    24661 ccctattaac cgtcgaaacc gtcataattt ccttgctgtc gttgtatata gcacaaatga
    24721 gttgacaggc aacatcgcta taataagcac caccgcgttg ctccagttgc ttaggcttat
    24781 ggtccaaatt tgaatccctg tagagctcaa acaactcttc ttcgacctct tgaacaacct
    24841 gagcccgcac cttcccttga cgatactggt ctaaggtatc tgccaacatc tccttttcta
    24901 aaaagtagta acggtggtaa tcacagggca acagaccaat cgactgcaag aaggggaatg
    24961 aaaaatctaa attggtaata tttttaacaa cctcctgatt ccctcttgag tcaccgtata
    25021 aagcttccat gacttcacca gtacgattct ggccagtctg atcccaaact tcatgaaaat
    25081 ggaaatggtt taatccaaca tgattggttt gaatcgattc ctcaggcaga ttcaaaagct
    25141 gagctgccgt ctttttctga ccaatcggaa tattgcataa gccaattacc ctgttccact
    25201 gcagttcatt aacaatcgct tccgttacta tgcctgcagg attggtaaaa ttaatcaacc
    25261 aagcatccgg acacagctct ttcatgtctg caatgatacc cttgtaggcc tctatagtcc
    25321 gaaatgcctt aaagatgccg cctgccccat tggtttcctg tccaagtaga ccatgactca
    25381 gaggaattgt ctcatcgata tagcgtgcct gtaactgacc aactcggaac tgagatgtca
    25441 caaagtctgc tcccttcaaa gcagcccttc gatccagtgt ctcctctgtt ttccagtcta
    25501 atccagcctt tctgaccatt cgacgtgcca aatcaacaac tatcttctgc ttctcagccc
    25561 cggcttcaac atctacaaac caccattccc gaatgggtag ttgctgatgc cgcaaaatca
    25621 tcccttcaac taactcagga gtatagctcg atccgccacc gagtgtgact aatttgattg
    25681 atttcacgac ctgttctcct tttttattca tatattctta ttatattcct gtttctacct
    25741 tttgtaaacg cgtacacttc ctgtcttttt ccgtaatata aaggaaactc ccctcaagac
    25801 agccaaaaac gacctccaat acggaagtcg ttttcttatt gtagttgctt attttaatga
    25861 tattgataag tttgattgtt tcaacagtct aagaatatac tgttgaggtt gggaaataca
    25921 gcaaatgaag tttgcatcaa aacagttcag tgaactgttg gaggttggag ataaacaaac
    25981 aaacgaggca atcgttactt ggtaacgata ttgacgagtt tgtttgcaac aacaatcacc
    26041 ttcaccactg tttgaccagc gatttcagct tggacttttt cgtctgcaag ggcaactttt
    26101 tcaagttcag ctggtgctag atctttggct acggtcaagc gggcttttac cttgcccttg
    26161 atttggacaa cgatttccac ttcgctttct actagcttgc tttcgtcata tgttggccat
    26221 gcgacatagc tgattgactg gcctgttgct tccagacctt gccagagttc ttctgccaag
    26281 tgtggtgcaa atggagcaat caattggaca aagcctttgg cgtattcgac gtagagcttg
    26341 tcttctttgt tggctgcgtt gacaaaaatc atgagctggg cgatagccgt gttgaatttc
    26401 aggtcttcaa tgtgctctgt caccgtcttc actgtttcat tgtagacttt atcaagcgct
    26461 ccgctatttt ccgaagaaat ttccttcgtt gtaattaggc ggtaaacgcg gtcaaggaac
    26521 ttacggctac cctcgagacc ttcttctgac caggcgattg acgcatcaag tgggcccatg
    26581 aacatctcgt aaacacggag ggtgtccgca ccgaactgct cgaccacatc atctgggtta
    26641 accacgtttt taagggactt agacatctta gcaggtgcct gctccaactc ttcaccagtt
    26701 tcgatgttga agaaagaacc atcacgtttt tcaactttat ctgttgctac aagggctcca
    26761 cggctgtcgc gatagctagt tcccaaaatc atcccttggt taaagagttt ttggaatggc
    26821 tctttagtcg gcacaacacc gaggtcgtaa aggaacttat gccagaagcg agcataaagc
    26881 aagtgaagga ctgcgtgctc agcaccaccg atgtagatgt ccactggcaa ccaagccttg
    26941 agaagctctt cgtctgccaa tttctcatcg ttgtgcgggt cgatgtagcg gaggtagtac
    27001 cagctagagc ccgcccattg tggcatggtg ttggtctcac ggcgacctct gacaccgtct
    27061 tcacgcacca cttccaacca gtctgtcaag ttagcaagcg gcgattcccc tgtacctgaa
    27121 ggcttgatgt ctgaggtttt tggcaatacc agaggtaact cattttctgg tactgctgtg
    27181 gaagtgccat cttcccagtg gatgattgga attggctcac cccaataacg ctgacggctg
    27241 aagagccagt cacggaggcg gtaagaaatt ttctcctgac cgacaccatt ttcttccagc
    27301 caagctacca tttgggcaat agcttcttcc ttgttaagac catctaggaa atcagaattg
    27361 atatgggcac catcctctgt gtaaggagct tcttctacat tgccaccttc cagaactgga
    27421 atgatgtcca agccaaactg cttggcaaat tcccagtcac gctcatcatg agcgggaacg
    27481 gccatgatag cacctgttcc gtaacttgcc agcacatagt ccgcaatcca gattggaatt
    27541 tctttgttat taacagggtt gatggcatag gcaccagtcc aaacacctgt cttgtctttt
    27601 gccaaatctg tacgggctag gtctgatttg agagaggctt ggcgtttgta ctctgccaca
    27661 gcttctgctt gttcagctga tgtgatacta tctaccaagt catgctcagg ggcaagaact
    27721 gcgtaggtgg caccgaaaag ggtgtcagga cgagttgtaa agactgtgaa gtccttgtct
    27781 gtgtccttaa tcttgaaagt cacattggca cccgttgact taccgatcca attgcgttgc
    27841 atatccttga tagactctgg ccaatcaact tcttctaggt cgttgagcag acgttctgca
    27901 taggcagtga ttttcaacat ccattgacgc attggtttgc ggacaactgg ataaccacca
    27961 cgttcagatg ttccgtcagg aaggacctct tcgttggcga tagctgttcc taattcctct
    28021 acccagttta caggcacttc tgcctcgtag gcgaggcctt tttcatataa cttggtgaaa
    28081 atccactggg tccacttgta gtagttaggg tcagtcgtgt tgacctcgcg gtcccagtcg
    28141 taagaaaagc caagggcatt aatctgacgc ttgaagttgg caatattttc cgctgtaaag
    28201 tcagctgggt cattgcccgt atccatagcg tattgctcag ctggtagacc aaaggcatcc
    28261 caacccattg ggtgcaggac gttgtagcct tgggcacgct tgtaacggct gagaatgtcc
    28321 gtcgccgtat agccctcagg gtgaccaacg tgcaagcccg caccagacgg ataagggaac
    28381 atatctaggg cgtaaaagtt tggcttgtcc gcatctgttc ccgtcttaaa agtatgattt
    28441 tttgcccaaa attcctgcca tttgggctcg atttccttgt gattgtagaa gctcatgtca
    28501 tttctccatg tcaataaatt atctttacta ttatatcacg aaataaggaa agaaaaaagc
    28561 aggataatca atcctgcacg tcatacgcat gaaaaatttc cgaaaaattt cttctctcct
    28621 tttgtccccg gaaataactg ctttaaactt agtatctacc tttatacaag caccttatcc
    28681 tcgatgtcca aataattgtg gcaaataatc ctccaaatgg acagaaatat agcgttgttt
    28741 acgccgataa ctcaacttct ccttagggaa tgtcatagtc tgtaaaagat gaagacaagc
    28801 cttacgaata gcgttcagat tgaaggccgc tcgtttatct aaggtttggt tcttatcttc
    28861 tcggtaaacc acatctaaca accaatgtag gctctcaacc gaccaatgac cgcaaacaac
    28921 ctgagaaaaa gtccgcacat cacccttgaa actgaggata aagtatcgaa cttcttccgt
    28981 gatgataccg tctttatcaa tggtattctt agccatacca attccacgaa gtttttccat
    29041 ttcgaatatc gttggctcaa ccatttcaca tcgtaacaac actcttacga agggctagct
    29101 gatgcaagag gcggggaatg gctgtgattt cattactttt atcctcaaca gcgacctgtc
    29161 attacctcca tcataggcag tgacaatatg agtagggatt ggtgttttcc tcggttcccc
    29221 cgaatcgttt ttccgtcaac ggcaatcaat ttggaaaaat cagttgcttc agaagagact
    29281 tcaaaggaca gtttcagttc ctttaagaaa tctggattga ccatactcac aacacgttcc
    29341 aaagtgtcat gagaaggaca gccgacactc aagtcaacgt attctcccaa gacagattcg
    29401 ttcatttcta tgaaatcttc catctctttc cacgtttcaa tccctgccaa ctgacaagcg
    29461 aaaactagaa agagaatagt agataaagga tagcggattt tccatgcttg acggctatca
    29521 taatcttctt tgtgctcttc tatggataga agaaaatcaa tcaaagtagt tcacctctat
    29581 tctagtgtac tactttgatt gatgtttggt tatgattttt gctttctgaa aacgaaattt
    29641 tcttcatgcg tttggcgtgg tatgatgatt atgggatgtt cggtttttgc tgtttggctg
    29701 caaaatattt ttgcagtaag gccttgaccg tttcttcgtt tgtctcagat aatggttgaa
    29761 tattaccata atctgtactt aatagataag cattatcaaa gaaaactgta tcaaatgaat
    29821 tattattttc tttatagtag aaaagtgact ctcccaagaa atagttgggc tcagaaatat
    29881 ccatataatc taatagagtc ggtacaaggt ctagagagtt tctgccctca acatcctttt
    29941 gctctgcccc aattccttta tgatagacta taaacgggac cctatcaaca tcttggtttt
    30001 cacgattgta ggacggatag gctgctttaa aatctttatc agcaaaggtt gcatggtctg
    30061 ctgtaaagac caatatcgta ttatcgaagg ctggattact agtaaatttt tctagaaact
    30121 gactaaaata ataatcaaag ttatagaaac gattgaagag aatatttttt ccatcttcaa
    30181 acatcttatc agctgaatca aaggtcatat gggtaccata agtatagatt gctgttaaga
    30241 atggagtctt tttggaaacc tggttctcta tggtatcata taacaattct aatgcagctt
    30301 ggtctgttaa acttccatta ggtccttctg ccaaatcatt ttcgttgaca atggtatcaa
    30361 aattaaaact ttccaaataa gatgtaaact gggtattgtt cggctctgta ttgataaagg
    30421 ttgtctgata acccttatct cccaacactc cctgcaagga agtcaaggtg ttagattcat
    30481 agttatctag ctgatagcct gaatagagct gaccaatcaa gcctctatag gtagcaaagg
    30541 tatgattata ataattttcg aaagtgaggg aagactcttg gaacttcttc aagttcggca
    30601 taatctctcg ctcatcttct acaatgtttt gtgacaatcc ctctacaaaa atcagaacaa
    30661 cattgggtgt agccgataaa ctatctggtt ttggacgtgc attctgtatc gtatttctgt
    30721 agaaatagtc cgtaacattt ggagcattag caattttagc taggtcttgt tgatattcat
    30781 atgcatcagc cgccaactga tacacaccaa aaattggcga atagatattt ccactcatta
    30841 aggtcacgat taactcaacc aagagagaac tcgacaaaac cgttgaacat ttaatttttt
    30901 ccgctcttag ataggtaatt ggtaaaaatg taaaaatcag tatgcaaatt attccaaaca
    30961 atatggaagc aaaacgccca gacaaggatt ctagcgattc aagattggtc accatcacca
    31021 aagttgtaaa acttccgcca aaaaagagga cactattctg cacattgaca atcaataaca
    31081 gaagactatt cgcaatatag gctgtaagct ttttttcctt tagcaaaaga ttgctaaaag
    31141 tcgcaatgct tgtaacctcc aacatagtaa caagaatata ggtccagtcc ttatggttct
    31201 taaaccccat gatggacaga agaacagcaa aaagatactt actcaacaag acatagagag
    31261 cgtattcttt tataagccgt ttatatgtag ttatcatttc aatttattct cctatcgaat
    31321 atagcagtat ttctttattt gttccttctt catcactgtc tgtactcatt tgtaaatcct
    31381 aacctcatca tttagacact attttctcac accgacttta tcaatgttaa gtgtaagtaa
    31441 aagtaaaaca gtaggagaca tgctgtactt tgtagcgtaa aaccaataat ttgaagaaat
    31501 gttcttttat agaagacaga aaccgttcca cttttagtca catatagttg ctcgtccatc
    31561 atataatgct ttctgcgtga catttggttt atgcttttct ttatattgtt gcagttctgt
    31621 cttgcttagg ggaacataag ctatcacggg ttgcgtccct ttcacacctg ctgaatattc
    31681 agcaacatat cccttgtacc aaatcctcgg taagactaac tctccactct ccccttcttg
    31741 actcaaccgt acatcaaaca tgagaaggtt atagccttga cgtacatttt ctacactaac
    31801 ctgctgggta tcatatacaa aatgattgat ggtgccattc tggacatgct tgtggctaat
    31861 atctagatta aaatattcat tacccgatgc tcaataagtt gttatgaaat gccttatccg
    31921 ccatttcgtt gtatcgtttc atcacagtat ggtttgtcgc tgtcagattg tatttctctt
    31981 tgaaagtagc cacctgaggc aaaaaactca agggatttgt caccaaataa aagcctatct
    32041 gcactaccga aactaccttg tatagtcgtt ttttctctgc taaaaacaga gcagtaagga
    32101 caaaggctgg taagaagtag gctagtcgac cagtatactg aaagactgct agaaaagtat
    32161 agcgaagagc cgtaaaccaa ggcaagatat ctgaagtaga aaccagcaaa attgttgagg
    32221 tcaagagtag gtaacgagac attttgggcg aggatttata tgcaactcag gcaatgacca
    32281 gaaaaactag actcaaagga aaatagtatt tcacaatgat ctctggtagg ttccctgctt
    32341 ctaaaatgtt ttttgactta aatggggacc tctaaaaact aattttctaa tttaaatgtt
    32401 gatttaacaa ggttttcgta actccaaatt cgcaattttg ggagttttta gaggtcccca
    32461 aatggataat cacgtaagcc ccaagataca aagaaggttt gcgacagtct ttgttccaca
    32521 aattgcaaga taaaaccaat agacagcccg agtactagca caaccgataa agcaaacgag
    32581 gtgttttttt caaggtcaat ttatttacca agagtaagac cagtatgatg gaagaaatgg
    32641 ctaatactag ttatgggttt gaaccatcag tgcaatgata atacctaatg ggactggatt
    32701 gtacttatcc tgaaaaacca ctttgtatat acaatatatc aacggcgcaa tcaagggaga
    32761 aattgcgctc atgccaaaac caaaataggg aaagactact gacattgtca tgccatacca
    32821 tagtgacttg gttttatttt gagtcatctt gcaaagacta aaataagatg tggtagctgt
    32881 agcccacatt atgataaagg cataacttgc aaaagcatgg gtaccaacct tggttaatag
    32941 ataaaccaag gctagaatgt agagaatacc gttgccatag aacatgggaa ccgcataacc
    33001 tgagccatgc gtaaatagaa agtttaggct cagtaacaca tctccatttg caatggattg
    33061 agccaagcct actatcctag ccatatgaaa tggatagtca tagattggac tgtttgtgtt
    33121 gatggagata taggaaatga ctgctatcag caatgcataa acaaatagtg ttaagtaagg
    33181 gttgcgacag aaaatattct gccttgtctg actcaattct tttgtattca tcatttctct
    33241 tttttatcct acttgccgac cctcttagcc aacatgcgct gaataatata tctgatagct
    33301 cttaacggac caatgacaat atatttgagt gcacctttta ttcctccgat atgatcaaag
    33361 tttacatagg tgtgaggcag agcatctgct cgctcattga gcaatttatt atcaataaaa
    33421 gctgtcaagt cattgggatt tttcacaata cggaaatcat agtttttatc ccaagcaatg
    33481 tagaccagta atcgttcgat ggcatgtaaa atagaatttt gaggcagggg ctctgctggc
    33541 acatctgcat cggttaggtt caaatcaaag agcgcttgta aagcatcgta tttaaaccat
    33601 acataagttc cgtaggacat cacaaaagta tgaagagcat taaaatctat ctgcttctgc
    33661 attcccattt tttgccataa ttcattcatg gctggagcaa tcctattctc attataggca
    33721 tcgactattt tattataacg gaaaaaggtt gggatatctg caatcactag ccctaaatca
    33781 gactgttgtt ccaaattggc cagaatatca ttcgctggtt ctaccaacat agctattagc
    33841 tctttccgcc aagattctcc cgcccagaag tctgcttctt tggatttttt tgtatggaaa
    33901 tgtccgacat aggtataggt ctgtaattgc tccttcaatt tcaacatagg taacacatcg
    33961 cgaccaatat ttcctgttac aaaaatctga gcctggcttc cattttcaga caacaaagcc
    34021 tctatctcag ctaccttatt ttcttggtct gttgtgatga acaagtcgta actaaaatta
    34081 aaggagtcga aagctgttaa aaattcctgt aagatgtcta catagaaaac atgcagatgg
    34141 atggctattc ttccatcatt agaataagga ttttgagttg atttaaggta tttctgtgcc
    34201 aagaggtatt taaaatccgg caggttaatc tttgacatgt gtgaaacgat taaatcaact
    34261 ggataatctg atttttccgc aatctcttgt aatatatagg gtgtaatatg ttgattccca
    34321 tcaatggttt taactttaat gaatggtact cgatgtttta aaatagccgt cggattgtag
    34381 taagaaaaat ctggatgaag catcccgcta gtatcttctt ctactgtgtt aaagaccgcc
    34441 tgataacgaa aacctgcttc aagtaggttt gttgtaactt gcgtttcata atggtcaata
    34501 acatcctgga cattagtaaa gttttgtaca cttttccaaa attcttgaaa ggctgctgat
    34561 tgaactacct tatttgaaaa ggtcaggtag tagctttgaa tatgctcacg aaactgtttg
    34621 gtttctcgga aattggtcat tccccaaaaa tctactgttt catctacttc atatcgctga
    34681 taaagctctg acatatccca caatggtcca aaacaggtgt cattcattag ggttagtgaa
    34741 tcgtagtgct ttagctcctc gaaacctatg cttgtcatcc catcacgcca agccgcaaaa
    34801 tcaaagccaa tattctctcg acgaataact tcatctacca aataagattg tctaagtaca
    34861 gtttcatcct ctgctgaaaa tggactattg ctgataaaga caatctttga gaagagcggg
    34921 cgcatagctt ccaattggta ttgaacatgg gaactgagct gcccatattt attgaaatga
    34981 acatacaaaa gcaaacgctt cattgttttc tcctaaaaaa attaataatc tttgttggaa
    35041 taatccaacg tcgtgaacca acaactgaat tatacatagc agtgagtttt tctatctctt
    35101 tttgttgttg attaagaagg acttctgttt cacgaaattg ctgctctatg cgctctcctt
    35161 ccaaggcttt ctcttgtaac tcaactagct gctctcctaa caccttggct acataatctg
    35221 gtgattgaag gtcatccaat tcacatgctg aatatttcaa agtaaattca gttccataaa
    35281 aagaggagat ttcatagatt aattgcggat cttgttgcgg aaatagaacc atgtccccaa
    35341 ctaatattcc attagtatag acaggaagta agcttgtttg attcttttgg ctaagcaatg
    35401 aaacattgct ataaaagctt ggttgttctg acaaatcaat gcgcactctt tggcagttat
    35461 caggcaagct aaatcgaagc tcatcatgct tcaacaaagg atagcgaagt gtattttctt
    35521 gacaaaattc agacccttcc ttgtcgaaat agatggtaac ttcttgaatg ccaacttgcg
    35581 caagaccgcg ttcttttttg gttaaaacaa gttcataagt gttatttcgt tccaaaagaa
    35641 tgtcgatcat ttctcgatag tgactagctg ggtatttgtc tagatagaat ttctgagtct
    35701 ccaacaaggt ttggaagcga ttctctattt tagcaaagtc gaccggtcgt gagtcagagc
    35761 cctggttaat cgtataggca actgttgctt ctggtaaaaa cagcaactgt gttcgttgaa
    35821 ataaatcgag ctgtaaatta aaggtatcat cagcagtagt caaatccagc tcctgattaa
    35881 cctctaacat cagttctctt tctactaacc aggtcgaagc catggtaaac ccacgtgtcg
    35941 ctaacatttt agcataggta tccgctaatg gaatactccc actagcaaaa cctgctctgg
    36001 acaccaactg tccatcctca tcataaatat caaaatctgt atttgaccac ttagcttccg
    36061 gatgtccttc tagtaagtcc acctgttttt gaagtttatg tgggtctaac caaaaatcat
    36121 ctccatcaca acgagcaatg tatttgccct tagcttgcaa acaagcagat acccaggttc
    36181 gcgaaattcc ttgattctct tcatttaaaa tcatttgaat cttttctgga tattgttttt
    36241 gatacgatag gataatatct ctggatgagt cggttgaata gtcatcgaca aggataattt
    36301 cgacttcaaa atttgtttct tgtgctagaa aaccttcaat aaccctttcc aaccacggcg
    36361 ccttgttata taccgtacaa atgattgata ctgtcggttg tcccatcatt catcctctat
    36421 ctagttattt gtaaaagtcc agctaccatt tcgctgaatg agaccacttg ctgaatctaa
    36481 agcagaaaaa tcatctggtg caatatctgt tcgattcacc ataataatcg gcgtctgcgt
    36541 cgcatccgaa aaagccaaca ttttcccatc tttatcgcga accgtaactt ctagcttcaa
    36601 ttttaaatca ttaacattag gcaaagaaca agagtaatgc actacctttt tcccttttcc
    36661 tgtttggagt tgattcattg aattgtcatt ataaatccaa atattacgat caatgtctgt
    36721 cagagataag gccatgtagg tctcaatatc ttgtaaaaca gtgtactcca tcttaaaatg
    36781 aatggcatct ttaggggaaa tctgttttgg gcttaataaa tccaacttaa aattctcaac
    36841 caactgcact tcttttgctt ctgcggattc agaatctacg cctttggctt cctctaaatt
    36901 ttcttgttga actgttatag tattatcaaa actatattga ttagccacat tttctgggtt
    36961 tccaatagcc tttaccaagc catgttcaat taggactgcc ttattacaat atttcttaac
    37021 tgcacccata tcatgggtaa ccagaatggt tgtcttacca cttttctttc gttcttggaa
    37081 ataatcgtta cattttcttt ggaaggcttc atcgcccacc gccaacactt catccaatat
    37141 gagaacgtct ccttgtgcct tgatggctac agaaaacgct agacgaacct gcatcccgct
    37201 agaatagttt tttagttttt ggttcatgaa ttcgcgtaat tctgcaaaat cgacgatatc
    37261 atcatacatg gcatcaattt cttcacgtga aaaaccaaga agagccccat ttaggtacac
    37321 attctcacgc cctgttaatt caggattgaa accaactcca agttcaataa aggaaaccaa
    37381 cttcccattt actgtcactg tcccgtgttc tggaacataa atctgtgaaa taatttttaa
    37441 aagcgttgat ttacctgatc catttcgacc aagaatcccg aaaaagtctc ctttttccac
    37501 ttcaaaagaa atatccttga gaacgtgttg ttccttgtag cctttaatcc ctctaaatcg
    37561 gttgaccatg gtcgttcgca agctttgtgt agcctctgtc ggcaatttga aaaacttgct
    37621 gacatgatct acttttactg caatattatt ttctgtcatt agagaatctc cgcaaatttc
    37681 ttagaatgtt tgttgaatac ccgaacacca attacaaaga caagaactgg aatcaggtat
    37741 ggaatcagca caatagcctt gttgttaatg acctgccata ctggtaaatt agctctgtca
    37801 ataacaaaat agcgcatatc ttgaataatt tgagccattg ggttaagcat aattagcttt
    37861 gcagctaaaa cgctttgatt catgacaaag gatagagaat agatgattgg cgttgcatac
    37921 atcccagcct gcatcaccac ttcccaaatt tgtgctaaat cacggaaacg aacaaagaga
    37981 gtagagagta tcaaggcaat ccctgtcgcc aacaaaaata gctcgacaaa aagagggaga
    38041 gccatcacga ctgaccatgt gaactgtacg ccattaaata aggaaaaaat caaaacaacc
    38101 aataaattga tagagaagtt gattgctgcc ccaaatactg acgagagtac gataatttcc
    38161 ttagagaagt ttaacttacg caataaatca ccccgtgtga cgatagaaac cattcccata
    38221 ttagtggcct ctgaaaagaa ggaccagata acatttccta acaataaggc gaccggaaaa
    38281 tgcggaacgt cactacctaa tcttagaaag tgaataaaaa caacatacat aatagcaaac
    38341 aacatcaagg gctttagaat tgaccaaaga tagccaatta cagaaccttg atagcgtaat
    38401 ttaaagtctg ttttaatcaa ttcttttaat agaattcgat tttttgtgga aaataaatcc
    38461 ataccttttt cctttcgatt ataacagttc tataaaatcc tatccctctg agaaaaatac
    38521 ttctcaattc ccactataga acaagttttt ctaaagcgaa ctcactacat tatacactta
    38581 attaacgctg cttgcaatat aacactgtcg ctagttatgc actccgtacg catacctttt
    38641 caaattcctt aagtatctca tgctggcttc cactgtaacg gaacttaagc caaagcattt
    38701 tccagtgagg gcttttattt gctcttttcg gaaaaatatg gagaacagac cttttaaatt
    38761 aagcacgata aaaaccagtt aaaatactac tacggttttc aactggtttt atcgttcatt
    38821 attagatttc ctcagctaaa atggccagtg ggaattaatt ttaaaattag tcagttacag
    38881 accgtttcca gtatagatgc aaatatgaat ccgccttacc ccaacactta ttcatagcaa
    38941 attgttgcga tgccactacc ttggcggaac ttcttctcaa agtcatctga tacaatattc
    39001 tgactacaat tatttggact aatagaggca ctttgagatt gaaattcata aaaaaattct
    39061 ctcaagtccg actgataaat acctttaaaa gatgctgcct cctctttata aatttcttct
    39121 ctaataatat tttctataca ctcaaaccag tcagcccttg acctgaaaat aaagactggc
    39181 ttttcgtccc ctttatcagt ctcactatag tacttggcaa ttcgagttaa gatgatagcg
    39241 gcaacaaagt gcttatagg
//
LOCUS       DASGAC010000004        35692 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.004, whole genome shotgun sequence.
ACCESSION   DASGAC010000004 DASGAC010000000
VERSION     DASGAC010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 35692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35692
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.004"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            30..1820
                     /locus_tag="U1335_000159"
     CDS             30..1820
                     /locus_tag="U1335_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM5230678.1"
                     /translation="MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPSEVKQ
                     DGTAVADAQLKYAFVSATTSSGLLIDELTENTTDSTFGGMVDISMFGYDGDRKLDDSG
                     LAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDKFLN
                     IVGMDEFVAGTASDISGLKKIDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIP
                     VADWEKSEYSRTAKLVGMGPWKIKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSP
                     DTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYISFNFGKYDESAKKN
                     VMDESAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSLIISFFGDIHDSELEGYS
                     YDPEKAKKLLEEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKE
                     VGLNVELYTGRTVEGKSFYNSVQANDAAIDMYAGGWSTGYDPNPTGLWGPIAAFNMSR
                     FVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESITALNKRVK
                     NYDSNYGSASEKGIAFENIELTADKGVAAE"
     gene            2198..3196
                     /locus_tag="U1335_000160"
     CDS             2198..3196
                     /locus_tag="U1335_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5230679.1"
                     /translation="MATEKPLLDIKDLHVGFRIGDDYFDAVDGVDISLQKNEILAIVG
                     ESGCGKSTLATTIMGLHNPLNTKITGSIQYNDMELIGMDEAKYNTVRGNDIGMIFQDP
                     LASLNPLMTIGAQIDEALFYHTDLDANARTERVLELLAQVGIPNPKRTFKQYPHELSG
                     GMRQRIIIAMALSCKPPIIIADEPTTALDVTIQAQILDLLNDIQAETGSGIILITHDL
                     GVVAETADRVAVMYGGQFVEVAPVKELFTNPKHPYTRSLLKSNPQSGSEGGNLHVIEG
                     IVPPITKMVRKGCRFAPRIPWIGAEAHEENPSMHEVGPNHFVRCTCHETFYFEGEA"
     gene            3199..4140
                     /locus_tag="U1335_000161"
     CDS             3199..4140
                     /locus_tag="U1335_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5230680.1"
                     /translation="MGFIEVKDLKVHYPIRSGFFNRVTDHVYAVDGVNIEFEEGKTYG
                     LVGESGSGKSTIGKAIIGLERATSGQIIYEGQNVTNKSRGKKGNFNRDVQMIFQDSLS
                     SFNPKKRILDIIAEPIRNFDRLSPDEEKKKVLQLLDTIGLNEEALIKYPHEFSGGQRQ
                     RIGVARALASNPRLIIADEPVSALDLSVQAQVLNYMKRIQDEFKLSYLFISHDLGVVQ
                     HMCDELFIMYRGRFVETGNKNDIYNNPQHIYTKRLLSAIPTIDPVNRLKNKEKRLAAE
                     KEYQEMQGQYYDENGRVYDLRSFSETHQVALPEGGQN"
     gene            4142..5098
                     /locus_tag="U1335_000162"
     CDS             4142..5098
                     /locus_tag="U1335_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010750774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5230681.1"
                     /translation="MWKTVLRRLLMMIPQIIILSVIAFFVAKMMPGDPFTGLIDPNID
                     PAIIEQKRIAAGYYDPIPVQYFRWVGNLLQGDFGQSVIFKQPVVDVIMQRLNNTIWLS
                     LLTMVLTYLIALPLGMIAGRYQNSLADKIIGVYNFLTFSTPTFVFAILMLWMFGFSLG
                     WFPTRGSIDGGVEGFAAILSRLHHMILPAITMAILSTTVTIQYLRTGIIDAKSQDYVR
                     TARAKGVPERVVYNRHIFRNSILPIASFLGYELTGLIGGSIFIENIFTYPGIGQLFYN
                     SISSRDYSVILALLLIFGMGTLLGTLISDIIMSIVDPRIRVK"
     gene            5112..6014
                     /locus_tag="U1335_000163"
     CDS             5112..6014
                     /locus_tag="U1335_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5230682.1"
                     /translation="MSKENKKQVQSASTPPGGFRVIAREFMKDRLALTSLIILVTVLL
                     AVFIGALLLDQEQVMKVNLLGRYLEPGVNGYILGTDEGGKDIFGQLIIGARNSIIIGF
                     TITIITSIVGISIGLISGYYGGRLDGFLMRIVDFIMILPVTMLIIVFVTVIKNYTIYH
                     FILIMSAFYWTAKARLFRTRTLSEASLDYVNASKTLGTSDFMIMFREILPNLSSLIIV
                     NLTLNFAGNIGIETSLTYLGFGLPSTVPSLGTLIANARNADILENKTWIWLPAAIFIL
                     VMMLCINYVGQAFQRAADAKQRLG"
     gene            6136..6501
                     /locus_tag="U1335_000164"
     CDS             6136..6501
                     /locus_tag="U1335_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018365170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HEM5230683.1"
                     /translation="MTVKINTKDGQIELTDDVIATVVGGATTEIFGVVGMASKSAIKD
                     NFQALLRKENYSKGVVIKTLEDGRIAVDVYTVMSYGVKISEVSRNIQERVKFNLENQL
                     GISVDAVNVFIQNIKVVGE"
     gene            6504..8168
                     /locus_tag="U1335_000165"
     CDS             6504..8168
                     /locus_tag="U1335_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DAK2 domain-containing protein"
                     /protein_id="HEM5230684.1"
                     /translation="MSKITTSLFQEMVQAASTRLNKQAEYVNSLNVFPVPDGDTGTNM
                     GMTITNGAKEVADKSASTVGEVAQILSKGLLMGARGNSGVITSQLFRGFGQSVKGKVE
                     LDGKDLAQAFQHGVEVAYKAVMKPVEGTILTVSRGAATAALKKAEETDDAVEVMRATL
                     DGANRALKKTPEMLPVLKEVGVVDSGGQGLVYIYEGFLSALTGEYIASEDFEATPAVM
                     SEMINAEHHKSVAGHVATEDITFGYCTEIMVALRQGPTYVKDFDYEEFRDYLNDLGDS
                     LLVVNDDEIVKVHVHTEDPGLVMQAGLQYGSLVKVKVDNMREQHEAQVEKEESFQKPA
                     EQKEYAIIAVAAGEGLTEIFKSQGVDYVISGGQTMNPSTEDFVNAIELVNARNVILLP
                     NNKNILMAAQTAAEVAEVAVKVVETKTLPQGFTSLLAFDPSRDLESNFEAMTASLAEV
                     KSGSVTTAVRDTTIDGLEIHENDNLGMVDGKIVVSNPDMMETLVATFEKMLDEDSEIV
                     TIYIGEDGDEELAQTLAEQLEEQFEDVEVEIHQGNQPVYPYLFSVE"
     gene            8233..8709
                     /gene="tsaE"
                     /locus_tag="U1335_000166"
     CDS             8233..8709
                     /gene="tsaE"
                     /locus_tag="U1335_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEM5230685.1"
                     /translation="MTNYWGYGIIKDMYSQNENELIAIGERIGKACKPNQVLVLSGDL
                     GAGKTTLTKGLAKGLKIEQMIKSPTYTIVREYEGTMPLYHLDVYRIGDDPDSIDLDDF
                     LYGGGLTVIEWGELLDVSLFDDYLLIRIEKEGDGRRLTVESHGAQSSDLAKEFQNV"
     gene            8702..9229
                     /locus_tag="U1335_000167"
     CDS             8702..9229
                     /locus_tag="U1335_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5230686.1"
                     /translation="MSEKEVYFSEAEPADAAAFIDFMNQVARETDYLVMDETGFRFSV
                     DEMETIFEAGIENPRELCLLAKVGSEVVGAISVKSSKQFRISHIGNIFIAVKKAYWGH
                     GLGTILLEEVLHWVEEMDVLKRLELTVQVRNEAAVHLYQKLGFNIEGTQIRGARTDEG
                     EWLDLYYMGKLIGEV"
     gene            9226..10419
                     /locus_tag="U1335_000168"
     CDS             9226..10419
                     /locus_tag="U1335_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM5230687.1"
                     /translation="MTIGKKIFLMSLAIVGLTLGAGLIYGASLLNFSTGTISKTYKQL
                     DGEKEITPIDAIEPLTILLMGVDMDQATRGGDWEGGRSDSMILVTVNPKTKETNMMSL
                     TRDIMVEIAEANGESSGTVEKLNHSYSYGQAPMAIATIEKMMDITIDRYIEINMDGLV
                     ELVDAVGGIEVNNTLGFPISISEHEPAYTSIVQPGQQLVNGEQALVYARMRYDDPEGD
                     IGRQRRQREVITAIIKKLLQLDGFTQYKKILTAISNNMRTNIEISPATIPNLLGYKDS
                     VSKLNSYQLRGVDQMVDAIYYQLPTSEHLLEMQNILKKSIGLEENTGLVTNVKVYEGQ
                     MGLPSPINVYDVYTNLLLLEASPWAESLDPEIGSPSATTTVTTEEQVTDFSTEPVLGD
                     ENGSQ"
     gene            complement(10829..11164)
                     /locus_tag="U1335_000169"
     CDS             complement(10829..11164)
                     /locus_tag="U1335_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEM5230688.1"
                     /translation="MKLRNIILAVSAATASFLAVTHRDKIAKEVQETKQLLSDIQLSK
                     DNIQEQLAIIQSFQEPLQEMASDLQYKTRVYQQSIAGNLEEIQQILKKYQNENSTRLG
                     KKPSTASQS"
     gene            complement(11166..11579)
                     /locus_tag="U1335_000170"
     CDS             complement(11166..11579)
                     /locus_tag="U1335_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEM5230689.1"
                     /translation="MSDCIFCKIISGEIPASKVYEDDQVLAFLDITQVTKGHTLVVPK
                     EHYRNVLDMDKDAAATLFSVVPTIARQLKEKLGASGLNIVNNNEESAGQTVFHTHFHL
                     LPRFNNQDGLSIQFKANDPDFPALAQLAQELYLGE"
     gene            11642..12376
                     /locus_tag="U1335_000171"
     CDS             11642..12376
                     /locus_tag="U1335_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5230690.1"
                     /translation="MLEVKNVTGGYVNIPVLKDVSFTVEDGKLVGLIGLNGAGKSTTI
                     KEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIPETPSLYEELTLKEHLEVVAMAY
                     DLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
                     LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEE
                     LQSAFGMDGASLNEIYLALTQEGVVG"
     gene            12373..13413
                     /locus_tag="U1335_000172"
     CDS             12373..13413
                     /locus_tag="U1335_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5230691.1"
                     /translation="MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYR
                     QLLLSFPENPLPIVFVVIAISLLVLVSGRIATYLEEADQIFLLTKEKDILQGLEVAAR
                     RTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVAGLLTLLVLKCLFVKRQLVAYQSQGV
                     LDWSKAIPDEQKRKQSILRFFALFTTVKGISTTVKPRGYLNGILRLVKSRQTWFYLYL
                     RAFLRSGDYLGLTIRLLLLAILSLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQ
                     YITQLYPLEKDSKKIGLQNLLRVILYSLLLVELGFALLFSKENAMVVVLLLVGIFLHE
                     IYLPLKLKKLID"
     gene            13463..14257
                     /locus_tag="U1335_000173"
     CDS             13463..14257
                     /locus_tag="U1335_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HEM5230692.1"
                     /translation="MQFDTSGLQLQSIAGNSGKAFKGLRSDGTPVFVKYEMPPIVSAL
                     AREQITPPVLSANREVGMGHRVEQEWLNGRTLERQDMTSKQIRQILVRMHYSRILLNQ
                     ALQMNYTYMEPQDLVYRWQKEAPTRLGQNSYLQSICQDLLNNLPRFRQEVATFVHGDL
                     HHSNWVETTSGLVYLTDWETACVTDRMLDVAYILTHYIPRQSWEEWLRAYGYKYNSTV
                     LNKVYWYGQLGYLNQIAKHVESYNVLAANKEIYALRQFRQSFYKEV"
     gene            14254..14892
                     /gene="trmB"
                     /locus_tag="U1335_000174"
     CDS             14254..14892
                     /gene="trmB"
                     /locus_tag="U1335_000174"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001239380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEM5230693.1"
                     /translation="MRVRNRKGASELLANNPQYVISNPEECKGKWAEIFGNNNPIHIE
                     VGSGKGRFVTGMAAQNPDINYIGIDIQMTVLSYALDRVLEAGLPNIKLLRVDGSSLTN
                     YFAPAEIDQLYLNFSDPWPKKRHEKRRLTYKSFLDTYKEILPEKGEIHFKTDNRGLFE
                     YSLASFSQYGMVLKQVWLDLHADGLEGNVMTEYEEKFSNKGQVIYRVEAQFQ"
     gene            15146..15616
                     /gene="rimP"
                     /locus_tag="U1335_000175"
     CDS             15146..15616
                     /gene="rimP"
                     /locus_tag="U1335_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEM5230694.1"
                     /translation="MSSIIELVTAAITPAIQTPYELVDVEYGKMGGDYVLSIFVDKEG
                     GISLQDTADLSEKISPILDTIKPDPFPDQYMLEVTSPGLERPLKTADAVEKAVGKYIH
                     VKLYQAIDKIKVFEGTLLSFDGTNLIMEYMDKTRKKEVTIPYQTVAKARLAVKL"
     gene            15690..16832
                     /gene="nusA"
                     /locus_tag="U1335_000176"
     CDS             15690..16832
                     /gene="nusA"
                     /locus_tag="U1335_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HEM5230695.1"
                     /translation="MSKEMLEAFRILEEDMGINKADIIDAVTESLRSAYKRRYGQSES
                     AVIEFDEKKGDFHVFTVREVVDEVFDSRLEISLKDALAISSAYEMGDKIKFQEDPAEF
                     GRVAAQSAKQTIMEKMRKQKRAITFNTYKQHENEIMSGTVERFDNRFIYVNLGTIEAQ
                     LSKQDQIPGEVFQSHDRIEVYVYKVEDNGRGVNVFVSRSHPEMIKRLMEQEIPEVYDG
                     TVEIMSVAREAGDRTKVAVRSHNPNVDAIGTIVGRGGSNIKKITSKFHPARYDAKNDR
                     MIPTEENIDVIEWVADEAEFIYNALAPAEVDQVLFDTEDGKHATVVVPDDKLSLAIGR
                     RGQNVRLAAHLTGFRIDIKSASEYEAFEATQYATDEVVEEVAEEQE"
     gene            16849..17145
                     /locus_tag="U1335_000177"
     CDS             16849..17145
                     /locus_tag="U1335_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006531117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HEM5230696.1"
                     /translation="MAKARKIPLRKSVVSGEIIDKRDLLRIVKNKEGQVFIDPTGKAN
                     GRGAYIKLDNDEASQAKKRRVFDRSFSMEVAEEFYDELIAYVDHKIKRRELGLE"
     gene            17102..17440
                     /locus_tag="U1335_000178"
     CDS             17102..17440
                     /locus_tag="U1335_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016399195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxQ-related RNA-binding protein"
                     /protein_id="HEM5230697.1"
                     /translation="MLIIRSRGENLDSNKRQKILNLLGLAQRAGRLVSGEDLVVEAIQ
                     KGQAKLVFLAEDAAGNLSKKVTDKSHTYQVEVVTVFSTLELSAAVGKARKVLAVTDAG
                     FTKKMRSIME"
     gene            17458..20280
                     /gene="infB"
                     /locus_tag="U1335_000179"
     CDS             17458..20280
                     /gene="infB"
                     /locus_tag="U1335_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEM5230698.1"
                     /translation="MSKKRLNEIARELGVSSKEVVAKAQELGFEVKSHASSVDEASAK
                     RLAESFGGQKSAATKVAAKVSQPEKVDETPKVETAKVEKAKETQPVVKEEVAASAVQS
                     APHRPQSRNFKAEREARAKEQAAKRAQGQGKGGQAKSGQDRRDNRQQGQGRSNNERND
                     RRDNRRDQRPEERKDNRFGDRRDNRANRRQDNRSGQSARFEQREAAKPAGPKIDFKAR
                     AAALKAEQNAEYARTSEERFRQAQEAKKQPKKPKEIKFEEPVVESKPFVKPAPVASVP
                     EQVAETTVDTRRKKQARPDKKRDFNSDEEDGPRKQQRNRNSQNQVRNQRTSNWNNNKK
                     NKKGKANQPAKPVTERKFHELPTEFEYTAGMTVAEIAKRIKREPAEIVKKLFLMGVMA
                     TQNQSLDGDTIELLMVDYGIEAKEKVEVDNADIERFFVEEGYLNEEEMTERPPVVTIM
                     GHVDHGKTTLLDTLRNSRVATGEAGGITQHIGAYQIEEAGKKITFLDTPGHAAFTSMR
                     ARGASVTDLTILVVAADDGVMPQTIEAINHSKAANVPIIVAINKIDKPGANPERVIGE
                     LAEHGVISTAWGGESEFVEISAKFNQNIDELLETVLLVAEIQELKADPTVRAIGTVIE
                     AHLDKGKGAVATLLVQQGTLNVQDPIVVGNTFGRVRAMTNDLGRRVKTAGPSTPVSIT
                     GLNETPMAGDHFAVYEDEKSARAAGEERAKRALLKQRQATQRVSLENLFDTLKAGEVK
                     SVNVIIKADVQGSVEALASSLQKIEVEGVRVNIVHSAVGAINESDITLAEASNALVIG
                     FNVRPTAEARSQAEADDVEVRLHSIIYKVIEEMEDAMKGMLDPEYEEKIIGEAIIRET
                     FKVSKVGTIGGFMVVRGKVTRDSSVRVIRDGVVVFDGKLASLKRYKDDVKEVGNAQEG
                     GLMIENYNDLKVDDTIEAYIMEEIKK"
     gene            20436..20789
                     /gene="rbfA"
                     /locus_tag="U1335_000180"
     CDS             20436..20789
                     /gene="rbfA"
                     /locus_tag="U1335_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEM5230699.1"
                     /translation="MANHFRTDRVGMEIKREVNEILQKKVRDPRVQGVTITDVQMVGD
                     LSMAKVYYTIMSNLASDNQKAQTGLEKATGTIKRELGRKLTLYKIPDLVFEKDQSIEY
                     GNKIDQMLRALEQKD"
     gene            21048..21719
                     /locus_tag="U1335_000181"
     CDS             21048..21719
                     /locus_tag="U1335_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin lysis protein"
                     /protein_id="HEM5230700.1"
                     /translation="MKTVISKLMLVSTVVLLAACQSNQVKGGESSSSSASSQVSDGSS
                     LQQASTIASSSETQASSVTTPELSEVYQSVIDRYQANMGQPAEAINQDEVSSYLSLLT
                     SQGQEYSGIFYSLYDVNHDGTEELLLALDKSGEYVLIDLYTQLADESLRLVDNFRNLG
                     FEIGPNALLRPLQDGTYLFEGAGVFRIYQYNAMIPGLKRISESDTNPETSPLLELKSL
                     HWVKL"
     gene            21888..23042
                     /locus_tag="U1335_000182"
     CDS             21888..23042
                     /locus_tag="U1335_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate-binding domain-containing protein"
                     /protein_id="HEM5230701.1"
                     /translation="MKTNLKKLLYSGVTLMSLGVLAACSSTSSSTTTSSSAATSQTSV
                     ATTSNNSTSSDSSSSTIDWSALPTTEVTLSNDGLKITEGGTYILTGSTTAGVTVETDA
                     NVRIILAGAEISSSDTAAINVINADNVELEIKDGTTNTVKDTSNHTDTNIEGAIHVEA
                     DLTITGNGSLTVEGNFQDGIVSTDDLVVNSGNITVTAVDDGIRGKDSLTINGGTINVT
                     AGGDGIKSTNDTDTTKGYTTITGGEITVKAGDDGIKAETALTIDGGTITVSESVEALE
                     GTNITINGGTLDVYGSDDAINAASTTSSDIYIKVTGGDLKVAVGSGDTDAFDANGDIY
                     ISGGTIDVTAQSAFDFDGTAELTGGTVTVNGEQITQIVATGPGAGGHGGW"
     gene            complement(23069..23728)
                     /locus_tag="U1335_000183"
     CDS             complement(23069..23728)
                     /locus_tag="U1335_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003072497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEM5230702.1"
                     /translation="MDFDFFLLICNYIGTIAFAVSGVIKGFKKKLDIFGISLLAIITA
                     VGGGMIRDTMLGKIPTALTEPSSIYLSIGVALMMYVIVISKKQDNPRDKQLYRYLSKV
                     NLTFDAIGLVIFALLGASAGIESHLNSMATGILASLTGVGGGIIRDLLVNETPSVLKE
                     DVYALLAFFAGLAYHILVVQLHFARIPSFIVCFAFFLLLRLLVIKYKLNLPNMDRTNK
                     T"
     gene            23960..24928
                     /locus_tag="U1335_000184"
     CDS             23960..24928
                     /locus_tag="U1335_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000258167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent dehydrogenase
                     E1 component subunit alpha"
                     /protein_id="HEM5230703.1"
                     /translation="MVSISKEQHLDMFLKMQQIRDVDMKLNKLVRRGFVQGMTHFSVG
                     EEAAAVGPIAGLTDEDIIFSHHRGHGHVIAKGIDINGMMAELAGKATGTSKGRGGSMH
                     LANVEKGNFGSNGIVGGGYALAVGAALTQQYLGTDNIVIAFSGDSATNEGSFHESMNL
                     AAVWNLPVIFFITNNRYGISTDISYSTKIPHLYQRAAAYGIPGHYVEDGNDVIAVYEK
                     MQEVIEYVRAGNGPAMVEVESYRWFGHSTADAGVYRTKEEVNEWKAKDPLKKYRKYLT
                     ENKIATDEELDAIEAQVAEQVEVSVKFAQESPDPDISVAYEDVFVD"
     gene            25422..26417
                     /locus_tag="U1335_000185"
     CDS             25422..26417
                     /locus_tag="U1335_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000005088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HEM5230704.1"
                     /translation="MAETKVMALREAINLAQSEEMRKDEKVFLMGEDVGIYGGDFGTS
                     VGMLDEFGPKRVRDTPISEAAIAGSAVGAAQTGLRPIVDLTFMDFITIALDAIVNQAA
                     KTNYMFGGGLKTPVTFRVASGSGIGSAAQHSQSLEAWLTHIPGIKVVAPGTANDAKGL
                     LKSSILDNNPVIFLEPKALYGKKEEVNLDPDFYIPLGKGEIKREGTDVTIISYGRMLE
                     RALKAAEEVAAEGISVEVVDPRTLIPLDKELIIESVKKTGKVILVNDAYKTGGFIGEI
                     ASIITESEAFDYLDAPIIRIASDDVPVPYANILENAVLPNVEKIKAAIYKQVNRG"
     gene            26901..28286
                     /locus_tag="U1335_000186"
     CDS             26901..28286
                     /locus_tag="U1335_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoamide acetyltransferase"
                     /protein_id="HEM5230705.1"
                     /translation="MAIEIIMPKLGVDMQEGEIIEWKKQEGDFVNEGDVILEMMSDKT
                     SMELEAEESGVLLKIVHGNGATVPVTEVIAYIGAEGETVEVGASSAPVTPAAAIEEVP
                     AGRTPVIVAPATAAKPQGGGKVRATPAARKLARELGIDLGLVPGTGANGRVHKVDVED
                     FKGAAPKATPLAARIAADQGVDLSTLTGSGVNGKIVKDDVLAVLAPAAVETAAPAPKT
                     EEKPAKELPEGVEIIKMSPMRKAISKGMVNSYLTAPTFTLNYDIDMTNLMALRKQVLE
                     PIMNKTGLKVTFTDLIGLAVVRTLMKEEHRYMNASLINDAQEIELHKFVNLGIAVGLD
                     DGLVVPVVHGADKMSLSDFVVASKDVIKKAQSGKLKGAEMSGSTFSITNLGMFGTKTF
                     NPIINQPNSAILGVASTVQTPVVIDGEIKIRPIMALCLTIDHRIVDGMNGAKFMVDLK
                     NLLENPLELLI"
     gene            28556..30316
                     /gene="lpdA"
                     /locus_tag="U1335_000187"
     CDS             28556..30316
                     /gene="lpdA"
                     /locus_tag="U1335_000187"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002984864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEM5230706.1"
                     /translation="MAIEIIMPKLGVDMQEGEIIEWKKQEGDFVNEGDVILEMMSDKT
                     SMELEAEESGVLLKIVHGNGATVPVTEVIAYLGAEGESVEVGSTPAPAEVAQATADLK
                     AAGLEVPAAPAATPQAPKAELAADEYDMVVVGGGPAGYYAAIRGAQLGGKIAIVEKSE
                     FGGTCLNKGCIPTKTYLKNAEILDGLKIAAERGINLASTNYTVDMDKTVDFKNKVVKT
                     LTGGVQGLLKANKVTIFNGLGQVNPDKTVVIGDKVIKGRSIILATGSKVSRINIPGID
                     SKLVLTSDDILDLREIPKSLTVMGGGVVGVELGLVYASYGTEVTVVEMADRIIPGMDR
                     EVSVELQKVLSKKGMKFLTSVGVSEIVEANNQLTIKLNDGSEIVSEKALLSIGRVPQL
                     AGLENLNLELDRGRIKVNEYQETSIPGIYAPGDVNGTKMLAHAAYRMGEVAAENAIHG
                     NHHKAKLDFTPAAVYTHPEIAMVGLTEDQAIEKYGKENILIGRNSFTGNGRAIASNEA
                     HGFVKVIADKKYHEILGVHIIGPVAAEMINEAATIMESELTVDDVAASIHGHPTFSEV
                     MYEAFLDVLGVAIHNPPKRK"
     gene            30553..31398
                     /locus_tag="U1335_000188"
     CDS             30553..31398
                     /locus_tag="U1335_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5230707.1"
                     /translation="MRKIIFLDVDGTLVDYHNRIPESAIRAIRLARENGHLVYVCTGR
                     SRAEMQPELWEIGLDGMIGGNGSYVEHQGQVIMHQLLSEEDSRAIVDWLHERGLEFYL
                     ESNNGLFASENFRERARETLRIYSMNKGKTAEEVATQEVEDVIHGMIFDGQLYRNDLN
                     KVSFVLDSYKDHLDSKQAFPQLVANTWGGRGESALFGDLGVKDIDKAHAISVLLDHLG
                     ASQADTIAFGDAKIDISMLDYCAIGVAMGNGGAEILAMADMITDDVEEDGLYNAFEKL
                     GLLDK"
     gene            31578..32411
                     /locus_tag="U1335_000189"
     CDS             31578..32411
                     /locus_tag="U1335_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002303877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HEM5230708.1"
                     /translation="MQIDKVYNNNVVQAIDDQGSELIVMGKGLGFQKKAGEELDTSKI
                     EKTFVLQNDYQQSDLSSLYLQMESSEVEVVNAIINRAEETLEVQFDLSLYLALADHLH
                     FVFQRCREGIFIENPLSWEIRKFYPKEYQIGLRSLDLVKEKLGLELEVAEASSIALHL
                     INAQKNGAFGKETQTISKIVTQILDIVRLHFGSVTYEEDTSYHRFVTHVQYFAQRVAN
                     GVVEGVNDAFLYEQVKANYPDAFACTEKIRQHISQVYDFQMSKDEQVYLTIHIQRLKV
                     S"
     gene            32623..34533
                     /locus_tag="U1335_000190"
     CDS             32623..34533
                     /locus_tag="U1335_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003106782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM5230709.1"
                     /translation="MAKDYTDLATDIVAHVGGKENISSLKHCVTRLRFGLKDESKADT
                     DYLKARDGVVTVVQAGGQYQVVIGNHVPDVYAVVQKVAGIAGDGSLDIDEGDGPKGNL
                     FERFIDLLSGIFQAFLGPLAAAGIIKGIVAIMASRGLTSDNSAIYAILNAAGDGFFQY
                     LPLLVALTSARKFKMNEFTALAIGMALIYPTLPGSLAALKEAGLDNVFGIPFVLPTAG
                     SYLSTVIPAILATWVASIIEKNIRKITPDVVKLFVVPFVTILLAVPLTFLVVGPVANF
                     ISDVLSNAFTAIMNFSPLLYGLILGATWQVLVMFGMHWAVVPLAIMQVASNGMSSILV
                     PALLPNFTQTGVLLAIMLKTKESKVKTVSMPALVSSIFGVTEPAIYGVTLPMKTPFFI
                     SCAVSGVIGAATMFFNVTGYSVGGMGVFLYPSLVNPANGDMSGMIAAIILTVVAIVAS
                     FAIQMALPVPYLYGEPTEKKSVEETKESVPELKEIKQEIIASPLIGKVVKLEDVPDAV
                     FASGAMGKGIAIDPLDGILVSPAKAEITLVFPTKHAIGLRTENGAELLIHIGMDTVSL
                     AGKGFESFVQVGDQVEAGQKLLEFDLHQIKAADLPVITPIIVTNTADYEDILVTQESQ
                     INSGDYLLTTVK"
     gene            34725..>35692
                     /locus_tag="U1335_000191"
     CDS             34725..>35692
                     /locus_tag="U1335_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000564846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISAs1 family transposase"
                     /protein_id="HEM5230710.1"
                     /translation="MIDFLLSIEEHKEEYDSRQAWKIRYPLSTILFLVFACQLAGIET
                     WKEMEDFIEMNESVLGEYVDLSVGCPSHDTLERVVSMVNPDFLKELKLSFEVSSEATD
                     FSKLIAVDGKTIRGNRGKHQSPTHIVTAYDGDNRFSLGQVAVEDKSNEITAIPRLLRQ
                     LDLRKSVVTIDAMGTQTDIVDVIISGKGDYCLAVKGNQGNLHEDIDLYFSDAKLLSKL
                     TEKGCHYQTIEKARSQIEVRDYWISHDVKWLSQRHPKWKKLRGIGMAKNTIDKDGIIT
                     EEVRYFILSFKGDVQTFSQVVRGHWSVESLHWLLDVVYREDKNQTL"
BASE COUNT        10660 a         6573 c         8330 g        10129 t
ORIGIN      
        1 gtcaaacaaa aagaaaacag aggtgtttta tgaaaaagac aacgaaactt tttgcacttg
       61 caggtgtgac tctcctttca gcatctgttc ttgcagcatg tggttcaaaa caatcaggtg
      121 cagcaaaaca ggaattgtca ttcccatctg aagtaaaaca agatggaaca gcagtcgcag
      181 atgctcaatt gaaatatgca tttgtttcag ctacaacttc atcaggtctc ttgattgacg
      241 agttgactga aaacacaact gactcaacat ttggtggaat ggttgatatt tcaatgtttg
      301 gttacgatgg agatcgtaag ttagatgatt ctggtcttgc taaagctgaa tttgatgtaa
      361 aaggtaagaa aatcactgtt agtttgacag gtaaagatta caagtggtca gatggtgagc
      421 catttacaat caatgactac atctttacta tcaagtcaat ggcaagcaaa gactatacag
      481 gtgttcgttt tgacgataaa ttcttgaaca ttgtgggtat ggatgaattt gttgctggaa
      541 cagcttcaga tatctcaggt cttaagaaaa ttgatgacta cacagtagaa ttgactgtaa
      601 aagaaatgtc accttctatg atgtatgccg gtggtgatgt acctgcctat atccaaccag
      661 aacatatcta taaagacatc cctgttgcag attgggaaaa gagcgagtac tcacgtacag
      721 ctaaacttgt tggtatggga ccttggaaaa tcaaggaaat cgtaaacggt gagtctatca
      781 cttatgtacc aaacgaatac ttcttcaaag gtacaacgcc aaaaacaagc tcattgaaga
      841 ttgacatcgt atctccagat actattgttt ctgaaatgaa agctggtaac tatgacatcg
      901 cagatatgcc tgttgaccag ttggattcat acaaggatgc ttctaacttg aatatcgttg
      961 gttctttgga ctcagcttat gaatacattt catttaattt tggtaaatat gacgagtctg
     1021 ctaagaaaaa cgtcatggat gaaagtgcta agatgaatga tgtgaaactt cgtcaagcaa
     1081 ttgcctatgc gattgatact aagacagctg gtgagtcatt gtacaatggt ctttaccacc
     1141 ctgcaaactc attgattatc tcattcttcg gcgatattca tgattcagag ttggaaggct
     1201 attcatacga tcctgaaaaa gcgaaaaaac tcttggaaga agctggctac aaagacgtag
     1261 atggcgatgg tatccgtgaa ggcaaagacg gtaaggaatt caagattacc tttgctgctc
     1321 gtaaacgtac ggaagctaac gaagcgctcg tacaacaata cattgcttgg tggaaagaag
     1381 ttggcttgaa tgtcgaactt tacacaggac gtacagttga aggtaagtcg ttctataact
     1441 cagttcaggc taatgatgct gctattgata tgtatgctgg tggatggtca acaggttacg
     1501 atccaaaccc aacaggactt tggggtccaa tcgcagcctt caacatgtca cgtttcgtgt
     1561 ctgatgaaaa tactaagttg ttgaatgcaa tcagctcaac agaatcattt gacgataaga
     1621 aaaatgttga gaactataag gcttggcaaa aatatgctca cgagcaagca tttgctattc
     1681 caacatttga atctgagtca atcacagccc ttaacaaacg tgtgaaaaac tatgattcta
     1741 actatggttc agcttcagaa aaaggtatcg cttttgaaaa tatcgaactt acagctgata
     1801 aaggtgtagc ggcagaatag ttttataaag aagataatag aatctgaaaa agccaacttg
     1861 cttggctttt ttcagattgc tattggaatt ttctgataat tatggtatag tagactcagt
     1921 acacaaaaaa tgagtcacta ctaacaaaaa ctcaagatgg atcacattaa cctactcaat
     1981 ttctaattga gtcagtaata gggatggtct tgatttatga ttggatatag tacttttttt
     2041 acttctgggt aaccgctatc aaacgataat tgatagaaat atgttattct agagtagtta
     2101 tataaagtca gttaatcaaa cattatatga acttgataat cataaggata ttgaattgat
     2161 tgagcttgat tagctggcac ataaaggagg aaaaagcgtg gctaccgaaa aaccgctttt
     2221 agacattaaa gatttacacg tcggtttccg tattggagat gattattttg acgctgttga
     2281 cggtgttgac atctcattgc aaaaaaatga aattttggca attgtagggg aatctggttg
     2341 tggtaaatca actttggcaa cgaccattat gggcttgcat aaccctttga ataccaaaat
     2401 cacaggaagc atccagtaca atgatatgga attgattggt atggatgaag ctaagtacaa
     2461 tacggtacgt ggtaatgata ttggtatgat tttccaagat cccttggctt ctctgaatcc
     2521 attgatgacg attggtgcac agattgatga ggcgctgttc tatcacactg atttggatgc
     2581 caatgctcgt acagagcgag ttttggaact cttggctcag gtaggtattc caaatcctaa
     2641 gcggacattt aaacagtatc cacatgagct ttcaggtggt atgcgtcagc gtatcattat
     2701 tgcgatggcc ttgtcttgta aacccccaat tattattgcg gacgaaccga caacagcctt
     2761 ggatgttaca attcaagcac aaatcttgga tctcttaaat gatattcaag cggagacagg
     2821 ttcgggtatt attttgatta cccatgactt gggagtagtt gcagagactg ctgatcgtgt
     2881 ggctgtcatg tacggtggtc agtttgtcga agtagcgcca gtaaaagaac tctttaccaa
     2941 tccaaaacat ccatatacac gttcgctctt gaagtcaaat cctcaatcag gtagcgaagg
     3001 aggcaatctt catgttattg aaggtattgt gccaccgatt acaaaaatgg ttcgtaaagg
     3061 ttgccgtttt gctccgcgta ttccgtggat tggagcagag gctcatgaag agaatccgag
     3121 catgcacgag gtaggtccaa atcactttgt tcgttgtacc tgccatgaga cattctattt
     3181 tgaaggggag gcctaatagt gggatttatt gaagtaaaag atttaaaagt ccattatcca
     3241 attcgtagtg gcttctttaa ccgtgtgacg gatcatgtct atgctgtcga tggcgttaat
     3301 attgagtttg aagaaggaaa aacctatggt ttggtaggtg agtcaggttc tggaaaatcg
     3361 accattggta aggcaattat cggtttagag cgtgccactt ctggtcagat tatctatgaa
     3421 ggacaaaatg taaccaacaa atcacgtggt aaaaaaggaa actttaatcg tgatgttcaa
     3481 atgattttcc aagattctct ttcaagtttt aacccgaaaa aacgtatttt ggacatcatt
     3541 gcagaaccaa tccgtaactt tgaccgttta tctccagatg aagaaaagaa aaaagttctt
     3601 caactcttgg atacaatcgg tctaaatgaa gaagctctga ttaaatatcc tcacgaattc
     3661 tcaggtggtc aacgccaacg tatcggtgtt gctcgtgcct tggctagtaa tcctcgtttg
     3721 attattgctg acgagccggt ttctgccttg gatttgtctg ttcaggcaca ggtcttgaac
     3781 tatatgaaac gtatccaaga tgagttcaag cttagctatc tctttatttc ccatgacctc
     3841 ggtgttgtac aacacatgtg tgatgaattg ttcatcatgt atcgcggacg tttcgtagag
     3901 acaggaaata agaacgatat ttataataat ccacaacata tttacactaa acgtttgttg
     3961 tctgcgattc caacgattga cccagtcaac cgtttgaaga ataaagaaaa acgtttggct
     4021 gctgaaaaag agtatcaaga aatgcaaggt caatactatg atgaaaacgg tcgtgtgtac
     4081 gatttgagat ccttctcaga aactcatcaa gtagcccttc cagaaggagg tcagaactaa
     4141 gatgtggaaa acagtattac gtcgtttact catgatgatt ccgcagatta ttattttgag
     4201 tgtcattgcg ttctttgttg cgaagatgat gccgggggat ccctttacag gattgattga
     4261 ccccaatatt gatccagcaa tcattgaaca aaaacggatt gcggcaggtt attatgaccc
     4321 aatccctgtt cagtatttcc gttgggtagg caatcttttg caaggagatt ttggtcagag
     4381 tgttattttt aaacaaccag ttgttgatgt tatcatgcaa cgtttaaaca acactatttg
     4441 gttgtcttta ttgacgatgg tgttgactta tttgattgcc cttccattgg ggatgattgc
     4501 aggtcgttac caaaactcgc ttgcagataa aatcattggc gtgtataact ttttgacatt
     4561 ttcaactcca actttcgttt ttgccatcct tatgctttgg atgtttggct ttagtttggg
     4621 ttggttccca acacgtgggt cgattgacgg tggtgtagaa ggatttgcag ccattctcag
     4681 tcgcttacac catatgattc tgccagcgat tacaatggca attttgtcaa caacagtaac
     4741 tattcaatat cttcgtacgg ggattatcga tgcgaagagt caggactatg ttcgtacagc
     4801 tcgtgccaaa ggtgttcccg agagagttgt ttataaccgt catatcttcc gtaattctat
     4861 cttgccaatt gcatctttct tgggctatga attgacagga ttgattggtg gttctatctt
     4921 cattgaaaat attttcactt atccaggtat cggccagtta ttctataact ctatttctag
     4981 tcgtgactat agtgtcatct tggctttgtt gttgatattt ggtatgggta ccttgttggg
     5041 gacattgatt tcagatatta tcatgagtat cgtggatcca cgtatccgtg tgaaatagaa
     5101 ggaggagtaa ggtgagtaaa gaaaataaaa aacaagtaca atctgcttca actcctccag
     5161 gtggcttccg tgtcatcgcg cgggagttta tgaaggatcg acttgcattg acctcattaa
     5221 ttatcttagt gacggttctc ttggcagtct ttatcggagc gcttctgttg gatcaagaac
     5281 aagttatgaa agtcaacctt ttgggacgtt acttggaacc aggtgttaac ggctatatct
     5341 tggggacaga tgaaggtggt aaagatatct ttggtcagct gattatcggt gctcgtaact
     5401 cgatcattat cggttttacc attacgatta ttactagtat cgttggtatc tctatcggtt
     5461 tgatttctgg ttattacggt ggtcgtttgg acggattctt gatgcgtatt gtcgatttca
     5521 tcatgatttt gccggtgact atgttgatca ttgtgttcgt gacagttatc aagaactata
     5581 cgatctatca cttcattctc atcatgagtg ccttttattg gacggccaag gctcgtctat
     5641 tccgtacaag gactttgtca gaggcaagct tggattatgt caatgcatca aaaacattgg
     5701 gaacaagcga cttcatgatt atgttccgtg aaatcttacc aaacttaagt tcattgatta
     5761 tcgttaactt gaccttgaac tttgcgggaa atatcggtat tgagacttcg ttgacttatc
     5821 ttggtttcgg tctaccatcg acagtaccaa gtttgggtac cttgattgcc aatgcccgca
     5881 atgcagatat tttggaaaac aagacatgga tttggttgcc agcagccatc ttcatccttg
     5941 tgatgatgct ctgtatcaac tatgtcggac aagctttcca acgtgcagca gatgctaagc
     6001 agcgtttagg ttaattgtga aaagggttcc tttgggaact ctttttttgt aaaatccgat
     6061 gtaacaagct tgttttttac agaaagcaga aaatgtggta aaatggagtg ataaaactat
     6121 ttgaggtaac gaattatgac tgttaaaatc aatactaaag acggccaaat tgaattgact
     6181 gatgacgtga ttgccacagt tgttggcggt gctacgactg agattttcgg tgttgttggg
     6241 atggctagta agtctgcgat caaggataat tttcaagcac ttttgagaaa agaaaattat
     6301 tctaaaggtg ttgtgattaa gaccttggaa gatggtcgca ttgcagtcga tgtttatact
     6361 gtgatgagct acggtgtaaa aatcagtgaa gtatctcgca acatccaaga acgcgttaag
     6421 ttcaacttgg aaaatcaact aggtatctct gtagatgccg tcaatgtctt tatccaaaat
     6481 atcaaagtcg taggagaata attgtgtcta aaattacaac tagtttattt caagaaatgg
     6541 tgcaggcagc atcaactcgt ctgaataaac aagccgaata tgtgaactca ctcaatgttt
     6601 tcccagttcc agatggggat actggtacca acatggggat gactattacc aatggtgcta
     6661 aagaagtagc agataagtct gcttctactg ttggagaagt tgcgcaaatt ctttctaagg
     6721 gcttgttgat gggagctcgt ggaaactcag gtgttattac gtcgcaattg ttccgtggtt
     6781 ttggtcaatc tgttaaaggc aaggttgaat tggacggtaa ggatttggcg caagcctttc
     6841 aacatggtgt agaagtggct tataaagccg ttatgaagcc agttgaaggt acaattctta
     6901 ctgtttcgcg tggggcagcc actgccgctt tgaaaaaggc agaagagaca gatgatgcgg
     6961 ttgaggtcat gcgtgctact cttgatggtg ctaatcgtgc tcttaagaaa acgccagaga
     7021 tgcttccagt cttgaaggaa gtaggtgttg tcgattcagg tggacaaggt cttgtttaca
     7081 tttatgaagg cttcttgtca gctttgacgg gtgagtatat tgcttcggaa gattttgagg
     7141 cgacacctgc tgttatgtct gaaatgatca atgctgagca ccacaagtca gttgcaggtc
     7201 atgtagcgac ggaagatatt acctttggtt actgtacaga aatcatggta gctcttcgcc
     7261 agggtcctac ttatgtcaag gactttgatt atgaagaatt ccgtgactac cttaacgacc
     7321 ttggagattc cctccttgtg gtcaacgatg atgaaatcgt taaagtccat gtccatacag
     7381 aagatccagg tttggtcatg caggcaggtc ttcaatacgg tagcttggtc aaggtaaaag
     7441 tggacaatat gcgtgagcaa catgaagctc aggttgagaa agaagaaagt ttccaaaaac
     7501 cggctgaaca aaaagagtat gctattattg cggtagctgc tggggaaggt ttgacagaaa
     7561 tcttcaaatc acaaggtgtt gactatgtga tttcaggtgg tcagaccatg aacccatcaa
     7621 cagaagattt tgtcaatgct attgaattgg tcaatgcccg caatgtcatc ttgttgccaa
     7681 acaacaaaaa tatcttgatg gctgctcaga cggctgctga ggttgcagaa gttgcggtta
     7741 aggttgtgga aactaagacc ctaccacaag gttttacaag cttgcttgct tttgatccaa
     7801 gtcgtgattt ggaaagcaac tttgaagcga tgacggcatc tctcgcagag gtgaaaagtg
     7861 gtagcgtgac aactgcggtc cgcgatacaa ccattgacgg tcttgaaatc catgagaatg
     7921 acaaccttgg tatggttgat ggcaagattg tggtttctaa tccagatatg atggaaacac
     7981 ttgtcgctac atttgagaaa atgctggatg aagatagtga aatcgtaacg atctatatcg
     8041 gtgaagatgg tgatgaggaa ctcgctcaaa ctcttgctga acagctagaa gaacaatttg
     8101 aagatgttga ggtcgaaatc catcaaggaa atcaaccagt ctatccatat ctttttagcg
     8161 tagaataaac aaaatcgcag gctctggctt gcgatttttt ctgtcgactt gtctacaatt
     8221 tccagtagac ctatgacaaa ctactggggc tatggtataa ttaaagacat gtatagtcag
     8281 aatgaaaatg aattgattgc cattggtgag agaattggaa aagcctgtaa gccaaatcaa
     8341 gttctagtat tatcagggga tttgggtgct gggaaaacaa ctctgaccaa gggtttggcc
     8401 aaggggttaa aaattgaaca gatgattaag agtcctactt atacgatcgt tcgagagtat
     8461 gagggaacca tgccactcta tcacttagat gtttatcgaa ttggagatga ccctgactcg
     8521 attgatttgg atgattttct ctatggagga ggtctaacgg ttatcgagtg gggagaatta
     8581 ctggatgtca gtctatttga tgactatttg ctcattcgta tagagaaaga gggagatggt
     8641 cgacgattga cagtcgaatc tcatggagct caaagtagcg atttagcgaa ggagttccaa
     8701 aatgtctgaa aaagaagtgt attttagtga agctgaacca gctgatgcag cagcttttat
     8761 tgattttatg aatcaagttg ctagagaaac ggattatctg gtcatggatg agactggttt
     8821 tcgatttagt gttgatgaaa tggagaccat cttcgaagca ggaatcgaaa atcctcgtga
     8881 attgtgcctg ttggctaagg ttggttcgga agtcgtcggc gcaatttctg ttaagtcctc
     8941 taagcagttt cgcattagcc atatcggaaa tatttttatt gcagtaaaaa aagcctactg
     9001 gggtcacggt ttagggacga ttttactgga ggaagtattg cattgggtag aggaaatgga
     9061 tgtattgaag cgtttggaat taacggttca ggttcgcaat gaggcggcag tacatttata
     9121 ccaaaaacta ggattcaaca ttgaaggaac ccagatacgt ggggctagaa cagatgaagg
     9181 agaatggctt gatctttatt atatgggcaa gttaattggt gaagtatgac aattggaaaa
     9241 aaaatattct taatgtcttt ggctattgtt ggtttaacac taggtgccgg cttaatatat
     9301 ggggccagct tgttaaattt ttctacaggt actatttcaa aaacctataa gcagctagat
     9361 ggagaaaaag aaatcactcc tattgatgcg atagagcccc taaccatcct actgatgggg
     9421 gtggatatgg accaagcgac ccgcggggga gattgggagg gtggccgtag tgattcgatg
     9481 attttggtaa ctgttaatcc caagactaag gaaaccaata tgatgagctt gactcgtgat
     9541 attatggttg agattgcaga agcgaatggg gagtcttcag gaacggttga aaaactaaat
     9601 cattcttata gctacggaca ggcaccgatg gccattgcca cgatcgaaaa gatgatggat
     9661 attaccattg accgctatat cgaaataaat atggatggtc tggttgagct tgttgatgcg
     9721 gttggaggta ttgaggtaaa caatactctt ggcttcccta tatccatttc agaacatgag
     9781 cctgcctata cctctattgt ccagccgggg caacagttgg taaatgggga acaggcgctg
     9841 gtttatgctc ggatgcgcta tgatgatcct gagggggata ttggtcgtca gagacgtcaa
     9901 cgtgaagtta taacggctat tataaaaaaa ctccttcagt tagacggttt tacccagtat
     9961 aagaagattc tgactgccat ttctaataat atgcgaacca acattgagat tagtcctgcg
    10021 acaattccaa atctcttggg gtacaaggac tctgtctcca agttgaattc ctatcagttg
    10081 cgcggtgtgg atcaaatggt tgatgcaatc tattatcaat taccaaccag cgaacaccta
    10141 ttggaaatgc aaaatatttt gaaaaaatct atcggcttag aagaaaatac cggcttagtc
    10201 acaaacgtga aggtctacga aggacagatg ggattgccaa gtccaataaa cgtttatgat
    10261 gtatatacaa atctcttgtt gttagaagca agtccatggg cagaaagctt ggatccagaa
    10321 atagggagtc catcggctac tacgactgtg acaacagaag agcaggtaac cgatttttca
    10381 acagagccag tacttggtga tgaaaacggg tcacaataat gtagtcattc agtttttctt
    10441 ttattatagt catttgaatt aactttgata catcgtcact ttcggcttgc cgtactctac
    10501 gaaagtaact agcttcgcaa gtcttatctc caacctagaa cagcctctag gctgttctag
    10561 cagcctgcac ctcagttcct tgtctgaaag ctaattcatt cgactatact ttgacgagcg
    10621 agtactaaaa gcctataaaa atagaggttg caaacaacct ctatttttat aggcttttag
    10681 tatgaggcaa tgagccgcag gcataactca atgctttctt atttctaggt gaccagctga
    10741 tgtacttcgc ttttttgttt tcaggctcag gtacgaatag tccactggac tgttaaaccc
    10801 aatcaaccac tgcgctgaga cgttgatact aactttgaga agcagtgctg ggctttttgc
    10861 ctagtcttgt gctattctca ttctggtatt ttttgagaat ctgttggatt tcttccaagt
    10921 ttcctgcaat actttgctga tagactcgag tcttatattg taagtcagaa gccatttcct
    10981 gcaagggttc ttgaaaactt tggataatgg caagttgttc ctgaatattg tccttgctca
    11041 gttgaatatc tgatagaagt tgtttggttt cctgtacttc tttagcgatt ttatcccgat
    11101 gcgtgactgc aaggaagctg gcggtagcgg cgcttacggc taaaatgata ttacgaagtt
    11161 tcatattatt ctcctagata gagctcttgt gccagttgag ccagggctgg gaagtcaggg
    11221 tcgttggctt taaattgaat gctcaatcca tcttgattgt taaagcgtgg taagagatgg
    11281 aagtgtgtat gaaagacggt ttgcccagcg gactcctcgt tattattaac gatgtttaga
    11341 ccactagctc caagtttttc ttttaactgg cgagcgatgg ttggcacaac agaaaagagt
    11401 gtggctgcag cgtctttatc catatcaagc acgtttcggt agtgttcttt aggaacaacc
    11461 aatgtgtgtc cttttgtgac ctgagtgatg tctaaaaagg ctaatacttg gtcatcttcg
    11521 tagacttttg aagctggtat ttctccagag ataattttgc aaaaaataca atccgacata
    11581 atggcaacct ctttctagga tttttgttat aataattata tcaaattgga ggaagaaatg
    11641 tatgttagaa gtaaaaaatg taactggagg atatgtcaat atcccagttt tgaaagatgt
    11701 atcttttacc gttgaggatg gtaaattagt tggtctaatt ggtttaaatg gtgcagggaa
    11761 atcaacgact attaaggaaa ttatcggtct tttgaccccc tatcaaggac agattgcaat
    11821 tgacggccta actttgctac aaggggctga aaattatcgg aagaagattg ggtttatccc
    11881 tgaaacacca agtttgtatg aagaactaac cctcaaagag cacttggaag tggtagcaat
    11941 ggcctatgat ttatcctggg agcaagcttg gggacgtgtt gagcacttgt taaaactgtt
    12001 tcgcttggat gagaaattgg actggtttcc tgtcaatttt tcaaagggaa tgaagcagaa
    12061 ggtcatgatt atttgtgctt ttatggtgga gccgagtctg ttgattgttg atgagccttt
    12121 cctgggatta gaccctgtgg ctatctctga tttaatcgct cttttggagg aagaaaaatc
    12181 taagggtact tccattctca tgtccactca cgttcttgac tcagctgaga aaatgtgcga
    12241 ctcttttgtg attttacatc agggacaggt tcgtgcaact ggaaatttgg aggagctaca
    12301 aagcgcattt ggtatggatg gtgcaagtct gaatgaaatt tatctggcct tgacgcaaga
    12361 aggagtggtt ggatgaaaga attgtttcaa caacgccgac tagatttttt aaatcgttgt
    12421 tccaagtatc tgcgctatgt tctgaatgac cattttgttt tggttctcat ggttttatta
    12481 ggctttttga gtttgcaata ccgtcaatta ttgttgtcat tccctgagaa tccgttgccg
    12541 attgtttttg tggttattgc aatcagtcta ctggtactag tgtccggaag aattgcgact
    12601 tatctagaag aagctgatca aatcttccta ttgaccaagg aaaaagacat tctgcaagga
    12661 ctcgaggttg cagccagacg cacggtcttg ttttggtcct ctatacaggt ggtggttcag
    12721 cttgttttgt taccaatcta tttgaaactg ggtttaccgg tgtggatgat tgtagctggt
    12781 cttcttactt tgttggtttt aaaatgtctt tttgtcaagc gccaattagt tgcttatcag
    12841 tcacagggag tattggactg gtctaaggct attccagatg aacaaaaaag gaaacagtct
    12901 attttacgtt tctttgcctt atttacgacg gttaaaggaa tcagtacgac tgttaaaccg
    12961 agaggctatc tcaatggaat cttgcgtctc gtcaagtcga gacagacttg gttttatctc
    13021 tacttacggg ctttcttgcg ttcaggagac tacttgggct tgacgatacg tctactgttg
    13081 ttggcgattt tgtccctatt tgccattgaa gaatcgtggt tatccatcgg cttagtttta
    13141 gtctttcatt atttgcttgt cttccagttg ttggggcttt acaagcatta tgattatcaa
    13201 tatataacac aactgtatcc tctggagaaa gattccaaga aaatcggtct tcagaatttg
    13261 cttagagtga ttttatatag tctattactg gtggaattgg gctttgctct gctattttct
    13321 aaagagaatg cgatggtagt cgtcttactt ctcgtgggga ttttcttgca tgaaatatat
    13381 ttgcctctaa aattaaaaaa attgattgac taaatagacg aaaattagta aaatagtaag
    13441 gaatttttaa aggaggaaag gcatgcagtt tgataccagt gggctacaat tacagtctat
    13501 tgcaggaaat agtggcaaag cgtttaaagg cctacggtca gacggaacgc cagtctttgt
    13561 gaagtatgag atgcctccga tagtgtctgc tcttgcgcgt gagcaaatta caccacccgt
    13621 tttgtcagca aatcgtgaag taggaatggg gcatcgtgta gagcaggagt ggttgaatgg
    13681 tcgtaccttg gagcgtcaag atatgactag taaacagatt cgtcaaatac tggtgagaat
    13741 gcactattct cgcattttgc tcaatcaggc tttgcagatg aattatacct atatggaacc
    13801 tcaggatttg gtttatcgtt ggcaaaaaga ggcgccaact agattgggac agaattctta
    13861 tctgcaatct atctgtcaag atttattgaa taatctacca agattccgtc aagaggtggc
    13921 aacatttgtt cacggagatt tgcatcatag taactgggta gaaacgacgt ctggtttggt
    13981 gtatttgaca gattgggaga ccgcttgtgt aacggatcgg atgttggatg ttgcctacat
    14041 tttgacgcat tatattcctc gtcagtcctg ggaagagtgg cttcgggctt atggctacaa
    14101 atataacagc acagtattaa ataaggttta ttggtatggc cagcttggct atctaaacca
    14161 aatagctaag catgtagaaa gctacaatgt tttggctgca aataaagaaa tttatgctct
    14221 acggcaattc cgtcagagtt tctataagga agtatgagag ttagaaatcg taagggagcg
    14281 agtgagcttc tagcaaacaa tccccagtat gttatctcca atccagagga gtgtaagggg
    14341 aaatgggcag agatttttgg aaacaataat cctatccaca tagaagttgg ttctggtaaa
    14401 ggtcgttttg tcacaggtat ggctgcgcaa aatccagata ttaactatat tggtattgat
    14461 attcaaatga ccgtgttaag ctatgccttg gaccgtgtgc ttgaagctgg cttaccaaat
    14521 ataaaattat tgcgggtgga tggttcgagt ttgaccaact attttgcacc ggcagaaata
    14581 gatcagcttt atctgaattt ttcagatcca tggcctaaga aacgtcatga gaaacgccgt
    14641 ttaacctaca agtcattctt ggatacctac aaggaaatcc tacctgagaa gggagaaatc
    14701 cacttcaaaa cagataatcg tggtctgttt gagtatagcc tggctagttt ttctcaatat
    14761 ggcatggtct tgaagcaagt ttggctagat ttgcatgctg atggtttgga aggcaacgtt
    14821 atgacagagt atgaggagaa attctcaaac aagggtcaag tcatctatcg tgtggaagca
    14881 cagtttcaat aattccctta gtggaaaatg aggagaggtc taacagagac ctttttcctt
    14941 tacaaatagg gatagatatg atagaataat ggaagtgaat aatgagaaaa ggggttggcg
    15001 ttagtcaacc ctttccctgt acacggattt ctgtatatag aatgatagta caagggagtt
    15061 tactgtcaaa ggaaatagag agtcctggat agtgcgaact atttgagtaa tgtatttcta
    15121 gcgactataa aaataggagg tgtttatgtc atcaattatt gaattggtca cagcagcaat
    15181 tacccccgct attcaaactc cttacgagtt ggtagatgtg gaatatggta aaatgggcgg
    15241 tgactatgtc ctatcgattt ttgtcgataa ggagggtgga atttcccttc aagatacggc
    15301 agatttatcc gaaaagatca gtccgatttt ggacactatc aaaccagacc catttccaga
    15361 ccaatacatg ctggaggtaa caagtccagg tttggagcgt cctttaaaaa cggcagatgc
    15421 tgttgagaag gcggttggaa agtacatcca tgtcaagctc tatcaggcaa ttgataaaat
    15481 caaggttttt gaaggaacgt tgctctcctt tgatggaaca aacctgatta tggagtatat
    15541 ggataaaact cgtaagaagg aagtgactat tccttaccag acggtggcta aggcccgttt
    15601 ggctgttaag ttataatgct ctttcatgag tattttataa agatattaga ctttaagaaa
    15661 ggaccttttg agcgcaaaag gaaaacaaca tgagtaaaga aatgctagaa gccttccgta
    15721 ttttagagga agacatgggt attaacaaag cggatatcat tgatgcagtt acagagtcgc
    15781 ttcgttcagc ttataaacgc cgttatggtc aatcagaatc agcagtgatt gaatttgacg
    15841 agaaaaaagg cgatttccat gtatttactg ttcgtgaagt agtagatgaa gtatttgata
    15901 gccgactaga aattagtcta aaagatgcct tggctatttc atcagcttat gaaatgggtg
    15961 acaaaattaa attccaagaa gacccagcgg aatttggacg tgtagctgct caatcagcta
    16021 aacagaccat catggaaaag atgcgcaaac aaaagcgtgc cattaccttc aatacctaca
    16081 agcaacatga aaatgagatt atgtcaggta cggtagagcg ttttgataat cgcttcatct
    16141 atgtcaacct tggtaccatt gaagcacaat tgtcaaaaca agaccaaatt cctggtgagg
    16201 ttttccaatc tcatgatcgc atcgaagtct atgtctacaa ggtagaagac aatggtcgtg
    16261 gtgttaacgt atttgtcagc cgtagccatc cagaaatgat caaacgtctc atggaacagg
    16321 aaattccaga agtatacgat ggaacagttg aaatcatgag tgttgcccgt gaagctggag
    16381 accgtacgaa agtggctgtt cgtagccata atccaaacgt agatgctatt ggtactatcg
    16441 ttggtcgtgg tggttcaaat attaagaaaa tcaccagcaa gttccaccca gctcgttatg
    16501 atgctaagaa tgaccgtatg attcctactg aggaaaatat tgatgtcatc gagtgggtag
    16561 cagatgaagc ggaatttatc tacaatgctc tcgctcctgc tgaagttgac caagtattgt
    16621 ttgacacgga agatgggaaa catgctacag tcgttgtacc agatgataag ttgtcattgg
    16681 caattggtcg tcgcggtcaa aacgttcgtt tggcagcgca tttgacagga ttccgtatcg
    16741 acatcaagtc agcatcggag tatgaagctt ttgaagcaac tcaatatgca acagacgaag
    16801 ttgtagaaga agtcgcagaa gaacaagaat aaggcaaaag gagcaaccat ggcaaaagct
    16861 agaaaaatac ccttgcgcaa gtctgtggtg tccggtgaaa tcatcgacaa acgggatttg
    16921 ctccgtattg taaaaaataa agaaggtcaa gtatttatcg atccaacagg caaggcaaat
    16981 ggtcgtggag cttacatcaa gcttgacaat gatgaggcaa gccaagctaa gaaacgtcgt
    17041 gtcttcgatc gttcctttag tatggaagtg gccgaagaat tttacgatga attaattgcc
    17101 tatgttgatc ataagatcaa gaggagagaa cttggactcg aataagagac agaaaatctt
    17161 aaatttatta ggtttggccc agcgagctgg tcgcctggtt tcgggtgagg acctggttgt
    17221 tgaagctatt caaaaagggc aggcaaagtt ggtgttttta gccgaagatg ctgctggaaa
    17281 tttaagtaaa aaagtaacag ataaaagtca tacctatcaa gtagaagttg taacagtgtt
    17341 ttcaacactg gaattgagtg cagctgtcgg caaggctaga aaagttcttg cagtgacaga
    17401 cgctggattt acaaagaaga tgaggtctat tatggaatag aacaggagga caaggcattg
    17461 tctaagaaga gattgaatga aatagcccgt gaattaggcg taagcagtaa ggaagttgtt
    17521 gctaaggctc aagaattggg ttttgaagtc aaaagtcatg cttcaagcgt agatgaagca
    17581 agtgctaaac gccttgcaga aagctttggg ggacaaaaat cagcggcaac taaagttgcg
    17641 gcaaaagtta gccagcctga aaaggttgat gaaactccaa aagtggaaac agctaaggta
    17701 gaaaaagcta aggaaacaca gccagtagta aaagaagaag ttgcggcaag tgcggtacaa
    17761 tcagctccac atcgccctca gagccgtaac tttaaggcag aacgtgaagc acgggccaaa
    17821 gagcaggctg ctaagcgagc tcagggtcaa ggaaaaggtg gtcaagctaa atctggtcag
    17881 gaccgtcgtg acaaccgtca acaaggtcag ggacgttcaa acaatgagcg aaatgatcgc
    17941 cgcgacaatc gtcgtgacca gcgtccagaa gagcggaaag acaaccgatt tggagaccgt
    18001 cgcgataatc gtgccaaccg tcgtcaggac aaccgttcag gtcagtcagc tcgctttgaa
    18061 caaagagagg ctgcaaaacc agcaggacct aaaattgact tcaaagcgcg tgctgctgct
    18121 ttgaaagcag aacaaaatgc ggaatatgct cgtaccagtg aagaacgttt tcgtcaggct
    18181 caggaagcta aaaagcaacc taagaagcca aaagaaatta agtttgaaga accggttgtg
    18241 gaaagcaaac catttgtgaa gcctgcacct gttgcatcgg taccagagca agttgcagaa
    18301 actactgtag atacccgtcg taagaaacaa gctcgaccag ataaaaaacg tgactttaat
    18361 agtgacgaag aagatggtcc acggaaacaa caaagaaatc gaaatagtca aaatcaagtg
    18421 agaaatcaaa gaacaagtaa ctggaataac aataagaaaa ataaaaaagg caaggcaaac
    18481 caacctgcca aacctgtcac agaacgcaag ttccacgaat tgccaactga atttgaatat
    18541 actgctggca tgaccgtcgc agaaattgca aaacggatca aacgtgaacc tgctgaaatt
    18601 gtgaaaaaac tcttccttat gggagttatg gcgactcaaa accaatcttt ggatggagat
    18661 actatcgaac tcctcatggt tgattatggt attgaagcga aagaaaaggt agaggtcgat
    18721 aacgcagata ttgagcgttt cttcgtagaa gagggttacc tcaatgaaga agagatgaca
    18781 gaacgcccac ctgttgtgac tatcatggga cacgttgacc atggtaaaac aaccttgttg
    18841 gataccctac gtaattctcg tgttgctact ggggaagctg gtggtatcac acagcatatc
    18901 ggtgcctacc aaattgagga agctggtaag aaaattacct tcttggatac tccaggacac
    18961 gcggccttta cttctatgcg tgcacgtggt gcatctgtta ccgatttgac catcctagtc
    19021 gttgcagcag atgatggtgt catgccacaa acgattgagg ctatcaacca ctcaaaagca
    19081 gctaatgtgc caatcattgt agctatcaac aagattgaca agccaggtgc aaacccagag
    19141 cgtgtcatcg gtgaattggc tgagcacggt gttatctcaa ccgcttgggg tggagaatct
    19201 gaatttgtag aaatctcagc taagtttaac caaaacattg atgaattgtt ggaaactgtt
    19261 cttttggttg ctgaaatcca agaactgaag gcagacccaa ctgttcgtgc gattggtaca
    19321 gttatcgaag cgcatttgga taaagggaaa ggtgcggttg caaccctcct cgttcaacaa
    19381 gggacactta atgttcaaga tccaatcgtt gtcggaaata ccttcggacg tgttcgggcc
    19441 atgacaaacg accttggtcg tcgtgttaaa actgctggtc catctacacc ggtatctatt
    19501 actggtttga atgaaacgcc aatggctggt gatcattttg cggtctatga agatgaaaaa
    19561 tctgcgcgtg ctgccggtga agagcgtgct aaacgtgctc ttcttaaaca gcgtcaagca
    19621 acgcaacgag ttagtcttga aaacctcttt gataccctta aagcaggtga ggttaagtca
    19681 gttaatgtga ttatcaaggc cgacgtacaa ggttctgttg aagctcttgc atcatcgctt
    19741 caaaagattg aagtagaggg agtacgtgtc aatattgtcc actctgcagt tggtgctatc
    19801 aatgaatcag atattactct tgcggaagct tcaaatgctc ttgtgattgg tttcaacgtt
    19861 cgtccaacgg ctgaagcacg tagccaagct gaagcagatg atgttgaagt acgtcttcac
    19921 agcatcattt acaaggttat cgaagagatg gaagatgcca tgaaaggtat gcttgatcca
    19981 gaatatgaag aaaaaatcat tggtgaggca atcattcgtg aaaccttcaa ggtatccaaa
    20041 gttggaacga tcggtggatt tatggtcgta cgtggtaagg ttacccgtga ttcaagtgtt
    20101 cgagttatcc gtgatggtgt tgtagtattt gatggtaaac tagctagttt gaaacgctat
    20161 aaagatgacg tgaaagaagt tggtaatgcc caagagggtg gtttgatgat tgagaactac
    20221 aatgacttga aagttgatga taccattgaa gcttacatca tggaagaaat caaaaaataa
    20281 tatttgctca ttgtcaaaat catagacaag tgattttgtc gaggaagtga taatttaata
    20341 gattttagta ggttttaaag caatagtttt taatctactt ggattattca agctggggaa
    20401 actcagcttt tctatcatct aagaaaggag agaatatggc gaatcatttt cgtacagacc
    20461 gtgtcgggat ggaaatcaag cgcgaagtca atgagatttt gcaaaagaaa gtccgcgatc
    20521 ctcgtgtgca aggtgtgacc atcactgatg tgcagatggt tggtgatttg tcgatggcaa
    20581 aagtttacta tacaattatg agtaacctgg cttctgacaa ccaaaaagcc caaacaggtc
    20641 ttgaaaaagc aacgggaact attaagagag aacttggtcg caagctcact ctctataaaa
    20701 ttcctgactt ggtctttgaa aaagatcaat caattgagta tggcaacaag attgaccaaa
    20761 tgttgagagc tcttgaacaa aaagattaag aaagtcgaat ggaaacattc ggctttttct
    20821 gggtacgacg agcatgttgt acatctgagg tgaaagttct ccaagggcac ctgctaacgg
    20881 taaagccaat agcgactccc aagctagact atcgcgaggt agcggataaa aaacggtttg
    20941 aagagagact attttacata cgtacggtgt gtgaaaaaaa ggtgagcgtt tacaagcctt
    21001 tctaaagatg gtatactaat ataaaagaga ttgcgtagga ggaagttatg aaaacagtta
    21061 ttagtaaact gatgttagtg tccacggttg tactattagc tgcttgtcag tctaatcagg
    21121 taaaaggtgg tgagagttct agttctagtg cttcaagcca agtttcagat ggttctagtt
    21181 tgcagcaagc gtcaacaata gcatctagct ccgagacgca agcatcctca gtgaccactc
    21241 ctgagctaag tgaagtatac caatcagtta ttgatcgtta tcaagcgaat atggggcagc
    21301 ctgctgaggc tatcaatcag gatgaggtca gtagctatct gagcttatta actagccagg
    21361 ggcaagaata cagtggaata ttttatagtt tgtatgatgt caaccatgat ggtacagagg
    21421 agctgcttct agctttggac aagtcgggag aatatgtctt aattgacctc tatactcagc
    21481 ttgccgatga gagtctacgt ttggtggata atttccgcaa tcttggattt gaaattggac
    21541 cgaacgccct acttcgtcct ttacaggatg gaacatactt atttgaagga gctggtgttt
    21601 ttcgcattta tcaatacaat gcgatgattc caggtttaaa acggatttct gaatcagata
    21661 ccaatcctga aacttctccc ttgcttgagt tgaaaagctt gcattgggtt aagctataga
    21721 ttttatcaat gattattcct cggctgggtt tcccggcctt ttgtagttcc taagaaattt
    21781 aagttttctt ttggcaatct ttaatcttgc ttttaggaag gaaaggtaaa ctaggagcat
    21841 atcaggaagg gatacgactt cctaaagaaa gaaaaggaat ctacattatg aaaacaaatc
    21901 ttaaaaaatt actttactct ggtgttactc ttatgagcct tggtgtctta gcagcatgtt
    21961 catctacttc aagttcaacg actacttcaa gctcagcagc aactagtcag acaagtgtag
    22021 cgacaacttc aaataatagc acttcatcag attcaagctc gtcaactatt gactggtcag
    22081 cccttccaac gacagaagtg acgctttcaa atgatggttt gaaaattact gagggtggaa
    22141 cctatatttt gactggttca acaacagctg gtgtaacggt tgaaacagat gccaatgttc
    22201 gcatcattct agcaggtgct gagatttcaa gttcagatac tgcagcaatc aatgttatta
    22261 atgctgacaa tgttgaattg gaaatcaaag atggtacgac gaatacagtg aaagatacca
    22321 gcaatcatac agataccaat attgaagggg ctatccatgt tgaagctgat ttgaccatta
    22381 caggaaatgg tagcctgacc gttgaaggca acttccaaga cggcatcgta tcgacagatg
    22441 accttgtcgt gaattcagga aacattaccg tcactgcagt ggatgatggt atccgtggca
    22501 aggattcatt gacaatcaat ggtggtacaa tcaatgtcac agcaggtggt gatggtatca
    22561 agtctacaaa tgatacagat actaccaaag gttatacaac tatcacaggt ggtgaaatta
    22621 ctgtaaaagc aggtgatgat ggtattaaag cggagacggc tttgacaatt gacggaggta
    22681 ccattacagt atcagaatca gtagaagcct tggaaggaac taatatcact atcaacggtg
    22741 gtacattaga tgtttacggt tcagatgatg ctattaatgc ggcaagtaca acttcatctg
    22801 atatctatat caaggtaact ggtggtgact tgaaagttgc ggttggtagt ggggatacag
    22861 atgcctttga tgctaatgga gacatttata tctctggtgg tacaattgat gtaacagctc
    22921 aatctgcttt tgacttcgac ggaactgctg aattgacagg aggtactgtg acagttaacg
    22981 gtgaacaaat tactcaaatc gtcgcaacag gaccaggtgc tggtggccac ggtggctggt
    23041 aagaaataaa ataagacttg agcccagctc aagtcttatt tgttcggtcc atattaggta
    23101 ggttaagttt atatttaatc accaagaggc gaaggaggag gaaaaaggca aagcagacaa
    23161 tgaagcttgg gatgcgagca aaatggagtt ggacaaccaa gatgtgatag gccaagcccg
    23221 caaaaaaagc cagcagggca taaacatctt ccttgagaac agaaggagtt tcgttgacca
    23281 acaagtcgcg gatgattccc ccgcccacac cagtcagact agccaaaata ccagtcgcca
    23341 tactgttcaa atgggattcg ataccagcac tggcacccaa gagagcaaat atgaccaggc
    23401 cgatagcatc aaaggtcaga ttgaccttgc ttaaatagcg ataaagttgc ttgtcacggg
    23461 gattgtcctg ctttttacta atgacaatca catacatcat aagggctacg ccgattgaca
    23521 gataaataga cgaaggctcg gtcagagcag tcggaatctt acccagcatg gtgtcccgaa
    23581 tcattcctcc accaactgcc gtgataatag ccagcaggct gatgccaaaa atatccagct
    23641 ttttcttgaa gcccttaatc acacccgata cggcaaaggc aatggtgcca atgtaattac
    23701 aaatgagtag aaaaaaatca aaatccatgt caacctccat gctccatatt agcacaaaat
    23761 gagggggctt tcaagactag aaaagtttgt gaaaaaagtt tcaaataagt aaagtgaatc
    23821 ttttgaggat ttgtgaaaaa acgcactaaa tcaaggtttt cacgaaaatt tctgtaaaaa
    23881 gaaaacggtt caattacttg ccatttgtga aatattggtc tatcatagta cagaaagaga
    23941 aaaacctttg gaggaaatta tggtatctat ctcaaaagaa caacatttgg atatgttcct
    24001 aaaaatgcaa caaatccgtg atgttgatat gaaattaaac aaattagtgc gtcgcggttt
    24061 cgtacaaggt atgactcact tctcagtcgg tgaagaagct gcggctgttg gacctattgc
    24121 tggattgaca gatgaggaca tcatcttctc acaccaccgt ggtcacggtc acgttattgc
    24181 aaaaggtatt gatatcaacg gtatgatggc tgagcttgct ggtaaggcaa caggtacatc
    24241 taaaggccgt ggtggttcta tgcacttggc caacgttgaa aaagggaact ttggttcaaa
    24301 cggtatcgta ggtggtggtt atgcccttgc ggtgggtgcg gcccttacgc aacaatacct
    24361 cggtacagat aatatcgtta ttgccttctc aggtgactca gcgacaaacg aaggttcctt
    24421 ccacgaatca atgaacttgg cagctgtttg gaatttgcca gttatcttct tcatcaccaa
    24481 caaccgttac ggtatctcaa ctgacatttc ttattctact aagattcctc acctctacca
    24541 acgtgcagca gcatacggta ttccaggtca ttatgttgag gatggtaacg acgttattgc
    24601 cgtttatgaa aaaatgcaag aagtcatcga gtacgttcgt gcaggaaatg gtcctgccat
    24661 ggtcgaagtt gaatcatacc gctggtttgg acactcaact gccgacgcag gtgtttaccg
    24721 taccaaagaa gaagttaacg agtggaaagc aaaagaccca cttaagaaat accgcaaata
    24781 cttgacagag aacaagattg cgactgacga agaattggat gctattgaag cacaagtggc
    24841 agaacaagta gaagtatctg tgaaattcgc acaagaaagc ccagatccag acatctcagt
    24901 agcatatgag gatgtgtttg tagattaagt aacgagaacg ttaaaaggac acagtgaaaa
    24961 taagcggtaa gtccgaaatc tttgatttcg tagacgcacc ctcgtcaaga caactagtat
    25021 tttcacaggt gaaaccgaag aaagtacagt tgtctacgac gcagtaactg caatagttaa
    25081 acatgaaatt cgcacagtcc ttagttcgag tacaattcta agttgtgaag acgttaaaga
    25141 ggcacagaaa aattagggag tcagctagtg atgcggacat cactaatggc tcatctattt
    25201 ttccaagcct ctagtctgaa cccaactatt aacgtaagaa gtttgactaa gctctaaaga
    25261 agcaagtcaa actagggtgg ttcaccaagg tagactacct acttaagttc gagtacaatt
    25321 ctaaggtgtc ttaagctggg acaataaaca attacatcgt agtaattgtt tgattttcct
    25381 tagttcagta aagataaatt gatataaatt aggagtaaaa aatggctgaa acaaaagtaa
    25441 tggccttgcg tgaagcgatt aacttggctc aaagcgaaga aatgcgtaag gatgaaaaag
    25501 tattcttgat gggtgaagac gtcggtatct acggcggtga cttcggtaca tctgttggta
    25561 tgttggacga atttggtcca aaacgcgtcc gcgacacgcc tatctctgag gctgcaatcg
    25621 ctggttctgc agttggtgcg gctcaaacag gtcttcgtcc aatcgttgac ttgactttca
    25681 tggacttcat cacaattgcc cttgatgcaa ttgttaacca ggctgccaaa accaactaca
    25741 tgtttggtgg tggtttgaaa acacctgtaa ctttccgtgt ggcttcaggt tcaggtatcg
    25801 gttcagcagc acagcactca caatctcttg aagcttggtt gacccacatt ccaggtatca
    25861 aggtggttgc accaggtact gctaacgatg caaaaggtct tttgaaatca tctattcttg
    25921 acaacaaccc agttatcttc ttggaaccaa aagctcttta cggtaaaaaa gaagaagtga
    25981 acttggaccc agatttctac attccacttg gtaagggtga aatcaaacgt gaaggcacag
    26041 atgtaactat catttcatac ggtcgtatgt tggagcgtgc cttgaaggct gctgaagaag
    26101 tagctgcaga aggcatcagc gtagaagtgg ttgacccacg tacccttatc ccattggata
    26161 aagaattgat catcgaatct gtgaagaaaa ctggtaaggt tatcttggtc aacgatgctt
    26221 acaaaacagg tggtttcatc ggtgaaatcg catcgatcat cacagaaagc gaagcctttg
    26281 actacttgga tgcaccaatc atccgtatcg cttcagacga tgtaccagtt ccttacgcaa
    26341 acattcttga aaacgcagta ttgccaaacg tagagaaaat caaagcggca atctacaagc
    26401 aagtaaacag aggttaatct tatcgtcatc cgcttatctt ttctggctgt gttgatttgg
    26461 cttgcctaac gtcagttatg cctgcaccaa atcgccttgt cagaaaagca atcggaaaga
    26521 cgataaccct aatgggagtg ggaaagaact cgaccaagat aaaaagagtt cgtcttcccc
    26581 cccgcacagt tgattaggcc agatttggag tgcaaaacac gaacaaatct gccaatcaac
    26641 cactgcgctg agatgttgac acgaactctg agtagtggtt ctgggttttt tgcccagcct
    26701 cgactaagaa tgcttggaaa agaattgagc cgcttcgatt atcgaagtct ggttttgttc
    26761 ttgacaaggt aagaaactga aagaaaggat tagaacacga actaaatgct cggaatttag
    26821 atagtccgcc ttggatgtga agcatcctgc gttggactcc taaaattcgg tcgcatttgg
    26881 acgttctttg tatcataatt atggctattg aaatcattat gcctaagctc ggtgtggaca
    26941 tgcaagaagg tgaaatcatc gagtggaaaa aacaagaggg cgatttcgtc aatgaaggcg
    27001 atgtcatctt ggaaatgatg tctgacaaga ccagcatgga gctggaagca gaagagtcag
    27061 gcgtcctatt gaaaattgtt cacggaaacg gtgctaccgt tcctgtaaca gaagttattg
    27121 cctatatcgg tgcagaaggt gagacggttg aagtaggagc ttcatctgct ccagttaccc
    27181 cagctgcagc tattgaagaa gtacctgcgg gtcgtacacc agtaatcgtt gctcctgcaa
    27241 ctgctgccaa accacaaggt ggcggcaagg ttcgtgcgac tccagcagca cgtaaattgg
    27301 cgcgtgagct tggtattgac ttgggtcttg ttccaggaac aggtgctaac ggtcgtgtcc
    27361 acaaggttga cgtcgaagac ttcaagggag cagctccaaa agcaactccg cttgcagccc
    27421 gtattgcagc agaccaaggt gttgacctgt caactcttac aggttcaggt gtcaatggca
    27481 agattgttaa ggacgatgtt ttggcagtac ttgctcctgc agctgtagaa actgctgctc
    27541 cagcaccgaa aactgaagag aaaccagcta aagaattgcc agaaggcgtt gaaatcatca
    27601 agatgagccc aatgcgtaag gcgatttcaa aaggtatggt caactcttac ttgacagctc
    27661 cgacatttac gcttaactac gatattgaca tgaccaacct catggcactg cgtaagcagg
    27721 ttcttgagcc aatcatgaac aagacaggtt tgaaagtaac atttactgac ttgatcggtc
    27781 ttgcggttgt tcgtaccttg atgaaggaag aacaccgtta catgaacgca tctttgatta
    27841 acgatgcaca agaaatcgaa ttacacaagt tcgtcaacct tggtatcgca gtaggtctag
    27901 atgatggctt ggtggttcca gttgttcatg gtgcagataa gatgagcttg tctgactttg
    27961 tggtggcttc gaaagatgtc atcaagaagg ctcaatctgg taagttgaag ggggctgaaa
    28021 tgtcaggttc gaccttctct atcaccaact tgggtatgtt tggtactaaa acctttaacc
    28081 caatcatcaa ccaaccaaac tcagcaatcc ttggtgtagc atcaacagtt caaacaccag
    28141 ttgttatcga cggagaaatc aaaatccgtc caatcatggc gctctgcttg accatcgacc
    28201 accgtattgt tgacggtatg aatggtgcta agttcatggt tgacttgaag aacttgctgg
    28261 aaaacccatt ggaattgttg atctgagata agatgcaaaa ggcgttaaga aaaccgtatg
    28321 aaaataggaa atcaacgatg tgccttgagg cacgaggcga tttatctttt tcaataggtt
    28381 tttagcctgt gctcaatttg gtaaagagaa aaaataaaga aaggatgtag aacgagttcg
    28441 tgacatttga acacgaacta aatgcttcgg aatttagata gtccgcctcg gatgcaagca
    28501 tcctacgttg gactcctaaa attctgtcgc atttgacgtt ctttgtatca taattatggc
    28561 aatcgaaatt attatgccta aacttggtgt agatatgcag gaaggcgaaa tcatcgagtg
    28621 gaaaaaacaa gaaggtgatt ttgtcaacga aggtgatgtt atcttggaga tgatgtcaga
    28681 caagacaagc atggaattgg aagcagaaga gtcaggtgtt cttttgaaaa tcgttcacgg
    28741 taacggtgca acagttcctg taacggaagt cattgcttac cttggtgcag aaggcgaatc
    28801 agttgaagta ggtagcacgc ctgctccagc tgaggttgct caagcaactg ctgacttgaa
    28861 agcagctggt ttggaagtgc ctgcagctcc tgcagcaact ccacaagctc ctaaggctga
    28921 attggcggct gacgagtatg acatggttgt tgtcggtggt ggtcctgctg gttactacgc
    28981 tgccattcgc ggtgctcaac tgggcggtaa aatcgctatc gttgagaaat cagaatttgg
    29041 cggtacctgc ttgaacaagg gttgtatccc aactaagacc taccttaaaa acgctgaaat
    29101 ccttgacggc ttgaagattg cggctgagcg tggtatcaac cttgcttcaa caaactacac
    29161 cgttgatatg gacaagacag ttgacttcaa gaacaaggtt gtgaagacat tgactggtgg
    29221 cgttcaaggt ctcttgaaag ctaacaaggt aacaatcttc aacggtcttg gtcaagtaaa
    29281 tcctgacaag actgttgtca tcggcgacaa ggtcatcaaa ggtcgtagca tcatccttgc
    29341 aacaggttct aaagtatcac gcatcaacat cccaggtatt gattctaagt tggtattgac
    29401 ttctgatgat atccttgatt tgcgtgaaat tcctaagtca cttactgtta tgggtggtgg
    29461 cgtagtcgga gtagaacttg gtttggttta cgcatcatac ggcacagaag taacagttgt
    29521 tgaaatggct gaccgtatca ttccaggtat ggaccgcgaa gtatctgttg aattgcaaaa
    29581 agtcctttct aagaaaggta tgaaattctt gacatctgtt ggtgtatctg aaattgttga
    29641 agccaacaac cagttgacca tcaaattgaa cgacggctca gaaatcgttt ctgaaaaagc
    29701 ccttctttca atcggtcgtg taccacaatt ggctggtctt gaaaatctta accttgagct
    29761 tgaccgcggt cgtatcaagg tcaacgagta ccaagaaaca tctatcccag gtatttatgc
    29821 accaggtgat gtcaacggta ccaagatgct ggcacacgct gcttaccgta tgggtgaagt
    29881 ggcagctgaa aatgctattc acggtaacca ccacaaggcg aagttggact tcacaccagc
    29941 agcagtttac actcacccag aaatcgctat ggttggtttg acagaagatc aggctatcga
    30001 gaaatacggt aaagaaaaca tccttatcgg tcgcaacagc ttcactggta acggtcgtgc
    30061 tattgcttct aacgaagcac atggtttcgt aaaagtgatt gcggacaaga aataccacga
    30121 aatccttggt gttcatatca tcggtccagt tgcagctgaa atgatcaacg aagcagcaac
    30181 tatcatggaa tctgagttga cagttgatga cgtggcagca tccattcacg gtcacccaac
    30241 cttctcagag gttatgtatg aagccttcct tgatgtgctt ggtgttgcga ttcacaaccc
    30301 accaaaacgt aaataatata gcattcagtt tatcttttat tacttcgtta actcgatttg
    30361 ccgtacacta gtacagccta catctcgttg cctagtacta aatgcaaact gaaatgctaa
    30421 catctaaaag aaagtccatg tggctttctt tttgtatgtt cataggatag tatcaatttt
    30481 tcgcagtttt tgactgttat ttgatagaaa aacagactat acttgtagta gaaaaaggca
    30541 aggagaataa agatgcgcaa gattattttt ttagatgtgg acggaacctt ggttgactat
    30601 cataatcgga ttccagaatc tgccattcgt gccattcgac tggccagaga aaatggacac
    30661 ctggtctatg tttgtactgg taggagtcga gctgaaatgc agccagaact atgggagatt
    30721 ggtcttgacg gaatgattgg tggcaacggc tcttatgtcg agcatcaagg tcaggtcatc
    30781 atgcaccagc ttctatcaga agaggatagc agagcgattg tggattggct ccatgaacgc
    30841 ggcttggaat tttacctgga aagcaacaac ggcctttttg ccagtgaaaa tttccgtgaa
    30901 cgtgcccgtg aaaccctgcg gatttattcc atgaataagg ggaaaactgc agaagaggtg
    30961 gccactcagg aagtagaaga cgttatacac ggcatgattt ttgatggtca actctaccgc
    31021 aatgacctca acaaagtcag ttttgtgctc gattcttaca aggaccactt ggattccaag
    31081 caagcctttc cgcaactggt cgcaaacacc tggggaggtc gcggagagtc agctctcttt
    31141 ggtgacttgg gggtgaaaga tatcgacaag gcccatgcca tttctgtatt gctagaccat
    31201 ttgggtgcta gtcaggcaga caccatcgcc tttggagacg ctaaaattga tatttccatg
    31261 ctggactatt gtgctattgg agtggctatg ggcaatggcg gagcagaaat cttggctatg
    31321 gcagatatga taacggacga tgtagaagaa gacggcctct acaatgcctt tgaaaaattg
    31381 ggactacttg acaagtagct ctcagaataa atcattaaac ctcttgcaaa aacgcttaca
    31441 atctgataag ataagtgtag gattgttact gataagcagg caaaacctaa gcagatagta
    31501 aagggtctgg gaacagcctt atttgctata tgcttgggtt cttttttatc agtcgagtaa
    31561 tgaggtggtg aaaatacatg cagatagata aagtctacaa caataacgtt gttcaagcga
    31621 ttgatgatca aggaagtgaa ctgattgtca tggggaaggg actaggtttt cagaaaaaag
    31681 caggggaaga attagacacc agcaaaatcg agaaaacctt tgtgctgcaa aatgactacc
    31741 aacaatcaga tttatcgagt ctgtacctgc aaatggagag cagtgaagtc gaagtagtca
    31801 atgccattat caatagggca gaagaaactt tagaagttca gtttgatttg tctttgtatc
    31861 tagccttagc agaccattta cattttgtat ttcagcgatg ccgtgaaggt atctttattg
    31921 agaacccact gtcttgggaa atccgtaaat tttaccccaa ggaataccag attggtttgc
    31981 ggtctcttga tttagtcaaa gaaaaattgg gtttggaatt ggaggtggcg gaagcttctt
    32041 ccattgccct ccacctgatc aatgctcaga agaatggtgc ttttggtaag gaaacccaaa
    32101 ccattagtaa aatcgtgact cagattttag acattgtccg ccttcatttt ggtagtgtga
    32161 cctacgagga ggataccagc taccaccgct ttgtaacgca tgtccagtat tttgcacaac
    32221 gggtggcaaa tggtgtggta gaaggagtca atgatgcctt tctctatgag caggtcaagg
    32281 ctaattatcc agatgccttt gcttgtacgg agaagattcg tcagcatatc agtcaggttt
    32341 atgactttca aatgtccaaa gacgagcagg tctacctgac cattcatatc caacgattga
    32401 aggtcagcta gccaaaatta gcgaaaaaaa tcaaaaaaac ttcagaaaac gcttgcaaaa
    32461 caatttgcaa tgtgttatta taaattcatc aaaaggattg ttactggtca gcaggcaaaa
    32521 cctaaatagt tacaagatag tatttttcag tgtaggctga tagatgctgt ttggtaatta
    32581 tttaggtttt tctgtttttc cagaaaagaa aggagccgaa aaatggctaa ggattataca
    32641 gatttagcta cagatattgt agcccatgtc ggaggtaaag aaaacatcag cagtctcaag
    32701 cactgtgtga cccgtcttcg cttcggcctt aaggacgaaa gcaaggctga tacagactac
    32761 ttgaaggcgc gtgatggcgt tgtgacagta gttcaagcag gtggtcaata ccaagtggtt
    32821 atcggcaacc atgtcccaga tgtttatgca gtggtgcaaa aagttgcagg tattgcagga
    32881 gatggaagtt tggatattga tgaaggcgat ggtccaaaag gaaatctctt tgaacgcttt
    32941 attgatttgt tatcaggtat cttccaagct tttttgggac ctttggctgc tgctggtatc
    33001 attaaaggta ttgttgccat tatggcttcg cgaggcttga cgagtgataa tagtgctata
    33061 tatgctatct taaatgcggc aggtgacggt ttcttccaat acttaccatt gttagtggct
    33121 ctgacatctg ctcgcaagtt taagatgaat gaatttacag ccctagcaat cggtatggcc
    33181 ttgatttacc caaccttgcc aggatcgctt gcagcattga aagaggcagg actggataat
    33241 gtatttggta ttccatttgt tttaccaaca gcaggtagct acttgtcaac ggttatccca
    33301 gctattctcg caacgtgggt ggcttcaatt attgagaaaa acatccgtaa aataacacca
    33361 gatgttgtca aactctttgt tgttccattt gtaactatct tgcttgctgt tccattgacc
    33421 ttcttagtgg ttggtcctgt cgcaaacttc atctctgatg tcttgtcaaa tgcatttact
    33481 gcaatcatga actttagtcc attgctctat ggtttgattc ttggtgcaac ttggcaagta
    33541 ttggttatgt ttggaatgca ctgggcagtt gtcccattgg caattatgca agtagcatca
    33601 aacggtatgt cttcaattct tgtaccagcc ttacttccaa actttacaca gaccggggtt
    33661 cttttggcaa tcatgttgaa gaccaaggag tctaaggtta aaacagtttc tatgcctgca
    33721 ttggtttcat ctatttttgg tgtgactgag ccagctatct acggtgtgac ccttccaatg
    33781 aaaacaccgt tctttatctc atgtgctgtt tcaggtgtga ttggtgctgc cactatgttc
    33841 ttcaatgtaa caggttactc tgtaggtggt atgggtgtct tcttgtatcc gtctctagtt
    33901 aatccagcaa acggtgatat gtcaggtatg attgctgcga ttattttgac agtagttgca
    33961 atcgtcgcat ccttcgctat ccaaatggcc cttccagttc cttacttata tggagagcca
    34021 actgaaaaaa agtccgttga agaaacaaag gagtctgttc cagaattaaa agaaattaag
    34081 caagagatca ttgccagtcc actaatcggt aaagtagtta aattagaaga tgttcctgat
    34141 gcagtctttg cttcaggtgc aatgggtaaa gggattgcta tcgatccgct agatggtatc
    34201 cttgtttctc cagctaaggc tgaaataact cttgtattcc caaccaaaca tgctattggt
    34261 cttcgtactg aaaatggagc agagctcctt atccatattg gtatggatac agtctctcta
    34321 gctggtaaag gctttgaatc cttcgtccaa gtaggtgacc aagttgaagc aggacaaaaa
    34381 ttgctggaat ttgatctcca ccaaatcaaa gcagctgacc taccggtcat cactccaatt
    34441 atcgtgacca atacagctga ctatgaggac atcttggtaa cccaagaaag ccaaattaac
    34501 agtggtgatt acctattgac aacggtgaaa taattatatt ttcgtttaga aacaatgaaa
    34561 tatttctata caaaacagga aataactatt tgtatagatt atcgtaacaa atctaaatag
    34621 atgctaatcc acgccaaacg catgaagaaa atttcgtttt cagaaagcga aaatcataac
    34681 caaagatcaa tcaaagtagt acactagaat agaggtgaac tacaatgatt gattttcttt
    34741 tatccataga ggagcacaaa gaagagtatg atagccgtca agcatggaaa atccgctatc
    34801 ccttatctac tattctcttt ctagttttcg cttgtcagtt ggcagggatt gaaacgtgga
    34861 aagagatgga agatttcata gaaatgaacg aatctgtctt gggagaatac gttgacttga
    34921 gtgttggttg tccctctcat gacactttgg aacgtgttgt gagtatggtc aatccagatt
    34981 tcttgaagga actgaaactg tcctttgaag tctcttctga agcaactgat ttttccaaat
    35041 tgattgctgt tgacggaaaa acgattcgag ggaatcgagg aaaacaccaa tctcccactc
    35101 atattgttac tgcatatgat ggagataatc ggtttagtct tggacaggtc gctgttgagg
    35161 ataaaagcaa tgaaatcaca gccattcctc gcctcttgcg tcagctggac cttcgtaaga
    35221 gtgtcgttac gattgatgct atgggtaccc agacagatat cgtagatgtg attattagcg
    35281 gtaagggtga ttattgcttg gcagtcaaag gaaatcaagg caatctccat gaggatattg
    35341 acctctattt tagtgatgcc aaattgttat ctaagttgac agagaaaggc tgtcattatc
    35401 agaccattga aaaggcacgc agtcagattg aggtgaggga ctactggatt tctcacgatg
    35461 tgaaatggtt gagtcaacga catccgaaat ggaaaaaact tcgcggaatt ggtatggcta
    35521 agaataccat tgataaagac ggtatcatta cggaagaagt tcgatacttt atcctcagtt
    35581 tcaagggtga tgtgcagact ttttcacagg ttgttcgtgg tcattggtcg gttgagagcc
    35641 tacattggtt gttagatgtg gtttaccgag aagataagaa ccaaacctta ga
//
LOCUS       DASGAC010000005        30849 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.005, whole genome shotgun sequence.
ACCESSION   DASGAC010000005 DASGAC010000000
VERSION     DASGAC010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 30849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30849
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.005"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            110..1630
                     /gene="malQ"
                     /locus_tag="U1335_000192"
     CDS             110..1630
                     /gene="malQ"
                     /locus_tag="U1335_000192"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEM5230711.1"
                     /translation="MKVRQSGVLMHISSLPGKYGIGSMGQSAYEFVDFLVRTKQRYWQ
                     ILPLGTTSYGDSPYQSFSAFAGNTHFIDFDILIDKGWLAAEDLHGVDFGQNPTEVDYA
                     AIFYARRPLLEMVVANMKAQGLPEDYWMFLGENDFWIHTFAEYMAIKEHFDNKPWIDW
                     EDQGARLRYHDTLEYYRHLLADRIDYHRITQYLFFSQWKALKAYANAKGVEFVGDMPI
                     YIAADSADMWANPHFFKTDEEGKPSVVAGCPPDAFSEIGQLWGNPIYDWEAMKHDGFT
                     WWVARLRESFKIYDMVRIDHFIGFASFWEIPAGEETAVNGYRVEAPGFELFETIKYHL
                     GDLNIIAEDLGTVTDKVIQLRERTGFPGMKVLQFAFDPEGDSIEMPHNHPNNVVAYTG
                     THDNDTILGWYENETTKESRAFLDKYSNRREGETVSHALFRLLFGSPAFMAVATMQDL
                     LGLDGSARMNLPNTLGGNWTWRMTADQLTPEIEAELLDLTETYRRVNVHLADEKSE"
     gene            complement(1672..1866)
                     /locus_tag="U1335_000193"
     CDS             complement(1672..1866)
                     /locus_tag="U1335_000193"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230712.1"
                     /translation="MKHFRKNYWLYWYLYLIFYLFAKMIFPDLTNILAAIGFWSLVAA
                     LLHTIYYWISYWLYVRKQKK"
     gene            1994..2518
                     /locus_tag="U1335_000194"
     CDS             1994..2518
                     /locus_tag="U1335_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230713.1"
                     /translation="MKRPIHLYIFVVLSSIASVLRGFNIFFAKYDEAVVRQLLQNFNV
                     EGIDEAYFTYMRESINFQTNLVNKAFAVVLLLAVIATIVLLFLKKNEQASYTYLGYLF
                     VTLLFSTYALIGEKGLGQIYTDSVMRQSVEAQAMMNYIIRVVLFAIYFGVTIFFHLRK
                     PKEKPSTAINSTDI"
     gene            complement(2568..3521)
                     /locus_tag="U1335_000195"
     CDS             complement(2568..3521)
                     /locus_tag="U1335_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEM5230714.1"
                     /translation="MKTFLRRKGIACQLLAAIFIVGINLQSPPSASANARGDDYPYTA
                     VDAVDPWRLYTRQCTSFIAFRLSKVNGFEIPPAYGNAEVWGYRAQREGYRVDMSPAVG
                     SVAWWTSPMHVAWVSSIQGDMVEIEEYNYGTRYTYNRRLIHKNSVSGYIHFKDLAGSP
                     VSQTSPAPTQTHTSGLANSGTYTFTQQAPIKNEAKQSSTTLDYYYAGESVRYDRVLTA
                     DGYQWISYVSYSGQRRYIPIKQVQTSPTPQQTNKNLPSSGTYTFSSKAIVRNSPSQSA
                     SEITYYGAGSSVRYDRVVTSEGRQWISYISYSGARRYIAIP"
     gene            complement(3701..5389)
                     /locus_tag="U1335_000196"
     CDS             complement(3701..5389)
                     /locus_tag="U1335_000196"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005591476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEM5230715.1"
                     /translation="MNQKQVIAERLAAILPSLEVEAIYNLLEKPKSSEMGDIAFPAFS
                     LAKVERKAPQAIAADIVEKLDPTGFEKVVATGPYVNFFLDKAAISHQVLTDVITEKDQ
                     YGKLNIGQGRNVTIDMSSPNIAKPFSVGHLRSTVIGDALANIHEKLGYNPIRINHLGD
                     WGKQFGMLIVAYKLWGDKAAVEADPISELLKLYVRINAEAEEKPELDEEARQWFKKLE
                     DGDPEAHELWQWFRDESLVEFNRIYDKLGVTFDSYNGEAFYNDKMDEGIQILEEKGLL
                     QESKGARIVDLESYNLPPALIMKTDGATLYITRDMATAMYRKRTYDFVKSIYVVGQEQ
                     INHFKQLKAVLKEMDFDWSDDMTHVTFGLVTKDKKKLSTRKGNIILLEPTLDEAISRA
                     LTQIEAKNPDLENKEEVAHAVGVGAVKFYDLKTDRDNGYDFDLEAMVSFEGETGPYVQ
                     YAYARIQSILRKANFVPSAENDYKLADAESWDIIKHIQNFSNVVERAGDKFDPSLIAK
                     YAINLAQAFNKYYAHTRILDESPERDSRLALAYATGLVLKEALRLLGVKAPKKM"
     gene            5496..5936
                     /gene="argR"
                     /locus_tag="U1335_000197"
     CDS             5496..5936
                     /gene="argR"
                     /locus_tag="U1335_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HEM5230716.1"
                     /translation="MNKAGRHDLIKSMIRQEKIGRQTDIQQGLEARGVVVTQTTLSRD
                     LRELGVIKIHENGQSFYSLAIEEERVNFIQLLAQYAYKVDRASFILVLHSELGEAALM
                     ANIIDAEKPETILGTLAGANTLLVICRDEVAAQQVEAEINYYLN"
     gene            5951..8491
                     /gene="mutS"
                     /locus_tag="U1335_000198"
     CDS             5951..8491
                     /gene="mutS"
                     /locus_tag="U1335_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HEM5230717.1"
                     /translation="MATEKISPGMQQYLDIKANYPDAFLLFRMGDFYELFYEDAVEAA
                     QILELSLTSRNKNAENPIPMAGVPYHAAQQYIDTLVELGHKVAIAEQMEDPKQAVGVV
                     KREVVQVITPGTVTDSSKMGADSNYLVAIDRQGVQFALSYMDVSTGQFFVTSLDDFTS
                     LCGEIRNLRARELVIGYALSEEEEQVFSNQMNLLLSFEDEVTEDVQLIDNYLTDLEKA
                     AAGKLLSYLHRTQMRDLSHLQKVVHYEIKDYLQMDYATKSSLDLLENGRTGKKHGSLY
                     WLLDETKTAMGMRLLRTWIDRPLIDLKRIENRQAVVQVFLDYFFERSDLVEALKGVYD
                     IERLASRVSFGKTMPKDLLQLSQTLGNIPAIKNILLQINEPSLGNLVAGLDPIPELHA
                     LISSAIDPEAQGTITDGNIIRTGFDETLDQYRLVMREGAGWIAEIEAKEREASGINNL
                     KIDYNKKDGYYFHVTNSNLGNVPDHFFRKATLKNSERYGTEELAKIEGQMLEARDKSA
                     NLEYEIFMRIRQEVEKYIARLQKLARTIATIDVLQAFAVVAEQQHLVCPRFTDQRELT
                     IDRGRHAVVEKVMGKQTYIPNSIHLSTDTHMQLITGPNMSGKSTYMRQLAVIVIMAQM
                     GSYVPADQAELPIFDAIFTRIGAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDE
                     LGRGTATYDGMALAQSIIEYIHDKIGAKTLFATHYHELTDLSQTLEHLENVHVSTLEK
                     DGQVTFLHKIAQGPADKSYGIHVAKIAGMPEELLQRADRILQTLENQAPTAPAKSAPS
                     VVAEPSGQIDLFADTPSHPVLDELEKLDIYNMTPMEVMMAVAELKKKI"
     gene            complement(8571..9008)
                     /locus_tag="U1335_000199"
     CDS             complement(8571..9008)
                     /locus_tag="U1335_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM5230718.1"
                     /translation="MSDYHYSKQLCYSFYQVNKLFNQFYLKNLKEFDLTYTQYLVLVV
                     LWEKAPLTLKELGEKLDLASNTLTPLLKRLEAKGYIQRSIPLGDKRQLLIQLTEDGQK
                     LQAILEDKLLSCFRQLDGLTIEKKQSYVKYNQELIESLQNYLD"
     gene            9141..9821
                     /locus_tag="U1335_000200"
     CDS             9141..9821
                     /locus_tag="U1335_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase
                     domain-containing protein"
                     /protein_id="HEM5230719.1"
                     /translation="MKKALIVLTNTEQYGEHERLTGLWLSELTHFYDELVKAGYDADF
                     VSPKGGYVPLDPHSLTMMDDVDRTYYKDADFRNRALGQTLRPEEVKATDYELIYYTGG
                     HGVMWDFPDSVEIAELASQIYQNGGLVTAVCHGVAGLLPIKDENGQPLIEGKVVTGFT
                     NQEEELNGTADLVPFLTEAALREKGAKVEIGTAFSPVVRQDDRILTGQNPQSARALGQ
                     TIVSMLTN"
     gene            9834..11177
                     /locus_tag="U1335_000201"
     CDS             9834..11177
                     /locus_tag="U1335_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010012388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM5230720.1"
                     /translation="MYQYDVTFIGSGHANWHAAVDLAKAGKKVAIVEKDITAGTCTNY
                     GCNAKFLLESPFEFMDGLARYEKAGIAKTGEISWEKLMAYKKEEIPTYSPMLEGMFAS
                     LSIDLLKGHGQLKDLHTVMVDDKEITTEFVVIGTGQRPARLNVPGNEWFQDSRAFLDM
                     DHMPERIVFIGAGIISLEFATMASLLGSEVHIIEFADRALAAYPEQMVASVVDKMTAD
                     GVSFHFNQAVVSAEKTASGLLVKTAQGLEIETDTIIDATGRVSNVEGLGLEEVGVDFD
                     RTGIKVNEFMQTSQPTIYASGDVVSKTIPRLTPTASFESSYIAEHILGNPAPITYPVI
                     PNVVFTLPRLAQVGVTVAEAKANPEQYKIVDIPFGQQLKFQTKLETEAHFTLIVGSDK
                     TLKGAALIGHEAGEMINLLTLIINQQLTATDLNRMIFAFPATTYALLSHVKTALM"
     gene            11193..11819
                     /locus_tag="U1335_000202"
     CDS             11193..11819
                     /locus_tag="U1335_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018363531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEM5230721.1"
                     /translation="MVTNDFNEIMFGRKSIKVYDETVTIDHEEMLEMLNKAITAPSSV
                     NLQPWRFVVVESAAAKAKLRPMVRFNTKQVDTASAVILIFADIKPQDRTEVIYDRAVA
                     EGKMPQEVRDYQVPVIKSMYDALSPATMREVVKMDASLAAMQLMLVARSHGYDTNPMS
                     GFDPEEMVATFDLDPDRYIPVLIVSIGKAKEPGFDSVRIEAEKITDFK"
     gene            11862..12515
                     /locus_tag="U1335_000203"
     CDS             11862..12515
                     /locus_tag="U1335_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HEM5230722.1"
                     /translation="MRVHNLQKWGAIGFLINASIYLGTELIAAIGTGYPLSYVYGRQF
                     ISALGVYNGQQVAGVPENFSNWAIVMNSGFILTAIGFVFSYALLIFSKIRRRHPILAI
                     LILLIVTLFGLGSLLVGFFQGGVPGQDGLHGFGARLSFMMGNSTLLLTGLFLPDQKMV
                     YRSISIFLGLCGFVAAGLLQTAIAENQVAVMAIYERLTVYPITAWQIVTGLTFLKND"
     gene            12637..13080
                     /locus_tag="U1335_000204"
     CDS             12637..13080
                     /locus_tag="U1335_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family transcriptional regulator"
                     /protein_id="HEM5230723.1"
                     /translation="MKVKLAISPKIVEDLVTIEAQAMSEQVTHLVSYIQNLDKQRSSL
                     TVKKGEQVYLVEHDEIVRLYLEDRVLQVETVETTYTSNLRLYQVKEDLPANFLQISQS
                     EIIYIKQLDHLKLTANGLVKLVMKNGSVTYSSRRYLKVIKERLGL"
     gene            13077..13517
                     /locus_tag="U1335_000205"
     CDS             13077..13517
                     /locus_tag="U1335_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3021 domain-containing protein"
                     /protein_id="HEM5230724.1"
                     /translation="MKKYILSASLGIAIGTIISIITSAVFGQGAYLPLNPFSTMGAYY
                     LSNFSQVTVMLICVAIWAAIGLLFQLADTIFEQDWSLLRMIATHFCITALGFTPLGIL
                     AGWFPVKLGTLIFFWFLFILVYALLFFLNHRKMERQIKDINGRL"
     gene            13551..13724
                     /locus_tag="U1335_000206"
     CDS             13551..13724
                     /locus_tag="U1335_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230725.1"
                     /translation="MKIILTIVYSLGVVWNILFLAVNVGRIPVINLLWPAVILVACAI
                     NLYFLWTRKQESE"
     gene            13865..16036
                     /gene="nrdD"
                     /locus_tag="U1335_000207"
     CDS             13865..16036
                     /gene="nrdD"
                     /locus_tag="U1335_000207"
                     /EC_number="1.17.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HEM5230726.1"
                     /translation="MNVQENVLPSIELLVLKRDGRTVSFDQDKIFSALRRANQELEHP
                     VSEAGLKIVLEAVLAEIGRRFEKDVQIYEIQTVVEQELLKAHLYDLAELYIQYRTRRD
                     FRRHQATDINFEIHKLLSKDQSVVNENANKDADVFNTQRDLTAGIVGKSIGLKLLPAH
                     VANAHQKGDIHYHDLDYSPYTPMTNCCLIDFKGMLAQGFKIGNADVESPKSIQTATAQ
                     ISQIIANVASSQYGGCSADRIDEVLAPYAEFNYQKHLKVAKDWVLADKQEEYARAKTQ
                     KDIYDAMQSLEYEINTLFTSNGQTPFTSLGFGLGTSWFEREIQKAILNIRIKGLGREG
                     RTAIFPKLIFTVKRGLNLEPDSPNYDIKQLAIECATKRMYPDMLSYDKIVELTGSFKV
                     PMGCRSFLQGWKDENGQDVTSGRMNLGVVTVNLPRIAMESAGDKDKFWEIFAERMAIA
                     KDALVYRVERVKEATPANAPILYQYGAFGKRLAKTDAVDEVFKNRRATVSLGYIGLYE
                     VATVFYGGEWETNPEAKDFTVDIIKKMKALVEDWSDEYGYHFSVYSTPSESLTDRFCR
                     MDTEKFGIVKDITDKEYYTNSFHYDVRKNPTPFEKLDFEKIYPAVGASGGFIHYCEYP
                     VLQQNPKALEAVWDYAYDRVGYLGTNTPIDHCYACDFEGDFEPTERGFKCPNCGNSDP
                     KSVDVVKRTCGYLGNPQARPMVKGRHKEISARVKHMNGSSL"
     gene            16413..16619
                     /locus_tag="U1335_000208"
     CDS             16413..16619
                     /locus_tag="U1335_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEM5230727.1"
                     /translation="MWGIVPDGEGFVVNGRAVESDKDYQIVTNSFVWSGKDNYDDFHK
                     AEIVQDLGLDTDIISEFFKRQYGD"
     gene            16621..17112
                     /locus_tag="U1335_000209"
     CDS             16621..17112
                     /locus_tag="U1335_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5230728.1"
                     /translation="MELRRPTVADKETILEMLAEFEKAGSAMDGGFISKDVDFEDWIL
                     RNQDYEAGINLPEGFVPSIQYVSFDQTGRALGFLSLRLRLNDFLLNKGGHIGYSIRPT
                     ERGKGYAKDQLRLGLQEAATKNISKVLVTCSTDNEASRKTIVACGGVLEDIRDGIERY
                     WIE"
     gene            17127..17699
                     /gene="nrdG"
                     /locus_tag="U1335_000210"
     CDS             17127..17699
                     /gene="nrdG"
                     /locus_tag="U1335_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HEM5230729.1"
                     /translation="MREQTWNNPKPGEWKSEELSQGRIMDYKAFNFVDGEGVRCSLYV
                     SGCLFHCPGCYNVATWSFKAGIPYTKELEDRILADLGQPYVQGLTLLGGEPFLNTGTV
                     LPLVKRVRTELPDKDIWSWTGYTWEELMLETPDKLELLSQLDILVDGRYDKNKRNLML
                     QFRGSTNQRIIDVQKSLQEKRVVLWDKLKK"
     gene            complement(17794..17866)
                     /locus_tag="U1335_000211"
     tRNA            complement(17794..17866)
                     /locus_tag="U1335_000211"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17831..17833),aa:Lys,seq:ctt)
     gene            complement(17875..18068)
                     /gene="ssrS"
                     /locus_tag="U1335_000212"
     ncRNA           complement(17875..18068)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="U1335_000212"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(18278..18694)
                     /locus_tag="U1335_000213"
     CDS             complement(18278..18694)
                     /locus_tag="U1335_000213"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230730.1"
                     /translation="MKIERNFGEVFPYSLHDARITKIEHLDNQLILHMDSLFYYTDNQ
                     TEQIHKATILFEQVDKEDVEFFVFEDTVTGDFSGTCIGLEEYQKKYQDSEFEVIVETY
                     NWRRAVFQGWLWTGATPVTCLMNIFYSGKMLYQIGE"
     gene            complement(18760..20043)
                     /locus_tag="U1335_000214"
     CDS             complement(18760..20043)
                     /locus_tag="U1335_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HEM5230731.1"
                     /translation="MPANLALRMRPKSIDEVIGQEHLVGPGKIIRRMIDANMLSSMIL
                     YGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRLQEIAEEAKFSGGLVLLLDEIHR
                     LNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLKTSHIRQALE
                     LALTDSERGFDFPVTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDL
                     DAVENSLQKSYISMDKNGDAHYDILSALQKSIRGSDVNASLHYAARLIEAEDLPSLAR
                     RLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVVVDLALSPKSNSAYL
                     AIDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKL
                     LTADYFTANNTGKYERALGMTQEKIKQLKQHKKNV"
     gene            20113..20448
                     /locus_tag="U1335_000215"
     CDS             20113..20448
                     /locus_tag="U1335_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphohydrolase"
                     /protein_id="HEM5230732.1"
                     /translation="MTELTVSVLEEYLRDHYGTTVPEQSLFMKLVEEIGEVAELLNQR
                     AGRKMMDGEDDSSARLAEELADVIHYAVALAAVNQLDLTKSILEKDKRASVKYGREIN
                     LLEFIEKRK"
     gene            20450..20920
                     /locus_tag="U1335_000216"
     CDS             20450..20920
                     /locus_tag="U1335_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005591596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3013 family protein"
                     /protein_id="HEM5230733.1"
                     /translation="MAKHGFLDVLEAALDKHFTYDYELNWDKKNHAVELAFILEAQNA
                     AGIETVDDEGNASAEDIFLEEYVLFYNQDKSRFDEEDYLVALPFDAKKGFSAEFLTYF
                     AGFLKDTADQGFDDLMDFLADPEAQEFAIAWDSEAFEKGRADLVEGEFYPYPRY"
     gene            20922..21275
                     /locus_tag="U1335_000217"
     CDS             20922..21275
                     /locus_tag="U1335_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEM5230734.1"
                     /translation="MVHEMLLAPKPFEMMKSGQKTIELRLYDEKRKYIRIGDFIRFYC
                     TENQTQTIDVEVLDLHIFDNFAQLYKELDLLSCGYTQSSIREAKPEDMEVYYSREQLE
                     QYGAVGIELRVIDSI"
     gene            21746..22699
                     /locus_tag="U1335_000218"
     CDS             21746..22699
                     /locus_tag="U1335_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001099287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEM5230735.1"
                     /translation="MNSWQELTIHVHRDAEEAVSNLMIETGSQGVAISDSADYVGQED
                     RFGELYPEVEQSDMIAITAYYPDTVNIEEVKADLAARLADLTGFGLETGQVSLESQEL
                     AEEDWADNWKKYYEPARITHDLTIVPSWTDYEVTAGEKIIRLDPGMAFGTGTHPTTKM
                     SLFALSQVLRGGETVIDVGTGSGVLSIASSLLGAKEIYAYDLDEVAVRVAQENIDLNA
                     NTSNIHVAAGDLLRGVDIKAEVIVANILADILIHLTEDAYRLVKEEGYLIMSGIIADK
                     WDMVRASAEAAGFFLETHMIQGEWNCCIFKKTTDRSGVIGG"
     gene            22701..23447
                     /locus_tag="U1335_000219"
     CDS             22701..23447
                     /locus_tag="U1335_000219"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEM5230736.1"
                     /translation="MQQYFVNGRAPQGVFQISDKDTAKHMFSVMRLQADEQIVLVFDD
                     GIKRLARVVDSQNQSVEIIEELADNVELPVSVTIAMGFPKGDKLEFVAQKATELGMTA
                     LWAFPADWSVVKWDGKKLAKKAEKLEKIAQGAAEQSKRNRIPAVRLFEKKADFLAQLA
                     GFDQIILAYEEAAKEGEQANLVKILSSLETGQSVLVIVGPEGGVSPEEVAAFEGAGAV
                     KTGLGPRILRAETAHLYALSAISYATELLR"
     gene            23451..24167
                     /locus_tag="U1335_000220"
     CDS             23451..24167
                     /locus_tag="U1335_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HEM5230737.1"
                     /translation="MFALGTIINTLAVAVGGLLGTWFGHLLKERHQSGLTLASGVAIL
                     FLGISGTLTGLLRVETGQLVTQNTMLFVLSLAFGTLIGEVLHIEGWFERLGIWLREKS
                     GNSQDSQFLDAFLTASLTVCIGAMAILGAIQDGLTGDYRLLAVKSVLDFIIIFIMTAS
                     LGKGAGFSAVPVFLFQGSVTLLARLIEPLMTDQALANLSFIGSVLIFCVGVNIIWDKK
                     IRVANMLPAILIAVIWSFFT"
     gene            complement(24214..26697)
                     /locus_tag="U1335_000221"
     CDS             complement(24214..26697)
                     /locus_tag="U1335_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2',3'-cyclic-nucleotide
                     2'-phosphodiesterase/3'-nucleotidase"
                     /protein_id="HEM5230738.1"
                     /translation="MNFRFSKCAVALTLALLAASNPKLAQAEEILNTTPASSTEASQA
                     VPVESDTTEEADNTESPVPATTEAENPSSSETAETSDPTSETTDSTASEARTVTPAAT
                     ETSQPVEGQTVDVRILATTDLHTNLVNYDYYQDKPVETLGLAKTAVLIEEAKKENPNV
                     VLVDNGDTIQGTPLGNYKSIVDPIEEDEQHPMYAALETLGFDVGTLGNHEFNYGLAYL
                     EKVIRTANMPLVNANVLDPTTKDFLYTPYTIVKKTFTDTEGKKVTLNVGVTGIVPPQI
                     LNWDKAYLEGKVIVRDAVEAVRDIIPTMRENGADIVLVLSHSGIGDDQYEVGEENVGY
                     QIASLSGVDAVITGHSHAEFPGTAEKPSFYAKYSGVDDTNGKINGTPVTMAGKYGDHL
                     GVIDLNLVFKDGKWTTTSSKAAIRKIDTKSSVADGRIIDLAKEAHNETINYVRQQVGE
                     TTAPINSFFALVQDDPSVQIVNNAQIWYAKQQLAGTSEANLPILSAAAPFKAGTRGDA
                     SAYTDIPAGPIAIKNVADLYLYDNVVAILKINGAQLKEWLEMSAGQFNQVDPSSTEPQ
                     NLVNTDFRTYNFDVIDGVTYQYDITQPNKYDRNGKVVNETASRVRNLQYNGQDVTADQ
                     EFIVVTNNYRANGTFPGVREASVNYLLNLENRQAIINYIISEKVINPTADNNWTFTDS
                     IKGLDLRFLTADRAKDLLADQEGLVYLQASAENEGFGEFKFVYTEPKVVTPPTGQTAT
                     DNQTSSGQSGVQITLPSGQVITLPAEKTTAPAPKHKLATTAKTSTSSATTQAGQKTLP
                     ATGEASSMLSLIGISLMGLVGAFRKKNEN"
     gene            26954..29155
                     /locus_tag="U1335_000222"
     CDS             26954..29155
                     /locus_tag="U1335_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEM5230739.1"
                     /translation="MKEINYTGEEVVALTASYLPADDVAFVEKALNYATEAHKLQFRK
                     SGEPYIVHPIQVAGILAGLKLDAVTVACGFLHDVVEDTEVTLDDMEAEFGPEVRHIVG
                     GVTKLGKVEYKSHEEQLAENHRNMLIAMSQDMRVILVKLADRLHNMRTLKHLRKDKQE
                     RISRETMEIYAPLAHRLGISSIKWELEDMSFRYLNEVEFYKITHMMREKRREREELVN
                     EVVDKLREYTEERHLHGQIYGRPKHIYSIYRKMHDKKKRFDELYDLTAIRCLMDTPSD
                     VYAMLGYIHELWKPMPGRFKDYIASPKANGYQSIHTTVYGPKGPIEFQIRTVEMHQVA
                     EYGVAAHWAYKRGGKATASEKELRWINNLIELQEGAGDAQTFVNSVKDDIFTERIYVF
                     TPDGAVRELPKDSVPIDFAYEIHTKVGERATGAKVNGRMVPLTTKLKTGDQVEIITSA
                     NSFGPSRDWVNLVKTHKARNKIKQFFKNQDKELSVSKGREMLQNLLQENGYVPNQYLD
                     RRHMDEVLQKTSYKTDESLFAAVGFGEISAVSVFNRLTEKERREAERAKAKAAADELV
                     NGGEVKHDNKDSLKIRHEGGVVIEGASGLLIRIAKCCNPVPGDEIVGYITKGRGVAVH
                     RVDCMNLKSQENYDVRLIDVGWEDENSTKEYMANIDIYGLNRSGLLNDVLKVLTNASK
                     NISSVNAQPTKDMKFATIHVSFGISNLATLTSLVDKIKSVPEVYSVKRTNG"
     gene            29157..29600
                     /locus_tag="U1335_000223"
     CDS             29157..29600
                     /locus_tag="U1335_000223"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000691442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HEM5230740.1"
                     /translation="MKIVLQRVSQASVTIDGSIHGQIDQGLLLLVGVGPDDSQEDLDY
                     AVRKIVNMRIFSDEAGKMNKSVQDVAGKILSISQFTLFADTKKGNRPAFTGAAAPALA
                     SQLYDAFNQALSAFVPVEVGIFGADMAVSLVNDGPVTIVLDTKNR"
     gene            29663..29848
                     /locus_tag="U1335_000224"
     CDS             29663..29848
                     /locus_tag="U1335_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230741.1"
                     /translation="MKNLLTNHFFYLVVAFTLILVIYFSGIDKRWIILASFLYFIPSQ
                     ILYRRRLKERLQEDQPK"
BASE COUNT         8387 a         6216 c         7548 g         8698 t
ORIGIN      
        1 taggaacgaa cagaattaaa ggaaaatccc ttgatttgtt accgttttca gtatataatg
       61 aaaaagagaa aacgtttgcg tcgtgtaagc gggttagata ggagagctta tgaaagtaag
      121 acagagtggt gtgctgatgc acatttcatc attaccaggc aaatatggaa ttggttccat
      181 gggacaatcg gcctatgaat ttgttgattt tttggtaaga actaagcagc gctactggca
      241 gattttgcct ttgggaacaa ccagttatgg agattctcct taccagtcat tttcagcttt
      301 tgcagggaat acccatttta ttgatttcga tatattgatt gataaaggct ggctggcagc
      361 agaggattta cacggtgttg actttgggca gaatcctaca gaggtagatt acgcagccat
      421 tttttatgct cgccgtccat tactggagat ggtagttgcc aacatgaagg cacaaggctt
      481 gccagaagat tactggatgt tcttagggga gaatgacttt tggattcata cttttgcgga
      541 gtatatggct ataaaagagc attttgacaa taagccctgg attgattggg aggatcaagg
      601 ggcgcgctta cgttaccacg ataccttgga atattatcgt cacttgttgg cagatcgaat
      661 tgattatcac cgcattacac aatatttatt cttttcacaa tggaaggctt taaaggctta
      721 tgccaatgcc aaaggtgttg agtttgttgg ggatatgccg atttatatcg cggctgattc
      781 tgctgatatg tgggccaacc ctcatttctt taaaacggat gaagaaggca agccgagtgt
      841 ggttgcagga tgcccaccag atgccttttc ggaaattggt cagctttggg gtaatccaat
      901 ttatgattgg gaagcgatga agcatgacgg atttacttgg tgggtggctc gtttgcgtga
      961 atcctttaag atatacgata tggtacgtat cgaccacttt atcggctttg cctccttctg
     1021 ggaaattcca gcgggtgaag aaacagcggt caatggctat cgtgtcgaag caccaggttt
     1081 cgaactcttt gaaaccatca agtaccactt gggtgacttg aatattatcg cggaagattt
     1141 gggaactgtg acagataagg tcattcaatt gcgtgaaagg actggtttcc caggcatgaa
     1201 agtcttgcag tttgcctttg atccagaagg agacagcatt gaaatgccgc ataaccatcc
     1261 taataatgtg gtggcatata cgggaaccca tgacaatgat acgattcttg gctggtacga
     1321 aaatgaaaca acgaaagaat cgcgtgcatt cttagataag tacagcaatc gtcgtgaggg
     1381 cgaaacggtc agtcatgctc ttttccgcct gctctttggt tcacctgcct ttatggctgt
     1441 ggctaccatg caagacttgc tcggcttgga tgggtctgct cgtatgaact tgccaaacac
     1501 ccttggtggc aactggacct ggcggatgac ggcggatcaa ttgacaccag agattgaagc
     1561 ggaattgctt gatttgacag aaacctatcg tcgggttaat gtgcatttgg ctgatgaaaa
     1621 gtcagaataa gaacaatctc ctctaagcag ctaacttaga ggagattgtt cttatttctt
     1681 ctgtttacgg acatagagcc agtagctaat ccagtagtag atggtgtgga gcagggcggc
     1741 aacaaggctc caaaaaccga tagcagccaa aatattagtg aggtcaggga aaatcatttt
     1801 tgcaaataga tagaagatta ggtagagata ccagtaaagc cagtagtttt ttctaaaatg
     1861 tttcatcgct tctcctcctt actacttttc tttattatag cattttaata tatttatttc
     1921 aacttgttca caaaatcaca ttgacaaagc atggtttttg gagtagaata agactaaaat
     1981 taggaggtgc catatgaaaa gaccaattca tctgtatatt tttgttgtac tgtcatctat
     2041 tgcgagcgta ttgcgtggct ttaatatatt ttttgcgaag tacgatgagg cggttgtgcg
     2101 tcaattgttg cagaatttta atgttgaggg gattgatgag gcatatttta cctacatgag
     2161 agaatctatc aatttccaga cgaatcttgt caataaggca tttgcagttg tgttattgct
     2221 tgctgtgatt gcgacgattg tgttgctttt cctcaagaaa aatgagcagg cttcttatac
     2281 ctacctgggt tatctttttg taactctcct attttcgacc tacgctctta ttggtgagaa
     2341 agggttgggt caaatttata cggattcagt tatgcgtcag tcagtagagg cgcaggcaat
     2401 gatgaattat attattcgag ttgtcctatt tgccatctat tttggggtaa ctattttctt
     2461 ccatctgcgt aaaccgaaag aaaaaccgag cacagctatc aattctactg atatttaatc
     2521 atctaaaaaa ctgcatggtg catagtgaac ctgcagtttc ttttgtttta tgggatggcg
     2581 atgtagcgtc gagcacctga gtaactgata tagctgatcc actggcgtcc ttcggatgtg
     2641 acaactcggt catagcggac agaagaacca gcaccgtagt aggtgatttc actggcggat
     2701 tgactagggc tattgcggac aatggctttg ctagagaagg tgtaggtacc tgaggatgga
     2761 aggtttttat ttgtttgttg aggtgtagga cttgtttgta cctgtttgat aggaatgtag
     2821 cgtctttgac cactatagct gacatagcta atccactggt agccgtcagc tgttagaacc
     2881 cggtcgtagc gtacgctctc accagcataa tagtaatcca aggttgtgct agattgtttg
     2941 gcttcatttt taattggtgc ttgctgggta aaggtatagg taccactatt tgctaagcca
     3001 gatgtgtgcg tctgagtagg tgcaggactg gtctgactga caggagagcc agctaggtcc
     3061 ttgaagtgaa tatagccact gacagagttc ttatggatca gacggcgatt gtaggtgtat
     3121 cgagtaccgt agttgtattc ttcgatttcg accatgtcac cttggatgct agatacccag
     3181 gcaacgtgca taggggaggt ccaccaagct actgatccca cggcagggct catatccacg
     3241 cgataccctt cacgctgcgc tcggtatccc cagacctccg cattaccgta agctggtggg
     3301 atttcaaaac cgttgacttt actaagtcga aaggctataa aggaggtgca ctggcgtgtg
     3361 tagagtctcc atggatcgac tgcatcaact gctgtgtagg gatagtcatc tcctcttgca
     3421 ttggctgagg ctgaaggtgg ggattgtaaa ttgataccga caataaaaat ggcggctaga
     3481 agctgacagg cgattccttt tcttctcaag aatgttttca ttatttctcc ttgtgtagta
     3541 gatgtagagg tatcacgtgt acctcctatc tatatattcg taattgaaat gaatcttttt
     3601 gattttcatt tgggataaag agttgttgtg ataaggaatc tgaaacgaga gtaggcaatg
     3661 tggtagaaaa aaagcctcgg ctgatggccg aaggctttga ttacattttt tttggtgctt
     3721 ttacgccgag aagacgtaga gcttctttga ggacaagtcc tgttgcgtag gcaagtgcta
     3781 gacggctatc acgctctggg ctttcatcca agatacgcgt gtgtgcgtag tacttgttga
     3841 aggcttgcgc caggttgata gcatatttag caatgaggga tgggtcaaat ttgtcaccag
     3901 cacgttctac aacgtttgag aagttttgga tgtgcttgat gatgtcccag ctttctgcat
     3961 cagctagttt gtagtcattt tctgcgcttg gtacaaagtt tgccttgcgt aagatagact
     4021 ggatacgggc gtatgcgtat tgtacataag gccctgtttc gccttcgaag gaaaccatag
     4081 cttctaggtc gaagtcgtag ccgttgtcac ggtcggtttt gaggtcgtag aacttaacgg
     4141 caccgacgcc aactgcgtgc gccacttctt ccttgttttc aaggtcagga tttttagctt
     4201 cgatttgagt aagggcgcgt gaaatggctt cgtccagcgt tggctcgagt aggatgatat
     4261 ttcctttacg agtggagagc tttttcttgt ccttggtaac cagaccgaag gtgacatggg
     4321 tcatatcgtc gctccagtcg aaatccattt ctttcaagac agccttgagt tgtttgaagt
     4381 ggttgatttg ctcctgacca acgacataga tgcttttcac aaagtcgtaa gtgcgtttgc
     4441 gatacatagc tgttgccatg tcacgtgtga tgtaaagtgt tgcaccgtct gttttcatga
     4501 tgagggctgg tggcagattg tagctttcaa ggtcaacgat tctcgcgcct ttagattctt
     4561 gaagaagtcc tttttcttct aagatttgga taccttcgtc catcttatcg ttgtagaagg
     4621 cttcgccatt atagctgtcg aatgttacgc cgagtttgtc gtagatgcgg ttgaattcga
     4681 ccaagctttc atcacggaac cattgccata gctcgtgtgc ttctggatcg ccatcttcca
     4741 attttttgaa ccattgacgt gcttcttcgt ccaactcagg cttctcttcc gcttcagcgt
     4801 tgatacgcac atagagtttg aggagttctg aaattgggtc tgcttcgacc gcagccttgt
     4861 caccccagag tttgtaggca acaatcaaca taccaaattg tttgccccag tcacccaagt
     4921 ggttgatacg gatagggttg tagcctagtt tttcgtggat gttggcaagg gcatcaccga
     4981 taacagttga gcgcaaatgt ccaactgaga atggtttagc aatgtttggg ctagacatgt
     5041 cgatggttac attgcgtcct tgaccaatgt tgagtttacc gtattggtct ttttcagtaa
     5101 taacatctgt caagacttgg tgggagattg cagccttgtc caagaagaag ttgacataag
     5161 gacccgttgc aacaactttt tcaaagccag ttggatccaa tttttcaacg atatccgctg
     5221 cgatagcctg tggagccttg cgttccactt tagcaagtga gaaggctggg aaggcaatat
     5281 cgcccatttc tgatgatttt ggtttttcta gcagattgta gatagcttcc acttccaaac
     5341 tcggaaggat ggcagccaat ctttctgcaa tcacttgttt ttgattcata taggatttcc
     5401 tccaaagtta ttgattctat tttaacacat ttctaggcta atagcgggga aaagtgttat
     5461 aatatttcta taaatataca ttttgaggta aaatgatgaa taaagcagga cgacatgatt
     5521 taataaagtc catgattcgt caagaaaaaa taggacgaca aacggatatt cagcaaggtt
     5581 tagaggctcg aggggtagtg gtaacccaga caaccttgtc tcgtgattta cgtgagttgg
     5641 gagtgataaa aattcatgag aatgggcaat cattttattc cttagctatc gaagaagagc
     5701 gcgtgaattt tatccaatta ttggcacaat atgcgtataa agtagatagg gctagtttta
     5761 ttctggtcct tcattcagaa ctgggagaag cggccttgat ggccaatatc attgatgcag
     5821 aaaagccaga gactattttg ggaacgctgg cgggagctaa tacactttta gttatttgtc
     5881 gagatgaggt tgcggcccag caagttgaag cggagattaa ctactatttg aattagaaca
     5941 gggagagatg atggcaacag aaaaaatttc tccgggaatg cagcagtatc tggatataaa
     6001 agcaaactat ccagatgctt ttttgctttt ccgtatggga gacttttatg aattatttta
     6061 tgaagatgcg gtagaagcgg cacagatttt ggaattgtcc ttgaccagtc gtaataagaa
     6121 tgcggaaaat cccattccta tggcaggcgt tccctatcac gcagcacaac agtatattga
     6181 tactctggta gagttggggc acaaggtcgc aattgccgag cagatggaag atcctaagca
     6241 ggcagtcggc gtggtcaagc gagaagtagt gcaggtcatt actcctggta ccgtaacaga
     6301 ctcgtccaaa atgggagccg acagtaacta tttggttgcg attgaccgtc agggagtgca
     6361 gttcgcactt tcttatatgg atgtgtcaac aggtcagttt tttgtgacta gtttggatga
     6421 ttttactagt ctttgcggtg aaatccgcaa tttacgggca cgtgaattgg tcatcggcta
     6481 tgctttatct gaggaagaag agcaggtctt ttcgaaccag atgaacctcc tgctctcttt
     6541 tgaggatgag gtgacagagg atgtccaatt gattgataac tacttgacag atttggaaaa
     6601 ggctgcggcg ggcaaactcc tcagctacct acatcggact cagatgcgag atctgagcca
     6661 cttgcaaaag gtggtccact atgaaatcaa ggactatctg caaatggact atgcaaccaa
     6721 gtccagtctg gatctgcttg aaaacggtcg gacaggcaag aagcatggta gtttgtactg
     6781 gttgttggat gaaaccaaga cagccatggg tatgcgacta ttgcggacat ggattgatcg
     6841 tcccttgatt gatcttaagc ggattgagaa tcgtcaggct gtagttcagg tttttctgga
     6901 ttacttcttt gaacggagtg acttggtcga ggctttaaaa ggtgtctatg acatcgaacg
     6961 tttggccagc cgagtgtctt ttggaaaaac catgcccaag gatctcttgc agctctccca
     7021 gactctggga aatatcccag caatcaagaa tatcttgcta caaatcaatg agccttctct
     7081 aggcaatctg gtagctggat tggacccaat cccagaactg catgctctga tcagctctgc
     7141 tattgaccca gaagcccaag ggactatcac agatggaaat atcatccgta cgggctttga
     7201 cgaaacgctg gatcagtacc gtctggtcat gcgtgaggga gcgggttgga ttgcggagat
     7261 tgaggccaag gagcgtgaag cgtctggtat caacaatctc aagattgatt acaacaaaaa
     7321 agatggctac tatttccatg tgaccaattc caatctgggc aatgtgccgg accatttttt
     7381 ccgtaaggcg accttgaaaa actcggagcg ctatggaacg gaagagttgg ctaagatcga
     7441 agggcagatg ttggaggcgc gtgataagtc tgctaatttg gagtacgaga ttttcatgcg
     7501 gattcgccaa gaggttgaga agtatatcgc tcgcttgcag aagttggctc ggaccattgc
     7561 aaccatcgat gttttgcagg cctttgcagt tgtggcggag cagcaacatt tggtttgtcc
     7621 acgcttcaca gatcaaagag aactgaccat tgaccgtggt cgtcatgcgg tggtggagaa
     7681 ggtcatgggc aagcagacct acattcccaa ctctattcac ttgagtaccg atacacatat
     7741 gcaactgatt actggtccaa acatgagtgg taagtctacc tatatgcggc agttggcggt
     7801 tatcgtcatc atggcgcaga tgggttccta tgtgcctgcg gatcaggctg aattaccgat
     7861 tttcgatgct attttcaccc gtatcggggc ggcagacgac ttggtcagcg gtcaatcgac
     7921 cttcatggtg gagatgatgg aggccaataa ggcagtccgt ctggcgacag atcggtcgct
     7981 catcctcttt gatgaacttg gacggggaac ggccacctat gacggtatgg ccctggccca
     8041 gtctatcatc gagtacatcc atgacaagat tggtgccaag actctctttg ccacccacta
     8101 ccatgagttg acagacctta gccagacctt ggaacactta gagaatgtcc atgtatcgac
     8161 cttggagaag gacggccaag tcaccttcct ccacaagatt gctcaaggcc cagccgacaa
     8221 gtcctacggg attcatgtgg ctaagattgc gggaatgcca gaggagctat tgcagcgggc
     8281 ggataggatt ttgcagacgc ttgaaaacca agcccctact gcaccagcaa aatcagctcc
     8341 atcagtggtg gcagaaccgt ctggtcaaat cgacctcttc gcagacaccc cttctcaccc
     8401 agtccttgat gaactggaaa aactagacat ctacaatatg actcctatgg aagtcatgat
     8461 ggcagtggcg gagttgaaga aaaaaatata agacaatgaa agtcaggaca gggttctggc
     8521 tttttttgca acaaaaaatc ctgcttccat ggagaaaagc aggggatata ttagtccaaa
     8581 tagttctgta aactctcgat gagttcctga ttgtacttga cgtacgattg ttttttttct
     8641 atagtcaggc catcgagttg gcgaaagcag gaaagtagct tatcttcgag aatggcttgg
     8701 agtttttgac catcttcggt gagctggata aggagttgtc gtttgtctcc cagaggaatg
     8761 cttcgctgga tgtagccctt tgcctcgagt cgcttgagaa gtggcgtcaa ggtgttgctg
     8821 gccaaatcta gcttttcacc gagttccttg agtgtcagtg gagctttttc ccagaggaca
     8881 acaagcacga ggtactgggt ataggtcaag tcaaattcct tgagattttt cagataaaat
     8941 tgattgaata gtttgttgac ttggtagaag gaatagcaga gctgctttga ataatgatag
     9001 tcggacatgg gttctcgctt tctaatcgtg cacgataaaa atatcttatc aaaattcttt
     9061 taccttgaca aatcaaatga atagggatag actagacaca taacaaaaac aatcgcacgc
     9121 gattgaaatt aggaggaagc atgaaaaaag cactgattgt cctaaccaat acagaacaat
     9181 atggtgagca tgaacggttg acaggtttgt ggctcagtga gctgacccat ttttatgatg
     9241 agttagtcaa agcgggctat gacgcggatt ttgtcagccc aaaaggtggt tacgtccccc
     9301 tagacccgca tagtttgacc atgatggatg atgtagaccg cacttactat aaggacgctg
     9361 attttcgcaa tcgtgctctc ggtcagacct tgcgacctga agaggttaag gcgacggact
     9421 atgagttgat ttactataca ggtggtcatg gggtcatgtg ggatttccca gactctgtgg
     9481 aaatagcaga gctagccagt cagatttacc aaaacggagg tctcgtcaca gcagtttgtc
     9541 acggtgtggc agggctattg ccaatcaaag atgagaatgg tcaacccttg attgaaggaa
     9601 aagtcgttac tggctttacc aatcaagaag aggaattaaa cggcaccgca gacttggtac
     9661 catttttaac ggaggcagcc cttcgtgaaa aaggggctaa agttgaaatt ggaacagcct
     9721 tttcccctgt tgttcgccag gatgatcgca tcttgacagg tcaaaatccc caatctgctc
     9781 gtgccctagg ccaaactatt gtttctatgt tgacaaatta aggaggaaga atgatgtatc
     9841 aatacgatgt tacctttatc ggctcaggac atgccaactg gcatgctgca gttgatttgg
     9901 caaaggcagg caagaaagtg gccattgtcg aaaaagatat cacagctggt acctgcacaa
     9961 actatggttg taatgccaag tttttactag aaagtccatt tgaatttatg gatggtctgg
    10021 cacggtatga aaaagcaggg attgcaaaaa caggagaaat ttcttgggaa aaattgatgg
    10081 cgtataaaaa agaggaaatt ccaacctact ctcctatgct agaaggtatg tttgccagcc
    10141 tgtcaattga tctgttaaaa ggacatggtc agttaaaaga tcttcacaca gtgatggttg
    10201 atgataagga aattaccaca gaatttgtcg tgattggcac aggtcaacgc cctgctagac
    10261 taaatgtccc tgggaatgaa tggtttcaag acagccgtgc ctttcttgat atggaccata
    10321 tgccagaaag aattgtcttt atcggtgctg ggattatctc gctagaattt gcgacaatgg
    10381 cttctctact gggctcagaa gttcacatca tcgagtttgc agatcgtgct ttagcagcct
    10441 atcctgagca aatggtagct agtgtggttg ataaaatgac agccgatggt gttagcttcc
    10501 atttcaatca agcggttgtt tcagctgaaa aaacagcaag tggtcttctt gtcaaaacgg
    10561 ctcagggctt agaaatcgag acagacacca ttattgatgc cacaggccgt gtctcaaatg
    10621 tagaaggtct aggcttagaa gaggttggag tggattttga tcgcactggc atcaaggtga
    10681 atgaattcat gcagacaagc cagcctacta tctacgcgtc tggtgatgtg gtttctaaaa
    10741 cgattcctcg cttgacaccg actgctagct ttgagtctag ctacattgcg gagcatattt
    10801 tgggcaatcc agctccgatt acctatccag ttattccaaa tgtcgttttc acgctgccac
    10861 gtctggctca agttggtgtt acggttgcag aggctaaggc gaatcctgaa cagtacaaga
    10921 ttgtagacat tccctttggt caacaattaa aattccaaac taagttggag acagaagctc
    10981 actttacgct gattgtagga agtgacaaga ccttgaaggg tgcggccttg attgggcatg
    11041 aagcaggaga gatgattaat ttgctgacct tgattatcaa tcaacagttg acagcaacag
    11101 atctaaatcg catgattttt gctttccctg caacaaccta tgctctactt tcccatgtaa
    11161 aaacagcgct aatgtaagga agataatcgt gtatggtaac taatgatttt aatgagatta
    11221 tgtttggtcg caaatctatc aaagtatatg atgagactgt gacgattgac cacgaagaaa
    11281 tgcttgaaat gctgaacaaa gccattacag ctccatcttc tgtgaacttg cagccttggc
    11341 gttttgtggt tgtggaaagc gcagctgcta aggccaagtt gcgtcccatg gtacgcttta
    11401 ataccaaaca agtcgacact gcttcagcgg taattttaat ctttgcagat atcaagcccc
    11461 aggaccgcac agaagttatc tatgaccgag ctgtagccga aggaaagatg ccccaagaag
    11521 tacgagatta tcaagtacct gtgattaaga gcatgtatga tgccttatca ccagctacga
    11581 tgagagaagt cgtcaaaatg gatgctagct tagccgccat gcagttgatg ttagtagcac
    11641 gttcacatgg ctatgatacc aacccgatgt ccggttttga ccctgaggag atggtggcaa
    11701 cttttgacct agatccagac cgttatattc cggtcttgat agtctcaatt ggcaaagcca
    11761 aagaaccagg tttcgactct gtgcgtattg aggcagaaaa aattacagat tttaaataag
    11821 tctagtggca aaatgccaag agaaagtaag taaggaaaaa gatgagagta cataatctac
    11881 aaaaatgggg agccattggc tttctaataa atgccagtat ttacctaggg accgaattaa
    11941 tcgctgccat tggaacgggc tatccgctta gttatgtcta tggtcggcag tttatttcag
    12001 ctcttggggt atacaatggt cagcaggtag ctggtgtgcc agaaaacttt tcaaattggg
    12061 cgattgtcat gaatagtggc tttattctaa ctgcgattgg ctttgtcttt tcttatgctc
    12121 tgcttatttt ctctaagata aggcgaagac atccaatttt ggcaatcctt atcctgctta
    12181 tagtcaccct ctttggccta gggagtctct tggttggttt cttccaaggt ggtgtacctg
    12241 gtcaggatgg cttgcatgga tttggggcac gtctgtcctt tatgatgggc aatagcacct
    12301 tgcttttgac aggtcttttc ctgcccgatc aaaaaatggt ttatcgctct attagtattt
    12361 ttctcggatt gtgtggtttt gtcgctgcag gattgttgca gacggcaatc gcagaaaatc
    12421 aagtggcggt aatggccatt tatgaacgct taaccgtcta tcctatcaca gcttggcaga
    12481 tagtgacggg gctaacattt ctaaagaatg actaagtcag gacaaatgtt ctggcttttt
    12541 agccgtttag tgctggaaaa cgaccacata gccaaaagtc cttgaaacca ctcgagaaat
    12601 ggtgtttaat agggtcagaa agagaaagga gagaagatga aagtaaaact agctatttca
    12661 ccaaaaattg tagaagactt agtaactatt gaagctcaag ctatgtctga gcaggttact
    12721 catctggtat cctatattca aaacttggat aagcagagat ccagtctaac tgtcaaaaaa
    12781 ggggaacagg tttatcttgt ggaacatgat gagattgtca gactctactt ggaagatagg
    12841 gttttacagg tggaaacagt agaaactacc tatacttcca acctacgctt gtatcaggtt
    12901 aaggaggact tgccggcaaa ctttttacaa atctctcagt cggaaatcat ttacatcaag
    12961 caactggacc acctcaagct gaccgccaac ggtctggtca aactggtcat gaaaaacggc
    13021 tctgtcacct actcatcccg tcgctatcta aaagttatca aagaaaggtt aggactatga
    13081 aaaaatacat tttatcagcc agtttaggca tcgctatcgg aaccattatc tccattatca
    13141 catcagccgt cttcggacaa ggagcttatc ttccgctcaa tcccttttca accatggggg
    13201 cttactacct gagcaacttt agtcaagtaa ccgttatgct gatttgtgta gccatttggg
    13261 cggcaatcgg tctcttgttc cagctggcag acacgatttt tgaacaggac tggagccttc
    13321 tacgaatgat agcaacgcat ttttgtatca cagctttagg cttcacaccg ctgggcattt
    13381 tggctggttg gtttcccgtg aaacttggga ctcttatctt cttttggttc ctctttatct
    13441 tggtctacgc tctgctattt ttcctaaacc atcggaaaat ggagcggcaa atcaaggaca
    13501 tcaatggtcg tttgtagtat aatagcacta tcattttgtt ggagtgtttt atgaaaatta
    13561 ttttgacgat tgtctatagc ttgggagtgg tgtggaatat cctctttctt gcggtgaatg
    13621 ttggcagaat tcctgtcatc aacttgcttt ggcctgctgt gattttagtg gcctgtgcca
    13681 tcaatttgta cttcttatgg accagaaaac aagagtcaga ataggctctt gttttcattt
    13741 gtttttcaga aacgaagtct atatttagtg tgaattttct atttttatat tttttggcac
    13801 aagatattga tttttatttt gtgaaatgtt acactaatag cagtgaaaaa tggaggccag
    13861 tcagatgaat gtgcaagaaa atgtcttacc gagtatagaa ttattggttt tgaaacgtga
    13921 tggacggaca gtatcctttg accaggataa gattttttct gctcttcggc gggcaaacca
    13981 agaattagaa catcctgttt cagaggcagg tttaaaaatt gtattagaag ctgttttggc
    14041 tgaaattggt cgccgatttg agaaagatgt tcaaatttac gaaattcaaa cggtcgttga
    14101 acaggaattg ttaaaggctc atttgtatga tttggcggag ctttatattc aataccgaac
    14161 acgccgtgat tttcgccgtc atcaggctac cgatattaat tttgaaattc ataagctgtt
    14221 gagcaaggac cagtctgtgg tcaatgaaaa tgccaataag gacgcggatg tgttcaatac
    14281 tcaacgggac ctgacagcag gtattgttgg caagtctatc ggtctcaaat tattgccagc
    14341 tcatgtggcc aatgcccatc aaaaggggga catccattat cacgacttgg attacagccc
    14401 ttatacacca atgactaact gttgtttgat tgattttaaa ggaatgttgg cgcaaggctt
    14461 caagatagga aatgcggatg tagaaagtcc aaaatcaatt caaactgcta cggctcagat
    14521 ttcacaaatc attgccaatg tggcctctag tcaatatggt ggttgctcag ctgaccgtat
    14581 cgatgaagtt ttggcgccct atgcggagtt caactaccaa aagcatttga aagttgccaa
    14641 ggattgggtg ttagcagaca agcaagaaga atatgcgcgt gctaaaacgc aaaaagacat
    14701 ctatgatgct atgcagtctt tggagtatga aatcaacacc ctttttactt ccaatggaca
    14761 aacacccttt acctcactcg gttttggcct agggacatca tggtttgagc gagaaattca
    14821 aaaagcgatt ttgaacattc gtatcaaggg tctggggcgc gaaggacgga cagctatttt
    14881 tccgaagctg atttttacag ttaagcgtgg cttgaacttg gagccagatt ctccaaacta
    14941 tgacatcaag caattggcga ttgaatgtgc aacaaagcgt atgtatccag atatgctgtc
    15001 ttatgacaag attgttgagt tgacaggttc tttcaaggtg ccaatgggct gccgttcttt
    15061 cctccaaggt tggaaggatg aaaatgggca ggatgtgaca tctggtcgga tgaacttggg
    15121 tgtcgtaacc gtcaatttgc cacggattgc catggagtct gctggagata aggataagtt
    15181 ctgggaaatc tttgcagaac gtatggccat tgccaaggat gccctggtct accgcgtgga
    15241 gcgggtcaag gaggcaaccc cggccaatgc tccaattctc tatcagtatg gggcattcgg
    15301 caaacgcttg gctaagacag acgcagtaga tgaagtcttt aaaaatcgtc gagcaaccgt
    15361 atctttgggg tacattggtt tgtatgaagt cgcaacagta ttttacggtg gcgaatggga
    15421 gaccaaccca gaggcaaaag atttcacggt ggatattatc aagaaaatga aagccttggt
    15481 tgaagattgg tcggatgaat atggttatca tttctcagtt tattcgacac catctgaaag
    15541 cctgacagac cgcttctgcc gtatggatac agagaaattt ggcatcgtta aggacattac
    15601 ggataaagaa tattacacta acagtttcca ctatgatgta cgcaaaaatc caacaccatt
    15661 tgaaaaactg gactttgaga aaatctatcc tgctgtaggt gctagcggtg gctttatcca
    15721 ctactgtgaa taccctgtac tgcaacaaaa tccaaaggcc ttggaagctg tttgggacta
    15781 tgcttatgac cgtgttggtt acttgggaac caatactccg attgaccatt gttacgcttg
    15841 tgattttgaa ggtgattttg agccgacgga gcgtggcttc aagtgtccaa attgcgggaa
    15901 tagcgatcct aagtcggtgg atgttgttaa acgaacttgt ggttatctag gcaatccaca
    15961 ggcccgtccg atggtaaaag gccgtcacaa ggaaatttcg gcgcgtgtga aacacatgaa
    16021 tgggtcgagc ttataagaat aaacagacta tgtagagctt ccacagttcc agttagctgt
    16081 ggaagtttat tataaacaaa taagagataa aaaaagagga gaaaacaatg ggaaaatatc
    16141 aattagacga taaggggaag gccctggtga cacgctatca tgagaagaat tctaatgtga
    16201 agcaggataa aaaagcgcgt gtgcaggaat tgctcaaaca agcaaaaaac aagaaaaaat
    16261 agtatggact atacagatat tagtattctc cataccaatg atatgcattc ctacatggag
    16321 aattttccaa agaaggcgca actgattgcg aacattcggg atggtaatga gaaaaagggg
    16381 gttccgacct acagacaggt ctccaccctc agatgtgggg cattgttcca gatggtgagg
    16441 gttttgtggt caatggcaga gctgtcgagt cagataagga ctatcagatt gtgaccaatt
    16501 cttttgtctg gagcggtaag gacaactatg atgatttcca caaggcagaa attgtgcagg
    16561 acttgggact ggatacggac attatcagtg aatttttcaa gagacaatat ggagactaga
    16621 atggaactaa gaagaccaac tgtggcagat aaggaaacga ttttggagat gctggcagaa
    16681 tttgaaaaag caggctcagc tatggacgga ggatttatct ccaaagatgt ggactttgaa
    16741 gactggattt tgagaaacca agactatgag gcaggcatca acctgccaga aggttttgtt
    16801 ccctctattc agtatgtatc atttgaccag acaggtcgag cccttggttt tctcagtcta
    16861 cgcctacggc tcaacgattt cctgctcaat aaaggcggtc acatcggata ttccattcgc
    16921 ccgacggagc gtggcaaggg ctatgccaag gatcagttgc gacttggttt gcaggaagcc
    16981 gcaaccaaaa atatttccaa agtcctcgtg acttgctcga cagacaatga agctagtcgc
    17041 aaaacgattg tggcttgtgg tggcgttttg gaagatattc gagatggaat agaaagatac
    17101 tggattgaat aagagaggag gtagctatgc gagagcagac ttggaacaat cccaagccag
    17161 gtgagtggaa gagtgaagaa ctcagtcagg gacggattat ggactacaag gcctttaact
    17221 ttgtggacgg cgaaggcgtg cgctgttccc tctatgtcag cggctgcctc tttcactgtc
    17281 caggctgcta caacgtcgcc acctggtcct ttaaggccgg cattccctac accaaggagc
    17341 tggaagaccg cattttagca gacttgggcc agccctatgt gcaggggctg accctcttgg
    17401 gtggggagcc ttttctcaat acaggcaccg tcctccccct cgtcaagcga gttcggacgg
    17461 aattgccaga caaggatatt tggtcttgga caggctatac atgggaagaa ttgatgttgg
    17521 aaacgccaga caaactagag ttgctcagcc agttggacat tctcgtagat ggtcgctatg
    17581 acaaaaacaa acgcaacctc atgttgcaat ttagaggatc gaccaaccaa cgcatcattg
    17641 atgtgcagaa atcattgcag gaaaaacgag ttgtcctgtg ggataagtta aaaaaatagc
    17701 ccttcacaat gtgaaagggt tctttttgac aaattcactc aaaaaacgag aaaaagcctt
    17761 gataaatcaa gactttcctc atatcaacca atatcctccc tgtagggatc gaacctacga
    17821 cccacggatt aagagtccgc tgctctgcca gctgagctaa ggaaggtaaa aaataaaaat
    17881 gctgtattgg taccggttat tcaaagattg tattgatccc gcacgctaga agcaggtggg
    17941 tgacgtgttt ctgacttagt tgcttctggg tgtaccagcc tgcatactgc caaaagatct
    18001 ttgtctccct agtaatacaa aaatagtcgg tcaacacata ggtatgaatt cgtataccac
    18061 agcagttctt atttctgatt taatattacc atattttaaa aaaaaaatca agagaaaatc
    18121 ggcaaaaaca tgaaaacgtt atcaaatttt atttttctga agaaaagcac tacaatttat
    18181 gatacaggac gatattgtgt tcagttcatt tattacctat atttctccca ttccttattg
    18241 ataagcgttg taaaatcagg aagtccctgt gtttctctta ctcacctatt tggtaaagca
    18301 tttttcctga atagaaaata ttcattagac aggttacagg agtagcacca gtccataacc
    18361 acccctgaaa tacagctcgt ctccagttgt aggtttccac aattacttca aattcactat
    18421 cttggtactt tttctggtat tcttccagtc caatacaagt tcctgaaaaa tcccctgtaa
    18481 cagtatcttc gaatacgaaa aactcgacat cctctttatc aacctgttca aacaggatgg
    18541 ttgctttatg aatctgttca gtttgattat cagtataata aaacagagaa tccatatgca
    18601 gtatcagctg attatccagg tgttcaatct tcgtaattct tgcatcatgc aacgaatacg
    18661 gaaagacctc gccaaaattt cgttctattt tcattggaat acctcatttt aagaagtttg
    18721 atggtctttg gctcataatc aatagaaact agtcctacat tacacatttt tcttatgctg
    18781 ttttagctgc ttaatttttt cttgggtcat gcccaaggca cgctcgtatt ttccggtgtt
    18841 gttggcggtg aagtaatccg cagtcagtaa cttgtcgggc aggtattgct ggtccaccca
    18901 tttttcagga taggcatggg gatactggta gccaatagca tttcccagct ccttactacc
    18961 agcataatgg ccgtcccgca ggtgatttgg aataggcaga tgaccatttt tccgcaaatc
    19021 agctagagct gcatcgatag ccagataggc agaattggac ttgggagaaa gagccaaatc
    19081 aacgaccacg ttggcaatca aaatccgtgc ctctggaaag ccgattttct gagccgcttc
    19141 aagggccgtc accgtatgaa tctgagcctc tggattggcc aagccgatgt cttcgtaggc
    19201 aatgaccgtc aagcgacggg ccagactagg cagatcttcg gcctcaatca aacgagcggc
    19261 gtagtggagg ctggcattga catcactacc ccgaatggat ttttgcaggg ctgagagaat
    19321 gtcgtagtgg gcatcgccgt tcttgtccat gctgatgtag gacttttgca agctattttc
    19381 cacggcatcc agatcaatgt ggcgactacc atcgtcactt tccttggtag acagtacagc
    19441 caattctagc gaattgtagg cagcacgaag gtcgccattg gtcgcatttg ccagaaaatc
    19501 cagagcctca ggctcaatgg tgacaggaaa atcaaaaccg cgttcgctgt ctgtcagagc
    19561 caactccaag gcttgtcgga tgtggctggt tttcaagggt tgtaattcaa aaatctgcac
    19621 tcgactacga atggcgggta gaattgagaa gaatggattt tccgtcgttg ctccaatcat
    19681 gatgatattg ccattttcca aaagagggag caggaagtcc tgcttggtct tgttaaggcg
    19741 gtggatttca tcgagcagga gaaccagacc gccagaaaac ttagcctctt cagcgatttc
    19801 ttgcaggcgt ttttggttgt cggtcgtggc attaaaggtc cgaaaggcat acttggtcgt
    19861 gccagcaatg gcggatgcaa tcgaggtctt accaatccct ggcggaccgt agagaatcat
    19921 ggacgacagc atattggcat caatcatgcg acggataatc tttccaggac cgaccaggtg
    19981 ttcctgaccg atgacctcat caatggattt gggtcgcata cgaagggcga gattggctgg
    20041 cataggcttc ctttcagtac atttatggta taatcattat actacaattt taggatttgg
    20101 agaaaaacga agatgacgga gttgacggtg agtgttttgg aagaatactt gcgtgaccac
    20161 tatgggacga cagttccaga gcaaagtctc tttatgaaat tagtggagga aattggtgaa
    20221 gtggcagagc tactgaatca acgtgcaggc cgcaagatga tggatggcga agacgacagc
    20281 tctgctcgtc tggcagaaga attagctgac gttattcact atgctgtagc cttggcagcg
    20341 gtgaatcaac tagatttaac caagtccatt ttggagaaag acaagcgggc ttccgtcaaa
    20401 tacggtcgag aaataaattt attggaattt atagaaaaga ggaaatagaa tggcgaaaca
    20461 tggcttttta gatgtgctgg aagcggcact ggataaacat tttacctacg attatgaact
    20521 taactgggac aagaaaaacc acgcagttga gctagctttt atcttggaag cacagaacgc
    20581 ggctgggatt gaaacggtgg acgacgaagg caacgcctct gcagaggata ttttcctaga
    20641 ggagtatgtc cttttctaca accaggacaa gtcccgcttt gacgaggaag actacctggt
    20701 cgctctgcca tttgacgcca agaagggctt ttcagcagag tttctgacct acttcgcagg
    20761 ttttctcaag gacaccgccg accaaggttt tgatgacctc atggactttt tggcggaccc
    20821 agaagcccaa gaatttgcga ttgcttggga tagcgaggct tttgaaaaag gcagagcaga
    20881 cttggtggaa ggggaatttt acccatatcc gaggtattga gatggttcat gaaatgttac
    20941 tggctccaaa accttttgaa atgatgaagt ctggtcagaa gaccattgag ctacgacttt
    21001 atgatgagaa gcgaaagtat atacgcattg gagattttat ccgtttttat tgtacagaaa
    21061 atcagacgca aacgatcgac gtggaagtat tagatcttca catatttgat aattttgctc
    21121 agttatacaa agaactggat ttattgtctt gtgggtatac gcaaagcagt atcagagagg
    21181 cgaaaccaga agatatggaa gtttactatt cgcgagaaca attagaacaa tatggtgcag
    21241 tgggtataga attgagggta atagattcta tctgacattc cgttttcttt cttgcttgac
    21301 tgcgcgtgaa acttttgcta ttataaaaat agaaaaggcg ttgagttcca gctcaacgcc
    21361 ctgacaggac cataacgatg gttcagcttt tggacaaaat agaccgccag cttgaaatca
    21421 tgggcggtct attttttatc tagcatggtt acgatgattg taatgatcaa accaagcata
    21481 tttacaagta agcttgcaaa agctatgatg accattagtt catctgctga caaattaggt
    21541 tctcctttcc gttggatttt gtgtctattt gcataggcac caccaccttt cagaaatcag
    21601 aaccaccgct cagattttcc tgtcgttcca tttgttcgaa aattattttg attttactta
    21661 ccttataaca ttagcttgta aaataggcta gaaatcggta caataataca gtgattgacg
    21721 catagaaaag aaaaggaaaa caaacatgaa ctcatggcaa gaattaacga ttcacgtgca
    21781 tcgtgatgca gaagaagcag tttcaaacct catgattgaa acgggcagtc agggggtggc
    21841 gattagcgac tcggctgact atgtgggaca ggaggaccgt ttcggtgaac tctatcccga
    21901 ggtggagcag tctgacatga ttgcgattac ggcctactat cctgatactg tgaatattga
    21961 ggaagttaag gcagacttgg cggctcgctt ggcggatttg acaggctttg gcttggaaac
    22021 gggtcaggtc agcctagaaa gtcaggaact ggcagaggaa gactgggcgg acaactggaa
    22081 gaaatactat gagccagccc gcattaccca cgatttgacc attgtgccgt cttggacgga
    22141 ctacgaggtg acggctggtg agaaaattat ccgcttggat ccaggcatgg ctttcggtac
    22201 aggaacccat ccgaccacta agatgagcct ctttgctctt tctcaggtcc tgcgtggtgg
    22261 cgaaacggtc atcgacgtcg gcacaggctc aggcgttctc tctattgcca gctccctctt
    22321 gggcgccaag gagatttacg cttatgactt ggatgaagtg gcggtgcgtg tagctcagga
    22381 aaatattgac cttaacgcca atactagcaa tattcatgtc gcagcgggcg atttgcttcg
    22441 tggcgttgac attaaagcag aagtcatcgt tgccaacatc ttggcggaca ttctcatcca
    22501 tctgaccgag gatgcttacc gtctggtcaa ggaggagggc tacctaatta tgagcggcat
    22561 catcgcggac aagtgggaca tggtgcgagc atctgcggag gcggctggct tcttccttga
    22621 gacccacatg attcagggcg agtggaattg ctgcatcttt aagaagacga ctgaccgctc
    22681 aggtgtgatt ggaggctagg atgcagcagt attttgtcaa tggcagagca ccgcagggcg
    22741 ttttccagat tagcgataag gacaccgcca agcacatgtt ttctgtcatg cgattgcagg
    22801 cagatgaaca gattgtccta gtctttgacg acgggattaa acgcttggcg cgcgtggtag
    22861 atagccagaa ccaatctgtt gaaatcatcg aagaattggc agacaatgtc gaattacctg
    22921 tctccgttac tattgccatg ggctttccta agggagataa gctcgaattt gtcgctcaaa
    22981 aggcaacgga gttaggtatg acagccctct gggcctttcc agctgactgg tctgtggtca
    23041 aatgggacgg caaaaaactg gcaaaaaaag cagaaaagtt agaaaaaatc gcccaaggag
    23101 cagccgagca aagtaaacgc aatcggatcc ctgcagttcg cttgtttgag aaaaaagcgg
    23161 atttcctagc tcagttggca ggctttgatc agattatctt agcctacgaa gaagctgcca
    23221 aggagggcga acaagccaat ctagtgaaaa tcttgtctag cttagaaacc gggcaatctg
    23281 ttctggtcat cgtcggtcca gaaggcggcg tgtcgcctga ggaagtagct gctttcgaag
    23341 gagcaggagc tgtcaagaca ggcctaggtc ctcgcattct ccgagcagaa acggctcacc
    23401 tctacgccct ttctgccatt agctacgcga cggaattgtt gaggtaaccc atgtttgcct
    23461 taggtacgat tatcaataca ctggctgttg cggttggtgg gctcttgggt acttggtttg
    23521 gtcatttgct gaaagaacgc catcagtctg gactaacgct agctagcggt gttgccattc
    23581 tctttttagg gatttcagga acgctgacag gccttttaag agtagaaact ggtcaactgg
    23641 tcacccagaa caccatgcta tttgtgctga gtctagcctt tggaaccttg attggggaag
    23701 tactgcatat cgaaggttgg tttgagcgct tgggtatctg gctccgagaa aagtcgggca
    23761 atagtcaaga ctctcagttt ttggatgctt ttctaactgc ctccctgacc gtctgtatcg
    23821 gtgccatggc catactagga gccatccaag atggattgac gggtgattat cgcttgttgg
    23881 ccgttaagag tgtcctggac tttatcatca tctttatcat gacggccagt ttgggcaagg
    23941 gagcaggctt ttcagcagta cccgtttttc tctttcaagg ctctgtgact cttttggccc
    24001 gcctgattga acctttgatg acggatcagg cccttgccaa tctctccttt atcggctcgg
    24061 tacttatttt ctgtgtcggt gtcaatatca tctgggacaa aaagattcgc gtggccaata
    24121 tgctacctgc tattcttatc gcggttattt ggtcattttt tacatagaaa gaaaagggct
    24181 cggttgctta tccgagctct ttactattta acattagttt tcatttttct tgcggaaagc
    24241 accgacaagg cccatcaaac tgatgccaat caggctaagc atagaacttg cctcaccagt
    24301 tgcagggagt gttttttgtc ctgcttgagt tgttgcggag gaagtgcttg tcttagctgt
    24361 agtagcaagt ttgtgttttg gtgcaggtgc tgttgttttt tcggctggaa gggtaatgac
    24421 ctgaccagac ggaagtgtaa tttgaacacc agattgacca gatgaagttt gattatcagt
    24481 agctgtttgt ccagttggag gagtcacgac ttttggttca gtgtagacaa acttgaactc
    24541 gccaaagcct tcgttttcag ctgaggcttg gaggtaaacc agaccttctt gatccgctag
    24601 caagtctttt gcacggtctg ccgtcaagaa gcggaggtct agacctttga tgctatcggt
    24661 gaaggtccag ttattgtctg cagttgggtt gatgaccttt tcagagatga tgtagttgat
    24721 gatggcttgg cggttttcca ggttgagcaa gtaattgaca gaagcttcgc ggaccccagg
    24781 gaaagtaccg tttgcacggt agttgttggt aaccacgatg aattcttgat cagctgtcac
    24841 atcttgccca ttgtattgca gattccgaac tctgctggca gtttcgttga ctaccttacc
    24901 gttacgatcg tatttatttg gttgcgtaat atcgtactga taagttactc cgtcaataac
    24961 gtcaaaattg taagtgcgga aatctgtgtt gactaggttt tgtggctctg ttgagcttgg
    25021 gtcaacttgg ttgaattgcc ctgcggacat ttccaaccat tctttgagtt gagcaccgtt
    25081 gatttttaag atggctacaa cgttgtcgta gaggtaaagg tctgctacgt tcttgatggc
    25141 gattgggcca gcaggaatgt ctgtataggc tgaagcatcg cctcgagtac cagccttaaa
    25201 tggtgcagcc gcagatagga ttggtagatt agcttctgaa gtacccgcca actgttgttt
    25261 tgcataccaa atctgtgcat tgttaacaat ctgtacagaa ggatcatctt gaacaagggc
    25321 aaagaagctg ttgattggag cagttgtttc accgacttgt tggcgcacat agttgatggt
    25381 ttcgttatgg gcttctttag caaggtcgat gatgcgacca tctgctacag atgattttgt
    25441 atcgatttta cgaatagccg ctttgctaga agtagttgtc catttgccat ctttaaagac
    25501 cagattgagg tcgatgacgc cgaggtgatc accgtattta cccgccatgg tgacaggagt
    25561 accgttgatt ttgccatttg tatcatccac gccagagtat ttagcataga agcttggttt
    25621 ttcggcagtt cctgggaatt ctgcgtggga gtgacctgtg ataaccgcat caactcctga
    25681 caggctggcg atttggtaac cgacattttc ctcgccgact tcatattggt catcgccgat
    25741 acctgagtgg gaaaggacca gaacgatgtc tgcgccattt tctcgcatgg ttgggataat
    25801 atcgcgaacg gcttcaactg catcacgaac aatcactttt ccttctagat aagctttgtc
    25861 ccagttgaga atttgagggg gaacaatccc cgtaacaccg acatttagtg taaccttttt
    25921 accctcggtg tctgtgaatg tctttttcac aatggtataa ggggtgtaga gaaagtcttt
    25981 cgtagtcgga tcgaggacat tggcattgac tagaggcatg ttggctgtac gaattacttt
    26041 ttcgaggtag gcaaggccgt agttaaattc gtggttgcca agtgtgccga catcaaatcc
    26101 cagagtctct aaggcggcgt acataggatg ttgttcatct tcttcaatag gatcaacgat
    26161 agacttgtaa tttccaagag gagtaccttg aatggtgtct ccattatcta ccaatacgac
    26221 atttggattt tctttttttg cttcttcgat aagaacagct gtttttgcta gacccagtgt
    26281 ctctacaggt ttatcctggt aatagtcata gttgaccaag ttcgtatgga ggtcagttgt
    26341 tgcgagaatg cgaacatcaa cagtttgtcc ttcaacaggc tgactagttt cagttgcagc
    26401 aggagtgacc gtgcgtgctt ctgaagcagt tgagtcagtt gtctcgcttg taggatcact
    26461 agtttcagct gtctcggaag agcttggatt ttcagcttcg gtagtggctg gaacaggaga
    26521 ttctgtatta tcagcttcct ctgtggtgtc agattcaact ggtacagcct gacttgcttc
    26581 tgttgaagaa gctggagttg tgttgagaat ctcttcggct tgagctaatt ttggattgct
    26641 tgcagctaag agagctagtg tgagcgctac ggcacactta ctgaaacgaa aattcataag
    26701 aatcctccat tttctttttg taataatctt ctgcaatcat tatacagcta aggaatgcaa
    26761 aaatcaaggc taattctgaa cgtttggttg aaaaacaagt gaaaatagta agaaaaacaa
    26821 tgaaaaaagg aacattcgct gaatctgaac ttggtttgga ttgtttgtaa ttagtagtct
    26881 tatgttgtta gattcctttt tcttttctag tgaaaatggt aaaataatag gaaatagtta
    26941 gggagagaag taaatgaaag aaatcaatta cactggcgag gaagttgttg cactgacagc
    27001 aagctatctt ccagctgatg atgtggcctt tgttgagaaa gctttgaact atgctactga
    27061 agctcataaa cttcaatttc gtaaatcagg tgaaccctac attgtccacc ctatccaagt
    27121 ggcagggatt ttggcagggc tcaagctaga tgcggtaacc gtagcttgcg gattcttgca
    27181 tgacgtagta gaagacactg aggtaactct ggatgatatg gaagcagaat ttggcccgga
    27241 ggttcgccat attgtcggtg gtgtaaccaa gttgggtaag gtcgagtaca agtctcatga
    27301 ggagcagctg gctgaaaacc accgcaacat gctgattgcc atgtcccaag atatgcgggt
    27361 gattctggtt aaactggcag accgccttca caacatgcgg acccttaaac acttgcgcaa
    27421 ggacaagcag gaacggattt cacgtgaaac aatggaaatc tatgctcccc ttgcccaccg
    27481 tctaggaatt tcttctatca agtgggaatt ggaagacatg tccttccgct acctcaatga
    27541 agttgagttt tacaagatta cccacatgat gagggagaaa cgacgcgaac gggaagagtt
    27601 ggttaatgaa gttgtcgaca agttaagaga atacacagag gagcgccatc ttcacggtca
    27661 aatctatggt cgtcccaagc atatctactc catctatcgg aagatgcatg acaagaaaaa
    27721 gcgttttgac gaactatatg atctgacagc tattcgctgc ttgatggata ctccaagcga
    27781 tgtctatgct atgcttggct acatccatga actctggaaa cctatgccag gtcggttcaa
    27841 ggactacatt gccagtccaa aggccaatgg ctaccagtcc atccatacga cagtctatgg
    27901 accaaaggga ccgattgagt tccaaattcg gacggtggaa atgcaccagg ttgcagaata
    27961 cggggttgca gctcactggg cctacaagcg tggtggcaag gcaactgcta gtgaaaaaga
    28021 gttgcgctgg attaacaacc tgattgaact ccaagaaggg gctggggatg cgcaaacctt
    28081 tgtaaattct gtcaaggacg atatttttac agaacgtatt tacgttttca cgccagatgg
    28141 tgcggtgcgt gagttgccta aggactccgt gcccattgac ttcgcctatg agattcatac
    28201 caaggtcggt gagcgagcaa caggtgccaa ggtcaacggc cgcatggtgc ctctgacgac
    28261 caagcttaag acaggcgatc aggtggaaat tatcacctct gccaactctt tcggcccaag
    28321 tcgtgactgg gtcaacctgg ttaaaactca caaggcccgc aacaaaatca agcagttttt
    28381 caaaaaccag gacaaggaac tttccgtctc caaggggcgt gaaatgctcc agaacctact
    28441 ccaagaaaat ggctacgttc ccaaccaata cctggaccgt cgccacatgg acgaagtcct
    28501 gcaaaagacc agctacaaga ccgacgaatc cctttttgcg gcagttggtt ttggagaaat
    28561 ctctgccgtg tccgtcttta accgtctgac agaaaaagag cgtcgcgaag ctgagcgggc
    28621 taaggcaaag gctgccgcgg acgaattggt caacggtggc gaagtcaaac acgacaacaa
    28681 agatagtttg aaaatccgtc acgaaggtgg cgtggtcatt gaaggggcgt caggcttgct
    28741 gatacggatt gccaaatgct gtaatccagt acctggcgat gaaattgtcg gctacatcac
    28801 caaggggcgt ggggtagccg ttcaccgtgt agactgtatg aacctcaaga gtcaggaaaa
    28861 ctatgatgtc cgcctgattg atgttggttg ggaggatgaa aattcgacca aggaatacat
    28921 ggcaaatatt gatatttacg gtcttaaccg ctcaggactg ctcaacgatg tcctcaaagt
    28981 tttgacaaat gccagcaaga acatttcctc ggtcaatgcc cagccaacca aggatatgaa
    29041 gtttgcgacc atccacgttt cctttggtat ttctaacctg gcaaccttga ccagtctggt
    29101 ggacaagatc aagtcggtgc cagaagttta ctcagtgaaa aggactaacg gataagatga
    29161 aaattgtact acaacgtgta tcacaggcca gtgtgaccat cgacggaagt atccatgggc
    29221 aaattgatca agggcttttg ctcctagtcg gtgtggggcc agatgacagc caggaagacc
    29281 tggactatgc tgttcggaaa attgtcaaca tgcggatttt ttcagatgag gcaggcaaga
    29341 tgaacaagtc tgttcaagat gtggcgggca agattttatc catttcccaa tttacccttt
    29401 ttgcggacac caaaaaaggt aatcgccctg cttttacagg agcggcagct cctgccctag
    29461 ccagccaact ctatgatgct tttaaccaag ccctgtcagc ctttgtgcct gttgaagtgg
    29521 ggatttttgg ggcggatatg gcggtcagcc tggtcaatga tgggccggtg accattgtgt
    29581 tagataccaa aaatcgctag acctctatac tttttgtgtc tattttgata tactgaaagt
    29641 gaattagatg tggaggtgtg ccatgaaaaa cttactgacc aatcattttt tctacctagt
    29701 ggtagcattt accttgattt tggtgattta ctttagtgga attgacaaac gctggattat
    29761 tctggcaagt tttctctatt tcattccttc gcagatttta taccgtcgcc gccttaaaga
    29821 gcggctacaa gaagaccagc ccaagtaggc tggttttttg atgtgtaaat tggactacaa
    29881 ttctttatta aatatgctat aatagttttt gcagaaaagt aaagacggag gctctaattt
    29941 ctgaaaggta ggtgggagcg gtacagaact caacttgtag aaattgagtt ccctttgcct
    30001 ccatatttgt agcttcaggc taaaatagtc cactggacta ttttactacc gcccccgcac
    30061 agttgattag gtcagatttg gagtgcgaag cacgaacaaa tctgccaatc aaccactgcg
    30121 ctgagatgtt gacgcgaatt aagagaagtg gaatggaact ttttgttcta ctatgcaaat
    30181 catcaaaatc taacagaaag gctagcccaa gccagctggt aagtgaactt actcatctgg
    30241 caacgacaaa tcctataaga tttgtctagg gctcgcacta gctcgagttt tgaaaaatat
    30301 cgtttcaaaa ctctcacgtc gaaggcttta gcttgtcaac ctttgaggtg ctaacactca
    30361 tgtttgtagc tggtacagtc atccagtttt tcttttatta ctttgttaac tcgctttgcc
    30421 gtactctgca ggggtaactt gctttcgcaa gtgctatcta caaccttgta cagtcactcg
    30481 actgtacaag ctgtctgcag ctcgttgcct agtactaaaa gtaaactggg tgactattat
    30541 cttttatcgc tctcgtgatg ttagtgcttg aattggtaaa attgacaaaa aaataaccgt
    30601 ctataacttt ggcgagttaa cggttatttt ttcataattt ataacaagcc accgtcttaa
    30661 acggttctgc attgggtagt tgtttccagc aactaccttt ttctatgttt attatacatc
    30721 ggtaggtcta tcaagtcaag ttggacattt atcttttgct gaaatatgct ataataatga
    30781 ttattactta caaaaaatgt aggagatttc gatgcttaat atttttgtat tagaagatga
    30841 tttttttca
//
LOCUS       DASGAC010000006        28754 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.006, whole genome shotgun sequence.
ACCESSION   DASGAC010000006 DASGAC010000000
VERSION     DASGAC010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 28754)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28754)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28754
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.006"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(152..691)
                     /gene="nusG"
                     /locus_tag="U1335_000225"
     CDS             complement(152..691)
                     /gene="nusG"
                     /locus_tag="U1335_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEM5230742.1"
                     /translation="MYDSFDKGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEI
                     PTQTVQVEKNGEIKEVEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKP
                     TPLLEEEIRQILVSMGQTVQEFDIDVKVGDVVRIIEGAFSGYEGKVAEIDNNKVKMVI
                     SMFGNDTIAEVNLNQIAEL"
     gene            complement(801..977)
                     /gene="secE"
                     /locus_tag="U1335_000226"
     CDS             complement(801..977)
                     /gene="secE"
                     /locus_tag="U1335_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEM5230743.1"
                     /translation="MKFIKDIIRILKDTSWPTRKQSWTDFVSVVEYTAFFVAVVYLFD
                     LILSRGIMSLINLF"
     gene            complement(987..1139)
                     /gene="rpmG"
                     /locus_tag="U1335_000227"
     CDS             complement(987..1139)
                     /gene="rpmG"
                     /locus_tag="U1335_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015912025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEM5230744.1"
                     /translation="MALKKASLACTVCGSRNYSISLSSNPKPTRLEVNKFCKHCGQYT
                     VHKETR"
     gene            complement(1173..3386)
                     /locus_tag="U1335_000228"
     CDS             complement(1173..3386)
                     /locus_tag="U1335_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEM5230745.1"
                     /translation="MDDLQHQPIEVPEDFQIDHEDRPSRRRRGNRGSVDKPKKKSRIP
                     EPIRKFWRRYQLTKILIILMVLTVLTVGGYLFFLAKTANVGDLQQALKATTIIYDKDG
                     AEAGTLSGQKGTYVELDAVSDNLENAVIATEDRSFYKNSGINYQRTILAALTLGRSGG
                     GSTITQQLAKNAFLTQDQTISRKAREFFLALEINKKYSKQEILTMYLNNAYFGNGVWG
                     VEDASQKYFGIPASDLTLEQAAVIAGMLKGPEIYNPYYSLENAVNRRDTVLQNMVNAG
                     YIDQATADAGFQVDLASQLSDTYTGKQSNYSYPSYFDAVIAEAIERYGLKESDIINNG
                     YRIYTEMDQNSQASMQVIFNDETMFPTSSFDGTHAQAASVALDPRTGGVRALVGRVNS
                     SEDVVFRTFNFATQAKRSPGSTIKPLVAYAPAVAAGWSIDMALDNHTETYGDYTLHNY
                     DYSTSDTIPMYQALALSYNLPVAYIVNTLGIDKAFEYGQKFGLDMENVEKVLGVSIGS
                     GVETNPLQMAQAYATFANKGVMKDAHLITRIETASGKVLAEHRETSTKVIDRSVADKM
                     TAMMLGTYTNGTGVTADAANYYIAGKTGTTETSFDVNLVNDQWHIAYTPDLVISQWVG
                     FEQTDENHYIDSSSYWMAPSVFQTVANSILPYTAGTQFEVENAYAQNGIVEVAPDEAA
                     QTESSLGQEQVQEISDQAKNLIEQTKQNLIDAQLPERAKTLWDNITSWFGELSNP"
     gene            3539..4507
                     /locus_tag="U1335_000229"
     CDS             3539..4507
                     /locus_tag="U1335_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000081018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM5230746.1"
                     /translation="MTQVYDITIIGGGPVGLFAAFYAHLRQAKVKIIDSLPQLGGQPA
                     ILYPEKAILDIPAFPSLTGQELTDNLLAQLAPFDTTICLNETLTAIEPGETITLTTNK
                     GSHQTKTLIIAMGGGAFKPRPLEIDGAGSFDNVHYHVSNIQQYADKDIVVLGGGDSAV
                     DWSLAFEKIAKTTQIVHRRDNFRALEHSVEELKQSSVTIHTPFIPKGLAGENGRATAI
                     DFDKVKSEDKLSLSFDHLFVNYGFKSSVGTLKEWGLELNRHRIIVNSKQETSVPGIYA
                     IGDCCFYEGKIDLIATGLGEAPTAVNNAMNYLNPNEKVQPKHSTSL"
     gene            4509..5375
                     /locus_tag="U1335_000230"
     CDS             4509..5375
                     /locus_tag="U1335_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM5230747.1"
                     /translation="MKIDIRIPQAFPQLTVKEVLEDYFLIPRKIRHFLRTKKHVRVNG
                     ELINWQSPIAAGDLLELTFDQEDYPEKSIPLGQANLVEELYQDEHLIIVNKPEGMKTH
                     GNEPTEIALLNHVSAYVGQTCYVVHRLDMETSGAILFAKNPFILPILNRLLEDKVIYR
                     DYLALCQGQLKKTDWTITDKIGRDRHDRRKRVVDNRKGQTALTQVRRLKTLGKNSLVS
                     CRLQTGRTHQIRVHLAHHGHALIGDPLYSQVAAPRLMLHARKLSLTHPLTLEEISVEA
                     RSESFERIVKKS"
     gene            complement(5401..6213)
                     /gene="purR"
                     /locus_tag="U1335_000231"
     CDS             complement(5401..6213)
                     /gene="purR"
                     /locus_tag="U1335_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pur operon repressor"
                     /protein_id="HEM5230748.1"
                     /translation="MKLRRSERMVVISNYLINHPYELTSLNTFAEKYESAKSSISEDI
                     AIIKKAFEESSIGHIETITGASGGVVFTPSISKTESVEIAQALRDQMAESNRILPGGY
                     IYSSDLLSTPHILKNVGRIIADAFKDEKIDAVMTVATKGVPLANAVANVLNVPFVIVR
                     RDLKITEGSTVSVNYVSGSSDRIEKMFLSKRSLKAGSRVLIVDDFLKNGGTINGMISL
                     LSEFDSTLVGVAVFAENQKGDRSVANYKSLLAVTDINVKENRVDVELGNIFE"
     gene            complement(6303..7181)
                     /locus_tag="U1335_000232"
     CDS             complement(6303..7181)
                     /locus_tag="U1335_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEM5230749.1"
                     /translation="MAVKILTCKPLTKGWSADQKYQVQLEDGRYGLLRIAERTAYETK
                     QAEFRLVQSLFGQDLPVAEPLSFWADDLSVYTLYEWVEGQDMNEVASSLSDSVLYDLG
                     CQSGQFLRNLHALPIDQSQRDWNNYYQAKIDSKLEAYRTCSHSYPNGQAMIDFVQTNR
                     HLLAGRPIAYHHGDFHTGNFLLGADGKLKILDFDRYDIGDPWEEFNRLIFTADLSPAF
                     ARGQVDAYFDGAIPEEFWKLMALYVTVNSLGALSWAEQVDSLQIPLMQEQAATISEWY
                     ADFTRWIPTWYLQVYS"
     gene            complement(7181..8122)
                     /locus_tag="U1335_000233"
     CDS             complement(7181..8122)
                     /locus_tag="U1335_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease YhaM family protein"
                     /protein_id="HEM5230750.1"
                     /translation="MKINQMKKDEFFEGFYLIKTAEVRQTRAGKDYLALTFQDDTGEI
                     EGKVWDAQPGKIKDFTAGTVVHMQGRREVYNNTPQVNQLVLRLPKAGEPNDPADFKEK
                     PPVDVKDTKDYLSQMIFRIENATWQRIVRALYSKYDKEFYSYPAAKTNHHAFYSGLSF
                     HTATMVCLADKIGDIYPQLNKSLLFAGIMLHDLAKVIELTGPDNTGYTVRGNLIGHIS
                     LIDEEITKVLVELGIDDSLEEVTVLRHVILSHHGLLEYGSPVRPQIMEAEILHMIDNI
                     DAEMMMMLTALDKVGPGEMTNRIFAMDNRAFYKPNID"
     gene            complement(8112..9350)
                     /gene="rmuC"
                     /locus_tag="U1335_000234"
     CDS             complement(8112..9350)
                     /gene="rmuC"
                     /locus_tag="U1335_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HEM5230751.1"
                     /translation="MDIVLLILLILVLVALVFLYGKWQSLTLLLQDQAEDTADNLSDQ
                     LSYQLENATLKQQQAIHQEVERLRTELYQQLTDIRQELSKSHLETRDATDRRLQAIQE
                     SNEKRLEEMRQTVEEKLEKTLQTRLQASFETVSKQLESVNRGLGEMQTVARDVGSLNK
                     VLSGTKTRGIMGELQLGQIIEDILTPSQYEREFATVSGSSERVEYAVKLPGRTEGDYI
                     YLPIDSKFPLADYYRLEDAYESGDKDQIDLHRKNLLAAIKRFAKDIQNKYLNPPETTN
                     FGVLFLPTEGLYSEVVRNPIFFDELRRQENIVVAGPTTLSALLNSLSVGFKTLNIQRS
                     ADDISKVLGNVKLEFGKFSDLLLKAQKQLNQASSNIDKLLTTRTNAIERSLRTIDLYE
                     DDQTKGLLGLSPLDEEDNEN"
     gene            complement(9351..9983)
                     /locus_tag="U1335_000235"
     CDS             complement(9351..9983)
                     /locus_tag="U1335_000235"
                     /EC_number="2.7.6.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine diphosphokinase"
                     /protein_id="HEM5230752.1"
                     /translation="MIKIAVIAGGSLACLPEPADLYVGVDAGSLRLLEASLPLDWAIG
                     DFDSVTSEELGRIKDQAERFLQAPAEKDDTDLELALKEVFKAYPQAQVRIYGALGGRM
                     DHMMANLFLAAEPDLAAYMEQIELVDSQNIVRFRPAGQHRLSPIAGMNYISFMPSDQS
                     RLTIRHAKYPLDASNYFFKKCYASNEFIDRDIDIQLNQGYVVLIYSKDRD"
     gene            complement(9976..10635)
                     /locus_tag="U1335_000236"
     CDS             complement(9976..10635)
                     /locus_tag="U1335_000236"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEM5230753.1"
                     /translation="MSHFKIAPSILAADYANFEKELKRLEKTGVEYVHIDVMDGHFVP
                     NISFGADVVAAMRPHSKLVFDCHLMVSNPENHIETFARAGADILTIHAEATVHLHGTL
                     QKIRAAGMKVGVVINPGTPLVTIEPVLNLVDQVLLMTVNPGFGGQAYIPEVAEKIANL
                     VKLREAKGLNFDIEVDGGIDDKTIHSAKNAGANVFVAGSYLFKGDLDANVAKLRAALH
                     D"
     gene            complement(10650..11525)
                     /gene="rsgA"
                     /locus_tag="U1335_000237"
     CDS             complement(10650..11525)
                     /gene="rsgA"
                     /locus_tag="U1335_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HEM5230754.1"
                     /translation="MQGRIIKALAGFYYVEADGQIYQTRARGNFRKKGQTPYVGDFVD
                     FSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSAKEPDFNANLLDRFLVLLEQK
                     DMDPIIYISKMDLVEDRTEMDAFKAIYEKIGYPFVYCLEELTPLLQDKVTVFMGQTGV
                     GKSTLLNRIAPELALETGAISDSLGRGRHTTRAVSFYNVFGGKIADTPGFSSLDYEVK
                     EAEALTDCFPEIAESSQDCKFRTCTHTHEPDCAVKEAVASSAISQSRFDNYLQFLSEI
                     QNQRETYTKVSKKFK"
     gene            complement(11684..12751)
                     /locus_tag="U1335_000238"
     CDS             complement(11684..12751)
                     /locus_tag="U1335_000238"
                     /inference="COORDINATES: protein motif:HMM:NF012948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5230755.1"
                     /translation="MQVKKFAKWGLALTSTLVLGGAIAPVGNQLLGGSAVVYAQDGAV
                     FEPYVVEFYIDGEYWGVANRGYNSGWPYVRLEPYSEEFPGKEWPREELGGFTSNLPNV
                     SVVTKEDLDSIGSVVKVYWTRKPVETLPVEQPTEQPVATPADQPVEKSISVLIGAISE
                     VDGPLSHYYVTINPGETKTVETPKVDGYKLDQYTSPTYELTYDNALKQLNSAGFAWVQ
                     FWMIKDAAPETPVEQPTEQPVEQPAEQPAEQPAEQPVEQPTEKPAETPTDKPVEQLTD
                     ASSLTDQTAGKVQAVTATDKKTVDKSAPSTPAVKPEEVSQPVAKTLPKTGDSSSMLLV
                     LGGVMSGLSGLGLAATSRKRD"
     gene            complement(12986..13663)
                     /locus_tag="U1335_000239"
     CDS             complement(12986..13663)
                     /locus_tag="U1335_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEM5230756.1"
                     /translation="MKKIIKQYQEKGSVVIGYARVSSRDNRQELGLEVQKEALHFCDR
                     LYMEKESGGHQDRPQLQKAIRLAKACAESGIETSFVVYKLDRLTRKMLHLSAIISDLT
                     SHQIRLQSIHEQIETDSLTGRFFCLMLGYVAEWELQAISDRTKDGLRKARERGVKLGN
                     KGISKSKEKQVIQSYVVEETTVRDMVNQLNISTATIYQVLKRNNIPFRRQKAHNSLTE
                     TGENDKL"
     gene            13794..13875
                     /locus_tag="U1335_000240"
     tRNA            13794..13875
                     /locus_tag="U1335_000240"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13827..13829,aa:Leu,seq:cag)
     gene            complement(13948..14283)
                     /locus_tag="U1335_000241"
     CDS             complement(13948..14283)
                     /locus_tag="U1335_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003017270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM5230757.1"
                     /translation="MTDKKKYELVISDRAKQDLQAIYDYIQLNFYSQQAADSKIDLIL
                     TALEMLELFPEACPLVSSRGFGNLTADGKSYRYMPIEHYLVFYFIEGYQVFVARILHS
                     KQNWITLLK"
     gene            complement(14276..14569)
                     /locus_tag="U1335_000242"
     CDS             complement(14276..14569)
                     /locus_tag="U1335_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HEM5230758.1"
                     /translation="MGATQQVNFRADSFYYQQTKELLAGESMTVSDVLNATLRKIATG
                     TIDAQEFVTKDSREDSNKIAFEELKKEILLGHQDILAGKTSSLVAVRKEFGLD"
     gene            complement(14824..16416)
                     /locus_tag="U1335_000243"
     CDS             complement(14824..16416)
                     /locus_tag="U1335_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5230759.1"
                     /translation="MKKIIYQLRSVIAIQLVFHILYSLTNVVLPELNKYLFDHIFQMG
                     WTGLVWLLLAYALTIIANSVFQYISQVYEWKVSQGFYVTAKKGLANSLLSQPLAKFSE
                     KNVSAYLSIFDNDLETIEESYLSPLMDIIRSSLSMVIYAVSLFLFVHPLVAVGIILSS
                     ALAVFIPKWISGPLSQRQRAFLQSLESYFQVVTDLFSAKNRVNTETFGSISRVHHRSV
                     EESEQARFRFGQFKTLANVVNGFSMFLVQLTAFGLVGYLLLQKELTIGAAIATFSYVE
                     NFIYPMKYILLDVNYIHSTKETVANLEGYLAGQVLSEQVPSYPKVTALEVRDVAYHVG
                     ELAVADVSYRFDKGKKYAIIGPSASGKSTFLRVLAGELALDKGSVSYLENDVLHEMET
                     ATAFSLNQFEHLYHTDFESNVSVLGTYEKGRDVMLGLLRSLPTSLQDTLRTTTDPSLL
                     SGGEKNVLCLLRALMSGKEILLLDEPTAHLDPALTKQVLTNLLQLEDKLIITILHESD
                     SAILDMFDVVLEMRDGKLCEKI"
     gene            complement(16451..18028)
                     /locus_tag="U1335_000244"
     CDS             complement(16451..18028)
                     /locus_tag="U1335_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5230760.1"
                     /translation="MKKRNFWLTLTCIFAVALLNVGFLYQYRYIIDAIAAGDRQAFVS
                     YFVLMGLTVLVMLIFEYIRQIANVSYLNQVGFQLQATFIGKMFDLPFRQFVEQGAGAY
                     ISQLNNDLETVKEDYYDAFFTIFQGACTFGIASLALLSLDGLTAIFLILISFLPVVIP
                     YLFKKRRRLNQEAISDSQQVYNTRVSDVFLSYLQVKNSRQRQQVLDGLNDRYQAVNDK
                     VNQANRTTVTMRLLVGFVFYLTTLSIIFIGGFQVFSGALTIGGLTAILTISEQLVDPI
                     NSIAAAFLDRHAVKELKKEFELSTLGQETKGQELASAFQSMQLVKASYAIGEKQVFED
                     LTVAFERGKKYLILGESGSGKSSLALILTKNSQLQVGDIYFDKTSLSDLSYQAIQDKI
                     AYLPQEGALFHDTVLYNLTMGQDVSEDRLMSLIKTMNLDSRFPSYTSLSEEISDDSGL
                     SGGQKQRLLLIRALLQDKDILLLDESLSALDQETYTVIEAYLTSLADKTLIHISHRVS
                     DDVLSRYDGVVRIGESN"
     gene            complement(18132..18998)
                     /locus_tag="U1335_000245"
     CDS             complement(18132..18998)
                     /locus_tag="U1335_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5230761.1"
                     /translation="MNRFGRTLKLIREGKGKSLAEVAKGHISTSQLSRFENGESDITV
                     SKLFGVLAEMNVDVDEFVYASQDFKKDELTRILEQLKQSIYIRDVVTIKKILSEQLAK
                     AERDSRREFHRLNAILIAYKLSDLDKTVVVSKEDTAFLTDYLFRVDNWSYYELLLFAN
                     TMDELEHQTMMLFCRELIGRTQFYREMKLHRLAVSQILLSAYLVSVQHKELADAIFLE
                     KTIKGLFFDETEIFERILFKFGKTFYDYRKTGSANAILEMRKCIELLRAVDSQNIADW
                     YETILEKIANEK"
     gene            complement(19125..21569)
                     /locus_tag="U1335_000246"
     CDS             complement(19125..21569)
                     /locus_tag="U1335_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HEM5230762.1"
                     /translation="MKQINPKASKQFILVMIMTILLAMGRALLLSGVSFPLWFIPLPL
                     LAYSIFTFYILVLLDTYEKFVKTKTFAKYVGYFLGFLYLVNLVYRLNAKKYQPWNIFR
                     NNLFQFELLLMLLLPVLLAFLWRKKTGIREKLSQWSANHLVPDGYLFLTSLLSLSPLA
                     ISYWKDSHYESLVEKGSYIEFFSQTPLFAPIHFIGTYIFLRYLHKAFVEFKANRTNVH
                     SMLFISLALATLSHIGYQASMAGGTGSYFTRHLFPGAIVFQIACLFFLNVIISLVINR
                     QILSVAVIAGLNVTLIAANFLKFRYRSEPLTPNDFKWVGNLGMILSFISLRVVLVSLV
                     FIVLLVFIYRRIHKKYFQGRIVASIWKRLAGVSVIVSLILGMGWAIRNEKEHKIAGWI
                     PILSQVNNWRNVDWKGYAFVARYRTLSFLWLQQLSKTSMEMPENYSEKTMKAIVKKYT
                     ALAEEINAERTGQLTDQTVIYILSESLADPRRIPGVTLSQNVLPNIEYIMSQTTSGLM
                     KSDHYGGGTANIEFQVYSGLPFYNYNSSISSVYLDVAPNMKKLPSISDLYPADNRIAI
                     HPYYDTSYNRNSIYKQLGIEQFYTLNSAKYPLTVTAEDYQGNFVSDKKTYDLILDQVR
                     SADTSFVSAITMQNHVQWNSAEPASITASGEGFTAEENENLTSYVRLLSFTDQATRDF
                     LDQLKTLDKKVTVVFYGDHLPGLYPESAFVTDPSAQYKTDYFVWSNFETEDYHYDLVN
                     SSDMNALMLETTNNKVSPYYALLTEVLHKDRVGQAERDAKVAEELKLVQYDLSTGKGY
                     LLKYKDFFKVATETTE"
     gene            complement(21582..23312)
                     /locus_tag="U1335_000247"
     CDS             complement(21582..23312)
                     /locus_tag="U1335_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230763.1"
                     /translation="MLKTMLKKHPHLVALGLFVGFSLLLLVPHLLTKGMVTGADLIFH
                     YNRFYDAAMQMKEGNFSYIISLYGYQQSGRIVNALYGPYFAYLQGALVLLSGTWFRYQ
                     ILSNLLLGTLSATSLYLLMREVKVKYTHSILLSLFFVTTYSIQYWWATQGFTSWGVAL
                     FPLCLIPAVRFLQTKKVPIFLMAGAVGLMLQVHMLSTLFLVIAYGVLFLIGWWKSDSK
                     MKIIGQVALSVGIFLLLTINIWLPLVYINATNTLVPPFVNKKFVFNTVTWLKTAFLYY
                     PYPLPIFFGIYLYFLVKNWKKQSLVLGGLALTYAVFLILSTNLFPWQLFAGKGITLVE
                     LIQFPFRFFLYANALLLAVVGVQVSGLSEKMQKIFSGLTVISLLVSVGFLWNESYKEI
                     KGHYYSDTFLQKRIHTTLYGTTEELRASFYSKDLGEFIHIAQKSTPDYVPDLSDSTGH
                     ITNEESDNTYFTYRDQVILPNQEFTKEVDGNQLVVTWTASEAEEIALPIIVYQDSQLV
                     LNDQVLDREEMELSTIGVPTVTSKKGQNTLVLSYKQQWWLSPVIIISLTGWLLWLIYY
                     IFAYRKSNLS"
     gene            complement(23514..24386)
                     /gene="rsmA"
                     /locus_tag="U1335_000248"
     CDS             complement(23514..24386)
                     /gene="rsmA"
                     /locus_tag="U1335_000248"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018030634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEM5230764.1"
                     /translation="MRIADKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEI
                     DQNVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRLIPILADTLGRFDNVTVVNQDIL
                     KTDLQTQIQNFKNPDLPIKVVANLPYYITTPILMHLIESKIPFSEFVVMMQREVADRI
                     SAEPNTKAYGSLSIAVQYYMTANVAFIVPRTVFVPAPNVDSAILKMVRREQPLVSVKD
                     EDFFFRVSKASFVHRRKTLWNNLTNHFGKSDEVKDKLTQALGMAELEASVRGEALSMA
                     DFARLSDSLQEVGL"
     gene            complement(24405..24936)
                     /locus_tag="U1335_000249"
                     /pseudo
     CDS             complement(24405..24936)
                     /locus_tag="U1335_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736466.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
     gene            complement(24950..25207)
                     /locus_tag="U1335_000250"
     CDS             complement(24950..25207)
                     /locus_tag="U1335_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Txe/YoeB family addiction module toxin"
                     /protein_id="HEM5230765.1"
                     /translation="MGIHFTEDAWEDYLYWQGQDKKTLKRINKIIKDMQRHPFEGIAK
                     PEPLKYDYQGAWSRRIDAENRFIYMVEADKLYILSLKDHYG"
     gene            complement(25209..25469)
                     /locus_tag="U1335_000251"
     CDS             complement(25209..25469)
                     /locus_tag="U1335_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HEM5230766.1"
                     /translation="MEAIVYSHFRNHLKDYMKKVNDEFEPLVVVNKNPEEDIVVLSKS
                     EWDSLQETLAVARNAYLSQKVLRGMAQVKAGQTQERNLIEAD"
     gene            complement(25545..26000)
                     /locus_tag="U1335_000252"
     CDS             complement(25545..26000)
                     /locus_tag="U1335_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase"
                     /protein_id="HEM5230767.1"
                     /translation="MSRTEQVILTNMCMITDGQRVLVQDRKSEKWPGITFPGGHIEPN
                     ESLIVSVIREIKEETGLTVSNLELCGIQNWTDPTDHYRYLVFCYKTSHFSGSIQSSDE
                     GEVFWIDRADLKNVQLADGFEAMLEIFEQPQLTENFYWFEDGEWKVENR"
     gene            complement(26007..26336)
                     /locus_tag="U1335_000253"
     CDS             complement(26007..26336)
                     /locus_tag="U1335_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM5230768.1"
                     /translation="MKFESYSVILAPAVEKELAVIYAYFSAQFSEEIAKRRIEMIVQA
                     LESLQIFPERGFNADNRFGKQIDPSHLTRGYVIGKDYIALYRVVEKEVRVGHLFATKS
                     DYVKLLK"
     gene            complement(26326..26613)
                     /locus_tag="U1335_000254"
     CDS             complement(26326..26613)
                     /locus_tag="U1335_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system antitoxin subunit"
                     /protein_id="HEM5230769.1"
                     /translation="MITIKKDAQVNFKTDSRLLEKAKEVFAVNQLDLTAGFNLFLQNI
                     AVKNELPILTEEELEREELFLQLQKEIQENQQAIEAGHGISLERVKEKYEI"
     gene            complement(26711..27079)
                     /locus_tag="U1335_000255"
     CDS             complement(26711..27079)
                     /locus_tag="U1335_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230770.1"
                     /translation="MDRVYVVKCLVKNEFEPSYENYSSYEEVTYLLPADVLVWEDEQV
                     DKNKLADYLRGLVEDGYVNADGIWKQSRLFHIAGVQEMDDRVEFDGPAVEVYRWFYNF
                     ERLVTEEEFLNLYYFDDLGR"
     gene            complement(27072..27662)
                     /gene="rnmV"
                     /locus_tag="U1335_000256"
     CDS             complement(27072..27662)
                     /gene="rnmV"
                     /locus_tag="U1335_000256"
                     /EC_number="3.1.26.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease M5"
                     /protein_id="HEM5230771.1"
                     /translation="MQGVCSELTQKIKIQEVLVVEGKDDTVNLKRFYEVDTYETRGSA
                     ISDDDLERIEKLHDLRGVIVFTDPDYNGERIRKIIMQAIPTVKHAFLQRDEATPKSKT
                     KGRSLGIEHASFEDLEKALAGVRGYYDDEHNFDISKSDLMRLGLLMGGDSRRRREYLG
                     EQLRIGYCNGKQLLKRLELFGISLVEVEEAMGSYHG"
     gene            complement(27625..28407)
                     /locus_tag="U1335_000257"
     CDS             complement(27625..28407)
                     /locus_tag="U1335_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEM5230772.1"
                     /translation="MIEIFDTHTHLNVEQFDGRVQEELDFAKEMGVTLHNVVGFDRTT
                     IDKAMELADQHPEIYLTLGWHPTEAGTYDEEVESYLLEALKHPKVIALGEIGLDYYWM
                     TADKETQARVFKRQMELAKQLDLPFVVHTRDALEDTYQIIKEVGVGPRGGIMHSFSGT
                     LEEAQAFMDLGMHISFSGVVTFKKAVELQEAAQALPLEKILVETDAPYLAPVPKRGRE
                     NRTGYTRYVVDMLAQLRNQSVEEVARATYENARSLFRIDSEN"
     gene            complement(28492..28629)
                     /gene="rpmH"
                     /locus_tag="U1335_000258"
     CDS             complement(28492..28629)
                     /gene="rpmH"
                     /locus_tag="U1335_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEM5230773.1"
                     /translation="MKRTFQPSKIRRARKHGFRSRMATKNGRRVLAARRRKGRKVLTV
                     A"
BASE COUNT         8052 a         6794 c         5898 g         8010 t
ORIGIN      
        1 ctgctagatg tcagtttgtc ttttttcggg cttttttgtt ttgttatttg gtaaaattca
       61 gttaaaacag aaaaagtttt tggacaaatt ttggacaccc aaaatatcaa caaactcccc
      121 atagcttgtc gctatgagga gtatggatat attacaactc agcaatctgg ttcaaattaa
      181 cttcagcaat ggtatcatta ccaaacatag agataaccat cttaaccttg ttgttgtcaa
      241 tctctgccac ctttccttcg taaccagaga aggcaccttc gataattctc acaacatcac
      301 caaccttgac atcaatatca aattcttgaa cggtttgtcc catagacacc aagatttgac
      361 gaatttcttc ttccaaaagt ggagttggtt ttgaacggtt accgtgtgaa cccacgaaac
      421 ctgtaacgtt tggcgtgtta cgaaccacaa accaagcttc atcggtcata accatctcaa
      481 ccaaaacata accagggaaa cggttttctt ccacttcctt gatctcaccg ttcttttcaa
      541 cctgaacagt ctgagttgga atttctacac gaaggatgtt ttccaacatg ttataagtgt
      601 gggcacgttg gagcaagttt tccttcactt tattttcata tcctgagtag gtctgtaaaa
      661 caaaccagcc tttatcaaaa ctatcgtaca ttgttacttc ctttctttgg aaacacggaa
      721 tttttagacg ctaaaaaaag cccgaaggct ttcgcttttc tttattatat cacttccatt
      781 ttacaaatgg caagtatttt ctagaaaaga ttgatcaagc tcatgattcc tcgtgacaaa
      841 atcaagtcaa agaggtaaac cactgctacg aaaaaggcag tatattccac tacagacacg
      901 aaatccgtcc agctctgctt acgagttggc caagacgtat cttttaaaat gcggataatg
      961 tctttgataa atttcatgcg tgactcctat ctggtttcct tgtgaacagt gtattgtcca
     1021 cagtgtttac aaaatttatt tacttctaac cgtgttggct tgggattgct cgaaaggctg
     1081 attgaatagt ttcgagaacc acaaacagta caggctaggc ttgctttttt tagtgccata
     1141 aagccctcca tccttttcat tctaccatgt ttttatggat ttgacaactc tccaaaccaa
     1201 gacgtgatgt tatcccacaa ggtttttgct cgttctggta actgggcatc gattagattt
     1261 tgtttggttt gctcaatcaa gtttttcgcc tgatctgaaa tttcttgtac ctgttcttga
     1321 ccaaggcttg attcagtttg cgcagcttca tctggagcta cttctacaat accattttgt
     1381 gcataggcat tttctacttc gaactgagtt cctgcagtat atggcaagat tgaattggct
     1441 acagtctgga agacagacgg agccatccag tagctactgc tatctatata atgattttca
     1501 tccgtctgct caaaaccaac ccactgactg atgaccaaat caggtgtgta ggcaatatgc
     1561 cactgatcat tgacaagatt gacatcaaaa ctcgtttcgg ttgttcctgt tttcccagca
     1621 atataataat tggcagcatc tgctgtcact cccgtaccat tggtataggt tccaagcatc
     1681 attgctgtca tcttatctgc gacagagcgg tcaatcacct tggtacttgt ttctcgatgc
     1741 tctgccaaaa ccttaccact agctgtttca atacgagtga tgagatgggc atccttcatc
     1801 acacccttat tcgcaaaagt agcgtaggcc tgggccattt gcagaggatt agtctccact
     1861 ccagaaccaa ttgaaacacc caaaactttc tcgacatttt ccatatcaag tccaaacttt
     1921 tgtccatact cgaaggcttt gtcaatcccc aaggtgttca ctatataagc cactggtaaa
     1981 ttgtaagaga gagccaaagc ttgatacatt ggaatggtat cagaagtcga ataatcatag
     2041 ttatgcaagg tgtaatcgcc gtaggtttct gtatggttat ccagagccat atcaatcgac
     2101 cagcccgccg ctactgctgg agcataggca acaagaggct tgatcgttga accaggactg
     2161 cgcttggctt gtgtcgcaaa gttgaaagtc cgaaagacca catcctctga actgttaact
     2221 cgaccaacca aggcgcgaac tccaccagtc ctaggatcaa gagctacgct ggcagcctga
     2281 gcatgggtac catcaaaact tgatgttggg aacatagtct catcattaaa aatcacctgc
     2341 atgctggctt gagaattttg atccatctct gtgtaaatcc tatagccgtt attaataatg
     2401 tctgattctt tcagtccgta tcgctcaatc gcctcagcaa tcacagcatc aaaataggat
     2461 ggataggaat aattgctttg tttccctgta taggtatctg aaagctgact ggctaggtct
     2521 acttggaaac ctgcatctgc agtcgcttga tcaatataac cagcattgac catattttgc
     2581 aggactgtat cccgacgatt aactgcattt tctagagaat aataaggatt ataaatctca
     2641 ggtcccttga gcatccctgc tatgacggct gcttgctcaa gagtaagatc actggctgga
     2701 ataccgaagt atttttggct tgcatcttcc actccccata ccccgtttcc aaagtaagca
     2761 ttgttgagat acatggtcag gatttcttgt ttactgtact ttttattgat ttccagagcc
     2821 aaaaagaatt ctcgagcctt tcgactgatg gtctgatcct gagttagaaa ggcatttttt
     2881 gccaattgct gggtaatagt tgaaccacct ccagaccgac ctaacgtcaa ggcagccaaa
     2941 attgtacgct ggtaattaat gcccgaattt ttgtagaagc tccgatcttc tgtagcgata
     3001 acggcattct ctaaattatc agagacagca tccagctcta cataggtccc cttctgacca
     3061 gacaatgtcc cagcttccgc accatcttta tcgtaaataa tcgttgtggc ttttagcgcc
     3121 tgttgtaaat caccaacatt agctgtcttt gcaaggaaaa atagatagcc acctactgta
     3181 agaactgtca ggaccattaa aatgattaaa attttagtca gttgataacg gcgccaaaat
     3241 ttacgaatcg gctccggaat acgtgatttt ttctttggtt tatcaacaga gccacgattt
     3301 cccctgcggc gacggctagg tcggtcttca tgatcaattt ggaaatcttc tggaacttca
     3361 atcggctgat gttgcaaatc gtccatactt tacctctttc tagtgaattt tgtaccatta
     3421 tacaccattt cctaaaaact agcagaaaaa agcctgcgat aacttgtgac aacagacagg
     3481 gaattttttc caaaaatatg ataaaatagg gtcattctga acaaagaaga ggattcccat
     3541 gacacaagta tatgacatta ctatcatcgg tggcggacca gtcggtttat tcgccgcctt
     3601 ctatgcccac ctccgtcaag ccaaggtcaa aatcattgac tcccttcccc aactgggtgg
     3661 ccagcctgcc attctctatc ctgagaaggc cattttagac attccggcct ttccaagcct
     3721 gacgggacag gaattgaccg acaacctcct tgcccaactg gcaccctttg acaccaccat
     3781 ctgcctcaat gaaaccctga ctgctatcga acctggggaa accattaccc taacaaccaa
     3841 caagggcagc caccagacca agaccctgat tatcgctatg ggtggcggtg ccttcaagcc
     3901 acgtccgctg gagattgatg gtgctggcag ctttgacaac gtccattacc acgtgtctaa
     3961 tatccagcag tatgccgaca aggacatcgt cgtcttgggt ggcggtgact ctgcggtcga
     4021 ctggtccctg gcctttgaaa aaatcgctaa gaccacccag atcgtccacc gacgcgataa
     4081 cttccgagcc cttgagcaca gcgtggaaga gctcaagcag tccagcgtga ccattcacac
     4141 accttttatc cctaaagggc ttgctgggga aaatggcaga gctactgcca ttgattttga
     4201 caaggtgaag agcgaggaca agctcagcct gtctttcgac cacctctttg tcaactacgg
     4261 tttcaagtca tctgtcggca cactaaaaga atggggcttg gaactcaatc gccaccgcat
     4321 catcgtcaac agcaagcaag aaacctctgt ccctggtatc tatgctatcg gtgactgttg
     4381 cttctacgag ggcaagattg acctgattgc gactggactg ggcgaagccc caaccgctgt
     4441 taacaatgcc atgaactacc tcaatccaaa cgaaaaagtg caaccaaagc actcaaccag
     4501 cctataagat gaaaattgac attcgcattc cccaagcctt tccccaactg accgtcaagg
     4561 aagtcttgga agattatttt ctcattccta gaaaaatccg ccacttcctc cgcaccaaga
     4621 aacacgtccg tgtcaacggt gagctgatta actggcagag cccgattgcc gcaggcgacc
     4681 tgctagaatt gacctttgat caggaagatt atcctgaaaa aagcattcct ctggggcagg
     4741 cgaacttggt ggaggaactc tatcaagatg agcatttgat tatcgtcaac aagcccgaag
     4801 gcatgaaaac ccacggcaat gagcctacgg aaattgcctt gctcaaccat gtgtctgcct
     4861 atgtgggaca gacctgttat gttgtccaca ggctagacat ggagaccagc ggagccattc
     4921 tctttgctaa aaatcccttt atcctaccca ttctcaatcg gctcttggaa gacaaggtta
     4981 tctaccgtga ctatctggcc ctctgccaag gtcagctaaa aaagacagac tggactatta
     5041 ccgataagat tggacgggac cgacatgacc gcagaaagcg ggtggtcgat aaccgcaagg
     5101 ggcagacagc tcttacccag gtccgccgcc tgaagaccct tggtaaaaat agtctagttt
     5161 cctgtcgtct ccagacagga aggactcacc aaatccgagt tcatttagcc caccacggtc
     5221 atgctctaat cggtgaccct ctttacagtc aagtcgcagc cccccgcctc atgctccacg
     5281 caagaaaact cagcttaacg cacccgctga cactcgaaga aatcagtgta gaagcacggt
     5341 cggagagttt tgaaagaata gtaaaaaaga gctgaaaacc agctcttttc ttcatatcca
     5401 ttactcaaaa atattcccca actctacatc aactcgattt tccttgacat tgatgtcggt
     5461 cacagcgagc agagacttgt agttagctac gctacggtcc cctttttggt tttctgcaaa
     5521 gacagccacg cctaccaagg ttgagtcaaa ctcagacaag aggctaatca taccattgat
     5581 ggtgccacca tttttcaaga agtcatcgac gatcaagaca cggcttcctg ccttcaaact
     5641 acgcttagac aggaacatct tttcgatacg gtcgctcgat cctgacacat agttgacaga
     5701 aacggttgaa ccttctgtga ttttcaaatc acgacgcaca atcacaaacg gtacattaag
     5761 gacattggca acagcattgg ccaaagggac cccctttgtc gcaactgtca tgacagcatc
     5821 aatcttttca tctttgaaag catctgcaat gatacgaccg acatttttca aaatatgcgg
     5881 tgtagacagc aagtcagatg aatagatata accgcctggc aagatacgat tactttcggc
     5941 catctgatca cgaagggcct gtgcaatttc gacagactct gtcttagaga tcgatggagt
     6001 aaaaacaact cctccactgg caccagtaat ggtttcaata tgcccgatag agctttcctc
     6061 aaaagccttt ttaatgatgg caatatcctc tgagatagat gacttggcag attcatactt
     6121 ttccgcaaag gtattcaaac tagttaattc ataagggtgg ttgatgaggt aattggaaat
     6181 gacaaccata cgctcacttc ttcttaattt catattgttc tcctttttgg ctttttccta
     6241 ttatagcaca taaaaacaca aaaagcgaac cttttttctt gaaaaagttc gctttttcgt
     6301 atttagctat aaacttgtag ataccacgtt ggaatccagc gagtaaagtc cgcataccat
     6361 tctgagatgg tggctgcctg ttcctgcatc aaggggattt ggagggaatc tacttgctct
     6421 gcccaagaaa gagcgcctag actatttact gttacataaa gagccatgag tttccaaaat
     6481 tcctctggaa tagcgccgtc aaaataagca tctacctgac cacgcgcaaa ggctggcgac
     6541 aaatcagccg tgaaaatcaa acggttgaac tcttcccagg ggtctcctat gtcgtagcga
     6601 tcaaagtcta atattttcag tttcccatcc gcacccagta ggaagttacc tgtgtgaaaa
     6661 tctccatgat ggtaggcaat tggtcttcct gccagcaagt gacggttggt ttgaacaaag
     6721 tctatcatgg cttgaccatt tggataggaa tgactgcatg tacgataggc ttctagctta
     6781 ctgtcaatct tagcctgata gtagttgttc cagtcccgtt gactttgatc aatcggtagg
     6841 gcatgtaagt ttcgcaaaaa ctgccctgac tgacagccca aatcatacaa gacagaatca
     6901 gacaggctag aagccacttc attcatatcc tgaccttcca cccattcata aagggtgtag
     6961 actgacaagt catccgccca aaaacttagt ggctctgcca caggcaagtc ttgtccaaac
     7021 aagctttgaa ccaatcgaaa ttctgcttgc ttggtctcat aggctgtccg ctcggctatt
     7081 cgcaaaagcc catagcgacc atcttctagc tgaacctggt acttttggtc cgcggaccag
     7141 cctttggtga ggggcttaca cgttaaaatc ttgactgcca tcagtcgata ttgggtttat
     7201 agaaggcgcg gttgtccatg gcgaaaatgc gattggtcat ctcgcctgga ccgaccttgt
     7261 ccaaagcggt caacatcatc atcatttctg catcgatatt gtcaatcatg tggaggattt
     7321 ctgcctccat aatctgcgga cggacagggc taccatactc cagtaaaccg tggtggctga
     7381 ggataacgtg gcgaagaaca gtcacttcct ccagactgtc gtcgataccc aattccacca
     7441 agaccttggt aatctcttca tcaatcaagg aaatgtgccc aatcagattg ccacggacag
     7501 tgtagccagt attgtctgga ccagtcagtt cgatcacctt ggctaggtca tgaagcatga
     7561 ttcctgcaaa gagcaggctc ttgttgagct ggggatagat gtcaccaatt ttatctgcca
     7621 agcataccat ggttgctgta tggaaggaca agcctgagta gaaagcatgg tgattggtct
     7681 tggctgctgg ataggaataa aattccttgt cgtacttgct gtagagagca cgcacaatcc
     7741 gctgccaagt ggcattttca atgcggaaaa tcatctggct caggtagtcc ttggtgtcct
     7801 tgacatcaac aggtggtttt tccttgaaat cagcagggtc gttgggctcg cctgcctttg
     7861 gtaaacgaag aaccagttgg ttgacttggg gggtattatt gtaaacttca cggcgcccct
     7921 gcatgtgaac aactgtccca gcagtaaagt ccttgatttt ccctggttgg gcatcccaga
     7981 ccttgccttc aatctcgccc gtatcatctt ggaaggtcag agctaggtag tctttgccag
     8041 ctcgtgtttg acggacttca gcagtcttga tcagatagaa tccttcgaag aattcatctt
     8101 ttttcatttg gttaattttc attatcttcc tcatctaatg gggacaggcc aagcagtccc
     8161 ttggtttggt catcttcgta caggtcaatg gtacgaagac tacgctcgat agcgttggtg
     8221 cgagttgtta ggagtttgtc aatattgctg ctggcttgat tgagttgttt ctgagcctta
     8281 agcaagaggt cagaaaactt gccaaattcc agcttgacat tgcccaagac cttggaaata
     8341 tcatcggccg accgttgaat gttgagggtc ttaaagccga cggagaggga attgagcagg
     8401 gcagacaggg tggtcggtcc agctactaca atattttcct gacggcgaag ctcatcaaag
     8461 aaaatcggat tgcgaaccac ttctgaatac agcccttcgg tcggcaagaa caagacgcca
     8521 aagttggtgg tttcaggcgg attgaggtac ttgttctgaa tatctttggc aaaacgttta
     8581 atagccgcta agagattttt ccgatggagg tcaatctggt ccttgtcccc actttcgtaa
     8641 gcatcttcca agcgataata gtccgccaac ggaaacttgg agtcaatcgg cagatagata
     8701 tagtcgcctt cagtccgtcc cggtagcttg accgcatact ccacgcgctc actagagcct
     8761 gaaactgtgg caaactctcg ctcatattgg ctaggtgtca aaatatcctc gataatctgt
     8821 cccagctgta actcacccat gatgccacgg gttttggtac cagacagaac cttgttcaga
     8881 ctgcccacat cacgcgctac cgtctgcatt tcgcccagac cacgattgac cgattccaat
     8941 tgcttggaca ccgtttcaaa ggaggcttgt aggcgggttt gcagagtttt ctccagtttt
     9001 tcctcgactg tttgccgcat ttcttccagg cgtttttcat tagactcctg aatagcctgc
     9061 aaacggcggt cggtggcatc tcgcgtttcc aagtggctct tactcagttc ttgacggatg
     9121 tctgttagct gttggtaaag ctccgtacgg agtcgttcca cttcctgatg aatggcttgt
     9181 tgctgtttga gggttgcatt ttctagttga tagctgagct ggtcagacaa gttgtctgct
     9241 gtatcttcgg cttgatcttg caaaagcagg gtcaagctct gccattttcc ataaagaaaa
     9301 accaaggcca ccaagactag tatcagcaaa ataagtagta caatatccat ctaatccctg
     9361 tccttactgt agatcaggac cacgtaaccc tgattcagtt gaatgtctat gtctctatct
     9421 ataaattcgt tagaggcata gcattttttg aaaaaataat tgctggcatc cagtgggtac
     9481 ttggcatgac gaatggtcag gcgactctgg tccgacggca taaaggaaat gtaattcata
     9541 ccagcaatcg gtgacaatcg gtgctgacct gcaggtcgaa atcggacgat gttctgactg
     9601 tccaccaatt caatctgctc catataggct gccaagtcag gctctgcagc cagaaagaga
     9661 ttggccatca tgtgatccat gcgaccaccc aaggctccgt atatgcgaac ctgggcctgc
     9721 ggatatgcct tgaagacttc ctttaaagcc agctccaagt ctgtatcatc tttttcagca
     9781 ggagcttgca aaaaacgctc ggcttgatcc tttatccgcc ccaactcctc cgaggtcacc
     9841 gagtcaaaat caccgatagc ccagtcaaga ggcagcgaag cttccaatag acgaagagag
     9901 cctgcatcta cccccacata gaggtcggca ggctcaggaa ggcaggcaag ggaaccgcct
     9961 gcaatgacag caatcttaat catggagggc agctctcaat ttggcaacgt tggcatccaa
    10021 atcgcctttg aaaaggtagg agcctgccac aaagacattg gcacccgcat ttttggctga
    10081 atggatggtc ttgtcgtcaa tcccgccgtc cacttcaatg tcaaagttca atcccttggc
    10141 ttcacggagc ttgaccaaat tcgcaatctt ctcagccact tctggaatgt aggcttgtcc
    10201 accaaaacct gggttgaccg tcatgagcag aacctgatcc accaagttga gcacaggctc
    10261 aatggtcaca agaggagtgc ctggattgat gacaacaccc accttcatac cagctgcacg
    10321 aattttttgc agtgttccat gcaggtgaac cgttgcttct gcatgaatgg ttaaaatatc
    10381 tgcacccgca cgtgcaaagg tctcgatatg attttcagga ttggacacca tgagatggca
    10441 atcgaaaacc agcttgctat gaggacgcat agccgcaacc acatccgctc caaagctaat
    10501 atttggcaca aagtgaccgt ccatgacatc aatgtgcaca tactccacac ctgtcttttc
    10561 tagacgcttg agctcttttt caaaatttgc ataatctgcc gccaaaatag acggtgcaat
    10621 cttaaaatgt gacatagagt accaactttc tatttgaatt tcttacttac cttggtatag
    10681 gtttcacgct gattttggat ttcgctgagg aattggaggt aattatcaaa gcgactttgg
    10741 gaaatagcag agctggcaac agcttccttg accgcacaat ccggctcatg ggtatgggta
    10801 caggtcctaa atttgcagtc ctggctgctt tccgcaatct ctgggaaaca atctgtcaga
    10861 gcctccgcct ccttgacttc atagtctagg gatgaaaaac ctggagtatc cgcaattttc
    10921 ccaccgaaga cattgtagaa actgaccgca cgagtggtat ggcgaccacg ccccagacta
    10981 tctgaaatag cccctgtttc caaggctaat tctggtgcaa tgcgattgag aagagtcgat
    11041 ttgccaaccc ctgtctgccc cataaagacc gtcaccttat cctgcaataa tggcgtcaat
    11101 tcctccaagc aatagacaaa aggatagcca attttctcat agatagcctt gaaggcatcc
    11161 atctccgtcc gatcttctac caagtccatc ttagagatat agataatggg atccatatcc
    11221 ttctgttcaa ggagaactag gaaacgatcc agtagattgg cattaaaatc aggttcctta
    11281 gccgacatga taaccaccgc ctgatcgata ttgacaattg gaggtcgaac caaactattc
    11341 ttccgctcat gaatctttaa aatatagcct tctgagtttt cctccgcaga aaagtccaca
    11401 aaatcaccca catagggcgt ttgtcccttc ttacgaaaat ttcctctggc tctggtttga
    11461 taaatctgtc catccgcctc gacatagtaa aaaccagcca aggccttgat aattcttcct
    11521 tgcaatgaag actcctttgt atgtgcttgc tactattata ccaaatttcc taggaaaaag
    11581 ggagcaaagc caaatcctgc acagctagta ttttcttgcc aatggaaata tatacaatag
    11641 aaaaagccct caaacgagag ctttcttggg atacatagat ggactagtct cttttgcgtg
    11701 atgtagcagc taatcccaga ccagaaagac cggacatgac gccccctaag actaggagca
    11761 tagagctgct atcacctgtt tttggcaagg ttttggcaac aggttgtgat acttcctctg
    11821 gtttaacagc aggagtgctt ggagcggact tgtctaccgt tttcttatca gttgctgtca
    11881 ctgcttgaac cttgccagct gtctgatcag ttaaggacga ggcatctgtt agctgttcaa
    11941 ctggtttgtc tgttggagtt tccgcaggtt tttcagttgg ttgttcaact ggctgttcgg
    12001 ctggttgctc agctggttgt tcggctggtt gttcaactgg ttgttcagtt ggttgttcga
    12061 ctggggtttc tggagcggcg tccttaatca tccagaattg aacccatgca aaaccagcag
    12121 agtttagttg ctttaaggca ttatcatagg taagttcata ggttggacta gtatattggt
    12181 ccaacttgta tccatcaacc ttgggtgttt ctaccgtctt tgtttctccc gggttgatgg
    12241 taacatagta atgagataat ggaccatcaa cttctgaaat tgcacctatt agtaccgaaa
    12301 ttgatttttc aactggctgg tcagctgggg ttgcaactgg ttgttcagtt ggttgttcga
    12361 ctggtagggt ttccactggc tttctagtcc aatatacctt taccacgcta ccaatactat
    12421 ccaggtcttc ttttgtcacc acggaaacat taggcagatt tgaggtgaat ccacctaatt
    12481 cttcgcgtgg ccactcttta ccaggaaatt cttcactata tggctctaac ctaacatatg
    12541 gccaacctga gttatagcct cgatttgcaa caccccagta ttctccatcg atatagaatt
    12601 cgactacata aggttcaaat actgcaccgt cttgagcgta cacaacagca gaaccgccca
    12661 gcaactgatt gcccacaggg gcaattgcac cgcccaaaac aagggtagaa gtaagggcaa
    12721 ggccccattt agcaaatttt tttacctgca ttctattttc ccaaggtctt atcgaccttt
    12781 cctttctttt tcaccttata atcccctgct acaatagggt ttgtacctgt tttagttaag
    12841 ggtcgttaac taaaacatag aaaaatcaaa aaaatgccaa cttgataagg cttgaaaagc
    12901 ccgtcaaatc agcattttga atattttcta ttgacaactt tgattgtttt accaaacgac
    12961 cgtctgctaa aacacatata ttcgcttaca gtttatcatt ttctcctgtt tctgtcaaag
    13021 aattatgtgc tttttgacga cgaaatggga tattatttcg ttttaagacc tgatagatgg
    13081 ttgctgttga aatattgagt tggttgacca tgtctcgaac ggttgtttct tctaccacat
    13141 agctctgaat cacttgtttt tcctttgatt ttgaaatacc cttattgccc aattttacac
    13201 cacgttctct ggccttacgc agtccgtctt ttgtacggtc agaaatggct tggagttccc
    13261 attctgccac atagcctagc atgaggcaga agaatcgacc tgttagcgag tctgtttcga
    13321 tttgttcgtg gatagattgc aggcggatct gatggctggt caagtctgag atgatagcag
    13381 acagatggag catctttctg gttaggcggt ctagcttata gactacaaaa ctggtctcta
    13441 taccgctttc agcacaggct ttggctagcc tgatagcttt ttgaagttgt gggcggtctt
    13501 gatgacctcc cgattccttt tccatgtaga gtctgtcaca gaagtgtagg gcttcttttt
    13561 gaacttctag ccccagttct tgccgattgt ccctcgaact cacacgggcg tagccaatga
    13621 caacagaccc tttttcttgg tattgcttga tgattttctt catattttcc tccttgttct
    13681 actattgtag cgggggttgg tataaaaggt ctgatgaaca tgtgatcatg gtttgataat
    13741 cattccattt tcccctagcc aagtcaagaa aaaaatagta taataaaaaa caagcggagg
    13801 tggtggaacg gcagacacgc atgcttcagg cgcatgtgcc catcgggtgt gagggttcaa
    13861 atcccttcct ccgcatgata aacgagaaac cccaagtcag aattattggc ttggggtgat
    13921 actttatgct agttatttgg cttcaaatca tttaagtaat gttatccagt tttgctttga
    13981 atgcaagata cgggctacaa aaacctgata gccctctatg aaataaaaaa cgagataatg
    14041 ttctatcggc atataacggt aggactttcc atcggcagtt aggttgccaa atcctctgct
    14101 agataccaag ggacaggctt cagggaatag ctctaacatt tccaaagccg tcaatatcaa
    14161 atcaattttg ctatccgctg cttgttggct gtaaaaattg agctgaatgt aatcatatat
    14221 agcctgcaaa tcctgtttgg ctctatcaga aataacaagc tcatattttt tcttatcagt
    14281 caagaccaaa ttcctttctg acagccacga gagaacttgt cttacctgct agaatatcct
    14341 gatgccctaa caagatttct ttctttaact cttcaaaagc aatcttgttg ctatcctccc
    14401 tactgtcttt tgtaacaaat tcttgggcat caatagtacc tgtcgcaatt tttctcaagg
    14461 tcgcattcag cacatctgaa actgtcatgc tttctccagc taatagctcc tttgtctgct
    14521 gataataaaa tgaatctgcc ctaaagttta cctgttgtgt tgctcccatt attcccaact
    14581 cctttgtata gacgttttgt acatacagtt tacccctttt tcagaagttg gtcaagatat
    14641 tcgctaaatg ggagtgggaa agaactcgac cattcataga agagttcgtc ttcccacccc
    14701 cgcacagttg attaggtcag atttggagtg taaaacacga acaaatctgc caatcaacca
    14761 ctgcgctgag atgttgacac taactttgag aagcggtgct gggctttttg ctcaacctca
    14821 tttttatatc ttctcacaca atttcccatc acgcatttcc aaaaccacat caaacatgtc
    14881 taggatggca gagtctgatt catgcaagat ggtgatgata agtttgtcct ccagctgcaa
    14941 gaggttggtc aaaacctgct tggtcagggc agggtctaaa tgggcggtcg gttcatccaa
    15001 gagtaagatc tccttaccac tcatcaaggc acggagtagg cacaggacat ttttctcgcc
    15061 tccactcaag agactggggt ctgttgttgt acgcaaggtg tcctgtaaac tcgttggcaa
    15121 gctccttaac aagccaagca tgacatctct tcccttttca taggttccca aaacagacac
    15181 attgctttca aaatcggtat ggtaaagatg ctcaaactgg ttgagagaga aggcggtagc
    15241 tgtttccatt tcatgcaaaa catcgttttc cagataggaa acacttccct tatccagagc
    15301 cagttctcct gccaacactc gtaaaaaagt ggattttccg ctggctgacg gaccaatgat
    15361 ggcatacttt ttccccttgt caaaccgata ggaaacatct gctaccgcta attctcccac
    15421 atgataggcc acatccctga cttccaaggc tgtcaccttg ggataacttg gcacttgttc
    15481 agacaagacc tgaccagcaa gatagccttc taaattggca accgtttcct tggtcgaatg
    15541 gatataattg acatccaaga ggatgtattt cataggatag atgaaatttt caacatagct
    15601 aaaagtcgca atggcagctc caatggtcaa ctctttttgt agcaagaggt agccgaccaa
    15661 gccaaaagcc gttaattgca ccaaaaacat ggagaagcca ttgacaacat tggctagggt
    15721 cttgaattgc ccaaagcgaa aacgagcctg ctcactttct tctactgacc gatgatggac
    15781 acggctgatg gagccgaaag tttcggtatt gacacgattc ttggcagaaa agaggtcagt
    15841 caccacctga aaatagcttt ccaaactctg taaaaatgcc cgctgacgct gagaaagagg
    15901 accagaaatc cacttgggaa tgaagaccgc caaggcagac gatagaataa tccctaccgc
    15961 aaccagggga tgaacaaaga gaaagaggga aaccgcatag atgaccatgc tcaagctaga
    16021 gcggataatg tccatgagag gactcaggta actctcctca atggtttcca aatcgttgtc
    16081 aaaaatggat agataggcag agacattctt ctctgaaaat ttggctaaag gctgtgataa
    16141 caagctgttt gccagacctt ttttagccgt gacatagaaa ccctgagaca ccttccactc
    16201 ataaacctgg gaaatgtact gaaagactga attggcaatg atggtcaaag cgtaggccaa
    16261 caagagccag acaagtcctg tccagcccat ctgaaaaata tggtcaaaaa gatacttatt
    16321 taactcaggt aatacgacat tggtcaaact atataagata tggaaaacca actgaatggc
    16381 aataacagac ctcaattgat agatgatttt tttcataact cctcctagaa taggaacaat
    16441 ctgacaaaaa ttaattactc tccccaatcc gtaccacccc atcataacga gaaaggacat
    16501 catcggacac gcggtgggaa atatggatga gcgtcttatc agctagtgag gtaaggtagg
    16561 cttcaattac tgtataggtt tcctgatcca aggcagacag actttcatcc agcaacaaga
    16621 tatccttatc ttgcagcaag gcacggatca agagcaggcg ttgcttttgt ccgccagaca
    16681 gtccgctatc atcactaatt tcctcgctca aagaagtata acttggaaaa cgactgtcaa
    16741 gattcatggt cttaatgagc gacatcaacc tatcttctga aacatcctgt cccatggtca
    16801 agttgtaaag aaccgtatca tgaaaaaggg ctccctcttg tggcagatag gcaatcttgt
    16861 cttgaatggc ttggtaggat aagtctgaaa gagaggtttt atcaaagtaa atatccccta
    16921 cttgcagttg gctattcttg gtcaaaataa gagccaagga agatttgcca gaaccacttt
    16981 ccccaagaat taaatacttc ttgccacgtt caaacgctac ggtcaggtct tcaaagacct
    17041 gcttctcacc gatggcataa ctagccttga ccagttgcat gctctggaaa gctgaagcta
    17101 gttcctgtcc cttcgtttct tgacccaaag tagatagctc aaactctttc ttcaattcct
    17161 taacggcatg cctgtccaaa aaggctgcgg caatgctgtt aatgggatcc accaactgct
    17221 ctgaaatggt caaaatagcc gtcaaacctc cgatggtcaa ggcgccagaa aaaacctgaa
    17281 aaccaccgat gaaaataatc gaaagagtgg tcagataaaa gacaaaaccg actaagagcc
    17341 gcatggttac tgtcgttcga ttggcctgat tgaccttgtc attgactgct tgatagcgat
    17401 cgttcagacc atctaaaact tgctgtcttt ggcggctatt tttcacttgc aaataactca
    17461 gaaagacatc tgaaaccctt gtattataga cctgctgact gtccgaaatc gcctcctgat
    17521 tgagccttct tcgcttttta aacaaatagg gaatcacaac tggcaagaat gagatcagaa
    17581 tcaagaaaat agctgtcaga ccatccaagc taagaagggc caaactggca atgccaaagg
    17641 tacaagcacc ttgaaaaatc gtaaagaaag cgtcgtaata atcttctttc accgtctcca
    17701 aatcattatt gagctgagaa atataggctc ctgccccctg ctcaacaaac tgcctaaaag
    17761 gtaaatcaaa cattttccca ataaaggtcg cctgcaattg gaaacctact tgattgagat
    17821 agctgacatt ggcaatctga cgaatgtatt caaagatcag catgacaagg acagttagcc
    17881 ccatcagcac aaaataagac acaaaggctt gtctatctcc agctgcaata gcatcaataa
    17941 tgtagcgata ttggtacaga aagccaacat tgagcagggc tactgcaaaa atacaagtta
    18001 aggttagcca aaaattcctc tttttcattt cccctccatc gtttgataga tttctaagca
    18061 aacatttggt cgctttcatc tatattatag aataggaatt ggagacgatt ttattcgtcc
    18121 cctatatgca actatttctc gttcgctatt ttttcaagta tcgtttcata ccaatctgct
    18181 atattctggc tatcgaccgc tcgtaaaagt tcgatacact ttctcatctc caagatagca
    18241 ttggcacttc ctgtttttcg ataatcataa aaagtcttac caaatttaaa taaaatgcgt
    18301 tcaaaaattt ccgtttcatc gaaaaacaga cctttgatgg tcttttcaag aaagattgcg
    18361 tcggcaagtt ccttatgttg aacgctgacg agataggcac taagtaaaat ttgagaaact
    18421 gccaatcgat gtagtttcat ttcacgataa aactgtgtac gaccaattag ttccctgcaa
    18481 aaaagcatca tagtctggtg ttctaattca tccatggtat tggcaaatag caagagctcg
    18541 taataactcc agttgtccac tcgaaataag taatccgtta aaaaggctgt atcttctttc
    18601 gaaacaacta ctgtcttatc taagtcgctc agtttatacg cgattaaaat agcattcaac
    18661 cgatgaaact ccctacgaga atctctttct gcttttgcta attgttcaga caagattttc
    18721 tttatggtta caacatctct gatatagatg gattgtttta gttgttccaa aattctagtc
    18781 agctcatctt ttttgaaatc ctgactggca tacacgaact cgtccacatc cacattcatt
    18841 tctgccagca caccaaataa tttactaaca gtaatgtcgg attctccatt ttcaaaccga
    18901 gaaagttgag aagtagaaat atgtcccttg gcgacctccg ccaaactctt cccctttccc
    18961 tctcttatca attttaatgt cctaccaaaa cgattcatac ttcacctcta cactcacgat
    19021 taaaaaatca tttgtaaaca taattattat accacaactt cccatgtttg tgtgtgtttt
    19081 cacataaaga agaaaccaag ccagctatct gacttggtct atttttattc tgtcgtttca
    19141 gtcgctactt tgaaaaaatc tttgtatttc aaaaggtagc ctttccctgt ggataggtca
    19201 tattggacca gtttgagctc ttctgcaact ttcgcatctc gctcagcctg tcctactcgg
    19261 tccttatgaa gcacttctgt caatagggca tagtaaggac tgaccttgtt gttggtcgtc
    19321 tccagcatca gtgcattcat gtcgctagaa ttgaccaaat cataatggta gtcttctgtt
    19381 tcaaaattac tccacacgaa ataatctgtc ttatactgcg cgcttgggtc cgtcacgaaa
    19441 gcagactctg gatacaaacc tggtaggtgg tcaccgtaaa aaacaactgt cactttctta
    19501 tccaaggtct taagctggtc tagaaaatcc cttgttgcct gatccgtaaa ggataggagg
    19561 cgaacatagc tggtcaagtt ttcattttcc tcagccgtga agccctcacc cgatgctgta
    19621 atacttgcag gctcagctga gttccactgc acatggttct gcatggtaat agccgacaca
    19681 aagctggtat cagcagaacg cacctgatcc aaaatcaagt cataggtctt cttgtcactg
    19741 acaaaattcc cctgataatc ctcagccgtc acagtaagag gatacttggc actattgaga
    19801 gtgtagaatt gctcaatccc cagctgctta tagatagaat ttcggttgta actggtatcg
    19861 tagtaaggat ggatggcgat acgattatct gctggataga ggtcgctgat acttggcaac
    19921 ttcttcatat tcggtgctac atccagatag actgacgaaa tagaagaatt ataattgtaa
    19981 aatggcaaac cactataaac ctgaaactca atattggcag tcccaccacc atagtggtca
    20041 ctcttcatca agccactggt agtctgactc atgatgtact caatatttgg aaggacattc
    20101 tgactaaggg ttacgcctgg aatccgacgc gggtcagcca aactctcact aagaatgtag
    20161 attaccgtct ggtcagtcaa ttgacctgtc cgttctgcat tgatttcctc agccaaggcg
    20221 gtgtacttct tcacaatagc tttcatggtc ttctcagagt aattctcagg catttccata
    20281 ctggtcttgc tgagttgctg caaccagagg aatgaaagag tgcgataacg agccacaaag
    20341 gcgtagccct tccagtctac gttacgccag ttattgacct gagaaagaat aggaatccag
    20401 ccagcaatct tatgctcttt ttcattgcga atcgcccaac ccattcctaa aatcaaggat
    20461 acgataactg aaactcctgc cagccgtttc cagatagaag cgacaatcct tccttggaag
    20521 tacttcttgt gaatacgtcg gtagataaac acaaggagga ctataaagac gagcgatacc
    20581 aagacaacac gtagactgat gaagctgaga atcatcccca agttcccgac ccacttgaaa
    20641 tcattggggg tcaatggctc cgaacgatag cggaatttta ggaaattagc cgctatcaag
    20701 gtcacattta gaccagcaat gacagcaacc gacaagattt gacggttgat gaccaagcta
    20761 atgatgacat tgaggaaaaa gaggcaggca atttggaaga caatagcccc tggaaagagg
    20821 tggcgtgtga aataagaacc cgttccccca gccatcgaag cctgataacc aatatgcgat
    20881 agcgtagcca gtgccaaact gataaagagc atgctgtgaa cgttggtccg attggcctta
    20941 aactctacaa atgccttatg aagatagcga agaaaaatgt aagtccctat aaaatgaata
    21001 ggtgcaaaca gcggtgtctg gctgaaaaac tctatataag aacctttctc aaccaaactc
    21061 tcataatgac tatctttcca gtaagatata gcgagtggac tgagagaaag caaactggtc
    21121 aagaacaaat agccatctgg taccaagtga ttggctgacc actggcttaa tttttctcga
    21181 attcccgtct tcttccgcca caaaaatgcc aacaatacgg gaagaagcaa catcaataga
    21241 agttcaaatt gaaagagatt attccggaaa atattccagg gttgatactt cttggcattg
    21301 agccgataga ccaggttgac aagatataga aaacctagaa aatagccgac atacttggca
    21361 aaggttttgg tctttacaaa cttctcgtat gtatcaagca agaccaagat ataaaacgta
    21421 aaaatagaat aggcaagcaa gggcagagga ataaaccaga gcggaaaaga tacaccgctt
    21481 aacaaaaggg cccgccccat cgccagcaaa atggtcataa tcatgactag aataaattgc
    21541 ttgcttgcct tgggattgat ttgtttcata acatttctct cttaggaaag atttgatttt
    21601 cgataggcaa agatatagta aatcaaccag agtagccatc cagtcaaact aataatgata
    21661 actggcgata accaccactg ttgcttgtag gataggacaa gggtattctg cccttttttg
    21721 ctggtaaccg ttggtacacc aatagtggaa agctccattt cttccctatc caagacctgg
    21781 tcattcaaaa caagctgact atcttggtag acaatgattg gcagggctat ttcttctgct
    21841 tccgacgccg tccaagtcac caccagctga ttgccgtcaa cttctttggt gaactcttga
    21901 tttggtaaaa tcacctggtc acgataggta aagtaggtat tatccgactc ttcattggtg
    21961 atgtgacctg tgctatctga caagtctggt acgtagtctg gcgtggattt ctgagcaatg
    22021 tggataaatt cgcccaagtc tttagaatag aaagaagcac gtaactcttc cgtcgtcccg
    22081 tacaaggtcg tatgaattcg tttttgtagg aaggtatcgc tatagtaatg tcccttgatt
    22141 tccttataac tttcattcca gaggaaacca accgaaacaa gcaaagaaat aacagtcaaa
    22201 ccagaaaaga ttttctgcat tttttctgac aaaccagaaa cctgtacccc cacaactgcc
    22261 agtaaaagag cattggcata gaggaagaag cgaaatggaa attgaatcaa ttcgacaagt
    22321 gtaattcctt tacctgcaaa caactgccaa gggaagaggt tggttgacaa gattaaaaat
    22381 actgcgtagg tcaaagcaag accacccaga accagcgatt gtttcttcca atttttcacc
    22441 aagaaataga gatagattcc aaagaaaatt ggcaatggat atggatagta tagaaaggct
    22501 gttttgagcc atgttacggt attgaagaca aatttcttgt taacaaatgg tggcaccaag
    22561 gtgttggtcg cattgatata aacaagcggc aaccaaatat tgatggtcag aagcaagaaa
    22621 attcctaccg atagagctac ttgcccaata atcttcattt ttgagtctga tttccaccaa
    22681 ccaataagga agagaacacc ataggcaatg accaagaaca aggttgatag catatgaacc
    22741 tgtaacatga gccctaccgc tcctgccatg aggaatatcg gtactttttt agtctgtaag
    22801 aaacgaaccg caggaatcaa acaaagcgga aagagagcca ctccccagct ggtaaatcct
    22861 tgggtcgccc accaatactg aatggagtag gtcgtcacaa agaagaggga caagagaata
    22921 gaatgagtat atttgacctt gacctcgcgc atgagcaggt agagggaggt ggcactcaga
    22981 gtacccaaga gaagattgga taaaatctga tagcggaacc aggtcccact taagagtacc
    23041 aaggccccct gtagataggc aaaataaggc ccatagagag cattgacaat ccgtcctgac
    23101 tgctgatagc catacaaact gataatatag gagaaattgc cctccttcat ctgcatagcc
    23161 gcatcataga aacgattgta gtggaaaatc aagtccgcac ctgtcaccat gcccttagtt
    23221 agcaagtggg gaaccaataa taataaagaa aagcccacaa ataggcccag ggctactaaa
    23281 tggggatgct ttttcagcat agttttcaac atatagatac cttcataaaa aaagagggaa
    23341 accctctatt gtttttgtaa atattctgcc aatttgcaga caatattttt caaaagttag
    23401 tcacatttca gtatagcaag ctttctcaca actgtcaacg aacaaggaag gcgggaaagt
    23461 gatttatcat aaaataaata ttgattgcag atttctccgc aatcaatact tgcttataaa
    23521 ccaacttcct ggaggctgtc agatagacgc gcgaagtcag ccatggaaag tgcttctcca
    23581 cggacactag cttccagctc tgccatgcca agtgcctgcg tcagcttgtc cttgacctcg
    23641 tcggacttac caaaatggtt ggtcaggttg ttccacaggg tcttgcggcg gtgaacaaag
    23701 ctggccttgg acacccggaa gaagaaatcc tcgtccttga cactcaccaa gggttgctcg
    23761 cggcgaacca ttttaagaat ggcggagtcc acgtttggag cgggcacaaa gactgtgcga
    23821 ggcacgatga aggccacatt ggcagtcatg tagtactgga ctgcaatgga cagactgccg
    23881 taagccttgg tgtttggctc ggcagaaatg cggtcggcca cctctcgctg catcatgacc
    23941 acgaactcgc tgaaaggaat cttgctctca atcaggtgca tgaggatagg ggtggtgatg
    24001 tagtagggca ggttggccac gaccttgatg ggcaggtcag gattcttgaa attctgaatc
    24061 tgggtctgca ggtcggtctt caagatgtct tggttgacca cggtcacatt gtcaaagcga
    24121 cccaaggtgt ccgccaaaat cggaatcagg cggtcgtcaa tctcaaaagc catgacctcg
    24181 gcagcatttt ccgccaaaaa ctcggtcaaa gctccgattc caggaccgat ttcgatgaca
    24241 ttgacattct gatcaatctc agccgtgtcc acaattttct gtaaaatatt ggtatcggtc
    24301 aaaaagttct gaccgaaaga tttcttaaag gtaaacccgt ggcgttccag gacggcacga
    24361 gtaacgtttt tgtctgcgat tctcatgtgt gttctttctt gtttttattt cgccatttca
    24421 cttaatcgtg aaacaacact taactttctc atagtggctg taatgcccaa ctgtttctct
    24481 aaataattgg tatttagttt tttctttcga gcatctctcg gaagatacat gtatagacat
    24541 tgacttccca gacgcaactc ctcatcgcca aagtcttggt gcaataattt gtttaatttt
    24601 tcaccattta tctcatcatt ggtaaagacc aaatgaacac gagaaggatc atagccctca
    24661 ccaaaaggat tttcagcaac tgcttgtgtt aactccatct gatgtttgac aatgatcgct
    24721 aactctgcac ctattttttt ctttaatggt ttgatggata agccgactga gttgtttatc
    24781 tgataaatca gtttcacaaa caacatttcc gctttgaata taggtttgaa cagaagtcaa
    24841 gccaacttct atcagtattt ctgctaagta agacatcttg ggaattttat tcttgccaac
    24901 aggggtaacg ccacgtaaaa gagcaacttt tttcatttgt taatccccct cacccataat
    24961 gatcctttaa agacaaaata tacagcttat ctgcttctac catataaata aaccgattct
    25021 ccgcatcaat ccgtctcgac caggctcctt gataatcata cttcaaaggt tctggcttgg
    25081 caatgccttc aaaaggatgt cgttgcatat ccttgataat cttattgatt cgcttgagtg
    25141 ttttcttatc ctgaccctgc caataaagat agtcttccca ggcatcctct gtgaaatgga
    25201 ttcccatgtt agtccgcctc tatcagattg cgttcttggg tttgtcccgc tttgacttga
    25261 gccataccac gcaaaacttt ttgagacaga taagcgttcc gagcaacagc aagggtttct
    25321 tgtaagctat cccactcact ctttgacagt acaacaatat cttcctctgg atttttatta
    25381 accacgacca aaggctcaaa ctcgtcattg acctttttca tgtagtcctt taagtgattt
    25441 cgaaaatggg aatatacaat agcttccata tgcaatacct ctcattattt ctaggcttac
    25501 tatagcatag aaaaaaagag ttgtcaaact tattgtacaa ctctttagcg attctccacc
    25561 ttccactcac cgtcttcaaa ccagtaaaaa ttctccgtca gctgtggctg ttcaaagatt
    25621 tccaacatag cttcaaaacc gtctgccagc tgaacattct tcaggtccgc acgatcaatc
    25681 cagaagacct ctccctcatc tgaagattgg atagagcctg aaaaatggct ggttttgtag
    25741 caaaatacca gataacgata gtggtcagtc ggatccgtcc agttttgaat gccacagagt
    25801 tcgagattgg atacagttaa acccgtttct tccttgattt cacgaatgac agagacaata
    25861 agcgactcat ttggctcgat atgccctcca ggaaatgtga ttcccggcca cttctctgac
    25921 ttcctatcct ggaccaacac ccgctgaccg tctgtaatca tgcacatatt ggttaggatg
    25981 acttgctctg tcctactcat gctctctcac ttcaacaact tcacataatc actcttggtc
    26041 gcaaagagat gaccaactcg cacttctttt tcgaccacac gatagagggc gatgtagtct
    26101 tttccaataa cgtaacctcg ggttagatgt gacgggtcta tctgcttacc aaaacggtta
    26161 tcggcgttaa aaccacgttc aggaaaaatt tgcaaactct ccaaagcttg gacaatcatc
    26221 tcaattcgtc ttttggcaat ttcttctgag aactgtgccg agaaataggc gtaaataact
    26281 gccaattcct tctccactgc tggagcaagt atcactgaat aagactcaaa tttcatactt
    26341 ctctttgaca cgctctaggc tgatcccgtg acctgcctca atcgcctgtt ggttttcctg
    26401 gatttccttt tgaagttgta aaaacaactc ttctctttcc aactcttctt cagtcagaat
    26461 gggcaactca ttttttacag caatgttttg caagaagaga ttgaagccag cagtcaaatc
    26521 cagctggttc acagcaaata cttccttggc tttttctaaa agtctggaat cagttttaaa
    26581 atttacttgg gcatcttttt ttatagttat caagctagtc caccccctag ttttctatat
    26641 tgtaacacga atagatatca gtagcaatct tcaaaaaagc agaaatagta acatttccgc
    26701 tctagattgt ctatctcccc aaatcatcaa aataatagag attcaaaaat tcttcctcag
    26761 taactagacg ttcaaaattg taaaaccagc gatagacttc cacggctggg ccatcaaact
    26821 ctaccctgtc gtccatttct tgcacaccgg caatatgaaa caaacggctc tgcttccaaa
    26881 tcccatccgc attgacatag ccatcttcaa ctaaaccacg caaatagtct gctagtttgt
    26941 tcttatcaac ctgctcatcc tcccaaacaa ggacatcagc cggcagcaag taggtcactt
    27001 cttcataaga tgaataattt tcataagaag gttcaaactc gtttttaacc aagcacttaa
    27061 caacgtagac tctatccatg atagctcccc atagcctctt ccacttccac caaacttatc
    27121 ccaaacagtt ccaagcgttt gaggagttgc ttaccgttgc agtagccgat acggagctgt
    27181 tctcccagat actccctccg cctgcggctg tcgccaccca taaggagtcc taggcgcatc
    27241 aggtctgact tgctgatatc aaagttatgt tcatcatcat agtagccacg cacgcctgct
    27301 agggcctttt ccaagtcctc aaagctggcg tgctcaatgc ccaaggaccg cccttttgtc
    27361 ttggacttag gtgtagcctc gtcccgctgt aaaaaagcgt gtttgaccgt gggaatggcc
    27421 tgcataatga ttttccgaat ccgctcacca ttgtagtctg ggtcagtaaa gacaatgacg
    27481 ccacgcaggt catggagttt ctcgatgcgt tccaagtcat cgtctgatat ggcagagcct
    27541 ctggtttcgt aggtatccac ctcgtaaaac cgcttcaagt ttaccgtatc atccttgccc
    27601 tcgacaacga ggacttcttg tatcttaatt ttctgagtca attctgaaca aactccttgc
    27661 attctcgtag gtcgctctcg ccacctcttc gaccgactgg ttgcgaagct gggccagcat
    27721 atccaccaca tatctggtgt agccggtgcg attttcccga ccacgcttgg gaacaggcgc
    27781 taagtagggc gcatccgtct cgaccaagat tttttctagg ggcaatgctt gcgccgcttc
    27841 ctgaagttca acggcttttt tgaaggtcac tactcccgag aaggagatgt gcatacccaa
    27901 gtccatgaag gcctgagcct cctccagcgt gccagagaag gaatgcatga tgcctccgcg
    27961 tggaccgacg ccgacttcct tgatgatctg gtaagtatct tccaaggcat cacgagtgtg
    28021 aaccacaaag ggcaaatcca actgcttggc tagctccatc tgtcgcttga aaacacgggc
    28081 ctgggtttcc ttatctgccg tcatccagta gtaatccagt ccaatctcgc ccaacgcaat
    28141 gaccttagga tgtttgagtg cctcaagcaa gtagctttct acttcctcgt cataggtgcc
    28201 agcctctgtc ggatgccagc ccagtgtcag atagatttcg ggatgctgat ctgctagttc
    28261 catagccttg tcaatggttg ttcggtcaaa accgaccaca ttgtggaggg tgacccccat
    28321 ctccttggca aagtctaatt cttcttggac ccgaccgtca aactgctcga cgttgaggtg
    28381 ggtgtgagta tcaaaaattt ctatcatggt tctattgtac catatttcaa gctattcttt
    28441 tccaacgaaa aaaccagcag actcgagttt ctgctggttt tagttgtatt cttatgctac
    28501 tgtaagaact ttacgtccct tacggcgacg agctgctaac acgcgacggc cgtttttagt
    28561 tgccatacgg ctacggaaac cgtgtttacg tgcgcgacgg attttacttg gttgaaaagt
    28621 acgtttcacg atgaatacct cctcttagat tcttgtattc gtttagccgg ctagttttga
    28681 tcagttacta aacataccaa actattttat ataaattctg ggtttttgtc aagctactta
    28741 acaattattt ttta
//
LOCUS       DASGAC010000007        28159 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.007, whole genome shotgun sequence.
ACCESSION   DASGAC010000007 DASGAC010000000
VERSION     DASGAC010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 28159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28159
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.007"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            57..281
                     /locus_tag="U1335_000259"
     CDS             57..281
                     /locus_tag="U1335_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000064028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF739 family protein"
                     /protein_id="HEM5230774.1"
                     /translation="MAFDYSKLSGRIIEIFNSQQKFAKAMNLSERTISLKLNNQRFWK
                     NNEIAKACSLLKIPDNEVGEYFFKHKVQET"
     gene            306..1016
                     /locus_tag="U1335_000260"
     CDS             306..1016
                     /locus_tag="U1335_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001002368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6C domain-containing protein"
                     /protein_id="HEM5230775.1"
                     /translation="MNEIFVFHGQEVRTVTINNEPWFVGKDVADILGYSKSRNAIALH
                     VDEDDALKQGITDNLGRMQETIIINESGLYSLILSSKLPQAKEFKRWVTSEVLPQIRQ
                     QGAYLPENLSDEAFIALFTGQKKLKEQQLALAQDVDYLKNEQPIHPSFAQALLKKRKA
                     RVVACLGGMDSPAYADKVFAQSVFRQAEVDFKDHFNINRYDMLPKKFADAALSYWMTW
                     EPSTNTKMKILEMNAYEL"
     gene            1077..1361
                     /locus_tag="U1335_000261"
     CDS             1077..1361
                     /locus_tag="U1335_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000998974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEM5230776.1"
                     /translation="MNDLMIQMLDQFEAGLMDRALKVMHVVMDEKRRYPMELNKSQCA
                     EMLLGTKDTGSFDARFNCHKDFPRIPNAREKYPRDAVIEWYHDNWQRTAI"
     gene            1358..1546
                     /locus_tag="U1335_000262"
     CDS             1358..1546
                     /locus_tag="U1335_000262"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230777.1"
                     /translation="MTEELMLTAEQGLAFIAILTPILIWLIRKPVEIEIEVKEPVIEE
                     KQPERNLRYLQIHRYHGG"
     gene            1548..1802
                     /locus_tag="U1335_000263"
     CDS             1548..1802
                     /locus_tag="U1335_000263"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230778.1"
                     /translation="MKFLETLKKFMSFEEDDYIPQNKHELERELSNARHTAMEYKKLA
                     LLKNQECVGQARLIDQLNRRIEFLENVNKCQAELLADREV"
     gene            1805..1960
                     /locus_tag="U1335_000264"
     CDS             1805..1960
                     /locus_tag="U1335_000264"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230779.1"
                     /translation="MVWVVAKKNKRGRRKYHYKRSFDTWQEARVYQQDLWNKGITAEM
                     REEKDDE"
     gene            1953..2132
                     /locus_tag="U1335_000265"
     CDS             1953..2132
                     /locus_tag="U1335_000265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230780.1"
                     /translation="MNRQSTLNYIFTGIIFLLIIMSIGILYRTEQLQDQVDSLQGQVN
                     TYRTLIFNLYGENGG"
     gene            2135..2422
                     /locus_tag="U1335_000266"
     CDS             2135..2422
                     /locus_tag="U1335_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001097109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230781.1"
                     /translation="MAKDFMLQLALESLSKCLSKEWRESDEVILFSLANKDQITQDER
                     YRETEKCNYYGKRICIFASQVKKNNYITLHKSMLTNIVDIMEKNSNQKVEG"
     gene            2426..2755
                     /locus_tag="U1335_000267"
     CDS             2426..2755
                     /locus_tag="U1335_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001811467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230782.1"
                     /translation="MEKLKNMYRGVYGWTVQNDKPSPPAHDLPSVVKDRVDYFWDMAE
                     DGMTFMGAMECIFANQKPEDYDLGATKDWLPMSQEFKDWVGHAYGMAQMEIAVYMIYG
                     NPQEIEK"
     gene            2752..4086
                     /gene="dnaB"
                     /locus_tag="U1335_000268"
     CDS             2752..4086
                     /gene="dnaB"
                     /locus_tag="U1335_000268"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011017360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEM5230783.1"
                     /translation="MNDLRIPPQDILAEQAVLGSIFISPEKIVTVSEYLTPVDFFRPS
                     HQILFKAMLEIYERGEAIDAVTIKGYLESQGSLSGVGGLPYIAEVVNSTPTSQHVEGY
                     AKIVASKSKARTVIAELTDAIQSAYDDALSIDDVIAKTEQTLVSVNNSKSKGSFQPIS
                     QVILGNFDTIEERASRSSDVTGLPTGFRDLDKATTGLHKGNLIVLAARPAMGKTAFAL
                     NIAQNVATQSDLPVAVFSLEMRAEALVERMLAAEGPVKSQSIRTGQLSRDEWERLVYA
                     QGQLYNAPIYIHDTPGIKISEIRSQCRKLASDVGGLGLIVIDYLQLITGSRSENRQQE
                     VSDISRQLKVIAMELNVPVIALSQLSRGVEQRQNKRPMLSDLRESGSIEQDADIVAFL
                     HRESYYTKHEQGQPENNITELILEKNRHGKLTTIQLYFHKEYVKFSDVEERK"
     gene            4083..4844
                     /locus_tag="U1335_000269"
     CDS             4083..4844
                     /locus_tag="U1335_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011017361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conserved phage C-terminal domain-containing
                     protein"
                     /protein_id="HEM5230784.1"
                     /translation="MIKKTDVVGFLSFFKFPKPFIYDEKYKSLSNNAKLMYMLLFDRL
                     ELSVKNGWHDSEGNVFQYYTNDQLMIDLNCNSNKTIIKIKKELKDAGLLSEVRQGMNL
                     PNRIYLEVLSGSVENTLSEVQKIHTGSVENTLSEVQKVHTIKTENNKTDKNNNIDIIT
                     EVIAYLNQVAGTRFAFSSQATQRHINARLKEGYTLEDFKYVIDIKVSEWKGTDFAKYL
                     RPTTLFGSKFENYVNQNSRQSRGTFANAIDERLGF"
     gene            4844..5665
                     /locus_tag="U1335_000270"
     CDS             4844..5665
                     /locus_tag="U1335_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001067869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEM5230785.1"
                     /translation="MNFNEFRNRQVLDDTCEVHGCQLWSYHIVINGRREQTVTCPECT
                     KAAISNFEKELQRQSEINSKLADTYSVFERDSMVSTNLVNKSLDNYEIRSDIDPKAIN
                     YAKRIEEFYRLGKTGNSIVTGPSGVGKSHLTYGLAKWMNEQFKAYGNPKSVLFVSVVS
                     LFNKIEESFSVDNGYSKAKMVDLLTRVDYLFLDDLGKESRKDGNTAKNAWRHQVLYEI
                     LDNRSNTIFNTNLNSSEIKALYADDFGNGALSSRILAGVTGNSFKYPDDMEDRRY"
     gene            5818..6450
                     /locus_tag="U1335_000271"
     CDS             5818..6450
                     /locus_tag="U1335_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006155290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HEM5230786.1"
                     /translation="MNLADYGRLFGDNTLFDTLDKLPKPDLVIASPPCESWSNASVMN
                     EGNACWKQEDLSDSLFAPQREASMFTIRNKSDYEQAYINYQYDRQFMKRVNGELCAFN
                     TVEIIKRYNPRYFIIENPASGRLWKYIEDVMGFKLPYLNITRYNNYDYPLQKPTKFAS
                     NINLDLKNEIIKQEIEWGHFSKSYNERSNIPQKLVIEIFSKIYNEFSKEE"
     gene            6899..7075
                     /locus_tag="U1335_000272"
     CDS             6899..7075
                     /locus_tag="U1335_000272"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230787.1"
                     /translation="MNLNYRDLHIVKHAIQTHMARANPRDGDLEQEGRLLGRVTAEIE
                     ALKEKFNGNGCGCS"
     gene            7085..7510
                     /locus_tag="U1335_000273"
     CDS             7085..7510
                     /locus_tag="U1335_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230788.1"
                     /translation="MAKNIIGLDLSSIADGGLQEKLNNELARVIENILDPNTDPTVKR
                     EVSIKLVLKPNDQRNSVDTIMEVKSKLAPQVKLSTTILVGQNYETGEIHANELLSAMP
                     GQTFFDNDAVLRTDTGQPIDEIEKEDNPAIIDFKKKVGN"
     gene            7512..8246
                     /locus_tag="U1335_000274"
     CDS             7512..8246
                     /locus_tag="U1335_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002308025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230789.1"
                     /translation="MSEITRDALEYAVELHEMARETITSESGKEYYDANTHSYRELEP
                     KRYPAALNLRTLASLVDYLKSGLDELKKQRLIVLVEDPTTVCVYSENDELENRTKLVE
                     VVATLPHITLEQFMPQEAFIIQAQAGFVANEDRASMINFASHLEIKEASEVVDNGVSQ
                     VATVKNGVASLAKGIVPNPIQLAPYRTFTEVAQPESQFVFRINGRAQLALFEADGGAW
                     TLEAVNNVAAYLKDKLGEQEHLTILA"
     gene            8262..8657
                     /locus_tag="U1335_000275"
     CDS             8262..8657
                     /locus_tag="U1335_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018368360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230790.1"
                     /translation="MKNKIRLVLATIGLIGVLAGCERQADVVRHNLSEEADNFNVVRK
                     VTVLNAITNDVMFEMSGRMSIVADTTDNQLEILVETADEEYQKHIIGLSDNVSYVVQD
                     VKTKDVSAYDYTINFNPKMWLPLEVKTVD"
     gene            8786..9010
                     /locus_tag="U1335_000276"
     CDS             8786..9010
                     /locus_tag="U1335_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001042276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230791.1"
                     /translation="MNKRIRKKKAKQAELKKQQEIAELLEQLGQNPAALNKALHQIGV
                     AFSEVFNAIAVVSRKASQNFKDWSKQFDTT"
     gene            8997..9401
                     /locus_tag="U1335_000277"
     CDS             8997..9401
                     /locus_tag="U1335_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM5230792.1"
                     /translation="MTRLDKRELSRLDSELNKYRSIDRSIRNRQLELSARNSDDEMGI
                     RSGGVSKPTEAIVIKWDSDPTIRHLEAFKTLVEKLLDLLTDEDRELFHLRWQYPCLKW
                     EEIADKKFMSLATIYRRRAIILEQYAELKGHL"
     gene            9606..10154
                     /locus_tag="U1335_000278"
     CDS             9606..10154
                     /locus_tag="U1335_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEM5230793.1"
                     /translation="MNYVEPIRNTEDIDMMCDYLREWNERNYIMFLIGINTSLRISDI
                     VILKVSNIRGHYIIVIEKKTKKRKRIKMNSLLKREIERYIKGKKVGDYLFQSRKGKNR
                     PITRQAAYCIIKIAALDCGVENVGTHTMRKTFGYHYYKKHKDIAMLMDLFNHSSPAIT
                     KRYIGINQDQQDRAFASFKLGK"
     gene            10604..10957
                     /locus_tag="U1335_000279"
     CDS             10604..10957
                     /locus_tag="U1335_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000282427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEM5230794.1"
                     /translation="MTFKPVRKTLKSSRWDKFRSRTLKRDKYLCQESLRYGVEVQAEM
                     VHHIYPVSEYPELEFTSWNVISLTNKIHGTFHDRKNDKVIGQGLYWQRKRKKEFEQFF
                     ESRKAPPHNKNSQSH"
     gene            11050..11415
                     /locus_tag="U1335_000280"
     CDS             11050..11415
                     /locus_tag="U1335_000280"
                     /inference="COORDINATES: protein motif:HMM:NF016975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P27 family phage terminase small subunit"
                     /protein_id="HEM5230795.1"
                     /translation="MARPITQNTFKNRTVKSMKEMRTYSKHYDDLIEIYSGLLYDYHI
                     AREEFIANGSQVTEEHETSRGTIVERKTPLVQTMENLRKDILTYSDRLQLNPKAANVE
                     VIKPDKEAGGLEGLIANLT"
     gene            11412..13151
                     /locus_tag="U1335_000281"
     CDS             11412..13151
                     /locus_tag="U1335_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010905711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HEM5230796.1"
                     /translation="MTRTQKILTDFQIAKQYAEDVVAGTIIAGKRRAKACARFLKDLA
                     SGKFDFRSEQFEFVIKFIEGLVVHRKGESLEGKPLTNVPFILQDWQKFCIVNLFGFFK
                     KGTSIRRFTEALFMLPRKNGKTPFASAICLAMSVLENKSGTNAYILANSLKQTRESFD
                     FISHTVKYWKDKSIRIKDNNNEHSIRKEFFNGSFIINALASEEDNLDSFNGNIIILDE
                     IHGMKSSKKYTLMKNAQRAFRNKLLMAITTAGDKPNGFLAQRLKYCDKILDDLIEDDS
                     FFIFICDADADADGKIIDFTDPIHIQRANPSLGVTVELSELLHDAEVAYADPQTRNEF
                     FNKTLNIFTNSMTAYFDLQTFINSDDKYDWSLEELARLPIKWFGGADLSKLHDLTAAA
                     LYGQYEGVDIVITHAFFPRMAAHEKANDDGIPLFGWEQDGNLTMSNTPTVSYDDVINW
                     FKSMRDKGFKIQKIGFDKKFGRDFFTGMKRSGFTIVDAPQYYWKKSEGFRRIEVKAYN
                     GQLYYCHSTAFEYCVSNVRGIEKVDDMIQYEKVEKTSRIDLFDAAVFAACQMLEDTEK
                     GGYVSDWLKGAKN"
     gene            13148..14368
                     /locus_tag="U1335_000282"
     CDS             13148..14368
                     /locus_tag="U1335_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEM5230797.1"
                     /translation="MSKRKPKNSNKIRSEPSSSFQMFVNEDYFRTMVTNGYTRLSDCP
                     EVHIAVHKIASLVSSMTIHLMENRENGDVRIKNELSRKIDINPYKWMSRKKWIYNIVR
                     TMILEGDGNSIIYPIVDKEGLIQDLKPLPPSKVSFQGDAFDYQVVYDYDTVFSPDEVL
                     HFSINADPEKPWKGQGYRVVLSDLLRNLKQASATKNEFMSGKYMPSLIVKTDANTAAL
                     SSQEGRDEVFDMYLKQSSAGKPWIIPAEMMEVQQVKPLSLNDIAIKDSVEVDKTTLAG
                     ILRVPAFFLGVGKFNKEEYDNFVTNTIKEFADIIQHEMTSKLLYSPNHYWLFNYRSLL
                     NYSMKELAEVGQNLYIRGLVTGNEVRNWLNMPPEEGLDQLVILENFIPADKIGDQKKL
                     EKGEDSGESSLSDA"
     gene            14340..14948
                     /locus_tag="U1335_000283"
     CDS             14340..14948
                     /locus_tag="U1335_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 family phage prohead protease"
                     /protein_id="HEM5230798.1"
                     /translation="MERAAYLTRSFKSNLAVREQQEGQQEKVIEGYFAVYGSETELWP
                     GAFEEIKIGAFDDTLDNDIRALINHNTELVLGRNKAGTLTLKVDDKGLWARVVINEQD
                     TDALNLYARVQRGDVDQCSFGFNIVEESTEFREDGTVKWTIEKIDLHEVSIVTFPAYE
                     ATGVQARKRDFEDLQERTLESRKQKLKEKLNYAKTTHAPSQN"
     gene            14914..16329
                     /locus_tag="U1335_000284"
     CDS             14914..16329
                     /locus_tag="U1335_000284"
                     /inference="COORDINATES: protein motif:HMM:TIGR01554.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HEM5230799.1"
                     /translation="MLKQLMLRRKIKVLNDNLTELNDGKNFDERSAQLEAAIEEARSD
                     EEIKAVEEEIDTLTQEQAEHQEKVDAIQAEIDELEAELAELEGKEPKAEPKEEPAAEP
                     EQRNKQKGELATMTRNKYFGGLTRAAMTELVERSEVKTFLENTRSLIQEKRAVNGSEL
                     TIPEVFLELLRNNMDQYSKLITKVWLKPVKGEARQNIAGTVPEGIWTEMIGKLNEVDF
                     KFNQVEVDGYKVGGFTAIPNSILKDSDLNLANDILFGLAQAIGLALDKAILYGKGTKM
                     PVGIVTRLAETQKPTYWGRNERDWTDLHETHLSVVPAGIADPIKFYQELATKLNVIEA
                     DYSDGNVFWAMSRKTHQALKIKLMSFNSAAAIASGLDNTLPVIGGDVTELNFIPDGHI
                     IGGFGSLYILAEREGATMAQSEHAQFIEDNTVFKGVARYDGRPIFGEGFAAVNASGKD
                     GAVAPKPTDVTFAADKSNAPG"
     gene            16340..16741
                     /locus_tag="U1335_000285"
     CDS             16340..16741
                     /locus_tag="U1335_000285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230800.1"
                     /translation="MKPTEVRVRALVTFSDSQSIIGLRRIDEEFVTTKERADYLNGLN
                     ETPLVVVLDEIKILHSESVSESVSESVSESVTESVSESVSESVTESVSESVSESVTES
                     VSESVSELASELASEVVTTRKPRRKTSKESE"
     gene            16745..17023
                     /locus_tag="U1335_000286"
     CDS             16745..17023
                     /locus_tag="U1335_000286"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230801.1"
                     /translation="MEHSNVLQLVKMKEGIKSDKRDKYLTELIKSSIDELEQVKGIAI
                     DLNLPHHVTFVADWTYYQYINKDQPTMPRYLQQKLHDYQITYRKQAES"
     gene            17020..17337
                     /locus_tag="U1335_000287"
     CDS             17020..17337
                     /locus_tag="U1335_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head-tail adapter protein"
                     /protein_id="HEM5230802.1"
                     /translation="MRWNEDCTLISLSEEPTLDELLQPIYVEVGIEVSCNKRSLTRSE
                     YYFASQANMNPSMVLEVHDFEYDNQLFVDFEGVRYEVIKTFENGDIIELTCEVVKNGT
                     GSN"
     gene            17318..17671
                     /locus_tag="U1335_000288"
     CDS             17318..17671
                     /locus_tag="U1335_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HEM5230803.1"
                     /translation="MALDLTSEIMSALEEWSEEVEQEVDKAASDVVDKAVAKLRVSSP
                     KMTGNYRKKWAKKRLKNGTYVAHVRGPDYRLTHLLENGHINRDGGRTSPQVHIAPVEE
                     EAIAEFEERIRRIGQ"
     gene            17668..17991
                     /locus_tag="U1335_000289"
     CDS             17668..17991
                     /locus_tag="U1335_000289"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230804.1"
                     /translation="MKLSEFAAIMKALGIPCRYRQFKKGEHPKPPYAVYYQDGEDNLN
                     ADNEAYHTIKSVTVELITDKKNEALEDTLKSLFNQNKLFFEFSDEMYIESEGLNQVIY
                     NVNLI"
     gene            18005..18610
                     /locus_tag="U1335_000290"
     CDS             18005..18610
                     /locus_tag="U1335_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM5230805.1"
                     /translation="MTKKPENKIEYGLEKVHIAKITSEDAMGNLTYDTPQALPGAVEL
                     TIEPQGETIDFQADNVTYHGGSTNKGYTGTLTIARMTDYFQTEILGEKLASDGTQSEF
                     ADAEQAAFAMMFQIEGDKNATRHLLYKCTVSRPKQGSKTKSGDPNTTELSFASVPRSS
                     DKAVKTKTTANTKKEVYDGWFTNVYKPADGVTFGATEGVGS"
     gene            18610..19029
                     /locus_tag="U1335_000291"
     CDS             18610..19029
                     /locus_tag="U1335_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001227145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230806.1"
                     /translation="MERLYQIGDQEFRLVTNGYTPIAYKNQFGRDYFQDMMNMFQGDA
                     LLKMVALSQEQKEVDVSQLDMSMLKDFDMTFFNRLFWTFVKSGDPTVKPYDKFYMDLE
                     YFPVQDVAPILMEMLEANMATKKPSMTANLQAMSFSQ"
     gene            19306..22113
                     /locus_tag="U1335_000292"
     CDS             19306..22113
                     /locus_tag="U1335_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000918338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HEM5230807.1"
                     /translation="MAGKIKGINIEIGGDTTGLDKALKNVNKSASDASKEIKEIDRAL
                     KFDPGNVVLLGQKQELLAKQVSNAKEKLETLKTAEEQVQKQFAEGKIGEEQYRAFQRE
                     VEVTQNVLKGYENKLENVNQALAGNADAVQNNAQTMKGLQEETNNLLKADLLNDFSGM
                     IADASQQLIDFGQNSLEAFRTVDEGMDTIVTKTGAGGQSLEEMQNIASNLATTIPTDF
                     TTAGSAVGEVNTQFGLMGDALQTTAADMIKFAEINGTDVTSATQTSKQALEAYGLSVD
                     YLSDVLDSATYVAQNTGVSVDDLMKKAVDGAPQIKALGLSFDEGVSLIGKFEKAGVDS
                     SAALSSMSKAAVAYAKDGKTLQEGLNDTVTAIQNSSSETEALTLASEVFGSKAAPRMV
                     DAIKRGTLNLNDLGAAAEESAGTVSSTFDATLDPIDKFTTAQNMSTEAMAEIGGMIAE
                     VVAPALESMARIFKSVAQWVGNLPGPIKTAIVAFGGIVAIAGLLLPIIVGIVTVLPTM
                     MGFLAGIAGAAAPIIAPVLGIVGAIAALIAIITYLWNNNEAFRTAVIEIWNAIMLVIN
                     AVIQQISAFVMSIWGTLVTWWTENQELIKSSAEIVWNAIMSVINTVMTALQPLIQAAW
                     SNIQLVIETVWTVIKTIVETTINTVLGIIKAVMQAINGDWSGAWETMRGVVDGIINAI
                     KSIIETVLTAIQQFIQTTWQAIVTYIQFVLNMIFNIVSTIWNSILSFIGNIVTSISNT
                     ISNVFNGISSTISGVMSGIFNTVSSVWNGIKDTITNTINGARDAVSNAINAIKGFFNF
                     EWSLPRPKLPRFHISGGEAPWGFGGKGSLPSIDITWFAKGGILTKPTIFGMNSNGLMG
                     GGEAGKEAVLPLNESTLGMIADHIMSTVKDKIVVNVEQPQPQPIILNIDGKTFAQLIV
                     GHVSDAQAQRIQIIEGGGTVG"
     gene            22061..22825
                     /locus_tag="U1335_000293"
     CDS             22061..22825
                     /locus_tag="U1335_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016356247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM5230808.1"
                     /translation="MHKHNVFKSSKEVGQLAKHYGIRYNGRHSFEDEGLLLLNERSIS
                     IPNKKKVLVPIPFSNEKYDFSTVYGGQLYEQRTLTYQIKIKNTIYGTKEAMNMAKTNV
                     INWLMGTTGLSPLYDDAIPGYYFLAEVQGDSAFEEDWAHGVLKITFTAYPFMISERAE
                     GSDIWDDFNFELDAFQDIAFEVKGSLDILLVNTGISLARPEITSTSNMTLTMRNQQFS
                     IIPGSRVYDFFTLEKENEIRIEGNGRISFKWFKELI"
     gene            22825..24174
                     /locus_tag="U1335_000294"
     CDS             22825..24174
                     /locus_tag="U1335_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016356248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM5230809.1"
                     /translation="MYAVSLINGANVTPIHDSMAGGNKLLSAIVKFEINKIAQFDFQF
                     LPNNAGYKALIKPLQTMVQVINMRTGREVFYGRIAPITNDMAESGVFTFAYNAKSELD
                     FLNDSKQRQQIYRGKKSDFVKQVLQFHNDNLESYKEFLPGDLSDLIATGDHMEADVDP
                     AKSTFATLTDLVLNEYGLELQIRKENGKRYLDFKRQIGVDSDTEIKLSVNLLSLKQHI
                     NPEGIVSRLLVYGKQNSETNQRVNIASVNNGKDYIDRPDLIAEYGIKMETATFDDIED
                     PVALKQAGESQLATQKAVAYQYSVSAVNLSHINPNFDEFEEGNRYRVINPVMFIDERL
                     RVVARQIDLVSVERSNLTIGDKFKSAEEWQLDNVRRRTKQLVTTRQLKEQQSQLEEVR
                     VIASTTAETVETVSTAVSVQSSQLLSAQDKQKLDYLLVTKEINLDELITRVEALERK"
     gene            24178..25605
                     /locus_tag="U1335_000295"
     CDS             24178..25605
                     /locus_tag="U1335_000295"
                     /inference="COORDINATES: protein motif:HMM:NF012863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEM5230810.1"
                     /translation="MGIDNHLKVIKEGVFGRDVRQAIHDGIQQAYDDATANGNANMEV
                     AKARGTAVTLGDRLQTMDGKISQTTTDITRTEARIDDLIANAGNGTVPSELTDMRIGY
                     DGTGFKTAGEAMRTQFLELNNDLDTAAENIGLVRPNLLNVEGQNRTNNGITWTFNLDG
                     TVIVNGTATYNEYNKTTITLSAGEYYVSGAPLGSQTNTYHIMYTNGPSGASDVFFEIG
                     NGSTLILSKDTSIDFYIRIMNKTTVNNVVFKPMIAKKAYGRLPYLPYKKLFQISPPTS
                     SNWSGAVANFIGDSITHGAYGNYVDGVKTRLGLSVARNYGIGGCLMASSSEDQRYRPV
                     VNRWNEMEEADIIFVFAGTNDYSHQVPIGDATSTDITTFNGALNTIMDGLRNKYPDKL
                     VIFSSILHRYNDNSLPIKVDSYREAIRERCEAKQFIFYDIYRNSGFDFVRGYYDKVLT
                     TDGLHPNKKGAEILSRKIAAFINCQ"
     gene            25744..26130
                     /locus_tag="U1335_000296"
     CDS             25744..26130
                     /locus_tag="U1335_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016180814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HEM5230811.1"
                     /translation="MFDFLRELIATEDGLVLFLLGLIVVMEIVDFLSGTFAAMINPDI
                     EYKSKIGINGLIRKMMGIILLTVLIPMSVLLPEQTGVAFLYTIYVGYLILTFKSLVEN
                     YGKAKGDTSIFENVTAAFEKLIGKGK"
     gene            26227..27585
                     /locus_tag="U1335_000297"
     CDS             26227..27585
                     /locus_tag="U1335_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000405194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEM5230812.1"
                     /translation="MTINLETSIRWMNDRVGKVTYSMNYRNGPNSYDCSSAVYYALMA
                     GGAISAGWAVNTEYMHDWLIRNGYVLVAENKPFNAQRHDVFIWGKRGYSSGEGGHTGI
                     FVDNVNIIHCNFKRNGITIDDYNKVSRGMYYYLYRPANQPSISNKSLDQLVKETLAGG
                     HGNGDTRKASLGSQYEAVMAVINGKASASEKSDEELAREVLAGKHGAGEDRKRSLGPR
                     YEPVQAKVNELLKAKEKPSEVVKNEPQTVQFKEDGDLSFNGAILKKSVLEIILKKCKE
                     HDILPSYALTILHYEGLWGTSAVGKADNNWGGMTWTGQGNRPRGVVVTQGLARPSNEG
                     GHYMHYASVDDFLTDWFYLLRKGGPYNVSGALTFSESVKGMFQVGGAKYDYAAAGYNS
                     YLVGATSRLKAIESENGSLTRFDATSNNVHSVDPDKISVDIEGIEVTINGVVYKLEKK
                     PV"
     gene            27725..27910
                     /locus_tag="U1335_000298"
     CDS             27725..27910
                     /locus_tag="U1335_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000139836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HEM5230813.1"
                     /translation="MTERELKKIAKKQGFSKTNFGKGSHEVWKHPDGRTVTIPKPKEK
                     DYRPGTLNNILKVLYGE"
     gene            27970..>28159
                     /locus_tag="U1335_000299"
     CDS             27970..>28159
                     /locus_tag="U1335_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000878125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HEM5230814.1"
                     /translation="MKYNYLALFEADKENGGYSISFPDFPGAFSEADNLSEAIFNARE
                     VLEIYTIMFEDEGKEFPKP"
BASE COUNT         9096 a         5348 c         6514 g         7201 t
ORIGIN      
        1 aaataaaaac acaaaagttc aaataacttg aactaatttt tggaaaggag aattgtatgg
       61 catttgatta ttcaaaacta agcggaagaa ttattgaaat ttttaatagc cagcaaaaat
      121 ttgctaaagc tatgaatctt tcggagagaa ctatctcgct taaactaaac aatcaacgtt
      181 tttggaagaa caacgagatt gctaaagcat gttcattgtt gaaaattcca gacaatgagg
      241 ttggggaata tttttttaaa cataaagttc aagaaacttg aacaaaacga aaggaataaa
      301 catacatgaa cgaaattttt gtttttcacg ggcaagaagt ccgtactgta accattaaca
      361 acgagccttg gtttgttgga aaagatgtag ctgacatttt aggctattca aaatcacgaa
      421 atgcgattgc acttcatgtt gatgaggatg acgccctaaa acagggcatc acagacaatt
      481 taggtcgcat gcaagaaact attatcatca atgaatctgg tctttactca cttatcttat
      541 ccagtaagtt gccacaggcc aaagaattca aacgttgggt cactagtgaa gttttgccac
      601 agattcggca acagggagct tatttgccag aaaatttatc tgatgaggct ttcattgctc
      661 tatttactgg gcagaagaaa ctgaaagagc aacagttggc attggctcaa gatgttgact
      721 atctcaaaaa tgagcaacca attcatccta gttttgctca agccttgttg aagaagagaa
      781 aagctcgtgt cgtcgcttgt ctaggtggaa tggacagtcc agcctatgct gataaagtct
      841 ttgcacagtc ggtctttcga caagctgagg ttgattttaa agaccatttc aacatcaatc
      901 gctatgatat gttgccaaag aaattcgctg atgcggcatt gtcctattgg atgacatggg
      961 aaccaagcac aaacaccaaa atgaaaattt tggagatgaa tgcttatgaa ttgtaaaacg
     1021 caaaaaaagc ctgacggcaa tcaggctcaa atctaaagat acaagaggat tataccatga
     1081 atgatctaat gattcaaatg ttggaccagt ttgaagctgg gctaatggat agagcgttaa
     1141 aggtcatgca cgttgtcatg gacgaaaaac gacgatatcc aatggaactc aataagtcac
     1201 aatgtgccga aatgctctta ggaactaagg atacaggaag ttttgatgca cgatttaatt
     1261 gccacaaaga tttcccacgt attccgaatg ctcgcgagaa gtaccctcgt gatgcagtga
     1321 ttgaatggta tcacgataat tggcagagga cagcgatatg acagaagaat tgatgttgac
     1381 agctgagcaa ggtttggcat ttattgctat tttgacccca atcttaatct ggctgatccg
     1441 taaacctgtt gagattgaaa tagaggtcaa ggagccagtg attgaagaaa agcaaccaga
     1501 aagaaatctg cgttacttgc agattcatag ataccacgga ggatgatatg aaatttttgg
     1561 aaacattaaa aaagtttatg agctttgagg aagatgacta catccctcag aataagcatg
     1621 agttggaacg tgaattgtcc aacgctaggc acacagccat ggaatacaag aagttagcct
     1681 tactaaaaaa ccaagagtgt gtgggtcagg ctagacttat tgatcaatta aacagacgga
     1741 ttgagttttt agagaatgtc aacaagtgcc aggctgaact attggcagat cgtgaggtct
     1801 agctatggtc tgggttgtgg caaagaaaaa caaacgtggt cgcaggaagt accactacaa
     1861 gagatctttt gatacctggc aagaagccag ggtctatcaa caagaccttt ggaataaggg
     1921 cattacagct gaaatgcggg aggagaagga tgatgaatag acaatcaacc ctcaattata
     1981 tttttacggg catcattttt ttactaatta tcatgtctat cggaatcctc tatcgcaccg
     2041 agcaactgca agatcaggtt gatagcttgc agggacaggt caatacttac aggaccttga
     2101 tttttaactt gtacggagaa aacggagggt gagcatggct aaagatttta tgcttcaatt
     2161 ggcacttgaa agtctgtcta agtgcctgag taaagagtgg agagagtcgg acgaagtgat
     2221 tcttttcagc ctcgcaaata aagaccagat aacacaagat gagcggtata gagagacaga
     2281 aaaatgcaac tactatggaa aacgcatttg tatttttgca agtcaagtca agaaaaataa
     2341 ctatatcact ctacacaaaa gtatgctgac aaatattgtt gacattatgg agaaaaactc
     2401 caaccagaaa gtagaggggt aggacatgga aaaattaaaa aatatgtata gaggagtcta
     2461 tggatggaca gtacaaaatg acaaaccgtc tccgccagca catgatttac catcagttgt
     2521 taaggataga gtagattact tttgggatat ggctgaagac ggaatgacat ttatgggagc
     2581 gatggaatgc atctttgcta atcaaaaacc ggaagactat gatctgggag ctactaaaga
     2641 ttggttgcca atgtctcaag aatttaagga ctgggttggt cacgcttatg gtatggcaca
     2701 gatggaaata gctgtatata tgatttacgg caatccacag gagattgaga aatgaatgat
     2761 ctacgcattc cacctcaaga tattttagcg gagcaagcgg tacttgggtc tatttttata
     2821 tctcctgaga agattgtgac ggtgtctgaa tacctcaccc ctgtagattt ctttaggcct
     2881 agtcaccaaa ttttgtttaa ggctatgcta gagatttatg agcgaggaga agctatagat
     2941 gccgtcacta tcaaagggta tttggagtca caaggcagtc tcagcggagt aggcgggttg
     3001 ccctatatag ctgaagtggt caatagcacc ccgacaagtc agcacgtcga gggatatgct
     3061 aagattgtgg ccagcaaatc aaaagccagg accgtcatag cagagctgac agatgctatc
     3121 caatcagcct atgatgatgc attgtcaatt gacgatgtaa tcgctaagac agagcagaca
     3181 ctggtctcag tcaataacag taagagtaaa ggtagcttcc aacctatatc acaggtcatc
     3241 cttggtaatt tcgatacgat cgaggagaga gctagtagat ctagcgatgt gactggctta
     3301 ccaacaggat ttcgtgattt ggacaaggcc accacaggac tacacaaagg gaatctcatt
     3361 gtcttggcag ctaggcctgc aatgggtaag acagcatttg ccctcaacat cgctcagaac
     3421 gttgcgaccc agtcagattt gccagtggct gtcttctctt tggaaatgag agcagaagcc
     3481 ctggttgagc gtatgttggc agcagagggc ccggtcaaat cccagtctat cagaacaggt
     3541 caattatcaa gagacgaatg ggagaggctg gtatatgccc aagggcaact ctacaacgcc
     3601 ccgatttaca tccacgatac acctggaatt aaaatcagcg agattcgctc gcagtgtcgg
     3661 aagctggcca gtgatgtcgg cggactaggg ctaattgtga ttgactactt gcaacttatc
     3721 acgggaagcc gttctgaaaa tcggcaacag gaggtttcag acatttcccg tcagttgaaa
     3781 gtgattgcaa tggagctgaa tgttccagtg attgccctga gccaactatc tcgtggggtt
     3841 gagcagcggc agaataaaag accaatgctc tctgatttgc gggaatctgg ctctatcgag
     3901 caagatgccg acatagtggc atttttacac cgcgaatctt actacaccaa acatgaacag
     3961 gggcaaccag aaaacaatat cacagagctc attctggaaa aaaacaggca tggaaaatta
     4021 acaacaatcc agctttattt ccacaaagag tatgtgaaat tttcagatgt ggaggaaagg
     4081 aaatgataaa aaagacagat gtcgtaggct tcttatcctt cttcaaattc ccaaaaccat
     4141 tcatttatga cgagaagtac aagtctctta gtaataatgc taagttgatg tatatgctac
     4201 tctttgacag acttgaactt tctgtaaaaa atggttggca tgattcagaa ggaaatgtgt
     4261 ttcagtatta caccaacgat caactgatga tagatcttaa ttgcaatagc aacaagacaa
     4321 tcatcaagat aaaaaaagaa cttaaagatg caggactttt gtcggaagta agacagggaa
     4381 tgaatcttcc taatcgcatc tatcttgagg ttttgagtgg aagtgtagaa aatacacttt
     4441 cggaagtgca aaaaatacac actggaagtg tagaaaatac actttcggaa gtgcaaaaag
     4501 tacacacaat caagactgag aataacaaga ctgataagaa caataatata gatattatta
     4561 cagaagtgat tgcttacctt aaccaggttg ctgggactag atttgctttc agctcacaag
     4621 ctacccaaag acatatcaat gccagactga aggagggtta cacgttagaa gacttcaagt
     4681 atgttattga tatcaaggtt agcgaatgga aggggactga tttcgccaag tatttgaggc
     4741 ccaccacttt atttggatct aagtttgaaa actatgtgaa tcaaaattca cggcagagca
     4801 gaggaacttt tgccaatgca atcgatgaaa ggttgggctt ctgatgaact ttaatgaatt
     4861 tagaaatcgt caagttctgg atgatacctg cgaggtccac ggctgtcaat tgtggtctta
     4921 ccatattgtg ataaatggac gaagggaaca gactgtgact tgtcctgaat gcaccaaggc
     4981 tgcaattagc aattttgaaa aagagttgca aaggcagtct gagattaaca gcaaattagc
     5041 agatacctac tctgtctttg aaagggatag catggtatcc acaaatttgg taaacaagtc
     5101 tcttgataac tatgagatta ggtctgatat agacccaaaa gctattaact atgccaaacg
     5161 tatcgaggag ttttataggc tcggtaagac aggcaacagc atagtgactg gtccgtcagg
     5221 agttgggaag agtcatctaa cttatggatt ggccaagtgg atgaatgagc aattcaaggc
     5281 atacggcaat ccaaagtcgg tcctctttgt gtctgtggta agcctattta acaaaatcga
     5341 ggagagtttc tcggttgaca atggctattc aaaggctaaa atggttgact tgcttactag
     5401 ggttgattac ctttttttgg atgacctagg caaagagagc aggaaggacg gtaacactgc
     5461 caagaacgcc tggcgacacc aagtgctcta tgagatactt gacaatcgat ccaacaccat
     5521 tttcaacaca aatctgaaca gcagtgaaat caaagctctc tatgcagatg atttcgggaa
     5581 cggggccttg tctagtcgta tccttgctgg cgtgacaggg aatagtttta agtatccaga
     5641 tgatatggaa gataggaggt attaacattg aagctatgac tgtttgggct ctctttgata
     5701 gtggcaatgg ttcctacaca aaaggggcag ctaccataaa tcgttcaggg gggggcgaac
     5761 attgacatct atccgattgg catagacata gaaaataaga acaatcactt tatcaacttg
     5821 aatttagctg actatggcag gctttttggg gacaatactc tatttgatac tttggacaaa
     5881 ttgccaaagc ctgacttagt gatagctagc ccaccgtgtg aatcatggtc taatgcaagt
     5941 gtcatgaatg aggggaatgc ctgttggaaa caagaagacc tttcagatag tttattcgca
     6001 ccacagcgtg aggctagtat gttcacaatc aggaataagt ccgattatga acaggcttat
     6061 atcaattatc agtacgatag gcagttcatg aagcgtgtga atggagaact atgtgccttc
     6121 aacactgttg agattatcaa gcggtacaat cccagatatt tcattattga aaaccctgca
     6181 agtggtcggc tatggaagta cattgaggat gttatgggtt ttaagctccc gtatctaaat
     6241 attacacgct acaacaacta tgactatccg cttcagaagc ctacaaagtt tgccagcaat
     6301 atcaacttag atttgaaaaa tgaaatcatt aaacaggaaa ttgaatgggg acatttttca
     6361 aagtcataca atgagaggtc aaatatacct caaaaactcg tgattgagat atttagcaag
     6421 atatataacg aattttcaaa ggaggaataa tggacggtgt tgatagactt ttcgcgatgc
     6481 agagctggtc cgtagccaac gactgcatta ttcggatgtc ggacaaagtc cgactgatga
     6541 agttacctga caatgaattt cgtcaggaat tagatcggat gacaaagtat tgtcaggaca
     6601 ataaatacaa aggagttaca aatggcatat aagggaatca agcttatccc aaatagtcta
     6661 caaattgaaa tcaacttggc aagtctactg agcgaacatc aatttttgca ggaagaaaat
     6721 taagaaccta tgcggaaatt gaagaattag aaaccaagat tgagcagctt gaatctgata
     6781 aggagcgact gcgtgagata gctgtcggat tggcggacaa actctgggaa ctagagtggg
     6841 acatgactag aagctctgct atgtcccaga aagcaaatcg tagaaagtgg ggtacaaaat
     6901 gaatctaaat tatcgggact tgcatatcgt aaaacacgca atccagacac acatggctag
     6961 ggccaatcct agagatggag atctggaaca agaggggcgg ctacttggtc gcgtaacagc
     7021 agagattgaa gcactgaaag aaaaattcaa cggcaatggc tgtggttgca gctaggagga
     7081 agacatggca aaaaatatta tcggactaga tttatctagc attgcagacg gcggtctgca
     7141 ggaaaaactc aacaacgaat tggcacgggt catcgagaac atcttggacc ccaatactga
     7201 tccgacggtc aagcgggaag tgtctatcaa gctggtcttg aaaccgaatg accagcggaa
     7261 ctctgtcgac actatcatgg aagtcaaatc taaattggct ccgcaagtca agctatcgac
     7321 gactatctta gtcggtcaaa attacgagac aggcgaaatc catgcgaacg aattgctgag
     7381 tgcaatgcct ggtcaaacat tttttgacaa tgacgcagta ttgcggactg atacaggtca
     7441 acctatcgac gaaatagaaa aagaagacaa tccagcaatc attgatttta aaaagaaagt
     7501 aggaaactaa tatgtcagaa attacaagag atgcacttga gtacgcagtt gagctacacg
     7561 aaatggctcg tgaaactatc accagcgaaa gcggaaaaga atattatgat gccaataccc
     7621 acagctatcg tgaactagag cccaaacgct atccagcagc cctcaatctt cgtaccctcg
     7681 caagtctagt agattatctc aagtctggct tggacgaact gaagaaacag cgattgattg
     7741 tgctggtgga agatccaaca accgtttgtg tctattctga aaatgacgaa ttagagaatc
     7801 ggaccaagct agtcgaagtt gtggccacgc taccacatat cacgcttgag caatttatgc
     7861 cgcaagaagc ctttatcatt caggcacagg ctggttttgt cgcaaatgaa gacagagctt
     7921 ctatgattaa ctttgcaagt cacttggaaa tcaaagaagc gtctgaagtt gttgacaacg
     7981 gcgtgtccca ggttgctacg gtcaaaaatg gtgtcgcatc actagccaag ggcatagtgc
     8041 caaatccaat ccaacttgct ccctaccgaa catttaccga agttgctcaa cccgaaagcc
     8101 agtttgtatt ccgcatcaat ggtcgggccc agttggcact ctttgaagct gacggagggg
     8161 catggacctt ggaagctgtc aacaatgtag ctgcctacct caaagataag ttaggagagc
     8221 aggagcattt gactatttta gcgtagggag gtggatagat cgtgaaaaat aaaattagac
     8281 tagttttagc aactattgga cttatcggag tgttggcagg ttgtgaaaga caagccgatg
     8341 tggtccgaca caatttgtcg gaagaggcag acaacttcaa cgtagtacga aaggtaacag
     8401 tcttgaatgc aatcacaaat gatgtgatgt tcgagatgag cggtcggatg tcaattgtag
     8461 cagatactac agataatcaa ttggaaattc tagtagagac tgctgatgaa gaatatcaga
     8521 aacacattat cggtttatca gataacgtat cctatgtagt gcaggatgtg aagactaaag
     8581 atgtatcagc ttatgactac acaatcaact tcaatccgaa aatgtggttg ccgctggaag
     8641 tcaagacagt agattaggag aaaatagatg aacggttatg aatttatggc acgatatccg
     8701 tttctgacag catttattgt gtgggtagcc tgtacctatt tcgcagagtg catcaagtat
     8761 ctatcgggtt acaaggaggg gagagatgaa caagaggata aggaaaaaga aggcaaaaca
     8821 agctgaacta aaaaaacaac aggagattgc agaactgttg gaacagctag gtcagaatcc
     8881 agcagcactc aataaagcac tgcaccaaat aggtgtggcc tttagcgagg tatttaatgc
     8941 aatcgctgta gtctctcgga aggcatcgca aaattttaaa gattggagta agcaatttga
     9001 cacgacttga caaaagagag ttatcgcgac tcgactcaga actcaacaag tatcggtcta
     9061 ttgaccgctc aatcaggaat aggcaacttg aactatctgc tagaaatagc gatgatgaaa
     9121 tgggtattcg gtcaggtggg gtaagtaaac caactgaagc tattgtcatc aagtgggaca
     9181 gcgacccaac gattagacat ctcgaagcat ttaagacctt ggttgagaag ttacttgact
     9241 tgttgaccga tgaagatcga gagctgtttc atctacgttg gcagtatcca tgcctgaaat
     9301 gggaagaaat cgcagacaag aaattcatga gtctagcgac aatatacagg agacgagcaa
     9361 ttattcttga gcagtacgca gagctaaaag gtcacctgta aaatgagaaa aaagggtact
     9421 gtttttctca caaaaaaggt gttaatatga taatgtcgga acgagaagaa ggatagatac
     9481 ccgcaagagc cttttatttc agaggaacac atttcaagaa aaaccagaac tcgcccgaca
     9541 aacaacaggt cagtagcaga aatgcactgg cctttttact tgagttaaga aaggagggga
     9601 atcaaatgaa ctacgttgag ccaattcgaa acactgagga cattgatatg atgtgcgact
     9661 atctacgtga atggaatgaa cgcaactata tcatgttctt gataggaatc aatacgagct
     9721 tgaggatatc tgacatcgtt attttgaaag tctcaaacat ccgtggccat tacataattg
     9781 tgattgagaa gaagaccaaa aagcgaaaaa gaatcaaaat gaactctctt ttgaagaggg
     9841 agatagaaag atacatcaaa ggtaagaaag taggagacta ccttttccaa agtcgaaaag
     9901 gaaagaacag accgataacc agacaggctg cttactgcat catcaagatt gctgctctcg
     9961 actgcggtgt cgaaaatgtc ggcactcaca caatgaggaa gacctttggc tatcactact
    10021 acaagaagca taaggacatc gcaatgctta tggacctatt caaccattcc agcccagcaa
    10081 ttacaaaaag atatatcggt atcaaccaag accaacagga ccgagcattt gctagtttca
    10141 aacttggcaa gtagcgaatg ttacacaatg agaattgtta aattcgaaaa aacaagtgtt
    10201 tggaaaacca ataatatcaa gcagtttgaa aaaaagagaa atttgacaca atatgtgttg
    10261 aagataattc aaagagaaat tggtatagtt tttgcaccta aaattctgtt gtcaagggtt
    10321 gtttaaaaaa tgagaaaaaa gggtactatt tttctcacga ttttagtgat atatttgtat
    10381 catgaatttt tataaacaag taggacagct gggcaggttg tccttttctg ttgtggaaag
    10441 gagcaatcat gaaaccaaaa cgatatccat attctggaaa accaaagaaa aaggaagtca
    10501 tccaattctt ttctgaaaac caactcatag caacaaagat atttgaaaga tgcgacagac
    10561 caacaccaga gataactaag cgatatatag ggagtgcaac tgtatgacat tcaaacctgt
    10621 ccgaaagaca ttgaagtcta gtcgctggga taagtttcgt agtcggacct tgaaacgtga
    10681 caagtacctc tgccaagaat ctttgaggta tggagttgaa gtacaagctg aaatggtcca
    10741 ccatatttac ccagtttcag agtatccaga attggagttt acgtcgtgga acgtgattag
    10801 cttgaccaac aagatccacg gaacattcca tgacaggaag aatgacaaag tcatagggca
    10861 aggtctttac tggcaacgga aaagaaaaaa agagtttgaa caattcttcg aatctaggaa
    10921 agccccccct cataacaaaa attctcaaag ccattagagg accgggaagg agaagttttt
    10981 ccctcccttc aacattttga gaattttgtg caacgatttc taacacaaaa ttgggaagga
    11041 ggtgagaaat tggctagacc aattacccag aatactttca agaacaggac tgtgaagtca
    11101 atgaaagaaa tgaggaccta ttctaagcac tacgacgacc tcatagaaat ctattcaggc
    11161 ttgctatatg actaccatat agcacgggaa gagtttattg ccaacgggtc acaagtgaca
    11221 gaagagcacg agacatctcg tggtacaatc gtggaaagaa aaactccgct agttcaaacc
    11281 atggagaatc ttcgcaagga tatcctgaca tactcagacc gactgcagct gaatccaaaa
    11341 gctgctaatg tggaagtgat aaaaccagat aaggaagctg gtggactgga agggttgatt
    11401 gccaacttaa catgacaaga actcaaaaaa ttctcactga ctttcaaatc gctaagcaat
    11461 atgcagaaga tgttgttgct ggcacaatta ttgcagggaa gcgacgggca aaggcctgtg
    11521 ccagatttct aaaagacctt gccagtggaa agtttgattt tcgttcagaa caatttgaat
    11581 ttgtaataaa gttcattgag gggctggttg ttcacaggaa aggcgaatcg ctagaaggga
    11641 aaccgctgac caatgttcca ttcattttgc aagactggca aaaattctgt attgtcaatt
    11701 tatttggatt tttcaaaaag gggacctcca tccgaagatt tacagaggcc ctttttatgt
    11761 tacctcgtaa aaacggaaag actccctttg cttccgcaat ctgcttggcc atgtctgttc
    11821 tggaaaataa gagcgggacc aatgcttata tcctggcaaa ctcattaaaa cagacccgtg
    11881 aaagtttcga tttcatttct cacacggtta aatactggaa ggacaagtca atcagaatca
    11941 aggataacaa taatgagcac agcatccgaa aagaattttt caatggctca ttcatcatca
    12001 atgcactggc ttcagaagag gacaacctag actcgttcaa tgggaacatc atcattttgg
    12061 acgaaatcca tgggatgaag tcatctaaga agtacacgct gatgaaaaat gcccaacggg
    12121 cttttcggaa taagttgtta atggcgatta cgacggcagg tgacaaacca aatggtttct
    12181 tagcacagcg tttgaagtat tgtgacaaga tcctagatga tttgattgaa gatgatagct
    12241 tcttcatttt tatctgtgat gccgatgccg atgcggacgg aaagattata gacttcacgg
    12301 acccaatcca cattcaacga gccaatccat cgttaggagt taccgtagag ttgagcgagt
    12361 tgttgcatga tgcagaggtt gcttatgccg acccacagac caggaatgaa tttttcaata
    12421 agactttgaa tattttcact aactccatga ctgcttactt cgacctccaa accttcatca
    12481 attcggatga taagtacgat tggagcttag aagagttggc tcggttgcct atcaagtggt
    12541 ttggcggtgc cgacttatcg aagcttcatg acttaacagc agctgctcta tatgggcagt
    12601 atgaaggtgt ggatattgtt atcacccatg ccttctttcc gcgtatggcc gcccatgaga
    12661 aagccaatga tgacggcatc ccattatttg gttgggagca agacggcaat ctgaccatga
    12721 gtaacactcc aacagtttcc tacgacgatg tcatcaattg gtttaagtct atgagagata
    12781 agggcttcaa aatccagaaa attggctttg ataagaagtt tggtcgagac ttttttactg
    12841 gaatgaagcg gtcaggcttt acgattgtcg atgcaccgca gtattactgg aagaagtcag
    12901 agggattccg ccgtatagaa gttaaggcct acaacggtca gctttattat tgccatagca
    12961 ccgcattcga atactgcgtg tcgaatgttc gaggaattga aaaagtagat gatatgattc
    13021 aatacgaaaa agtagaaaag acatcacgca ttgacctttt tgacgcagca gtctttgcag
    13081 catgccaaat gctagaagac acagagaaag gtggatatgt aagtgattgg ttgaaaggag
    13141 cgaaaaattg agtaaacgta aaccgaaaaa ttcaaacaag atacggtccg agccgtcttc
    13201 tagctttcag atgtttgtca atgaggacta cttcagaact atggtcacca atggatacac
    13261 cagattgtct gattgcccag aggtgcacat cgcagtccac aagattgcaa gcctggtttc
    13321 gtcaatgact attcacctca tggaaaatag agagaatggc gacgtccgaa tcaagaatga
    13381 actatccaga aagattgata tcaatcctta caagtggatg agtcggaaga aatggatata
    13441 caacattgtc cgaacaatga ttttggaagg ggatggtaat agcatcatct atccaatcgt
    13501 tgacaaagag gggttaattc aagacctaaa acctttgccc ccttctaaag tctctttcca
    13561 aggtgacgca tttgactatc aagtagtcta tgactatgac acagtcttct cgccagacga
    13621 agtgctacac ttctctatca atgccgatcc agagaaacca tggaaagggc aaggatatcg
    13681 tgtcgtactt tctgatttgc ttagaaacct aaagcaagcc tcagccacta aaaacgagtt
    13741 tatgtcagga aagtacatgc cgtcattgat tgtcaaaaca gatgccaata cggccgcatt
    13801 atcctcgcag gaaggtcgtg acgaagtctt tgatatgtat ctcaaacaat catctgctgg
    13861 gaaaccgtgg attatcccag cagaaatgat ggaagttcaa caggtcaagc ctcttagtct
    13921 aaatgatata gcaatcaagg attcggtaga agttgacaag actacactcg caggtatttt
    13981 gagagtaccc gcctttttcc ttggcgtagg taaattcaac aaggaagaat atgacaactt
    14041 tgtcactaat acaataaagg agtttgcaga catcattcaa cacgagatga ctagcaagct
    14101 cctttattcc ccaaatcatt actggttgtt caattatcga agtttgttga actacagcat
    14161 gaaagagctg gctgaagtcg ggcaaaacct ctacatcaga ggtcttgtga ctgggaatga
    14221 agtgaggaac tggctgaata tgccaccaga agaaggtctg gaccagttgg ttattcttga
    14281 gaacttcata cctgctgata aaattgggga tcagaagaaa ctagagaaag gagaagatag
    14341 tggagagagc agcttatctg acgcgtagct tcaaatctaa tcttgctgtc cgtgaacaac
    14401 aggaaggcca acaagagaaa gttatcgaag gctattttgc agtctatggc tctgaaacag
    14461 agttgtggcc tggtgctttt gaagaaataa aaatcggtgc atttgatgat acccttgaca
    14521 atgacatccg tgcccttatc aatcacaaca cagagttggt ccttggtcgt aataaggctg
    14581 gaacattgac tttgaaagtt gatgacaaag gtctatgggc ccgtgttgtc ataaacgaac
    14641 aagatactga tgcactcaat ctatacgccc gtgtccaacg tggagatgtg gaccaatgtt
    14701 cattcggctt caacatcgtt gaggaatcga ctgaatttcg tgaagatgga actgtaaaat
    14761 ggaccattga aaagattgat ttgcatgaag tgtccatcgt aaccttccct gcctatgagg
    14821 caacgggtgt gcaggctcgg aaacgagact ttgaagatct acaagaacgg accttagagt
    14881 cccgtaaaca aaaactaaag gagaaactaa actatgctaa aacaactcat gctccgtcgc
    14941 aaaattaaag tcttgaatga taacttgact gaattgaacg acggtaagaa ctttgatgaa
    15001 cgtagtgccc aattggaagc agctatcgaa gaagcacggt ctgatgaaga aatcaaggct
    15061 gtcgaggaag aaattgacac tttgacacag gaacaagctg aacatcaaga aaaagtagat
    15121 gctatccaag ctgaaattga tgaactcgaa gcagaactgg ctgaattgga aggcaaggag
    15181 cctaaagcgg aaccaaaaga agaaccagct gctgaacctg aacaacgcaa caaacaaaaa
    15241 ggagaacttg caactatgac tcgtaacaaa tattttggcg gattgactcg tgctgctatg
    15301 actgaattgg ttgaacgcag cgaagtcaag acatttttgg aaaatactcg cagcctcatt
    15361 caagaaaaac gtgctgtcaa tggctcagaa ttgaccatcc cagaagtatt cttggagttg
    15421 cttcgtaaca atatggatca atattccaaa ttaattacaa aagtttggct caaacctgtg
    15481 aagggtgaag ctcgtcagaa catcgcgggc acagtaccag aaggtatctg gacggaaatg
    15541 attggaaaac tcaatgaagt agatttcaaa ttcaaccagg ttgaagttga tggctacaag
    15601 gttggtgggt ttactgctat ccctaattct atcctgaagg actccgatct aaatcttgcc
    15661 aacgacattc ttttcggtct tgctcaagct atcggtcttg ctctagataa agctatcctc
    15721 tatggaaaag gtactaagat gcctgttggt atcgtgacac gattggcaga aactcaaaaa
    15781 cctacatatt gggggcgaaa cgaacgtgac tggactgact tgcatgaaac tcacttgtca
    15841 gtagttccag caggtatcgc agatcctatc aagttctacc aagaactagc cacaaaactt
    15901 aatgtcattg aagctgacta ttcagacggc aatgtcttct gggctatgtc tcgtaaaacg
    15961 catcaagctt tgaaaattaa gttgatgagc ttcaactcag cagcagctat cgcttcaggt
    16021 cttgataata cattgccagt tattggcggt gatgtcacag agcttaactt catcccagac
    16081 ggacacatta ttggtggatt tgggtcactt tacattttgg cagaacgcga aggtgctacc
    16141 atggctcaat ctgaacatgc tcaattcatt gaagacaata ctgtattcaa aggagttgca
    16201 cgctatgacg gtcgtccaat ctttggagag ggctttgctg cagtaaacgc ttctggaaaa
    16261 gacggagctg ttgcacctaa accaacagat gtgacctttg cagccgacaa atccaacgct
    16321 ccaggttagg aggtaaacca tgaaaccaac tgaagtaaga gtaagagcac tcgttacttt
    16381 ttccgatagc caatcaataa ttggccttcg gaggattgac gaggagtttg taacgactaa
    16441 agagcgagca gattatctta atggattgaa tgaaactcca ctagtagttg tcttagacga
    16501 aatcaagata ctgcactctg aatcagtaag tgaaagtgtt tctgaatctg tgtccgagtc
    16561 agtaaccgaa agtgtttctg agtcagtgtc cgagtcagta accgaaagtg tttctgagtc
    16621 agtgtccgag tcagtaaccg aaagtgtttc tgaatcagta tccgagttag caagtgagct
    16681 ggcatcggaa gtcgttacaa ctcgcaaacc tcgtagaaaa acatcaaaag aaagcgagta
    16741 agccatggaa cattcaaatg tcttgcaact ggtcaagatg aaagaaggta tcaaatctga
    16801 caaacgagat aagtatctaa cagagcttat caaaagctct attgatgagt tagagcaagt
    16861 caagggcatt gccattgacc tgaatctacc tcaccatgtt accttcgttg ccgattggac
    16921 ctactaccag tacatcaaca aagaccagcc aaccatgcca cgctatctac agcagaaact
    16981 gcacgactat caaatcacat ataggaagca ggcagagtca tgagatggaa tgaagattgc
    17041 accctaattt cgctttctga agagccgaca ttggatgagt tgttacagcc aatctacgta
    17101 gaagtaggta ttgaggtatc atgcaataag cggtctctca cacggtcaga gtattatttt
    17161 gcatcacaag ccaacatgaa tccttccatg gtacttgagg tccacgattt tgagtatgac
    17221 aatcagttgt ttgtggattt tgaaggagtg agatacgagg tcatcaagac atttgaaaat
    17281 ggggatatca tcgaattgac ttgcgaggtg gtgaaaaatg gcactggatc taactagcga
    17341 aatcatgtct gcactagaag agtggtcgga agaggttgaa caagaagtcg ataaagctgc
    17401 tagcgatgtt gtcgataaag ctgtggccaa gttaagggtc agcagcccta agatgacagg
    17461 aaactataga aagaaatggg ccaagaaacg attgaagaat ggaacttatg tggcacatgt
    17521 cagaggacct gactatcgcc taacacattt acttgaaaat gggcatatca atcgtgatgg
    17581 tggacgaacg agcccgcagg ttcatatcgc accagtggaa gaagaagcca ttgccgaatt
    17641 tgaagaacgc atcaggagaa ttggccaatg aaactatcag aatttgcagc tatcatgaaa
    17701 gcattgggaa taccgtgccg ttaccgtcaa ttcaaaaagg gagagcaccc caaaccgcct
    17761 tacgcagtct attatcagga cggagaggat aacctcaatg ccgataatga agcgtatcac
    17821 actatcaaat cagttacggt agaactgatt actgataaga aaaatgaagc attggaagat
    17881 acattaaaga gcctgtttaa tcaaaacaag ctcttttttg agttttccga tgagatgtac
    17941 attgagtccg aagggctcaa ccaagtcatc tataatgtca atctaattta agaaggagaa
    18001 aaatatgact aaaaaaccag aaaacaaaat tgaatacggt ctggagaaag tccacattgc
    18061 caaaattacc tcagaggatg ccatgggcaa tttgacctat gatactccac aagctctacc
    18121 tggtgccgtt gagttgacaa tcgagccaca aggagaaacg attgacttcc aagcggacaa
    18181 tgtgacctac catggtggct caaccaacaa gggatataca ggcacattga cgattgcccg
    18241 catgactgat tatttccaaa cggaaatttt aggggagaag ttagcttcag acggaacaca
    18301 gtctgagttt gcggatgcag aacaggcagc ctttgcgatg atgttccaaa ttgaagggga
    18361 caagaatgct actcgtcact tactttacaa gtgcacagtt agtcgtccta aacagggctc
    18421 aaaaaccaag tcaggtgacc caaataccac agaactatca tttgcatctg ttccacgatc
    18481 gtctgacaaa gctgttaaaa caaagacaac tgcaaacact aagaaagaag tttacgacgg
    18541 ctggtttaca aatgtctata aacctgcaga tggcgtgaca tttggagcga cagaaggggt
    18601 gggcagctaa tggaacgact ttatcaaatt ggggaccaag aatttcggtt ggtgactaat
    18661 ggctatacgc caattgcata caagaatcaa tttggtcgtg actatttcca ggatatgatg
    18721 aacatgttcc aaggcgacgc cctattgaaa atggtagcct tatcgcagga acagaaagaa
    18781 gtagatgtta gtcaactaga tatgtccatg ttgaaagact tcgatatgac attctttaac
    18841 cgactgtttt ggacttttgt gaaatcggga gaccctacgg tcaagcctta cgacaaattc
    18901 tacatggatt tggaatattt ccctgtccaa gatgttgctc ctatcctaat ggaaatgttg
    18961 gaggcaaaca tggccacaaa aaagccttcg atgacagcga atctgcaagc gatgagcttt
    19021 tcacagtaga gtcctattta tcctgctgta aagaagtcgg tctgtcggtc gaggaactac
    19081 aacatatcac gcttggaatg gctcttgact accaaacaga ctatatcaat cttcgtgatc
    19141 cagataagca aacggaagtt aagacaagaa gagctacaca ggctgatatt gataatttct
    19201 agagtgcttt gagagaaatt ctacggcgta ataccttgct agctcaagga aaacgttgct
    19261 agaatcgctc tctcagcact tttattttca acgaaaggag gcaacatggc aggaaaaatt
    19321 aagggtatca atattgaaat cggtggcgat actactggat tagataaggc cttaaaaaat
    19381 gtaaataagt ctgcatctga tgccagtaaa gaaatcaaag agattgacag agccttgaaa
    19441 tttgacccag gtaacgttgt cttgcttgga cagaaacagg aactcttggc aaaacaagtt
    19501 tccaacgcca aagaaaaact tgaaactctg aagactgctg aggagcaggt ccaaaagcaa
    19561 tttgcagaag gaaagattgg cgaagagcag tatcgagcat ttcaacgtga ggttgaagtt
    19621 acccagaatg tgctgaaagg ctatgagaac aagctagaga atgtcaatca agcattggca
    19681 gggaatgcag atgcagtcca aaacaatgct cagactatga aaggcttgca ggaagagacg
    19741 aacaatctct tgaaggctga tttgctgaat gacttctctg gaatgattgc cgatgcctct
    19801 caacaactga ttgattttgg tcaaaactca cttgaagctt ttcgcactgt tgacgaggga
    19861 atggacacca ttgtgactaa gacgggtgct ggtggacaat ctcttgagga aatgcagaac
    19921 atcgcttcaa atcttgcaac gacaattccg actgatttca caacggcagg aagtgcagtt
    19981 ggcgaagtaa atacccagtt cggattgatg ggagatgctt tgcagaccac cgcagcggac
    20041 atgattaagt ttgcagaaat caatggtacc gatgtgacct ctgccacaca gacttcgaaa
    20101 caggcattgg aagcctatgg gctatctgtt gattatcttt cagatgtgtt ggacagtgct
    20161 acctacgtcg ctcaaaatac gggtgtttca gttgacgact taatgaaaaa ggctgttgat
    20221 ggagcaccac aaatcaaggc attaggattg agttttgatg aaggtgtttc actcattggt
    20281 aagtttgaaa aagctggtgt ggattcatct gctgcattaa gttccatgtc taaggcagcc
    20341 gttgcttatg ccaaagatgg gaagaccctt caagaaggtc ttaacgatac tgtcacagct
    20401 attcaaaatt catctagtga gacagaggct ttgacattag catcggaagt tttcggctca
    20461 aaggcagccc ctcgcatggt tgatgcaatc aagcgtggta ctctgaattt gaatgatttg
    20521 ggagcggctg ctgaggaatc agctggaact gtaagcagta catttgatgc cacgttggac
    20581 ccgattgaca aatttacaac cgctcaaaat atgagcactg aggcaatggc tgaaattggt
    20641 ggcatgattg cggaagttgt tgctccagct ttggaaagta tggcaaggat tttcaaatcc
    20701 gttgcacagt gggttgggaa tttgccaggg cctataaaga cagcgattgt ggcttttggt
    20761 gggattgttg caattgctgg tctattatta ccaattatag ttggtattgt aacagtcttg
    20821 ccgacaatga tgggattttt agccggaatt gcaggagcgg ctgcacctat tattgctcca
    20881 gttcttggaa ttgtaggggc aattgccgca ctaatagcaa ttatcacata tttgtggaac
    20941 aataacgaag ccttccgaac agcagtaatc gaaatttgga atgcgattat gttggttatc
    21001 aatgctgtta ttcagcagat ttcagctttt gtcatgtcca tttggggaac cttggttacc
    21061 tggtggaccg aaaatcaaga gctgattaag tcctccgcag aaatagtctg gaatgccatc
    21121 atgtctgtca ttaacacagt catgacagcc ctacagccac tcattcaagc cgcttggtcc
    21181 aatatccaac tagtcatcga gacagtctgg acagtcatca aaacaattgt agaaacaaca
    21241 atcaacactg tacttggcat catcaaggcg gttatgcagg cgattaacgg tgactggtct
    21301 ggcgcatggg agactatgag aggtgttgtc gatggaatta tcaatgcaat caaatccatc
    21361 attgagacag ttctcacagc tattcagcaa ttcattcaaa cgacttggca agcgattgtg
    21421 acttacatcc aattcgtact taacatgatc ttcaacattg tgtcgacgat ttggaatagt
    21481 atattgtcat ttatcggcaa catagtaacc tcgatttcaa atacgatttc aaatgtattt
    21541 aacggaatat cgagcacaat cagcggtgta atgtctggca ttttcaatac tgtaagtagt
    21601 gtttggaacg gcatcaaaga taccattact aacaccatta acggtgccag ggatgctgtt
    21661 tccaacgcta tcaatgcgat aaaaggcttc tttaactttg aatggtcgct ccctagacca
    21721 aaactaccac gatttcatat cagtggcggt gaagcaccat gggggttcgg tggcaagggg
    21781 tccttgccgt ctattgatat tacatggttt gcgaaaggtg gtattttgac caagcccact
    21841 attttcggca tgaatagtaa tggtttgatg ggtggcggcg aggctgggaa agaagctgtt
    21901 ctaccactga acgaaagtac acttggcatg attgctgatc atatcatgtc aactgtcaaa
    21961 gataagattg ttgtgaatgt ggaacaacca cagccacaac caattatttt aaatatcgac
    22021 ggtaaaacat tcgctcaatt gattgtaggg catgtgtcag atgcacaagc acaacgtatt
    22081 caaatcatcg aaggaggtgg gacagttggc taaacactat ggtattcgat acaacggcag
    22141 gcattcgttt gaagatgaag gcctgctttt gctgaacgaa cggtcaatca gcattcccaa
    22201 caagaagaag gtattggtgc caattccatt ctccaatgaa aaatatgatt tttcaacagt
    22261 ctatggcggc cagctctatg aacagagaac cttgacctat caaatcaaaa tcaagaatac
    22321 aatttatggt acgaaagaag ccatgaatat ggctaaaacc aatgtaatca attggttgat
    22381 gggaacaaca ggcctatcac ctctctatga tgatgcgata cctggatact acttcttggc
    22441 cgaggtccaa ggcgatagtg ctttcgagga agattgggct catggtgtgc ttaaaatcac
    22501 attcacagcc tatcccttca tgatttccga aagggctgaa ggtagcgaca tctgggatga
    22561 ttttaatttt gagcttgacg cattccaaga tattgctttt gaagtcaaag gctcacttga
    22621 tattctgttg gtcaacacag gcatcagctt agcacggcca gagattacgt cgaccagcaa
    22681 catgacattg actatgagga atcaacaatt cagcattatt ccaggaagtc gtgtatatga
    22741 ctttttcaca ctcgaaaaag agaatgaaat tcgcattgaa ggaaatggca gaatttcttt
    22801 caaatggttt aaggagctga tttgatgtat gcagttagtt tgataaacgg tgccaacgtg
    22861 acaccaatac acgactcaat ggctggtggg aataagctct tgtcggccat tgttaaattt
    22921 gagatcaata agattgccca gtttgacttc caatttttgc caaataacgc tggctacaag
    22981 gctcttatca agcctttaca gaccatggtc caagtaatca atatgcggac tggcagagag
    23041 gtattctacg gacgtatcgc accgattacg aacgatatgg cagaaagtgg agtgtttaca
    23101 ttcgcctaca atgccaagtc ggaactggat tttttgaacg acagcaagca acggcaacag
    23161 atctaccgtg ggaagaaatc tgattttgta aagcaggtcc tgcaatttca caatgacaac
    23221 ttggaatctt ataaggaatt tttgccaggc gatttatcag atttgatcgc aacaggcgac
    23281 cacatggaag ctgatgtaga ccctgcgaag tcgactttcg ctaccttgac agacctcgtc
    23341 ctaaatgagt atggactgga actacagatt cgcaaggaaa atggcaagag gtaccttgac
    23401 tttaagagac agattggtgt cgacagcgac acggaaatca agctctctgt caacttgttg
    23461 tcgctcaagc aacacatcaa cccagagggc attgtgtcac gcttactggt ctacggtaag
    23521 caaaatagcg agacaaatca gcgagtcaac attgcatccg ttaacaacgg gaaagactac
    23581 atcgatagac cggacttgat tgccgagtac ggcataaaaa tggaaactgc cacgtttgat
    23641 gacatagagg accctgttgc tctaaaacaa gcaggcgaga gccaactggc tacacaaaag
    23701 gctgtagcct atcaatactc ggtatcggca gtcaacttgt cgcatatcaa cccaaatttt
    23761 gatgagtttg aagaaggtaa cagatatagg gttatcaatc ccgtcatgtt tattgacgaa
    23821 cggttgagag ttgttgcacg gcagattgac ctggtaagcg ttgagcgatc gaatttgacg
    23881 attggcgaca agtttaagtc tgctgaagag tggcaattgg acaatgtccg aagaaggacc
    23941 aagcaactag tcacgactag gcagctaaaa gagcaacaga gccagttgga agaggtacga
    24001 gtcattgcca gtacgactgc agaaacagtc gaaactgtca gcacagccgt ctcagtacaa
    24061 tcaagccagc tattgtcagc tcaagataag cagaaattag attatctgct cgtaaccaaa
    24121 gaaatcaatc tggatgaatt gataacaaga gtagaggcat tagaaaggaa atgataaatg
    24181 ggaattgata accacttaaa agtaattaaa gaaggtgtct ttggccgtga tgtccgacaa
    24241 gccattcatg acggaatcca gcaagcgtat gatgatgcaa cggccaatgg taacgccaac
    24301 atggaagtag ctaaggcgag gggaacagca gtgacactcg gagatcgttt gcagacaatg
    24361 gatggcaaaa ttagtcaaac aacgactgac atcacacgca cagaggcccg cattgatgat
    24421 ttgattgcta atgcaggcaa tggcacggtg ccgtctgaac ttacagatat gcgcattggt
    24481 tatgatggaa caggttttaa aacagctggt gaggctatgc gcactcaatt tctcgaatta
    24541 aacaatgatt tagataccgc agctgagaat ataggattag ttagacctaa tctgttaaat
    24601 gtcgaaggac aaaacagaac gaataacggc ataacatgga catttaatct tgatgggaca
    24661 gttattgtta acggaacagc tacatataat gagtacaata aaacaaccat cactctctcc
    24721 gctggcgagt actatgtttc tggtgcgcca cttggatcac aaacgaatac gtatcatatt
    24781 atgtatacta acgggccgag tggtgcaagc gacgtatttt ttgagatagg taacggatcg
    24841 acattgatac taagtaaaga tacaagtata gacttttaca taagaattat gaataaaaca
    24901 acagttaaca atgttgtatt caagccaatg attgcaaaaa aagcatatgg taggttaccc
    24961 tacttaccgt ataaaaagtt atttcagatt tcgcctccca cttcatctaa ttggtcgggg
    25021 gcagttgcaa attttattgg agattcaata actcatgggg cgtatggaaa ttacgttgat
    25081 ggagtgaaaa cgaggctggg gttgtctgtt gctcgcaatt atggaatagg gggatgctta
    25141 atggcaagct ctagcgaaga tcagcgctat agaccagtag ttaaccgttg gaacgaaatg
    25201 gaggaggcag atattatttt tgtattcgca ggtacaaatg attattcgca tcaagttcca
    25261 atcggcgatg ccacatcaac cgatataacc acatttaacg gtgcactaaa tacaattatg
    25321 gatggattga gaaataaata tccagataaa ttggtgattt ttagctcaat tttgcatagg
    25381 tacaacgata attcattgcc aataaaagtt gattcttacc gcgaagcaat aagagagagg
    25441 tgtgaagcaa agcagtttat attttatgat atctatcgca acagtgggtt tgattttgta
    25501 agaggatatt atgacaaagt gttaacaacg gatggattgc atccaaataa aaagggggca
    25561 gagattcttt cacgaaaaat tgcagcattt attaattgtc agtagttttt acgaggaggt
    25621 ctaacattgc caatcgaaca cgcagaacga atagctcaaa gccaagtggc ttgggctatg
    25681 taaattaaaa taataaagga gtgtcaaatg tattttctaa ctatccaacc gcatccacat
    25741 gggatgtttg atttcctacg cgaacttatt gcaacagagg acggcctggt cctctttttg
    25801 cttgggctaa tcgtcgttat ggaaattgtt gatttcttat ccggcacgtt cgccgctatg
    25861 attaacccag acatcgaata caagtctaaa atcggtatta acggcctgat tcgcaagatg
    25921 atgggtatta tcctgctgac agtcttaatt ccaatgtcgg tgcttctacc tgagcaaaca
    25981 ggtgtagctt tcctatacac aatctatgtt ggctatctca tcttgacctt taagagtttg
    26041 gtcgaaaact atggcaaggc caaaggtgac acatcaattt tcgaaaatgt gacagcagca
    26101 tttgaaaagc tgattggaaa aggcaaatga aactaatcaa agcaatcctg attattattg
    26161 ttttgggagc tatgacacct attttgtggg tgctagctcc tttttatctc gaagaaggag
    26221 gaaatcatga caatcaatct tgaaacatca attcgttgga tgaacgatcg tgtcggcaaa
    26281 gtcacttact ctatgaacta tcgtaacggt ccgaatagtt atgattgctc aagcgctgta
    26341 tattatgcgc taatggcggg tggtgcaatt tctgcaggtt gggcggttaa cactgagtat
    26401 atgcatgact ggttgatacg taacggatat gttttggttg ctgaaaataa accatttaat
    26461 gctcaaagac atgatgtttt tatttggggt aaacgtggtt attcaagcgg tgaaggtgga
    26521 cacactggga tatttgtaga taatgtcaac attatccatt gtaattttaa acgcaatggt
    26581 attactattg atgattacaa taaagtatct cgtggtatgt attactatct atatcgccca
    26641 gcaaatcaac ccagcatcag caacaaatca ttggatcagc ttgttaagga gactttggct
    26701 gggggacatg gcaacgggga cacccgtaag gcaagtctgg gcagtcaata tgaggctgtc
    26761 atggcggtta tcaatggcaa agcttcggca agcgagaaat ctgatgagga acttgctagg
    26821 gaagtcttag caggtaagca cggggctgga gaggaccgaa aacggtcact aggaccacgc
    26881 tatgagcctg ttcaagctaa ggtcaacgaa ttgctcaagg ccaaggaaaa accgtctgag
    26941 gtggtcaaaa atgagccaca gacggtgcaa ttcaaggagg acggggactt gtctttcaat
    27001 ggtgccattc ttaagaagtc tgtcctcgaa attatcctga aaaagtgtaa agaacatgac
    27061 atcttaccaa gctatgctct gacgattctg cactatgagg ggctttgggg gacttctgct
    27121 gtcggtaagg ccgacaacaa ctggggcggt atgacctgga ctggccaagg caaccgtcca
    27181 agaggtgtag ttgtgactca aggtttggct cggccatcga acgagggagg ccactacatg
    27241 cactatgcaa gcgtagatga cttcttgacg gactggttct acctgcttcg caagggcggt
    27301 ccttacaatg tatctggcgc actgaccttt agcgagtccg tcaagggtat gtttcaggtt
    27361 ggtggtgcta aatacgacta tgcagccgct ggctacaata gttacctggt cggtgctact
    27421 agcaggctga aagctattga gtcagaaaat ggtagtctga cacggtttga tgccacatca
    27481 aacaacgtcc attcggttga tcctgataaa atttctgttg atattgaagg tattgaggtc
    27541 acgatcaatg gtgtagttta taagctggag aaaaagccag tgtaaaaatg agccctcagc
    27601 gattgctggg gcttttcttt ttgtcaaaaa acgaaaaaca tttgtaaaaa atacgtgttt
    27661 gtagttgaca agtgttgaaa acaagtgtat aatataatta aagataagga aaggagataa
    27721 gccaatgacg gagcgagagc tcaagaagat tgctaagaag caaggtttca gtaaaacaaa
    27781 ctttggcaaa gggtctcacg aggtttggaa acatccagac ggacggacag tgacgatacc
    27841 taaacccaaa gagaaggatt acagacctgg tacactgaac aatattctca aagtcttgta
    27901 tggggagtga gggcactcct ccctgtaccc ctaaaggggt tactctgatc attggcttga
    27961 tctatcacta tgaaatataa ttatttagca ttgtttgaag cagataagga aaatggtggc
    28021 tacagcattt ctttccctga tttccctgga gcatttagcg aagctgacaa tctaagcgaa
    28081 gctattttca acgctcgtga agttcttgaa atctatacca tcatgtttga agacgagggt
    28141 aaagaatttc ctaaaccat
//
LOCUS       DASGAC010000008        27256 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.008, whole genome shotgun sequence.
ACCESSION   DASGAC010000008 DASGAC010000000
VERSION     DASGAC010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 27256)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27256)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27256
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.008"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            138..590
                     /locus_tag="U1335_000300"
     CDS             138..590
                     /locus_tag="U1335_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM5230815.1"
                     /translation="MDFRTRIDNQIFGVRATGLVVQDEKLYLVKSPEGKYYTLGGAIQ
                     LGETTEEAVQREMQEEIGIDVEVGPLAFIVENQFTLQEKSYHQIEFLYIVTPLSNPAT
                     NLEEGNSVRQCEWVTFADLEKLDLNPAFLKTELANWDGQLKHFMNKDN"
     gene            607..1050
                     /locus_tag="U1335_000301"
     CDS             607..1050
                     /locus_tag="U1335_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM5230816.1"
                     /translation="MPVKLIAHVLLTVADSHLIIQRSQIKCGKTNVFPRYWDIPGGRV
                     EENELPRDAAVRECFEETGILIEKENLTIIHEDSQFDIEKQTVFTRLVYEVTLSEQPK
                     TILLDPEEHTDFLWLAPSDKNKKNLVPYLDEILEKRGMNGFQNQS"
     gene            1028..1489
                     /locus_tag="U1335_000302"
     CDS             1028..1489
                     /locus_tag="U1335_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEM5230817.1"
                     /translation="MDFRTKVDNQIFGVRATALIIKDGKIFLTKDSKGRYYTIGGAIA
                     VNETVQDAVVREVKEELGIDSRVNQLGFVVENQFTHEGIDFHNIEFHFIVEPIGEMPE
                     KMIEGKLKQTCEWIALDNLVNLDVVPAFLAEELPNWSGQVKHIMNMKEKTT"
     gene            1486..3402
                     /gene="mnmG"
                     /locus_tag="U1335_000303"
     CDS             1486..3402
                     /gene="mnmG"
                     /locus_tag="U1335_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011999579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEM5230818.1"
                     /translation="MTHTFAENYDVIVIGAGHAGVEAGLAASRMGCKTLLATINLDMV
                     AFMPCNPSIGGSAKGIVVREIDALGGEMGRNIDKTYIQMKMLNMGKGPAVRALRAQAD
                     KAEYAAEMKRTVERQENLTLRQTMIDEILVEEGKVIGVRTATNQKFSAKAVVVTTGTA
                     LRGEIIIGDLKYSSGPNNSLASITLADNLKELGLEIGRFKTGTPPRVNARTINYEDTE
                     IQPGDEKPNHFSFLSKDEDYLQDQIPCWLTYTNATSHEIINSNLHRAPMFSGIVKGIG
                     PRYCPSIEDKIVRFADKERHQLFLEPEGRNTDEIYVQGLSTSLPEDVQQDLIHSIKGL
                     ENAQMMRTGYAIEYDMVMPHQLRATLETKKISGLFTAGQTNGTSGYEEAAGQGIVAGI
                     NAALKVQGKPELILKRSDGYIGVMIDDLVTKGTVEPYRLLTSRAEYRLILRHDNADMR
                     LTEIGRQVGLVDDERWQVFQIHKNQFDNEMKRLESIKLKPIKETNEKVVAMGFKPLTD
                     ALTAKEFMRRPDVTYADAVAFIGPAAEDLDAKTIELIETEVKYEGYIAKALDQVEKMK
                     RMEEKRIPADIDWDDIDSIATEARQKFKLISPETIGQASRISGVNPADISILMVYLEG
                     RSRSISKNKSKDSH"
     gene            3483..5444
                     /locus_tag="U1335_000304"
     CDS             3483..5444
                     /locus_tag="U1335_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEM5230819.1"
                     /translation="MKRFRFSTIHFVMIGVILFGLVALVHRFFPIGASTVFALLISLL
                     VLIALFIYQKHSYEFSEIEQIEYLNNQANSGLMMLLDKMPVGVIKVRPDSNQVEWFNP
                     FAELIFAQENGEFDQKKLREIIDVGLDEERIYANFSGKRYAVNVDFDQGLFYFFDASS
                     EYSATNSLIGSRPVIGIISVDNYDELEDTVSDSQISQVNSFLAQFVSEFCHDYGIYYR
                     RGTMDRFYFFTDYAVLEKLIENKFSVIDKFREEAKKLDLGLTLSMGLAYGNENHHQIG
                     QVALQNLNMAEVRGGDQVVVKENDESKQPLFFGGGSASSVKRTRTRTRAMMSAVSDKL
                     KSVDAVFVVGHRNLDMDALGSAVGMQYFAQNIMNNAYTVYNPDEMAPDIARAIKKLSD
                     ENCSNLLTVEEAMKMVTFQSLLIMVDHSKIGLTLDKDFYEQFTQVVVVDHHRRDTDFP
                     NNAVLTYIESGASSASELVTELIQFQNDKHHKLNRIQSSLLMAGVMLDTKNFTSRVTS
                     RTFDVASYLRTRGSDSLEIQQIAATDFEEYRQINELILRGERIESNVVIACADDTKEY
                     DNIIPSKAANTILDMAGIEAVFVVTRNTKGYVSISARSHSKINVQRIMEEMGGGGHFN
                     LAAAQVYDQTIAEVYEKLTDKIREEINGN"
     gene            5455..5907
                     /gene="rplI"
                     /locus_tag="U1335_000305"
     CDS             5455..5907
                     /gene="rplI"
                     /locus_tag="U1335_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEM5230820.1"
                     /translation="MKVIFLADVKGQGKKGEIKEVPTGYAQNFLIKKNLAKEATTQAI
                     SALRGQEKSKAKAHAEMVAEAEAIKAKLAEEATLVKFVEKVGPDGRTFGSITSKKIAE
                     ELEKQFGIKIDKRHIQLDHPIRALGLIDVPVKIYQDVTGVINLSIKEA"
     gene            5941..7296
                     /gene="dnaB"
                     /locus_tag="U1335_000306"
     CDS             5941..7296
                     /gene="dnaB"
                     /locus_tag="U1335_000306"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEM5230821.1"
                     /translation="MAELDELRVQPQDILAEQSVLGAIFLDEGKLVFVREYIEAEDFF
                     KHAHKLIFKAMIALSDRNEAIDATTMRNYLVNHGDLENIGGLAYLAEIISSVPTAANA
                     EFYAKIVAEKSNLRKLIARLTDAVNQAYEGADGSDDIIANAEKALIDVSEGASRSGFK
                     RIDDVLNINFDNLETRAKQTSDITGIATGYPALDAMTTGLHEEELIILAARPAVGKTA
                     FALNIAQNIGTKLGLTVAIFSLEMGAESLVDRMLASEGVINSRSIRTGHLTQEEWNKY
                     MVAQANLARASIYIDDTPGIKITEIRSRSRKLAQETGNLGLILIDYLQLITGTGRENR
                     QQEVSEISRQLKILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIV
                     AFLYRDDYYERGEQEDGGIPNNTVEVIIEKNRSGARGTVELMFQKEYNKFASISKRED
                     G"
     gene            7300..7551
                     /locus_tag="U1335_000307"
     CDS             7300..7551
                     /locus_tag="U1335_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001278154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Veg family protein"
                     /protein_id="HEM5230822.1"
                     /translation="MSDAFTDVAKMKQIKQDIKEHEGQIVELTLENGRKREKNKQGRI
                     IEVYQSLFIVEFEDPNNTFVESYTYSDILTEKILIHYLD"
     gene            7690..8385
                     /locus_tag="U1335_000308"
     CDS             7690..8385
                     /locus_tag="U1335_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HEM5230823.1"
                     /translation="MEFQWFTVLALFAEGLLSFLSPCVLPILPIYVGLLAGGAEGKEG
                     EKKVLVNTLSFVVGIALTFFLLGFASSLLSRVLQANAQVLQIVSGLLIVLMGILQLGW
                     FNIPMLEREFSAKNKVYQAGKQVTPFLAFLMGFTFSFSWTPCIGPILASVFIYASSQQ
                     GWLSSILLLVYCLGFILPFILVAFFSQKMLAFFKNNRHYLAWTKRISGYLLLLIGLSI
                     LTGFFQHLVRFFQ"
     gene            8404..8967
                     /locus_tag="U1335_000309"
     CDS             8404..8967
                     /locus_tag="U1335_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEM5230824.1"
                     /translation="MKKLVSIVVCLLVSCFVLTACSLLPLVSPSSTESTLQANQPVTL
                     DFSLKDKDGKDVNLADYKGKKIYINVWATYCGPCQREIPELEEVYQEYKDKEDYVFLS
                     ITSPKDAEFANTNPADVSKDEILEKASELGATYPVLFDTKDQAMTHFGIAAFPTHILI
                     NSDGTLKVSFAGQVQKDKLVELLEEMQ"
     gene            9278..9889
                     /gene="rpsD"
                     /locus_tag="U1335_000310"
     CDS             9278..9889
                     /gene="rpsD"
                     /locus_tag="U1335_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014407971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEM5230825.1"
                     /translation="MSRYTGPSWKQARRLGLSLTGTGKELARRNYVPGQHGPNNRSKL
                     SEYGLQLAEKQKLRFSYGLGEKQFRNLFVQATKIKQGTLGFNFMLLLERRLDNVVYRL
                     GLATTRRQARQFVNHGHILVDGKRVDIPSYRVEVGQVISVREKSIKVPAILEAVEATL
                     GRPAFVSFDAEKLEGSLTRLPERDEINPEINEALVVEFYNKML"
     gene            9955..10404
                     /locus_tag="U1335_000311"
     CDS             9955..10404
                     /locus_tag="U1335_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEM5230826.1"
                     /translation="MWRKYFLLVLIAILVVGGAFFLSQSATTPNESDYVKAVKSYQTI
                     SIDEVEQKVQDEEEFILYIGRETCPYCRDFVPKLTEAVEQSRVTIYYLDSESDPNGKI
                     QQFRQSQGLATVPSLTYYKSGKLSGILRKGSQATLSEIENFLAPQGQ"
     gene            10532..12049
                     /locus_tag="U1335_000312"
     CDS             10532..12049
                     /locus_tag="U1335_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavocytochrome c"
                     /protein_id="HEM5230827.1"
                     /translation="MKKKAWLGLLMSLLAVLFLVACGGKSEKTATSSSSTTSSSSEEA
                     VSGASEKVYTDPSELKDSYDVIVVGSGGAGMSAAISAKDAGASVALLEKMPVVGGNTA
                     KSSAGMNASQTKFQEAEGIADTNDKFYEETLKGGKGTNDPELLRYLVDNSASAIDWLD
                     GMGITLSNLTTTGGMSEKRTHRPADGSAVGGYLVNGLYHNLVEREVPIFVNADVTKLQ
                     DKDGAVTGVEVKIAGETKKISAKAVVLATGGFGADLEMVAKLNPALKGYVTTNQEGST
                     GDGIALAESEGAATVDMEQIQIHPSVEQETSYLITEAVRGEGAILVNSKGERFVNELE
                     TRDKVSAAINSLDPNYAYVIFDDALKDRVKAIAQYEEKGLVKTGATLADLAKEIGVPA
                     DALQTTLDTWNKAVADKNDAAFSRTSGMDHTLNTGSYHAIKVAPGVHHTMGGVKINTN
                     TEVLKADGSAISGLYAAGEVTGGVHGQNRIGGNAVADIIVFGRQAGEQAAGFAKK"
     gene            12135..13487
                     /locus_tag="U1335_000313"
     CDS             12135..13487
                     /locus_tag="U1335_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEM5230828.1"
                     /translation="MKKKIVLLLGAIAVIVLIWSAIAGQRQQSYAEAELRDQDKIWII
                     TDLHYLSQDLFDDGEAFSYIEKTAAGKDLRYGKERMEALVEQVEREHPSLLLVSGDLT
                     LNGEKQSMVELAQYFTEIEEQGTEVLVIPGNHDIASGWARAFKGDQQIVTDQVTAQQF
                     AELFANHGYQQASSRDQASLSYLAKPFSNAWFLMIDSNIYSDGYGKGAPPTNGRIKKE
                     TLEWIEVQLRSAKEAGVSLIPVVHHNVLQQHAMLTKGYTLDNAADLKALFNQNGIRFG
                     FSGHTHAQNIVEEDLGQARYTEVVNGAFSIYPAIIGQLSLDDTSIHYQKTQLDMASWT
                     EKHQPSDPNLQDHVTYLQTVFDHTSDIMVHNMLNDEGWYDGETADAISQFIMPANRAY
                     FSGEKLDQTWLNEKVFSSQAYQTLQAASPRSFLADYLDVIIKRSQSRDVEKLEITTQN
                     "
     gene            13630..14643
                     /locus_tag="U1335_000314"
     CDS             13630..14643
                     /locus_tag="U1335_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5230829.1"
                     /translation="MTLLSIAIPSYNSEAYLHYCVHSLVMGGDKVEILIINDGSTDRT
                     QEIAEGLENQFSNVRAIYQDNKGHGGAVNTGIREAKGKYFKVVDSDDWVDTRAYLKIL
                     ESLQALEDENTPVDAFISNFVYEKEGQSRKKSMSYQDVLPENRIFGWEDVGAFSKGQY
                     MMMHSLIYRTDLLREVGLVLPEHTFYVDNIFVFTPLQAVKTMYYLPVDFYRYFIGRND
                     QSVNESVMIKRIDQQLKVNRILVDNLDLEAIDNPDLRSYLLNHVEITTIISCALLNRA
                     GTAEHMLKKQELWHYIRDNNPALFKIVRKGLLGQLTNLYGYPGRKISNAVYKIAKRIY
                     GFN"
     gene            14713..15624
                     /locus_tag="U1335_000315"
     CDS             14713..15624
                     /locus_tag="U1335_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM5230830.1"
                     /translation="MQRLGQTGLEVSRIGLGCMRMASLSEQETAKVLKTVVGQGINFF
                     DHADIYGGGESEIRFAQGAKLAGLKREDLLLQSKCGIRKGYFDFSKEYVLESVDGILK
                     RLDTEYLDVLALHRPDALMEAEEVAEAFYLLKKAGKVHHFGVSNQNVHQMELLQSYLD
                     QPLAVNQLQLSPAHTPLIDAGLHVNMKDDAATMRDGGLIDYCQLKKITIQAWSPFLID
                     LQRGIFANHPDYALLNQTIGEIAERYNVSHETIVVAWILRHPAKIQTIVGSMNPERLT
                     KIAQASQITLTRPEWYEIYRSAGNILP"
     gene            15634..15720
                     /locus_tag="U1335_000316"
                     /pseudo
     CDS             15634..15720
                     /locus_tag="U1335_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638825.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            15932..16306
                     /locus_tag="U1335_000317"
                     /pseudo
     CDS             15932..16306
                     /locus_tag="U1335_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638825.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            16401..18152
                     /gene="aspS"
                     /locus_tag="U1335_000318"
     CDS             16401..18152
                     /gene="aspS"
                     /locus_tag="U1335_000318"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEM5230831.1"
                     /translation="MKRSMYAGRVRKEHVGQEITLKGWVGRRRDLGGLIFIDLRDREG
                     IMQLVINPESVEAEVMAKAESLRSEFVIEVTGTVVEREQANDNIPTGAVELQVTSLTV
                     LNTAKTTPFEIKDGIEASDDTRLRYRYLDLRRPEMLNNFKLRAAVTHSIRNYLDDLEF
                     IDVETPMLTKSTPEGARDYLVPSRVSKGHFYALPQSPQITKQLLMNAGFDRYYQIVKC
                     FRDEDLRGDRQPEFTQVDLETSFLNEVEIQDIVEGLIAKVLKDTKGIDVTLPFPRMAY
                     DHAMNFYGSDKPDTRFEMLLQDLTELVKEVDFKVFSEAPVVKAIVVKGAADSYSRKDI
                     DKLTEYAKQFGAKGLAWVKVDKGELAGPVAKFLTGITANLTASLQLEDKDLVLFVADE
                     LEVANNTLGALRNRLAKEQGLIDDSKFNFLWIVDWPMFEWSEEEGRHMSAHHPFTLPT
                     EETAHHLDGDLAQVRAVAYDIVLNGYELGGGSLRINQKDMQERMFKALGFSAEDAHEQ
                     FGFLLEAMDYGFPPHGGLAIGLDRFVMLLAGEDNIREVIAFPKNNKASDPMTQAPSTV
                     ASAQLEELALDITLENE"
     gene            18145..19077
                     /locus_tag="U1335_000319"
     CDS             18145..19077
                     /locus_tag="U1335_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM5230832.1"
                     /translation="MNKFFRKQRIRLIRMARKNKFWSVILGISREKYAERISGSIIYG
                     LLSSIAVNFFFRPGNVYSSGVTGLAQIVSALAASYAGWNVPIAVVYYGLNIPLLILAW
                     YKIGYKFTIFTFITVSFSSFFIQFMPPVTLTTDPLVNAIFGGLMLGTGIGFALRNNVS
                     SGGTDIVSIIIRKKTGRQVGVISLIVNILIMLIAGMTFGWQYALYSMVALFISSRMTD
                     AIFVKQKRMQAMIITNQPERVIKKIHKKLNRGVTIINGAEGAYNHEQKTVLITIITRA
                     EFSEFKQIMKKADPQAFVSVADNVNIIGRFVESD"
     gene            19154..19606
                     /gene="nrdI"
                     /locus_tag="U1335_000320"
     CDS             19154..19606
                     /gene="nrdI"
                     /locus_tag="U1335_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class Ib ribonucleoside-diphosphate reductase
                     assembly flavoprotein NrdI"
                     /protein_id="HEM5230833.1"
                     /translation="MKKKIYLVYISLSGNTESFVKRLKSFFQFQTDWEIELVHVKDLV
                     KQDIPFYQLDAPFVAFLPTYLEGGNGVDNGDVEILTNPLGDFIALGTNAELCLGVVGS
                     GNRNFNNQYCLTAKQYAERFNFPVIDTFELRGMQNDIERIGRKIMELM"
     gene            complement(19759..21810)
                     /gene="pulA"
                     /locus_tag="U1335_000321"
     CDS             complement(19759..21810)
                     /gene="pulA"
                     /locus_tag="U1335_000321"
                     /EC_number="3.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pullulanase"
                     /protein_id="HEM5230834.1"
                     /translation="MALRQFQAFLDDVATIRLVMEKRFDSEHTSFSLESNDATSQLFI
                     HSCLEVENLVIYYLTSLHALTLDKDYTIYDQDRNKAELGYGHIVRSTLFEQSYTYNGQ
                     DLGATYRPEATTFKLWAPISKQVFLVLEGNPHAMTKGAKGVWEITVEGDLEAHSYHYL
                     HKVNGEWISVHDPYALSSTANSGDSYVINPDKLHKIRRAKTQRPISQAIIYEMSVRDF
                     SWQKEAGFKHRSQFLGLTESPTMDGMKLGMDYIRELGVTHIQLLPVYDFGSVDENKPQ
                     AVYNWGYDPMQYNLPEGSYSSQPNDPYARILELQEAIQAYHDADISVIMDVVYNHVYH
                     AEKYAFELIVPGYFYRYDDHGMRTDGTFCGNDVASERSMVRNYIKQSLRQWLELYGFD
                     GFRFDLMGILDSETINQIQTELSAIHPNVYLYGEGWKMATGLEFEKLAHQYNAEQLPE
                     ISFFNDDYRDTFKKLLLNPNRLVDKQLHEKVQHLLTGSRLSHFLTPQQSLNYIECHDN
                     ATAFDYFHIENPNWTPQQQKRAASFGLQLILISQGMAFIHSGQEFFRTKDEIDNTYNV
                     PDRINRLDWTRAIRYKEHIEFIQELITFRKNNPILSQDNYESIQETCDFYWLTEYVLR
                     YQVTSEEKTIQFIINFADSDFTYEREKDKAVLYNYPPVGERDQQEITIAGQSICILED
                     K"
     gene            complement(21834..22817)
                     /locus_tag="U1335_000322"
     CDS             complement(21834..22817)
                     /locus_tag="U1335_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5230835.1"
                     /translation="MRATIKDVAKLAGVSPSTVTRVIQNSSAISQKTKDLVRKAMADL
                     NYHPNLNARSLVSSYTQVIGLVLPDDSDVFYQNPFFPTALRGISQVAADHNYAIQIST
                     GKNEEQRLEAISQMVYGKRVDGLIFLYSKPDDPLVQLAIQHKFPFLILGKADSPFISL
                     VDNDNIQAGFEATNYFINKGYKNIAFVAGNKELVVSQDRYTGYKNALKSHNIPLDENK
                     VKFVSGFLLEDSAYKISKKLLKQELDAIVTTDTSVAEGVVKYLNEVGVKLPIISFDSV
                     KPKLDIEAYVDVHAIKLGRVAFNTLHQIISDNKEDKQVCYRRVIPHTITEL"
     gene            complement(22827..23609)
                     /locus_tag="U1335_000323"
     CDS             complement(22827..23609)
                     /locus_tag="U1335_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230836.1"
                     /translation="MLPYPFSYFSSIFSPRNMFANRRLMNLWQRLFTTLFLVALLLIP
                     SSLQTVNLETYPLENFVEGIYAPLTDQVVDDLRQHAVIENNHLTYTGNTNWEQVTFGD
                     TVSSSSDFTYQFANQSLTIRKGSDILSELTYEGLNTDDFASKETLTATISKKWYQANR
                     AAVGLSITLISTFILTTNLLFILLGASFFLFLTKKSRFFHFETFAECYNFALNCLGLP
                     TLIACLIGLFGQPVTTLLTIQNILFVLCLLWVFFKTKFRDEI"
     gene            complement(23669..24511)
                     /locus_tag="U1335_000324"
     CDS             complement(23669..24511)
                     /locus_tag="U1335_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001065636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5230837.1"
                     /translation="MKVSVKTRRILNQTLTYLYLIVLSVIIIYPLLITIMSAFKSGNV
                     VAFKLDSNINFTLDNFSKLFSETLYGTWYLNTLIIALLTMVIQTSIVVLAGYAYSRYN
                     FIARKQSLVFFLIIQMVPTMAALTAFFVMALMLNALNQSWFLIFLYVGGGIPMNAWLM
                     KGYFDTVPISLDESAKLDGAGHFRRFWQIVLPLVRPMIAVQALWAFMGPFGDYILSKF
                     LLREKEFYTVAVGLQTFISDVKNMKIAYFAAGAILIALPISILFFFLQKNFVSGLTSG
                     GDKG"
     gene            complement(24513..25808)
                     /locus_tag="U1335_000325"
     CDS             complement(24513..25808)
                     /locus_tag="U1335_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003027817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5230838.1"
                     /translation="MTMKQNPGKALLLSLIPGLGQIYNKQKAKGYIFLGVTLAFLVYF
                     IAIAAGELGNLITLGSVRGQDNSLFMLIRGSFHLIITVVYLAFYALNLKDARDTAKRW
                     NSGMPVATTLKEMVKGIYENGFPYLLIIPSYIAMTFAIIFPVVVTLFIAFTNYDFKHL
                     PPGALLDWIGITNFTNIWKLSTFRTAFGSVLGWTIIWALCASTAQIVIGILTAIIANQ
                     PFIKGKRIFGVIFLLPWAVPAFVTILTFSNMFNDSVGAINTQVLPFLSKFLPFIDNFL
                     IPWKTDPFWTKVALIMMQAWLGFPYIYVLTLGILQSIPNDLYEAAYIDGASAIQKFRN
                     ITLPMILAVAAPTLISQYTFNFNNFSIIYLFNNGGPGSVGGGAGSTDILISWIYKLTT
                     GTSPQYSMAAAVTLIISMIVISISMIAFKKLNAFEMEDV"
     gene            complement(25915..27174)
                     /locus_tag="U1335_000326"
     CDS             complement(25915..27174)
                     /locus_tag="U1335_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM5230839.1"
                     /translation="MKHNLLKSVALLAASTAVLAACSNSGSSTEASKSAEGSKELTVY
                     VDQGYESYINDVKADFEKENGVTVTVKTGDALTGLDNLSLDNQSGSAPDVMMAPYDRV
                     GSLGSEGQLSELTLADDSKADDTTTALVTNGGKVYGSPAVIETLVLYYNKDLLTEAPK
                     TFAELETLAKDSKYAFEGEAGKTTAFLADWTNFYYTYGLLAGYGGYVFGENGTDPKDI
                     GLANEGAIKAIEYAKTWYEKWPQGLQDGTAANNLINTQFTDGKAAAIIEGPWKAASYK
                     EAGVNYGVATIPTLVNGKNYSAFGGGKAWVVPTGAKNQEMAQKFVDFLTATDQQKALY
                     DATNEVPANTEAREYAVSKNDELTTAVINQFASAQPMPNISEMGSVWTPAGNMLFEAA
                     SGAKDAKTAATDAVKAIADEIAQKHSN"
BASE COUNT         7879 a         4985 c         6437 g         7955 t
ORIGIN      
        1 aggtttgaac tttagaagca gatttgatac aatattccta acaagaacta tgatggtcaa
       61 agctcatggg aattgtaggt ttttttgtcc tgcaattttc gagagttttg gctatttttt
      121 gcgattgggg agagaagatg gattttagga ccagaattga caatcaaatc ttcggtgttc
      181 gtgcgacggg cttggtggta caagatgaga agttatatct tgttaagtcg cctgagggga
      241 aatattacac cttaggtgga gctattcagc ttggcgaaac aaccgaagag gctgtgcaac
      301 gggaaatgca agaagaaatc ggaattgatg tggaggttgg accactagca tttattgttg
      361 aaaatcagtt caccttacag gagaaatcct atcatcagat tgaatttctc tatatagtta
      421 ccccactgtc taatccagct accaatctgg aagaagggaa ttctgttcgc cagtgtgaat
      481 gggttacttt tgcggactta gagaaactgg atctcaatcc agcctttctt aagaccgagt
      541 tagccaactg ggacggacaa ctaaagcatt ttatgaacaa agacaactaa agtagcggag
      601 gaaaccatgc ctgttaaatt gattgcccat gtcttgctga ctgttgcaga cagtcacctg
      661 attattcagc gttctcagat taagtgtggc aaaaccaatg tctttcctcg atattgggac
      721 attccaggtg gtcgtgttga ggagaatgag ttgccccgtg atgctgcagt gagagagtgt
      781 tttgaagaaa caggtatttt gatagaaaag gaaaatctga ctattattca tgaagatagt
      841 cagtttgata tagagaaaca gacggtattt acaaggctgg tctatgaagt gacactttct
      901 gaacaaccaa aaaccattct tcttgaccca gaagaacata cagattttct ctggttagcc
      961 cctagcgata aaaataagaa aaacttagtt ccatatctgg acgaaatttt agaaaagaga
     1021 gggatgaatg gatttcagaa ccaaagttga caaccagatt ttcggtgttc gtgccactgc
     1081 attgattata aaagatggga aaatatttct cacgaaggac tctaagggcc gttattatac
     1141 cattggcggt gcgattgcag tcaacgaaac tgtgcaagat gcggttgttc gagaagtcaa
     1201 agaagaatta gggattgaca gtcgtgtcaa ccaactgggt tttgttgtcg aaaatcaatt
     1261 tacacatgaa ggcatagact ttcacaatat cgagtttcat tttatcgtgg agcctattgg
     1321 agaaatgcct gagaagatga ttgaagggaa gttgaagcaa acttgtgaat ggattgcact
     1381 tgacaacctt gtcaacctag atgtagtacc agcttttctg gcagaggaat tgccaaactg
     1441 gagtggacaa gttaaacaca ttatgaacat gaaggagaaa acaacatgac acacacattt
     1501 gcagaaaact atgatgtcat cgtgattgga gcggggcatg cgggtgtaga agctggcttg
     1561 gcagccagcc gcatgggctg taagaccttg cttgcaacta ttaacttgga tatggtggcc
     1621 tttatgcctt gtaatccctc cattggtggc tctgccaagg ggattgtggt aagagaaatt
     1681 gatgccttgg gtggcgaaat gggtcgcaac attgacaaga cctatatcca gatgaagatg
     1741 ctcaatatgg gcaaggggcc agctgttcgt gccttgcggg ctcaggcaga taaggcagag
     1801 tacgcagcag agatgaagcg gacggtggag cgtcaggaaa atctgaccct gcgtcaaacc
     1861 atgattgatg agattttggt ggaagagggt aaggtgatcg gtgtccgtac ggctaccaac
     1921 cagaaattct cagccaaggc ggtcgtagtg acaactggta ctgccctacg tggtgagatt
     1981 atcatcggtg acctcaagta ttcgtcaggg cctaacaata gtctggcttc tatcacgttg
     2041 gcggataact tgaaagaatt gggacttgaa atcggtcggt tcaagacagg aacgccaccg
     2101 cgtgtcaatg ctcgtaccat taactacgaa gacacggaga ttcaaccagg tgatgaaaag
     2161 ccaaatcact tttcattctt gtccaaggat gaggactatt tgcaagatca aattccttgc
     2221 tggttgacct acaccaatgc gaccagccat gagattatca acagcaatct tcacagggca
     2281 cctatgtttt caggcattgt caaggggatt gggccccgtt attgtccgtc tattgaggac
     2341 aagattgtcc gttttgccga caaggaacgc caccagcttt tcctagagcc agagggtcgc
     2401 aatacagacg aaatctatgt ccaagggctg tcaactagtc tgccagaaga tgtgcagcag
     2461 gacttgattc actctattaa aggcttggaa aatgctcaaa tgatgcggac gggttatgcc
     2521 attgagtacg atatggttat gcctcaccag ttgcgggcga cgcttgaaac caagaagatt
     2581 tcagggctct ttacagcagg tcagaccaac ggaacatcag gctatgaaga agcagcaggt
     2641 cagggaattg tcgctggtat caatgcagcc ctcaaggtgc agggcaagcc tgaattgatt
     2701 ttgaaacgaa gtgacggtta tatcggcgtt atgattgatg acctggtgac caagggaacg
     2761 gtggagcctt accgcctctt gaccagtcgg gcagaatacc gcttgattct gcgtcatgac
     2821 aatgctgata tgcgactgac ggagattggt cgtcaggttg gcttggtaga tgatgaacgc
     2881 tggcaggtct tccagattca caaaaaccaa tttgacaatg aaatgaagcg tttggagtct
     2941 atcaaactca agccaatcaa ggaaaccaac gaaaaagttg tagctatggg cttcaagccc
     3001 ttgacagacg ctctgactgc caaggaattc atgcgtcgtc cagatgtgac ttacgcagat
     3061 gcggtagcct ttatcggccc agcagcagag gacttggacg ccaagaccat tgaattgatt
     3121 gaaacagagg tcaagtacga gggctacatt gccaaggcct tggatcaggt ggagaagatg
     3181 aaacgtatgg aagaaaaacg cattccagca gacattgact gggatgatat tgactccatt
     3241 gcgaccgagg ctcgtcagaa attcaagcta atttcaccag aaaccattgg ccaagctagt
     3301 cggatttccg gtgtcaatcc agccgatatt tccattctca tggtttatct ggaaggacgt
     3361 agtcgttcca tttctaaaaa caaatcaaag gacagtcact aaggctgttc ttttcttatg
     3421 cgtgctagcg aaaactagca atttcttgtg atttatggta gaatggcagg cagaggttag
     3481 tgatgaaaag atttcgattt tcgacaattc actttgtcat gataggtgtc attttatttg
     3541 ggttggtggc tcttgtccac cgattttttc caattggtgc cagtacagtt tttgcgctac
     3601 tcatcagcct attggtgttg attgcgctgt ttatttatca aaaacattct tatgaattta
     3661 gtgagataga acagattgaa tatctcaata atcaggccaa ttctggtttg atgatgctct
     3721 tggataaaat gccagtggga gttatcaaag ttcgaccaga tagtaatcag gtagaatggt
     3781 ttaatccctt tgctgagctg atttttgctc aagaaaatgg tgagtttgat caaaaaaaac
     3841 tacgtgaaat tattgacgtt ggtctggatg aggagcgaat ttatgcaaac ttttcaggca
     3901 agagatacgc tgttaacgtt gattttgatc aagggttatt ttactttttt gatgcttcat
     3961 cagagtactc agcgacaaat agtttgatcg gaagccgtcc tgttataggg attatttcag
     4021 ttgataatta tgatgaactc gaggacacgg tatctgattc acagattagc caagtcaatt
     4081 ccttcttggc tcaatttgtt tccgaatttt gccatgatta cggtatctac tatcgacgcg
     4141 gcacaatgga tcgattctat ttctttacag attatgctgt gttggaaaaa ttgatagaga
     4201 ataagttttc agttattgat aagttccgcg aggaggctaa aaagttagat ttaggtttga
     4261 ctttgagcat gggattggcg tatggtaatg aaaatcatca ccaaatcgga caggttgcgc
     4321 tccaaaatct caatatggct gaggttcgtg gtggagatca ggttgtggtc aaggaaaatg
     4381 atgagagtaa acagccactt ttctttggcg gtggctcagc ttcttccgtt aaacgaacac
     4441 gtacgcggac tcgtgctatg atgtctgctg tatcagataa actcaaatcg gttgatgctg
     4501 tttttgtggt gggacatcgt aatttagata tggacgcgct tggatccgcg gtcggtatgc
     4561 agtactttgc tcaaaatatt atgaacaatg cctatacggt gtataatcca gatgaaatgg
     4621 caccagatat tgcacgtgct atcaagaagt tgagtgatga aaattgttct aatttgctaa
     4681 cggttgagga agccatgaag atggtcactt tccagtcgtt gttaatcatg gtagatcatt
     4741 caaagattgg cttgactttg gataaggatt tttatgaaca atttacccag gttgtggtgg
     4801 ttgatcatca tcgtcgcgat acagatttcc caaataatgc agttttgact tatatagaga
     4861 gtggtgctag ttctgcgagt gagttagtaa cggaattaat tcagttccag aatgacaaac
     4921 accataaact taatcgtatt caatctagtt tattgatggc tggggttatg cttgatacaa
     4981 aaaatttcac ctctcgtgtg actagtcgta cttttgatgt ggctagttac ttgcggactc
     5041 gtggtagtga tagcttggaa atccagcaga ttgctgcgac agattttgag gaatatcgtc
     5101 aaatcaatga gttgattttg cgtggggaga gaattgagtc caatgttgtt attgcgtgtg
     5161 cagatgatac taaagaatat gataatatta ttccgagcaa ggctgccaat acaatattgg
     5221 acatggcagg aattgaggcg gtattcgttg taacaagaaa taccaaaggg tatgtatcta
     5281 tttctgcaag gagtcatagt aaaatcaatg ttcaacgcat catggaagaa atgggtggag
     5341 gtggccactt taacctagct gccgctcagg tatatgacca gacaatcgca gaagtatatg
     5401 aaaagttgac ggataaaatc cgcgaagaaa taaatggaaa ttaggagaac agatatgaaa
     5461 gttatctttt tggcagatgt aaaaggtcag ggaaaaaaag gcgaaatcaa ggaagttcca
     5521 acaggttatg cccaaaactt cttgattaag aaaaatttgg ctaaggaagc tacaacacaa
     5581 gcaattagtg ccctacgtgg acaagaaaag tctaaagcta aagctcatgc ggaaatggtt
     5641 gctgaagcag aggctatcaa ggctaagttg gcagaagagg ctactttggt aaaatttgtc
     5701 gaaaaagttg gtccagatgg tcgtacattt ggttcgatta ccagcaagaa aattgctgaa
     5761 gaattggaaa aacaatttgg tattaagatt gacaaacgtc atatccaatt ggaccaccca
     5821 attcgtgccc ttggtttgat tgatgttcca gtcaaaattt atcaagatgt gacaggtgtt
     5881 atcaatttga gcattaaaga agcttagaag agttatcatt gtcagtgagg aggtgaaatc
     5941 ttggcagagt tggatgaatt gcgggtgcaa ccgcaggata ttctggctga acagtcggtc
     6001 ttgggagcta ttttccttga tgaaggcaag ctggtcttcg ttcgtgaata cattgaagct
     6061 gaagattttt tcaaacatgc tcataagcta atttttaaag ctatgattgc tctttctgat
     6121 agaaatgagg caattgatgc gactaccatg cgtaactatt tagtgaacca tggtgatttg
     6181 gaaaatatcg gtggtttggc ctacttggct gaaattatca gttccgtacc gacggcagcc
     6241 aatgcggaat tctatgccaa gattgttgct gaaaagtcta atctccgtaa actgattgcc
     6301 cgtttgacgg atgcagttaa tcaggcttat gagggtgcgg atggttcaga tgacattatt
     6361 gccaatgctg aaaaggctct gattgatgta agcgaaggtg ctagtcgaag tggtttcaag
     6421 cggattgatg atgtcttgaa tatcaacttt gacaaccttg aaacccgtgc caaacagact
     6481 tcggatatta cagggattgc aactggctat cctgcccttg atgccatgac aacgggtctg
     6541 catgaggaag agttgattat tcttgcggct cgtcctgcgg ttggtaagac ggcttttgct
     6601 ctcaatattg ctcagaatat tggtacaaaa ttaggtttga ccgtagccat attttctttg
     6661 gagatgggtg cggagagctt ggtggaccgt atgttggctt ctgagggagt tattaattcg
     6721 cgttccattc gtacgggtca tttgacgcag gaagagtgga ataagtatat ggtggctcag
     6781 gctaatttgg cacgggctag catttacatt gatgatacgc caggtatcaa gattacagag
     6841 attcgttcgc ggtcacggaa gttggctcag gagacaggca atctgggctt gatcttgatt
     6901 gactatcttc agttgattac gggaacaggt cgggaaaacc ggcaacaaga ggtttcagag
     6961 atttcccgtc agttaaagat tttagccaag gaattgaaag ttccagttat cgccctcagt
     7021 cagttgtcgc gtggagttga acagcggcag gacaagcgac cggttctgtc tgatattcgt
     7081 gaatcgggat ctatcgagca ggatgcggat atcgtagcct tcttgtatcg tgatgattat
     7141 tatgaacgag gtgagcagga agacggcggc attccgaata atacagttga agttatcatc
     7201 gagaaaaacc gttccggtgc gcgtggtacc gtggaattga tgttccaaaa agaatacaat
     7261 aaatttgcaa gtatttccaa gagagaggat ggatagagaa tgagtgatgc atttacagat
     7321 gttgctaaaa tgaagcagat taagcaggat attaaagagc atgagggtca gattgtggaa
     7381 ttgacccttg aaaatggtcg caagcgtgag aagaataagc aaggacgaat tattgaggtc
     7441 tatcagtccc tctttatcgt agagtttgaa gatccaaaca atacttttgt agaatcctac
     7501 acttactcag atattttgac agaaaagatt ttgattcatt atttggatta gaaatgggag
     7561 cctgtgattg caggcttttt tgtatgattt aacaaaacga tatattgacc aaggtgaagt
     7621 agtgtgttat aatattagta cataaaacgc tttcaaaatt atttttatac tagatagaaa
     7681 ggagtttata tggaatttca atggtttaca gttctggctc tgtttgcaga aggactcttg
     7741 tctttcttat caccctgtgt actgccgatt ttacccatct atgttggttt attagcaggt
     7801 ggagctgagg ggaaagaggg agagaagaag gttctcgtca atacgctaag ttttgtagtt
     7861 gggattgctc tgaccttctt cttattggga tttgcctcta gtttgctgag tagggtctta
     7921 caagcaaatg ctcaagtctt gcagattgtc agtggtctat tgattgttct gatgggaatt
     7981 ttgcagttgg gttggttcaa tattcctatg ttagagcgtg aattttctgc taaaaataag
     8041 gtgtaccaag caggaaaaca ggtcactcca tttctagctt tcctgatggg ttttaccttt
     8101 agtttttctt ggactccatg tattggacct attctagcat ctgtttttat ttatgctagc
     8161 agtcagcagg gttggttgag cagtatcttg ctgttggtct attgtcttgg ctttattctt
     8221 ccctttattt tggttgcctt cttttctcag aaaatgttgg ctttcttcaa gaacaatcgg
     8281 cactatttgg cttggaccaa gcgtatttca ggctatttat tgctcttgat aggcttgagt
     8341 attttaacag gtttcttcca acatcttgtg cgttttttcc agtaggatag aaaggatttg
     8401 tttatgaaaa agttggtatc gattgtcgtt tgcttacttg tttcttgctt tgttttgact
     8461 gcctgttccc ttttaccatt ggtcagtccg tcttctactg agtcgacttt acaggcaaat
     8521 caaccagtca cgctagattt ttccctaaag gataaggatg ggaaggatgt caatctagca
     8581 gattataagg ggaaaaagat ttacataaat gtttgggcaa cctattgtgg tccttgtcag
     8641 agggaaattc ctgaattgga ggaagtttac caagagtaca aggataagga agattatgtt
     8701 ttcttgtcta tcacgtcacc taaggatgct gagtttgcga ataccaatcc tgcggatgtg
     8761 agcaaggatg agattttgga gaaggctagt gagttaggag cgacctatcc agtcttattt
     8821 gataccaaag atcaggcgat gacacatttt ggtattgctg cttttccgac acatatcctt
     8881 atcaatagtg atgggaccct caaggtttct tttgcaggac aggttcaaaa ggataagctg
     8941 gttgaattat tggaagaaat gcaataagaa cgatgaaaaa ggctttacag agcctttttt
     9001 ttgtgctata ctaacctttg tgcgaaataa cagcagggca aaatgaagct cgtcaacaga
     9061 aggtcagcaa gaagagtaat cgttgctgtt tcgatgaagg cctcctgcac gaatcaggtt
     9121 tgcttaaaac gttatttcct acagacaagt ctttttgttt ccttttagta ctaggcaagg
     9181 aggtgcaggc tatactgagg tatgccaagc cgacttaacg acgtaataaa agagaaacga
     9241 aatgacggaa atttttattt ttaggaggac ataacacatg tcacgttata caggaccatc
     9301 ttggaaacaa gctcgtcgtc ttggcttgtc attgacaggt acaggtaaag aattggcacg
     9361 tcgtaactac gtaccaggtc aacacggacc aaacaaccgt tctaaattgt cagaatacgg
     9421 tttgcaattg gctgagaaac aaaaattgcg tttctcttac ggtttgggtg aaaaacaatt
     9481 ccgtaacttg ttcgtacaag ctactaaaat caaacaaggt actcttggtt tcaacttcat
     9541 gcttcttttg gagcgtcgtt tggacaacgt tgtttaccgt cttggtttgg caactactcg
     9601 tcgtcaagca cgtcaattcg taaaccacgg tcatatcctt gttgacggca aacgcgttga
     9661 catcccttca taccgcgttg aagttggtca agtgatctca gttcgtgaga agtcaatcaa
     9721 agttccagct atccttgaag ctgttgaagc aactcttgga cgtccagctt tcgtatcatt
     9781 cgatgctgaa aaacttgaag gttcattgac tcgcttgcca gaacgcgacg aaatcaaccc
     9841 agaaatcaac gaagctcttg tcgtagaatt ctacaacaaa atgctctaag atttgtattg
     9901 atattttaaa agccctattt acaagggctt tttgtctgta ttttaggagg gattatgtgg
     9961 cgtaagtatt ttttgctagt gctaatagct attttggtcg taggtggggc cttctttcta
    10021 tctcaatcag cgactacgcc aaatgaatca gactatgtga aggctgtaaa gagttaccag
    10081 actatttcga tagatgaagt ggagcaaaag gtccaagacg aggaagaatt tatattatac
    10141 ataggtcgtg agacatgccc ttattgtcgt gattttgttc cgaaattaac agaggcagta
    10201 gagcaatcac gtgtgactat ctactatttg gatagcgagt cggatccgaa tggaaaaata
    10261 caacaatttc gacagagtca aggtcttgct acggttccta gcttaaccta ttataaatcg
    10321 ggtaaattat ctggaatact ccgtaaaggg agtcaagcaa cgctatccga aatagagaat
    10381 tttttagctc ctcaagggca gtaaatagtt ttaagaatgt atgaagcgaa tatcatacat
    10441 ttttatgttt gtgaaaaatg tttcaaaata aattgaaaaa catttcacaa tcttgtataa
    10501 tactaatatc agataaaaat tggaggttta tatgaaaaag aaagcttggt taggcttgtt
    10561 gatgagtcta cttgctgttt tatttttagt ggcgtgtgga ggcaagtctg aaaagacagc
    10621 tacatcttca tcatctacga cttcttcttc atcagaagaa gctgtttcag gtgcatctga
    10681 gaaagtttat acagatccat ctgagttgaa agatagctac gatgttatcg ttgttggttc
    10741 aggtggtgca ggtatgtcgg cagctatctc agctaaagac gctggtgcta gtgttgctct
    10801 cttggagaaa atgcctgttg tcggtggtaa cacggctaaa tcatcagctg gtatgaatgc
    10861 ttcacaaacc aaattccaag aagcggaagg tattgctgat acaaacgata aattctacga
    10921 agaaacgctt aaaggtggta aagggacaaa cgatcctgaa ttgcttcgtt atcttgtaga
    10981 taactctgct agtgcaattg actggttgga tggaatgggg atcactctta gcaacctaac
    11041 tacaactggt ggtatgagcg aaaaacgtac acaccgtcct gcagatggtt cagctgtcgg
    11101 tggctacttg gtaaatggtc tttaccacaa tcttgttgaa cgtgaagtac caatttttgt
    11161 caatgcagat gttacaaaac tccaagataa agacggggct gtaacaggtg ttgaagtgaa
    11221 gattgctggt gaaacgaaga aaatctcagc taaagcagtt gtattggcga ctggtggttt
    11281 cggtgcagat ttggaaatgg ttgctaaatt aaacccagca ttgaaaggtt atgttacaac
    11341 taaccaagaa ggttcaacag gtgacggtat tgcgcttgct gaatcagaag gtgcagcaac
    11401 tgttgatatg gaacaaatcc aaattcaccc aagtgttgag caagaaactt cttacttgat
    11461 tacagaagca gttcgtggcg aaggtgctat ccttgtcaac tcaaaaggtg agcgttttgt
    11521 taacgaattg gaaactcgtg ataaagtttc tgcagctatc aatagtttgg atccaaacta
    11581 tgcttatgtt atctttgatg atgccttgaa agatcgtgtg aaagctattg ctcaatacga
    11641 agaaaaaggt cttgtaaaaa cgggtgctac tcttgcagat ttggctaaag aaattggtgt
    11701 acctgcggat gctcttcaaa caacacttga tacttggaac aaggctgtgg cagataaaaa
    11761 tgatgcagca tttagtcgca catcaggtat ggaccatact ttgaacactg gttcttacca
    11821 tgccattaaa gttgcacctg gtgtccacca tacaatgggt ggtgtgaaaa tcaataccaa
    11881 tactgaagta ttgaaagcag acggttcagc aatttcaggt ctttatgctg ctggtgaggt
    11941 aactggtggt gttcatggtc aaaaccgtat cggtggtaat gcagtagcag acatcatcgt
    12001 atttggtcgt caggctggcg aacaagcagc aggatttgct aagaaataaa ttgtagatac
    12061 aagaggctcg gcagaaagat ggtcgagctt ctttttcttg tccctctatc tctaagatga
    12121 tatactttta aggtatgaag aagaaaatag tattattgtt aggagctatt gcagtcattg
    12181 ttttgatttg gtctgctatt gctggtcagc gtcagcaatc ctatgccgag gctgaattaa
    12241 gagaccagga taaaatctgg attatcactg atttgcatta tttatcacag gatttatttg
    12301 atgatggaga ggctttttcc tatatagaaa aaacagctgc tggcaaggat ttacgttatg
    12361 gaaaagaacg gatggaggct ttggttgagc aggttgagcg tgaacatcct tccttgttac
    12421 tagtcagtgg agatttgact cttaatggag aaaagcagag catggttgaa ttagctcagt
    12481 attttacaga gattgaagaa caaggaactg aggttttggt gattcctggc aaccatgata
    12541 ttgccagtgg ctgggctagg gcctttaagg gagaccagca gatagtgacg gatcaggtca
    12601 ccgctcagca atttgcagag ctatttgcca atcacggtta tcaacaagct agcagtcgtg
    12661 accaagcctc attgagctac ctggccaaac cattttcaaa tgcttggttt ctgatgatag
    12721 acagcaacat ctactctgac ggctacggaa aaggagctcc tccaaccaat ggacgtatca
    12781 aaaaagagac cctagaatgg atagaagttc agcttaggtc agccaaggaa gctggagtga
    12841 gcctgatacc tgttgtccat cacaatgttt tgcaacagca tgccatgctg acaaaaggct
    12901 atactttgga taatgctgcc gatttgaagg ctttgtttaa tcagaatggt attcgttttg
    12961 gtttttcggg gcacactcat gctcagaata ttgttgaaga agacctgggt caagctcgct
    13021 atactgaagt ggtcaatgga gcattttcta tttatccagc tattatcggt caattgagcc
    13081 ttgatgatac aagcattcac tatcaaaaaa ctcaacttga tatggcttcg tggacagaaa
    13141 agcaccaacc tagtgatcca aatttgcagg atcacgttac ctacttacaa actgtatttg
    13201 atcataccag tgacatcatg gtgcacaata tgttaaacga tgaaggttgg tatgatggtg
    13261 agacagcaga tgctatttca caatttatca tgccggccaa ccgtgcttat ttttcaggag
    13321 aaaaactaga tcagacttgg ctaaatgaga aggtattttc aagccaggct tatcagacct
    13381 tgcaagcagc atcaccgaga agtttcttgg ctgattatct tgatgtgatt ataaaacgga
    13441 gtcaaagtcg agatgtggaa aaactagaaa ttaccaccca aaactaataa tagttatcca
    13501 cagaaacgca aagaaatcca caacttatcc acaacttgtg aataagtttg tttttaaaaa
    13561 taattgtgct ctgcaacttt cctgaaaata tgataaaata gtaacaaatt gtgtcaaatg
    13621 gagagaaaga tgaccttact aagcattgct attccgagtt acaattcaga ggcctacctt
    13681 cattactgcg ttcattccct tgtgatgggt ggtgataagg ttgaaattct gattattaac
    13741 gacgggtcga ccgatcggac tcaggaaatt gcagaggggc tagagaatca attttcaaac
    13801 gtacgtgcca tttatcagga caataagggc catggcggag ctgtcaatac agggattcgt
    13861 gaggctaagg gtaagtactt taaagttgta gattcagatg actgggtcga taccagggcc
    13921 tatttgaaga tcctagagag tttgcaggct ttggaagatg aaaatacgcc agttgatgcc
    13981 tttatctcca actttgttta tgaaaaagag ggacaatctc gcaaaaaatc catgtcttat
    14041 caggatgttt taccagaaaa tcggattttt ggctgggaag atgtgggggc attttccaag
    14101 gggcaataca tgatgatgca ttccttgatt tacaggacag atttgctacg ggaggttggt
    14161 cttgttctgc cagagcatac tttctatgtg gataatattt tcgtatttac ccccttacaa
    14221 gcagtgaaaa cgatgtacta tcttccagtc gatttttatc gttactttat tgggcgaaat
    14281 gaccagtctg tcaatgaatc cgtcatgatt aagcgcattg accagcagtt aaaagtcaat
    14341 cgaattttgg tagataattt agacttggag gcgattgaca atcctgattt gcgaagttac
    14401 ctgctcaatc atgtggagat tacgaccatt atctcctgtg cccttctcaa tcgtgctgga
    14461 acagctgaac acatgttgaa aaagcaggaa ctctggcact atattcggga taataatcca
    14521 gctctattta aaatcgttcg aaaagggtta cttggtcaat taaccaacct ttacggttat
    14581 ccaggtcgaa aaatttccaa tgccgtctat aaaatcgcga aaagaattta tggttttaac
    14641 taaaactcag tttcggctga gtttttctat tataataagg aatatgaaaa gcgtttacaa
    14701 gggagaagat aaatgcaaag attaggacaa acaggattag aagtttcacg aattggtcta
    14761 ggctgtatgc gaatggctag tttgagcgag caggaaacgg ctaaggtctt gaaaacagtc
    14821 gttggacagg gaatcaactt ttttgatcat gcggatattt atggtggtgg tgaatcagaa
    14881 atccgttttg ctcaaggggc aaaattggcg ggattgaaac gtgaggacct gcttctccaa
    14941 tcaaaatgtg gcattcgtaa aggttatttt gatttctcaa aagagtatgt tttggaatct
    15001 gtggatggga ttttgaagcg cttggatacg gaatatttag acgttctcgc cttacaccgt
    15061 ccggatgctc taatggaagc agaggaagtg gcagaagcct tttatctctt gaaaaaagca
    15121 gggaaggttc atcattttgg cgtcagcaac caaaacgttc accaaatgga gttattacaa
    15181 tcctatctcg atcaaccgct tgcagttaat caattgcagc tatctcctgc tcacacgcct
    15241 ttgattgatg ctggattaca tgtcaatatg aaagatgatg ctgcgactat gcgtgatggt
    15301 ggactgattg attattgcca gcttaaaaaa atcactatcc aagcctggtc tcctttcttg
    15361 attgatttgc aacgaggtat ttttgccaac catcctgact atgctctttt aaatcagacc
    15421 attggggaaa tagcagagcg atacaatgtt tcacatgaaa caattgtcgt agcttggatt
    15481 ttgcgtcatc cagcaaagat tcaaacgatt gtgggttcta tgaacccaga acgcttgaca
    15541 aagattgctc aagcgagcca gattacctta acgagaccag aatggtatga gatttacaga
    15601 agtgcaggga acattttgcc ctaggaggaa tgtatgaagt gggaaataaa agcatttgac
    15661 caacttagtt tacaggaact ttacactatc ttgacacttc ggcccgatgt atcagtcatt
    15721 tagtttttct tttattactt cgacggacga ggaaactccg tttccttatt tccaacttca
    15781 aacactccac tggagtgttt gaactcactt taccgtactt tgtagaagta acttgcttcg
    15841 caagtgctat atccaacctt gtacagtcac tcgactgtac aagcagcttg cagctcgttg
    15901 cctcgtacta aaagtaaact aaaagactta atttgtgctt gaacaagcct gtccctatcc
    15961 tgaaattgat ggaaaagatc caagttgtct tcatctttta ggaacagaca atggggagtt
    16021 agtggcttac ttgagaatct taccagctgg tttaagttat gatgaagttt ccatcggtcg
    16081 tgtggtcatc aagccaagtc atcgtggcaa aggattgggt cggccaatga tggagcaagc
    16141 tatcgcttac attacaaccg agtggaagga aagtcagatt aaaatcgggg cccaagccta
    16201 tttggaaaaa ttctatcaat cgcttggctt cgaaccgatt tctgaagtat atttggagga
    16261 tgatatccca catttggata tgttataccg taaaccagtc aactagggct ggtttttcga
    16321 tttttctcgg caatttctcc caaaaatcag ccattttatg gtagaatgaa taggtataaa
    16381 atcagtaaaa gaggaagaaa atgaaacgtt ctatgtacgc tggacgtgtt cgtaaggaac
    16441 atgtcggaca ggaaattact ttgaaaggtt gggttggccg ccgtcgtgac ttaggtggcc
    16501 tgattttcat tgacttgcgt gaccgtgaag gcattatgca attggtgatt aaccctgagt
    16561 cagttgaggc tgaagtgatg gcaaaagctg agagtcttcg ctctgaattc gttatcgaag
    16621 taacaggaac ggttgttgag cgtgagcaag ctaacgacaa tatcccgaca ggagctgttg
    16681 aactgcaagt aaccagcttg acagtgttga acacagctaa gacaactcca tttgaaatca
    16741 aggatggcat tgaagccagc gatgacactc gtcttcgtta ccgttatttg gatcttcgcc
    16801 gtccagaaat gctcaacaac ttcaaattac gtgcagcggt aacccacagc attcgcaatt
    16861 atctggatga cttggaattt atcgatgtgg aaacaccaat gttgaccaag tcaacaccag
    16921 aaggtgcgcg cgactacttg gtaccatctc gtgtgtccaa aggtcatttc tatgctttgc
    16981 cacaaagtcc acagattact aagcagcttt taatgaatgc tggtttcgac cgttattacc
    17041 aaatcgttaa gtgtttccgt gatgaagatt tgcgtgggga tcgtcaacct gagtttacac
    17101 aggtggactt ggaaacctca ttcttgaatg aggttgaaat ccaagacatc gtagaaggct
    17161 tgattgctaa ggtcttgaaa gataccaaag gaatcgatgt gaccttgcca ttccctcgta
    17221 tggcctacga ccatgctatg aacttctatg gttcagacaa gccggatact cgttttgaga
    17281 tgcttttgca agacttgaca gaacttgtca aggaagttga cttcaaggtc ttctcagaag
    17341 caccagttgt caaagcaatt gtggtcaagg gtgcggcgga tagctactca cgtaaagaca
    17401 ttgataaatt aacagaatac gccaaacaat ttggtgctaa gggacttgct tgggttaaag
    17461 tagacaaggg agaattagcg ggcccagttg ctaaattctt gacaggtatt acagcaaact
    17521 tgacagcgag tttacagctg gaagacaagg atttagtcct ctttgtagcg gatgagctgg
    17581 aagttgccaa caataccttg ggagccttgc gtaatcgctt ggctaaggaa cagggcttga
    17641 ttgacgacag caagttcaac ttcctctgga ttgtggattg gccaatgttt gagtggtcag
    17701 aagaagaagg acgccacatg agtgcccacc acccattcac cttgccgacg gaagaaacag
    17761 ctcatcattt ggatggtgat ttggcgcagg tgcgtgcagt tgcttacgat attgttttga
    17821 atggttatga attgggtggc ggtagccttc gtatcaacca aaaagacatg caagaacgga
    17881 tgttcaaggc gcttggcttc tctgctgagg atgcccatga gcagtttggt ttcttgctag
    17941 aagctatgga ctacggcttc ccaccacatg gtggtttggc tattggtttg gaccgctttg
    18001 tcatgttatt agctggtgaa gacaatattc gtgaagtcat cgcctttccg aagaacaaca
    18061 aggcatctga tccgatgaca caagcaccga gcacggttgc atcagcacaa ttagaggaat
    18121 tggctttaga cattacactt gaaaatgaat aaatttttca gaaaacagcg aatacgcttg
    18181 ataagaatgg ccagaaagaa taagttttgg tcggtcattt tgggaatttc tcgggaaaaa
    18241 tatgctgaac ggatatcggg gtccattatt tatggactcc tatctagtat tgcagtcaat
    18301 tttttctttc gaccagggaa tgtctattcg tctggagtta ctggtcttgc acagattgtt
    18361 tctgctctgg cagcttctta cgctggttgg aatgtaccga ttgcggtggt ctactacggc
    18421 ctgaacattc ccttgctcat tttggcttgg tataaaattg gttataaatt tactatcttt
    18481 acctttatta cggtatcctt cagttctttc tttatccaat ttatgccgcc agttaccctg
    18541 acgacggatc cgttagtcaa tgctattttc ggtggtctca tgctcggtac aggaattggc
    18601 tttgcactta ggaataatgt atccagtggt ggtactgata ttgtctctat tattattcgc
    18661 aagaagacgg gacgtcaagt tggagtcatt tccttgattg tcaacatcct gattatgttg
    18721 attgcaggga tgacctttgg ctggcaatat gccctgtatt caatggttgc gctgtttatc
    18781 tccagccgca tgacagatgc gattttcgtg aaacaaaaac ggatgcaggc tatgattatt
    18841 accaatcaac cagaacgagt tatcaaaaaa atccataaaa agctaaatcg cggtgtgacc
    18901 attatcaacg gtgctgaggg tgcttataac catgagcaaa aaacggttct gattaccatt
    18961 atcacacgtg cggagtttag tgagtttaag caaattatga aaaaagcaga tcctcaagcc
    19021 tttgtatcgg tagctgacaa cgtcaatatt attggtcggt ttgtggaaag tgactgattg
    19081 acaaacacta catgtaggag taaaatagta tttacagtct acatgtagtg tttttattat
    19141 aaagaggaaa tgtatgaaga agaaaatata tttggtttac atcagtttga gtggcaatac
    19201 agagagtttt gtgaaacgtc taaagtcttt tttccaattt caaactgact gggagattga
    19261 actggtccat gttaaagatt tggtcaagca ggatattcct ttctatcagc tagatgcacc
    19321 ctttgtcgcc tttttaccaa cctacttaga aggtggaaat ggagtggaca acggagatgt
    19381 ggaaattctg accaatcctc tcggagattt tatcgctttg gggaccaatg cagagctctg
    19441 tctgggtgtc gttggctcag gtaaccgcaa ttttaacaac caatattgtc tgaccgccaa
    19501 gcaatatgct gagcgattta attttcctgt tatagacacc tttgaactca gaggaatgca
    19561 gaatgacatt gaacgcattg gtcggaagat aatggaattg atgtaaagag cctcaactca
    19621 gctttatgct gggttgtttt tttggtcaca caaaaaaact caccagagtg accagtgagt
    19681 tttaaggaga ttatgaaaaa tatttaggat tgactatagt atacctcaga ctatatcgtg
    19741 tttcatcggt ctaaagtcct atttgtcttc taaaatgcaa atactctgtc ctgcaatcgt
    19801 gatttcttgc tgatcacgct ctccgactgg aggatagttg tagagaactg ccttatcttt
    19861 ttcacgttca taggtaaagt cgctatccgc aaagttgatg ataaattgaa tggtcttttc
    19921 ttcacttgtc acttgatagc gaagaacata ttcagttaac cagtagaaat cacaagtttc
    19981 ttggatactt tcgtagttat cctggctgag tattggatta tttttgcgga aggtaattaa
    20041 ttcctgaatg aactcgatat gttccttata acgaatagct cgtgtccagt ccagacggtt
    20101 gatacggtca gggacattgt aagtattatc tatttcatct tttgtacgga aaaattcttg
    20161 tccactatga ataaaggcca taccctgaga aatcaaaatc agttgaagtc caaagctagc
    20221 agcacgtttc tgctgttgag gtgtccagtt tggattctca atatggaaat agtcaaatgc
    20281 tgtagcatta tcatggcatt cgatgtagtt gagggactgt tgaggcgtta agaaatggct
    20341 taatcggcta ccagtcagga gatgttgtac cttttcgtgc aattgcttat ctactagacg
    20401 gtttggattg agcaagagtt tcttaaaggt atcacggtaa tcgtcattga agaagctgat
    20461 ttcaggtaac tgctctgcat tgtactggtg agccagcttt tcaaattcga ggcctgttgc
    20521 cattttccat ccttcaccat agaggtagac atttgggtga atggcagata attcagtttg
    20581 aatctggttg attgtttcgc tatctaaaat acccataagg tcgaaacgga agccatcaaa
    20641 accatagagt tctagccatt ggcgaaggga ttgtttgatg tagttgcgga ccatactgcg
    20701 ctcgctggca acatcgttac cgcagaatgt cccgtctgtt cgcatgccgt ggtcatcata
    20761 gcgatagaag tagcctggaa cgatgagttc aaatgcgtac ttttcagcat gatagacgtg
    20821 gttgtaaaca acgtccataa taactgaaat atctgcatca tggtaggcct ggatagcttc
    20881 ctgtagctct agaatacgtg cgtaaggatc gtttggttgg ctagaatagg aaccctctgg
    20941 cagattgtat tgcatagggt cgtagcccca gttgtaaaca gcttggggtt tattttcatc
    21001 cacactgcca aaatcataaa caggcaataa ttgaatatgg gtaacgccta gttctctgat
    21061 gtaatccatt cctagcttca ttccatccat ggtaggagat tctgtcaatc cgagaaattg
    21121 actgcgatgc ttgaaaccag cttctttttg ccatgagaaa tcacggacgc tcatttcata
    21181 gataatggcc tgagagatag gtcgttgggt cttagcacga cgaattttat gaagtttatc
    21241 tggattgata acgtagctgt cacctgagtt ggctgtggaa gacagggcgt agggatcgtg
    21301 aacggaaatc cattcaccgt ttactttgtg gagatagtga tagctgtgcg cttctaggtc
    21361 tccttcaaca gtaatttccc aaactccctt tgctcccttc gtcattgcat gtgggtttcc
    21421 ttctagaaca agaaaaactt gcttagaaat aggtgcccat aacttaaagg ttgttgcctc
    21481 tggtcgatag gttgctccca agtcttggcc attgtatgta taactttgtt caaaaagtgt
    21541 agagcgaacg atatgaccat agccgagttc agctttatta cggtcctggt cgtagatggt
    21601 atagtccttg tccaatgtca atgcatggag gctggttaga taatagataa cgagattttc
    21661 tacttctaga caggaatgga taaaaagttg agacgtagca tcatttgatt cgagtgagaa
    21721 gctcgtatgt tcggagtcga atcgtttttc cataaccaag cgaatagtag ctacatcatc
    21781 tagaaatgct tgaaattgtc gtaatgccat gagccgaacg gctcctttct aggttaaagt
    21841 tcagtaatcg tatgtggaat gacgcggcgg tagcagacct gcttgtcttc cttattgtcg
    21901 ctgatgattt ggtgcagagt gttgaatgcg acgcgtccta gtttaatagc gtggacgtca
    21961 acgtaggctt caatatctag ttttggcttg acggagtcaa aagaaatgat aggaagtttg
    22021 actccgactt cgttgagata tttgacaaca ccttcggcaa cggaagtgtc ggttgtgacg
    22081 attgcatcca gttcttgttt gagtaatttc ttagaaattt tataggcact gtcttcgaga
    22141 aggaagccag acacaaactt gaccttgttt tcatccaggg gaatattgtg cgatttaagg
    22201 gcgttcttgt aaccagtata acggtcttga gatacgacta actctttgtt accagcgacg
    22261 aaagcaatgt ttttgtaacc tttattgatg aagtagttgg tagcttcaaa gccggcctgg
    22321 atattatcat tatcaactag tgatatgaat ggagaatccg ccttaccaag aatgaggaag
    22381 gggaatttgt gttggatagc taattgtacc aatggatcgt cgggcttgga atagaggaag
    22441 atgaggccgt ccactcgttt gccgtagacc atctgagaaa tcgcttctag acgttgttct
    22501 tcattctttc ctgtggagat ctggatggca taattatgat ctgccgcaac ttgagaaatt
    22561 cctcgtaagg cagtagggaa gaaagggttt tgatagaaaa catccgagtc atctggcaaa
    22621 accagtccga taacctgtgt atagctagaa actaggcttc gagcgttgag gtttggatgg
    22681 tagttgagat ccgccatggc tttccgcacc aagtctttcg ttttttggct aatggcagag
    22741 ctattttgaa tgacacgagt aactgtagat ggcgagacac cagctaattt ggccacatct
    22801 ttgatggtag cacgcatata gacctcctag atttcatctc tgaattttgt tttgaaaaat
    22861 acccataaca agcatagcac aaataggatg ttttgtatgg tcagaagggt agtcacaggt
    22921 tgaccaaata gtccaattag acaggctata agagtaggca ggcccagaca gttgagagca
    22981 aaattatagc actctgcaaa cgtttcaaaa tggaagaaac gagacttttt agtcaaaaat
    23041 aggaagaagc tggctcctag taggatgaag agtaggtttg ttgttaaaat aaaggtcgaa
    23101 ataagagtga tggacagtcc gacagctgct cggttggctt gataccattt tttagagatg
    23161 gttgcagtca aggtctcctt actagcaaaa tcgtcagtat tcaaaccttc ataagtcaat
    23221 tcgcttagaa tatcacttcc tttacgaata gtcagagact gattggcgaa ttgataagta
    23281 aagtcagaac tagagctaac ggtatcacca aatgtcactt gctcccagtt agtatttcca
    23341 gtataggtta ggtggttgtt ttcgatgact gcgtgttgac ggaggtcatc tacgacctga
    23401 tctgtcagag gtgcatagat accttctacg aaattttcta aaggataggt ttcgagattg
    23461 acagtctgta gggagctcgg aatgagcaag agcgccacta aaaaaagcgt tgtaaacaac
    23521 cgttgccaaa ggttcattag tctacgattg gcaaacatat ttcttggaga gaagatacta
    23581 gaaaaatagg aaaaaggata tgggagcatt cgttgaacct ttcataaata tcaatgtttc
    23641 ccctgaaaag ggaaaaggtg ggacagggtt atcccttgtc gccaccgctt gttaaaccag
    23701 atacaaagtt cttttgtagg aagaagaata ggatactgat agggagggca ataagaatgg
    23761 cacctgccgc aaagtaggca atcttcatat tcttcacatc actgatgaag gtttgaaggc
    23821 cgacagctac agtatagaat tctttttcac gaagcaagaa tttggatagg atgtaatctc
    23881 caaaaggtcc catgaaggcc cagagcgctt gtacagcaat cattggacga acgagtggga
    23941 ggacgatttg ccagaaacgt ctgaagtgac cggcaccgtc tagttttgca gattcatcaa
    24001 gtgagattgg taccgtatcg aagtagcctt tcatgagcca agcgttcatt gggataccac
    24061 caccgacata aaggaagatg aggaaccagc tttggttgag cgcattgagc atgagggcca
    24121 taacgaagaa ggcggtaaga gcagccattg ttggtaccat ttggataatc aagaagaaga
    24181 ccaaactctg cttacgagcg atgaagttat agcgactata agcgtaaccc gctagtacca
    24241 ctatacttgt ttgaataacc attgtcaaga gagcaatgat aagcgtattg aggtaccagg
    24301 ttccgtatag agtctcgcta aagagcttgc tgaaattgtc cagtgtaaag ttgatattgc
    24361 tatccaattt gaaggcaacc acgttaccag acttgaaggc ggacatgatt gtaatcaaga
    24421 gaggatagat gatgataaca gacagaacaa tcagatagag ataggttaag gtctgattga
    24481 gtatgcgtct agtttttaca gatactttca tcttatacat cctccatttc aaaagcattt
    24541 agttttttga aggcaatcat ggaaatactg atgacaatca ttgagataat caatgtaact
    24601 gctgccgcca ttgagtattg aggtgatgta cctgtggtta atttataaat ccatgaaatc
    24661 aagatgtcag ttgaacctgc tccaccaccg acgctaccag gaccaccatt gttaaagagg
    24721 tagatgatag agaagttgtt gaagttgaag gtgtattgac tgattagtgt tggagctgct
    24781 actgctaaaa tcatcggaag ggtgatgtta cggaattttt gaatggcact tgcaccgtca
    24841 atgtaagcag cttcatacaa gtcgtttgga atggattgca aaatacctaa ggtcaaaaca
    24901 tagatataag ggaaaccaag ccaagcctgc atcataatga gggcaacttt ggtccagaat
    24961 gggtcggtct tccaagggat aaggaaatta tcgatgaatg gtaggaattt gctcaggaat
    25021 ggcaatacct gtgtgttaat agcgccgaca ctatcgttga acatgttact aaaagtcaag
    25081 atagttacga aggcaggaac agcccatggg agcaagaaga taacaccgaa gatgcgtttt
    25141 cctttgatga atggctgatt tgcgatgatg gctgtcaaga taccgataac aatttgagct
    25201 gttgaagcgc agagtgccca gataattgtc cagccaagta cagagccaaa tgctgtacgg
    25261 aatgtgctta gtttccagat gtttgtaaag ttggtaatac caatccaatc caacaaggca
    25321 cctggtggca ggtgtttgaa gtcgtagttt gtaaaggcga taaacaatgt aacgacaact
    25381 gggaagatga tagcaaaggt catcgcaata tatgatggga taatcaagag atatgggaaa
    25441 ccattctcat agataccttt taccatttct tttaatgtgg tagctactgg catccctgaa
    25501 ttccatcgtt tcgcagtatc acgtgcatct tttaggttga gtgcatagaa agcgagatag
    25561 acaaccgtga taatcaaatg gaacgaaccg cgaatcagca tgaatagtga attatcttgt
    25621 ccacgaacac taccgagggt aatcaagttg cctaattcac cagctgcaat agcaataaaa
    25681 taaacaagga aggcaagggt aacacccaaa aagatgtatc ctttggcttt ttgtttattg
    25741 tagatttgtc cgagaccagg gatcagggac aaaaggagtg ccttacctgg attttgtttc
    25801 atagtcatag tctccttata tagcttctga atagatggtc gattttatct attcagttta
    25861 tcgttaagta ataaagtaga ctgggaggaa ctcccagtcc aactttaaac ttgactagtt
    25921 gctgtgtttt tgagcaattt cgtctgcaat agctttcaca gcgtctgttg cagcagtttt
    25981 agcgtctttt gcaccacttg cagcttcgaa gagcatgtta ccagctggtg tccaaactga
    26041 acccatttct gagatgtttg gcattggttg agctgaagcg aactggttga taactgcagt
    26101 tgtcaattcg tcgtttttgc ttacagcata ttcacgagct tcagtgttag ctggaacttc
    26161 gtttgtagcg tcgtaaagtg ctttttgttg gtctgtagca gtcaagaagt caacaaattt
    26221 ttgagccatt tcttggtttt tagcgcctgt aggaacaacc cacgctttac caccaccgaa
    26281 tgctgagtag tttttaccgt ttacaagagt tgggattgtt gctacaccat agtttacgcc
    26341 agcttcttta tatgaagctg ctttccaagg tccttcgata atagcagctg ctttaccatc
    26401 tgtaaattga gtgttaatca agttgtttgc agcagtaccg tcttgaagac cttgaggcca
    26461 tttttcatac caagttttag cgtattcaat cgctttgatg gcaccttcat tagcaagtcc
    26521 gatgtctttt ggatcagtac cgttttcacc aaatacgtag ccaccgtaac cagctagaag
    26581 tccgtaagtg tagtagaagt ttgtccagtc agcaaggaag gcagttgttt taccagcttc
    26641 tccttcgaag gcgtatttgc tatctttagc aagtgtttca agttctgcaa atgtcttagg
    26701 agcttcagtc aacaagtctt tgttgtagta aagaacaagt gtttcgataa ctgctggtga
    26761 accgtaaact ttaccaccgt ttgttacaag agcagttgtt gtgtcatctg ctttgctatc
    26821 atctgcaagt gtcaattcag ataattggcc ttcagaacca aggctaccta cacggtcgta
    26881 tggagccatc ataacgtctg gagctgaacc agattggttg tccaatgaca agttatccaa
    26941 accagtcaaa gcatcaccag ttttaactgt aacagtcaca ccattttctt tttcgaagtc
    27001 agctttgacg tcgttgatat aagattcata accttggtca acgtagacag tcaattcttt
    27061 gctaccttca gcagacttag atgcctctgt tgatgaacct gagtttgagc aagcagctaa
    27121 aacagcagtt gatgcagcaa gaagagcaac gctcttaagg agattgtgtt tcattttctt
    27181 ccctccgaag ataaatagtt ttgtgtgacg tctgcatagc gcaaacgttt tcctaagttg
    27241 acttcattat acacca
//
LOCUS       DASGAC010000009        26947 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.009, whole genome shotgun sequence.
ACCESSION   DASGAC010000009 DASGAC010000000
VERSION     DASGAC010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 26947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26947
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.009"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            49..387
                     /locus_tag="U1335_000327"
     CDS             49..387
                     /locus_tag="U1335_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018365185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM5230840.1"
                     /translation="MQIQYNNKTVEKQCTNLRIAKREFSDKVAKKLHKLVNFIESADN
                     LASVIAFPTYHFHDLKGEREGEYALDIDGRRGSYRLIVCFDEEKDSVFSNAQSIRIIQ
                     IEEVSNHYGS"
     gene            377..1468
                     /locus_tag="U1335_000328"
     CDS             377..1468
                     /locus_tag="U1335_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018365186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HEM5230841.1"
                     /translation="MVHNIQNYKDLIAFHPGSYVEEIIEDLNMSQEEFAIRLGTTPKT
                     ISKLVNGEISVSKDLANKLFKLTGVSILTWLNLQASYDAKVLEIEELQNQDEKEILKL
                     IDFDYFKRHGFVPPGRYSLLQKVAELRKLFQISNLTYLSQFNQLVSYRNTKGFDERSV
                     VNSNVMLELAIKLSKDATDTKFNKSKLVKILPELREMTLKDGGEFYPMLHSKLLECGI
                     CLVGLPKLKNANLNGATKRFKNGSVLLLLTDKNKRSDIFWFSFFHELGHILHNDFYSD
                     YDDRDAYEEKEQKADQFAQEFLIPTNEYEQFVAEKSFDKSSIIRFAHEIGIHPSIVLG
                     RLQKEGFVEYSQYQELKISYNIIIRGNAV"
     gene            1571..4669
                     /locus_tag="U1335_000329"
     CDS             1571..4669
                     /locus_tag="U1335_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019771596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEM5230842.1"
                     /translation="MTDIIQTDPIIESNNFIVLDKYVKSVQPGHYQTEADLEKELIAD
                     LQQQGYEYLNYLTTPEALLGNLRAQMEMLNRVSFTDEEWQRFLDEYLNKPSESLIDRT
                     RKLHDDHVYDFIFDDGHIQNIYLWDKKNISRNKLQVINQMKQTGTSANRYDVTLLVNG
                     LPLVQIELKKRGVAIREAFNQVHRYSKESFNEENSLFKYLQLFIISNGTDTRYFANTT
                     KRNKNSFDFTMNWALKNNNPIKDLKDFTATFLSKQTLLNVLINYSVFDTSDTLLIMRP
                     YQIAATERIIWKIRSAIASKIKSGPETGGYIWHTTGSGKTLTSFKAARLATEMDEVDK
                     VFFVVDRKDLDYQTMKEYQRFSPDSVNGSNSTAGLKRNIEKDDNKIVVTTIQKLNHFM
                     TSEQEHDIYDKQVVFIFDECHRSQFGEAQKRLKKKFKKYCQFGFTGTPIKVENALGAE
                     TTASVFGKELHSYVITDAIRDQKVLKFMVDYNDVRPQFKAYETEQDLEKLSAAETKKA
                     LLHPTRISEISSYILEHFNQKTHRQSGKGFNAMFAVSSVGAAKAYYQELQEQQVGREK
                     PLKIATIFSFAANEAQAAIGEIDDENFTPNDLPDLSSKEFLSRCVHDYNQLFQTNYTI
                     NGNDFQNYYRDLAKRVKTGEVDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLIQAFS
                     RTNRIYDATKSFGNIVTFRDLEKATTDAIKLFGKTETAEVLLERSYTDYLEGYDDAGE
                     QKAGYLAVAQELLERFPDPSEIVKESDKKAFVDLFGKFLKLDNILQNYDDFVRLQAVQ
                     MLDFENPEEVVAFQAKYQMDIETMEELAQLPIPTVREIQDYRSAYNDIRDWYTHERQN
                     QQDSKSTVDWDSVVFEIELLKSQEINLDYILELIFETNKTVSDKDTLVEEITRTIRAS
                     LGNRAKEDLIVKFIHRSDLDSFVDKTDIIEKFFLFAREEQKKEVAELIQQEGLNEESA
                     KRYIQLSLRREYASENGNALNETLPKMSPLNPQYHTKKQTVFQKISALVEKFKGIGGS
                     ID"
     gene            4765..6249
                     /locus_tag="U1335_000330"
     CDS             4765..6249
                     /locus_tag="U1335_000330"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006595200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEM5230843.1"
                     /translation="MTLVYQSTRDAKNTVSASQAILQGLATDGGLFTPISIPTVDLDF
                     SVLKDASYQEVAELILSAFLDDFTADELDYCINNAYDSKFDTPVIAPVVKLKGQYNLE
                     LFRGSTIAFKDMALSILPYLMTTAAKKHGLENKIVILTATSGDTGKAAMAGFADVPGT
                     QIIVFYPRDGVSKVQELQMTTQTGANTHVVAIDGNFDDAQTNVKQMFNDEALRAKLAA
                     KKLQFSSANSMNIGRLVPQIVYYVYAYAQLVKTGEIAAGDKVNFTVPTGNFGNILAAY
                     YAKQIGLPVGKLICASNDNNVLTDFFSTGVYDKNRTFRVTTSPSMDILVSSNLERLIF
                     HLFGNDAAKTAELMEALNTAGQYDIQGADADILSLFAAAFATEEETAAEIKCVYDESN
                     YIEDPHTAVASAVYKQYVEQTGDQTPTVIASTASPYKFPVVAVEAVTGQSGLTDFEAL
                     AKLHEISGVALPPAVDGLETAPVRHTTVVAAADMQVEVERYLGV"
     gene            6377..8137
                     /locus_tag="U1335_000331"
     CDS             6377..8137
                     /locus_tag="U1335_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HEM5230844.1"
                     /translation="MAQEQEKISREKKKALLKRLKERIKPKMKLVYLAAFLSWVQFLM
                     RIISFYLIAQGFVTYYEGGQVDVVQFVLILLGLNAFGYGVALIAKRLQGIGSQFARDS
                     LKQSFFEALLAKDGQFESKATAADVFNIASQGIDSLDTYYSYYMASSLRTQFNCATVL
                     LLVSLIFPLGAVIFILALPLIPISIIAMQKRSKRIMTRYWGSYMDVGNLFLDDLKGLN
                     TLYSYQADATYEKTFNEQAEDFRDATMELLSFQLQEVGYMDAVMYLGIGLSGFVAVNS
                     LAAGNLSLFSMLFFVLIATEFFAPIREQGYGMHLVMMNTKMADRIFGFLDSMTAEQEI
                     DSVHVPAFDSLKLENLAFAYGEKPVLKDISMTMTAGKVYALAGESGQGKTTLAQLLLG
                     RLRADRGAIYLGEQEISTVSQLSLNEQVLYVSGQSTLLNQSIYENLRMAVDWSKEDIL
                     AWADQHGVLRFVKNLPDGLDTIVGDDGAFLSPGQRQQVICARAVLAKRSLYIFDEVTS
                     SVDQDNEGLIYDLINLVAKDAIVIIITHKMKQVEQADDILFLSEEGAVTGNHATLYQT
                     SLAYRQLVDQQRELEEAVYG"
     gene            8130..9806
                     /locus_tag="U1335_000332"
     CDS             8130..9806
                     /locus_tag="U1335_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5230845.1"
                     /translation="MDKKEMPTSVLIPRLLQSMKHLLPRIVVAVCFAVLGQVVTIAIP
                     VILVYLAFDALTGNPAPLWTLGILILLALLRGAFRYGEHYFGHYVAFHTLAAYRRLIF
                     AKLRALAPGKLDRQDSGSLLKMIGEDIEALEVFFAHTIAPICTGILVALGLMVYFGLS
                     SWGLALLALVTYALVTYALLAIAIPNQFAKQLQPLLKEQNASRKGYVSYFIESLKSMK
                     DLMQFQQTDERFANLTQKSQEVNGQERKVAQTNFMQYAVSFLVVGLSIMGFAWLVFDL
                     VSSQSLDLATGVALLVSFTSSFAPFLELSRLPLGFKRAMNAGRNIYALLDEKEAERTG
                     DLVEVSVTDISIEQLDFDYDDRETGLYRNLSVQFEQGGIIGLVGESGAGKSTLMKLIM
                     RWYDWQKGQIRLSGLDSRQVDKAHLQGSFAYVPQVPQIFRQTIRENLLLGRTDVSDET
                     IMDLAEKCHMKERILAAPQGLDTLVEASYFSAGEGQRLELMRALLKNADCYIFDEPTS
                     NLDSLNEARFIQLVKEHCQGMVFLISHRSSTMACADTIFRLEDGQLVKEK"
     gene            9807..10400
                     /locus_tag="U1335_000333"
     CDS             9807..10400
                     /locus_tag="U1335_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MptD family putative ECF transporter S
                     component"
                     /protein_id="HEM5230846.1"
                     /translation="MKKLQVKDLMVTGAFAALYFVCVGLGTLLSLVFDRSGNMMYAPA
                     GAALLAGPVYMLLVAKVGKFGSISLVGAVMACFFFLSGYMTAAFLPSLTFGFLAEMVA
                     KSGRYKQKWTNLFSYIIFSFGNLGPIILMWFMRDAYEANLLARGKSAEYIARVMLDFT
                     PENVLWLSTTIILTALISGLFGQYMLQRYFKQSGYLS"
     gene            10397..11056
                     /locus_tag="U1335_000334"
     CDS             10397..11056
                     /locus_tag="U1335_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HEM5230847.1"
                     /translation="MKLDARTKIILVIFTSFTYGMRLTILENAVLVLGLSLLFWFSGK
                     RKMAIMSPIAYSIFCLLSYITFLPAWLTHLLLVLTYTWPPLLAGHLLLMTTSGYELIH
                     GLRKWHLPEVFLLTLGVMFRFLPAIKQDARTICASLKVRGIFLRKRDVVCKPLQYMEF
                     FLVPLMLSLLRTAQELTVASLTKGLAVSTKSPAYIRSSWTVLDWSLCLCCLGFLLLVR
                     L"
     gene            11020..12447
                     /locus_tag="U1335_000335"
     CDS             11020..12447
                     /locus_tag="U1335_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5230848.1"
                     /translation="MLSRFSASRPAVTVKNVALTYSGADKPALQVEDLTIPKGQCVVL
                     CGESGSGKSSFLKVLNGLTPEYYPAQLSGKIFLGDLDLQKSSLEETSRHIASVFQHPS
                     TQFFHSQVLQELVFPCENQGLSREEIENRLAWVMELFGLASLSQRTISSLSGGQQQRL
                     ALAVAAMQGTDVLVLDEPTANLDQERIAIVEDILKTLKSQGKTIIIAEHRLSYLSQLA
                     DRYLYFQDGQVVTDYLADEFLSRTEECRQDMGLRCYDSEPYGRAIAELADQFVNDKEG
                     LLVENLSVSQKENTLYEIEKLCLAPGQVVGLVGANGSGKTSLARYLVGLAEDKKSRIS
                     WQGQTLSSRQRLEKTAFVIQDVRLQLFAESVERELTLGRKNRAVDEHLVARFGLSDLL
                     ERHPVSLSGGEQQRVMIVASLLADKEIFIFDEPTSGLDLRRMQQVASALVDLKMKNKL
                     VLLISHDEELLNLVCDKIVDIKQLK"
     gene            12453..13730
                     /locus_tag="U1335_000336"
     CDS             12453..13730
                     /locus_tag="U1335_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM5230849.1"
                     /translation="MNKQTYKEILTIAFPAMGENLLQMLMGVVDSYLVASIGIVALSG
                     VSLANNILAVYQAVFIALAAAVSSRLAQDLGEGGSEGIGGTASESVKFTVFIGLLLGI
                     FSVLAGPIVLTSLGAESEVVQAGGLYLILVGGGAPFLGLMTSLSAILRTLGEPRFPMY
                     ISLLSNVLNALFSAFAVFVLHAGVAGVAIGTVLSRLIGCSLLWSRLPISLKPWTWSFD
                     KELLRLALPATGERLMMRVGDVVVVALITSLGTATVAGNAIGETLTQFNYMPALGIAT
                     ATIILTAKHRQDKAMVRHIFRTSFGLSLLFMFLVAGMTYFAGPFLIDLYTKDIQAAQA
                     SQTVLFYAMLGVPFTAGTLILTALWQGLGNARLPFYATTIGMWLVRIGIAYLLITFFK
                     IGLSAIWIATILDNAFRAGVLFFQYRYSKQESI"
     gene            13920..14855
                     /gene="mvk"
                     /locus_tag="U1335_000337"
     CDS             13920..14855
                     /gene="mvk"
                     /locus_tag="U1335_000337"
                     /EC_number="2.7.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HEM5230850.1"
                     /translation="MSVVGKANGKIILMGEHAVVYGQPAIAMPFSAVEIIAQVTAQGE
                     ALTVACDFYKGLVHKMPKIWESLKHAIRFSLYRIGAPTDPAIHIEISSTIPAERGMGS
                     SAAVAVAVARALFAYYEKDLTDGELWDIVQSSEKIAHGNPSGIDAATTSGKSPVFFIK
                     HQPIEPLELKLRAHLVVADTGVTGNTLEAISDVADLLEKKPEAIKLVEELGNLTRQAK
                     EDLVTDQAELLGSRMNQAHALLQKLGVSDPSLDKLVRLAQENGALGAKLTGGGRGGCM
                     IALVRTGQDAQTLSQILTQAGARQTWIQYLGETND"
     gene            14848..15873
                     /gene="mvaD"
                     /locus_tag="U1335_000338"
     CDS             14848..15873
                     /gene="mvaD"
                     /locus_tag="U1335_000338"
                     /EC_number="4.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diphosphomevalonate decarboxylase"
                     /protein_id="HEM5230851.1"
                     /translation="MTKQIGIARAHTNIALIKYWGKRDKELFLPMNSSLSLTLDAFYT
                     DTKVVFDPELTADEFYLNGILQKEKEILKISRFLDLFCEYIGERAFARVESLNFVPTA
                     AGLASSASAFAALALATATALDLDLSPATLSTLARRGSGSSTRSLFGGFVEWDMGTGS
                     EDSMAHPIDDADWDIGMVVLAVNTGPKKIASREGMDHTVATSPFYSAWVETAKQDLVD
                     IKAAIASRDFEKLGQITEHNGMKMHATTLSANPPFTYWSADSLVAQEAVRQVREATGL
                     SAYMTMDAGPNVKVLCRASQMDELVAELAKVFPREKIITSKPGPAAYVLSEDEWQTSQ
                     AAFEKGL"
     gene            15875..16954
                     /locus_tag="U1335_000339"
     CDS             15875..16954
                     /locus_tag="U1335_000339"
                     /EC_number="2.7.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomevalonate kinase"
                     /protein_id="HEM5230852.1"
                     /translation="MKVQVKIPGKLFLAGEYAVVEAGYPAVIAAVDQYLTITIETSDQ
                     GSLHSSQKADLYLTWERKENEIFIQDDHPYVLIETAMQVTEAYLTAKGYACHGTYSLA
                     VQSDLDDQTSGAKYGLGSSGAVTVATVKALLTYYGHRPDALLTYKLAALAQTKLGMTG
                     SFGDLAASSFGGLIAYHSLDRSWLLGKMAELSLLDLVESDWQGLSISPIQLPQGLDLL
                     VGWTGSAASTDSLVSQMESQKSQAEKEQIHSRFLADSKTCVEQLIVACQTNDLVSARQ
                     AITQNRKLLQDFARGMGLVIETPQLSQLCDLAQTYGAVAKSSGAGGGDCGICLVDSKE
                     QKTAIETAWQEAGIFPLQLKITSRE"
     gene            16965..18062
                     /locus_tag="U1335_000340"
     CDS             16965..18062
                     /locus_tag="U1335_000340"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 2 isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HEM5230853.1"
                     /translation="MFYLGEFGLDRKDQHVGLANQQYSATPAKDFTETLFVHHSLPQT
                     KVDEVDISTSVAGLDFAFPFFINAMTGGSKKTREINRLLGIMGHFGKIALASGSVSAA
                     IKDPSVAETFSVMRRENPYGIIFANLGAHHSVENAKRAVDLLEANAIQIHVNAPQEIV
                     MPEGDRDFTMWLKNIETLVREMEVPVIVKEVGFGMSRETVAQLASVGVKTIDVSGTGG
                     TDFAKIENARRTFNDYTYLEGWGQSTVTSLVEAMSVSENIRPSLIASGGIKTPLDIVK
                     SLALGADLVGMSNHFLQYVKDGKGHRFDDGLQAIKTYQWQMAEIMTMLGAKNIADLRK
                     KDLVLAPNVQNWCEARGIDWKAYARRSANVS"
     gene            complement(18157..19905)
                     /locus_tag="U1335_000341"
     CDS             complement(18157..19905)
                     /locus_tag="U1335_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5230854.1"
                     /translation="MLSKTKQTSVFLRLLSYLKAYRLLTVLALSFLLLTTVVRSLIPL
                     LASYFIDHYISTISETAVAILAAYFALYLLQMLLQYFGNLWFAKVSYSIVRDIRRDAF
                     GRMEKLGMAYFDQTPSGSIVSRITNDTESISEMFSGILSSFISALFIIITTLSTMFAL
                     DWKLTCLIILFLPLIFLLVDQYRKRSAPIVAKTRSLLSSINSKLAESIEGIRIIQAFS
                     QEDRLKEEFEAINQEHLDYASRSMALDSLFLRPALSLIKILAYALLMTYFGLDWSQAG
                     ISAGLIYAFIQYVNRLFDPLLDVTQHFSTLQTSMVSAGRVFTLMDQTIEEPLQLDRGA
                     KIDKGHIVFEDVCFSYDGKRQILDKVSFEVRQGQTIAFVGATGSGKSSIINVFMRFYE
                     FQSGRILIDGQDIRSFSQEELRSAIGLVLQDPFLFHGTIASNIQMYQDISREEIEEAA
                     RFVDAAPFIEKLPEKYDHLVTERGTAFSTGQRQLLAFARTMASQPKILILDEATANID
                     SETEQTVQTSLEKMRKGRTTIAIAHRLSTIQDADCIYVLDKGKIIESGNHEELLALRG
                     HYHRMYQLQAGQLTAT"
     gene            complement(19895..21637)
                     /locus_tag="U1335_000342"
     CDS             complement(19895..21637)
                     /locus_tag="U1335_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000022464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM5230855.1"
                     /translation="MKIIKQLWWFFSLEKKAYLIGILSLCLVSLLNLLPASIMGQLID
                     QIASGQLTEHRLLLGVAGLILSALAMYGLRYLWRMNILATSYRLGKIMRARLFDHFMH
                     LSPSFFQQHRTGDLMAHATNDINALTRLAGGGVMSFVDATVTALVTLITMSVSISWQM
                     TLVAILPLPFMTLTTNFLGRRTHENFKASQAAFSELNNKVQEAVSGIKVTKSFGYQEQ
                     ETAAFQEVNQAAFLRNIKTMRYDALFNPAVLFFIGLSYLLTLLVGSHFISQGQVSLGQ
                     LVTFMTYLDLLVWPLMAIGFLVNISQRGDVSYNRIQTLLSISSEVIETEQSLPAPSNG
                     EIVYEISEFAYDNLPVLQDIHFHIEKGQTIGLVGPTGSGKTSLLKLLMREYDVTNGQI
                     LLNQENIKNYKLADLRRLIGYVPQDQFLFATSVAENIRFGNPDLSLDQVEEAARAVHV
                     YEDIQDMPDRFDTMVGEKGISLSGGQKQRLAMARAMILNPDILLLDDSLSAVDAKTEH
                     AILETIKQERLDKTTIITAHRLSAIVHADLILVLEDGKIVERGRHQELLDEKGWYYDT
                     YMMQQLEKEESDAL"
     gene            21894..22160
                     /locus_tag="U1335_000343"
     CDS             21894..22160
                     /locus_tag="U1335_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002905356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEM5230856.1"
                     /translation="MKAIVTVVGKDKSGIVAGVATKIAELELNIDDISQTVLDEYFTM
                     MAVVSSDEKKDFTKLRAELEAYGQALNVKINIQSAAIFDAMHNL"
     gene            22172..23509
                     /locus_tag="U1335_000344"
     CDS             22172..23509
                     /locus_tag="U1335_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018166727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PFL family protein"
                     /protein_id="HEM5230857.1"
                     /translation="MDIRQVRETIEMIEEQNFDIRTITMGISLLDCIDSDIDKAAEKV
                     YTKIVTKAKNLVAVGDEIAAELGIPIVNKRVSVTPIALIGAATDATDYLPLAHALDKA
                     AHEIGIDFIGGFSALVQKGYQKGDEILINSIPQALAQTSKVCSSVNIGSTKSGINMTA
                     VRDMGRIIKETAEASDMGAAKLVVFANAVEDNPFMAGAFHGVGEADVVINVGVSGPGV
                     VKRALEKVRGESFDVVAETVKKTAFKITRIGQLVGNMASERLGVKFGIVDLSLAPTPA
                     VGDSVARVLEEMGLETVGTHGTTAALALLNDAVKKGGVMACNQVGGLSGAFIPVSEDE
                     GMIAAVQNGSLNLEKLEAMTAICSVGLDMIAIPETTPAETIAAMIADEAAIGVINQKT
                     TAVRIIPLGKEGDMIEFGGLLGTAPVMKVNQASSVDFINRGGQIPAPIHSFKN"
     gene            23582..24277
                     /locus_tag="U1335_000345"
     CDS             23582..24277
                     /locus_tag="U1335_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM5230858.1"
                     /translation="MADVRLYISRHGKTMFNTIGRVQGWCDTPLTKAGEEGIRELGLG
                     LKDAGLDFKVAVSSDLGRTVQTITIAQRELGILGKIPYYQDKRIREWCFGSFEGMYDA
                     ELFQGVLPRLRGTVDATGMSFAEIAAGIQEADTAGWAESWEVLSNRILTGFESIAQDL
                     EKQGGGNALVVSHGMTIATLAHLLEPERGANVFLDNGSITVLKYENGKLLIEAVGDLS
                     YRKRGAELIAQGK"
     gene            complement(24359..25051)
                     /locus_tag="U1335_000346"
     CDS             complement(24359..25051)
                     /locus_tag="U1335_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5230859.1"
                     /translation="MIHYFKADLFKIQKEQRLTISLGILALLSFLSAFLLHGNEDFTS
                     SLIQLLSQFITLFFIVPANLFFGEDFTYRTINNIIIKQQTRKRVFFYKVLATLVLDLA
                     YILLAYLLSSSVGLLLGDRVDFAVIIHSFIAQTPLFICISLLSILIFVKSNKVNQAYL
                     AFSLMSLLFDNISNLITSNLLHMTLPTDYFLFLSLQQGEHITRLSMGVSFIATILYLY
                     LSYFIFSRKELK"
     gene            complement(25035..25931)
                     /locus_tag="U1335_000347"
     CDS             complement(25035..25931)
                     /locus_tag="U1335_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM5230860.1"
                     /translation="MSSLLSTQELSKQYGKQKAVHQVSLTINKGEICGLVGENGAGKT
                     TLLRMLSGLISQTSGTITSSKDCRIGALIESPALQPNLSAIDNLRYMALQLNLKQADE
                     KILETLAIVGLEDVDPKKKSKDFSLGMRQRLAIALAILDDPDFLILDEPINGLDPVGI
                     KEMRSIILNLRNQYGMTILISSHILSELEMVVDRYIIMHKGLIVKEFSKQELEQTLEE
                     QLYLQTNNHPKTFTILKEQGIAYKIDKEYISLPSDTNIMSIIHLLINHEIEVKEIFKQ
                     QMSFEDYYLTLLQEGEEHDTLL"
     gene            26030..26890
                     /locus_tag="U1335_000348"
     CDS             26030..26890
                     /locus_tag="U1335_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017769268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5230861.1"
                     /translation="MGTYGKIFKLIRESKNMSLKEVAGDFVTPAQLSHFENGKSNLSV
                     DTFFNCLRRMNVVEGEFSTLYQSYFQIDNLFSSEEFVRAVYSHNAQYMDNKILFHQAE
                     YDRGGRPFDRVMVAAFHIFKQQWCDPDYDVSEDEKAILSDYLMSIDDWGKFELWIFGN
                     CSRGLPSKMLEVLGMEVLNRTKFYMDITENRDNVYKVLINISSSLLDRGEEIAAIRFL
                     EILDSVNIMEKNMRDRLLLKLLKARLSYMNGNDGGLEIMKECLHIAKFLDCYDLIHQI
                     NKEIEKVTDM"
BASE COUNT         7435 a         5353 c         6615 g         7544 t
ORIGIN      
        1 aaaattacca aaaaggtaat tttggtagag attgtgaaag gagaatgaat gcaaatccaa
       61 tataataata aaacagttga aaaacagtgt acaaatttga ggatagcaaa gagagaattt
      121 tcagataagg ttgccaagaa gttgcacaaa ttggtcaatt ttattgaaag tgctgacaat
      181 ctcgcttccg taatcgcatt tccgacgtat cattttcatg atttaaaagg agaaagagag
      241 ggagaatatg ctttggatat tgacggacgt agaggttctt acagactaat cgtctgcttt
      301 gatgaggaga aagattccgt attttccaat gcccagagta ttagaataat tcaaattgag
      361 gaggtaagta atcattatgg ttcataacat tcaaaactat aaagatttaa tcgctttcca
      421 tccaggttct tatgttgaag agataataga agacttaaat atgtcccaag aagagtttgc
      481 gattcgttta gggacaaccc caaaaacaat cagtaaattg gtaaatggtg aaatttcagt
      541 cagtaaggat cttgctaata aactatttaa attaacaggg gtatcaattc ttacttggtt
      601 aaatcttcaa gcgagctatg atgcaaaggt tcttgaaata gaggaacttc aaaatcaaga
      661 tgaaaaagag attttgaagc tgattgattt tgattatttc aaaagacacg gctttgttcc
      721 accgggaagg tatagcttgc tacaaaaagt ggctgagttg agaaagcttt ttcaaatttc
      781 aaatcttaca tatctgagtc agttcaatca gcttgttagt tatcgaaata caaaaggttt
      841 tgatgagcgt tcggtggtaa attcaaatgt tatgcttgag ttggctataa aattatcaaa
      901 agatgcaact gacacaaagt ttaataagtc aaaattagta aaaatactac cagaactacg
      961 agagatgacc ttgaaagatg gtggagaatt ttacccgatg ttacattcaa aattattgga
     1021 atgtggtatt tgtttggtcg gacttccaaa attaaaaaat gccaatctga atggtgcgac
     1081 caagcgattt aaaaatggta gtgtattatt gttgttaact gataaaaata agcgttcaga
     1141 tattttttgg ttctcatttt tccatgaatt aggtcatatt ttacataatg atttttactc
     1201 ggattatgat gatagggatg cttatgaaga aaaagagcaa aaagcggatc aatttgctca
     1261 agaatttctt attcctacga acgaatatga acagtttgta gcagaaaaat cttttgataa
     1321 atcatccatc attcgttttg ctcatgaaat cggtatccat ccaagtattg ttttgggaag
     1381 actccaaaaa gaaggatttg tagaatacag tcagtatcaa gagctaaaaa ttagttacaa
     1441 tatcattatc agaggaaatg cagtataaat cattttgaat acagtgcaag gatgtttcaa
     1501 tcctcgtttt ttggtataat ctaggtataa aacagtattt atcatgtcaa ctattttata
     1561 aggagcaacc atgactgata ttattcaaac agacccgatt attgaatcca acaatttcat
     1621 cgttttagac aagtatgtga aatcagtgca gccaggtcat taccagacag aagctgattt
     1681 ggagaaggag ctgattgcgg atttgcagca gcaaggttat gagtatctga actacctgac
     1741 cactcctgaa gcattgctgg gaaatcttcg ggcgcagatg gaaatgctca atcgtgtcag
     1801 ctttacagac gaagagtggc aacggttttt ggatgagtat ttgaataaac caagcgagag
     1861 cttgattgat cggacgcgta agcttcatga tgatcatgtc tatgacttta tttttgatga
     1921 cgggcatatt caaaatatct acctgtggga taagaagaac atcagtcgaa ataaattgca
     1981 ggtcattaac cagatgaagc agacgggaac gagtgccaat cggtacgacg tgaccctttt
     2041 ggtcaatggt ttgcccttgg ttcagattga gttgaaaaaa cgcggagttg ccattcggga
     2101 ggcttttaac caagttcatc gctacagcaa ggaaagtttt aacgaagaaa attccctctt
     2161 caagtacctg cagctcttta ttatttcaaa tggaacggac acccgttact ttgccaacac
     2221 gaccaagcgg aacaagaatt cctttgattt tactatgaat tgggccttga agaacaataa
     2281 tccgatcaag gatttgaagg acttcacggc aactttcttg agtaagcaga ccttgttaaa
     2341 tgtcttgata aactattccg tttttgatac aagtgatacc ttactaatca tgcgtcctta
     2401 tcagattgca gcgactgaga ggatcatctg gaaaattcgc tctgctattg cttcaaaaat
     2461 caagagtggg ccagaaacag gtggctatat ttggcatacg actggatctg gaaagacctt
     2521 gactagtttt aaggcggcac gcttggcgac agagatggac gaagtggaca aggtcttttt
     2581 cgtagttgac cgcaaggact tggactatca gaccatgaag gagtaccagc ggttctcgcc
     2641 tgattcggtt aatggatcca acagtactgc agggctcaag cgaaatattg aaaaagatga
     2701 caataaaatt gtggtgacta ccattcaaaa gctcaatcat ttcatgacaa gtgagcagga
     2761 gcatgacatc tatgacaagc aagtggtttt catctttgat gagtgccatc gctcgcagtt
     2821 tggtgaggct caaaaacgcc tgaagaaaaa atttaagaag tattgtcagt tcggatttac
     2881 aggaacaccg attaaggtgg agaatgcttt aggtgcagaa accactgcct ccgtctttgg
     2941 aaaagagctc cattcctacg tgattacgga tgccatacgg gaccagaagg tcttgaaatt
     3001 catggtggat tacaatgatg tccgtccaca attcaaggcc tatgaaacag agcaggactt
     3061 ggaaaagttg agtgctgctg agaccaagaa agctcttttg cacccaactc gaatttcaga
     3121 gatttccagt tatatcttgg agcatttcaa tcaaaaaaca caccgacaat ctggaaaagg
     3181 ctttaatgct atgtttgccg tttcgagtgt tggagctgcc aaagcctatt accaggaatt
     3241 gcaggagcag caagtcggac gagaaaagcc actaaaaatc gcgacgatct tctcttttgc
     3301 agctaatgag gcccaggctg cgattggaga aattgatgat gagaatttta caccgaacga
     3361 cttaccagac cttagtagca aggaattttt aagtcgttgc gtgcatgatt acaatcaact
     3421 gtttcagact aactacacca tcaacggcaa tgatttccag aattattacc gcgacttagc
     3481 caaacgcgtg aagacgggcg aggtcgattt attgattgta gtgggaatgt tcttgacagg
     3541 ttttgatgct cctactttga ataccttgtt tgtggataaa aacctgcgtt atcatggact
     3601 aattcaagcc ttttcacgaa ccaatcggat ttatgatgcg accaagtcct ttggtaatat
     3661 tgtgactttc cgagatttgg agaaagcgac gacggatgcc attaaactat ttggaaaaac
     3721 agaaaccgca gaagtcttgt tggaacggtc ctacacagac tacttggagg gttacgacga
     3781 tgctggtgag cagaaagccg gctatttggc tgttgcccag gagctcctag agcgttttcc
     3841 agatccaagt gagattgtta aagaaagtga taagaaggcc tttgtagact tattcgggaa
     3901 gtttttgaag ctggataata ttctccagaa ctacgatgac tttgtgcgtt tacaagctgt
     3961 tcagatgctt gattttgaaa atcctgagga agtggttgct tttcaagcca aataccagat
     4021 ggatattgaa acgatggaag aactggctca gcttcctata ccgacagttc gggaaattca
     4081 ggactatcgt tctgcctaca atgacattag agattggtat acccatgaac gccaaaatca
     4141 gcaagacagc aaatcaacag tagattggga ttcggtggtc tttgagattg agttgttgaa
     4201 atcacaagaa atcaatctag actacatctt ggaattgatt tttgaaacca ataaaacagt
     4261 atcggataag gatactttgg tagaagaaat cacacggaca attcgtgcca gtcttggtaa
     4321 tcgagccaag gaagatctga ttgtgaagtt tattcaccga agtgatttgg atagttttgt
     4381 ggataagacg gacattatcg aaaaattctt cctctttgca cgggaggaac agaaaaaaga
     4441 agttgccgag cttattcagc aagaaggctt gaatgaagag agtgccaagc ggtatattca
     4501 actttctttg aggagggaat atgccagcga aaatgggaat gccctcaatg aaaccttgcc
     4561 gaagatgagc cccctaaatc ctcagtatca tacgaagaag cagactgttt tccaaaaaat
     4621 tagtgccttg gttgaaaaat ttaaggggat tggtggaagt attgactaag aaaaccggac
     4681 aagcgttcgg ttttttgttt tatcttgcca attttctgtc aatttatggt agaatagaaa
     4741 aaatagattt ttacgaggga taccatgaca ctagtttatc aatcaacacg cgatgcaaaa
     4801 aatactgtat cggctagtca agctattttg cagggcttgg cgaccgacgg tggtttgttt
     4861 acaccgattt ctattccaac agttgacttg gatttttctg ttttgaaaga cgcttcttat
     4921 caagaagttg ccgagttgat tttgtcggct ttcttggatg atttcacggc agatgaactg
     4981 gactactgta tcaataacgc ctacgacagc aagtttgaca cgccagttat tgccccagta
     5041 gttaagctaa aaggtcagta caatttggaa ctcttccgag gttcaaccat tgcctttaag
     5101 gatatggctc tgtctatctt gccttacttg atgacgactg cggctaaaaa gcatggcttg
     5161 gaaaacaaga ttgtcatctt gacagcgact tcaggtgata caggcaaggc agctatggct
     5221 ggctttgcgg atgttcctgg tacgcaaata atcgtcttct acccacgcga cggtgtgtct
     5281 aaggtccaag aattgcagat gaccacacag acaggggcta atacgcacgt ggtggctatt
     5341 gatggtaact tcgacgatgc tcaaaccaac gttaagcaga tgttcaacga tgaggccctc
     5401 cgtgccaaat tggcagctaa gaaactccag ttttcatctg ctaactctat gaacatcggc
     5461 cgcttggtgc cacagattgt gtactatgtc tatgcctatg ctcagctggt caagactggc
     5521 gagattgcgg cgggcgataa ggtcaacttc accgttccaa caggtaactt tggaaacatc
     5581 ttggcggctt attacgccaa acaaatcggt ctgccagttg gcaagctcat ctgtgcgtcc
     5641 aacgacaaca acgtcttgac cgacttcttc tcgacaggcg tttacgacaa gaaccggacc
     5701 ttccgcgtga ccaccagtcc ttccatggat atcttagtct cctctaactt ggagcggttg
     5761 attttccatc tctttggcaa tgatgctgca aaaacagccg agcttatgga ggccttgaat
     5821 acggctggtc agtatgatat tcaaggggct gacgcggata tcctctctct ctttgctgcc
     5881 gcctttgcga cagaagaaga aaccgctgcg gaaatcaagt gtgtctatga cgagtcaaac
     5941 tacattgaag acccacatac ggctgttgcc tcagctgtct ataaacagta tgtggagcaa
     6001 acaggagacc aaactccgac agtgattgcg tcaactgcta gtccttacaa gttcccggtg
     6061 gttgcggttg aggctgtgac aggccagtca ggcttgaccg actttgaagc ccttgcaaaa
     6121 ttgcatgaga tttcaggtgt agccttgcca ccagctgtgg acggcttgga aacggcacct
     6181 gtccgccaca ctaccgtcgt tgcagctgca gatatgcagg ttgaagtaga acgctatttg
     6241 ggtgtttaat ctataaatga ttgctaacaa actgttcagc tgagcagttt gttttctttg
     6301 tattgtttaa attaaaattt acagacaatt caaagaatgg tatactagat gtaaatactt
     6361 gtagatgagg tggtgtatgg cacaagaaca ggagaaaatc tccagagaaa agaaaaaagc
     6421 cctcttgaag cggctcaaag aacgcatcaa acccaagatg aagctggttt atttggcagc
     6481 ctttctatca tgggtgcaat ttttgatgcg gattatttcc ttctatctga ttgctcaagg
     6541 ctttgtgacc tactatgagg gtgggcaagt tgatgtggta cagtttgtcc tcatcttgct
     6601 ggggctcaat gcttttggct atggtgtggc tctgattgcc aaacgcttac aaggaatagg
     6661 atctcagttt gctcgggatt cgcttaagca gtctttcttt gaggctctct tggctaagga
     6721 cggtcagttt gagtcaaaag cgacagcagc ggatgtcttt aacatcgctt cacaggggat
     6781 tgacagcctg gatacctact attcttacta catggcatct tctctgcgga cccagtttaa
     6841 ctgtgcgact gtgctcttac tggtctccct aatctttcca ttgggggcag tcattttcat
     6901 cttggccttg cctctaattc ccatttccat tatcgccatg cagaagcggt ccaagcggat
     6961 catgactcgc tattggggct cctatatgga tgtgggcaat cttttcctgg acgacctcaa
     7021 ggggctcaac accctttatt cctatcaggc ggacgcgact tatgaaaaga cctttaatga
     7081 gcaggccgag gacttccgcg atgcgaccat ggagctactc agctttcagc tgcaagaggt
     7141 gggctacatg gatgcggtca tgtatctggg gattggcttg tctggttttg tggcggtcaa
     7201 tagcctagcg gcaggcaatc tctccctctt tagtatgctt ttctttgtcc tcattgcgac
     7261 ggagtttttt gcacccatac gggagcaggg ctacggtatg cacttggtga tgatgaatac
     7321 caagatggcg gatcgcattt ttggtttctt ggacagtatg acagcggagc aggaaatcga
     7381 ttctgtccat gtgcctgctt ttgacagtct aaaactagaa aatctagcct ttgcctacgg
     7441 agaaaagcca gtcttgaaag atatttccat gaccatgacc gctgggaagg tctatgcctt
     7501 ggcgggcgag tctggtcagg ggaaaaccac cttggcccag ctgctcttgg gacgcttgcg
     7561 ggcggatagg ggagctattt acttgggtga gcaggagatt tcgactgtca gtcagttatc
     7621 tctgaatgag caggtcctct atgtgtcggg ccagtcaacc ttgctcaacc agtcaatcta
     7681 tgaaaacttg cggatggcgg tggactggtc caaggaggac atcttggctt gggcagatca
     7741 gcatggggtc ttgcgatttg tcaagaatct gccagacggt ttggatacga ttgtgggtga
     7801 tgacggtgct ttcttgtcgc ctggtcaacg ccagcaggtt atctgtgccc gtgcggtctt
     7861 ggcaaaacgt tccctttata tctttgacga ggtgacgtcc agcgtcgatc aggacaatga
     7921 aggcttgatt tatgacctca ttaacttggt ggccaaggat gcgattgtca tcattattac
     7981 ccataagatg aagcaggtgg agcaggcaga tgatattctc ttcttgtctg aggagggagc
     8041 tgtgacaggt aatcatgcca cgctttatca gactagcttg gcttatcgtc agctggttga
     8101 tcaacaaaga gaattggagg aagcagttta tggataagaa agaaatgcca acaagtgtgc
     8161 tgattccgag actcttgcag tccatgaaac acctcttacc acggattgtg gtggcggttt
     8221 gctttgcggt cttgggacag gtggtgacca ttgctattcc agtcattctg gtctatctgg
     8281 cttttgatgc ccttactggc aatcctgctc cgctatggac cttgggaatc ctcattctcc
     8341 tagctctttt acgtggtgcc ttccgctatg gtgagcatta ctttggtcac tatgtggcct
     8401 ttcatacgct ggctgcctat cgtcgtttga ttttcgcaaa actgcgggcc ttggctcctg
     8461 ggaaattgga tcgacaggac agcggtagcc tgcttaagat gattggggag gacattgagg
     8521 ccttggaggt tttctttgcc cataccattg ccccgatttg tacagggatt ttggtggctc
     8581 ttggtttgat ggtctatttt ggtctatcta gctggggttt ggctttgctg gctctggtga
     8641 cctatgctct ggtgacctat gctctgttgg ctattgctat tccaaatcag tttgccaagc
     8701 agctgcagcc cttgctcaag gagcaaaatg ccagtcgtaa gggctatgtg tcctacttta
     8761 ttgaaagtct caaaagcatg aaggacctca tgcagttcca gcagacagat gaacgttttg
     8821 ccaatctgac gcagaaaagc caagaggtca atggtcagga gagaaaggtc gcccagacca
     8881 acttcatgca gtatgccgtc tccttcttgg tggtgggctt gtctatcatg ggctttgcct
     8941 ggctggtctt cgacttggtt agcagtcaga gtttggactt agcgacagga gtagccctgc
     9001 tggtttcttt cactagctcc tttgctccct tcttggaact cagccgtctg cctcttggtt
     9061 tcaagcgggc catgaatgct ggtcgcaaca tctatgctct tttggatgaa aaagaagcag
     9121 agcgaacagg tgacttggtt gaggtcagcg tgacggacat ttccatcgag caactggact
     9181 tcgactatga tgaccgtgaa acagggctct atcgcaacct gtctgttcag tttgaacagg
     9241 gtggtattat tggcttagtt ggtgagtctg gtgcaggaaa atccaccttg atgaaattga
     9301 tcatgcgatg gtatgattgg caaaaaggtc aaatccgcct gtctggcttg gatagtcggc
     9361 aggtagataa ggcacatttg cagggctcct ttgcctatgt accacaggtg ccacaaatct
     9421 tccgccagac cattcgtgaa aatctcctct tgggacggac ggatgtgtcg gatgaaacca
     9481 tcatggactt ggcagaaaaa tgccatatga aagaacggat tttggcagca ccgcagggct
     9541 tggatacgct tgtggaggcc agttattttt cagcaggaga ggggcaacgc ttggaactca
     9601 tgcgggccct gctcaaaaac gcggattgct atatctttga tgaaccaact agtaacctag
     9661 attcgctcaa tgaagcccgc tttatccaac ttgttaagga acactgtcag ggcatggtct
     9721 tcttgatttc ccatagaagc tcgaccatgg cttgtgcgga taccattttc cgcttggaag
     9781 acggacaatt agtaaaggaa aaataaatga agaaattaca agtaaaagat ctgatggtaa
     9841 caggggcttt tgctgccctc tactttgttt gtgttggtct aggaaccttg ttgagcttgg
     9901 tttttgatcg ttcgggtaac atgatgtatg cacctgctgg agcagccctt ttggcaggac
     9961 ctgtttatat gctattggta gctaaggttg gtaaatttgg ttcaattagt ctggttggag
    10021 cagtaatggc ctgtttcttt ttcctatcag gctatatgac agcggcattt ctcccgagtt
    10081 tgacctttgg ttttttggca gaaatggtag cgaagtcagg tcgctataaa caaaaatgga
    10141 ccaatctttt tagctatatc attttctctt ttggaaactt aggacctatt attcttatgt
    10201 ggttcatgcg agatgcctat gaggccaatc ttttggcacg tggaaaatca gcagaataca
    10261 tcgctcgtgt catgcttgat ttcactccag agaatgtgct atggttgtca acgaccatta
    10321 tcttaacagc tcttatcagt ggtttgtttg gtcaatacat gcttcagcgc tattttaaac
    10381 aatcaggtta tctttcatga aattagatgc tcgtacaaaa attattctcg tcatcttcac
    10441 tagttttacc tatgggatga ggcttacaat attagaaaat gcagtgctgg tcttaggcct
    10501 tagcctgctt ttctggtttt ctggaaagcg gaaaatggct ataatgagtc cgatagccta
    10561 ttctattttt tgtctgttgt cctatattac atttttacca gcatggctga cgcatttgtt
    10621 gcttgtattg acctatacat ggcctccgct tttggcagga catctattac tgatgacgac
    10681 aagtggttac gaactcattc atggtttgcg gaaatggcac ctgccagagg tatttctttt
    10741 gacgttggga gtaatgtttc gtttcctacc tgccattaaa caggatgctc gtacgatttg
    10801 tgcctctttg aaggttagag gaattttttt acggaagaga gatgtggttt gtaagccact
    10861 ccagtacatg gagtttttct tggttccctt gatgctgtct ctcttgcgaa cagctcagga
    10921 attgacagta gccagtctga caaaaggttt ggctgtatct acgaaatcac ctgcatatat
    10981 tcggtcgtct tggaccgtgc tagattggag tctttgttta tgttgtctcg gttttctgct
    11041 tctcgtccgg ctgtgacggt aaaaaatgta gcattaactt attcaggagc agataaacca
    11101 gccttgcagg tagaggattt gaccattcca aaaggccagt gtgttgtttt atgtggggag
    11161 agtggctctg ggaagtctag ttttctcaag gtgttaaatg gtttgacgcc agaatattat
    11221 cctgctcagc tttcgggaaa aattttctta ggggacttgg atttacaaaa atctagtctg
    11281 gaagaaacat ctcggcacat tgcttcagtc tttcagcatc cgtctactca attttttcat
    11341 agtcaggtct tgcaggaatt ggttttccct tgtgaaaatc agggtttgtc aagagaagaa
    11401 atcgagaatc gcctggcttg ggttatggaa ttatttggtt tggcttctct tagccagcga
    11461 acgatttcca gtctatcagg tggtcagcaa cagcgtctag ccttggccgt tgcagccatg
    11521 caagggacag atgtcttggt tttagatgag ccgactgcca acctagatca ggaaaggatt
    11581 gcgattgtag aggacatctt gaaaacttta aaaagccaag gcaagaccat tattattgcc
    11641 gagcatagac tgtcttatct cagtcaattg gcagatcgct atttatattt tcaagatggg
    11701 caagtggtga cggattatct agcagatgag tttttaagtc ggacagaaga atgccgtcag
    11761 gatatgggac tgcgttgtta tgactcggag ccttatgggc gggcaatagc agagctggca
    11821 gaccagtttg ttaatgataa agagggttta cttgttgaaa atttatcggt aagtcagaaa
    11881 gagaatactc tctacgagat tgaaaaactc tgcttggcac caggacaggt ggtgggtttg
    11941 gttggagcga atggttctgg aaaaacaagc cttgctcgtt atctggtcgg tttagcggaa
    12001 gataagaaga gtaggatttc ttggcaaggt caaaccttat ctagtcgcca gagattggaa
    12061 aaaacagcct ttgttataca ggatgttcga ctccaactat ttgcggaaag tgttgagcga
    12121 gaacttactc ttggaaggaa aaatagagct gtcgatgaac atttggtagc tcgttttggc
    12181 ctatcggatt tgttggagag acatccagtc agtttatcgg gtggtgaaca acagcgcgtg
    12241 atgatagtag ctagcttact ggcagataag gaaattttca tttttgatga accgacgagc
    12301 ggcttggatt tgagacgaat gcagcaagtt gcttccgctt tagtagactt aaaaatgaag
    12361 aataagttgg ttttgttaat ttctcacgat gaagagctat tgaatctggt ttgtgataaa
    12421 atagtagata ttaaacagtt gaaatagaga ttatgaacaa acaaacctat aaagaaattt
    12481 taaccattgc ctttccagcc atgggggaaa accttctcca gatgttaatg ggggtagtag
    12541 actcttatct agtagccagt attggtatcg tagctttgtc tggagtttcc cttgctaata
    12601 atattttagc cgtctatcag gcggttttta ttgccctagc agcagcggtg tcttctcgtt
    12661 tggctcagga tttgggtgaa gggggttcag aaggcattgg aggaactgct agtgaaagtg
    12721 tcaagtttac agtttttatc ggtctccttt taggaatttt ttcagttctg gcaggtccaa
    12781 tagtacttac tagcttgggg gcagagtcag aagtggtaca ggctggaggt ctttatttga
    12841 tattggttgg tgggggagca ccttttttgg gactcatgac aagtttgagt gcaatcttac
    12901 gaaccttggg ggaaccacgt tttcctatgt atatcagcct gctctcaaac gttctaaatg
    12961 cactattttc agcatttgca gtctttgtgc ttcatgcagg tgtagctgga gttgcgattg
    13021 gcacggtctt atcgcggttg attggttgta gcctgctttg gtctcgctta ccaatttctt
    13081 taaaaccatg gacctggtcc tttgataaag aactgcttag acttgccctg ccagcaactg
    13141 gtgaacggtt gatgatgcgg gtgggagatg tggtagtcgt agctttgatt accagcttag
    13201 gaacagcgac ggtagctgga aatgcgattg gagaaaccct gacgcagttt aactatatgc
    13261 cggctttagg gattgctacc gctacaatca tccttacagc aaaacacaga caggataagg
    13321 ctatggttcg acatattttt cgaacaagct ttggcctttc tttgctgttt atgtttttgg
    13381 tggctggtat gacttatttt gcggggcctt tcctaatcga cctttatact aaggatattc
    13441 aagcagcaca agctagtcaa acagtattat tttatgccat gttgggagtt ccctttacag
    13501 ctggcactct tattttgaca gctctttggc aaggtttggg aaatgctaga ttaccctttt
    13561 atgccacaac tatcggtatg tggctagtgc ggattggcat agcttattta cttataacat
    13621 tttttaaaat cggtttgtca gccatttgga ttgcaacgat tttagataat gccttccgag
    13681 caggggtgct attttttcag tataggtatt caaaacaaga atcaatttaa gataaggcta
    13741 agaaaatttt cagtttcttt taagtttgta gctatatact atattcaagc tagaaatagc
    13801 gaacaacttt ctttttcata taatctccta gagaacagtc ggctgcggcc ggctgttttc
    13861 gtgtgttcta ttcttatgta aaaatggtat aatagtagtg attgtgtaag gagaaaagta
    13921 tgtcggtagt aggaaaagca aatggaaaaa tcattttgat gggagagcat gcggtggtct
    13981 atgggcaacc agcaattgct atgccttttt ctgctgttga aattattgct caggtaactg
    14041 ctcaagggga agcgctgact gttgcttgtg acttctataa aggcttggtg cacaagatgc
    14101 caaaaatctg ggaaagcctc aagcatgcca tccgtttctc gctctatcgt atcggagcac
    14161 cgacagaccc agctattcat attgagatta gttcgacaat tcctgccgag cgcggcatgg
    14221 gctccagtgc agccgtggca gttgcagtag cgcgcgccct ctttgcctac tatgaaaaag
    14281 acctgaccga cggcgaactc tgggacattg tccagtcctc tgaaaaaatt gcacacggta
    14341 atccctcggg catcgatgcg gcgaccacca gcggcaagtc ccccgtcttt tttatcaaac
    14401 accagcccat cgagcccttg gagctgaaac tccgtgccca cttggtggtg gctgatacag
    14461 gcgtgacggg aaatacccta gaagccattt cagacgtggc tgatttgttg gagaaaaagc
    14521 cagaggctat caagctagta gaagaactgg ggaacttgac ccgacaggcc aaggaagatt
    14581 tggtcacaga ccaggcagag cttctaggca gcagaatgaa ccaagcccat gccctcctgc
    14641 aaaaattagg cgtgtctgat cctagcctag ataagctagt ccgccttgcc caagaaaatg
    14701 gagcactcgg agccaaatta accggtggcg gacgaggcgg ttgcatgatt gctcttgtta
    14761 gaacaggcca agatgctcaa actcttagcc aaattcttac ccaagcaggt gcccgccaaa
    14821 cttggataca gtacttagga gaaaccaatg actaaacaaa taggtatagc ccgtgcccat
    14881 accaatattg ccttgattaa atactgggga aaacgagata aggaattatt tctaccaatg
    14941 aattccagtt tatccctaac ccttgacgcg ttttatacgg ataccaaggt cgtttttgac
    15001 ccagaattaa ctgccgatga gttctatctc aacggaattt tacaaaaaga aaaagaaatt
    15061 ttaaaaattt ctcgattttt ggatttgttt tgcgaatata taggtgaaag ggcatttgcc
    15121 cgagtggaaa gtctaaattt tgttccgact gcagctggtt tggcaagctc agcatcggcc
    15181 ttcgcagccc ttgcacttgc aaccgcaact gccttggatt tagatttgtc accagctacc
    15241 ctatcaaccc ttgctcgcag gggttctggc tctagtaccc gtagcctatt cggtggattt
    15301 gttgagtggg atatgggaac tggttcggaa gattctatgg ctcaccccat tgacgatgcg
    15361 gattgggata tcggcatggt cgtcttggcg gtcaataccg gaccgaaaaa gattgctagt
    15421 cgagagggaa tggaccatac ggttgccacc tcgccatttt actcagcctg ggtagaaacc
    15481 gctaagcaag acttggtgga catcaaggca gctattgcca gccgtgattt tgaaaaactt
    15541 ggtcagatta cagagcacaa tggcatgaaa atgcatgcaa caacactctc tgccaatcca
    15601 ccctttacct attggtcagc cgatagccta gtggctcaag aggcagtccg tcaggttcgt
    15661 gaagcgactg gcttatcagc ctacatgacc atggatgcgg gaccaaatgt caaggtcctc
    15721 tgccgagcaa gtcaaatgga tgagctagta gctgaattgg ccaaagtctt cccaagagag
    15781 aaaatcatca ccagcaagcc tggtcctgct gcctacgtcc tcagtgaaga cgagtggcag
    15841 acctcacaag cagcgtttga aaagggcttg tagcatgaaa gtacaagtaa agatacctgg
    15901 aaaactcttc ctagcagggg aatatgcagt tgtcgaagct ggctatcctg cggtgattgc
    15961 ggcggttgac cagtacctaa ccatcaccat tgaaactagt gaccaaggca gtcttcattc
    16021 cagtcaaaag gcagacctct atctgacctg ggagcgtaag gaaaatgaga ttttcatcca
    16081 agatgaccat ccctatgttc tgattgagac agccatgcag gtgacagaag cctatctgac
    16141 agccaagggc tatgcttgtc atggaactta cagtctagcg gtccagtctg acctggatga
    16201 ccagacttca ggtgccaagt atggtctggg gtcgtcaggg gcagtaacgg ttgcgacggt
    16261 caaggccctg ttgacctact acggtcaccg accagatgcc ctcctgacct acaagctggc
    16321 agccttggcc cagaccaagc taggcatgac aggttccttc ggagatttgg cagcctccag
    16381 tttcggtggc ttgatcgcct atcattccct ggaccgttcc tggcttttag ggaaaatggc
    16441 agagctgtcc ctgctggatc tggtggaaag tgattggcaa ggtttgtcta tcagccctat
    16501 ccagttaccc caaggtttag acctcttggt gggatggaca gggtcggcgg cttcgacgga
    16561 tagtctagtt tctcagatgg aaagccaaaa aagtcaggca gaaaaagagc aaattcatag
    16621 caggtttcta gccgactcta agacctgtgt agagcagttg atagtagcct gtcagacaaa
    16681 tgacttggta tcggctagac aggctattac tcaaaaccgc aagctcttac aggattttgc
    16741 gagaggaatg ggcttggtca ttgaaacccc tcaactgagt caactctgtg acctggctca
    16801 gacttatgga gcggtggcca aatcatctgg tgcaggcgga ggtgactgtg gcatttgcct
    16861 ggttgacagt aaggaacaaa aaacagcgat agagacggct tggcaagaag ccggcatttt
    16921 tccactccaa ctaaagatca caagtagaga ataaggagaa ccctatgttt tatctaggag
    16981 aatttggttt agaccgcaag gatcaacacg ttggcttggc caaccagcaa tatagtgcca
    17041 caccggccaa ggactttacg gagaccttgt ttgtccatca ttccctgcca cagaccaagg
    17101 tggatgaagt ggatatttcg accagtgtag ctggtttgga ctttgccttt cctttcttca
    17161 tcaatgccat gaccggtggg agcaagaaga cgcgggaaat caaccgtctg ttgggaatta
    17221 tgggacattt tgggaagatt gctctggctt ctggttcggt cagtgcggcg attaaggatc
    17281 cgtctgttgc ggaaaccttc tccgtgatgc gtcgggaaaa tccttacggg attatctttg
    17341 ccaacctagg tgcccatcat agtgtggaga atgccaagcg agcggtggat ttgttggagg
    17401 ccaatgccat tcaaatccat gtcaatgccc cccaggagat tgtcatgcct gagggagacc
    17461 gtgactttac tatgtggttg aagaatattg aaacccttgt acgtgagatg gaagtacctg
    17521 tcatcgtcaa ggaagttggt tttggcatga gccgagaaac agttgcccag ctggcttccg
    17581 tcggtgtcaa gaccattgat gtatctggta ctggggggac ggatttcgcc aagattgaaa
    17641 atgcccgccg taccttcaat gattatactt atctagaagg ttgggggcag tctaccgtga
    17701 cttccttggt ggaggctatg tctgtttctg aaaatatccg tccaagtttg attgcttctg
    17761 gtggcattaa aacaccgcta gatattgtca aatcattggc tttgggtgca gaccttgttg
    17821 gtatgtccaa ccattttctt cagtatgtca aggatggtaa ggggcatcgt tttgacgacg
    17881 gcttgcaggc tattaagact tatcaatggc agatggctga aatcatgacc atgttggggg
    17941 ctaagaatat tgcggacctt cgcaagaaag atttggtttt ggctccaaat gtacaaaact
    18001 ggtgcgaagc gcgtgggatt gattggaaag cctatgcccg tcggtcagcg aatgtgagtt
    18061 aaagagagat agattgatgt cttcagttct caacaatgta gaaaaataaa aaagccaggt
    18121 ccattttgga acttggcttt tgtcatggag tggtttctag gttgctgtta actggcctgc
    18181 ttgtaactgg tacatacggt ggtagtgacc cctgagggct agaagttctt cgtgattgcc
    18241 tgactcgatg atctttccct tatccaagac atagatacag tcggcatctt gaatagttga
    18301 taaacggtgg gcgatcgcaa tggttgtccg cccttttcgc attttttcaa gagaggtctg
    18361 caccgtttgc tctgtttccg aatcgatatt agcggtagcc tcgtctaaaa tgagaatctt
    18421 aggttgactg gccatggtgc gtgcaaaggc cagcagttgc cgttggcctg tcgaaaaggc
    18481 ggtaccccgc tcagtgacca ggtggtcgta tttctcagga agtttctcaa taaaaggagc
    18541 agcatccaca aatcgagccg cttcttcaat ctcctctcgg gaaatatcct gatacatctg
    18601 gatattagat gcaatggttc cgtgaaaaag gaagggatct tgcaggacta ggccaatcgc
    18661 ggaccgcaat tcctcttgcg aaaagctacg aatatcctga ccgtcaatca aaatccgtcc
    18721 agactggaac tcatagaaac gcataaagac attgatgata gaagacttgc ctgaccctgt
    18781 agcacccaca aaggcgatgg tctggccctg tctcacttca aaggaaacct tgtccagaat
    18841 ttgccgcttg ccgtcatagg aaaaacaaac atcctcaaag acaatgtgcc ccttgtcaat
    18901 cttggcccct cggtcaagct gcagtggctc ctcgatagtc tggtccatga gcgtaaagac
    18961 ccgtccggca gataccatag aggtttgaag ggtggaaaaa tgctgcgtga catccagcaa
    19021 gggatcgaaa agacgattga catactggat gaaagcatag ataagaccag cagaaatgcc
    19081 agcctgtgac cagtccaaac cgaaataggt catgagtagg gcataggcca aaatcttaat
    19141 aagtgatagg gccgggcgga gaaagagact gtccaaggcc atggaacgac tggcataatc
    19201 cagatgttcc tggttgatag cctcaaactc ttctttcaat cggtcctcct gagaaaaagc
    19261 ctggataatc cgaatgccct caatactttc agccagtttg ctgttgatag aactcagtag
    19321 gctcctggtc ttagccacaa tgggagcaga ccgcttccgg tattgatcaa ccaataagaa
    19381 aatcaaggga agaaagagga tgatcagaca ggtcaatttc caatccagag caaacatggt
    19441 cgaaagagtc gtgatgataa taaagagagc ggagataaaa ctggatagaa tccctgaaaa
    19501 catctctgaa atgctctcgg tatcgttggt aatccgagag acgatagagc cactcggagt
    19561 ctgatcaaag taagccattc ccagcttttc cattctccca aaagcatccc ggcgaatatc
    19621 tctgacaata ctgtaggaaa ctttagcaaa ccagagattt ccaaaatact ggagcagcat
    19681 ttgaagcaga tagagggcga agtaggccgc tagaatagcc accgcagtct cagaaatagt
    19741 ggaaatgtag tggtcgataa aataagaagc cagaagggga atcagactgc ggaccactgt
    19801 ggtcagcaac aaaaagctca aggccaggac tgtcagcaga cgataggctt tgagatagga
    19861 caagagtcgc aaaaaaacac tggtttgctt ggttttagag agcatcactt tcctcctttt
    19921 cgagttgctg catcatatag gtatcgtagt accagccttt ttcatctagt aattcttggt
    19981 gacgacctcg ctctacgatt ttcccatctt caagaaccag aatcaagtct gcatggacaa
    20041 tagctgacag acggtgggcg gtgataatgg tggtcttatc aaggcgttct tgcttgatgg
    20101 tttcgagaat agcgtgttct gttttagcat ccaccgctga gagcgagtca tccaagagca
    20161 ggatatctgg attgagaatc atagcacggg ccatagccaa ccgttgcttt tgtccgccag
    20221 aaagggaaat ccccttctca ccaaccatgg tatcaaagcg atcgggcata tcctgaatgt
    20281 cctcatagac atggacagcc cgagcggcct cttctacttg gtctagtgag aggtctggat
    20341 tgccaaagcg gatattttca gcaacgctgg tcgcaaagag gaattggtct tggggtacat
    20401 agccgattaa tcgtcgcagg tcagctagct tgtagttctt gatattttct tgattgagca
    20461 agatctgtcc atttgtcaca tcgtattctc gcatgaggag cttgagcagg ctggtcttcc
    20521 cagagcctgt tggccccacc agaccgattg tctggccttt ttcgatgtga aaatggatgt
    20581 cttggaggac tggcaggttg tcataggcaa attcggaaat ctcatagaca atctctccat
    20641 tgctcggtgc aggcagcgac tgctctgttt caatgacctc tgaagaaatg ctgagaaggg
    20701 tctgaatccg attgtaagat acatcaccac gctggctaat attgaccaag aaaccgatgg
    20761 ccatgagagg ccagacgagg agatccaagt aggtcatgaa ggttactagt tggcccagac
    20821 tgacctgacc ttgcgagatg aagtgagagc cgaccagaag ggtcagcagg taggacaggc
    20881 caataaaaaa gaggacggca gggttgaaca gggcatcgta acgcatggtt ttgatattcc
    20941 gcaagaaggc tgcttggttg acttcctgaa aagccgccgt ttcttgttct tggtagccaa
    21001 aggatttggt gacctttata ccagaaacag cttcctggac cttgttgttg agttctgaaa
    21061 aggctgcctg cgaagccttg aaattttcat gggtacgacg gcctagaaaa ttagtagtga
    21121 gtgtcatgaa gggcaggggc aagattgcca ccaaggtcat ctgccaggaa atactcacac
    21181 tcatggtgat cagtgtgacc aaagcagtga cagtggcatc gacaaaggac atgacgccac
    21241 cacctgctag tcgggtcagg gcattgatat cattggttgc atgggccatt aaatcccctg
    21301 ttcgatgttg ctgaaaaaag gaaggagaca ggtgcataaa gtggtcaaac agccgagccc
    21361 tcatgatttt tcctagacga taagatgttg ccaagatgtt cattcgccaa agatagcgga
    21421 ggccgtacat ggctaaggct gacaagatga gcccagctac cccgagtagc aagcggtgct
    21481 cagtcaactg tccgctggca atctggtcaa tcaactgccc catgatagaa gcgggaagga
    21541 gattgaggag gctgaccagg cagagtgata aaatcccaat caggtaggcc tttttctcaa
    21601 gggaaaagaa ccaccataat tgcttgataa tcttcataag tgtcctttct gaacaaaaga
    21661 aaggttggta gcttgtcgcc accaacgaat aatagaattc ggtgacacta gtgtatcaca
    21721 gactggtaga aatagaaagt ttgcaactta aaaactaggc aactctagcc gtggccgact
    21781 agaagaaaca gtaggagttg taaaaacgta cgatacaggt agaaatcaaa agatttttac
    21841 ctttttctgt atatttatga taaaataaat gaaaatttag aagaggtgtt cagatgaaag
    21901 ccattgttac agttgtcggt aaggacaagt caggaattgt tgcgggtgtt gcgaccaaga
    21961 ttgcggagtt ggaactcaat atcgatgata tttcacaaac tgttttggat gagtatttta
    22021 ccatgatggc ggtggtgtcg tcagatgaga agaaagattt caccaagctt cgtgcagaac
    22081 tagaagccta tggtcaggct ttgaatgtga aaatcaacat tcaaagtgcg gcgatttttg
    22141 atgctatgca caacttgtaa ggagagattt catggatatt agacaggtta gagaaaccat
    22201 tgaaatgatt gaggagcaga atttcgatat tcggaccatc accatgggaa tttccctctt
    22261 ggactgtatc gactcggata tcgacaaggc tgcggagaaa gtgtatacca agattgtcac
    22321 caaggccaag aacttggtag ctgtcggtga tgagattgcg gcagagctcg gcattcccat
    22381 tgtcaacaaa cgggtgtcgg tgacgcctat tgccttgatt ggtgcggcga cggatgcgac
    22441 ggattatctt cccttggctc atgccttgga caaggcggct catgagatcg gtatcgattt
    22501 tatcgggggt ttttcagctc tcgttcaaaa gggctaccaa aaaggtgatg aaatcctcat
    22561 caactctatt ccgcaggcgt tggcccaaac ctctaaggtc tgctcgtcag tcaacatcgg
    22621 ctcgaccaag tcgggtatca atatgactgc tgtgcgggat atggggcgga tcatcaagga
    22681 gacggcggag gcttctgata tgggggctgc gaagctggtg gtctttgcca atgcggtcga
    22741 ggacaatcct tttatggcgg gtgccttcca cggtgttggc gaggcggatg tggttatcaa
    22801 tgtcggcgtg tctggacctg gtgtggtcaa gcgtgccctt gaaaaagtgc gtggcgagag
    22861 ctttgatgtg gtggcggaga ccgtcaagaa aacagccttc aagattaccc gtatcggtca
    22921 gttggtcggc aatatggcta gtgaacgtct gggggtcaag ttcggtatcg tagacctgtc
    22981 gcttgctcct acgccagctg ttggtgactc agtagcacgg gttttggagg aaatgggctt
    23041 ggaaaccgta ggtacgcacg gaacgactgc tgcccttgca ttgctcaatg acgcagtgaa
    23101 aaagggtggg gtcatggctt gtaaccaggt cggtggcttg tcaggtgcct ttatacctgt
    23161 gtctgaggat gagggcatga ttgcggcggt gcaaaatggc tcccttaacc ttgaaaaatt
    23221 ggaagctatg actgccatct gttctgttgg tttggacatg attgctattc cagaaacaac
    23281 gccagctgaa accattgcgg ctatgattgc ggatgaagcg gcgattgggg ttatcaacca
    23341 gaaaacgact gcggtccgta ttattccgct cggaaaagaa ggggacatga tcgaattcgg
    23401 tggtcttctg ggaacagctc ctgttatgaa agtcaatcag gcatcgtctg tggactttat
    23461 caaccgtggt ggacagattc cagcaccgat tcatagcttt aagaactaaa aacgtaaacc
    23521 gattgccaca agctgtcggt tttttgatat actaatagta agaaatgaca aggagaatgc
    23581 tatggcagac gtaagattat atatttctcg tcacgggaaa accatgttta ataccatcgg
    23641 acgcgtacaa ggctggtgtg atacgccgtt gaccaaggct ggtgaggaag gaatccgcga
    23701 gcttggtttg ggacttaagg acgcagggct tgattttaag gttgcggtat ccagtgacct
    23761 aggacggact gtccagacca ttactattgc tcagcgtgag ttgggaattt tggggaaaat
    23821 cccatattac caagacaagc gtatccgtga atggtgtttt ggtagttttg agggcatgta
    23881 tgatgccgag cttttccaag gtgtcctgcc tcgtttgaga gggacagttg atgcgacagg
    23941 catgtccttt gcggaaatcg cagcaggtat ccaagaagca gacactgctg gctgggcaga
    24001 atcctgggag gttttgagca accgtatctt aacaggtttt gaatccatcg cccaagactt
    24061 ggaaaaacaa ggcggaggca atgcccttgt agtcagtcat ggtatgacca ttgcaacatt
    24121 ggctcatttg ttagagccag agcgtggtgc caatgtcttt ctcgataacg gctcaatcac
    24181 cgtcctcaaa tacgaaaatg gcaagctttt aattgaagca gttggcgatc tatcctaccg
    24241 caaacgcgga gcagaattga ttgcccaagg gaaataaatg tgaaatgaaa acatgtatgt
    24301 catacgtttt ttctgatgtg tgacatacat gttttttata tatgaaatct aagttacatc
    24361 attttaactc tttcctgctg aagataaagt agctcagata gagatatagt atagtagcta
    24421 taaagctaac acccatggat agccgtgtaa tatgttcccc ttgttggagg gaaaggaata
    24481 gaaaataatc tgttggtaat gtcatatgga gtagattact agtaatgagg ttggagatat
    24541 tgtcaaaaag aaggctcatt aaactaaagg caagataggc ttgattgacc ttgttggact
    24601 tgacaaatat caggatggat aacagagaga tacagataaa taaaggtgtt tgagcaatga
    24661 aactgtgtat tatcactgca aaatcaacac gatcacctag aagtaagcca acactgctac
    24721 tcaataaata ggctagaagg atataagcga gatctagcac aagggttgct aagactttat
    24781 agaaaaacac cctttttctt gtttgttgct tgataataat attattgatg gtacggtaag
    24841 taaaatcttc tccaaagaat aggttggctg gaacgataaa aaatagtgtg ataaattgag
    24901 aaagcaattg aataagagag ctagtgaagt cttcgttgcc atgcaacaaa aaagcggata
    24961 aaaaggacag taaagccaat attcccaatg aaatcgttaa tctctgttct ttttgaatct
    25021 taaataaatc agctttaaag taatgtatca tgctcttctc cttcttgaag caatgtcagg
    25081 taataatctt caaatgacat ttgttgttta aaaatttctt tgacctcaat ctcatggttt
    25141 atcaagagat gaatgatgct cataatattc gtatctgatg gcagactgat atactcctta
    25201 tcgattttgt aagcgatgcc ctgctcttta aggatagtaa aggtcttagg atggttgttc
    25261 gtttgtagat agagctgttc ttctagggtt tgttcaagct cttgctttga gaattctttg
    25321 acgataaggc ccttatgcat aataatgtat cgatcaacca ccatctcaag ctctgatagg
    25381 atatgactgg agataaggat ggtcatccca tattgattgc gaagatttaa aataatactt
    25441 ctcatctctt tgattccaac agggtcaaga ccattaatcg gttcgtctag gattaaaaaa
    25501 tcagggtcat ctaggatagc taaggcaatg gctaaacgtt gacgcattcc caatgaaaaa
    25561 tctttggatt ttttcttagg atccacatcc tctaaaccga caattgctaa tgtctctaag
    25621 attttttcat cagcttgctt aaggtttaat tgtagagcca tgtaacgaag attatcgatc
    25681 gcagataaat tgggttgtag agcaggggat tcaattaaag ctccaatacg acaatctttt
    25741 gaactagtaa tggtacctga ggtttgggat atgagacccg ataacattct gaggagcgtt
    25801 gttttcccag caccattttc accgactaag ccacagattt cacctttatt aatcgttaaa
    25861 gaaacctgat gaactgcctt ttgtttccca tattgttttg ataattcttg ggtagataag
    25921 agagatgaca taactacctg cctttctata aaaaaatgat aaatctatga tatactagat
    25981 tcaaaagttg gcaaatttcg ttacataaat gtaacgcgtg gagaatataa tgggaactta
    26041 cggaaaaatt tttaaactca ttcgtgaatc aaaaaatatg tctctaaaag aagtggcagg
    26101 ggatttcgtg acacctgctc agttatcaca ctttgaaaat ggaaagagta atctttctgt
    26161 agatacattt tttaattgct tgagacggat gaatgtggta gagggcgaat tttctaccct
    26221 ctaccagtcc tactttcaga tagataattt gttttcatca gaggaatttg ttcgtgcagt
    26281 ttatagtcac aatgctcagt atatggataa taaaattttg ttccatcaag cagagtatga
    26341 taggggtgga cgtccgtttg atagggtgat ggttgcggcc tttcatattt tcaagcaaca
    26401 atggtgcgat cctgattatg atgtttctga ggatgaaaaa gctattctat cggactattt
    26461 aatgtccata gatgattggg ggaaatttga actctggatt ttcggaaatt gtagcagagg
    26521 tcttcctagc aagatgttag aagttctggg aatggaagtt ctcaatcgaa caaagtttta
    26581 tatggacatc acagaaaaca gagacaatgt ctataaggta ctcatcaata tttcgagtag
    26641 tttgttagat aggggagagg agattgctgc gattcgcttt ctcgaaattc ttgactctgt
    26701 caatatcatg gaaaagaata tgcgggatcg cttgctgctt aagcttctaa aagcacgctt
    26761 gtcctacatg aatggaaatg atggtggcct agaaataatg aaggaatgcc tgcatattgc
    26821 caaattttta gattgctatg atttaatcca ccagatcaat aaggaaattg agaaagttac
    26881 agatatgtaa tgaattttaa gtggctcgtc atttcctgta agataatact tgtaagtttt
    26941 acaactt
//
LOCUS       DASGAC010000010        26794 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.010, whole genome shotgun sequence.
ACCESSION   DASGAC010000010 DASGAC010000000
VERSION     DASGAC010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 26794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26794
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.010"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            31..693
                     /gene="deoC"
                     /locus_tag="U1335_000349"
     CDS             31..693
                     /gene="deoC"
                     /locus_tag="U1335_000349"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HEM5230862.1"
                     /translation="MKLNKYIDHTILKPETTQEQVEKILAEAKEYDFASVCVNPTWVA
                     LAAESLKDSDVKVCTVIGFPLGANTPAVKAFETKDAISKGADEIDMVINIGALKTGNY
                     DLVLEDIKAVVAASGDKLVKVIIEACLLTDDEKVKACQLSQEAGADYVKTSTGFSTGG
                     ATVADVALMRKTVGPDMGVKASGGARSYEDAIAFIEAGASRIGASSGVAIMNGAQADG
                     DY"
     gene            680..1069
                     /locus_tag="U1335_000350"
     CDS             680..1069
                     /locus_tag="U1335_000350"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HEM5230863.1"
                     /translation="METIDLIELAVKNSQKAYVPYSKFPVSAVLVAKTGEIFTGVNIE
                     NASFGLTNCAERTAIFKAISEGVKDFSEIIIYGETEKPISPCGACRQVMAEFFDKDLK
                     VTLVAKDKSTVEMTVGELLPYSFTDLT"
     gene            1150..2217
                     /locus_tag="U1335_000351"
     CDS             1150..2217
                     /locus_tag="U1335_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family protein"
                     /protein_id="HEM5230864.1"
                     /translation="MNKKLVGLGLAAVAAVSLAACGNRASKSSSSEASSSADTSVKAA
                     IVTDIGGVDDRSFNQSAWEGLQEWGNAAGLSKGNGYDYFQSASESDYITNLDSAVAGG
                     YNLVFGIGFALESAIAEVAPNNPDTHYVIVDSVVPDQDNVVSVGFADHEASYLAGVAA
                     AKSTKTNHVGFIGGMEGVIIDRFEAGFVAGAKSVNKDIKITIDYAGSFGDAAKGQTLA
                     AAQYAAGADVIFHASGGTGNGVFAAAKAENETRNEADKVWVIGVDRDQSAEGEYTSKD
                     GKSSNFVLASTLKQVGTSVKDIATKAVAGEFPGGQVLQFSLKDKGVELAETNLSEDAS
                     KAVADAKQAILDGKVEVPEKP"
     gene            2383..3918
                     /locus_tag="U1335_000352"
     CDS             2383..3918
                     /locus_tag="U1335_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5230865.1"
                     /translation="MTKDYVIEMRNITKIFGEFVANDHINLNVRRGEIHALLGENGAG
                     KSTLMNMLAGLLEPTSGEIVINGQSVKIDSPSKAAQLGIGMVHQHFMLVDAFTVAENI
                     ILGSETTKGGVIDLKKAIAEIKELSAKYGLEVDPTAKVADISVGAQQRVEILKTLYRG
                     ADLLIFDEPTAVLTPAEIAELLKIMKALVEEGKSIILITHKLDEIRAVADSVTVIRRG
                     KSIETVAVEGATNQDLAEWMVGRSVSFKTEKVEASPKEVILSIKDLVVNENRGIPAVK
                     GLSLDVRAGEVVGIAGIDGNGQSELIQAITGLRKVKSGSITIKGEEVVGKTPRKITEM
                     QVSHVPEDRHRDGLVLPMTVAENFALQTYYKEPISKNGILNYNIINEKARALMEEFDV
                     RGASELVPIKALSGGNQQKAIIAREIDRNPDLFIVSQPTRGLDVGAIEYIRKRLIAER
                     DKGKAVLVVSFELDEILDVSDRIAVIHDGVIHGIVEPAKTNKQELGVLMAGGHIEKGE
                     EHA"
     gene            3911..4972
                     /locus_tag="U1335_000353"
     CDS             3911..4972
                     /locus_tag="U1335_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5230866.1"
                     /translation="MLNKYKNLALPLMAVVSGILLGAIVMLVFGYDPIWGYEELFYSA
                     FGNIKSIGEIFRAMAPLVFTALGFAVASRAGFFNVGLSGQAYVGWVFAGWFALANPDL
                     PRPVLILGTVLIAMLAGGIAGAIPGILRAYLGTSEVIVTIMMNYILLYSCNYIIRDVF
                     ADSLMKNTDSTVNVSANASYQTEWLRALTDNSRMNIGIFFAIIAVFVIWFLLTKTTLG
                     FEIRSVGLNPTASDYAGMSAKRTIILSMIISGALAGLGGAIQGLGTFQNVYIQSGNLD
                     IGFNGMSVALLASNSPLGIPLAAFLFGVLSVGAPGMVRAQIPPELINVVTASIIFFIG
                     VKFIFEQLLKSRNKAKGAK"
     gene            4974..5927
                     /locus_tag="U1335_000354"
     CDS             4974..5927
                     /locus_tag="U1335_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000060306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5230867.1"
                     /translation="MNVSILALLISQMLIYSAPLIFTSLGGVFSERGGIVNVGLEGIM
                     VIGAFAGVVFNIEFAGTFGNATPLLAVIVGGLAGVVFAAIHAMATINFRADHVVSGTV
                     LNLLAPALGVFLVKVIYNKGQTDSITESFGKFSFPILADIPIIGEIFFKNTSLMGYVA
                     IATAFLAWFILYKTKFGLRLRSVGEHPQAADTLGINVYAMRYAGVLIAGFLGGVGGAV
                     SAQSVNINFSATTIVGSGFIALAAVIFGKWNPIGAMLASLFFGLSQSLAVVGGQLPGL
                     KDIPTVYLQIAPYLITVIALSAFFGKAVAPKADGINYIKSK"
     gene            6030..6662
                     /locus_tag="U1335_000355"
     CDS             6030..6662
                     /locus_tag="U1335_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HEM5230868.1"
                     /translation="MSYSKEEELEGLLVENRKNDWYNSLSLRYEMRLIVRRLVLNIAM
                     SLDGFIARKDGSYDWIEGHGTDKYDTVLQFDNQKFFNNCDTVVMGRKSLEDCPLEMIE
                     GHQEKQFIVASHTEYTNYGNVRFVRGIIGEIMELRSREGGDIWLFGGASLVQDCLEVG
                     VIDHLIIGIIPTILGDGIPLFASLLEEKKLLLVESTVTDGIAMLRYDIRR"
     gene            complement(6705..7688)
                     /locus_tag="U1335_000356"
     CDS             complement(6705..7688)
                     /locus_tag="U1335_000356"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003050541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEM5230869.1"
                     /translation="MTATKQHKKVILVGDGAVGSAYAYALVNQGIGQELGIIDINKDR
                     TQGDAEDLSHALAFTFPKKIYSAEYSDAHDADLVVLTAGLPQKPGETRLELVEKNLRI
                     NQQIVTEIVNSGFNGIFLVAANPVDVLTYSTWKFSGFPKERVIGSGTSLDSARFRQAL
                     AEKIGIDARSVHAYIMGEHGDSEFAVWSHANVAGVKLYDWLQDNRDIDEQGLVDLFVS
                     VRDAAYSIINKKGATYYGIGVALARITKAIFDDENAVLPLSVYQAGQYEGVEDVFIGQ
                     PAIIGAHGIVRPVNIPLSEAELQKMQASAKQLKDIIDDAFANPEIAAGVKN"
     gene            7877..10321
                     /gene="gyrA"
                     /locus_tag="U1335_000357"
     CDS             7877..10321
                     /gene="gyrA"
                     /locus_tag="U1335_000357"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003244540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEM5230870.1"
                     /translation="MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHR
                     RILYGMNELGITPDKPHKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVD
                     GHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPAR
                     FPNLLVNGTTGIAVGMATNIPPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTG
                     ALVMGKSGIHRAYETGKGSIVLRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVK
                     LVQEKRIEGITAVRDESNREGVRFVIEVRRDASANVILNNLFKQTQLQTNFSFNMLAI
                     QNGVPKILSVRQILESYIEHQKEVVTRRTRFDKEKAEARAHILEGLLIALDHIDEVIR
                     IIRNSETDAIAQAELMEKFDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIAD
                     LADILAKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLS
                     NQGYIKRLAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRL
                     KGYEIPEYGRTAKGLPVVNLLKLEENEAIQTIINVTKDQEADSYLFFATRQGVVKRTS
                     VSEFANIRQSGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNMGRT
                     ATGVRGINLREGDQLVGATMISDDQEVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLK
                     VADKNGSLAGLTTVSGDEDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKI
                     MTFALVDAAEIKEEKE"
     gene            10328..11077
                     /locus_tag="U1335_000358"
     CDS             10328..11077
                     /locus_tag="U1335_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A sortase"
                     /protein_id="HEM5230871.1"
                     /translation="MSKRENKKKRKGSFWRNLLTVVLILISLALIFNTSIRNFIIGWN
                     TNKYQISNVTTEDIEKNKQAETTFDFDQVQSISTEAILAAQWDAQRLPVIGGIAVPEL
                     GINLPIFKGVFNTSLMYGAGTMKENQEMGKGNYALASHHIFGVTGAADVLFSPLDRAK
                     NGMKIYITDKTNVYTYVIDSVEIVSPESVYVIDDVEGRTEVTLVTCTDYNATQRIIVK
                     GVLESTTPYNETAKDILDSFNKSYNQYDYGQ"
     gene            11191..11871
                     /gene="radC"
                     /locus_tag="U1335_000359"
     CDS             11191..11871
                     /gene="radC"
                     /locus_tag="U1335_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HEM5230872.1"
                     /translation="MYQIEFKEEAILPRERLVEVGAERLSNQELLAIFIRTGTKKEPV
                     SILSNKLLNRLESLAALRELSIEELQSLTGIGRVKAIEIKAMIELGKRINQSELLLNE
                     RILGSEKLGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILH
                     YAVKCMATSVIIVHNHPSGSVQPSRNDLLFTENLKESCEKLGLVLLDHLIVGNKDYYS
                     FREESELF"
     gene            complement(11868..12560)
                     /locus_tag="U1335_000360"
     CDS             complement(11868..12560)
                     /locus_tag="U1335_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEM5230873.1"
                     /translation="MKKPVIGISGNEYKTGDHTEPLLSYTQTCLVQAIEDAGGLPLIL
                     PATEPDLAKYYIHLIDKLILTGGQNVQPSYYHEERTIDSDNYLPKRDEFELALIRAAQ
                     EDQKPIFGICRGLQLYNVAQGGSLHQSISDHWQDIDGQEVSQTIQLTQNSPLYDIYES
                     DPSVNSFHRQAIRDLAPDLEIIALSDNQQIIEAVHSAYPTKFLGVQWHPELLYGKREI
                     EKELFHYIVNKL"
     gene            complement(12564..13202)
                     /locus_tag="U1335_000361"
     CDS             complement(12564..13202)
                     /locus_tag="U1335_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HEM5230874.1"
                     /translation="MKNDKKSDIPRATAKRLSLYYRIFKRFYAGNIEKASSKEIAEAI
                     GIDSATVRRDFSYFGELGRRGFGYNVKELMDFFADILNDTSITNVMLVGVGNMGRALL
                     HYRFHERNKMKIVMAFEADDNPAVGTTDENIPIHAISEIKERISEANSQTAILTVPSV
                     KAQEVTDILVEAGVKGILSFSPVNLSVPKDVVVQYVDLTSELQTLLYFMRKG"
     gene            complement(13337..13540)
                     /locus_tag="U1335_000362"
     CDS             complement(13337..13540)
                     /locus_tag="U1335_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4649 family protein"
                     /protein_id="HEM5230875.1"
                     /translation="MIEIHYLDAYKQERIQTFENKDAAILAFSGCLTLPDYYPVTSIT
                     QNGQALDYKGTIGDLYRYLQTLD"
     gene            complement(13542..13886)
                     /locus_tag="U1335_000363"
     CDS             complement(13542..13886)
                     /locus_tag="U1335_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1831 domain-containing protein"
                     /protein_id="HEM5230876.1"
                     /translation="MAFQQSVTLKDCNFTYHISPAIKKYTLRDNTFEQTKAGHYQLTR
                     LLEEIPNSNQGFLLKIIINQDLTGFKINITDKSGLHLVNIFKPESNKVIQEKFYFLMD
                     SLIDRDIFTKEA"
     gene            complement(13888..15003)
                     /locus_tag="U1335_000364"
     CDS             complement(13888..15003)
                     /locus_tag="U1335_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM5230877.1"
                     /translation="MIYLDNAATTALSPTALQRMMEVAQENYGNPSSIHQSGRKANQC
                     LRQSRQEIAQILSASPEQIIFTSGGSEADTLAIQGYALAHQSKGKHLITTAIEHHAVL
                     HTMRYLEERFGFEVTYIQPVNQVITAQQIQDALRPDTILVSVMFANNETGQLLPIKEI
                     GELLADHQAVFHVDAVQTIGKIAISPSDYGIDLLAASAHKFHGPKGMGFLYSKVHKFD
                     SLIHGGKQEQQHRAGTENLPAIAAMATALTEQYESLDTHHKHVSELRQHIIEGLSGLD
                     YYLNQAGPHLPHVLNIGFPGKLNEQLLMQLDLAGIAVSSGSACTAGVVQNSHVLEAMY
                     GKDSHRLKESIRISLSEINTKEEIDTLIIELKKILGG"
     gene            complement(15014..15991)
                     /locus_tag="U1335_000365"
     CDS             complement(15014..15991)
                     /locus_tag="U1335_000365"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HEM5230878.1"
                     /translation="MVQPLGEHNIKLFSLNSNRDIAEKIADSAGIPLGKLSSRQFSDG
                     EIQINIEESVRGVDVYIIQSTSYPVNNHLWELLIMIDACKRASANTITAVIPYFGYAR
                     QDRTASPREPITAKLVANMLVKAGVDRVLTLDLHASQIQGFFDIPVDNLLTEPLFAAY
                     YMEKGLCGEDVVIVSPKNSGIKRARNIAEFLNAPIAIIDYAQDDSERSEGYIIGDVAG
                     KKAILVDDILNTGRTFSQASKIVQDGGATEIYAVASHGLFAGTAAQLLDEAPIKEILV
                     TDSVASKEQHPKNIAFLTASDLIADAIHRIQEHQPLSPLFKFTSPEKEN"
     gene            complement(16135..16701)
                     /locus_tag="U1335_000366"
     CDS             complement(16135..16701)
                     /locus_tag="U1335_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HEM5230879.1"
                     /translation="MKNHLEIEYKTLLTKSEYKRLLTDFSDVSPILQTNHYIDTPNLD
                     MKNHRFSLRIRTFEDSAELTLKIPQEVGNQEYNQVLDIQTAHDLLENFQLPAGQISDI
                     ISATEIPLDKLAVWGSLTTKRYEKQTSIGLMALDENDYVGQKDYELEVEVTDADAGKI
                     LFDEFLKKKSIQFKYASSKVARTAAHMK"
     gene            16788..17459
                     /locus_tag="U1335_000367"
     CDS             16788..17459
                     /locus_tag="U1335_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase family protein"
                     /protein_id="HEM5230880.1"
                     /translation="MDFNWEEFLDPYIQTVGELKIKLRGIRKQYRKANRHSPIEFVTG
                     RVKPIESIKEKMALRHIKLENLAQDMQDIAGLRIMVQFVDDIEEVLAILRKRKDMQIV
                     HERDYINNMKASGYRSYHVVIEYPVDTINGNETVLAEIQIRTLSMNFWATIEHSLNYK
                     YKGNFPEEIKKRLEVTAKIAYELDEEMRKIRNDIQEAQALFDPAYRKLNDGVGNSDDT
                     DEEYR"
     gene            17434..18261
                     /locus_tag="U1335_000368"
     CDS             17434..18261
                     /locus_tag="U1335_000368"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002933692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HEM5230881.1"
                     /translation="MIQMKNIGRKKIALLASRNPKSEAVSKELWTKLKEANFILTPKN
                     PDIVISIGGDGMLLSAFHKYEKLIDRVRFVGIHTGHLGFYTDYRDFEVDKLIENLKLD
                     TGARVSYPILNVKVKMTDGRIVEARALNEATVKRLSKTMVADIIINNVPFERFRGDGI
                     SVSTPTGSTAYNKSLGGAVLHPTIEALQIAEVASLNNRVYRTLGSSVVVPKKDKIVIE
                     PKHSDRYSIAVDNKTFVYDSIESIEYQIDNSKIHFVATPSHTSFWNRVKDAFIGEVE"
     gene            18261..19154
                     /locus_tag="U1335_000369"
     CDS             18261..19154
                     /locus_tag="U1335_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM5230882.1"
                     /translation="MRFEFIADQHTKIKTFLKKHGVSKGLLAKIKYTGGNIWVNDIEQ
                     NATYLLDIGDRVTIDIPAEEDLTGSLKPISFPLDIVYEDDHFLAINKPVGYASIPSAL
                     HSSTIANFVKGYLIEQNYENKQVHIVTRLDRDTSGVMLFAKHGYAHARLDKQLQAKLI
                     HKRYYALVKGNGQLEETGDIIAPIGRPEDSIITRCVTKNGKYAHTSYRVVQSWGDIHL
                     VDIQLHTGRTHQIRVHFSHIGFPLLGDDMYGGSLECGIERQALHCHNLAFDNPFSAER
                     IDLEAPLPEDFQAVINQLISK"
     gene            19172..20146
                     /gene="pta"
                     /locus_tag="U1335_000370"
     CDS             19172..20146
                     /gene="pta"
                     /locus_tag="U1335_000370"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEM5230883.1"
                     /translation="MKIFEQLATKLEGKKVRIVLPEGEEPRILQATKRLVNESDVVPV
                     LLGNPDRIKIYLDIEGITEGFEIIDPAHYDRYDEMVAALVERRKGKVSEEQAHELLKD
                     VNYFGVMLVYMGVVEGMVSGAIHSTASTVRPALQIIKTEPGVSKTSGAFLMVKGEERY
                     IFGDCAINIDPDAQTLAEIAINSARTAKMFGIDPKVAMLSYSTKGSGAGPKVDKVVEA
                     TKIAQKLRPELDLDGELQFDAAFVPTTGKLKAPGSSVAGQATVFIFPGISAGNIGYKI
                     AERMGGFAAVGPVLQGLNQPVNDLSRGCNPDDVYNLTLITAVQALEHR"
     gene            20148..21887
                     /locus_tag="U1335_000371"
     CDS             20148..21887
                     /locus_tag="U1335_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5230884.1"
                     /translation="MKFLSRYFKDYIKESILGPVFKLLEACFELLVPLIIAYIVDTII
                     PNGSQGNLVAMLFLLVGIACIGIIVSLIAQYYSAKAAVGVTKELTNDLYQKVLSLPKS
                     SRDILSSSSLLTRLTSDTLQIQTGINTFLRLFLRAPIVVFGSLIMAFYISPSLSAYFL
                     GMIILLIFIVTVISVMTSRIYQSIRKELDGLVGQVRETVTGWRVIRAFGQREREIKAF
                     QGINQIYKKQQLQAGFWSSLLSPLTFLVVNGTLLILIWQGNIAISHNLLEQGMLVALI
                     NYLLQILVELVKMIMVVSTLNQTYISAQRIQEVFDQTSEDVESSLPIVVSEDKEIIFS
                     VRHLSFSYPKSAEESLSDIAFDLRKGQFMGIIGGTGSGKSTLVDLLQALYSVPTSQLP
                     LFIDGKSPKNLKEWRQQIAIVPQQAQLFAGTIRSNLSLGLEEISDSDLWSALEIAQAK
                     SFIEDKGGLDSPVEAFGKNFSGGQRQRLTIARAILQKAPILILDDATSALDYLTESRL
                     LVAIRQELPGQNLIMVSQRTNSLRTADQILVLEQGRQVGLGRHEDLLRSSAIYQEIHQ
                     SQQQGEEDSYETS"
     gene            21874..23616
                     /locus_tag="U1335_000372"
     CDS             21874..23616
                     /locus_tag="U1335_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5230885.1"
                     /translation="MRQASFKELVRLVLHQPLRMSLMLVGTLVQVLLTVYLPILIGQA
                     VDAVLIANGQVLLGILGKMVMVILLNTLVQWYLPLVTNRLVYGMVADLREQVYVKLHQ
                     MPLSYLDRQSVGDLVARFSSDSEQLTNGLLMIFNQFFIGILTIFLTIFTMARLDLTMM
                     LLVVALTPVSLLVARYIAKKSYGYYRQQTQARGRQSQLLEESISQLTLIQSFNAQEQF
                     TQGFQVVNDQYATYSQQAIFASSTVNPSTRFINAIIYALLAGLGALRIMAGNFTVGSL
                     TTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSIDDQAERKIDSEELKG
                     AISFDNVSFSYSPDRSLIEHLDIDVKAGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQ
                     IVLDGVPISQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAAN
                     ADFFIRQLPQGYDTVLADGGEGLSQGQRQLLSIARVFVKIPKILILDEATSSIDTRTE
                     ILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAKQGVYYQ
                     MQTSQQTEEDESVR"
     gene            23600..23992
                     /locus_tag="U1335_000373"
     CDS             23600..23992
                     /locus_tag="U1335_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEM5230886.1"
                     /translation="MKVLDKLNLQPITVLDDYQATMLNEKEVLLTTKVTEKSLNPYGM
                     AHGGFLFTLADSVAGLTTVASGSYSVTLQSNIHYMKAAKLGDTLSVIGSCTHDGSRTK
                     VVEVKIENQDKQLLASASFTMFVTGKVE"
     gene            24170..25330
                     /gene="mutY"
                     /locus_tag="U1335_000374"
     CDS             24170..25330
                     /gene="mutY"
                     /locus_tag="U1335_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEM5230887.1"
                     /translation="MLNLKEYGIEMWPEEKIQAFRKALLDWYDANKRDLPWRRTKDPY
                     AIWVSEIMLQQTRVDTVIPYYERFLHHLPTISDLAQAPEEVILKLWEGLGYYSRVRNM
                     QKAAQQMVEDFDGQFPTTHAAISSLKGIGPYTAGAISSIAFNLPEPAVDGNVMRVLSR
                     LFEVDYDIGLPANRKIFQAMMELLIDPERPGDFNQALMDLGSDIESPVNPRPQDSPVK
                     AFSAAYLNGTMDKYPIKAPKKKPIPVAYQGFLIRNKDNQFLLEKNNEAGLLSGFWSFP
                     LLEKGAIVEKQVSLFEVAEEVVQPDIRQSFTELYGLTVDWQEQEFGIVQHIFSHRKWQ
                     IEMVEGVAETLNLPESKELKWVSVEDFPTYPFAKPQQKMWENFIKEKEKQKS"
     gene            complement(26013..>26794)
                     /locus_tag="U1335_000375"
     CDS             complement(26013..>26794)
                     /locus_tag="U1335_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5230888.1"
                     /translation="KEYRSKNKLSMDKFAELSGLTKGYISMLEKNQHPKTKKALLPTM
                     DTLEKVAKGMAISVGELIEQLDSNQDIALTITPSQFKLFQQPIHPEVQTLDNELKGDF
                     HAQWLTFGQEQLAAMQTTSVTPSASILHLDDYRERIELPVPGKVSAGTGYWQDTDMNN
                     LVSFYNDEIPDNQSYDTIAQVVGDSMAPHIEDGDYLFIRLTPHIPLNTIGIFSVNGEN
                     FVKKFKGDYLQSLNSDYDDIYFSPEDDIRPIGQVVDIYSPD"
BASE COUNT         7779 a         4790 c         6053 g         8172 t
ORIGIN      
        1 gagattattt cttaatatac ggagaaaact atgaaattga ataaatatat tgaccataca
       61 atcttgaaac ctgagacaac acaagagcag gttgaaaaga ttttggcaga agcaaaagaa
      121 tatgattttg caagtgtctg tgttaaccca acttgggttg ctttagcagc tgaaagcttg
      181 aaagatagtg atgtaaaagt ttgtacggtt attggttttc ctctcggagc aaacacacct
      241 gctgtaaaag cattcgaaac aaaagatgca atttcaaaag gagcagatga gattgacatg
      301 gttatcaata tcggtgctct aaaaactgga aattacgatt tggttttgga ggatattaaa
      361 gctgttgtag cagcaagtgg tgataaacta gtcaaagtta tcatcgaagc atgcctcttg
      421 actgatgatg agaaagtgaa agcttgtcaa ttatctcaag aagctggtgc ggactatgtt
      481 aaaacatcta caggattttc tacaggcggt gccacagtag cggatgttgc cttaatgaga
      541 aaaacagtag gtcctgacat gggagtgaag gcttcaggtg gtgcacgttc gtatgaagat
      601 gccattgcct ttatcgaagc aggagcgtct cgtattggtg cgtcatcagg cgtggcaatc
      661 atgaatggag cacaggcgga tggagactat tgatttaatt gaattagctg taaaaaacag
      721 tcaaaaagca tacgtaccgt actcaaagtt tccagttagt gcagttcttg tagctaagac
      781 aggggaaata tttacgggtg taaacattga aaatgcaagc tttggtttga ccaattgcgc
      841 tgaaaggaca gctattttca aggccatttc tgaaggtgtg aaagattttt ctgaaatcat
      901 tatttatggc gaaacagaaa agccaatatc tccttgtgga gcttgtcgcc aagttatggc
      961 agaatttttt gataaggatt taaaagtgac cttggtcgct aaagataaat cgacagtcga
     1021 gatgacagtc ggggaattac ttccatattc ctttacagac ttaacctagt ctgtatgaca
     1081 gtcatttgac tgtagcaata ttactctgca acaatatagt tgcaaaaaga tttttaggag
     1141 ggttcagaaa tgaacaagaa acttgttgga cttggtctag cagctgttgc ggctgtatct
     1201 ttggctgcat gtggtaaccg tgcttcaaaa agcagtagct cagaagcatc ttcatcagca
     1261 gacacatctg tgaaagctgc tatcgttact gacattggtg gtgttgatga ccgttcattc
     1321 aaccaatctg catgggaagg tcttcaagaa tggggtaatg cagctggtct ttctaaaggt
     1381 aatggctacg attacttcca atcagctagt gaatcagatt atatcacaaa ccttgattca
     1441 gctgttgctg gtggttacaa tcttgtgttc ggtattggtt ttgccttgga gagtgcgatt
     1501 gctgaggttg caccaaataa tcctgacaca cactatgtaa tcgtggatag tgttgttcca
     1561 gatcaagaca atgtagtcag cgtaggtttc gcagaccatg aagcatcata tcttgctggt
     1621 gttgctgcag ctaagtcaac taagacaaac cacgtgggtt tcatcggtgg tatggagggt
     1681 gttatcatcg atcgctttga agctggtttc gttgcgggtg ctaagtctgt aaacaaagac
     1741 atcaagatta caattgacta tgcaggttca tttggtgatg ctgctaaagg tcaaactctt
     1801 gcagctgctc aatatgctgc aggtgcagac gtgatcttcc acgcttctgg tggtactggt
     1861 aacggtgtat ttgctgctgc taaagcagaa aatgaaactc gtaatgaagc agataaagtt
     1921 tgggtaatcg gtgttgaccg tgaccaatca gcagaaggtg aatacacttc taaagatggt
     1981 aagtcttcta actttgtatt ggcttcaaca ttgaagcaag ttggtacttc agttaaagat
     2041 attgcaacta aagctgttgc aggtgaattc cctggtggtc aagtacttca attctcattg
     2101 aaagataaag gtgttgaatt ggcagaaact aacctttcag aagatgcttc taaagcagtt
     2161 gcagatgcta agcaagctat cttggatggt aaagtagaag ttcctgaaaa accttaatga
     2221 atttcttttc gacaattccg attcggcgac ccgacggggt cgccgttttc gggctgagat
     2281 ttttctcagt aaagcctatc agctatggta ggttttactg acaaaaatgg tatagttgat
     2341 gaagaatttt cagaaggcta tagtcagaaa ggataataga ttatgactaa ggattatgtc
     2401 attgaaatgc gcaatatcac taagatattt ggtgaatttg tagcaaatga ccacatcaat
     2461 ttgaatgtca gacgtggtga aatccatgcc cttcttggtg agaatggtgc gggtaaatct
     2521 actctgatga acatgcttgc tggcttgttg gaacctacaa gcggtgaaat tgttatcaac
     2581 ggtcaatccg tgaagattga ctctccatcc aaagcagccc aattggggat tggtatggtg
     2641 caccaacact ttatgttggt tgatgctttc acagttgctg agaacatcat tcttggttct
     2701 gaaaccacca aaggtggcgt gattgacctt aaaaaagcta tcgcagaaat taaagaactt
     2761 tctgctaaat atggtcttga agttgatcca actgcaaagg ttgcagatat ttctgtgggt
     2821 gcacagcaac gtgtagaaat ccttaaaaca ctttaccgtg gagcagacct tttaattttt
     2881 gatgagccga cagctgtatt gacccctgcg gaaattgcag agctcttgaa aattatgaaa
     2941 gccttggttg aagaaggtaa atctattatt ttgattacgc acaaattgga tgaaattcgt
     3001 gcagttgccg atagtgtaac agttattcgc cgaggtaaat caatcgaaac agttgccgtt
     3061 gaaggagcaa caaaccaaga tttggctgag tggatggttg gacgttccgt ttcctttaaa
     3121 acagagaaag ttgaagcgag tcctaaagaa gtcattttgt caattaagga tttggttgtc
     3181 aatgaaaacc gtggtattcc agcagttaag ggcttgtcgc ttgatgttcg agcaggtgag
     3241 gttgttggta ttgccggtat cgacggaaac ggtcaaagtg agttgattca ggcaatcact
     3301 ggtttacgta aggtaaaatc tggctcaatc actatcaaag gtgaggaagt agttggtaaa
     3361 actccacgta aaattacaga aatgcaagtg agccacgttc ccgaagatcg tcatcgtgat
     3421 ggactcgttc ttccgatgac tgttgctgag aactttgcgc ttcaaactta ctataaagaa
     3481 ccgatttcaa aaaatggtat cttgaactat aatatcatta atgaaaaagc acgcgcgtta
     3541 atggaagaat ttgacgttcg tggggcgagt gaactcgtcc caatcaaggc tctttcaggc
     3601 ggtaaccagc aaaaagctat catcgcgcgt gaaatcgatc gcaacccaga ccttttcatt
     3661 gttagccaac caacacgcgg tttggacgtt ggtgctattg agtatattcg taagcgtctc
     3721 attgcagaac gtgataaggg taaggctgtt cttgttgtca gcttcgaatt ggatgaaatt
     3781 ttggatgtat cagatagaat tgctgttatc catgatggtg tcatccatgg tattgttgaa
     3841 cctgctaaga ccaataaaca agagttaggt gtcttgatgg caggtggaca tattgagaag
     3901 ggagaagaac atgcttaata aatataagaa tttggccctt ccattaatgg ctgtggtcag
     3961 tggtatccta cttggagcga ttgtcatgct tgtttttggc tacgatccaa tttgggggta
     4021 tgaagagtta ttctattcag cttttggtaa tatcaaatca attggtgaaa ttttccgtgc
     4081 aatggcacca ctggttttca ctgctctcgg tttcgcagta gctagtcgtg caggtttctt
     4141 caacgttggt ttgtctggtc aggcctatgt tggttgggtt tttgctggat ggtttgcctt
     4201 ggcaaatcct gacttaccac gtccagtttt gattttggga acagttttaa ttgccatgtt
     4261 ggcaggtggt attgctggag ctattccagg tattctacgt gcctatttgg gaacaagtga
     4321 agttatcgtt acgattatga tgaactacat cttactctat tcatgtaact atatcattcg
     4381 tgatgtattt gcagatagtt tgatgaagaa tacagactcg acagttaacg tgtcagcaaa
     4441 tgcctcttac caaacagagt ggctccgtgc attgacagat aactcacgta tgaatattgg
     4501 tattttcttt gccattattg cagtttttgt gatttggttc ctattgacca aaacgactct
     4561 tggttttgag attcgctcag tggggcttaa cccaacagca tcggattatg cgggtatgtc
     4621 tgcgaaacgt acgattattc tatctatgat tatttcaggt gctcttgcgg gtcttggggg
     4681 agctatccaa ggtttgggta ctttccaaaa cgtttatatc caaagcggta acttggatat
     4741 tggttttaat ggtatgtcag tagcgctttt agcttctaat tcaccgttag gtattccatt
     4801 ggctgccttt ctattcggtg ttctttctgt cggtgcccca ggtatggtac gtgcacagat
     4861 tccacctgaa ttgatcaacg ttgttacggc atcaatcatt ttctttatcg gtgtgaaatt
     4921 tatttttgaa caattattaa aatctagaaa taaagcgaaa ggagcgaaat aagatgaatg
     4981 tttcaattct tgccttactc atttcgcaaa tgttgattta ttcagccccc ttaatcttta
     5041 ccagtcttgg aggagttttc tctgaacgcg gtggtattgt aaacgttggt ctagaaggaa
     5101 tcatggttat cggtgccttt gctggtgttg ttttcaatat cgaatttgca gggacatttg
     5161 gtaatgctac tccattatta gctgttattg taggaggtct tgctggtgtt gtttttgccg
     5221 ctattcatgc gatggcgacg attaatttcc gtgcagacca cgttgtatca ggtacggtgt
     5281 tgaacctttt ggctccagca ttgggagttt tcctagtcaa agttatctat aataagggtc
     5341 aaactgatag tattactgaa tcatttggta aattttcatt ccctatcttg gcagatattc
     5401 caatcattgg tgaaattttc ttcaaaaata caagcttgat gggttatgta gctattgcaa
     5461 cagcatttct tgcttggttc atcctttata aaaccaagtt cggtttgcgc cttcgttcag
     5521 taggtgaaca tccgcaggca gcggatactt tgggaatcaa tgtctacgct atgcgttatg
     5581 caggtgtgtt gattgctggt ttccttggtg gtgttggtgg agctgtaagt gctcaatcag
     5641 tgaatatcaa cttctctgca acaacaatcg taggttcagg tttcatcgct ctagcagctg
     5701 taattttcgg taagtggaat ccaattggcg ctatgctcgc cagtctattc ttcggtcttt
     5761 cgcaaagttt ggcagtagtg ggtggacaat taccaggatt gaaagatatt ccaacggttt
     5821 atcttcaaat tgcaccatat ttgattactg ttattgctct gtctgctttc tttggtaaag
     5881 cagtcgctcc taaagcagac ggtatcaact atatcaaatc taaataaaaa ggtccagtgg
     5941 acctttttat catgagcttg aaaatacgaa agcgaataag gtctagtgga cctttttatc
     6001 atgttctttg ctgtacagga aatgaataat tgtcctattc aaaggaagag gagttagagg
     6061 gacttttggt tgagaatagg aagaatgact ggtataatag tttgtcacta aggtatgaaa
     6121 tgaggttaat tgtgagacga ttggtgttaa acattgcaat gagtttagat ggatttattg
     6181 cacgtaagga tggaagctac gattggattg aaggacatgg taccgataaa tacgatacag
     6241 tcttacagtt tgataatcaa aaattcttta acaactgtga tacagttgtg atggggagaa
     6301 aatcattaga agattgtccg ttggaaatga ttgaaggaca tcaggaaaag caatttatcg
     6361 ttgcgagtca taccgagtat acgaactatg gtaatgtgcg tttcgtaagg ggcatcattg
     6421 gggagattat ggaacttcgt tctagagaag gtggagatat ttggttgttt ggtggagcaa
     6481 gtctggttca ggactgttta gaggtgggag tgattgatca ccttattatt gggattattc
     6541 ctactatttt gggtgacggt attccacttt tcgcctcact tttggaagaa aagaagttgc
     6601 tattggtaga gtccactgtc acagatggaa ttgctatgtt acgttatgat attagaaggt
     6661 aaaaaaggcg agctattgct cacctttttt actattttat acaattagtt tttaacacca
     6721 gctgcaattt ctgggtttgc gaaagcatca tcgatgatgt ctttcaattg tttagcagat
     6781 gcttgcattt tttgcaattc agcttcgctc aatgggatat tgactggacg aacgatacca
     6841 tgggcaccga tgatagcagg ttgaccgatg aagacatctt caacaccttc gtattggcca
     6901 gcttggtaaa ctgacaatgg aagtactgca ttttcatcat caaagattgc tttagtgata
     6961 cgtgcaagtg caacaccgat accgtagtaa gttgcgcctt ttttgttgat gattgagtag
     7021 gctgcatcac gaacagatac aaacaagtca acaagacctt gctcatcaat atcgcggtta
     7081 tcttgcaacc agtcgtacaa tttcacacca gcaacgttgg catgtgacca aactgcaaat
     7141 tctgagtcac cgtgctcacc catgatgtaa gcgtgaactg aacgtgcgtc gataccgatt
     7201 ttctcagcca atgcttgacg gaaacgagct gagtcaagag aagtaccaga accgataaca
     7261 cgctctttag ggaaaccaga gaatttccaa gttgagtaag tcaatacgtc aacagggtta
     7321 gcagcaacaa ggaagatacc gttgaaacca gagttaacga tttctgtaac gatttgttgg
     7381 ttgatacgaa ggtttttctc taccaattca aggcgagttt cacctggttt ttgtggcaaa
     7441 ccagctgtca atacaaccaa gtctgcgtca tgagcatctg aatactcagc agagtagatt
     7501 tttttaggga atgtgaaggc caatgcgtgg ctcaagtctt ctgcatcacc ttgagtacgg
     7561 tctttgttga tatcgatgat acccaattct tgaccaatcc cttggttaac aagagcataa
     7621 gcataagcag aacctacggc accgtcaccg acaaggatta cttttttgtg ttgtttagtt
     7681 gcagtcattg ctaaacatct ccttagtttt atttggggat gacttcatcc caaccataat
     7741 acattctagc atgttttaag ctttttgtca cttgtgaaag cgcctttgaa aatgtttaca
     7801 tgctagtttc caacaaagaa atttattcgc caatatggta taatagaagc acaatgactg
     7861 ttgaaagagg catataatgc aagataaaaa cttagtaacg gttaatctga ccaatgagat
     7921 gaaatcatcc ttcatcgact atgcgatgag tgttatcgtt tcacgtgctc tgcctgatgt
     7981 acgtgatggt ctgaagccgg ttcatcgccg tattttgtat gggatgaatg aattaggaat
     8041 tacaccggat aaaccacata aaaaatcagc ccgtatcaca ggggatgtta tgggtaaata
     8101 tcacccgcat ggagatagtg cgatttacga agcaatggtt cgtatggcac aatggtggag
     8161 ctaccgtcac atgttagttg atggtcacgg aaactttggt tccatggatg gcgacggagc
     8221 agccgctcag cgttatacag aagcacgtat gagcaagatt gcgcttgaaa tgcttcgtga
     8281 tattaacaag aacacggtaa attttgcgga taactatgac gcgagtgaac gtgagcctga
     8341 ggttttacct gctcgtttcc ctaaccttct ggttaacgga acgactggta tcgccgttgg
     8401 tatggctacc aacattcctc cacacaactt gggtgagact atcgaggcag ttaagctggt
     8461 tatggacaat cctgaggtaa caacacgtga gattatggaa gtcttgcctg gaccagattt
     8521 tccgacaggt gccttggtta tggggaaatc tggaattcac cgtgcttatg aaactggtaa
     8581 aggttcaata gttcttcgtt cccgcacaga gattgaagaa tatggaaatg gtcgtgaacg
     8641 cattgttgtt acagagtttc catatatggt caataagtcc aaggttcaag aacatattgt
     8701 taaattagtc caagaaaaac gtattgaagg aatcactgct gttcgagacg aatccaaccg
     8761 tgagggtgta cgatttgtta tcgaagttcg tcgtgatgcc tctgctaacg ttattttgaa
     8821 taacttattc aagcaaacac agcttcaaac caactttagt ttcaacatgt tggccatcca
     8881 aaatggtgta ccgaaaatcc tttctgtacg tcagattcta gagtcttata ttgaacatca
     8941 aaaagaagta gtcactcgtc gtacacgatt tgataaagaa aaggctgagg cgcgtgctca
     9001 tatcttagaa ggcttgctga ttgctcttga ccatattgat gaagtcattc gcattatccg
     9061 taattcagaa actgatgcta ttgctcaagc tgaattgatg gagaaatttg acctttctga
     9121 acgtcagagt caggccattc ttgatatgcg tcttcgtcgt ttgacaggtt tggaacgcga
     9181 caagattcaa tcagaatatg atgagttagt ggccttgatt gcggatttgg ctgatattct
     9241 agctaagcct gagcgtgttg ttcagattat taaagacgaa ttagaagaag tcaaacgtaa
     9301 atatgctgac ccacgccgta cagaattgat ggttggtgaa gttctttccc ttgaagatga
     9361 ggacttgatt gaagaaacgg atgttttaat caccttgtca aaccaaggct acatcaagcg
     9421 tttggcacag gatgagtttc aagctcagaa gcgtggagga cgtggggttc aaggaactgg
     9481 cgtcaaggat gatgattttg tacgagaatt agtctctaca agcactcatg atcgcttgct
     9541 cttcttcact aacaagggac gtgtctaccg tctcaaaggc tatgaaatcc cagaatatgg
     9601 tcgtactgca aagggacttc cagtggtcaa tttgcttaaa ttggaagaaa acgaggcaat
     9661 tcaaaccatt atcaatgtaa ctaaggacca ggaggcagat agctatctct tctttgcaac
     9721 tcgccaaggt gttgtaaaac ggactagtgt gtcagaattt gccaatattc gccagagcgg
     9781 tctgaaagct ttgaatttga aagaagacga tgaactcatc aatgttttct taacaaatgg
     9841 ccaagcagac attattatgg ggactaagtt cggttattct gtacgtttca ctgaaacaga
     9901 tgttcgtaat atgggccgta cagcaacagg tgttcgtggt atcaatttac gcgagggaga
     9961 ccagttagtt ggcgctacta tgatttctga tgaccaagaa gtactcgtat tgactgaaaa
    10021 aggttttggt aaacgtacac cagctagtga gtatccaacc aaaggtcgtg gtggtaaggg
    10081 tatcaagact cttaaagttg ctgataagaa tggttctctg gcaggtttga caacggtatc
    10141 tggtgatgaa gatattatgg ttattaccga tactggcgtt attattcgta caagtgttgc
    10201 caatatctct caaactggtc gttcaaccat gggtgtaaaa gtgatgcgct tgaatgatga
    10261 agcgaaaatc atgacctttg ccttggtaga tgctgccgaa attaaagaag aaaaggaata
    10321 aatagtcatg tcaaaacgtg aaaacaagaa gaagcgtaaa ggttcttttt ggcgcaatct
    10381 tttaacagtt gtattgatac tgatttccct agcgttgata ttcaacacct ctatccgtaa
    10441 ttttattatc ggctggaata cgaataaata ccagattagc aatgttacga cagaggatat
    10501 cgaaaagaat aaacaggctg aaacaacatt tgatttcgat caggttcagt ctatttctac
    10561 agaggctatt ttagcagctc agtgggatgc acaacgctta cctgtaattg gtggaattgc
    10621 ggttcccgag cttggtatca accttcctat ttttaaaggg gtcttcaata cttcgctcat
    10681 gtatggagct ggtaccatga aggaaaacca agagatgggg aaaggaaatt atgcgttggc
    10741 cagccaccat atttttggtg taactggtgc ggcagatgtt ctcttttcac cgcttgatcg
    10801 tgccaaaaac ggcatgaaaa tctatattac tgacaagacc aatgtttaca cctacgttat
    10861 tgatagtgtg gaaattgttt cgcctgaaag tgtctatgtc attgatgatg tagaaggacg
    10921 tacagaggtt acgttggtaa catgtacgga ctataatgca acgcaacgta tcattgtaaa
    10981 aggagttctt gaatcaacaa ctccatataa tgaaactgca aaagacatct tagattcctt
    11041 caataagagt tataatcagt atgattatgg acaataaaac atctatatat taaggataaa
    11101 gaagtggtat aagactgagg agataatctt tggttttata tggcttcttt ttttgcaaga
    11161 ttttacgaat agataggtga ggaggaaatt atgtatcaaa ttgaatttaa agaagaggcc
    11221 attctaccta gagaacgttt agtagaagtt ggagctgagc gtctcagtaa tcaggaacta
    11281 ctagcaattt ttattagaac cgggacaaaa aaagaacctg tttctattct ctccaataaa
    11341 ttattgaatc gtttggagag tttagcggct ctaagagaac tatcaattga agaattgcaa
    11401 agtttgactg gcattgggcg cgtcaaggcg attgaaatta aggctatgat tgaacttgga
    11461 aaacgtatca atcaatcaga gctactctta aatgagagaa ttttgggaag tgagaagttg
    11521 ggacgtaaga tgattcatga aatcgggcat aagaagcagg agcatctagt tgcactttat
    11581 ctcaatacac agaaccagat tatcagtcaa aaaacgattt ttattgggag tgttaatcgt
    11641 agcattgcag aaccacgtga aattttgcat tacgcagtaa aatgtatggc aacatcggtt
    11701 atcatcgttc acaaccaccc gtcgggttca gtacaaccta gtaggaatga tttgctattt
    11761 acggagaatt taaaagagtc ctgcgaaaag ctaggactag tattattaga tcatttaatt
    11821 gttggaaata aggattacta ttcttttaga gaagaaagtg agttatttta aagtttattg
    11881 acaatatagt ggaagagttc tttttcaatc tcacgtttac cgtagagtag ttcaggatgc
    11941 cattgaaccc ctaaaaattt agttgggtag gctgaatgaa ctgcttcaat aatctgttga
    12001 ttatctgata gtgcaatgat ttctaagtca ggtgctaagt ctctgatagc ctgacggtga
    12061 aatgagttca cactaggatc ggactcatat atgtcgtaaa gtggactatt ttgagtcagt
    12121 tgaatcgttt gactaacttc ttgtccgtct atgtcttgcc aatggtcaga aattgattga
    12181 tgaaggctac caccttgagc tacattgtag agctgtagac ctcggcagat accgaagata
    12241 ggtttctgat cttcctgggc agcccttatg agggccaatt caaactcgtc acgctttggt
    12301 agataattat cgctgtcaat agtcctttct tcgtgatagt aacttggctg gacattttgt
    12361 cctcctgtta ggatgagttt gtcaataaga tggatataat attttgccaa atctggctct
    12421 gtagctggaa ggatgagtgg gagcccacca gcatcttcaa tagcttgtac gaggcaagtc
    12481 tgggtataag aaagcagggg ttctgtatga tcccctgttt tatattcatt tccagaaata
    12541 ccaataactg gttttttcat tgcttatcct tttcgcataa agtagagtag tgtctgtaat
    12601 tcactagtca aatcaacata ctggacaacg acatcttttg ggacagacaa gttaactggt
    12661 gaaaagctca gaattccctt aacaccagct tcaacaagaa tatcggtcac ttcttgtgcc
    12721 ttgacgctgg gtaccgttag aatggctgtc tgagagtttg cttcgctgat acgttccttg
    12781 atttctgaga ttgcatggat tgggatattt tcatctgtcg ttccaacagc tggattatca
    12841 tctgcttcaa aagccatgac tattttcatt ttatttcgtt cgtggaagcg atagtgtagc
    12901 aaggcccgcc ccatattccc aacaccaaca agcataacat tggtgatgga ggtatcattt
    12961 agaatatccg caaagaaatc catcaactct ttgacattgt agccaaagcc acgacgacca
    13021 agctctccaa aataggaaaa atctcggcgg acggtagccg aatcgattcc gatagcttcg
    13081 gcaatttctt ttgaactagc tttttcaata tttccagcat agaaacgttt aaaaatgcga
    13141 taatagaggg atagacgttt ggcagtagca cgtggaatat cagatttttt atcgtttttc
    13201 actttagact cctttatttc gatagaatac gctttatcga ttatttatat attaaacagt
    13261 tctttattct attctagtcc aagtttgtga aaaaatcaac agattgattt taaaaaaaga
    13321 ttaaacagga aactgtctaa tctagtgttt gtaaatagcg atagagatct ccgattgtcc
    13381 ctttgtaatc cagagcttgt ccgttttgtg taatgctggt aactggataa tagtctggga
    13441 gggttaagca accggaaaaa gccagaatgg ctgcatcttt attctcaaat gtttggatac
    13501 gttcttgctt gtaagcgtca agatagtgaa tttcaatcat actaagcctc ttttgtaaag
    13561 atgtcacggt caatcaagct atccatgagg aaatagaatt tttcttgaat aaccttgtta
    13621 ctttctggct taaaaatgtt taccagatga agaccagact tgtcggtaat attaatttta
    13681 aaaccagtta ggtcttgatt gataataatt ttcaagagga atccttggtt tgaatttgga
    13741 atttcttcca gaagacgtgt aagctgatag tgacctgctt tggtttgttc aaaggtgtta
    13801 tcacggagtg tatatttttt aatagcaggg ctaatgtgat aagtaaaatt acaatctttt
    13861 aaggtaactg attgttggaa tgccatttta acctccaagt attttcttta gttcgatgat
    13921 aagagtatct atctcttctt ttgtattgat ttcagatagg ctgatacgaa tggattcttt
    13981 cagacgatgg gagtcttttc catacatagc ttctaaaaca tggctatttt ggacaacacc
    14041 tgccgtacat gcagaaccgc tagaaacagc aatacctgcc aaatctagtt gcataaggag
    14101 ttgttcatta agtttaccag gaaaaccgat attaaggaca tgagggagat gaggtccagc
    14161 ctgattgaga taatagtcta agccagacaa tccctcgata atatgttgtc gcagttcact
    14221 gacatgctta tgatgcgtat ctaaggactc atattgttct gttagggcag tcgccatagc
    14281 agcaatagca gggagattct cagtacctgc tcgatgttgc tgttcctgct ttccgccgtg
    14341 aatcaaggaa tcaaatttat gaactttact atacaggaat cccatcccct ttggaccatg
    14401 gaatttatgg gcagaggccg cgagcaagtc aattccgtag tcagagggag aaattgcaat
    14461 ttttccaatt gtttggacag catctacatg aaagacggct tgatgatcgg ctaggagctc
    14521 tccaatttcc ttgatgggaa gtagctgacc ggtctcattg ttagcaaaca tgacgctgac
    14581 taaaatagta tctggccgga gggcatcctg aatttgttga gcggtgatta cttggttgac
    14641 tggttggata taggttacct cgaacccaaa ccgttcctct agataccgca tggtatggag
    14701 gacagcatgg tgttcgatag ccgtagtaat caggtgtttt cctttggatt gatgcgcaag
    14761 tgcatagcct tgaatagcta aagtatcagc ttcggagcct ccagatgtga aaataatttg
    14821 ttcgggagag gcggagagaa tctgagcaat ctcttgacga ctttgtctaa gacattgatt
    14881 ggctttccga ccgctttgat gaatactgga ggggtttcca taattttctt gagccacttc
    14941 catcatccgt tggagtgcag taggagatag agcagtggtt gctgcattat ctaaataaat
    15001 caaagagtta ctcctagttt tctttttcag gactagtaaa tttgaaaagt gggctgagtg
    15061 gctgatgttc ttggatgcgg tggatggcat ctgcaatcaa gtcactagct gttaggaagg
    15121 cgatattttt aggatgctgt tctttgcttg caacagaatc ggtaactaat atttctttga
    15181 ttggtgcttc atctaagagt tgggctgcag ttcctgcaaa gagaccatgg ctggcaactg
    15241 cataaatttc agtagcacca ccgtcttgga caatttttga agcttgtgag aaagtgcgac
    15301 cagtattgag aatatcgtcc accaaaatag cctttttacc agcaacatca cctataatat
    15361 agccttcaga acgctcagaa tcatcttgag cgtagtcgat aatcgcaatc ggtgcattta
    15421 gaaattcagc gatattacgc gcgcgtttga taccagaatt tttaggactc acaatgacga
    15481 catcttctcc gcagagtcct ttttccatgt agtaggctgc aaaaagtggt tctgtaagga
    15541 gattgtctac tggaatatca aagaaacctt gaatttgtga agcgtgtaaa tcaagagtca
    15601 atacacggtc gacaccagct ttaaccagca tatttgcaac taatttcgct gtaattggtt
    15661 cgcgtggaga agcggtacgg tcttgacgag catagccgaa ataagggatg accgctgtaa
    15721 tggtgttggc actagcacgt ttacaagcat cgatcataat caataattcc cacaagtgat
    15781 tattgaccgg atagcttgtt gattggataa tgtagacgtc tacaccacgt acagattctt
    15841 caatgttaat ttgaatctca ccatcagaaa actgacgaga agacagcttt ccaagaggaa
    15901 ttccagcaga atcagcaatt ttttcagcaa tatcacggtt gctattgagt gagaataatt
    15961 taatgttatg ttcaccgagt ggttgtacca ttttaaagta actcctttta cacactgagc
    16021 ttttatgatg acataaaagt atttttacaa tagatagttc tattctatca aaaaaatgaa
    16081 aaattttcag tagtgaaact aaaaaatcaa ccttatttgg ctgatttttt atagttattt
    16141 catgtgggca gctgttcgtg caaccttact actagcatat ttgaattgaa ttgatttctt
    16201 cttaaggaat tcatcaaaaa gaattttccc tgcatctgca tcggtcactt caacttctaa
    16261 ttcgtaatct ttttgtccca cataatcatt ttcatcgagg gccataagac ctatagatgt
    16321 ctgtttctca tagcgttttg tcgtgaggct tccccagaca gcaagtttat caagtggaat
    16381 ttcggttgca gaaataatgt cagaaatttg tcctgctggt agttgaaaat tttccagtaa
    16441 atcatgagca gtttggatgt ctagaacttg gttatattct tgatttccga cttcttgtgg
    16501 aatttttaag gttagttctg ctgagtcctc aaaggtacga atacggagtg aaaagcggtg
    16561 attcttcata tctaggtttg gggtatcaat gtagtggttt gtttgaagaa ttgggctcac
    16621 atctgaaaag tcagtaagca ggcgtttgta ttcggatttg gtcagtaagg ttttatactc
    16681 aatttcaagg tggtttttca tgcagtaaac cctttcaatg tgttataata gattagtctt
    16741 tgtgttattc taatacaatt taaaagtttt gacaagaaag gggccgtatg gactttaact
    16801 gggaagaatt tttagacccc tatattcaga cagttggtga attgaaaatt aaactgcggg
    16861 ggattcgcaa gcagtatcgc aaggctaatc ggcattctcc aattgagttt gtcacaggac
    16921 gggtaaaacc gattgaatcc attaaagaaa aaatggccct gcgacatatt aaattggaaa
    16981 atcttgctca agatatgcaa gatattgccg gtcttcggat tatggttcaa tttgtggacg
    17041 acattgaaga agtattagct attttgcgga aacgcaagga tatgcaaatt gtgcatgaac
    17101 gggattatat caataatatg aaagcctctg gctaccgttc atatcatgtg gtgattgagt
    17161 atcctgtgga tactataaat ggcaacgaga cggttctggc agaaatccag attcgaaccc
    17221 tttccatgaa tttctgggct acaattgaac attctctgaa ttataaatat aaggggaatt
    17281 ttccagaaga aatcaagaaa cgcttggaag ttacagcaaa aattgcctat gaattagatg
    17341 aggagatgcg aaaaatccgc aacgacattc aagaagcgca ggccttattt gatcctgcct
    17401 atcgcaaact gaatgacggt gtgggcaaca gtgatgatac agatgaagaa tataggtaga
    17461 aaaaaaatcg ctctgctcgc tagtcgaaat cctaagagtg aagcagtgtc caaagaatta
    17521 tggacaaagt taaaagaagc aaattttatt ttgactccta aaaatccaga tattgtcatt
    17581 tctatcggtg gagatgggat gcttttatct gcttttcaca aatatgaaaa gttgattgat
    17641 cgtgtacgtt ttgtaggaat tcacacgggt catttggggt tttatacaga ttatcgcgat
    17701 tttgaagtgg acaagctgat tgaaaatctt aagcttgata caggtgctag agtatcgtat
    17761 ccgattttaa atgttaaggt caagatgaca gatggtcgca ttgtcgaggc gcgtgcctta
    17821 aatgaggcga cagtaaaacg tctttctaag accatggtcg cagatattat tattaacaat
    17881 gtgcccttcg aacgctttag aggggatgga atttcggttt caacgccgac aggctcaaca
    17941 gcctataaca agtcattagg tggtgctgtt ttacatccaa caatcgaggc attgcagatt
    18001 gcagaagtgg caagtttgaa caatcgtgtt taccgcacct tgggttcatc cgttgttgtc
    18061 cctaaaaaag acaagattgt gattgaacca aagcatagtg accgttactc gattgcggta
    18121 gacaataaga cttttgtcta tgatagtatt gaaagtatag agtatcagat agacaatagt
    18181 aagattcatt ttgttgcaac accgagtcat actagttttt ggaatcgggt taaggacgcc
    18241 tttattggag aggtggagta atgcggtttg aattcattgc tgaccagcat acgaaaatta
    18301 aaacgttttt gaaaaaacat ggtgtctcta aaggcctatt agcgaagatt aagtataccg
    18361 gcggcaatat ctgggtcaat gatatagagc aaaatgcaac ttacttgcta gatattggag
    18421 atagggttac aattgacata ccagctgagg aggatttaac gggaagtttg aaaccgattt
    18481 cctttccgct ggatattgtc tatgaagatg atcattttct ggcgataaat aagccagttg
    18541 gctacgcctc cattccttct gccttgcatt catccacaat cgcaaatttt gtaaaaggtt
    18601 atcttattga gcagaattat gagaataagc aggttcatat tgtgactcgt ctggataggg
    18661 atacatcagg cgttatgctg tttgccaagc acggctatgc ccatgcacga ctcgataagc
    18721 agttgcaggc aaagcttatt cataaacgtt attatgcttt ggtgaagggg aatgggcagc
    18781 tagaagagac aggggatatt attgccccta tcggtcgtcc agaagacagc atcattaccc
    18841 gttgtgtgac aaagaatgga aaatatgctc atacttccta tcgtgttgtg caatcgtggg
    18901 gagatattca tttagtagat attcaactac atactgggcg gactcatcag attcgtgttc
    18961 atttttctca cattggattt ccgttgttag gagatgatat gtatggtgga agtttggaat
    19021 gtgggataga acgtcaagcc ttgcattgtc ataatttggc cttcgacaat cctttttcag
    19081 ccgaaaggat tgatttggaa gcaccgcttc ctgaggattt tcaggctgtc atcaatcagt
    19141 taataagtaa ataaatttaa ggagtttgtt catgaaaatt tttgagcaat tagctacaaa
    19201 gctagagggt aaaaaagtac gtatcgtatt gccagaaggt gaagaaccac gtatcttgca
    19261 ggcgacaaaa cgtttggtaa atgagtcgga tgtagtaccc gtcttgcttg gaaacccaga
    19321 tcgtattaag atttaccttg acattgaagg gattacagaa ggttttgaaa ttattgaccc
    19381 agctcattat gatagatatg atgagatggt agctgctttg gtagagcgcc gtaaaggtaa
    19441 ggtatcagaa gagcaggcac atgagttgtt gaaagatgtt aactactttg gtgttatgtt
    19501 ggtatatatg ggcgtagtag aaggtatggt atctggtgcg attcattcaa ccgcttcaac
    19561 agttcgtcca gctcttcaaa tcattaaaac agagccaggt gtatcgaaaa catcaggtgc
    19621 cttcttgatg gtaaaaggtg aagagcgtta tatttttggt gactgtgcta tcaacattga
    19681 tccagatgct caaaccttgg cagaaatcgc tatcaactca gcacgtactg ctaaaatgtt
    19741 tggtattgat ccaaaagttg caatgctcag ctattctaca aaaggctctg gtgctggtcc
    19801 taaagtagat aaggttgttg aagctacaaa aattgctcaa aaattgcgtc cggagttgga
    19861 tttggacggt gaattgcaat ttgatgctgc ctttgttcct accacaggta aattaaaagc
    19921 cccaggttcg agtgttgctg gtcaagcgac tgtatttatc ttcccaggta tctcagctgg
    19981 taatattggt tataaaattg ccgaacgtat gggtggattt gcagcggtag gtcctgtttt
    20041 acaaggtttg aatcagcctg taaacgactt gtctcgtggt tgtaaccctg atgatgttta
    20101 caacttgacc ttgattactg cggttcaggc tttggagcac cgttaatatg aaatttttat
    20161 cacgatattt taaggactat attaaggaat ccatattagg tccagttttc aaactattgg
    20221 aagcttgttt tgagcttttg gtaccattaa ttatcgccta tatcgttgat acaattattc
    20281 caaatggcag ccagggaaac ctggttgcta tgcttttttt actggttggt atagcatgta
    20341 ttggaattat tgtttcacta atagcgcaat attattcagc taaagcagcg gttggagtga
    20401 ctaaagagct gacgaatgac ttgtatcaga aggttctttc ccttcccaag tctagccgag
    20461 atattctttc ctcatccagc ttgctgacac gattgaccag cgacacttta caaattcaaa
    20521 cgggtattaa tacttttctt cgtttgtttt tacgtgctcc aattgtcgta tttggttcgc
    20581 tcatcatggc attctatatt agcccaagtc tatctgccta ttttctagga atgattatcc
    20641 tattgatttt tatagtgaca gtcatttctg ttatgaccag tcgtatttat caatcgatac
    20701 gaaaagaatt agatggtttg gtggggcagg tacgtgagac agtgactggt tggcgagtga
    20761 ttcgtgcatt tggacaaaga gagcgggaaa ttaaggcttt tcaaggcata aatcagattt
    20821 ataagaagca acagttgcaa gctggttttt ggtctagtct tttatcgcca ttgacatttt
    20881 tagtggtcaa cggcaccttg ctcattctca tctggcaggg aaatatagcc atttcacaca
    20941 atttgttgga acaggggatg ttggtcgctc ttatcaacta ccttcttcaa attttagtcg
    21001 aattggtcaa gatgattatg gtcgtgtcta ctctcaacca gacttatatc tcagcgcaac
    21061 gcattcaaga ggtttttgac caaacatctg aggatgtaga gtctagtttg ccaatagtgg
    21121 ttagtgagga taaggagatt atcttttctg tgcgtcatct ttccttttct tatccaaaat
    21181 ctgctgagga gtccctgtct gacattgctt ttgacttacg taagggacag tttatgggaa
    21241 ttatcggggg aactgggtca ggtaagtcca ccctagtaga tttattgcag gcactctatt
    21301 cagtgccaac aagtcagctc cctctcttca ttgatggaaa aagtcctaag aatttaaaag
    21361 agtggcggca gcaaattgcc attgttccgc aacaggctca gctttttgct ggaactatac
    21421 gttctaattt atctttagga ttggaagaaa tatctgatag tgacctatgg tctgctttag
    21481 aaattgcaca ggctaaatct ttcatagagg ataaaggtgg tttggatagc cctgtcgaag
    21541 cctttgggaa gaatttttct ggtggacagc gtcaacgttt gaccattgca cgcgctattt
    21601 tacagaaagc accgatttta atcttggatg atgcgacctc tgctctggat tatttgacgg
    21661 agagtcgatt attagtggct attcgccagg aattaccagg tcaaaactta atcatggtgt
    21721 cacaaagaac caatagttta cggacagctg atcagatttt agtcttggaa caaggacgtc
    21781 aagttggact tggtcgccat gaggacttgc tgagaagctc tgctatttat caagaaattc
    21841 accaatcgca acaacaagga gaggaggata gctatgagac aagctagttt taaggaactg
    21901 gtcagattgg ttttacacca gccccttcga atgtccttga tgttggtggg aactttggtg
    21961 caagtccttc tgacagttta tctgcctatc ttgattggtc aggcagttga tgcagtattg
    22021 atagcaaatg gtcaggtctt gctcggtatc ttaggcaaaa tggtgatggt tatcttgctt
    22081 aatacgctgg tgcaatggta cttacctttg gtaaccaatc gcttggttta tggaatggtg
    22141 gccgacttgc gtgaacaggt ctatgtgaag ctgcaccaga tgcccctatc ttatctggat
    22201 cgtcaatcag tcggtgattt ggtggctcgt ttttcaagtg atagtgagca attaacaaat
    22261 ggactcttga tgattttcaa tcaatttttc ataggcatct tgaccatttt cctaaccatt
    22321 ttcactatgg ctaggcttga cttgacgatg atgttgctgg ttgtggcatt gactccggtt
    22381 tctctgcttg tggcacgcta tatcgctaag aaatcctatg gttattatag gcaacagact
    22441 caggcacgtg ggaggcaatc tcagcttttg gaagaatcca tcagtcaatt gacactgatt
    22501 caatctttca atgctcaaga gcaatttacg caagggtttc aagttgtgaa tgaccagtat
    22561 gcgacctatt cccaacaggc catctttgcc tcttcaacgg tcaatccaag tacgcggttt
    22621 atcaatgcta ttatttatgc cttacttgca ggacttggag cgctgagaat tatggcagga
    22681 aattttacag tgggatccct gacaaccttc ctcaattatg ctagtcagta cagcaagcct
    22741 tttaatgata tttcctcggt cctatcggaa ttgcagagcg ccttagcttg tgcagacagg
    22801 ctgtttgcta tcttggctct agatagcatt gacgatcagg ctgagcggaa aattgattca
    22861 gaggagttga agggagctat ttcctttgac aatgtgtctt tctcctatag tcctgaccgt
    22921 tctttgatag aacatctgga cattgatgtc aaagctggac aaaaggtagc cattgttgga
    22981 cctactggtg ctggtaaatc aaccatgatt aaccttctta tgcgtttcta tgatgtgacg
    23041 gctggtcaga ttgttctaga cggggttccg attagccagt acagtcgtga ggatctccgc
    23101 agacagattg ggatggtttt acaggagaca tggatcaaat ctggtaccat tcatgataat
    23161 attgcctatg gctatccaaa tgccacgcgg gaattggtca ttgaggcggc taaggcagct
    23221 aatgcagact tctttattcg tcagcttcca cagggttacg atacggtttt ggcagatgga
    23281 ggagaaggct tatcccaggg acaacgtcag cttttgtcta ttgcgcgtgt ctttgttaaa
    23341 atacctaaaa tcctgatttt agatgaggcg acttcctcta ttgatacacg gacagaaatt
    23401 ttagtacagg aagcatttgc caaattgatg gaaggacgga ccagttttat tattgctcat
    23461 cgcctatcaa ccattcaatc agctgacttg attttggtca tggtggatgg aaaaattgtt
    23521 gaacagggga atcatgaagc gttgatggct aaacaaggcg tttattatca aatgcaaaca
    23581 agtcagcaga cagaggagga tgaaagtgtt agataaatta aacttacaac cgattacggt
    23641 tttagatgac tatcaagcta caatgctcaa tgagaaagag gtgctactga ctacaaaggt
    23701 gacggaaaaa tctctcaatc catacggtat ggcacatgga ggctttcttt tcacattggc
    23761 agattcagtt gcaggtctga caacggtagc aagtggttct tattctgtca ccctacagtc
    23821 caatatccat tatatgaagg cagctaaact tggcgatacc ttatcagtaa taggctcttg
    23881 cacacatgat ggaagtagaa caaaggtcgt cgaagttaag atagaaaacc aagataaaca
    23941 gctacttgct tcagcaagct ttaccatgtt tgtaacagga aaagtagaat aaaactcttc
    24001 gaacatcaaa agcagacagt cttggctaga tttagagaaa caaattcgtt cgctctattt
    24061 ccaacctcca aaggttcccc aaacctttgg agctaatttg attttgatta taaacgatat
    24121 aagggagttg gcaaaagctg gctccctttc tttgtgttat actagatgta tgttaaattt
    24181 gaaagaatat ggaatcgaaa tgtggccgga ggaaaagatt caagcgtttc gcaaggcact
    24241 cttagattgg tatgatgcca ataaacgtga cttgccttgg agacggacca aggatcccta
    24301 tgctatatgg gtgtctgaaa tcatgcttca acagacaaga gtagacacgg tcattcctta
    24361 ttatgaacgt tttctccatc acttgcctac gattagtgat ttagcacaag caccagagga
    24421 ggtcattctc aaactctggg agggattggg ctattattcg cgcgtgcgga atatgcaaaa
    24481 ggcagcgcaa caaatggtag aagattttga tgggcaattt ccgaccacgc atgcagccat
    24541 ttcaagccta aagggcattg gtccttatac tgctggagca atttccagta ttgcttttaa
    24601 tttgccagaa ccagcggtag atggcaatgt gatgcgggtt ctcagtcgct tgtttgaggt
    24661 tgattatgac attgggcttc ctgccaatcg caagattttc caagcgatga tggagctatt
    24721 gattgatcca gagcgaccgg gcgatttcaa ccaagctctg atggatctag ggtcggatat
    24781 tgaatcgcca gttaatccac gtccccagga cagcccagtc aaagccttta gcgcagccta
    24841 cttaaacggt acaatggata agtatccaat caaagcacca aagaaaaagc cgattcccgt
    24901 ggcctaccag ggatttctaa tcaggaataa agacaatcaa tttttattgg aaaaaaataa
    24961 tgaagcaggt cttctatcag gtttctggtc ttttccgctt ttggaaaaag gagcaatcgt
    25021 tgaaaaacaa gtctctctct ttgaagttgc agaagaagtt gttcagccag atattcggca
    25081 gagctttacg gaactttatg gtctgactgt tgattggcaa gagcaagaat ttggcatcgt
    25141 ccagcacatt tttagtcacc gcaaatggca gatagaaatg gtagaaggtg tggcagaaac
    25201 acttaacctt ccagaatcaa aagaattgaa atgggtttct gtagaagatt ttcctaccta
    25261 cccatttgct aagccgcaac aaaaaatgtg ggaaaacttt atcaaggaaa aagaaaagca
    25321 aaaaagttga ctttggagcg cataattatt tgaaagcgtt taacaaaagt ggtataatct
    25381 aattgaaaaa aggaaatagt tagttaagat gttgaacgcc atctgaattg ctgaaaggag
    25441 ttctttagcg ttcgtagaag tgtatatact attagccatc tttctctaat aaaaagagag
    25501 ggatgctagt aggggaaaag tccgttatcc ctgttttata tctatttgtg atatccattg
    25561 tcaaatgcgt agcataactt acaattagcc ttgctaccca gttcactcaa aagtaggcta
    25621 agaatattcg tgtcgtaact actatgtgtt caagatgttg taacttttga acataacctt
    25681 agaaaatcac aaaaacctat agagaaaatc acaaaaacct ctagcgattt tcatcataat
    25741 aagcaatctc cacactttag acaaatagta agaggacaat caaagacata agggtagcag
    25801 aataattatt taatcattaa cttgttgtca aataactatc tggtaatgga cttttccaat
    25861 ttgacatata aaagggaggc tgtcatagcc tccttttact gtgcttttca gtttgttttc
    25921 agtaggaaaa aacgccagct atacgaacag actttccaaa actagatgga tgaatgtagc
    25981 atatataact agtgattaac taggcttaga aatcaatctg gactataaat atctacaact
    26041 tgaccaatag gtcgaatatc gtcttctggg ctaaaataga tatcatcata gtcagaattg
    26101 agtgattgca aatagtcacc tttgaatttc ttaacaaaat tttctccgtt tactgaaaaa
    26161 attccaatcg tatttagagg aatatgagga gttaggcgaa tgaagagata gtctccatcc
    26221 tcgatatgcg gagccataga atctcccaca acctgagcga ttgtatcata agattggtta
    26281 tctggaatct catcgttata gaatgataca agattgttca tatctgtatc ctgccagtaa
    26341 cctgtaccgg cagaaacctt accaggaaca ggtaattcga ttcgctcccg atagtcatcc
    26401 aagtgaagaa tagaagcaga aggagtaact gaggtagttt gcatagctgc taactgttct
    26461 tgaccaaaag ttaaccattg tgcatggaaa tcacctttta attcattgtc caaggtttga
    26521 acctctggat gaataggctg ttgaaagagt ttaaattggg aaggagtaat cgttaaagca
    26581 atatcctgat tagaatctag ttgctcaatt agctcaccaa ccgatatagc catgccctta
    26641 gcgacttttt ctagcgtatc catcgttggc aggagagctt ttttggtttt gggatgctgg
    26701 ttcttttcca acatagaaat ataacctttt gttaaaccag ataattcagc gaatttatcc
    26761 attgataatt tattcttgct tcggtattct ttta
//
LOCUS       DASGAC010000011        26547 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.011, whole genome shotgun sequence.
ACCESSION   DASGAC010000011 DASGAC010000000
VERSION     DASGAC010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 26547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26547
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.011"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..318)
                     /locus_tag="U1335_000376"
     CDS             complement(<1..318)
                     /locus_tag="U1335_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000564846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HEM5230889.1"
                     /translation="MIDFLLSIEEHKEEYDSRQAWKIRYPLFIILFLVFACQLAGTET
                     WKEMGVFIEMNESVLGEYVDLSVGCPSHDTLERVVSMVNPDFLKELKLSFEVSSEATD
                     FSKL"
     gene            complement(523..2604)
                     /locus_tag="U1335_000377"
     CDS             complement(523..2604)
                     /locus_tag="U1335_000377"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013357.1,HMM:NF020070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GBS Bsp-like repeat-containing protein"
                     /protein_id="HEM5230890.1"
                     /translation="MRSKYMKSLGLGATCLLAMSVPVAANTTETNQSSDAPGAQVSAT
                     QATSSEEITVTETNISSSAQTDTSTAATEEPSVSRRSAPETEESSTTEASSVTSSTSI
                     TSTTTTQTESAPATQAEATIEQALYRLYQPDLRVHLYTKDANEYAVLAGRGWRQEGEA
                     WRFVSNQGEPVYRLYQPDLRVHLYTKDANEYAVLAGRGWRQEGEAFRSHGNIPVYRLY
                     HPGLRVHLYTKDANEYTVLAGRGWRQEGIAFYGLGSAGSSTASNTPVAPQVAKKPTGT
                     VSIQNKNSQNGNFDIIVSNVDSPLGVSSVLVPVWSDEKGQDDLVWYEAARQADGSYKV
                     SVQSKNHGYSTGTYQVHLYLVQKDGTKIGISPSTTTTVEIKDTVPKATVRIENIDRTY
                     GFFDVRITDLYVPKGIESIQAAVWADVGGQNDVQHYEATKQSDGSYLVPVRISNHKYE
                     QGNYSISLSITSQGQKHNVAQANTSISYTKTEIPRFIDVSSHNGTLSVADYKTLAANG
                     ISGVVVKLSEAVSYLNPYAEGQVKNALAAGLKVSVYHYSHFTSKEEAKAEAQYFVAAA
                     KKLGLPTSTLMVNDIEEYATRKNINDNMKAWEEEMRRLGYSNLIHYTGASWLDDNSLG
                     VVGPIQTSQFGMTNFWVAQYPYSTMTPAQAMSMSLHARTAAWQYTSKATLLPGRSFFD
                     VNLDYTNRFTK"
     gene            complement(2832..3344)
                     /locus_tag="U1335_000378"
     CDS             complement(2832..3344)
                     /locus_tag="U1335_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComGG"
                     /protein_id="HEM5230891.1"
                     /translation="MLLKKKVKAGILLYALLMLAVFSLLLQFYLHRQEAESRLVQVAR
                     QETTAYIMAQMVLEQVEEDLQERVAIANKVARQTDEMKEDKETASETANIKEEGEVQE
                     TTSTKPEPTTKSVDTSSTQNVESKPIEDKGAVTFQEGQANYHVKDKQLLVMVLLRNGE
                     QYDYQFAIKK"
     gene            complement(3322..3756)
                     /locus_tag="U1335_000379"
     CDS             complement(3322..3756)
                     /locus_tag="U1335_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEM5230892.1"
                     /translation="MLKSKIPAFTLLECLVALVILSGSLLVFESLSKLLVQEAHYQRQ
                     SVQKEWLVFSSQLRSEWDQAELVKVENGKVYVNKGEQALAFGKSRSDDFRKTNDRGQG
                     YQPMIYQVDSAAIFQENQLVRIDFSFKNGEERTFIYAFKEKS"
     gene            complement(3743..4036)
                     /locus_tag="U1335_000380"
     CDS             complement(3743..4036)
                     /locus_tag="U1335_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002282213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Type II secretory pathway, pseudopilin PulG"
                     /protein_id="HEM5230893.1"
                     /translation="MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAW
                     ELEQQEVLNLAQMAVQTEQDNLALNGVTVQVQRTADKIIVFHEGKEVLSVVKK"
     gene            complement(4008..4415)
                     /locus_tag="U1335_000381"
     CDS             complement(4008..4415)
                     /locus_tag="U1335_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEM5230894.1"
                     /translation="MLRRKNKAFTLFESLLTLLVVSFLAISLSGTVQTVFRSVQEEIF
                     LWEFEAIYKDSQKLAASSHQKVNLAIGGQEVTNGCQAVEVPGNVEVLEEKNIKFEENG
                     GNSSLTKIRFRLSRKTVTYQLYIGSGRYKKTEE"
     gene            complement(4396..4677)
                     /locus_tag="U1335_000382"
     CDS             complement(4396..4677)
                     /locus_tag="U1335_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEM5230895.1"
                     /translation="MKKLIEMKVKAFTLVEMLVVLGIISLLLLIFVPNLSQQKDAIQK
                     KGNAAVIKVVESQMELYELEHDKEATVADLQADGYITEKQAEQYAKAKK"
     gene            complement(4679..5644)
                     /locus_tag="U1335_000383"
     CDS             complement(4679..5644)
                     /locus_tag="U1335_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEM5230896.1"
                     /translation="MARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSD
                     GLLAGKPFSSLLADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEV
                     ATYPVILLGFLLLIMLGLKNYLLPQLEEGNVATVLINHLPTIFLSLCGLSLVAVLAGM
                     VWFRKTNKIKVFSRLSALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQEQQ
                     SQLFREIGQDLEQSLSNGQSFHEHIKTYAFFKRELSLIVEYGQVKSKLGGELTVYAAE
                     CWEDFFSRVNRAMQLIQPLVFLFVALMVVLIYAAMLLPIYQNMEL"
     gene            complement(5628..6578)
                     /gene="tadA"
                     /locus_tag="U1335_000384"
     CDS             complement(5628..6578)
                     /gene="tadA"
                     /locus_tag="U1335_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly complex ATPase component
                     TadA"
                     /protein_id="HEM5230897.1"
                     /translation="MIQEKARKMIEEAVADRVSDIYLVPRGECYQVYHRIMDEREFVQ
                     DVAEEEVTAIISHFKFLAGLNVGEKRRSQQGSCDYDYGSGEISLRLSTVGDYRGKESL
                     VIRLIYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
                     ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVI
                     RASLTGATVFSTVHARSISGVYARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAN
                     GDYQNHSADQWNEQIDRLFAAGHISLRQAETEKIALGSPA"
     gene            6664..7614
                     /locus_tag="U1335_000385"
                     /pseudo
     CDS             6664..7614
                     /locus_tag="U1335_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936565.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
     gene            complement(7761..8120)
                     /locus_tag="U1335_000386"
     CDS             complement(7761..8120)
                     /locus_tag="U1335_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1033 family protein"
                     /protein_id="HEM5230898.1"
                     /translation="MYQVIRMYGDFEPWWFLDGWEEDIVSKKTYERYEDAQKAFQKEW
                     VRLSEDFPMKKSKNGTMVAFWDESDQHWCEECDEYLQRYHSLMLVEARENLPAGFIKQ
                     PTQPRMRPCKLKQNIVI"
     gene            complement(8272..11919)
                     /gene="rpoC"
                     /locus_tag="U1335_000387"
     CDS             complement(8272..11919)
                     /gene="rpoC"
                     /locus_tag="U1335_000387"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEM5230899.1"
                     /translation="MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPERD
                     GLFDEVIFGPTKDWECSCGKYKRIRYKGITCDRCGVEVTRAKVRRERMGHIELKAPIS
                     HIWYFKGIPSRMGLTLDMSPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLR
                     EYGYGSFVAKMGAEAIQDLLKQVDLPKEIAALKEELKTASGQKRIKAVRRLDVLDAFY
                     KSGNKPEWMILNILPVIPPDLRPMVQLDGGRFAASDLNELYRRVINRNNRLARLLELN
                     APGIIVQNEKRMLQEAVDALIDNGRRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLG
                     KRVDFSGRSVIAVGPTLKMYQCGVPREMAIELFKPFVMREIVARDIAGNVKAAKRLIE
                     RGDDRIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLHPLVCEAYNAD
                     FDGDQMAIHVPLSEEAQAEARILMLAAEHILNPKDGKPVVTPSQDMVLGNYYLTMEDA
                     GREGEGMVFKDADEAVMAYRNGYVHLHTRVGIATDSLDKPWKDNQKHKIMMTTVGKIL
                     FNAIMPEGLPYLQEPNNANLTEGTPDKYFLEPGSDIKAAIAELPINPPFKKKNLGNII
                     AEIFKRFRTTETSALLDRLKDLGYYHSTLAGLTVGIADIPVIDNKAEIIEESHERVEQ
                     IKKQFRRGMITDDERYAAVTDEWRSAKEKLEKRLVEKQDPKNPIVMMMDSGARGNISN
                     FSQLAGMRGLMSAPNGRIMELPILSNFREGLSVLEMFFSTHGARKGMTDTALKTADSG
                     YLTRRLVDVAQDVIIREDDCGTDRGLDIRSITDGKEMIEPLEERLQGRYTKKTVKHPE
                     TGAVIIGPNQLITEDIAREIVNAGVEQVTIRSVFTCNTRHGVCRHCYGINLATGDAVE
                     VGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNSDITQGLPRVQEIFEARNPKGEAVI
                     TEVKGEVIAIEEDASTRTKKVFVKGVTGEGEYVVPFTARMKVEVGDQVARGAALTEGS
                     IQPKRLLEVRDVLAVETYLLSEVQKVYRSQGVEIGDKHIEVMVRQMLRKVRVMDPGDT
                     DLLMGTLMDITDFTDANAEVVIAGGIPATARPVLMGITKASLETNSFLSAASFQETTR
                     VLTDAAIRGKRDNLLGLKENVIIGKIIPAGTGMARYRNLEPQAINEVEIIEDTVAEEL
                     AAEAELEAVTE"
     gene            complement(12097..15669)
                     /gene="rpoB"
                     /locus_tag="U1335_000388"
     CDS             complement(12097..15669)
                     /gene="rpoB"
                     /locus_tag="U1335_000388"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEM5230900.1"
                     /translation="MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFLDYG
                     LKEVFEDVLPVSNFTDTMELEFVGYELKEPKYTLEEARAHDANYSAPIYVTFRLVNKE
                     TGEIKTQEVFFGEFPIMTEMGTFIINGAERIIVSQLVRSPGVYFNDKVDKNGKVGYGS
                     TVIPNRGAWLELETDSKDIAYTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVR
                     NTIEKDIHKNPADSRTDEALKEIYERLRPGEPKTAESSRSLLTARFFDSRRYDLAPVG
                     RYKINKKLNLRTRLLNQTLAEHVINGETGEIVLEAGTVLSRDVLEKVEAQFDELNLVE
                     YIPNDNAVLLEPVLLQKFKIVAPKDPERVVTVIGNANPAENVRIVTPADILAEMSYFL
                     NLAEGLGRVDDIDHLGNRRIRAVGELLANQVRIGLTRMERNLRERMSVQDNEVLTPQQ
                     IINIRPVTAAIKEFFGSSQLSQFMDQHNPLSELSHKRRLSALGPGGLTRDRAGYEVRD
                     VHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFIQTPYRKIDRATGTVTNEIVW
                     LTADEEDAYIVAQSTSPLDENNRFVDKIVMGRHQGNNQEFAADSADFMDVSPKQVVAV
                     ATACIPFLENDDSNRALMGANMQRQAVPLIDPKAPYVGTGMEYQAAHDSGAAIIAQHD
                     GKVVYADADKVEVRREDGSLDVYHISKFRRSNSGTAYNQRTLVKLGDIVEKGDFIADG
                     PSMENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYESETRDTK
                     LGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLL
                     HAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRANGDELQSGVNMLVRVYIAQKRKI
                     KVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLG
                     MAARNLGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEPFDNRVSVGVM
                     YMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQ
                     EILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDEDNNE
                     VELRDLDEGEDDDIIHVDDLEKARAKAAADAAAAFAAEEAEGKE"
     gene            complement(16756..19179)
                     /locus_tag="U1335_000389"
     CDS             complement(16756..19179)
                     /locus_tag="U1335_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEM5230901.1"
                     /translation="MATKSDKQDFKKKISALGLGDVVGVFLRTLKLLFNSVAVLVFLF
                     GLFGAGIGIGFVVSLFDDVKIPKTEELVAKVSEVSRISTVTYSDGSLVSEVNSDLLRV
                     PITSEEVSNYLKQAVIATEDETFETHNGVVPKAVLRAALGSVGLGSSSGGSTLTQQLI
                     KQQLVGDAPTFTRKANEIVSALALERNMTKEEILTIYLNVSPFGRNNQGRNIAGVEAA
                     AQGIFGKPAKDLTVPQAAFIAGLPQSPIVYSPYASDGTRKSDEDMVYGIERYQDVLFN
                     MYRASFLTKEEYETYKAYDIKQDFIAPAPVMADTKDYLYYEVMEEAQEVMFDYLVKRD
                     KVSENDLKNDETKASYEELAKQELSQGGYTIKSTVDQGIYAAMQSVVANYGSVLDDGN
                     EYVETGSVLIDNATGAILGFVGGRDYATNQNNHAFDTLRSPASTIKPLLAYGIAIDQG
                     LIGSASILSDYPTNFSSGQPIMYGSGRGTGMMNLQTAIDRSVNIPAFWTYKMMRNAGV
                     DAKAYMDKMNYHIPMYDIESVPLGGGVEISVLTNTNAYQTLANGGVYNKHYIVESITA
                     SDGTVVYQHEVAPVQVYSKATASIMNQLLRQVVNSGYTTTFKSRLSGLNPQAASSDFV
                     GKTGTSNEVNDVWLMLSTPRVTLGTWAGNDDNSEMYVWTGYHNNSQYVAHMVDALYNV
                     NADMFAGKFELDSSVIASSVVVSTGQRAGTTQVNGRQVTVGGAMTTSYWAKNGAPVTS
                     YNFMVGGTDSDRAQAWNTIIGSQTPTSSSSTQRSSSTRSRTSSSANNTNQSSETQTAT
                     SEQANNDSP"
     gene            19333..20589
                     /locus_tag="U1335_000390"
     CDS             19333..20589
                     /locus_tag="U1335_000390"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011184085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEM5230902.1"
                     /translation="MNIFEELKARGLVFQTTDEEALVKALTEGQVSYYTGYDPTADSL
                     HLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKDTVDGWVTKIQ
                     GQLSRFLDFENGDNKAEMVNNYDWFSDISFIDFLRDVGKYYTVNYMMSKDSVKKRIET
                     GISYTEFAYQIMQGYDFYELNDKHNVTLQIGGSDQWGNMTAGTELLRRKADKSGHVMT
                     VPLITDSTGKKFGKSEGNAVWLDADKTSPYEMYQFWLNVMDDDAVRFLKIFTFLSLDE
                     IAEIEKQFDAARHERLAQKILAREVVTLVHGEEAYKQALNITEQLFAGNIKNLSAKEL
                     KQGLSNVPNYAVQAEDNLNIVELLVTSGIVNSKRQAREDVANGAIYVNGERVQDLDYT
                     LSDSDKIDGELTVIRRGKKKYSVLTY"
     gene            20593..21375
                     /locus_tag="U1335_000391"
     CDS             20593..21375
                     /locus_tag="U1335_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1211 domain-containing protein"
                     /protein_id="HEM5230903.1"
                     /translation="MKNTKQNPKNQEFLNDYFEQIAQEASLLHPELEHLSADEHQAFL
                     DQLYREDETRRAKRLKEHLEVFSDAVIGVIITMMLLEIPLPSDTVDTHHFFTGILIFF
                     VSFFIVADFWYDNHKILGQIEHATSKILIVQFNFMATLALIPLFTRWMMEGITTTAVV
                     GYGVVTIAVNLCQSILNYFVLQEKFAGTTYTKRFVSMAHLRQLVTVALFNIVVILFAY
                     FNPTLAFYFYILRPIVSFLGAAFFEKKRQERKEKMAVRVNHI"
     gene            21429..21806
                     /locus_tag="U1335_000392"
     CDS             21429..21806
                     /locus_tag="U1335_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEM5230904.1"
                     /translation="MTCIFCHQLKEEDILYQTEHFKVVWDIDPVQTGHLLIISKEHYD
                     TLSQIPSAVRYELSDLEVFLTDKLCQALIIDGVTIASNDRLFDAGTHFHVHLIPRFRS
                     DGFWDQISLAQVQLDLNAFLKAL"
     gene            complement(21834..22043)
                     /locus_tag="U1335_000393"
     CDS             complement(21834..22043)
                     /locus_tag="U1335_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HEM5230905.1"
                     /translation="MKQTLKLKNLSCQNCVKHVTNHLLDLNGVEEVKIQLEEQLAEVE
                     TSVAYDLERYQEELDDTIYEVEDLI"
     gene            complement(22427..22891)
                     /locus_tag="U1335_000394"
                     /pseudo
     CDS             complement(22427..22891)
                     /locus_tag="U1335_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636197.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CopY/TcrY family copper transport repressor"
     gene            complement(22994..24505)
                     /locus_tag="U1335_000395"
     CDS             complement(22994..24505)
                     /locus_tag="U1335_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000724057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     AdcA"
                     /protein_id="HEM5230906.1"
                     /translation="MKKVGLLFLSVSALLLGACGNSTASEDGKLNIVTTFYPVYEFTK
                     QVAGDEANVDLLVKAGTEVHGYEPSAKDIARIQEADAFVFENENMETWVHDVEKSLDT
                     TKVNVISATEGMLLLPGGEEEHEGHDHSEEGHSHAYDPHVWLSPERAITLVENIRDSL
                     VAKYPEKKDAFETNAAAYIEKLDALDAKYSETLSAAKQKYFVTQHTAFAYLALDYGLK
                     QVSITGVAADEDPTPSRLAELTEYINKYGIKYIYFEENASKSVAETLAKETGVQLDVL
                     NPLESLTDEDMKNGKDYISVMEDNLTALEKTTSQEGSEILPEEGAETAQTVYNGYFED
                     SAVKDRTLSDYAGEWQSVYPYLLDGTLDQVWDYKAKIKGGMTAEEYKAYYDTGYKTDV
                     DQINITDNTMEFVVGDKKEKFTYKYVGYKILTYKKGNRGVRFLFEATDANAGNYKYVQ
                     FSDHNIAPVKTGHFHIYFGGESQEKLLEELENWPTYYPVGLTGLEIGQEMLAH"
     gene            complement(24515..25327)
                     /locus_tag="U1335_000396"
     CDS             complement(24515..25327)
                     /locus_tag="U1335_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEM5230907.1"
                     /translation="MFDLSVFHYDFMQRAFLAIIAMSFFSPILGVFLILRRQSLMSDT
                     LSHVSLAGVAFGLVLGISPTLSTVLVVIVAAVFLEYLRTIYKNFMEIGTAILMSTGLA
                     ISLIVMNKSGGKSGLSLEQYLFGSIVTISQEQVIALFTIAVIVIVLTLLFLRPMYILT
                     FDEDTAFVDGLPVRVMSIAFNVVTGVAIALMIPAAGALLVSTIMVLPASIALRLGKSF
                     KAVIFTGMGIGFFGMVMGLLTSYYAETPASASITLIFISIFLLVNVVQKFKK"
     gene            complement(25320..26024)
                     /locus_tag="U1335_000397"
     CDS             complement(25320..26024)
                     /locus_tag="U1335_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEM5230908.1"
                     /translation="MRYITVEDLSFYYDKEPVLEHIHYYLDSGEFVTLTGENGAAKTT
                     LIKATLGILKPKQGKVSIAEKSIKGKKLRMAYLPQQIASFNAGFPSTVYEFVKSGRYP
                     RQGWFRRLTAHDEEHVRISLESVGMWEHRDKRLGALSGGQKQRAVIARMFASDPDIFI
                     LDEPTTGMDAGTKDAFYQLMHHSAKKHGKSVLMITHDPDELNKYADRNIHLVRDQQSP
                     WRCFNVHEADEEVAHV"
     gene            complement(26025..26468)
                     /locus_tag="U1335_000398"
     CDS             complement(26025..26468)
                     /locus_tag="U1335_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent MarR family transcriptional
                     regulator"
                     /protein_id="HEM5230909.1"
                     /translation="MNRIALEIEKYLHEIVLSSENQLEILVGSCQSTVKLTNTQEHIL
                     MLIEKAAYTNTEIAKELNVSQAAITKATKSLVAQGLLVAVRDDKDARIVRFSLTEAAK
                     PIAAEHAHHHAHTLEAYEELLEHYSLEEQESIARFLSELVEKIRK"
BASE COUNT         7493 a         6339 c         5226 g         7489 t
ORIGIN      
        1 caattttgaa aaatcagttg cttcagaaga gacttcaaag gacagtttca gttcctttaa
       61 gaaatctgga ttgaccatac tcacaacacg ttccaaagta tcatgagaag gacagccgac
      121 actcaagtca acgtattctc ccaagacaga ttcgttcatt tctatgaaaa ctcccatctc
      181 cttccacgtt tcagtccccg ccaactgaca agcgaaaact agaaagagaa taataaataa
      241 aggatagcgg attttccatg cttgacggct atcgtactct tctttgtgct cttctatgga
      301 taaaagaaaa tcaatcaaag tagttcacct ctattctagt gtactacttt gattgatgtt
      361 tggttatgat tttcgctttc tgaaaacgaa attttcttca tgcgtttggc gtggtcgcta
      421 gtaaggaagc gcaatacgta gacacaataa aagctccact agttccgata atgaaaacat
      481 ccatcacaga gactgtggag ctatatataa tctggaataa ccctacttag taaatcgatt
      541 tgtgtaatct aaattcacat caaagaagga acgtcctggc aacaatgttg cttttgacgt
      601 atactgccaa gctgctgtac gtgcatgcag agacatggac attgcttgtg caggagtcat
      661 tgtagagtat ggatattgtg ctacccagaa attagtcatt ccaaattgac tagtttggat
      721 tggacctact actccaagag aattatcatc aagccagcta gctcccgtgt agtggatgag
      781 atttgaatag cctaaacgac gcatctcttc ctcccaagcc ttcatattgt cgttgatatt
      841 tttacgagtt gcatactctt caatatcgtt aaccattaga gtactggtag gaagtcctag
      901 tttttttgcc gcagccacaa aatattgcgc ctcagcctta gcctcttcct tgcttgtaaa
      961 atgagaatag tgataaaccg aaaccttgag acccgcagct aaagcatttt ttacctgccc
     1021 ttctgcataa gggtttaaat agcttactgc ctctgatagt ttaacgacaa cacctgaaat
     1081 gccgttagca gccaaggttt tgtaatcggc cactgataag gtcccgttat gactacttac
     1141 atcgataaat ctaggaatct ctgtttttgt ataactaatc gaggtattag cttgggcaac
     1201 attgtgcttt tgaccctgac tagttatgga tagagagatg ctgtaatttc cttgttcata
     1261 tttatggtta ctgattcgaa ctgggacaag ataacttcca tcagattgct ttgtcgcttc
     1321 ataatgttgg acatcgtttt gaccaccaac atctgcccag acggctgcct ggatggattc
     1381 tattccttta ggaacatata aatctgtgat acgaacgtca aagaaaccat aggttctgtc
     1441 aatattctca attctaaccg tagcttttgg aacggtatcc tttatttcta ctgtagttgt
     1501 ggtagaagga gagattccaa tttttgtacc atccttttgc acaagatata aatgcacctg
     1561 ataagttcct gtgctatagc catggttttt ggattggaca gatactttat agcttccatc
     1621 tgcctgtctt gcagcttcgt accaaaccaa gtcgtcttgg cctttttcat ctgaccatac
     1681 gggtacaaga acactgctaa cacctaaagg gctgtcaacg ttcgatacaa tgatatcaaa
     1741 attcccgttt tgagaattct tattctgaat actcacagtt cccgttggtt tctttgcaac
     1801 ttgtggcgct acaggtgtgt ttgaagctgt tgaacttcct gcactcccta acccgtaaaa
     1861 agcaatccct tcctgtcgcc aaccgcgacc tgccaatact gtatactcat ttgcatcctt
     1921 cgtatacaga tggacacgca agcccgggtg atagagacgg taaactggaa tatttccgtg
     1981 agaacggaag gcttctcctt cttgtcgcca accacgacct gctagaacag catattcgtt
     2041 ggcatccttc gtatacagat ggacacgcaa gtccggttga tagagacgat aaaccggctc
     2101 tccctgattt gaaacaaatc tccatgcctc tccttcctgt cgccaaccac gacctgctag
     2161 aacagcatat tcatttgcat ccttcgtata cagatggaca cgcaagtccg gctgatagag
     2221 acgatataag gcttgctcaa tagtcgcttc tgcttgcgtt gccggagcag actcagtttg
     2281 cgttgtagtt gttgaagtga tgctagtact gcttgttacc gaacttgctt cagtagtgga
     2341 actctcttca gtctcaggtg ctgaacgacg cgaaacactc ggttcttctg tcgcagctgt
     2401 actagtatca gtctgagcag aagaacttat attcgtttct gtgactgtga tttcttctga
     2461 actggtggcc tgcgtagcag aaacttgcgc tcccggtgca tccgaacttt gattggtttc
     2521 ggtagtgttc gctgcaacag gtacactcat agctagtaag caagtcgcac caagccctaa
     2581 acttttcatg tatttgcttc tcattcgtca tctcctattc tgaattcaag gtcattataa
     2641 catatttcct taggtgtttt caaatacttt ttcaagtgaa actccaaata tatcacacaa
     2701 tgataaaaag cacttctttt acgtcagaag tgcgacaaaa gagactctgt gcctcataat
     2761 ctacaattta tcaaatatac aacaaagttg atttcctagt tacagtagga agtctgctct
     2821 catgtcatat tttatttctt tattgcaaat tgatagtcat actgctcccc gttccttaat
     2881 aggaccatca ctaacaattg cttatcttta acatgatagt tagcctgacc ctcttgaaaa
     2941 gtgaccgctc ccttatcttc tattggtttg ctttccacgt tttgagttga tgatgtgtca
     3001 actgattttg tagttggttc tggcttagtg cttgttgttt cttgtacctc cccttcttcc
     3061 ttaatattag ccgtttcact agctgtttct ttatcttcct tcatttcatc tgtttgacga
     3121 gccaccttat tggcaatcgc tacacgctcc tgcaagtctt cttcaacttg ttccaagacc
     3181 atctgggcca tgatgtaggc agtcgtttct tgccttgcca cctgaaccaa gcgactctca
     3241 gcctcttggc ggtggagata aaactgaagc aaaagactaa aaaccgccag catcaaaagg
     3301 gcatagagca ggatacccgc cttaactttt ttctttaaaa gcatagataa aggtccgctc
     3361 ctctccattt ttaaagctaa agtcgatgcg cactagctgg ttttcttgga aaatagctgc
     3421 gctgtctact tgataaatca tgggctgata gccctgtcct ctgtcatttg ttttccgaaa
     3481 atcatccgac cgtgacttgc caaaggccaa agcctgttcg cctttgttga catagacctt
     3541 gccattttca accttgacca attcagcctg gtcccactcc gaccgcaatt gactagaaaa
     3601 taccagccac tccttttgga cagattgacg ttgataatgt gcctcttgaa ccaacagttt
     3661 tgacaagctt tcaaagacca gaagacttcc tgataggatg accaaggcta ccaagcattc
     3721 caggagagta aaagcaggaa ttttactttt taacaaccga taaaacctcc tttccctcgt
     3781 ggaaaacaat aatcttatcc gcagttcgtt gaacctgaac tgtaacaccg tttaaggcta
     3841 ggttatcttg ctcggtctga acagccatct gtgctagatt gagaacctcc tgttgttcca
     3901 attcccaagc ctgtcgccta cgacctgcat ccacagctga caaaatcaag ctgcaaatag
     3961 tcactagggt cgcaagggca accagacttt ctagcaaaat ataagcctta ttcttctgtt
     4021 ttcttatagc gaccactccc tatatataat tgatatgtga ctgtctttcg actaagccga
     4081 aaacgaattt tggtcaggga agaatttcct ccattttctt caaatttgat atttttctcc
     4141 tccaagacct ctacatttcc aggtacctct acagcctgac aaccatttgt aacctcctgt
     4201 ccaccgatag caaggttcac tttttgatgg gaactggctg ccaatttctg actgtcttta
     4261 tagatggcct caaattccca gagaaaaatt tcttcctgaa cagaccgaaa gactgtttgt
     4321 actgttcccg acaggctgat tgccagaaag ctgacaacca acaaggtcag caggctttca
     4381 aatagagtaa aagccttatt ttttcgcctt agcatactgc tccgcttgtt tttcagtaat
     4441 atagccatcc gcttgcaagt ctgccaccgt tgcttccttg tcatgttcca attcatagag
     4501 ttccatttga ctctccacca ctttgataac agccgcattc cccttcttct gaatagcatc
     4561 cttctgctgg ctcaaatttg gcacaaaaat gagcaagagc aggctaataa tacccaaaac
     4621 gactaacatt tccaccagag tgaacgcttt taccttcatt tcaattaatt ttttcatttt
     4681 ataactccat attttgataa attggcagca acatggctgc gtagataaga acgaccatta
     4741 aggccacaaa gagaaagacc agcggttgaa tcagctgcat ggctctattg acccgagaga
     4801 aaaaatcctc ccaacactcg gctgcataaa ctgtcaactc gccacccaac ttggacttga
     4861 cctgaccgta ctcgacaatc aaactcagct cccgcttgaa aaaggcgtag gtcttgatgt
     4921 gttcgtgaaa actctgacca ttggaaagcg actgctccag gtcctggcca atctcccgaa
     4981 aaagctgcga ctgctgctct tgcatcaagc ccacaatctg cggtaggtcc aagccttgcc
     5041 caatcaaact cccccactcc ctggcgtaat aggccgtcag gtaggtttgg atgagttttc
     5101 cgaaaaatgg cagagctgac aagcgggaaa agaccttaat tttattggtt ttgcgaaacc
     5161 aaaccatacc agctaagacc gccaccaaac taaggccaca gagggataaa aagatggtcg
     5221 gcagatggtt aatcagcacg gtcgctacat tgccttcctc caactggggc aaaagatagt
     5281 ttttcaagcc tagcataatc aagagcagaa aaccaagcaa gataactgga taggtcgcta
     5341 cctcaatcag ctttttacga accttgctga cattttccag ataggactgg atatggctca
     5401 aactcagact ggtattgcca tgaacttctg ccaaagccac ctgtgtgacc accgcatctg
     5461 aaaaacgcaa atccgccagc aaacttgaaa agggtttgcc tgccagcaac ccgtctgaca
     5521 agacctgggt atagggatct gccagaagct gactgcgttt gaggaaatca acaatctccc
     5581 ccagatgaaa accactagca aaaagattat tgaaaagctc aatgacctta cgctggcgag
     5641 ccaagggcaa ttttttctgt ttctgcctgc cgaagactga tatgtcctgc tgcaaaaagg
     5701 cgatcaattt gttcattcca ctggtctgcg gaatggtttt ggtaatctcc atttgcaaaa
     5761 tccactacac ctcctccccc gatcaagcgt tgataggcaa tgccttgaag ggcattattt
     5821 aactcttcag gactgacccc caattccaac atacgggcat aaacacccga aatagacctt
     5881 gcatgaactg ttgagaaaac ggtagctccc gtcaggctgg ccctgatgac cgcccgtgcc
     5941 gtttccgcat cccgaatttc accgataatg agcaagtctg gtcgatgacg gagggacagt
     6001 ttaatcagat tatcgtaggt agctccgatg gcttcattga gctggagttg cagcatgtcc
     6061 tcctgcttga tttcgacagg atcctcaatg gtcaaaatct gcttgtctgg gaatttcagc
     6121 ctggcaagat ggtacataag tgtggtctta ccagagccga ctggacccga aaaaaggtag
     6181 agccctcgtc ccttaatttc ttctgcaagt cgctcggccg cctcaaacca gaacttgagt
     6241 tccttgtcat tgtcatagat caggcggata accagacttt ccttgccacg ataatctccg
     6301 acagttgata agcgaagtga aatctctccg ctcccataat catagtcaca ggaaccctgc
     6361 tggctacggc gtttttcacc aacatttaaa cctgctaaaa acttgaaatg gctgatgatg
     6421 gctgttactt cctcctcagc cacgtcttgc acaaattccc gctcgtccat gatacgatga
     6481 tagacttggt aacactcacc tcgaggaact agatagatgt cactgaccct atctgccacc
     6541 gcctcttcaa tcatctttct tgctttttct tgaatcataa aacctcctca ccctatctat
     6601 tcgtaaggag acttgatttt ccattctttt ttgttaaaat aataaaaaag cttggaggtt
     6661 cctatgaaaa aattaaaaaa aggcgaccac atacgcgtag tcagtccttc ttcgtctatt
     6721 gaaagagttg gtggattcga ggccaatctt gctgccaagg aaaaactaga ggaacttggc
     6781 ttcaaactct ccttttcaga acattatttt gaaaatgata tgttcgattc ggctccgatt
     6841 gctagtcgag ttgcggactt ggaagcagcc tttgcggatg agtcggtcga tgccattctg
     6901 acaaccattg gcggtctcaa ctgcaatgaa ctcttgccct atctggattt tgagttgatt
     6961 gcacaaaatc caaaaatttt ctgtggttat tcggatacga ctgccctgct caatgccatc
     7021 tatgccaaaa caggtatgga aacctacatg ggaccatcct atagcagctt taagatgcgt
     7081 gagggacaag attaccagac tcaggcttga ctcaaggctg tgacacaaga ctcctttgac
     7141 ttgaccccga gtcctgaatg gtctagcgac gcttggtacc taccagacgc ccctcgcacc
     7201 ttttacccaa cagaatggaa agtctacagt ccaggtcagg cctctggtat tgccatcggc
     7261 ggaaacatct caaccctcaa tctgctgact gggacagagt tcgcacccaa accggacaag
     7321 tatattctct ttttagaaga ggcggaagac gacgattatc tcattatctc tcgtcacttg
     7381 actgcgcttt tacaagccta tccaaatccg caagcggtcg tctttggacg atttccaaag
     7441 gaaaccaaaa tgaccgagga gattctgctg accattttgg acaaacatcc tattctcaaa
     7501 accatccctg ttctctacga tttggacttc gcccataccc agccactctt taccattcgg
     7561 attggcgggc atgttgagct tgatgcggaa gcatttacta tcagatttag ctaaaaagga
     7621 ttgacccgca aaggtcaatc cttttttatt attcatttac gcaattatag tcgaatgaat
     7681 tagctttcag acaaggaact gtgaggtgca ggctgtacta gagtacggca agccgaaagt
     7741 gacgatgtat caaagttaat tcaaatgact atattttgtt ttaatttgca ggggcgcata
     7801 cgaggttgcg taggttgctt aataaaacca gccggtaaat tttctctcgc ttctaccaac
     7861 atcaacgaat gataccgttg taaatattca tcacattcct cacaccaatg ctggtctgat
     7921 tcatcccaaa aagccaccat tgtgccattc ttacttttct tcattggaaa atcctctgat
     7981 agccgtaccc actccttctg aaaagctttt tgcgcatcct cataacgttc ataggtcttt
     8041 ttactgacta tatcttcttc ccaaccatct aaaaaccacc agggttcaaa atctccatac
     8101 attctaataa cttgatacat aacacatact tcctttttcg tacacattat atcgaaatca
     8161 tctgatttaa gaaaacattc tgcttgttaa ttccttatca agtaatgtat gcgcttcatt
     8221 tccgaatatc aaaaagcaca tccctagaaa agagagatgt gccatcttaa tttattcagt
     8281 tacagcttca agctctgctt ctgctgcaag ctcttctgct actgtgtctt caatgatttc
     8341 aacttcattg atggcctgtg gttcaagatt acggtagcgg gccatacctg tacctgctgg
     8401 gataatctta ccgataataa cgttctcttt aagaccgaga aggttgtcac gtttaccacg
     8461 gatagcagca tctgtaagga cacgagttgt ttcttggaag gatgcggcag acaagaatga
     8521 gttggtttca agggaagcct tagtgatacc cataagaact ggacgagctg ttgccggaat
     8581 accacctgca ataaccactt cagcattggc atctgtaaag tctgtgatat ccatgagggt
     8641 acccatgaga agatctgtgt cacctggatc catgacacga actttacgaa gcatctgacg
     8701 aaccattacc tcaatgtgct tgtcgccgat ttctacaccc tggctacggt aaactttttg
     8761 aacttcagaa agaagataag tttcaaccgc caagacatca cggacttcaa gcaagcgttt
     8821 tggttggata gaaccttcgg taagggctgc tccacgcgca acttggtcac caacttcaac
     8881 cttcatacgg gctgtaaatg gaaccacata ctcaccttcg ccagttacac ccttaacaaa
     8941 gactttcttg gtacgagtag aagcatcttc ttcaatggcg ataacttcac ctttgacctc
     9001 agtgataacc gcttcccctt tcggattacg ggcttcaaag atctcttgga cacgaggaag
     9061 accctgcgta atatcgctgt ttgaggctac cccacccgtg tggaaggtac gcattgtaag
     9121 ctgtgtacct ggctcaccga ttgattgggc agcgattgta ccaactgctt cacccacttc
     9181 aaccgcatca cctgttgcca agttgatacc gtaacagtga cggcagacac cgtgacgagt
     9241 gttacatgta aatacgctac ggatggttac ttgttcaaca cctgcattga caatttcacg
     9301 ggcaatatct tcagtaatca attggtttgg accaatgata acggcacccg tttcaggatg
     9361 tttaacagtt ttcttagtgt aacgaccttg caaacgctct tcaagtggct cgatcatttc
     9421 cttgccatct gtgatagaac ggatgtcaag accacggtca gttccacagt cgtcttcacg
     9481 gataataacg tcttgggcaa cgtcaaccaa acgacgagtc aagtaacctg agtcggctgt
     9541 cttcaaggcc gtatccgtca tacccttacg ggcaccgtga gttgagaaga acatctcgag
     9601 tactgaaaga ccttcacgga agttagacaa gattggcaat tccatgatac gtccgttcgg
     9661 agctgacatc agaccacgca taccggccaa ctgggagaag ttggagatgt taccacgggc
     9721 accagagtcc atcatcataa cgattgggtt cttcggatct tgtttttcaa ccaagcgttt
     9781 ttccaatttt tccttagcgg aacgccactc gtcggtaact gctgcgtagc gctcgtcgtc
     9841 ggtaatcata ccacgacgga attgtttctt gatttgttct acacgttcgt gagattcttc
     9901 aatgatttca gccttgttgt cgataactgg gatatcggca atacccactg tcaaaccagc
     9961 aagtgttgag tgatagtaac ccaagtcttt caaacggtca aggagggctg atgtttcagt
    10021 tgtacggaaa cgcttgaaga tttcagcgat gatgttaccg agatttttct tcttgaatgg
    10081 tgggttgatt ggcaattctg caatagcagc cttgatatcc gaacctggct ccaagaagta
    10141 tttgtcagga gttccctctg tcaagttggc attgtttggc tcttgcaggt aaggaaggcc
    10201 ttctggcata atcgcgttga acaagatttt tccgacagtt gtcatcataa tcttgtgttt
    10261 ttgattgtct ttccaaggct tatcgaggct atctgttgca ataccaacac gagtatgcaa
    10321 gtgaacatag ccattgcggt aagccataac agcctcatcc gcatccttga agaccatacc
    10381 ttcaccttcg cgaccagcat cttccatggt caagtagtag ttacccaaaa ccatatcctg
    10441 agacggtgtt acgactggct taccatcttt agggttaagg atgtgttctg cggcaagcat
    10501 aagaatacga gcttctgcct gagcttcttc tgacaatgga acgtgaatcg ccatctggtc
    10561 accgtcaaag tcggcgttgt aggcttcaca gacaagcggg tgcaaacgaa gggctttacc
    10621 gtcgatcaga actggctcaa aagcctggat acccaaacgg tgaagggtag gagcgcggtt
    10681 caaaagaact gggtgttctt tgatcacttc ttccaagata tcccaaatac gatcatcacc
    10741 acgctcaatc aaacgtttcg cggcttttac gttaccagca atatcacggg caacgatttc
    10801 acgcatgaca aacggtttga agagctcgat agccatttcg cgtggcacac cacattgata
    10861 cattttaagc gttggaccaa cggcgataac ggaacgtcct gagaagtcaa cacgcttacc
    10921 aagcaagttt tgacggaaac gtccttgctt acctttaagc atgtggctga gtgatttaag
    10981 tggacggcta cctggtcctg taattggacg accacggcga ccgttgtcaa tcaaagcatc
    11041 cacagcttct tggagcatcc gtttttcgtt ttgtacgatg atacctggag cgttcagttc
    11101 caagagacga gccaaacggt tgttacggtt gataacacgg cggtagagtt cgttcaagtc
    11161 agatgcggca aaacggccac catccaactg aaccatcgga cgcaaatctg gtggaataac
    11221 tggaaggatg ttgagaatca tccactcagg cttgttacca gatttataga aggcatccaa
    11281 tacatccaag cgacgaactg ctttaatgcg tttttgacca gaagctgttt tcaattcttc
    11341 tttcaaagct gcgatttctt ttggaagatc gacttgtttc aagaggtctt ggatcgcttc
    11401 tgcacccatt ttggcaacaa atgaaccata accatattca cgcaaacgct cacgatattc
    11461 acgctctgtc atgatagact tgtgctcaag cggtgtatct tttggatcga tgaccacata
    11521 agctgcgaag tagataactt cctcaagcgc acgtgggctc atatccaagg tcaagcccat
    11581 acgacttgga atccctttga aataccaaat atgtgaaatt ggtgctttca actcaatgtg
    11641 tcccatacgt tcacgacgga cttttgcacg agtcacttcc acaccacagc ggtcacaagt
    11701 aatcccttta taacggatac gcttgtattt accacatgaa cactcccagt cttttgttgg
    11761 accaaagatg acttcgtcaa agagtccatc acgttctggt ttaagtgtac gatagttgat
    11821 tgtttcaggt tttttaacct caccgtaaga ccatgaacga accttacttg gtgaagctaa
    11881 cgtgatttgc atacttttaa atcgatttac gtcaaccact aataatccct ttcttttctt
    11941 gtgagaggtt ggttttccag acctcaaatt cttgaacaat aatcagcaga atggatagct
    12001 gataagctat ttttctataa atcagacggt ggaagaccgc tggcccttat ctctttcagt
    12061 tctgaggttt ggaccaactt gttccatcca ttctaattat tctttacctt ctgcttcttc
    12121 tgctgcaaag gctgcggctg catcagctgc ggcttttgca cgtgcttttt caagatcatc
    12181 tacgtggatg atgtcatcat cttcaccttc atcaaggtca cgcaattcta cttcattgtt
    12241 gtcttcatca aggacacgca tatccaaacc aagtgattgc aattctttga caagaacgcg
    12301 gaatgattct ggaacacctg gttttggaat tggtttacct ttggtgatgg cttcataggc
    12361 tttcagacgg cctgtcacat catctgactt gtaagtcaag atttcttgaa ggacgttaga
    12421 agcaccgtag gcttcaaggg cccaaacctc catctcaccg aaacgctgac caccaaactg
    12481 agccttacct ccgagtggct gttgggtaac gagtgagtat ggtccgactg agcgggcgtg
    12541 aagtttatca tcaaccatgt ggtgaagctt gatcatgtac atgacaccga cagatacacg
    12601 gttgtcaaat ggctcacctg tacgtccatc gtaaagaatg gttttggcat ctgaatccat
    12661 acctgcttct ttaacagttg accagaggtc ttctgaactt gcaccatcga aaactggtgt
    12721 tgcgatatgg atacccaagt tgcgagccgc catacccaag tgaagttcca taacctgacc
    12781 gatgttcata cgcgatggca ccccgagtgg gttcaacatg atgtcaactg gtgttccgtc
    12841 tggaagatat ggcatatcct caacaggtac aatacgtgaa acgacaccct tgttaccgtg
    12901 acgaccggcc atcttatctc cgaccttgat cttacgtttt tgagcgatgt aaacacgaac
    12961 caacatgtta acacctgatt gcaattcatc accgttggca cgagtaaaga ttttcacatc
    13021 acgaacgaca ccatcggcac cgtgaggtac acgaagagag gtatcacgta cttcacgtga
    13081 cttgtcaccg aagattgcgt gcaagagacg ctcttcagca gaaagatctt tttcaccttt
    13141 tggtgtgact ttaccaacaa gaatgtcgcc ctctttaact tcggcaccaa tacggataat
    13201 ccccatttcg tccaagttgc gaagagcatc ttcaccaacg tttggaattt cgcgggtgat
    13261 ttcttcaggg cctaacttgg tatcgcgtgt ttctgattcg tattcttcca agtgaacaga
    13321 tgtatagaca tcgtccttca caaggcgttc agacatgata accgcatcct cgaagttgta
    13381 accttcccaa gtcatgtagg caacgatagg gttttgacca agagccattt ccccattttc
    13441 catagaaggt ccatctgcga tgaagtcgcc tttttctacg atgtcgccca attttacaag
    13501 ggtacgttgg ttgtaggcag tacccgagtt tgaacgacgg aatttagaaa tgtggtagac
    13561 atcaagcgat ccatcttcac gacgcacttc taccttgtcc gcatctgcgt aaacaacctt
    13621 accatcgtgt tgagcgataa ttgccgcacc tgagtcatgg gcagcctggt attccatacc
    13681 agtaccaacg taaggcgctt ttggatcaat caatgggaca gcctgacgtt gcatgttggc
    13741 acccatgagg gcacggttgg agtcatcgtt ttccaagaat ggaatacacg ctgtcgcaac
    13801 ggcaactacc tgtttaggag acacgtccat gaagtctgct gaatcagcag caaattcttg
    13861 gttgttacct tggtgacggc ccataacgat tttatcaacg aaacggttat tttcatcgag
    13921 tggcgatgta gattgagcca cgatgtaagc atcttcttca tcggcagtca accaaacaat
    13981 ttcatttgta actgtaccag ttgcacggtc aatcttacgg tatggtgttt gaatgaaacc
    14041 atacttgtta aggtgaccat aagaagacaa gttgttgatc aaaccgatgt taggtccttc
    14101 aggcgtttca atcggacaca tacgaccata gtgagtataa tgaacgtctc gaacctcata
    14161 accagcacgg tcacgagtca aaccaccagg tcccaaggct gacaaacggc gtttgtgaga
    14221 caactcagaa agcgggttgt gttggtccat gaactgtgac aactgagatg aaccaaagaa
    14281 ttctttgatt gcggctgtaa caggacggat attgatgatt tgttgtggcg tcaatacttc
    14341 attgtcttga accgacatac gctcacgcaa gttacgttcc atacgagtca aaccgatacg
    14401 tacttggttg gcaagcaatt caccaacggc acgaatacga cggttaccca agtggtcgat
    14461 atcgtcaacg cgaccaagtc cttcagccaa gttgaggaag tagctcatct cagccaagat
    14521 atctgctggt gtaacaatac gcacattttc agccggatta gcattaccaa tcactgtaac
    14581 aacacgttct ggatccttag gagctacaat cttgaatttc tgcaaaagaa ctggctcaag
    14641 aagaacagcg ttgtcatttg gaatatattc taccaaattg agctcatcga attgtgcttc
    14701 tactttttca agcacatcac gactcaatac agtaccagct tccaagacaa tttcgcctgt
    14761 ttcaccgtta atcacatgct ctgcaagcgt ttggttgagc aagcgagtac gaaggttgag
    14821 ctttttatta atcttgtaac gaccaacagg tgccaaatcg taacgacgtg agtcaaagaa
    14881 acgagctgtc aaaaggctac gagaactttc agctgtcttt ggttcacctg gacgaaggcg
    14941 ctcatagatt tccttaagcg cttcatccgt acgagaatct gctgggtttt tatgaatatc
    15001 tttttcaatg gtattgcgaa ccaattcgct atcaccgaag atgtcaaaga tttcatcatc
    15061 gcctgagaaa ccaagcgcac gaacaagcgt tgtgaacgga atcttacgcg tacggtcaat
    15121 acgagtgtag gcaatgtctt ttgaatctgt ttccaattcc aaccaagctc cacggttagg
    15181 gataaccgtt gaaccataac ctactttacc gttcttatct actttatcat tgaagtagac
    15241 acctggtgaa cgaaccaact gagaaacgat gatacgctct gcaccgttga tgatgaaggt
    15301 acccatttca gtcatgattg gaaactcacc gaagaaaact tcctgagttt taatctcacc
    15361 agtttcctta ttcacaagac ggaaagtcac atagattgga gctgagtagt tcgcatcatg
    15421 cgcacgcgcc tcttccaatg tgtatttagg ctctttcaat tcataaccaa cgaattccaa
    15481 ttccatggta tccgtaaagt ttgaaactgg aagtacatct tcaaagactt ctttcaaacc
    15541 ataatctaaa aagtcttgaa aagagtccgt ttggatttca atcaaatttg gtaaatcaag
    15601 aacttccttg attcttgaaa aactacgacg ggtacggtgc ttgccgtact gaacttcatg
    15661 tcctgccaaa agttttctcc tttgtattaa gatacgagac cgtaaaaacc aaggtgaaaa
    15721 tagaagagta acgccgtgtc accagacaca aggagctcta tctttttcac acaggtttta
    15781 ggtcgagttc aattaaagat acgaggacgt aaaattcgag agaaaaatag gaaatcgacg
    15841 tagtgccatc agacactagg agatttatct tttttccgac gaatttagtc cgagttcaat
    15901 taaaagatac gagaccgtga aaaccaaagt gaaaataagc ggtaagtcca aaatctttga
    15961 ttttgtagac gcaccctcgt cagaacgact aggactttct tgacaaatcg tcgaagaaag
    16021 gccagacgtt tacgacgttg ggagtaacaa accaaagtaa atatttcata cactttttca
    16081 cacaggtttt aggtcgagtt caattaaaga tacgaggacg taaaattcga gagaaaaata
    16141 ggaaatcaac gaagtgtcat cagacactag gagatttatc ttttttccga cgaatttagt
    16201 ccgagttcaa ttaaagatac taagccgtaa acaactcaaa gaaaaatagg aaacacgacg
    16261 acggaggcaa gcctcctagg agctgtttat cttttttcac agagttgtag gcgagttcaa
    16321 ttaaaagata cgagggcgtt ttacactcca aaagaaaata agcggtaagt ccgaaatctt
    16381 tgatttcgtt gacgcaccct cgtcagaacg actaggactt tcttgacaaa tcgtcgaaga
    16441 aaggccagac gtttacgacg ccaaggggta aacaaagtca aagttccaca aactgtatct
    16501 ttttctacag gagtgtagcc cgagttcaat tatatacagc catgtgatga ccaaaattta
    16561 tcctttttct gaatttttag aatctttaag aataggtaac aattctcaaa aaaattcctc
    16621 atagacacaa aaagagcagc taaatcttcc tttgaaaaag tttgatttaa ctgctgcaag
    16681 ccttgtttgg acaatatttc aaacaagaca cacgacaaat aatttatact attatagcac
    16741 aagtactagg aaaaatcaag gtgaatcatt attcgcttgc tcactagttg ctgtttgcgt
    16801 ttctgatgac tggttcgtgt tattagctga agaactcgtt ctactccgag tcgaactgct
    16861 tcgttgggtt gagctacttg atgttggcgt ttgggaaccg ataattgtat tccaagcctg
    16921 tgctcggtca ctatctgtcc ccccaaccat gaagttataa cttgttactg gtgcaccatt
    16981 tttagcccaa taactagttg tcatcgcacc accaactgtt acttggcgcc catttacctg
    17041 tgtcgtccct gcacgttgac ccgtagaaac aacgacacta gaagcaataa cactactgtc
    17101 taattcaaat tttcctgcga acatatccgc attaacattg taaagcgcat caaccatatg
    17161 ggccacatat tgtgaattat tatggtagcc tgtccagaca tacatttctg agttatcatc
    17221 attcccagcc caggtaccta aagttactct aggggttgat agcatgagcc acacgtcatt
    17281 gacttcatta cttgttcccg tcttaccgac gaaatcagat gatgctgcct gtgggtttaa
    17341 accactcaat cgactcttga acgtcgtagt ataaccagag ttgacaacct gtctcaaaag
    17401 ctggttcata atacttgcgg ttgctttaga atagacctga accggagcca cttcatgctg
    17461 atacactact gttccatcag aggcggtaat actctcaacg atgtaatgtt tgttataaac
    17521 gccaccattt gccaaagttt gatatgcatt ggtatttgtc aatactgaaa tttcaacacc
    17581 accgcccaac ggtacacttt caatatcgta cataggaata tgataattca ttttatccat
    17641 gtacgctttg gcatctacac ctgcatttct catcatctta taggtccaaa aagcaggaat
    17701 gttaacagaa cggtcaatag ccgtctgtaa gttcatcata ccagtaccac gtcctgaacc
    17761 atacataatc ggttgtccac ttgaaaagtt cgttggataa tcggaaagga tgctggcaga
    17821 acctatcaaa ccttgatcaa tcgcaatacc gtaagctaac agaggcttga tggttgacgc
    17881 tggcgaacga agggtatcaa aggcatgatt attttggttg gttgcatagt cgcgaccacc
    17941 tacaaatcct aaaatggctc ctgtggcatt atcaattaag acactacctg tctcgacata
    18001 ttcgtttcca tcatccaaaa cagagccata atttgccaca acagactgca ttgccgcata
    18061 gattccttga tcaacggtac tcttaatcgt atagccgcct tgactcaatt cttgcttagc
    18121 caattcttca taggaagcct tagtttcatc gtttttcaag tcattttcag aaaccttatc
    18181 gcgttttacc agataatcaa acataacctc ttgcgcttct tccatgacct cgtagtagag
    18241 ataatctttc gtatccgcca ttacaggagc tggagcaata aaatcttgtt taatatcgta
    18301 agctttgtag gtttcgtatt cttccttggt caagaatgac gcccgataca tattaaagag
    18361 aacatcttga tagcgttcaa taccgtaaac catatcttca tctgatttac gtgttccatc
    18421 tgatgcatag ggagaataaa caatcggact ttgcggcaag cctgcaataa aagcagcctg
    18481 cggaacagtc aaatctttcg ctggtttacc gaaaattccc tgagccgcag cttctacccc
    18541 tgcaatattt cgtccctgat tatttcgacc aaatggagaa acatttaagt aaatggtcaa
    18601 aatctcttcc ttggtcatat tccgctctaa tgccaaagcc gaaacaatct cattagcctt
    18661 acgcgtaaag gttggagcat ctccgacaag ttgctgtttt atcaattgct gcgtcaaggt
    18721 tgaacctccg ctagatgaac ctagaccaac tgatcccaat gccgcacgca aaacagcctt
    18781 aggcacaacc ccattgtggg tttcaaatgt ttcatcctct gtcgcaatta cagcctgttt
    18841 taggtaattc gagacctctt ccgaagtaat aggtacacga agcagatctg aattaacttc
    18901 cgacaccaag ctaccatccg aataggtaac ggtggaaatc cgactaactt ctgaaacctt
    18961 cgctaccagt tcctctgttt tgggaatctt aacgtcatcg aaaagactaa ccacgaaacc
    19021 aattcctata cccgcaccaa aaagaccgaa taggaacacc aagacagcta ctgaattgaa
    19081 taataatttc agcgtccgaa ggaaaactcc tactacatcc cctaggccta gggcactgat
    19141 tttcttttta aaatcttgct tatctgattt agtcgccata ttaactcctt atcgttccat
    19201 tataccaaat tttgtttatt ttccgcaatt tcgtggtata atagggagga attttttaaa
    19261 atgaagttcg gtccaaaaat catataaaat ggtttatggt cctgtatatt aaacctaaag
    19321 gagacagccc acatgaacat ttttgaagaa ctaaaagctc gtggcttggt ctttcaaacg
    19381 acagacgaag aagccttggt aaaagcattg acagaaggac aggtttctta ttacacagga
    19441 tacgatccaa cagcagatag tttacacttg gggcacttgg ttgctatctt aaccagccgt
    19501 cgcttacagt tagctggcca caagccttac gccctagttg gcggtgcaac tggtctgatt
    19561 ggcgaccctt ccttcaagga tgcggagcgc agcttgcaaa ccaaagatac cgtggacggt
    19621 tgggtgacaa aaatccaagg tcagctctct cgcttcttgg attttgaaaa tggtgacaac
    19681 aaggccgaaa tggtcaacaa ctacgactgg ttctcagaca tcagttttat cgacttcctt
    19741 cgtgatgttg gtaaatacta cacggtcaac tatatgatga gcaaggactc tgtgaaaaaa
    19801 cggattgaaa cagggatttc ctacaccgag tttgcctacc aaatcatgca gggctatgac
    19861 ttctacgagc ttaatgacaa gcacaatgtg accctacaaa tcggtggttc tgaccagtgg
    19921 ggcaacatga cagcaggtac tgaattgctt cgccgcaagg ctgacaagtc tggtcacgtg
    19981 atgactgttc ccctcatcac tgactcaaca ggtaagaagt tcggtaagtc agagggcaac
    20041 gctgtttggt tggatgccga caagacttct ccatatgaaa tgtaccaatt ctggctcaat
    20101 gtcatggacg atgatgctgt tcgtttcttg aaaatcttta ctttcttgtc attagatgag
    20161 attgctgaaa tcgagaaaca atttgacgct gcccgtcatg aacgcttggc tcagaagatt
    20221 ttggctaggg aagtcgtgac attggttcac ggtgaagagg cttataagca agcccttaac
    20281 atcaccgaac aattgttcgc tggcaatatc aaaaacctgt ccgcaaaaga gctcaagcag
    20341 ggcctcagca acgtgccaaa ctacgctgta caggctgaag ataaccttaa catcgttgaa
    20401 cttctagtca cctctggtat tgtcaactca aaacgccaag ctcgtgagga tgtagcaaat
    20461 ggtgccatct atgtcaacgg tgagcgtgtg caggacttgg actataccct ttctgacagt
    20521 gacaagattg acggcgagct gaccgttatc cgtcgtggta agaagaagta ttctgttttg
    20581 acttattaag cgatgaaaaa taccaagcaa aatcctaaaa atcaagaatt tttgaacgac
    20641 tactttgaac aaatagctca ggaagccagt cttttgcatc ctgagttaga gcatttgtct
    20701 gccgatgaac atcaagcatt tttggaccaa ctctatcgtg aggatgagac acgtcgtgcc
    20761 aaacgcctga aggaacatct agaggtgttc tccgacgcag tgattggggt tatcatcacc
    20821 atgatgttgc tggaaattcc tttaccgagc gacactgttg atacacatca ctttttcact
    20881 ggcatcctca tcttctttgt atcctttttc atcgtggcgg atttttggta tgacaaccac
    20941 aagattctgg ggcagattga gcatgcaacc agcaaaatct tgattgttca attcaacttt
    21001 atggcaacgc tggcccttat ccccctcttt actcggtgga tgatggaagg cataaccacc
    21061 acggctgttg ttggttatgg ggtcgtgacc attgcagtca atctctgtca atccattttg
    21121 aattactttg tcctacaaga aaagtttgcc ggaacaacat atacaaagcg ttttgtttcc
    21181 atggcacact tacggcaatt ggtgaccgtc gcccttttca acatcgtcgt tatcctattt
    21241 gcttacttta atccgacact tgccttttat ttctacattt tacggccaat cgtatctttc
    21301 ctaggagcag ccttcttcga aaagaaacgg caggagcgga aagaaaaaat ggcagttaga
    21361 gtaaatcaca tataattccc aaggaaatcc tatgtgattt ccttttctgc taacctagga
    21421 gaaaagacat gacctgcatt ttttgccacc aactcaaaga agaagatatt ctctaccaga
    21481 cagaacattt caaggtcgtc tgggatattg accccgtcca aacggggcat ctactgatta
    21541 tcagcaagga acactatgac acgctcagcc aaatcccttc tgctgttcgc tatgagctat
    21601 cggacttgga agtctttttg actgataaac tctgtcaagc attgataatt gacggtgtga
    21661 ccatagccag caacgaccgc ttgtttgacg ctggtaccca tttccatgtc cacctgattc
    21721 cacgctttcg atcagacggc ttctgggacc agatttcgct tgcacaagtg caactagacc
    21781 tgaacgcctt tctcaaagca ttataaaaag cagcccgacg gctgctttta cgcttatatc
    21841 aagtcttcca cttcatagat agtatcatcc agctcctctt ggtaccgttc caagtcatag
    21901 gctacagagg tttccacctc cgccaactgc tcttccagct ggattttcac ctcttccacc
    21961 ccattcaagt ccaagaggtg attggtcaca tgcttgacac agttttggca cgataagttt
    22021 ttcaatttca aagtttgctt catgttcttt ctccgttttt atactcaatg aaaatcaggt
    22081 tcagactagc tccaaaggtt cggggaacct ttggaggttg gaaattgggc gagcctgttc
    22141 gctacaaaaa ggttcgggga acctttgaag gttggaaata gagcgaacgt cttcgtttct
    22201 ccaagagcag atagaaccct actactttcg cattttcagg tagtcggctg aggctgggca
    22261 gaaagcccag cacctcttct cagagttcgt atcaacatct cagcgcagtg gttgattggc
    22321 agatttgttc gttttttaca ctccaaatct ggcctaatca actgtgcggg gggtgggaag
    22381 acgaactctt tttagactgg tcgagttctt tcccactccc actcatcaag tcaacaacgt
    22441 ctgaggttga ttttcgaaga gtatgatgat gcccacaggt acattgcccc gccaagcacc
    22501 gacaagcgat ttgctcgggt gcagtccttt gtaactgcga gattttgctg gccagatttt
    22561 ctaggctttt tggggaaaat gtccctgtgt ctagcagttt gtcaaccaat tgcccctgtt
    22621 ttgtggaaca gatggtagct agtaagagct ccacctgacc ctgcaaatgt tcctcttcac
    22681 tgatcagcgg ataatagtgg tatttgctgg tttccttgac cattctcaaa tagtttttct
    22741 tccgcagacg ccccaagagt gtcttaatgg tcgtcgcctg ccaatcaaag ccttcctgca
    22801 aggcctgaat aatttcctga gaagtcgcac caggatgggc ccacaggact cgcatgacct
    22861 gccactccgc agcagaaatt gtctgctcca cacattcacc tcccaacaat aattttctaa
    22921 ctttagttta catttgtagt caaaaattgt caagaagaaa gactgaacac cttgcccagt
    22981 cttctcatta ttcttagtga gccagcatct cctgaccaat ttccaaacca gtcaaaccaa
    23041 caggatagta tgtcggccag ttttccaact cttccaagag tttttcttgg ctctctccac
    23101 caaaatagat atggaagtga cctgttttaa caggggcgat attgtggtcg ctaaattgaa
    23161 catacttata gttaccagca tttgcatccg ttgcttcaaa caagaaacga actccacgat
    23221 ttcctttttt gtaggtcaaa atcttatagc ccacatactt atacgtgaat ttttctttct
    23281 tatctcccac tacaaattcc atggtattat ctgtaatgtt aatttgatca acatctgttt
    23341 tgtagcctgt atcgtaataa gccttgtact cttctgctgt cataccacct ttgatcttag
    23401 ccttgtaatc ccagacctga tctagcgtcc catcaagcaa gtatggataa acagattgcc
    23461 actcacctgc ataatctgaa agggtacgat cttttacggc actatcttca aaataaccgt
    23521 tataaacagt ttgcgcagtc tcagcacctt cttctggcaa aatttcagaa ccttcttggg
    23581 aagttgtttt ttcaagggca gtcagattat cttccataac agaaatataa tccttaccat
    23641 ttttcatatc ctcatccgtc aaactttcaa gaggattaag aacgtccaac tgaaccccag
    23701 tctctttggc aagtgtttct gcaacagatt ttgacgcatt ttcttcaaaa tagatatact
    23761 taataccata tttattaata tactctgtca attctgctag acgtgatgga gttggatctt
    23821 catctgcagc aacacctgta atagaaactt gtttcaaacc atagtccaaa gccaaatatg
    23881 caaatgcagt atgttgtgta acaaagtatt tctgtttcgc agcagataat gtttcagaat
    23941 atttagcatc caaagcatct aatttctcaa tataggctgc cgcatttgtt tcaaaagcat
    24001 ctttcttttc tgggtattta gctaccaaac tatcacgaat attttctaca agtgtgatgg
    24061 cacgctcagg agacaaccat acatgcggat cataagcatg gctatgcccc tcctcactat
    24121 ggtcgtgacc ttcatgttcc tcctcaccgc caggcaaaag caacatcccc tccgtcgcac
    24181 taatcacatt aacctttgtt gtatcaagtg atttttcaac atcatgaacc catgtttcca
    24241 tattctcatt ttcaaaaaca aaagcatctg cctcttggat acgagcaata tctttagctg
    24301 acggctcata accatgaacc tctgtccctg ccttaaccaa cagatcaaca tttgcctcat
    24361 cacctgccac ctgcttggtg aactcataaa caggataaaa ggtggttaca atattcaact
    24421 tgccatcttc agaagctgtg ctattgccac aagcccctaa aagcaaagct gagacagaca
    24481 agaataataa accaactttt ttcatcttaa ctccttattt tttaaatttt tgaacaacat
    24541 tcaccagtaa gaaaatacta atgaaaatca aggtaatact tgcactcgct ggggtttctg
    24601 catagtaaga ggtcagcaac cccatgacca ttccaaaaaa gccaatgccc atcccagtaa
    24661 agataacagc tttaaaactc ttaccaagtc gcaatgcaat agaagcaggc aaaaccataa
    24721 ttgttgaaac cagcaaagca cctgccgcag gaatcattaa ggcaatggca acaccagtca
    24781 ccacattgaa ggcaatggac ataactcgca caggtaaccc atctacaaat gccgtatcct
    24841 cgtcaaaggt aagaatatac atcggacgta aaaacagcaa tgtcagcacg atgacaatca
    24901 cagcaatcgt aaacaaagca attacctgct cctgactaat ggtcactatc gaaccgaaca
    24961 gatattgttc caagctaagc cctgatttcc caccagattt attcatgaca atgagcgaaa
    25021 tagccaatcc agttgacatg aggatagccg tcccaatttc cataaaattc ttgtaaattg
    25081 tccgcaaata ctctaaaaat acagctgcca caataacgac aagaacagtc gaaagcgttg
    25141 gtgaaatccc caataccaaa ccaaatgcaa cccccgccaa cgaaacatga ctaagagtat
    25201 ccgacattaa gctttgacgc ctaaggatta agaaaacccc taggatcggt gaaaagaaac
    25261 tcatggcaat aatcgccaga aaagcacgct gcataaagtc ataatgaaat acagatagat
    25321 caaacatggg caacctcctc atccgcttca tgaacattga aacaacgcca aggagactgc
    25381 tgatcacgaa ccaagtggat gtttcgatcc gcatacttat tcagctcatc aggatcatga
    25441 gttatcatta aaaccgactt tccatgcttc ttagctgaat ggtgcatgag ctggtaaaaa
    25501 gcatccttgg tccctgcatc catccctgtt gtcggttcat ccagaataaa aatatctgga
    25561 tcagaggcaa acatacgcgc aatgaccgca cgctgcttct gcccaccact caaagcacct
    25621 aagcgcttat cccgatgttc ccacatgcca actgattcca aactaatccg aacatgttcc
    25681 tcatcatggg ctgtcaaacg acgaaaccaa ccttgtcgag gataacgccc tgattttacg
    25741 aattcgtaaa ccgtgctcgg aaaaccagca ttaaaacttg caatttgctg aggtaaatag
    25801 gccattctca acttcttacc ctttatactc ttctcagcaa tagaaacctt cccttgtttg
    25861 ggcttcaata tccccaaagt cgctttaatg agggttgtct tggctgcacc attctcacca
    25921 gtcaaagtta caaattcccc actatcaaga taataatgaa tatgttctaa aaccggttct
    25981 ttgtcgtagt aaaacgacaa gtcttccaca gtaatatatc tcatctattt tctaatcttc
    26041 tccactaact cacttaagaa tcgagcaatt gactcctgct cttcaagact ataatgttcc
    26101 aaaagctctt cataagcttc caaagtatgc gcgtgatgat gagcatgctc tgcagcaata
    26161 ggcttagcag cctcagtcaa actaaagcga acaatacgag catccttatc atctctaacc
    26221 gccaccaata acccctgagc aactaatgac tttgtagcct tcgtgatcgc agcctgacta
    26281 acattcaact ccttagcaat ctcagtatta gtatacgcag ccttttcaat aagcatcaaa
    26341 atatgctcct gcgtattcgt caacttcacc gtgctttgac aagaaccaac caaaatctcc
    26401 aattgattct ccgaactcaa aacaatctcg tgcagatact tctcaatttc taatgcaata
    26461 cgattcatag gcatcccctt aaccttttaa ttaacttgtt aagtatacca catagaaaac
    26521 aaaaaaacaa ggaaaattta ctgaaaa
//
LOCUS       DASGAC010000012        23030 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.012, whole genome shotgun sequence.
ACCESSION   DASGAC010000012 DASGAC010000000
VERSION     DASGAC010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 23030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23030
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.012"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(141..1154)
                     /locus_tag="U1335_000399"
                     /pseudo
     CDS             complement(141..1154)
                     /locus_tag="U1335_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935801.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
     gene            complement(1484..2332)
                     /locus_tag="U1335_000400"
     CDS             complement(1484..2332)
                     /locus_tag="U1335_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase"
                     /protein_id="HEM5230910.1"
                     /translation="MTVIDGKALGVKLQAALAEKTARLKEEKGLVPGLVVILVGENPA
                     SQVYVRNKERSALAAGFKSEVVRVPDTISESDLLDLIERYNQDDEWHGILVQLPLPSH
                     ISEEKVLLAIDPDKDVDGFHPANMGKFWSGHPVMIPSTPAGIMEMFKEYQIELEGKSA
                     LVIGRSNIVGKPMAQLLLDANATVTIAHSRTKNLPELARQADILVVAIGRGHFVTKEF
                     VKPGAVVIDVGMNRDENGKLIGDVKYDEVSEVASHITPVPGGVGPMTITMLMEQTYEA
                     CVRSGK"
     gene            complement(2566..3300)
                     /locus_tag="U1335_000401"
     CDS             complement(2566..3300)
                     /locus_tag="U1335_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019805208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5230911.1"
                     /translation="MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGK
                     STFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMREKMGMVFQQFNLFPNMTVLDNI
                     TLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
                     VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVI
                     VEDGTPEEVFEHTKEERTKDFLSKVL"
     gene            complement(3293..3982)
                     /locus_tag="U1335_000402"
     CDS             complement(3293..3982)
                     /locus_tag="U1335_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5230912.1"
                     /translation="MNFSFLPEYWAYFNYGAIVTLIIAFFSVFFGSILGVLLAFAQRS
                     KYKVLAWTANIYVWIFRGTPMIVQIMIAFAMTHFVAPTFQLGILTVDLTRLIPGIIVI
                     SMNSGAYVSETVRAGINAVPKGQLEAAYSLGIRPKQAMRYVIMPQAIKNILPALGNEF
                     VTIVKDSSLLSTIGVMELWNGAQTVQSTSYIPLTPLVFAASYYLIMTTVLTVIIQSFE
                     KKLNKGGQFHV"
     gene            complement(4108..4338)
                     /locus_tag="U1335_000403"
     CDS             complement(4108..4338)
                     /locus_tag="U1335_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005592360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1797 family protein"
                     /protein_id="HEM5230913.1"
                     /translation="MESHLVRIINRLEAMANDGGTLKRNFERDGIVVAEVAYSYDEEN
                     GSVFTLRDVAARETYAFDSIDLIAMEIYELLY"
     gene            4562..6790
                     /locus_tag="U1335_000404"
     CDS             4562..6790
                     /locus_tag="U1335_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEM5230914.1"
                     /translation="MLCKNCNINDATIHLYTNLNGKQQQVDLCHNCYQIMKTDPNNAI
                     LRGLGDLTNPNNMDPFSEFFNHLGGYPGNTPAGKNREQTPPTQAGGHNGRGGQTPPPQ
                     QPQQPNGLLEEFGINVTEIARRGDIDPVIGRDQEITRVIEILNRRTKNNPVLIGEPGV
                     GKTAVVEGLAQKIVDGDVPQKLRDKEVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRN
                     RREIILFIDEIHEIVGAGSAGDGNMDAGNILKPALARGEMQLVGATTLNEYRIIEKDA
                     ALERRMQPVKVEEPSVEETITILKGIQNKYQDYHHVKYSDAAIEAAAVLSNRYIQDRF
                     LPDKAIDLLDEAGSKMNLTLNFIDPKEIDQRLIDAENRKAQATRDEDYEKAAYFRDQI
                     AKYKEMQKATISEEDIPLITEKEIEAIVEQKTNIPVGDLKEKEQSQLVNLASDLKAHV
                     IGQDEAVDKIAKAIRRNRVGLGAPNRPIGSFLFVGPTGVGKTELSKQLAIELFGSADS
                     MIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEKVRRNPYSLILLDEVEKAHPDV
                     MHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKVEASVGFGAAMEGRTQSVLG
                     QLSNFFTPEFMNRFDGIIEFQPLSKENLLEIVSLMLDDVNKRLSHNGISLHVTDKVKE
                     KLVDLGYDPKMGARPLRRTIQDQIEDAITDFYLEHPAEKDLRAVMSSKGTIQIKAQTK
                     TK"
     gene            6976..7437
                     /locus_tag="U1335_000405"
     CDS             6976..7437
                     /locus_tag="U1335_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM5230915.1"
                     /translation="MEKIAVFGEKKAGVSYQSRFGVYAVIPDEKKEQIILVQAPNGAW
                     FLPGGEIEKGENHLIALERELMEELGFTAEIGKYFGQADEYFYSSHRDTHFYNPAYIY
                     EVTSYHQIGQPLEDFNHIAWFPVNEAIDKLKRGSHKWGIEQWKLQENSFNN"
     gene            7492..7800
                     /locus_tag="U1335_000406"
     CDS             7492..7800
                     /locus_tag="U1335_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1827 family protein"
                     /protein_id="HEM5230916.1"
                     /translation="MKIINTTNSHPNLVQSQLANTDAFLVETYSAGNTDVIFTQAPRH
                     YELLISNKYRAVQQNEIEQIRDFFLHRKIDERTINKAAIQTIHTDRLIEMSIPIIAEV
                     "
     gene            complement(7973..10762)
                     /locus_tag="U1335_000407"
     CDS             complement(7973..10762)
                     /locus_tag="U1335_000407"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEM5230917.1"
                     /translation="MKLKETLNLGKTAFPMRAGLPTREPEWQKAWDEANLYARRQELN
                     AGKPAFHLHDGPPYANGNIHVGHALNKISKDIIVRSKSMSGFRAPFVPGWDTHGLPIE
                     QVLAKQGVKRKEMDLVEYLEMCRDYALSQVDKQRDDFKRLGVSADWENPYITLTKDYE
                     AAQIRVFGAMADKGYIYRGAKPVYWSWSSESALAEAEIEYHDIDSTSLYYANKVKDGK
                     GLLDTDSYIVVWTTTPFTVTASRGLTMGADIDYVLVQPAGSDRKYVLAEALVDSLAAK
                     FGWESFEVISKHKGAEFEYIVTEHPWDREVDELVILGEHVTTDSGTGIVHTAPGFGED
                     DYNVGVKYDLEVAVTVNERGLMNEAAGPDFEGQFYDKVVPTVKEKLGDLLLASEVINH
                     SYPFDWRTKKPIIWRAVPQWFASVSKFRQEILDQIEATTFNPSWGKTRLYNMIRDRGD
                     WVISRQRAWGVPLPIFYAEDGTAIMTKEVTDHVATLFEEHGSIIWWKSDAKDLLPAGF
                     THPGSPNGEFTKETDIMDVWFDSGSSWNGVMNARENLAYPADLYLEGSDQYRGWFNSS
                     LITSVAVNGHAPYKAVLSQGFVLDGKGMKMSKSLGNTILPSDVEKQFGAEILRLWVTS
                     VDTSNDVRVSMDILGQVSETYRKIRNTLRFLIANTSDFNPASDAVAYEELRSVDQYLL
                     VKFNKLVAQIRQAYDNYDFMDIYKSVVNFVTLDLSAFYLDFAKDVVYIDGAKSLSRRQ
                     MQTVFYDILVKITKLLTPILPHTAEEIWSYLEHEAEEFVQLAEMPEVETFANEAQLLA
                     DWESFMVFRTQAQKALEEARNAKVIGKSLEAHLTAYVSAETKSFLESLNADLAQLLIV
                     SNLTVTTDAAPESAVLVDEVAFTVERAAGEVCDRCRRIDTSVVERSYGATTCDHCASV
                     VEENFPGAVAQGFEA"
     gene            complement(10773..11213)
                     /locus_tag="U1335_000408"
     CDS             complement(10773..11213)
                     /locus_tag="U1335_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5230918.1"
                     /translation="MIRLELVNKDNFDQVLDLEVAPKDQRRVASVEYSLAQAWLYRED
                     GHLLPYAVKSGQKVVGFVLLSIQEDKSYYVWRLLIDKKYQNRGHGKEVIRQILVLAKE
                     DTLCQKVTMNYVIGNHKMRYILEKLGFQFIGLEGQEMKMELSIK"
     gene            complement(11446..12135)
                     /locus_tag="U1335_000409"
     CDS             complement(11446..12135)
                     /locus_tag="U1335_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HEM5230919.1"
                     /translation="MALTALELKDKTFATKFRGYDADEVDDFLDIVTRDYEDLIRKNH
                     DQELELKNLRERLAYFDEMKESLSKSVLLAQDTAEKVKVAAEDQAANIIKQADYDAAT
                     LLHEAKDKANAILRNATDNAKKVVIETEELKNQTRIFHQRLKSTVESQLSLVNSSEWE
                     EILRPTASYIQTSDEAFRDVLHKALDEELPVEEESLDYTRQLTPEEIAELTRQAVAFE
                     SGDSVEISTEE"
     gene            complement(12144..12935)
                     /locus_tag="U1335_000410"
     CDS             complement(12144..12935)
                     /locus_tag="U1335_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEM5230920.1"
                     /translation="MKNDKNLLQHFSREEREFVEKIMDMCQQVEDTYSYRLTQFLHPR
                     QDEIVCKIANYYQLQTFSSRDFVSTEHSRVIIAPAYYELDIKDFELTALHLSYARKFH
                     TLSHSQVLGTFLNQLGIKREYLGDILIDDERLIVFIDQKFGQIALQSITKVARVPVKG
                     KEEEWTTVRLPIGQEWRSKDVLVSSMRLDKLISVAFNLSRATANKLIEAGHVKLDYVL
                     TEQTSKLVEIGQLISVRRYGRVRLNEFLGFSKQGKIKLKLDIVKT"
     gene            complement(12938..13201)
                     /locus_tag="U1335_000411"
     CDS             complement(12938..13201)
                     /locus_tag="U1335_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEM5230921.1"
                     /translation="MQILIFLLLKIVEIYSYLLLAYALLSWFPSLYTSSIGRLIQWLV
                     APILKPFRRFNLQFMGLDWTVMAAMIALNMGTRFLVQLLLLLA"
     gene            complement(13206..13769)
                     /gene="sepF"
                     /locus_tag="U1335_000412"
     CDS             complement(13206..13769)
                     /gene="sepF"
                     /locus_tag="U1335_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HEM5230922.1"
                     /translation="MALKDTFKNLFNYFEVDEVNEVEEQADAYSMPNDRPKMRVANTT
                     AAPVREQQPKVETRREARSESQLQRLHERQQELMTNNNEKEIVKTTIDIKFPKRYEDA
                     PEMVNLLLDNASILIDFQYMSEQQARRCLDYLDGARSVLSGNLKKVSNTMWLLTPVNV
                     TVNIEELRNAGTSTGVADSNFDFDIKR"
     gene            complement(13786..14457)
                     /locus_tag="U1335_000413"
     CDS             complement(13786..14457)
                     /locus_tag="U1335_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEM5230923.1"
                     /translation="MNFQKNKDAIFSAVAKAAEKADRPSESVKVIAVTKYVDSSIANQ
                     LVNAGITHIGENRVDQFLEKYNALADKQLTWHLIGTLQRRKVKDIIPFVDYFHALDSV
                     KLAQEIDKRATKIVKCFLQVNVSGEETKHGFAVSEIDAALAEISLLENIELVGLMTMA
                     PIDATDDELDEIFSKMQEIQEELATRNLPRMPFTELSMGMSGDFERAIAHGATYVRIG
                     SAFFE"
     gene            complement(14464..15693)
                     /gene="ftsZ"
                     /locus_tag="U1335_000414"
     CDS             complement(14464..15693)
                     /gene="ftsZ"
                     /locus_tag="U1335_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002263818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEM5230924.1"
                     /translation="MAFSFEAAASHGAVIKVIGVGGGGGNAINRMIEEGVAGVEFIAA
                     NTDVQALSSSKAETVIQLGPKLTRGLGAGGQPEVGRKAAEESEEALTNVLTGADMVFI
                     TAGMGGGSGTGAAPVIARIAKNLGALTVAVVTRPFGFEGNKRGNFAIEGIEGLREQVD
                     TLLIISNNNLLEIVDKKTPLLEALSEADNVLRQGVQGITDLITNPGLINLDFADVKTV
                     MENKGNALMGIGIGTGEDRVIEAARKAIYSPLLETTIDGAEDVIVNVTGGYDMTLTEA
                     EDASEIVNQAAGQGVNIWLGTSIDETMKDEIRVTVVATGVRQDTADKPARHRAEAVSP
                     RPSHRFDHSVASAPTRGVAQQTEAPKASAFGEWDLRRENLIRPTDTEPTSTVSVEKFT
                     MDQDEDELDTPPFFRNR"
     gene            complement(15719..17098)
                     /gene="ftsA"
                     /locus_tag="U1335_000415"
     CDS             complement(15719..17098)
                     /gene="ftsA"
                     /locus_tag="U1335_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEM5230925.1"
                     /translation="MARNGFFTGLDIGTSSVKVLVAEYIDNEMNVIGVSNVKSAGVKD
                     GIIVNIEVAAGAIKKAIEQAEEKSGIRIEKVNVGLPANLLQIEPTQGMIPVTTDSQEI
                     TDLDVENVVKSALTKSMTPEREVISFIPEEFTVDGFQGIKDPRGMMGIRLEMRGMLYT
                     GPRTILHNLRKTVERAGVQVENIVISPLALTRSVLNEGEREFGATVIDLGGGQTTVAV
                     MRGQELQYTNIYQEGGDYITNDISKVLTTSKSIAENLKYNYGIAYPQDASDKEKFTVD
                     VIGENAPVEVTERYLSEVIAARLRQIFDRVKQDLERTRALDLPGGIVIVGGGAILPGI
                     TELAQEVFGVNTKLFVPNQIGIRNPAFASVISFVEYVGELEDVENIAQHAVNGETTLR
                     HKPVEIPVARPRISQPIQREIVNELNTVDQVEEQVAPTYHDEEEEVRPAAKGNITDRI
                     RGLFGSMFE"
     gene            complement(17251..18333)
                     /locus_tag="U1335_000416"
     CDS             complement(17251..18333)
                     /locus_tag="U1335_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsQ-type POTRA domain-containing protein"
                     /protein_id="HEM5230926.1"
                     /translation="MTEKDSNVEESVLEVEQASQVELDSEQISPAEKESVLAEEKGLS
                     TDVDIPEMTASDDEKSAFFEQWKARHQAYLAHKDDADIQAVDEGQTEQKNPEAKKSKR
                     VFFQGINRRQESLESKKETEKKVQSLKVDIPSKVVWKAIPVLVTSLLLAALALYFISP
                     TSKKKQIEVVGNERLTAEQVENYSLISPDDYIVTIALHADAYAKNIKKNSSSVETATI
                     KFQFPATFTIQIKEYAIIGYIQQQSQWYPVLSSGVVGGEPVSQDSLPEGYTTINLSDK
                     ELIKELAIELGKIDTGIRSAIQTINLTPSKVTADLLTLNMADGNTVLVPLSEISQKLP
                     YYTKIAAEVTVPTTIDMEVGIYRYAS"
     gene            complement(18339..19403)
                     /locus_tag="U1335_000417"
     CDS             complement(18339..19403)
                     /locus_tag="U1335_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--N-acetylmuramyl-
                     (pentapeptide) pyrophosphoryl-undecaprenol
                     N-acetylglucosamine transferase"
                     /protein_id="HEM5230927.1"
                     /translation="MKKIVFTGGGTVGHVTLNLLLIPRFLEEGWEVHYIGDGNGIEHE
                     QVVKSGLDVHFHSISTGKLRRYFSFQNMLDVFKVGFGVLQSLAIIAKIRPQALFSKGG
                     FVSVPPVIAANLLRVPVFIHESDLTMGLANKIAYKFATTMYSTFEQPASLTKVKHVGA
                     VTKVGQTNDKVTPIQLPEILSHFDKSLPTLLFVGGSGGAKVFNDLISQNSAALTERFN
                     IINLTGDSSLNQLDKNLYRVDYVTELYQPLMDLADVVITRGGSNTLFELIAMQQLHLI
                     VPLGRQASRGDQIENALYAEKKGYSKQIDESQLTFASLLVEVDELLKHKEFYIQNMAN
                     SNEIQSVDSFYNLLREDMGR"
     gene            complement(19406..20755)
                     /locus_tag="U1335_000418"
     CDS             complement(19406..20755)
                     /locus_tag="U1335_000418"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000862950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEM5230928.1"
                     /translation="MKMIDIVKNKKVLVLGLAKSGESAARLLDKLGAIVTVNDGKPFE
                     ENPTAQSLLEDGIRVICGSHPLELLDEDFALMVKNPGIRYDNPMVEKAIGKGIPVWTE
                     VELAYLVSDAPIVGITGSNGKTTTTTMIAEVLNAGNKPAKLCGNIGYPASSVAQTATA
                     EDTLVMELSSFQLMGTESFRPHIAVVTNLIASHIDYHGTFEDYVVAKWMIQRQMTAED
                     FVVLNFNQKEAKELAEQTKATVVPFSTQEVVDGAYLADGKLYFKGEYIMDADQIGVPG
                     SHNVENALATIVVAKLLGVDHQAIQESLSAFGGVKHRLQFVGEINGVSFYNDSKSTNI
                     LATQKALSGFDNSKVILIAGGLDRGNEFDELVPDLVGLKKMVILGQSAPRVQRAADKA
                     EVETIEALDIADATRKAFAIAEKGDIVLLSPANASWDMYANFEVRGDVFLQTFEELK"
     gene            complement(20853..21143)
                     /locus_tag="U1335_000419"
     CDS             complement(20853..21143)
                     /locus_tag="U1335_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3165 family protein"
                     /protein_id="HEM5230929.1"
                     /translation="MFYLILAIMLVLFYIFVAPRNIKGTMNLIAAVFLLVALAIALVL
                     GFLRIMQFSKEIWVGLLMILIGFWAMRDIYYLDKEPKDRQRRTERPGPYRYR"
     gene            complement(21161..23008)
                     /gene="typA"
                     /locus_tag="U1335_000420"
     CDS             complement(21161..23008)
                     /gene="typA"
                     /locus_tag="U1335_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEM5230930.1"
                     /translation="MTKLREDIRNVAIIAHVDHGKTTLVDELLKQSQTLDERTQLDER
                     AMDSNDIEKERGITILAKNTAVAYNGTRINIMDTPGHADFGGEVERIMKMVDGVVLVV
                     DAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDKPSARPEEVVDEVLELFIELGADDDQ
                     LEFPVVYASAINGTSSLSDNPADQEETMAPIFDTIIEHIPAPVDNSDEPLQFQVSLLD
                     YNDFVGRIGIGRVFRGTVKVGDQVTLSKLDGTTKNFRVTKLFGFFGLERKEIQEAKAG
                     DLIAVSGMEDIFVGETVTPTDAVEPLPVLRIDEPTLQMTFLVNNSPFAGREGKWVTSR
                     KIEERLLAELQTDVSLRVDPTDSPDKWTVSGRGELHLSILIETMRREGYELQVSRPEV
                     IIKEIDGVKMEPFERVQIDTPEEYQGSVIQSLSERKGDMLDMVATGNGQTRLVFLVPA
                     RGLIGYSTEFLSMTRGYGIMNHTFDQYLPVVQGEIGGRHRGALVSIDQGKATTYSIMR
                     IEERGTIFVNPGTEVYEGMIIGENSRENDLTVNITTAKQMTNVRSATKDQTSVIKTPR
                     ILTLEESLEFLNDDEYMEVTPESIRLRKQILNKAERDKAAKKKKLATEE"
BASE COUNT         6708 a         5339 c         4225 g         6758 t
ORIGIN      
        1 tttgcggtgg aaacgatgtc gttaatacta tcaagtaaat gagctttaat ctgatttagc
       61 atgacttttc cccttttatt tttagtgtaa cataaaaact aacccaccac aaaatgtgat
      121 aggttagtga gcttaatgac attggctaga ggacttcctt tttgtttttt gacagcgaaa
      181 gcggcttggc ataaacattt cttcaaataa gaattaccat gtcgaatctt ggtacttcgt
      241 ttcttaccag cactctcatt attacctgga caaagtccag cccaagaagc taaatgtcca
      301 gcagtgggaa attggctcat atcaacacca acctcagaaa tgataacaga agctgtaatg
      361 acatcaatgc ctgggatgga atccaatatt tctacatggt tttcatattg tgatagatag
      421 acattcattc gctcttccag caactcaatc tgcttctgat aaaaatcata aatctccaag
      481 gactgcttta acatgaagcg gtgatggtca gagaaataac cgtccaaggc ttccagaagc
      541 tgtggcactt tcttcttcaa gctggtataa acggattgat ggacaatgcg aggtgtgata
      601 ggcgtcccat caaccagtag ctgaaggaga ttgcgaccag atagccccat tatatcttcg
      661 atataggttg ttagcttgat accacctgac tgaagaattt tatggatacg attggtttcg
      721 cgattgcgac tttccacata atgttttcgc tgtctggtca actctctcaa ttcttgaatg
      781 gtttcatcgg gaacgaaact ccgaggaagc agaccaatcc gtgttaattt ggctatccag
      841 tgagcatcct tcttgtcggt tttctgacct gggatggcct tcatatgtgc tggttgagcc
      901 agtatcaact cgaagtcatc acatagagca tgccagacag gtcgccaata aacacctgtg
      961 ctttccatac caacagcttc cacatgaaat tgactgagaa aatcgtggca agcacgtagg
     1021 cctttagtcg ttgtatcaaa tgtagccatc tcacgctttg gacgagttga ggtgagtggt
     1081 ccatgtagga tacagacgac aatattggct tgatggacat caatacctgc acaagattga
     1141 tagagaacat ccatgataat tccctccttc taaaaattag agagcttatc taccgaattt
     1201 tagtcgtatt tttatactca tgcctatcgc atattttggg gtgctcgtca gtagagtggg
     1261 tcagtttttc cctcgatgac taacatcatt aactcgtcaa ccacaaagcc ctcactaaga
     1321 ttatacacct agtgagggct ttatgttcgt tttcattatt ctgtgggtga gggcggagcc
     1381 atcatggatg tctttcccgc tcccgtacca cttctctgat ttcgtcttcc cgttcccaaa
     1441 ataaaaaata ccagctacac cacatagctg atatttcaaa taattatttc ccacttctga
     1501 cacaagcctc gtaagtctgc tccatgagca tggtaatggt catcggacca actccacctg
     1561 gaacaggggt aatatgacta gcaacttctg atacctcatc gtatttgaca tcaccgatta
     1621 gcttgccatt ttcatcacga ttcataccaa catcaatcac cacggcacct ggcttaacaa
     1681 attccttggt cacaaaatga ccacgaccaa tggcaacaac aagaatatcg gcctgacgag
     1741 caagctctgg caagtttttg gtacgagaat gcgcaatcgt tacagtagca ttggcatcca
     1801 acagcagctg tgccatcggt ttaccaacaa tattagaacg accaataact aaagctgact
     1861 tcccttccag ctcaatctga tattccttga acatttccat aattcctgct ggagtagatg
     1921 gaatcatgac aggatgacct gaccagaatt tccccatgtt agccggatga aaaccatcca
     1981 catccttatc tgggtcaatg gccaacaaga ccttctcctc gctgatgtgg gatggtaagg
     2041 gcaattgcac caaaatacca tgccattcat catcctgatt atagcgctca atcaaatcca
     2101 acaagtctga ctcagaaatc gtatctggaa cacgaacaac ctcactcttg aatccagcag
     2161 ctagagctga ccgctcctta ttccgtacat aaacctgact agcaggattt tcgccaacta
     2221 aaataactac aagacctggt accaacccct tttcttcttt taatcgagca gttttctccg
     2281 ccaaggcagc ctgcaatttt acacctagtg ctttcccatc aatgactgtc ataccaacac
     2341 tccttttgtt ttttctatta taccctaaaa ttctccgact gactatactt gtccaaagta
     2401 gactatagca tatagcaaaa aactccgaac aatgtcggag tcgtacttat ttgttcattt
     2461 acagtcattt gaattaactt tgatacatcg tcactttcga cttgccgtac tttagtacag
     2521 cctgcgcctc agttccttgt ctgaaagcta attcattcga ctatattaca agaccttaga
     2581 caagaaatcc ttggtccgtt cttccttggt atgttcaaag acttcttcag gcgttccatc
     2641 ctccacgatg acaccgccat ccataaagat aaccctgtca gctacctcac gcgcaaatcc
     2701 catctcatga gtcacgataa ccatggtcat ccctgacttg gccaaatcct gcataacagc
     2761 aagaacttca ccaaccattt cagggtctag tgcagaggtc ggttcatcaa aaagtaggac
     2821 atctgggtcc atagccagac cacgtgcaat agcgatccgc tgttgctgac cacctgaaag
     2881 gctttgtgga taggcattcg ccttatctgg caatcctacc ttttcaagta attccttagc
     2941 cttcttctca gcctcatcct ttgcaattcc ctttgtctta ataggtgata aagtaatatt
     3001 atctaatacc gtcatatttg gaaaaagatt gaactgttga aaaaccattc ccatcttttc
     3061 acgcatcttg aaaatatcat ttgacttgtc agtaatatca acaccttcaa atgtaacagt
     3121 tcccttggtt ggcacttcta agaggttcat tgtacgtaag aaagtcgatt tccctgaccc
     3181 tgatggaccg ataataacaa ccacctggcc ttgttgaata tctaaatcaa ttccttttag
     3241 aacctcattc tttccgaagt acttatgtaa atccttgata gaaataatcg cattagacat
     3301 ggaactgccc tcccttgttc aactttttct caaacgactg aataatcact gttagcaccg
     3361 ttgtcataat tagataatag ctcgctgcaa atacaagtgg tgttaaagga atataagaag
     3421 tggattgaac tgtctgagca ccgttccata attccatcac accgatggtt gacaaaagtg
     3481 aactatcctt aacaatagtc acaaattcat ttcccaaggc tggaagaata ttcttgatag
     3541 cctgtggcat gataacgtaa cgcatcgcct gctttggtct aataccaagc gaataagctg
     3601 cttccagctg tccttttggt acagcattaa tacctgcacg aacagtttca gatacatagg
     3661 cacccgagtt catcgaaata acaatgatac ctggaatcaa gcgcgtcaaa tcaaccgtca
     3721 aaattcctag ctgaaaagtt ggtgctacaa aatgtgtcat cgcaaaagca atcataatct
     3781 ggacaatcat cggtgtccca cggaaaatcc agacatagat attggcagtc caagctaaaa
     3841 ctttatactt actacgctga gcaaaggcaa gcaacacacc taaaatacta ccaaaaaata
     3901 ctgagaaaaa tgcaataatg agggtaacaa ttgccccata attaaaataa gcccaatact
     3961 caggcaaaaa agaaaaattc attcatctta ctccaattct gtcatttaga gtctattata
     4021 ccatttttga atatttatgc aacacttttg tttataatat tcaatttaaa caagaaaaag
     4081 gcacccttag gtgcctctca cttcttctta gtacaatagc tcatagattt ccattgcaat
     4141 caagtcgatg ctgtcaaacg cgtacgtttc acgagcagca acatcacgca aggtaaatac
     4201 tgaaccattt tcctcgtcat agctataagc cacttctgca acaacaatac catcacgttc
     4261 gaaattacgt ttcaacgtac cgccgtcatt agccatagcc tccagacgat tgataattct
     4321 caccaaatgt gattccatat tcgttctcct aatccttttt ataggaatat tttaccacat
     4381 attaccaaaa aagtcttatt ttttccctat tttcttccta tcgccctatt tttcatagaa
     4441 agtttttcca agcgtagcag tttcttgatt tttctatgaa tcttgttata ataaagctag
     4501 aactgacctt ttttgactat ttaacaatag gtcacatttt ttcacagaaa gaggtagaat
     4561 tatgctctgc aaaaattgta atatcaacga cgcaacgatc catctctaca ccaacttaaa
     4621 cggtaaacag cagcaggtag acctctgtca caactgctac caaatcatga aaacagaccc
     4681 taataatgcc attctacgtg ggttgggaga tttaacaaat cctaacaata tggatccctt
     4741 tagtgaattc ttcaatcacc taggtggcta tcctggcaat acccctgctg gaaaaaatcg
     4801 cgaacagact cctcccactc aagccggtgg gcataatgga cgtggtggac agacccctcc
     4861 tccgcaacaa ccccaacaac caaatgggct ccttgaagaa tttggtatca acgttaccga
     4921 aattgcccgt cgtggggata ttgatccagt aatcggtcgc gatcaagaaa ttacccgtgt
     4981 catcgaaatt ctcaaccgtc gtacaaaaaa caaccctgtt cttatcggtg agcctggtgt
     5041 aggtaaaaca gcggttgttg aaggcttggc tcaaaaaatt gtcgatggcg atgtcccaca
     5101 gaaattacga gacaaggaag tcattcgtct ggatgttgtc agcctcgtac aaggaacagg
     5161 tatccgcgga caatttgaag aacgcatgca aaaactcatg gaagaaatcc gtaatcgtcg
     5221 cgaaattatt ctttttattg acgagattca cgaaattgtc ggtgctggtt ctgcaggcga
     5281 tggtaacatg gatgcaggca atatcctcaa accagccctc gcacgtggtg aaatgcaact
     5341 agtcggtgca acaacgctca acgagtaccg tattatcgaa aaagatgccg ccctagaacg
     5401 ccgtatgcaa cctgtaaaag ttgaagaacc aagtgtcgaa gaaaccatca ctattctcaa
     5461 aggtatccaa aataaatacc aggattacca tcatgttaaa tactccgatg ctgctatcga
     5521 agctgccgca gtactgtcca accgctacat tcaagaccgt ttcctgccag acaaagctat
     5581 tgaccttctg gatgaagctg gttcaaaaat gaatttgacc ctcaacttta ttgatccaaa
     5641 ggaaattgac caacgcctga ttgatgccga aaatcgtaag gcacaagcta cacgggatga
     5701 ggactatgaa aaagcagcct atttccgtga ccaaattgct aagtacaagg agatgcaaaa
     5761 ggcaactatc agcgaggaag atattccact cattactgaa aaagaaattg aggccatcgt
     5821 tgagcaaaaa acaaatatcc cagttggtga tttaaaagaa aaggaacagt cccagcttgt
     5881 aaacctcgct agtgacttaa aagcccatgt tatcggacaa gatgaagcag ttgacaagat
     5941 agctaaagcc atccgccgta atcgtgtcgg tctcggtgct ccaaatcgtc ccattggatc
     6001 cttcctcttt gtcggaccaa caggtgtcgg taaaaccgaa ttgtctaagc aattagctat
     6061 cgaactcttc ggttcggctg acagcatgat ccgcttcgat atgtccgaat acatggaaaa
     6121 acacgctgtc gctaaactcg tcggagctcc tccaggctat gtaggctatg aggaggctgg
     6181 acaattgact gaaaaagtcc gtcgtaatcc ttactcactc atcctccttg acgaagttga
     6241 aaaagcccac cctgatgtca tgcacatgtt ccttcaggtc ttagacgatg ggcgtctgac
     6301 agatggacaa gggcggactg tcagcttcaa agatactatc atcatcatga catcaaatgc
     6361 tggtactgga aaagttgaag caagtgtcgg ttttggtgcg gctatggaag ggcggactca
     6421 atcagtcctt ggccaactta gcaatttctt cacacctgaa tttatgaacc gatttgacgg
     6481 tattattgag ttccaaccac tgagcaagga aaacctactt gaaatcgtta gcctcatgct
     6541 agacgatgta aacaaacgcc tttctcacaa tggcatcagc ctccatgtaa cagataaagt
     6601 taaggagaaa ttagtggacc ttggctacga tccaaagatg ggagctcgtc cactacgcag
     6661 aaccatccaa gatcagattg aagatgctat caccgacttc tacttagaac atccagcaga
     6721 aaaagaccta cgtgctgtca tgtcaagtaa aggtacaatt caaatcaagg cacaaacaaa
     6781 gacaaaataa gaaaatagag ctgctctcta cgagtagcct attttactgt tttgctactt
     6841 tatttttcta aatttttccc catctccatc ctataaaaaa actttacttt gtaaagccta
     6901 tcacaaggaa aaataataaa aaagtggtat aatgtataca actcattcca ataatgaaag
     6961 aggatagaat tgcctatgga gaaaattgct gtatttggag aaaagaaggc tggcgtcagc
     7021 taccagagtc gctttggtgt ttacgcagtt atcccagatg aaaagaaaga acagatcata
     7081 ctcgttcaag caccaaacgg agcttggttt cttcctggtg gagaaattga aaagggagaa
     7141 aatcacctca ttgctttgga gcgcgaattg atggaagagc ttggattcac cgctgaaatc
     7201 ggaaaatact ttggtcaggc tgacgaatac ttctactcta gccaccgcga tacccatttc
     7261 tataatccag cctacatcta tgaagtaact agctaccatc aaataggaca accactagaa
     7321 gatttcaacc atattgcttg gttcccagtc aatgaagcca tcgataaact caaacgtggt
     7381 agtcacaaat ggggcattga acaatggaaa ttgcaagaaa attcattcaa taactagtaa
     7441 aaacactcta atcgtgctat aatgtagcca aagagataga ggaggttcca catgaaaatc
     7501 attaacacga caaatagtca tcccaatctt gtccaaagcc agttggctaa tactgatgct
     7561 ttcctagtag agacttattc tgcaggtaat acagacgtta ttttcacaca ggcaccccgt
     7621 cattatgaac tcttgattag taataaatac cgtgcagtac aacaaaatga aatcgagcaa
     7681 attcgtgatt tcttccttca tcgaaaaatt gatgaacgaa ctattaacaa ggctgccatt
     7741 caaacgattc acacagaccg tttgattgaa atgtctattc ccattatcgc agaagtgtaa
     7801 gaagccagat ggcttctttt ttctatttat actcaatgaa aagcctagga aacgaagccg
     7861 aagatagaac tggagttcat caaggctctt gacaacggat aattttgatt ttcgaagagt
     7921 attacaaaaa agcctatcgc tagatagact ttaacaaatg tattgtgatt acttaggctt
     7981 caaaaccttg agctactgct cctgggaagt tttcttctac tacgcttgca cagtggtcac
     8041 aggtggttgc accatagcta cgttctacaa cgctggtatc aattcggcga caacggtcac
     8101 acacttcacc tgctgcacgt tcaacggtaa aggcaacttc atctaccaga acagcgctct
     8161 caggagctgc atccgttgtt actgtcaagt ttgaaacgat gagcaattga gcaagatctg
     8221 cattcaagct ctccaagaag gacttggttt cagctgagac ataggcagtc aaatgagctt
     8281 caagtgactt accaatcact ttggcattgc gtgcttcttc caaggctttt tgtgcctgag
     8341 tacggaagac cataaagctt tcccaatcag ctaaaagctg cgcttcatta gcaaaggttt
     8401 ccacctctgg catttccgcc aattggacaa actcttctgc ttcgtgttcc aaatatgacc
     8461 agatttcctc tgctgtgtgt ggcaagattg gggtcaagag cttggtaatt ttcaccaaga
     8521 tgtcatagaa aactgtctgc atctgacgac gagaaaggga tttagcacca tcaatataaa
     8581 caacatcctt ggcaaagtcc aagtagaaag ctgacaaatc aagggttaca aagtttacta
     8641 cagatttgta gatgtccatg aaatcataat tgtcgtaggc ttgacggatt tgagctacca
     8701 atttattgaa tttcaccaag agatactggt caacagaacg aagctcttcg tatgccaccg
     8761 catcacttgc aggattgaag tcagaagtat tggcaatcaa gaagcgaagg gtattacgga
     8821 ttttacggta ggtttcagaa acctgtccaa gaatatccat agacacacgt acgtcgtttg
     8881 aagtatccac agaagttacc cacagacgca agatttctgc accaaattgt ttctcaacat
     8941 cacttggtag aatggtattt cctagagatt tagacatctt catgccttta ccgtccaata
     9001 caaagccctg tgacaagaca gccttgtatg gggcatgacc atttacggct acagaggtaa
     9061 tcaaggatga gttaaaccaa ccacggtatt ggtctgaacc ttcaaggtag aggtctgctg
     9121 ggtaggcaag gttttcacgg gcgttcatga caccattcca agatgaacca gagtcaaacc
     9181 atacgtccat gatgtctgtt tctttggtaa attcgccatt tggtgaacct ggatgagtga
     9241 aaccagctgg caagagatct ttggcatcag atttccacca gatgatagaa ccatgctctt
     9301 caaagagagt agctacatgg tcggttactt ccttagtcat gattgctgtt ccatcttccg
     9361 cataaaagat tggcaatgga acaccccaag cacgttgacg ggaaatcacc cagtcgccac
     9421 ggtcacggat catgttgtaa agacgcgttt taccccaaga tggattgaaa gttgttgctt
     9481 cgatttggtc caagatttcc tgacggaatt tagaaacaga ggcaaaccat tgcggtactg
     9541 cacgccagat gattggcttc ttggttctcc agtcaaatgg gtaggagtga ttgatcactt
     9601 cactagcaag gagcaagtcg cctaattttt ccttaaccgt tggtacaacc ttatcataga
     9661 attgcccttc aaaatcagga cccgcagctt cattcatcaa gccacgttcg ttgacagtta
     9721 ccgcaacctc caaatcatat ttgacaccga cattgtagtc atcctcacca aagcctggag
     9781 ccgtatggac gataccagta cctgagtccg ttgtaacatg ctcacccaag ataaccaatt
     9841 catcaacttc tctatcccat gggtgttcgg tcacgatata ttcaaattca gcacccttgt
     9901 gttttgaaat cacttcaaaa gattcccaac cgaatttggc tgccaagcta tcaaccaagg
     9961 cttctgccaa gacatactta cggtcagagc cagcaggttg aaccaaaaca tagtcaatgt
    10021 ctgctcccat ggtcaaaccg cgagaagccg ttactgtaaa tggagtcgtt gtccagacaa
    10081 caatgtagct atccgtatcc aagagcccct tgccatcttt gaccttgttg gcatagtaga
    10141 gggaagttga gtcaatgtca tggtattcga tttcagcttc tgcaagggca gactcagatg
    10201 accatgacca ataaacaggc ttagcaccgc ggtagatata gcccttgtct gccatagcac
    10261 cgaagacacg gatttgagct gcttcgtagt cttttgtcaa ggtgatgtat ggattttccc
    10321 agtctgcaga aacacccaag cgtttaaaat catcacgttg cttgtcaact tggctgagag
    10381 cataatcacg acacatttca agatattcaa ccaggtccat ttccttgcgt ttgacacctt
    10441 gttttgccaa gacttgctca ataggaaggc cgtgtgtatc ccaacctggt acaaatggag
    10501 cacggaaacc agacattgac ttagagcgaa cgataatatc tttagaaatc ttgttcaaag
    10561 catgtccaac gtggatattt ccgtttgcgt atggaggtcc atcgtgcaag tggaaggctg
    10621 gtttgcctgc gttgagttct tggcgacgag catacaagtt tgcttcatcc caggcctttt
    10681 gccattctgg ctcacgtgtt ggtaagcctg cacgcattgg gaaggctgtc ttacctaaat
    10741 taagtgtttc ttttagtttc atcataactc ctttatttta tacttaattc cattttcatt
    10801 tcttggcctt ctaaaccaat gaattgaaag ccaagttttt ctaagatata cctcatttta
    10861 tgattaccaa tgacataatt catcgtaact ttttgacata aagtatcttc tttggccaga
    10921 accagaattt gtcgaatcac ttctttacca tgtccgcgat tttgatactt cttatcaatt
    10981 aacaagcgcc agacatagta actcttatct tcttgtattg acaacaatac aaaacctacg
    11041 actttctgtc ctgatttgac agcataaggg agaagatgtc cgtcctctct atacagccat
    11101 gcctgagcta atgaatattc aactgacgcc actcggcgtt ggtctttagg tgccacttca
    11161 agatctagca cctgatcaaa attatctttg tttaccagtt ctaatcgtat cataaaaaat
    11221 ataaaaaact cccgccaaat aaggacgaaa gttcgtggta ccaccttagt ttagatagag
    11281 tttcccctat ccctctatgt tcgtaacgtg aacggacgtc tttccttact attttcagga
    11341 aaaatcaaac aaagtgatga tccatagaaa gagattgtag ggcttccacc atctcctact
    11401 cgctataaat atttctaccg accgtgtctc tgcatatgat ctttattatt cttctgttga
    11461 aatttctaca gaatctccac tctcaaaagc cactgcctga cgagttaatt ctgcaatttc
    11521 ttctggtgtc aattgacgtg tataatccaa actttcttct tcaacaggta attcttcatc
    11581 caaagcctta tgaagaacat cacggaaagc ctcgtcactt gtttgaatgt aacttgctgt
    11641 tgggcgaagg atttcctccc attcagatga attaaccaat gataattggc tttctactgt
    11701 tgatttcaga cgctgatgga aaatacgtgt ctggtttttt aattcttcag tctcaatgac
    11761 aacttttttc gcgttgtcag tcgcattacg aagaattgca tttgccttat ctttagcttc
    11821 atgtaacaat gttgccgcat catagtcagc ttgtttaata atatttgctg cttgatcttc
    11881 ggccgcaacc tttactttct cagctgtatc ttgagctaaa agaactgatt tactcaatga
    11941 ttctttcatc tcatcaaaat aagccaaacg ttcccgcaaa tttttcaatt ctaactcttg
    12001 gtcatgattt ttacgaatta aatcctcata atcacgtgtt acaatgtcca aaaagtcatc
    12061 aacttcatct gcgtcgtatc ctctaaattt tgtagcaaag gttttatctt ttaattctaa
    12121 tgcagtaagt gccatctttc ctcctaagtt ttaacaatgt ctaacttcaa ttttatcttc
    12181 ccttgcttag aaaaacctaa aaattcattt aggcgaactc taccatatct cctaacacta
    12241 attaattgcc ctatttcaac taatttactg gtttgttctg tcagaacata atccaacttc
    12301 acatgtccag cctcaatcaa cttgtttgca gttgcccttg aaagattaaa tgcgaccgaa
    12361 atcaatttat ccaatctcat actggaaacc aacacatcct ttgaacgcca ttcctgtcca
    12421 atcggtagtc gaacagtcgt ccattcttct tcctttccct taacagggac acgagcaact
    12481 ttagtgatag attgtaaggc aatctgccca aatttctgat cgataaagac aatcaatcgt
    12541 tcatcatcaa tcaaaatatc acccaaatac tcccttttaa tccctagttg attgagaaaa
    12601 gttccaagaa cttgtgaatg ggataaggtg tgaaattttc tagcatagga caaatgaaga
    12661 gcggttaact caaagtcctt gatgtccaac tcataataag ccggggcaat aataacccgc
    12721 gaatgttcag tcgaaacaaa gtcccgacta gaaaatgttt gtaactggta gtagttagca
    12781 attttgcata caatttcatc ttgtctagga tgtaaaaact gagttaatct gtatgaatac
    12841 gtatcttcaa cttgctgaca catatccatt attttctcta caaactctct ttcttcccta
    12901 gaaaaatgtt gcaataagtt tttgtcattt ttcataacta tgctaacagg agcaataatt
    12961 gaaccaagaa gcgtgttccc atattaagcg caatcatggc tgccattaca gtccaatcca
    13021 accccataaa ttgcagatta aatcgcctaa agggttttaa aatcggtgct accagccatt
    13081 gaatcaaacg tccaattgag cttgtgtata ggctaggaaa ccaacttagc aaagcatatg
    13141 ctaataagag ataggaataa atttctacaa tttttaatag taaaaaaatc aaaatttgca
    13201 tagtgttacc gttttatatc aaagtcaaaa tttgaatcag ccacaccagt acttgtacca
    13261 gcattgcgca attcttcaat attgactgtg acatttactg gagttaacag ccacatggta
    13321 tttgagacct ttttcaaatt tccagataat actgaacgag caccatccaa gtagtctagg
    13381 caacgtctag cttgttgctc cgacatatat tgaaaatcaa tgagaatact cgcattatct
    13441 aataaaagat ttaccatctc tggtgcatct tcataacgtt ttggaaactt aatatcaatt
    13501 gtagttttga caatctcttt ttcgttatta ttagtcatca attcttgctg cctttcatgt
    13561 aggcgttgaa gttgactttc tgaacgtgct tcccgacgcg tctctacttt tggctgctgt
    13621 tcgcgcacag gtgcagctgt agtgttggca acacgcattt taggacgatc attaggcatt
    13681 gaataggcat ctgcctgttc ttcaacttca ttgacttcgt caacttcaaa gtaattaaat
    13741 aagttcttaa atgtatcttt taatgccata ttttcctcct ctccattatt caaagaatgc
    13801 tgagccaatt ctcacatatg tagctccgtg agcaatggcg cgttcaaagt ccccactcat
    13861 tcccatactt aactctgtaa agggcatacg tggtaagttc cttgtagcta gttcttcttg
    13921 gatttcctgc attttagaaa aaatctcgtc taattcatca tctgtagcat caatcggtgc
    13981 catcgtcatc aatccaacaa gttcaatgtt ctccaataaa ctaatttcag caagtgccgc
    14041 atcaatctca gatactgcaa agccatgctt agtctcctca ccggaaacgt tgacttggag
    14101 gaaacacttg actattttag tcgcacgttt atctatttcc tgagctagtt tgacagagtc
    14161 tagggcgtgg aaataatcaa caaatggaat aatgtccttg acctttcttc tctgtaaagt
    14221 ccctatcaaa tgccatgtca attgtttgtc tgctagggca ttatactttt ctaagaactg
    14281 atcgactcga ttttctccaa tatgggtaat cccagcattc acaagctgat tagcaataga
    14341 gctgtcaaca tatttggtga cagctattac ctttactgat tcactcggac gatctgcctt
    14401 ctcagcagct tttgccactg ctgaaaagat agcatcctta ttcttttgaa aattcatttt
    14461 agtttagcga ttacggaaga atggtggtgt atccaattca tcctcatctt gatccattgt
    14521 aaatttttcg actgaaacag tggatgttgg ttctgtgtca gttggacgaa tcaagttttc
    14581 gcgacgcaaa tcccactctc cgaaggcaga agctttcggt gcttcagttt gttgtgcaac
    14641 tccacgagtt ggtgctgatg ctactgaatg atcaaagcgg tgagaagggc gtggtgaaac
    14701 agcttccgcg cgatggcggg ctggtttatc agcagtatct tgacgaacac ctgtagccac
    14761 aacagtcaca cgaatctcat ctttcattgt ttcatcaata gatgtaccca accaaatgtt
    14821 aacaccttga cccgcagcct gattaacgat ttctgaagca tcttctgctt ctgtcagagt
    14881 catgtcataa ccacctgtaa cattgacaat gacatcctct gcaccatcaa ttgttgtttc
    14941 aagaagagga gaataaatcg ctttacgagc cgcctcaatc actcggtcct caccagtacc
    15001 gataccgata cccatcaagg cgtttccttt gttttccata actgtcttca catctgcaaa
    15061 gtccaagtta atcaaaccag gatttgtaat caagtctgta attccttgaa caccttgacg
    15121 aagaacatta tcagcttcgc ttagtgcttc taaaagcggt gttttcttat caacaatttc
    15181 aagaaggttg ttgtttgaaa taattaagag tgtatctact tgttcgcgaa gaccttcaat
    15241 tccctcaatc gcaaagtttc cacgtttatt accttcaaaa ccaaacggac gagtcacaac
    15301 tgcgacagtc aacgcaccca agtttttagc aatacgtgca ataacaggag ccgcaccagt
    15361 ccctgagcca ccgcccatac cagcagtgat gaagaccata tctgcaccag ttaatacatt
    15421 agtcaatgct tcttcgcttt cctcagcagc tttacgacca acctcaggtt gacccccagc
    15481 acccaaacca cgagtcaatt taggacctag ttggataact gtttcagctt tagagctact
    15541 tagcgcttgt acatctgtgt ttgctgcaat gaactcaacc ccagcaacac cttcttcaat
    15601 catacggtta atcgcgttcc cgccaccacc gccgacacca attactttaa tgacagcacc
    15661 atgactagct gctgcttcaa atgaaaatgc catagtttaa atcacctttt cttttctctt
    15721 attcaaacat gctgccaaac aaaccacgaa tgcgatctgt gatgtttccc ttagcagctg
    15781 gacgaacttc ttcttcctca tcatggtaag taggagcaac ttgttcctct acctgatcaa
    15841 ctgtgttcaa ttcgttcacg atttctcttt gaattggctg actaatccga ggacgagcaa
    15901 caggaatttc aactggctta tgtctcaagg tagtttcacc atttactgca tgttgggcaa
    15961 tattttcaac atcttctaac tcaccaacat actcaacaaa gctaatcaca cttgcaaatg
    16021 ctggattgcg gataccaatc tgatttggaa caaaaagttt agtgttaaca ccaaacactt
    16081 cttgggccaa ttctgtaatt cctggtaaga tagcaccacc acctacaata acaatgcctc
    16141 ctggtaaatc tagagcacgt gtacgctcca aatcttgttt cacacggtca aaaatctgac
    16201 gcagacgtgc cgctatcact tctgaaaggt agcgctcggt cacttcaact ggagcgtttt
    16261 ctccaatcac gtcaacagtg aatttttcct tatcacttgc atcttgcgga taggcaatgc
    16321 cgtagttgta tttcaagttt tcagcgatac tctttgaagt tgtcaatact tttgaaatat
    16381 cgtttgtgat ataatctcca ccttcttggt agatgtttgt atattgcaac tcttggccac
    16441 gcataacagc cacagtcgtt tgaccgccac caagatcaat gacagtcgca ccaaactcac
    16501 gttcaccttc attcaataca gagcgagtta gtgccaacgg agaaattaca atattttcaa
    16561 cttggacacc tgcacgctcc accgttttac gaagattgtg aagaatggta cgtgggcctg
    16621 tgtacagcat accacgcatt tccaagcgaa ttcccatcat tccacgaggg tccttaatgc
    16681 cttggaatcc atcgacagtg aactcttctg gaataaatga aatcacttcg cgttccggag
    16741 tcatactctt cgtcaatgct gattttacaa cattctcaac atccaagtct gtaatttctt
    16801 gtgaatctgt tgtaacagga atcatccctt gagtcggttc aatctgaaga aggttggcag
    16861 gtaatccaac atttaccttt tcaatgcgga tacctgactt ttcttctgcc tgctcgatcg
    16921 cttttttaat cgctccagca gccacctcaa tatttacaat aattccatct ttgacgccag
    16981 cactttttac attgctgacc ccaatcacat tcatttcgtt atcaatatat tctgcaacca
    17041 agactttaac ggagcttgta ccaatatcta atcccgtaaa aaagccgttt ctagccattc
    17101 tatcagtcct ctcttacttc caactttaac aaatcatctt ccattttgaa aaatagtata
    17161 attagtcatc attcattata ccatattata tcgaattatg gtgtttttaa aggatttttt
    17221 tattactttt tctttacaaa attatctatt tcagcttgca tatctataaa taccaacttc
    17281 catatcaatt gtcgttggaa ctgtcacttc tgccgctatt tttgtatagt aaggcaactt
    17341 ctggctaatc tcactcaatg gaactaaaac cgtgtttcca tctgccatat tgagtgtcag
    17401 caaatccgcg gtcactttac ttggcgttaa atttattgtc tgaatagcag aacgaattcc
    17461 tgtatctatt ttacccaatt caatggccag ttccttgatt aattccttgt cggataaatt
    17521 tatcgttgtg tagccttctg gcaatgaatc ctgtgaaacc ggctctccgc caaccactcc
    17581 actagacagt actggatacc actgactttg ttgctgaatg taacctatga tagcgtattc
    17641 tttaatttga atcgtaaagg tagctggaaa ctggaacttg attgttgctg tctctacaga
    17701 cgaactattc ttcttaatat tctttgcgta agcatctgca tgcaaagcta tggttacaat
    17761 gtaatcatct ggagaaatca gactataatt ttccacctgt tcagcagtta gtcgctcatt
    17821 tccaacgacc tctatttgtt ttttcttgct ggttggagaa ataaaataca aggctagagc
    17881 tgccagtaac aaactcgtca caagaaccgg aatagctttc cagactacct tggaaggaat
    17941 atcaactttt aaagactgga cctttttctc tgtttctttc ttggattcca gactctcttg
    18001 tcttctgttt attccctgaa aaaagaccct tttactcttt ttagcttctg ggttcttctg
    18061 ttctgtctgc ccctcgtcaa ctgcctgaat atctgcgtca tctttatgag caaggtaggc
    18121 ttggtggcgt gctttccatt gttcgaaaaa ggcacttttt tcatcatccg aagcagtcat
    18181 ctcaggtatg tctacatccg tagaaagccc tttttcttcg gctaatacag attctttctc
    18241 tgctggtgaa atttgttccg aatccaattc tacttgggat gcctgttcca cttctagcac
    18301 tgattcttct acatttgaat ctttttccgt catagaacct accttcccat atcttctcta
    18361 agcaaattgt aaaaactatc tactgactga atttcattag aatttgccat gttttggata
    18421 taaaattcct tatgtttcaa tagttcatcg acttctacta acaggctggc aaatgtcaat
    18481 tgactttcat caatctgctt agaatatcct tttttctctg catagagagc attttcaatc
    18541 tgatcccctc gactggcctg tcgtcctaga ggcacaatca aatggagttg ttgcatggca
    18601 atcaactcaa acagagtatt ggaaccacca cgggtaataa cgacatccgc taaatccatc
    18661 aacggttgat aaagttctgt cacatagtca actctatata ggtttttatc taattggttg
    18721 agactactat cccctgtcaa gttgataata ttgaatcgtt cggtcagagc agcactattc
    18781 tgactgatta aatcattaaa gaccttagca ccgcccgaac cacctacaaa cagtagggtc
    18841 ggcagacttt tatcgaagtg actgagaatt tctggcaact ggattggtgt aactttgtca
    18901 ttcgtttgcc ccacttttgt aaccgcgcca acatgtttta ctttagtcaa gctggcaggt
    18961 tgctcaaaag tactatacat ggttgtcgca aatttatagg ctattttatt ggccagtccc
    19021 attgttaagt ctgattcatg gataaagacc ggaacccgca gcaaattagc agcaataact
    19081 ggcggaaccg atacaaaccc accttttgaa aaaagagctt gcggacgaat tttagcaata
    19141 atggccaagg attgaagtac accgaaacca actttaaaca cgtccaacat attttggaag
    19201 gagaaataac ggcgcaattt tccagtcgaa atagaatgaa aatggacatc taaacctgat
    19261 ttcacaacct gctcatgctc aataccgttc ccatcaccaa tataatgaac ttcccagcct
    19321 tcttccaaaa atcgcggaat caaaaggaga ttgagcgtca cgtgcccaac agtccctccg
    19381 cctgtaaaaa caattttttt catgattatt tcaactcctc aaaggtctgt aagaagacgt
    19441 cgccacgcac ttcaaaattg gcatacatat cccagcttgc attggctgga cttaaaagga
    19501 caatatctcc tttttctgca atggcaaagg cttttctagt cgcatccgca atatcgagag
    19561 cttctatcgt ttccacttct gccttatctg cagcacgttg aacacgggga gctgattgac
    19621 caaggatcac cattttcttt agtccgacca aatctggaac taattcatca aattcattgc
    19681 cacggtccaa gccacctgca atcaaaatga ccttgctatt gtcaaaccct gaaagagctt
    19741 tttgagtcgc caagatattg gtagacttac tatcattgta gaaggaaacc ccattgattt
    19801 cacctacaaa ttgcaagcgg tgtttgacac ctccaaaggc agacaaactt tcctgaatcg
    19861 cttggtgatc tactcccaac aattttgcaa ccacaattgt tgccaaggca ttttcaacat
    19921 tgtgtgaacc tggaacacca atttggtcag catccatgat gtattcaccc ttgaaataga
    19981 gttttccatc tgccaaataa gctccatcaa ccacctcctg tgttgaaaag ggaactacag
    20041 ttgccttggt ctgttcagcc aattccttag cttctttctg gttgaagttg agcaccacaa
    20101 aatcctcagc cgtcatctga cgctgaatca tccatttggc tactacgtag tcttcaaaag
    20161 tcccgtgata atcaatatga ctggcaatga gattggtcac aacggcgata tgcggacgga
    20221 aagattctgt tcccattaac tggaaagacg ataattccat gaccaaggta tcctctgcag
    20281 tcgcagtttg agcgaccgaa gatgctgggt aaccaatatt tccacataat tttgcaggtt
    20341 tatttccagc attcaagact tctgcaatca tggtcgttgt cgttgtcttg ccgttcgaac
    20401 ctgtaatccc cacgattgga gcatctgata ccaagtaggc caattcaacc tcagtccaaa
    20461 ctggaattcc ttttccgata gctttttcaa ccataggatt atcatagcga attcctggat
    20521 tttttaccat caaagcgaaa tcttcatcca ataattccaa gggatggctc ccgcaaatta
    20581 cacggatacc atcttccaac aaagattgag cagtcggatt ttcttcaaaa ggctttccat
    20641 cgttaacagt gacgatagca cccaatttat ctagtagacg ggctgcagat tcccctgatt
    20701 tagctaaacc tagcactaac actttcttat tttttacaat atcaatcatc ttcatctcaa
    20761 atacctttac tttctaacac cttattttac cctttacgaa gacctttttc aagccagagg
    20821 acagaaaaac cgacgcaaag cgtcggttaa tttcatctat atctataagg accaggtcgc
    20881 tctgttctcc tctgcctgtc tttcggttct ttatcgagat aataaatatc ccgcatcgcc
    20941 caaaaaccaa tcagaatcat tagtagacca acccaaattt cctttgaaaa ttgcatgatt
    21001 cttaaaaatc caagtaccaa ggcaatcgct aatgctacca gtaaaaatac tgccgcaatc
    21061 aaattcatag tccccttaat attgcgaggt gccacaaata tataaaaaag tactaacatg
    21121 atggcgagga ttaaataaaa catgcttctt ctcctagaaa ttattcctca gttgctaatt
    21181 ttttcttctt agctgccttg tcacgctctg ccttgttcaa gatttgttta cgaaggcgga
    21241 tagactcagg cgttacttcc atgtattcat catcgttcaa gaattctagt gattcttcaa
    21301 gagtcaagat acgtggtgtc ttaattacag acgtttggtc tttggttgct gaacgaacgt
    21361 tggtcatttg tttagcagtc gtaatgttaa cggtcaagtc attttcacgt gagttttcac
    21421 cgatgatcat tccttcgtac acttcagtac ctgggttgac aaagatagtt ccacgctctt
    21481 cgatacgcat gatagagtaa gtcgttgcct taccttgatc gatggaaacc agagcaccgc
    21541 ggtggcgacc gccgatttca ccttggacaa ctggcaagta ttggtcgaag gtgtggttca
    21601 tgataccgta accacgtgtc attgaaagga attctgttga ataaccaatc aaaccacgcg
    21661 caggtacaag gaaaacaaga cgagtttgac cattacctgt cgcaaccata tccaacatat
    21721 cacccttacg ctcagatagg gattggataa cagaaccttg gtattcttct ggagtatcga
    21781 tttgcacgcg ctcgaatggc tccattttca cgccgtcgat ttccttgatg ataacttctg
    21841 gacgtgatac ttgaagctca tagccctcac gacgcatggt ttcaatcaag atagacaagt
    21901 gcaattcacc acgacctgaa acagtccatt tgtctggcga gtctgtaggg tcaacacgga
    21961 gagaaacgtc tgtttgcaac tcggccaaaa ggcgctcttc aatcttgcgt gatgtcaccc
    22021 atttaccttc acgacctgca aacggtgagt tgttcaccaa gaaagtcatt tgaagagttg
    22081 gctcatcgat acgaagaact ggaagtggct caaccgcatc agttggtgtt acagtttcac
    22141 caacgaagat gtcttccata ccagaaacag caatcaagtc acctgctttt gcttcttgga
    22201 tttctttacg ctcaagtcca aagaaaccga agagttttgt aacgcggaag tttttcgttg
    22261 taccgtcgag tttagaaagg gtaacttggt cacctacttt aacagtacca cggaagacac
    22321 gaccgatacc gatacgacct acgaagtcgt tgtagtccaa aagggatact tggaactgca
    22381 aaggctcatc tgagttatcg actggcgctg gaatatgctc gataatggta tcaaaaattg
    22441 gtgccattgt ttcttcttgg tctgctggat tatcagacaa agatgaagtt ccgttgatgg
    22501 ctgacgcgta aacaacaggg aattccaact ggtcatcatc tgcacccaat tcgatgaaga
    22561 gctcaagcac ctcatccaca acttcttctg gacgagcaga aggcttgtca attttgttaa
    22621 caacgacgat tggtgtcaag ttttgttcaa gggctttctt caatacgaaa cgagtctgtg
    22681 gcatggtacc ttcgtaggca tccacgacaa ggacaacacc gtcaaccatt ttcatgatgc
    22741 gctcaacctc accaccgaag tccgcgtgtc ctggtgtatc catgatgttg atacgagtac
    22801 cgttgtaagc tacagcagtg tttttagcaa gaatagtgat tccacgctct ttttcgatgt
    22861 catttgagtc catggcacgc tcatccaact gcgtacgttc atcaagtgtt tgggattgtt
    22921 tcaataattc atcaacgagg gttgtttttc cgtggtcaac gtgggcaata atggctacgt
    22981 tacggatgtc ttctctaagt tttgtcataa tatcctctat atattttaat
//
LOCUS       DASGAC010000013        22757 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.013, whole genome shotgun sequence.
ACCESSION   DASGAC010000013 DASGAC010000000
VERSION     DASGAC010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 22757)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22757)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22757
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.013"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            104..1102
                     /locus_tag="U1335_000421"
     CDS             104..1102
                     /locus_tag="U1335_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004192896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM5230931.1"
                     /translation="MKVLLYLEGKTVLEKSGIGRALQHQMEALDMAGIPYTTDLLGDY
                     DVIHINTYGPRSWLLLHAAKRSGKKVIMHGHSTKEDFQNSFIGSNTLAPFVGKYLASM
                     YQKADFVITPSEYSKKLIQSYGVTTPIIAVSNGIDLDKYKKDERKEAVFREHFKIEEG
                     QPVVVCAGLYFRRKGIEDFVKVAEKMPHVRFIWLGSINKWLIPSYIRKIVEGDHPANV
                     EFPGYFKGAVFQGAMSGADAFFFPSYEETEGIVVLEALASHQHVVLRDIPVYDGWIDE
                     NVAELGHTVDDFVDSIQKILDKQVDKREAGYQVAVSRSIDNVSHQLVDAYRQVLEM"
     gene            1103..2416
                     /locus_tag="U1335_000422"
     CDS             1103..2416
                     /locus_tag="U1335_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEM5230932.1"
                     /translation="MRIGLFTDTYFPQVSGVATSIRTLKTELEKLGHTVFIFTTTDED
                     VNRYEDWDIIRIPSVPFFAFKDRRVAYAGFTDALKIASRYKLDIIHTHTEFSLGILGK
                     MIAKELDIPVVHTYHTQYEDYVHYIAKGRIIRPGMVKYLVRAFLKDLDGVICPSEIVE
                     DLLMSYNVPISKRVIPTGIDLAKFDRPEIGKDETDELREQLGIASDETMLLSLSRISH
                     EKNIQAIVQAMPKILLENPKVKLVIVGGGPYTDDLQEMIAELNLDEHVQLTGMIAPSD
                     TALYYKAADFFISASTSETQGLTFLESLASGTPILAHSNPYLKNVITDKMFGTLFIRE
                     QELADAVVEAIVATPPMNPYVLDKKLYEISSTNFGRKVFEYYLDLKISYDFRKEHTNQ
                     DSVAEALIKEAIYLPQKVVVKSTDTTAKILKKSVEQVKSIRNFFE"
     gene            2431..2805
                     /locus_tag="U1335_000423"
     CDS             2431..2805
                     /locus_tag="U1335_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230933.1"
                     /translation="MEKLRKESWKNLVLATLIILSMYAGIYLIAFHLISDTMLSKVLV
                     VGNILLYTPIVLFLTGLLYGFFHGFSPSLLALVLLLYPVTIFFFKEWIILYQIVYTLC
                     ALIGNGIGALLFYLRKKSKKNP"
     gene            3069..3398
                     /locus_tag="U1335_000424"
     CDS             3069..3398
                     /locus_tag="U1335_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000422773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like protein"
                     /protein_id="HEM5230934.1"
                     /translation="MKLTSIPQETIDRCLAIRKAYRELEVKHHDKEWSIEEDLLALTN
                     DIGNMNRLIMTKQGRYYDETPYTLEHKMAENIWWLIELADRLDIDIQKEMETFLTQKE
                     ELLGIKK"
     gene            3548..5497
                     /gene="thrS"
                     /locus_tag="U1335_000425"
     CDS             3548..5497
                     /gene="thrS"
                     /locus_tag="U1335_000425"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018164389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEM5230935.1"
                     /translation="MLKITFPDGAVREYQAGVTTVEIAESISKSLAKKALAGKFNGKL
                     IDTTRAIEEDGTLEIVTPDHEDALDILRHSAAHLFAQAARRLFPDIKLGVGPAIQDGF
                     YYDTDNAAGQISNEDLPRIQEEMMKIVKENFPSERREVTKEEALEIFKNDPYKLELIQ
                     EHSDDEGGLTIYTQGEYVDLCRGPHVPSTGRIQIFELLNVAGAYWRGKSENPMMQRVY
                     GTAWFDKKDLKAYLQMREEAKERDHRKLGKELDLFMISQEVGQGLPFWLPNGATIRRT
                     LERYITDKELASGYQHVYTPPLASVELYKTSGHWEHYSEDMFPTMDMGDGEEFVLRPM
                     NCPHHIQVYKNHVRSYRELPVRIAELGMMHRYEKSGALTGLQRVREMTLNDGHIFVTP
                     EQIQEEFKKALQLIIDVYADFNLNDYRFRLSYRDPEDKEKYYDNDEMWENAQRMLKGA
                     MDEMGVDYFEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLDFLLPERFGLTYIGADG
                     EEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPTQVTMIPISVEAHLDYAWKVA
                     KELQDRGVRVHVDERNEKMQYKIRQSQTSKIPYQLIVGDKEMEDNAVNVRRYGSKATQ
                     TQSVAEFVDHILADIARKSRPAEAE"
     gene            complement(5579..6373)
                     /locus_tag="U1335_000426"
     CDS             complement(5579..6373)
                     /locus_tag="U1335_000426"
                     /inference="COORDINATES: protein motif:HMM:NF013884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HEM5230936.1"
                     /translation="MQIYAVFGSSIVISKILFSSYTVDKIQPSHLVSNFLLPDTSMWY
                     IWFLILMASATHILHRLQLTKPVSLICIGLFTLFAVLWGGPLNISNLPIGLQHLTSLP
                     LFYFLGIYFAKKGIHKKMVRQAVFHSLAGLVTIFYLIYLQSYQTYPSQHLPFHTFLRY
                     ANGLAMTYLIVSIIITLERRLPSIIAWFGQYSLYFYLVHTYILIIITLFIKKYFIDFS
                     TPLLLLISFGLLLIINTLALFIVKRIPILDKVFQGKVISYPKKKSS"
     gene            complement(6345..6620)
                     /locus_tag="U1335_000427"
     CDS             complement(6345..6620)
                     /locus_tag="U1335_000427"
                     /inference="COORDINATES: protein motif:HMM:NF013884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HEM5230937.1"
                     /translation="MKRLIYIDQLKGFGILAVLFLHTVGYIRNALPYTDIPLWRLEAW
                     LHSFLMPFFVFVSGFSFYHFYLKPKPRNNTYIYIYISTVANIRSLWQ"
     gene            complement(6743..7402)
                     /locus_tag="U1335_000428"
     CDS             complement(6743..7402)
                     /locus_tag="U1335_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5230938.1"
                     /translation="MNYVLELLKPSTFQLLWNGLKLTLYISSISVILSILFGMILAIM
                     RNGKNPIFKWIATIYIEFVRNVPNLLWIFTVFLVFQMKSTPAGITAFTIFTTAAMAEI
                     IRAGLNAIGPGQTEAGLSQGFTPVQIMVYIIMPQAIRKMLPAIISQIVTVIKDTSFLY
                     SVIALQELFGSSQILMGRYFEAEQVFALYLMVALIYFSINFAISSLSRYVAKSWASSI
                     E"
     gene            complement(7417..8115)
                     /locus_tag="U1335_000429"
     CDS             complement(7417..8115)
                     /locus_tag="U1335_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5230939.1"
                     /translation="MTVLTTSPYAWENWVSYFKDFPTFFQGFLFTLAISVGAFIMAMF
                     LGIVFGSLSSSKNKVLKIIARVYVEYYQNTPLLVQFMIVYYGLPLISNYVLMPSIYWT
                     AVICVGLYHGAYIAEVIRAGIEAVPTGQTEAALSQGFTQSETMRIIILPQAIPTILPP
                     LTNQVVNLIKNTATVAIISGADIMFMTKSWSAMNANYIPAFAGAAFLYFIMCFPVASW
                     GRRIEEKNKSAFSH"
     gene            complement(8130..8969)
                     /locus_tag="U1335_000430"
     CDS             complement(8130..8969)
                     /locus_tag="U1335_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEM5230940.1"
                     /translation="MDKKKINIFFAIRLLVFGLILLVFTKQPVAQTETPASITNSDQV
                     QAIIDRGVLRVGVKQDVPNFGYKNPDSGEFEGMEIDIARKIADELGVDIEFTPVTAQT
                     RGPLLDNGQVDMVIATFTITEERKLLYNFTTPYYTDAVGFLVNKDSGIKTFTDLDGKT
                     IGVAQGSITRTLISELADKYGISVNFAELGSYPELSVSLRAHRTDAFSVDQSILSGYI
                     SSKSELMDFSFSASDYGIVTKLSNKDLNDYLNSLVEKWTADGSLQSIYDANGLKPVTE
                     TDE"
     gene            complement(8980..9741)
                     /locus_tag="U1335_000431"
     CDS             complement(8980..9741)
                     /locus_tag="U1335_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5230941.1"
                     /translation="MALVEFKDVNKYYGDYHALRNINLEFEPGQVVVLLGPSGSGKST
                     LIRTINGLEAIDEGTLIVNGHDISSTSIKELVSLRKEVGMVFQHFNLYPHKTVLENVT
                     LAPIKVLGIDKATAEKTAQKYLEFVNLWDRKDSYPAMLSGGQKQRVAIARGLAMKPEL
                     LLFDEPTSALDPETIGDVLAVMQKLARDGMNMIVVTHEMGFAREVADRIIFMAEGEVL
                     VDTTDVNGFFDNPTEPRAQQFLSKIINHESDKVKL"
     gene            9935..10639
                     /locus_tag="U1335_000432"
     CDS             9935..10639
                     /locus_tag="U1335_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005589489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5230942.1"
                     /translation="MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAE
                     FPDIVILDLMLPELDGLEVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKP
                     FSNRELQARVKALLRRSELAETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELT
                     HREFELLHHLAKHLGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPE
                     YILTRRGVGYFIKGND"
     gene            10632..11981
                     /gene="vicK"
                     /locus_tag="U1335_000433"
     CDS             10632..11981
                     /gene="vicK"
                     /locus_tag="U1335_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall metabolism sensor histidine kinase
                     VicK"
                     /protein_id="HEM5230943.1"
                     /translation="MINQLRYLMTTAEFWFVVILIGFLIALTVLLIENYRDNKQIKQL
                     NQKVNALIEGNYADVLDMRGSPEITDMANSLNDLSEVIRLTHDNLEQEKTRLTSILSY
                     MSDGVIATDRIGRIIMINDMAQKQLGLSNPKQEQYHLLEVLDLSDRYTLRDLLAQTPE
                     IVIDHTNENEEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSH
                     ELRTPLTSVKSYLEALDEGALTESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVG
                     QIDVELINFTAFVTFILNRFDQMKNTDSDKVYTIVRDYQISPIWVEIDTDKMTQVLDN
                     ILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKADLPRIFDRFYRVDKARSR
                     AQGGTGLGLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWDDSDEEE"
     gene            11988..12791
                     /locus_tag="U1335_000434"
     CDS             11988..12791
                     /locus_tag="U1335_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016465920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM5230944.1"
                     /translation="MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLL
                     AEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMDIYANELTWQAMESKLGKIDVAQ
                     KHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMAGIV
                     ANADAYLIESNHDVEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIY
                     LGHLSKENNIKELAHMTMVNQLAQADLGVGVDFQVYDTSPDTATPLTKI"
     gene            13390..14706
                     /locus_tag="U1335_000435"
     CDS             13390..14706
                     /locus_tag="U1335_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM5230945.1"
                     /translation="MSLQAGQKVGLVGNNGVGKSTFLKILLGLDRDFAGQIEVKADWA
                     YVPQLQERSSLSGGEQVWKSIQEAFAQRPQLLIMDEPTANLDQEHQEKLIKQIKRYRG
                     SLLVVSHDRHFLNQIASHIWHLEEGSIQVYTGNYEAFVESRRARREGQQQAYEAYQKK
                     VAQLKKAQHERQAKAQKMGKRKKGVSSSEWKVNAMMGSYDSQAKSMAKSAKQLEKRIE
                     RLEKVSQPRKEAHIKMESKGALDTDLHRLFLLQAGQVFVDEVYLFDFPQLGMTFGDKL
                     ALVGSNGTGKTSFVRKLISKELEGYYNPKLKIAYFAQDLINLDEEKTALENVSCTSLQ
                     DRMTILNLLGMLGLSYDKAQQKVANLSGGERVRLSLAKVLLADANLLILDEPTNFLDM
                     AAIEALETFLKEYEGSVLLVSHDQQFVETSVHSQWEIVQACLVKKS"
     gene            14798..16870
                     /locus_tag="U1335_000436"
     CDS             14798..16870
                     /locus_tag="U1335_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEM5230946.1"
                     /translation="MKKRKNKPLEHDGNFISLRLNILFSIVIFLFLVLILRLADMQII
                     NHDFYSNKLSTASQKIISNGSIRGQIYDAQGKPLVENEIQQVVSFTRSNKMSAQEMKE
                     VANKLLQWVNVSNVTITQRDKADYHLADEEVYRQVVEALPEDKKYDSDGNYLSESTIY
                     SNAVDSIPAEALQYSEQDSKAIELFKQMNGATYFSTVNLVTDTLTAEQVAHIVANESQ
                     LPGISTTNNWQRTILPTSLSSIIGTVTSEQAGLPAEDAEYYLSKGYSSNDRVGTAYLE
                     KQYEEVLQGQREKKQINLDRNGNVESIETIQEGQQGNNIKLTIDLAFQDGVNAILKKY
                     FESELATGSALYSEGVYAVALEPSTGAVLAMSGYSHEKGAGSITEDALGTITSVFTPG
                     SIVKGATISSGWENGVISGNQVQLDEPIYFAGSAPITSWYGAYGSFNIDATEALEYSS
                     NVYMVKIALGLLGQTYSANMYLNDGDTLTNAMTKLRSTFAEYGLGAPTGIDLPLESTG
                     FLPEEYSTANFIMNAFGQFDNYTPMQMAQYVATVANNGKRISPHLVEGIYGNNPQGGL
                     GDLIETVSGKEMNQVNISADEMALLRQGFYQLVNGGGRFNTGSAIGRGAAVTISAKTG
                     TAETYTTTPSGEVVTAVNTNVVAYAPSDNPQIAVAVVLPNLTNENSTTKAITTEIINL
                     YNSLYPMN"
     gene            16879..17475
                     /gene="recR"
                     /locus_tag="U1335_000437"
     CDS             16879..17475
                     /gene="recR"
                     /locus_tag="U1335_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HEM5230947.1"
                     /translation="MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFA
                     KNLLAAKRDLSYCSICGNLTDQDPCAICQDSMRDQSTILIVEDSRDVTALENIQEYHG
                     LYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
                     KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL"
     gene            17558..18604
                     /locus_tag="U1335_000438"
     CDS             17558..18604
                     /locus_tag="U1335_000438"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEM5230948.1"
                     /translation="MSKETLILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFIS
                     QTGDFIKTQEFSQTPSADEKLMTNATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGS
                     IQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLESAGISQVPYVAVIEGENIDDKIAE
                     IEGKLIYPVFVKPANMGSSVGISKAEDLSGLRKALDLAFKYDSRVLVEQGVNAREIEV
                     GLLGNADVKTTLPGEVVKDVAFYDYDAKYIDNKITMEIPAKIDEAIMDTMRDNAAKAF
                     RAFGGCGLSRCDFFLTEDGDIFLNELNTMPGFTQWSMYPLLWDNMGLAYPDLIEELVR
                     LAKEMFEKRESHLI"
     gene            18706..19086
                     /locus_tag="U1335_000439"
     CDS             18706..19086
                     /locus_tag="U1335_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEM5230949.1"
                     /translation="MYQTTVKGEGLFQALSQGYGEPVRTFGVTEKGETPVSLVNIGLA
                     ACITMCVQGYYASQEGNKTMPVQVESRLDNQRFEVLIGIGESVSAQKQKEILSYVEKK
                     CKVKALLREDLQFETRFYVLESVE"
     gene            19088..20164
                     /locus_tag="U1335_000440"
     CDS             19088..20164
                     /locus_tag="U1335_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5230950.1"
                     /translation="MFLAIEEMRQNKLRYGLILGLLILISYLVFFLTGLAYGLMQENR
                     TAVDKWQADYVLLNSESNRLITASKIDTSLLDQVDASDKALIRQQAGVAYVDENATSD
                     EKEKVNIFAVEADSFIVPNIVEGRLYEKTGEVLVDKTLSEVEGFGLGDQIYLSGSDEK
                     VTIVGYTDNAYFGVAPVVYMDFTAFAELMQADKQQAATSNLASAIVVRGDVASLPDEL
                     EKVAIADFIENLPGYKAQNMTFGFMIGFLIVISAIVIGIFIFVLTTQKSPIFGLMKIQ
                     GLSNGYISGSVLAQTFLLAGVGTVLGLAGTYLSSLVLPSAVPFENNWTFYIVIGLALV
                     VFALLGASFSVGSIFKVDPLRNLS"
     gene            20174..20842
                     /locus_tag="U1335_000441"
     CDS             20174..20842
                     /locus_tag="U1335_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5230951.1"
                     /translation="MKTLIFENISKTFQDGSQTITALKLTNFSIEEGEFVAIIGPSGS
                     GKSTFLTLAGGLQTPTTGRVLINQSDYSDLPEKKRAKLRYKDIGFVLQASNLIPFLTV
                     EKQLTLVDKVNKKAEPSKRNELLSELGVDHLKNKFPKDLSGGERQRVAIARALYNDPA
                     LILADEPTASLDSNRAFEVVELLAKEAKERNKSIIMVTHDQRMIEKCDKVYEMKDGVL
                     TQVR"
     gene            20897..22258
                     /locus_tag="U1335_000442"
     CDS             20897..22258
                     /locus_tag="U1335_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000778684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEM5230952.1"
                     /translation="MKLTLHKVAQVLGAKNDISLYPDTALNKVEFDSRLITEGDLFVP
                     LKGARDGHDFIPVAFENGCAVTLSEASLDVPHILVEDCLAALQQLAAYYLEKTGVEVI
                     AVTGSNGKTTTKDMIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQ
                     DHLGDIHLLSEIAKPSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMTAGSKLLIPA
                     DPIADKLLPSHVDLIRFGEQADLQVTSLVESKDSLTFTVNFMDGDIFLPVTGKYNATN
                     AMVASYVGKTLGVPDEAIKSALASLNLTRNRTEWKKAANGADILSDVYNANPTAMRLI
                     LETFSSIPANEGGKKIAVLADMKELGSQSVDLHNQMILSLSPDVLDTVIFYGQDIEGL
                     AQLASQMFPIGKVYFFRKNAEQDQFEDLVKQVKEVLGGQDQILFKGSNSMNLGKVVEE
                     LEK"
     gene            22270..>22757
                     /locus_tag="U1335_000443"
     CDS             22270..>22757
                     /locus_tag="U1335_000443"
                     /inference="COORDINATES: protein motif:HMM:NF012257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM5230953.1"
                     /translation="MSILDELFQHEDIQPHLIYKEIKAKDYLLDEGQVSHMIYLVKSG
                     ALRLWHNNDGKDITIQFFFEGDSVSSLESFLTKTESIYSLQAIEETAVYCLNRQLFET
                     FLLEHPEYYHSLTILLSQKMIKYNHLFLSRIKNSPEQRFLELVQEKSDLLWRVPDIYL
                     SS"
BASE COUNT         6856 a         4150 c         5243 g         6508 t
ORIGIN      
        1 gtaatcatat atttgggatt atattcttta gtattggctt ttattgatac aaaaaataca
       61 gtttaaaata tgaaaaaatg taaaaaaggg ctataatggt attatgaaag tactattgta
      121 tttagaaggt aaaactgttt tagagaaatc aggaattggc cgggcgcttc aacaccagat
      181 ggaagcgcta gatatggcag gcattcctta tacgacagac ctgttgggag attacgatgt
      241 cattcatatc aatacctatg gtccacgctc ctggttattg ctacatgcag ccaaacggag
      301 tggaaaaaag gtaatcatgc atggacattc cacgaaggaa gattttcaaa attcctttat
      361 cggttcgaat accctagctc cttttgtagg aaaatatcta gcaagcatgt accaaaaggc
      421 agactttgtt atcactcctt cagagtattc aaaaaaactc atccagtctt acggtgtgac
      481 aacgccaatt atagccgttt cgaatggtat tgatttagat aaatataaga aggatgaacg
      541 taaggaagca gtctttcgag agcattttaa aattgaagaa ggtcagccag ttgttgtctg
      601 tgcaggactt tacttccgac gtaaaggaat tgaagacttt gtcaaggtag ccgaaaagat
      661 gccgcatgtc cgcttcattt ggctcggctc aatcaataag tggctgattc cgtcatatat
      721 tagaaaaatt gttgaggggg atcatccagc gaatgtcgag tttccaggtt attttaaagg
      781 tgctgttttt caaggtgcaa tgagcggagc ggatgccttt ttcttcccat cgtatgagga
      841 aacagaaggg attgttgttc tggaagctct tgctagtcat cagcatgttg ttctaagaga
      901 cattccagtt tacgatggtt ggattgacga aaacgttgcc gaattgggac atacagtgga
      961 tgattttgtc gattctattc agaaaatcct agacaagcag gttgataaac gtgaggcggg
     1021 ctaccaggtt gcggttagtc gctcgattga taatgtttcc caccaattgg tggatgccta
     1081 tcgacaagta ttggagatgt aaatgcggat tggattgttt acggatacct attttccaca
     1141 ggtttcagga gtcgcgactt cgattcggac tcttaagaca gagttggaga aattgggtca
     1201 tacggtattt atttttacga cgacagatga ggatgtgaat cgctacgaag attgggacat
     1261 tatccgaatt cctagcgtac ctttttttgc ctttaaagat cgtcgagtgg cctacgcagg
     1321 ttttacagat gccttaaaaa ttgcaagtcg ctataaacta gatattattc atactcatac
     1381 agaattttct ttggggattt tggggaaaat gattgccaag gaacttgata ttccggtggt
     1441 acatacttat cacacccagt atgaagacta cgtacactat attgccaagg gtaggattat
     1501 tcgtcccggg atggttaaat atttagtacg ggcattttta aaagatttgg atggggtaat
     1561 ttgtcctagt gagatcgttg aagatctttt aatgagttac aatgttccga tttctaaacg
     1621 agtaattccg acaggaattg acttggcaaa atttgataga ccagaaattg gcaaggatga
     1681 aacagatgag ttgcgagaac agctaggaat tgctagtgat gaaacgatgt tgttaagtct
     1741 gtctaggatt tctcacgaga agaatatcca agcaatcgtt caggcaatgc caaaaatttt
     1801 gctggaaaat ccaaaggtga agttggtcat tgtcggagga ggaccttata cagatgatct
     1861 tcaggaaatg atagcggagc ttaatctaga tgaacacgtc cagttgacgg gaatgattgc
     1921 accgagtgac acagcactct attacaaggc tgcggatttc ttcatttcag catcaaccag
     1981 tgaaacgcaa ggactaactt tcttagaaag cttagcttct ggaactccta ttttggcaca
     2041 tagcaatccc tacttaaaaa atgttataac agataagatg tttgggactc tcttcattcg
     2101 agaacaggag ttggcagatg ctgttgttga ggcgattgtt gctacgccac caatgaatcc
     2161 gtatgtgctt gataagaagc tctatgagat ttcttctacg aattttgggc gcaaggtttt
     2221 tgagtattat ctagatttga agatttcgta tgattttaga aaagaacata ctaatcaaga
     2281 tagcgtagca gaagcattga taaaagaggc tatttaccta ccgcaaaaag tagtagttaa
     2341 atcaacagac acgacagcaa aaatattgaa aaaatcagtc gaacaagtaa aatcaattcg
     2401 aaatttcttt gaataatttg gaggtttcaa atggaaaagc ttcggaaaga gagttggaag
     2461 aatctggttt tggcaactct tattattctg tccatgtatg caggtattta tctgattgcc
     2521 tttcatctga ttagtgacac catgctttct aaggtgctgg tggtcgggaa tatattgctc
     2581 tatactccca ttgtactatt cctaacaggt cttctttatg gattttttca cggcttttct
     2641 cctagccttc ttgccttagt tttattgctt tatcctgtaa ccatcttttt ctttaaggaa
     2701 tggattattc tctatcagat tgtctacacc ttatgtgctc tgattggaaa tgggatagga
     2761 gctctgctat tttacctaag aaagaaaagt aagaaaaatc cttgaaaaat caggaaatcc
     2821 tgttataata gcttttagag acttatcaat tctaggaaat ctttgagaga gtgtgcggtt
     2881 ggtgcaagca cacagaggat aggattgaca ctactcggta tgattttatg caaacataaa
     2941 agggtggttc ccttatcgcc aatctgaggt agtcaggctt ttttagcgtg actgcgaatg
     3001 aaggtggaac cacgttacga cgtccttttg cgagggcgtc gtattttctt ttttgacaaa
     3061 ataaggagat gaagttgacc agcattccac aagaaacgat tgaccgttgc ctagccattc
     3121 gcaaggctta cagagagttg gaagtcaagc accacgacaa agagtggtcc atcgaggagg
     3181 acctcttggc tttgaccaat gatattggca acatgaaccg tctgattatg accaagcagg
     3241 ggcgttacta tgatgaaacg ccttatacct tggagcataa aatggctgaa aatatctggt
     3301 ggttgattga actggctgac cgcctggata ttgatattca aaaagaaatg gaaacctttt
     3361 taactcaaaa agaagagtta ttggggatta aaaaataaaa atagaaagga ctagggtctc
     3421 cgtatttggt tgaactgaat acgggctacg gactgggcca aaaagataaa cgagaactag
     3481 acgcttgcgt cgtcgttctg tttcctattt tggctgtgtc cgcttaacgc cctttatatc
     3541 ttatattatg cttaaaatta ctttcccaga tggtgctgtt cgtgagtacc aggctggtgt
     3601 gacgactgtt gaaattgcgg agagtatcag caagtctttg gcgaaaaagg ctcttgctgg
     3661 taagttcaat ggtaaattga ttgacaccac tcgtgctatt gaagaggacg gtacgcttga
     3721 aatcgtaacg cctgaccacg aggatgcctt ggacatcttg cgtcactcag ctgcccactt
     3781 gtttgcccaa gcggctcgtc gccttttccc agatatcaag ttgggggttg gtccagctat
     3841 acaggacggt ttttactatg acacggacaa tgcggctggt cagatttcaa atgaagacct
     3901 gccacgcatt caggaagaaa tgatgaagat tgtcaaggaa aacttccctt cagaacgtcg
     3961 tgaggtgacc aaggaagaag ctctcgaaat cttcaaaaac gatccttaca agttggaatt
     4021 gattcaagaa cactcggatg acgagggcgg tttgaccatt tatacacaag gcgaatacgt
     4081 tgacctctgc cgtggtccac acgttccgtc aacaggccgt atccagattt ttgaattgct
     4141 caatgtggca ggtgcttact ggcgtggtaa gagtgaaaat cccatgatgc aacgggtcta
     4201 tggtacggct tggtttgaca agaaagacct caaggcttac cttcaaatgc gtgaggaagc
     4261 taaagaacgt gaccaccgta aacttggtaa ggaattagat ctcttcatga ttagccaaga
     4321 agttggtcaa ggtttgccat tctggttgcc aaatggtgca actatccgtc gtaccttgga
     4381 gcgttacatc acagacaagg aattggcttc tggttaccag cacgtttata cgccaccgtt
     4441 ggcttctgtt gaactctata agacttcggg tcactgggag cattattcag aagatatgtt
     4501 cccaactatg gacatgggtg acggtgaaga gtttgttctt cgtccgatga actgtccgca
     4561 ccacattcaa gtttacaaaa accatgtgcg ttcttaccgt gaattgccag tacgtatcgc
     4621 cgagcttggt atgatgcacc gctatgaaaa atctggcgca ttgactggtt tgcagcgtgt
     4681 acgtgagatg actctcaacg acggtcatat ctttgtgaca cctgagcaaa tccaagaaga
     4741 gttcaagaaa gctctccagt tgattatcga tgtgtacgca gatttcaacc taaacgacta
     4801 ccgtttccgc ctgtcttatc gtgatccaga ggataaagag aagtactacg acaacgatga
     4861 gatgtgggaa aatgcccagc ggatgctgaa gggcgctatg gatgaaatgg gcgtggacta
     4921 ctttgaggca gagggtgagg cggccttcta cggtccgaaa ttggatatcc aagtgaaaac
     4981 ggcccttggt aatgaagaaa ccctatcaac tattcagttg gatttcctct tgccagaacg
     5041 ctttggtttg acttatatcg gtgctgatgg cgaagagcac cgcccagtca tgattcaccg
     5101 tggcgttatc tcaaccatgg aacgcttcac agctatctta attgaaacct acaagggtgc
     5161 tttcccaacc tggttggctc caacccaagt gaccatgatt ccaatctctg tggaagctca
     5221 cttggattac gcttggaagg ttgctaaaga attgcaagac cgtggcgttc gcgtacacgt
     5281 agatgagcgg aacgagaaga tgcaatacaa gatccgtcag agccagacca gcaagattcc
     5341 ataccagctc atcgtcggtg ataaggaaat ggaagacaat gctgtcaacg ttcgtcgcta
     5401 cggaagtaag gcaacacaaa ctcagtctgt tgcagaattt gtggaccata tcctagcaga
     5461 tattgcccgc aaatcacgac cagctgaagc tgaataaata aagcaagaag tccgaaaggg
     5521 cttctttttt ggcagaaaaa aatcccaacc aactggctgg gagtgctagt atcacttatt
     5581 agctgctttt ctttttaggg taggaaatca ccttcccttg aaatacttta tccagtatag
     5641 gaatcctttt aacgataaac aaggctaggg tgttgatgat aagaagtaat ccaaaactta
     5701 tgagcagcag cagaggtgta gaaaaatcta taaaatattt ctttatgaaa agagtaataa
     5761 ttatcaggat gtaggtatgt accagataga agtaaagtga atactggcca aaccaagcta
     5821 taatagaggg taatcttctt tccagagtga taatgataga aacgatcagg taggtcatag
     5881 ctagtccgtt tgcatatcgt aggaaggtgt gaaatggcag gtgctgactt gggtaggttt
     5941 ggtaggactg taaatagatg agatagaaga tggtgaccag accggctaaa ctgtgaaaaa
     6001 cggcctgtct aaccattttc ttgtgaattc ctttcttggc aaaataaata cctaaaaaat
     6061 aaaatagtgg taaagaagtt aggtgttgta aaccgattgg taagttgcta atatttaagg
     6121 gaccacccca taggacagca aatagtgtaa aaagaccaat gcaaatcagt gaaactggtt
     6181 ttgttagttg caaccgatgg agaatatgag ttgcggaggc cataaggatt aaaaaccaaa
     6241 tataccacat agacgtatct ggcaggagaa aattagaaac gaggtgacta ggttgtattt
     6301 tatcaacagt gtaacttgaa aagaggattt tgctaattac aatactactg ccaaagactg
     6361 cgtatatttg caacagtcga tatatatata tatatataag tattatttct aggttttggt
     6421 tttaggtaaa aatgatagaa actaaagcca ctgacaaata caaaaaatgg cataaggaaa
     6481 gagtgtagcc aggcttctag tcgccaaaga gggatatcgg tatatggaag agcgtttcgg
     6541 atataaccga ctgtatgcag aaataagaca gctaaaattc caaaaccttt cagctggtca
     6601 atatagatga gtcgtttcat aagtttctcc tttatttaac tctaaactat ttgggaacag
     6661 aggcatttcc aaaatggttt gagtacattt tctttgatta tatcataaaa ccagctttct
     6721 cgagaaaact ggttcagatt gtttattcaa tactactcgc ccaagactta gctacataac
     6781 gtgacaggct tgaaatagcg aagttgatgc taaagtaaat caaggctacc atgagataga
     6841 gtgcaaaaac ttgttctgcc tcaaagtagc gtcccatgag gatttgacta gaaccaaaga
     6901 gttcttgcaa ggcgataacg gagtagagga aactagtgtc cttgatgacc gtcacaatct
     6961 gtgagatgat ggctggcaac atcttgcgaa tggcctgcgg catgatgata tagaccatga
     7021 tttgcactgg ggtaaaaccc tgtgacaaac cagcttcggt ctggcccggt ccgatggcgt
     7081 tgagaccagc acggataatc tcggccatgg ctgccgtggt aaaaatagta aaagcagtaa
     7141 taccagcagg cgtggacttc atttggaaga ctaagaaaac ggtgaaaatc cagagcaagt
     7201 ttggcacgtt acgaacaaac tcgatataga tagttgcaat ccacttgaaa attggatttt
     7261 ttccattgcg catgatggcg agaatcattc cgaaaagaat ggacaggatt accgaaatgc
     7321 ttgagatata gagtgttaac ttcaaaccat tccacaagag ttggaaggtt gaaggtttga
     7381 gtaattctaa aacataattc atcgttcaac ctccttttaa tgtgaaaagg cagacttatt
     7441 cttttcttca atgcgacgtc cccagcttgc aacagggaag cacatgatga agtaaaggaa
     7501 agcagcacca gcaaaggctg ggatgtagtt ggcattcatg gcagaccaag attttgtcat
     7561 aaacataata tcagctccag aaataatggc aacagtagcc gtattcttaa ttaagtttac
     7621 tacttggttg gtcaaaggtg gaagaatggt cggaatggcc tgtggtaaaa tgatgattcg
     7681 catggtttca gactgagtaa atccttgtga aagtgcggct tcagtttgcc cagtaggcac
     7741 agcctcaatc cctgcacgaa tgacctctgc gatataagca ccgtgataga gtccgacgca
     7801 gataacagct gtccagtaga tggacggcat gagaacatag tttgaaatca gtggaagtcc
     7861 ataataaaca atcatgaact gaaccaaaag cggcgtgttc tgatagtatt caacatagac
     7921 acgtgcgatg atttttaaaa ctttattttt acttgaagag agactaccaa agacaattcc
     7981 taaaaacatg gccatgataa aggcaccgac agaaatggct aaggtaaaga gaaaaccttg
     8041 gaaaaaggtt ggaaaatcct tgaaataact gacccaattc tcccaagcgt aaggactagt
     8101 tgttaaaact gtcatattgt ttcacctttc tattcgtcag tttctgtgac tggtttgagg
     8161 ccattggcat catagatgct ttgtaggcta ccatcggcag tccatttttc tacgagacta
     8221 tttaagtagt cgttaaggtc tttgttagat aatttagtaa caattccata atctgaggca
     8281 gagaagctaa aatccattag ttctgatttt gagctgatat acccagaaag gatagattgg
     8341 tctacagaaa atgcgtctgt acggtgagca cgtagcgaga cagagagttc tggataagaa
     8401 ccaagctctg caaaattgac agagatacca tatttgtctg ctagttcaga gatgagggta
     8461 cgtgtaatgg aaccctgagc tacaccgatt gtctttccat ccaggtcggt aaatgtctta
     8521 attccactat ccttattgac caagaagcca acggcatctg tgtagtaagg agttgtgaaa
     8581 ttgtagagca acttgcgttc ttcggttatg gtgaaggttg cgatgaccat atccacttga
     8641 ccgttatcaa gaagtggtcc gcgagtttgt gccgtaacgg gagtaaattc gatatccacc
     8701 cctaactcgt ctgcgatttt gcgagcaatg tcaatctcca ttccttcaaa ttcaccagaa
     8761 tctgggttct tgtagccaaa gtttgggacg tcctgtttca ctccgacgcg gagaacgcct
     8821 ctatcgatga tagcttgaac ttgatcacta ttggtaatgg atgcgggtgt ttctgtttga
     8881 gctactggtt gttttgtgaa aacgagaaga ataagtccga agaccaataa tctaattgca
     8941 aagaaaatgt tgattttttt cttatccata gacttcctcc tagagtttta ctttgtcaga
     9001 ttcgtggttg ataatcttgc tgaggaattg ttgggcacga ggctctgtcg gattgtcaaa
     9061 gaagccattc acatctgttg tatcaactaa aacttctccc tcagccatga agatgatgcg
     9121 atcagctact tcacgagcaa agcccatttc gtgtgttacg acaatcatgt tcatcccgtc
     9181 acgtgccaat ttttgcataa ctgcaagtac atcgccgata gtttctgggt ccaaggcaga
     9241 tgttggttca tcgaagagta gaagctcagg tttcatagct aagccgcgag cgatggcgac
     9301 acgttgtttt tggcctccgg atagcatagc agggtaggaa tccttccgat cccagaggtt
     9361 aacaaactca agatactttt gagcggtttt ttcagctgta gccttatcga ttcccaaaac
     9421 cttaatcggt gccaaagtaa cattttctaa cacggttttg tgtgggtaaa ggttgaaatg
     9481 ctgaaaaacc ataccaactt ctttgcgaag tgatacgagc tctttgatag aagtagagga
     9541 aatatcatgt ccgttgacga tgagcgttcc ttcatcaatt gcttctaaac cgttaatcgt
     9601 gcgaatgaga gtagattttc cggatccgga aggtccaagg agaacgacaa cctgtccagg
     9661 ttcgaattcc aagttgatat tgcgcagggc gtggtagtcg ccatagtatt tgttgacatc
     9721 tttaaattct actaaagcca taaaattctc cttgcatagt gttttttagg tattcccatc
     9781 ttagcattgc ctatatacaa tgtcaagtaa attctgacaa ttcaatgcgt cttgtgttac
     9841 aaaatatgac atggacgtgt cagatggttt tgaaatatga attttttagg taagtctgat
     9901 ataatagaag aaataaagca aaggtaagat actaatgaaa aaaatattaa ttgtagatga
     9961 tgaaaaacca atctcagata ttattaagtt taatatgact cgtgagggat atgaagttgt
    10021 gacagctttt gatggacgtg aagccttgga agtgtttgag gctgagtttc ctgacattgt
    10081 cattttggac ttgatgctgc cagaattgga cggactagag gttgctcgaa cgattcgtaa
    10141 gaccagcaat gttccaatct tgatgttatc tgctaaagat agcgaatttg ataaggttat
    10201 cgggcttgaa ataggggcgg atgattatgt gaccaaaccc ttctctaatc gcgaattgca
    10261 ggcgcgtgtt aaggctcttc ttcgtcgtag tgaattggca gagacgcaga caaatattga
    10321 gtcaacagga actccagagt tggtgattgg cgatttggtc attctgcctg atgcgtttgt
    10381 cgctaagaag catggcaaag agctggagct gacccatcgt gagtttgaat tgctccacca
    10441 tctggccaaa cacttaggtc aggttatgac tcgagaacat ctattggaaa cagtttgggg
    10501 ttatgattac tttggtgatg tccgcacggt ggatgtaacg attcgtcgtc tgcgtgagaa
    10561 aattgaagat acaccaagcc gaccagaata cattcttact cgtcgcggag tgggatattt
    10621 tataaaagga aatgattaat caattacgtt atttaatgac cacggcagaa ttttggtttg
    10681 ttgtcatttt gattggcttt ctaattgctc tgacggtcct tttgattgaa aactatcggg
    10741 ataataagca aattaaacaa ctcaatcaaa aggtcaatgc cttaattgag gggaattatg
    10801 ctgatgtgtt agacatgagg ggaagtcctg aaatcacaga catggcgaat tctcttaatg
    10861 atctgtccga ggttattcgc ttaactcatg ataatttaga acaagaaaag acgcgtctga
    10921 cgtccatcct gtcctatatg agtgacggtg ttattgctac agaccgtatc ggacggatta
    10981 tcatgattaa cgatatggcc cagaaacagt tggggttatc taacccaaag caggagcagt
    11041 atcacctgct agaggtttta gatttatcag accgttatac attaagagat ttgttggctc
    11101 agacacctga gattgtgatt gatcacacca atgaaaacga agaatttttg actttacgcg
    11161 ctaattttgc cacgattcgt agtgagagtg gtctgatttc tggcttggtt gtcgtcttgc
    11221 atgatatgac cgagcaggcc aaggaagaac gggaacgtag gctgtttgtg tcaaatgtga
    11281 gtcatgaatt gcgtacgcca ttgacttccg ttaaatccta tctagaggct ctggatgagg
    11341 gagcgctgac ggagtctgtt gcaccgagtt ttgttaaggt atccttagat gagaccaacc
    11401 gcatgatgcg gatgattaca gacctcctta gcttatcgcg tattgataat caagttggtc
    11461 agatagatgt tgaactgata aactttactg cttttgtgac ctttattctt aaccgttttg
    11521 accaaatgaa aaatactgat tctgataagg tctatacgat tgttcgtgac tatcaaatca
    11581 gtcctatttg ggttgagatt gatacagata agatgactca ggttttagat aatatcttaa
    11641 ataatgccat taaatattcg ccagatggcg ggacaattac cttcagcatg aagaccacag
    11701 atagccagtt gattgtatcc gtctcagacg aaggtctggg gattccgaaa gcagatttac
    11761 ctagaatttt tgaccgattt tatcgcgtag acaaggcacg atctcgtgcc caaggcggta
    11821 caggtcttgg tttagctatt gcaaaagaaa tcgtgaaaca gcataagggt tttatctggg
    11881 ctaaaagcga atatggtcat ggctcaacgt ttacaattgt cttgccgtac agcaaggaca
    11941 tcgcactaga tgagtgggat gattcagatg aggaagaata ggagaatatg atcggaaaag
    12001 gttttaatta tagtatttta gcttcgggat ccagcgggaa ttgtttttac ctagaaacag
    12061 ataaaaagaa aatcttagtg gatgctggct tatcagggaa aaagattacc agtcttttgg
    12121 cggaaattga tcgaaagcct gaggatattg atgctatcct ggtaacacat gaacatagcg
    12181 atcacatcca tggtatcggt gttttagcac gtaagtatgg catggacatt tatgccaatg
    12241 aattgacctg gcaggctatg gagagcaaat tgggcaagat tgatgtggct caaaaacata
    12301 tcttcgaatt gggtgctatg aagacttttg gcgacctaga tattgagtca tttggagtta
    12361 gtcatgatgc tgcatgcccg caattttacc gttttatgaa ggatgacaaa tcctttgtta
    12421 tgttgacgga tacaggctat gttagtgatc gaatggctgg gattgtggct aacgcagatg
    12481 cctatttgat tgagtctaat catgatgttg aaatcttgcg tgcgggttct tattcttgga
    12541 acctcaagca acggatttta tctgataagg ggcacctttg taatgaagat ggagctgacg
    12601 ccatgattcg ctcgttggga aatcggacca aaaagattta cctagggcat ttatcaaagg
    12661 aaaacaatat caaggaattg gctcacatga ccatggttaa tcagttggcg caggctgatt
    12721 taggagttgg agtggatttc caagtctatg acacatcgcc agatacagcg actcccttga
    12781 ccaagatttg acaaattcat tgaacttgtt tagaataaat atataaaata cgtgaggtga
    12841 agttacatga ataattaagc tacttattag tcgttcttaa aacttgttga aaatcaatta
    12901 tttgataatt tagtctttta ctttgctttt agtacttgct ccaacagtct aggaatagac
    12961 tgttggaggt cgtaaataga gcgaatgatg ttcgcaccaa aagctgcagg ctgcttgtac
    13021 agtcgagtga ctgtacaagg ttggagatag cacttgcgaa gcaagttact tctacatagt
    13081 acggcaaagc gagttcaaac aatccagtgg aatgtttgaa gttggaaata aggaaacgat
    13141 gtttcctctt acgtcgtagt aataaaagat aaactaaatg actacacaag ggataagact
    13201 gctcataagg gcttactatt catgtgactt tttccatagg gaaaggtcat gttttgcatg
    13261 gcttttttgc atgcactttt tgaagaatag aagccctttt tgtgaagaaa agaggtctat
    13321 atggaagtaa tgaaatgtat tcaattagag aaggaatttg cgggacgtag attgtttaca
    13381 atccagcagt tgagccttca agctggtcaa aaggttggtt tggttggaaa taacggtgtt
    13441 ggtaagtcta cttttttgaa aatcttactg ggactggata gggattttgc tggtcagatt
    13501 gaggtaaaag cagactgggc ctatgtaccc cagttacagg aaaggagctc gctttcaggt
    13561 ggggaacagg tttggaagtc tattcaagag gcttttgcac aaagaccaca gttgttaatc
    13621 atggatgaac cgactgccaa tctggatcaa gaacaccagg aaaagctaat caaacaaatc
    13681 aaacgctatc gaggtagtct actagttgtt agtcatgatc ggcattttct caatcaaata
    13741 gccagtcaca tttggcattt agaagaagga agtattcagg tctacacagg gaattacgag
    13801 gcgtttgtag aaagtcgccg ggctaggcga gaaggacagc agcaggccta tgaagcctat
    13861 cagaaaaaag tcgctcaact aaaaaaagcc caacatgaac gtcaggcaaa ggctcagaag
    13921 atggggaaga gaaagaaagg tgtttcatcg tctgagtgga aggttaatgc tatgatgggt
    13981 tcctatgata gtcaagccaa gtcaatggct aagtctgcta aacagttaga gaaaaggatt
    14041 gagaggttgg aaaaggttag tcagcccaga aaggaggctc atattaaaat ggaatcaaaa
    14101 ggggccttag atactgattt acatagacta tttcttttgc aagcaggtca agtttttgtg
    14161 gatgaagtgt atctatttga ttttcctcaa cttggcatga cttttgggga taaactagct
    14221 ttggttgggt caaatggtac tgggaaaaca agttttgtta ggaaattgat ttcaaaagaa
    14281 ttagaaggct attacaatcc aaaattaaaa attgcttatt ttgcacagga tttgataaac
    14341 cttgatgaag aaaagactgc tttagaaaat gttagttgta cttctcttca agataggatg
    14401 acgattctca atttattagg tatgttagga ctttcatacg ataaggctca gcagaaggta
    14461 gcaaatctgt ctggtggtga gcgtgttcgt ctctccttag ctaaggtatt gttggcggat
    14521 gccaatctct tgattttgga tgaaccgaca aattttctag atatggcagc tattgaggct
    14581 ttggaaacat tcttgaaaga atatgaaggt agtgtcctct tggtttccca tgatcaacag
    14641 tttgtggaaa catctgttca cagtcaatgg gagatagtgc aagcttgtct cgtgaagaaa
    14701 tcataaggaa atattttctg aaaaggaggc tctgtctaaa aaatattttt tgcctgtggt
    14761 ataataagaa agatatttct agaatgaggt ctttgaagtg aaaaaaagaa agaacaagcc
    14821 tttggaacac gatggaaatt ttatttccct tcgtttaaat attttatttt ctatcgtgat
    14881 tttccttttc ctagttttga tattgcgttt ggcagatatg cagatcatca atcatgattt
    14941 ttatagtaat aagctgtcta ctgccagtca gaaaatcatc agcaatggct ctatccgtgg
    15001 gcagatttac gatgcgcaag gaaaaccttt ggttgaaaac gagattcagc aggttgtctc
    15061 cttcacacgt tccaacaaga tgtctgctca ggaaatgaaa gaagtagcta ataaactctt
    15121 gcagtgggtc aatgtgtcga acgtaacaat tactcaacgt gacaaggctg attatcattt
    15181 ggcggatgaa gaagtttatc gtcaggtagt tgaggcctta ccagaagata aaaaatacga
    15241 ttctgatggc aactacctga gtgaatcgac aatttattct aatgcggttg atagtatccc
    15301 tgctgaagca ttgcaatatt ctgagcaaga cagcaaggcg attgagctat ttaagcagat
    15361 gaatggagct acttacttct ctactgttaa tttggtaaca gatactctaa ctgctgaaca
    15421 agttgctcat atcgtagcca atgaaagtca acttccaggc atttcaacga ctaacaactg
    15481 gcaacggacg attttaccaa cttccctcag ctctattatt ggtacagtaa cgagtgaaca
    15541 ggctggtttg cctgcggaag atgcggaata ctatctctcc aagggctact catcaaatga
    15601 ccgtgtggga actgcctacc tcgagaaaca atatgaagaa gtcttgcaag gtcaacgtga
    15661 gaaaaaacaa atcaacctag atcgaaatgg caatgtcgaa agtattgaga caatccaaga
    15721 aggacagcag ggaaataata ttaaactgac tattgattta gcctttcaag atggtgtcaa
    15781 tgctattttg aaaaaatact ttgaaagtga gctggctact ggtagtgcac tttactcgga
    15841 aggagtttat gcagtcgcat tggaaccttc aacaggtgcg gtgcttgcca tgtctggata
    15901 cagtcatgaa aaaggagcag gtagtataac agaagatgcc cttggtacta ttacaagtgt
    15961 tttcacacca ggttccatcg tcaaaggagc gacaatcagc tctggttggg aaaatggagt
    16021 tatcagtggc aatcaagtgc agttagacga accaatctat tttgcaggtt cagcaccaat
    16081 tacatcttgg tatggggcct atggtagttt taatattgat gcgacagagg ctctggaata
    16141 ttcttctaac gtctacatgg ttaagattgc tttgggacta cttggtcaga cctactcagc
    16201 taacatgtat ttgaatgatg gcgatacatt gacaaatgcg atgacaaaac ttcgttctac
    16261 ttttgcggaa tatggattag gtgctccaac aggaattgac ttaccacttg aatcaacagg
    16321 tttcttacca gaagaatatt ccaccgcaaa ctttattatg aatgcatttg gacagtttga
    16381 taactataca ccgatgcaga tggctcaata tgtagcgaca gtagcaaata atggaaaaag
    16441 gatttctcct catcttgtag aaggtatcta tggaaataat ccccaaggtg gattgggaga
    16501 tttgattgaa acagtttctg gtaaagagat gaatcaagtc aatatttcag ctgatgaaat
    16561 ggctctcctt cgtcaaggat tttatcaact tgtaaatggt ggaggacgat ttaatacagg
    16621 tagtgctatc ggtcgtggtg cggccgtgac catcagtgcc aagactggta ctgccgaaac
    16681 ttatactaca actccttcag gtgaagtagt aactgcagta aataccaacg ttgttgccta
    16741 tgcacctagt gataatccac aaatcgcagt tgcagtcgta cttccaaact tgactaacga
    16801 aaattctaca acaaaagcaa ttacaacaga aatcattaat ttatacaatt cactttaccc
    16861 aatgaactaa ggagaattat gttatatcct acacccatag ccaagttaat tgatagctat
    16921 tctaaattgc caggtatcgg tataaaaacg gctacccgtt tagcttttta tactattggc
    16981 atggaggatg atgtcgttaa tgagtttgca aaaaatttat tggcagccaa gcgagaccta
    17041 tcttattgct ctatttgtgg taatttgaca gatcaggacc cctgtgccat ttgccaggac
    17101 tcaatgcgag accaatctac tattttgatt gtagaggata gtcgagatgt tacagccttg
    17161 gaaaatattc aagaatacca tggtctttat catgtcttgc acggcttgat ttccccaatg
    17221 aatgggattg ggccagacga tattaatttg aaaaccctcc tcactcgcct gatggacaat
    17281 gaggttacag aagttattgt ggcgaccaat gcaacagcag atggggaggc tacatccatg
    17341 tatatctcac gtgtcctaaa gccagcggga attaaggtta cccgcttggc acgaggattg
    17401 gcagtcggaa gtgacatcga atacgcagat gaggttacgt tattgcgggc cattgagaac
    17461 agaacagaac tatagacttg aaaaccaaat tcagatgaca atttgaaaat ttatgctata
    17521 ctaaccatag taattttgaa ttagaaaagg aaaagatatg tcaaaagaaa ccttgatttt
    17581 actatacggt ggccgatcag cagagcgtga agtatccgtt ctgtctgccg aaagcgtcat
    17641 gcgtgccatc aattatgata aattttttgt caaaacctat ttcattagcc agacagggga
    17701 ctttattaag acgcaagagt tttctcaaac accgtctgcc gatgaaaaac tcatgacaaa
    17761 cgcgacaatt gttgaagagc aaaaaatccg tccgagcgat atttatgaag aaaaggcagt
    17821 tgttttccct gttcttcatg gaccaatggg tgaagacgga tctattcaag gcttcttgga
    17881 agtgcttcgt atgccttatg ttggcactaa tatcttgtct tcaagcgttg ctatggacaa
    17941 aatcactacc aagcgcgtac ttgaatcagc aggaatctcc caagtacctt atgtggcagt
    18001 tatcgagggt gaaaatatcg acgataagat tgcagagatt gaaggaaaat tgatttatcc
    18061 ggtctttgta aaaccagcta atatggggtc aagtgttgga atctcaaaag ctgaggattt
    18121 atctggcttg cgtaaggcgc ttgatctggc cttcaagtat gacagccgtg tccttgttga
    18181 gcagggtgtt aatgcgcgtg agattgaggt tggtcttttg ggaaatgctg acgtgaaaac
    18241 cacccttcct ggtgaagtag tcaaagacgt tgctttttat gactacgatg ccaaatacat
    18301 cgacaacaaa atcaccatgg aaatcccagc taagattgac gaggctatca tggacaccat
    18361 gcgtgataat gctgccaagg ctttccgtgc tttcggtggc tgtggtcttt ctcgctgtga
    18421 tttcttccta acagaagatg gagacatttt cttaaatgag ctcaatacca tgccaggctt
    18481 tacccagtgg tctatgtatc cactcctttg ggataatatg ggcctagctt acccagactt
    18541 gattgaagag cttgttcgtt tggctaagga aatgtttgaa aaacgggaaa gtcacttgat
    18601 ttaaaatgtt tggaaaaggt tggaaaattt ccaatctttt tctagttcac attcttgcaa
    18661 aggtttgcaa aaaggaataa aatggaacaa gttctggagg tgtttatgta tcaaacgaca
    18721 gtaaaagggg aaggtctgtt tcaagctctt tctcaaggtt atggcgaacc ggttcgtacc
    18781 tttggggtaa cggagaaggg tgagactccg gttagtctag ttaatattgg cttagctgcc
    18841 tgtatcacca tgtgtgtgca gggctactat gccagccaag aaggcaataa aaccatgcct
    18901 gttcaggtgg agagtcgctt ggacaatcag cgttttgagg tgttgattgg aattggtgag
    18961 tcggtttcag cgcagaagca gaaagagatt ctttcctatg tggaaaagaa atgtaaagtc
    19021 aaagctcttt tgagggaaga cttgcagttt gagacaagat tttatgtctt agaaagtgtg
    19081 gagtaagatg tttttagcaa tcgaagaaat gcgacagaac aaactgcgtt atggcttgat
    19141 tttaggatta ttaatcctga tttcctatct ggtctttttc ctgactggtt tggcttacgg
    19201 actcatgcag gaaaatagaa cagcagttga taaatggcag gcagactatg ttctgctcaa
    19261 ttcagaaagc aatcgcttga ttacagcatc aaaaattgat acgagcctgc ttgatcaggt
    19321 ggatgctagt gacaaggcct tgattcggca acaggcagga gttgcctatg tggatgaaaa
    19381 tgccacctca gacgaaaaag aaaaggtaaa catctttgcc gtagaggctg atagttttat
    19441 cgtcccaaat attgtagaag gtcgtttgta tgaaaaaacg ggagaagtcc ttgtggacaa
    19501 aaccttgtca gaggtagaag gttttgggct tggagatcaa atctatctat caggttctga
    19561 tgaaaaagtg accattgtag gttatacaga caatgcctac tttggagtgg cgcctgttgt
    19621 atatatggac tttacggcat ttgcagaatt gatgcaggct gataaacaac aagctgcaac
    19681 gagtaatctt gccagtgcca ttgttgttcg tggagatgtc gcttctctac cagatgagct
    19741 ggaaaaagtt gctattgcag actttattga aaatctgcca ggatataagg cacaaaatat
    19801 gacctttggc ttcatgatag gattcttgat tgtcatctca gccattgtta ttggtatttt
    19861 tatctttgtt ttgacaacac agaaatcacc gatttttggc ttgatgaaaa ttcaaggtct
    19921 ttcaaatggc tatatctcag gttcagtact ggctcaaaca ttcctacttg ctggtgtggg
    19981 aacagtcctt ggattggctg ggacttattt gtcatccctt gtcttgccaa gcgctgttcc
    20041 gtttgagaat aactggacct tctatattgt aatcggccta gcactagttg tatttgccct
    20101 attgggtgcc agtttctctg taggttctat ctttaaggta gatccattac gaaatctatc
    20161 ttaggaggtt gttatgaaaa cacttatttt tgaaaatatt agtaagactt tccaagatgg
    20221 cagccaaacc attacggctc ttaaactaac aaattttagc attgaagaag gcgaatttgt
    20281 tgccatcatt ggaccatctg gttctgggaa gtcaacattt ttgaccttgg caggtggttt
    20341 acaaacaccg acaactggtc gtgttttaat caatcaatcg gactattctg atttacctga
    20401 gaaaaaacgt gccaaattgc gctataagga cataggtttt gtcttgcagg cttccaattt
    20461 gatcccattt ttaacagtcg aaaaacaatt aaccttggtt gataaggtca ataagaaagc
    20521 tgaaccgagc aagcgaaacg aactcctatc tgaattgggt gtggaccatc tcaaaaacaa
    20581 gttccctaag gatttgtcag gcggagaacg tcagcgtgta gctattgccc gtgcacttta
    20641 taacgatcca gctttgattc tagctgatga accaacagcc agtttagaca gtaatcgcgc
    20701 ttttgaagtg gttgagttat tagctaagga agccaaagag cggaacaaat ccatcatcat
    20761 ggtaacgcat gaccagcgca tgattgaaaa atgcgacaag gtatatgaga tgaaagatgg
    20821 tgtcctcact caagttcgat aaaaagtggt ataattgaaa gagcgaaagc tcttttttag
    20881 tttattggag aaaacaatga aattaaccct acacaaagtc gctcaggtct tgggcgcaaa
    20941 aaatgatatt agtctttatc ctgatacagc actcaacaag gtcgagttcg acagtcgcct
    21001 gattacagaa ggggatcttt ttgttcccct caagggagcg cgtgacggtc atgactttat
    21061 tcctgttgct tttgaaaatg gctgcgcagt aaccctgtct gaagccagtc ttgatgttcc
    21121 tcacattcta gtagaagact gcttggctgc gcttcaacaa ttagcggcct actacctaga
    21181 gaaaacaggg gtggaagtca ttgctgtgac aggatcaaac ggtaaaacga ccaccaagga
    21241 catgattcac gatgttctgg cgacgactta caagacttac aagacacaag gcaactataa
    21301 caacgaaatt ggtctgcctt acaccgtcct ccatatgcct gacgatacag aaaaactggt
    21361 cttggaaatg ggccaagacc acttgggaga cattcatctc ctatctgaaa ttgccaaacc
    21421 aagtctgtcg gttattaccc tttttggaga agcgcatctg gaatttttcg gctcacgaga
    21481 agagattgct aaaggaaaat tacagattgc ggacggaatg acagcaggaa gtaaattgct
    21541 gattcctgca gatccgattg cggataagct cttgccgagc catgtagacc tcattcgctt
    21601 cggtgaacag gccgatttgc aggtgaccag tctggtcgag tcaaaagata gcctgacctt
    21661 caccgtcaat tttatggacg gcgacatttt cctcccagta acgggtaagt acaatgccac
    21721 caatgccatg gtagcaagct acgtaggtaa gaccttgggt gtgcctgatg aggccatcaa
    21781 gtcagcccta gccagtctta acttgacccg caaccgcacc gagtggaaga aggcagcaaa
    21841 cggagcagat attctcagcg atgtctacaa cgccaaccca acggccatgc gattgatttt
    21901 ggaaaccttc tctagcattc ctgcaaacga aggcggcaag aaaattgctg tgctagcaga
    21961 catgaaagaa ctgggtagcc agtccgttga cctccacaat cagatgattc taagcctgtc
    22021 gcctgatgtg ttggataccg ttattttcta tggtcaagat attgaaggtc tggcccagtt
    22081 ggctagtcag atgttcccga ttggaaaagt ctatttcttt aggaaaaatg cagagcagga
    22141 tcaatttgaa gatttggtga aacaagtcaa ggaagttctt ggcggccaag accaaatcct
    22201 ctttaaaggc tctaattcca tgaatcttgg gaaagtggtt gaagaattgg aaaaatagga
    22261 gaaatagaat tgtcaatcct agatgaattg tttcaacatg aagatattca accacattta
    22321 atatataaag aaataaaggc aaaagactat cttttagatg agggtcaagt ctcgcatatg
    22381 atttatcttg taaagtctgg tgcattgagg ctatggcata ataatgacgg aaaagacatt
    22441 actattcaat ttttctttga gggtgattca gtgtcatctc ttgaaagttt tttaacgaag
    22501 acagaaagta tttacagcct tcaagctatt gaagagactg cggtttattg cctaaatcgg
    22561 cagctatttg aaacattctt actagaacac ccagagtatt atcactcgtt gacaatactt
    22621 ttaagtcaga aaatgattaa atacaaccat ctttttctgt cacgaataaa aaactcacct
    22681 gagcaacgat ttttagaatt ggttcaagaa aaatctgacc tgttatggag agttccagat
    22741 atttatttat cttctta
//
LOCUS       DASGAC010000014        22740 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.014, whole genome shotgun sequence.
ACCESSION   DASGAC010000014 DASGAC010000000
VERSION     DASGAC010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 22740)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22740)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22740
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.014"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..6618)
                     /locus_tag="U1335_000444"
     CDS             complement(<1..6618)
                     /locus_tag="U1335_000444"
                     /inference="COORDINATES: protein
                     motif:HMM:NF018196.1,HMM:TIGR01168.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM5230954.1"
                     /translation="MHHSRRKSFDWYGLKQHFSIRKYHFGAASVLLGMSIALGTGTQV
                     VQAAETVTTPESTSVASSTSATESTTSETSTETATSSSSERTVEIGYIVKYATEDGTL
                     VNASVETVSVTTTETIAKATVSVTAVVPEGYELASGQSATVSQEVTENGVNIVTVKVV
                     KKAEEKAATSETTTTASTETATAKSTEDAATTTATVSEAVKTPATVEEAKVVLEQVTS
                     EAEVLANESERLVAASDKENTALTAAAAATKLIATEATAVFENSAATLEQVNAQINAV
                     RTSVEALALELRKYLGTDFIQVALTTTSTTTEASTTTTTTESLTSAPTTPEASKAQTA
                     ASTRTTPAQTATATQEPSQSTATTNTDTVAPTATVSIDTTAEADLAALNAIAEQKAVT
                     DKTAQDFSAALGTLSSRSDRSATLPDTPTITNMDNGNGIQGYWSEYATVLNKEEAAEA
                     ARLTPAPQVFPDGYIGDPTTGRMTFLILELSNSMDATQPANDYNAGSFNRRTGLNYYI
                     AFSVNRNSSDGTDTYAYLIDKTTNQIIDSKVLTTNGVGQEFDAILNATYIDPKSTGKF
                     KFTMLVTELEMKNHKTGETAITRSLNVAAGVGDGGDMSIVFNAMGSDRGEYTTFTGPA
                     PTFAPRQNTLYKVAGTAIRVEEELARYVQTSDLAGDNFTTSGEAVFADYELIEKPTIV
                     SGTLASSYVIGGAEIRYNPSTKAQKGIITTKTDGTSRLITYAINPDHPDFLANYEKYK
                     AMTRAEFVENAATILRLSERIDIIDAFAEQEKAINDDKSTTDDEKEAALSVLRKSTMA
                     QLNTVNDDFLITFVTKPIEPGGLNTENHAITGEAGYSYTSTKYKFQRRVRNSEGRQVV
                     EITDTIGYTLGPFSGEAKASLDPNSETSYMLADSDGNNINDANGQPINFSGARISLPN
                     SNLVNRNDQVYYYAEKGGVKVFYVDEDGNEIKDENLVTDHADTGSDYNLDTTEIKPEK
                     ITYKGEVYYYKEIDLTTSNLVPPSANTDSEKRAIVKIDEVTGTIAQDTLKELTYVYEK
                     AGNVNVNYVDTKGNAISSKVIDVENGKPGDTYSTTDQKRDKIETATGEVYYLVPKGTY
                     DVGTVGDDGNLTAIGNNTATGIDAVSGDIESNVTKEITYVYQQAGNVIVHYVTEDDTE
                     LSGTTDTGATTAATVNDTTNGKPGDTYDTKDLKPKTITTADGKTYALVEASTKGEETG
                     TVEAGKTKEVTYVYKEVKGNVVVNYVDTEGNPIAGTTDAGNVTESSVEHTPETSTGTD
                     YNTQNLRPNTITTTDGKIYKLVPAAIPANETGKVVEGTTTVTYVYELLQGDVIVHYVD
                     TEGNTIADDVTDTQITDTGTDYNTKEDHKPEKIVNDETGKVYYILPANEVKAGSAPEE
                     GKVVEGTSHVTYIYQEAGNVVVKYELEDGTQLKDPVKDVENGKPGDKNNPADDYTTTD
                     KIEEKITTADGKVYKRVPEKTKGNETGDVEAGEIIEVTYIYEEVKGNVVVEYYDTEGN
                     PISGTETENKTTVEDTPNSSVGTAYTTLDKKPAKITAADGTVYYYKEVKADSAAETGD
                     VVEGTTTVKYVYEKAGNVVVNYVTEGGTELSGITDKGTPTGSTVDFVKNGKPGTDYDT
                     NNLKPATIQTADGKTYKYKEVDSTKAQPTGQVEAGVTKEVTYIYQEVKGNVVVKYVDA
                     NGKPISGTADKGIDGKEKEVASEVEDTPLSSTTNTGNGYDTTDNRPETITTTDGTVYK
                     IVPAATQGNETGDIVEGTTTVTYVYVEVAKATGSVVVRYVEAGNESNVLKDPVLDENA
                     VVTGTKYDTTDEGDKPAEIVKDGVRYVLVPSKTTAVDPNGNPVTETGEVAEGTTVVTY
                     KYQKVANWIPQIPGVPEGQEPKVPYPFDPTNPDKPIDPTTPGTNGEVPVIPYVPGYTP
                     VDPKTNEPLKPVDPEDPNKGYVPPTPDETGVDTPIPYVQTGNVVVNYVTEDGTPIKKP
                     VKDETDAPAGKSYDTTDNKPVEIVTEDGSRYVLIPSKTVGSETGTVEGGKTAEITYVY
                     KKVANWIPQIPGVPEGEEPKVPYPFDPTTPDKPIDPTTPYPDGEVPSIPHVPGYTPVD
                     PKTNEPLKPVDPTDPSKGYVPPTPDETGVDTPIPYVQNGNVVVNYVDENGNVIKAPVK
                     DETDAPAGKSYDTTDNKPVELVTEDGSRYVLIPSKIVGSETGTVEGGKTTEITYVYKK
                     VANWIPQIPGVPAGEE"
     gene            complement(6939..7103)
                     /locus_tag="U1335_000445"
     CDS             complement(6939..7103)
                     /locus_tag="U1335_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230955.1"
                     /translation="MGDKPISFKDKDGNFVSAADVWNAEKLEELFNTLNPNRKLRLER
                     ERLARKSENE"
     gene            complement(7651..8964)
                     /gene="obgE"
                     /locus_tag="U1335_000446"
     CDS             complement(7651..8964)
                     /gene="obgE"
                     /locus_tag="U1335_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000061643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEM5230956.1"
                     /translation="MSMFLDTAKIKVKAGKGGDGMVAFRREKYVPNGGPWGGDGGRGG
                     DIVFVVDEGLRTLMDFRYNRRFKADDGEKGMTKGMHGRGAEDLIVRVPQGTTVRDADT
                     GKVITDLVENGQEFVIAHGGRGGRGNIRFATPKNPAPEISENGEPGEERNLELELKVL
                     ADVGLVGFPSVGKSTLLSVITAAKPKIGAYHFTTIVPNLGMVRTKSGESFAVADLPGL
                     IEGASQGVGLGTQFLRHIERTRVILHVLDMSASEGRDPYEDYVAINNELETYNLRLME
                     RPQIIVANKMDMPEAAENLEEFKKKLAANYDEFDELPQIFPISGIAHQGLENLLDATA
                     ELLEKTPEFLLYEESDFQEEEAYYGFNPDEPEFDISRADDASWVLSGDKLEKLFTMTN
                     FDRDESVMKFARQLRGMGVDEALRARGAKDGDTVRIGKFEFEFVD"
     gene            complement(9168..9296)
                     /locus_tag="U1335_000447"
     CDS             complement(9168..9296)
                     /locus_tag="U1335_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4044 domain-containing protein"
                     /protein_id="HEM5230957.1"
                     /translation="MAFGEEKHKKTTFEKVTLVIVVVMVVVTLAGLILPAINALMN"
     gene            complement(9468..9851)
                     /locus_tag="U1335_000448"
     CDS             complement(9468..9851)
                     /locus_tag="U1335_000448"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230958.1"
                     /translation="MQRYITHAVGLLFILCMLLPFAYTTDSESYSVFLVSGWRYFSQN
                     LFSLSSILIFLAFFFINYQANKNIQLIIFIMTFMVTLYFYCLPILALGEEFWSRIIEL
                     PVAYYICGLLMLVGVGLKVKRLVSG"
     gene            complement(10009..11778)
                     /gene="uvrC"
                     /locus_tag="U1335_000449"
     CDS             complement(10009..11778)
                     /gene="uvrC"
                     /locus_tag="U1335_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEM5230959.1"
                     /translation="MNDLIKHKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSY
                     FRGAHDTKTEALVSEIADFEFIVTDSNIEALLLEINLIQENKPRYNIMLKDDKSYPFI
                     KITKERHPRLIITRQIKKDGGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
                     YYHLGQCLAHGENLPSLSDYDKMAKEVAQFLTGHDDKIVKEVQDKMKAAASNLEFEKA
                     AEYRDVLQSISTLRTKQRVMAHDLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNL
                     FPYYNDADEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEALVDTKVIKPQRGEKK
                     QLINLATKNARVSLEQKFNLLEKNLEKTYGAVENIGQLLGIPTPVRIEAFDNSNIMGT
                     SPVSAMVVFENGVPNKKEYRKYKIKTVEGPDDYASMREVLQRRYSRVLRDGLTPPDLI
                     IIDGGQGQVNVAKQVIEQELGMSIPIAGLQKNDKHQTHELLFGNPLEVVELPRNSQEF
                     FLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSIGNIQSA
                     SLQEIAEVGVPYKVAELVKEKLK"
     gene            12019..12762
                     /locus_tag="U1335_000450"
     CDS             12019..12762
                     /locus_tag="U1335_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5230960.1"
                     /translation="MIQFDHITKTYGETIALDDLNLTIESGEIFGLIGHNGAGKTTTI
                     SLLTSIIEASYGTISVDGLNLEENRDEVKKRIAYVPDSPDIFLHLTAFEYWHFMGKVY
                     GVEKDTVDDRIAKLSSLFDMTARQHEPIDSFSHGMRQKTIIIGALIPNPDIWILDEPL
                     TGLDPQASFDLKQMMKEHAQSGHTVLFSTHVLSVAEQLCDRIAILRKGQLIFVGSLDE
                     LKSQYPDKDLETIYLELAGRQQVKAGEEV"
     gene            12759..14369
                     /locus_tag="U1335_000451"
     CDS             12759..14369
                     /locus_tag="U1335_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEM5230961.1"
                     /translation="MSKSIIWELVKINILYSNPQLLASVKKKQSKRKDASFSAYKSVL
                     LQQVFMVLSFGLLYSVFFMGVDYSQSIGFFSLQLALFTIIAIVYGFTGFFSVFYDSKD
                     TKLYLALPLKPQEVFLAKILSAQGMVLPFLMPCLSLLLITYWQIGGPLLALASIPSFL
                     ILWILVNLVNLIIMHFVGEVLTKSPRKTLISTILMTGSSLLAFAALMFLQSQQTVSLE
                     SGGFVDFPIIPIFAGFHYLVSHTISLETLLHFGLPFILMIGLIVFAFKTVIPNYFNQV
                     LAIENASTKRTNNAKSAKIPSNLNQALVKHHLSTLKDSNLMVQTMIQPIIMGVALFPS
                     FSRFTENGGLSSVGWDFFGIALLAGFLLGSLFAGSTTFIGVAMSLEKENYHFIRTLPI
                     SFKKFIIQKFWVLAAVQFALPTLLYFALALGFMKVKLILAVFFTVGIIISALLTGQIY
                     YWRDQRLLMLNWQNSNQLFGRGAGQWLIAGSIIGTMFLGIIILVVSIILAGTIGAAYV
                     SSALMTLLFVLSAALQLYIYKAYWQKLK"
     gene            complement(14392..14835)
                     /locus_tag="U1335_000452"
     CDS             complement(14392..14835)
                     /locus_tag="U1335_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5230962.1"
                     /translation="MLKAMEVYLVTNGNGLEAIEFYKNALGATVEQVNLFKDFLPDCP
                     AELENYVMNAQFRLNGQRFMLSDNNPEMPYTVGDNITVALITDDAETAQELYSKLSVD
                     ATAINMELQAVPWSPAYGNVTDKFGISWQINAEVEGYGQEYYAEN"
     gene            complement(14924..15679)
                     /locus_tag="U1335_000453"
     CDS             complement(14924..15679)
                     /locus_tag="U1335_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEM5230963.1"
                     /translation="MIMKRTILLCLPTILLLAACHQNTNQANTTKNSSTVVSTTSSQS
                     ASTTSEQSTSSSTSAETNQEVTSTETQVNFNGSYYSVQGKYGEVIIANKKHPLAADYA
                     PGENPEALAAFQRLIADMQALGFGVSNNYSGFRSYETQASLYQSYVNQEGQAAADRYS
                     ARAGYSEHQTGLAFDLLDTSGNLLEEPNASQWLATNAHLYGFIVRYLPGKESSTGYMA
                     ESWHVRYIGQEATDIYNSGLTLEEYFGVPGGDY"
     gene            complement(16336..17100)
                     /locus_tag="U1335_000454"
     CDS             complement(16336..17100)
                     /locus_tag="U1335_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5230964.1"
                     /translation="MNRLLRRIRPTKPLKELTWIDLFIITTILCGNAIYTSTMQWIAS
                     FSATETVETGVLSFSPADNWWALANQGKLFLFALVYLLIRNYDFKQLKVKLEWTVLLW
                     GPLIFIGAGLISDLAFTAFSYIPGLSGGYNYLGYLPYYDWNIMTVLNRFLAVDYSTVI
                     YSLFNGFYEEFFFLGLLLSTDKKKRSLVLLFSTIVRISFHTYQGMVSALVIGVAFGLF
                     YYYMYTRKNDNLLPYFLGHALADMVGTSFFSLFIAG"
     gene            complement(17179..17862)
                     /locus_tag="U1335_000455"
     CDS             complement(17179..17862)
                     /locus_tag="U1335_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjG family noncanonical pyrimidine
                     nucleotidase"
                     /protein_id="HEM5230965.1"
                     /translation="MQYKHLLFDLDHTLLDFSRGEEVALTQFLTAMEVEDIQAFKEVY
                     RPLNQGMWKDLEKGNITKKELINTRFSRTFAHFGRQVDGREMALRYQEFIGRQGQIFT
                     GADKLLQELTHRGYQIYAATNGVTYIQENRLLHSPIQSYFKEVFISEQMGTQKPAADF
                     YEKIAEQIAGFQFDQALMIGDSLTADIQGGNNAGMDTVWYNPTHMINNSKAVPTYTIH
                     SYQELLDLL"
     gene            complement(18178..18564)
                     /locus_tag="U1335_000456"
     CDS             complement(18178..18564)
                     /locus_tag="U1335_000456"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5230966.1"
                     /translation="MNLQVQFFQNDVIKAIKGGVYQISLQKDDGERRVLYIGESFSML
                     IRCAQHLYQLRKYPEYLGMTTETLRDQNPILMFGILELEEAMGIRRKKEKEYIKKYRP
                     LLQSGLSDRMLPISRKKEAVANFLEI"
     gene            complement(18567..20846)
                     /gene="pcrA"
                     /locus_tag="U1335_000457"
     CDS             complement(18567..20846)
                     /gene="pcrA"
                     /locus_tag="U1335_000457"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase PcrA"
                     /protein_id="HEM5230967.1"
                     /translation="MNPLLNGMNDRQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAYL
                     IDEKMVNPWNILAITFTNKAAREMKERAYALNPATQDCLIATFHSMCVRILRRDADHI
                     GYNRNFTIVDPGEQRSLMKRILKNLNLDPKKWSERSILGTISNAKNDLIDDKAFETQA
                     GDLYTQIVAKCYKAYQKELRQSEAVDFDDLIMLTLRLFDQNPEVLTYYQQKFQYIHVD
                     EYQDTNHAQYQLVKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKDYPESKVVL
                     LEENYRSTKTVLQAANEVIENNRNRRPKKLWTQNAQGDLITYYRARDENDEAIFVAGQ
                     IDQLYREGKAYKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISY
                     LNIIANPSDNISYERIVNEPKRGVGPGTVDKLRDFATSHSMSLLEASQDIMLSPIKGK
                     AAQAVFDLANLLYNLRNQLDNLTVTQVVEAVLNQTGYIDALAAQNTLEANARIENIQE
                     FLSVTKNFDEKDTEEEETGLDRLTRFLLDLALIADTDDGDTESSEVTLMTLHAAKGLE
                     FPVVFLIGMEENVFPLSRASEEEAELEEERRLAYVGITRAEQILYLTNANSRLLFGRT
                     NYNQPSRFIREISSDLLDYQGLARPANISFKASYINGRATQFGQGMSLQQAMQSRKAS
                     VQPSAKLGGSMPFASSNKSSSSGTNWSVGDIAVHKKWGRGTVLEVSGSGSNQELKINF
                     PEMGLKKVLASLAPISKEE"
     gene            complement(21345..22712)
                     /locus_tag="U1335_000458"
     CDS             complement(21345..22712)
                     /locus_tag="U1335_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019768617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEM5230968.1"
                     /translation="MAKIVVVGANHAGTAAIKTMLTNYGQENEIVVFDQNSNISFLGC
                     GMALWIGEQIGGPEGLFYSNKEELESLGATVYMESPVTNIDYDAKTVTALVNGQEHVE
                     SFEKLLFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIEKLKNKDI
                     NRVAVVGAGYIGVELAEAFQRKGKEVILIDVVDTCLAGYYDRDLSDLMAKNLEEHGIQ
                     LAFGETVKEVAGNGKVEKIITDKSEYDVDMVILAVGFRPNTAFAGEGIERFRNGAFLV
                     NKRQETSIPGVYAIGDCATIYDNATGDTSYIALASNAVRTGIVAAHNICGTDLEGIGV
                     QGSNGISIYGLNLVSTGLTLEKATRLGLNAAVTEVTDNQKPEFMEHGNFPVTIKIVYD
                     KDSRRILGAQMAACEDISLGIHLFSLAIQEGVTIEKLALTDLFFLPHFNKPYNYITVA
                     ALGAE"
BASE COUNT         5947 a         4987 c         4494 g         7312 t
ORIGIN      
        1 ttcttctcct gctggtacac ctggaatttg tggaatccag ttagcgactt tcttatacac
       61 ataagtgatt tctgttgtct taccaccttc aactgtacct gtttcagaac caactatctt
      121 agatgggatc aagacataac gtgaaccatc ttctgtaaca agctcaactg gcttgttgtc
      181 agttgtgtca taagacttac ctgctggagc atctgtttcg tctttaacag gtgccttaat
      241 cacattgccg ttttcatcca catagtttac cacaacgtta ccattttgaa cgtaagggat
      301 tggtgtgtca acaccagttt cgtctggtgt tggtggaaca taacccttgc ttggatctgt
      361 tggatcaact ggcttcagtg gctcgtttgt cttaggatct actggtgtgt agcctggaac
      421 atgtggaatg gatggaactt caccatctgg gtaaggtgtt gttggatcaa ttggcttatc
      481 tggggtagtt ggatcgaatg gatatggaac ttttggttct tctccttctg gtacacctgg
      541 aatttgtggg atccagttag cgactttctt atacacataa gtgatttcag ctgtcttacc
      601 accttcaact gtacctgttt cagaaccaac tgtcttcgat gggatcaaga cataacgtga
      661 accatcttct gtaacaatct caactggctt gttatcagtt gtgtcataag acttgcctgc
      721 tggagcatct gtttcgtctt taacaggttt cttaattggt gtaccatctt cagtcacata
      781 gttcaccaca acgttaccag tttgaacgta agggattggt gtgtcaacgc cagtttcgtc
      841 tggtgttggt ggtacatagc ccttgtttgg atcttctgga tcaactggtt tcaatggctc
      901 atttgtctta ggatctactg gtgtatagcc tggtacgtaa ggaattactg gaacctcacc
      961 atttgttcct ggtgttgttg gatcaattgg tttgtcagga tttgttgggt caaatggata
     1021 tggaactttt ggttcttgtc cttctggtac acctggaatt tgtgggatcc agttagcgac
     1081 tttctggtac ttgtaggtta ctacagttgt accttcagca acttcacctg tttcagtaac
     1141 tgggttacca tttggatcta cagcagttgt cttagatgga accaatacat aacgaacgcc
     1201 gtctttcacg atttcagctg gcttgtcgcc ttcgtcagtc gtatcgtact tagtacctgt
     1261 tacaacagca ttctcatcaa gaactggatc tttcagaacg ttagattcgt tacccgcttc
     1321 tacataacgt actactactg atcccgtagc tttagcaact tctacatata cataagttac
     1381 cgtcgttgtt ccttctacga tatctcccgt ttcgttaccc tgtgttgctg caggaactat
     1441 tttgtacact gttccatccg ttgttgtgat tgtttctgga cggttgtctg ttgtgtcgta
     1501 gccgttacct gtgtttgttg ttgatgatag cggtgtatct tctacttcac ttgctacttc
     1561 tttttctttt ccgtcaatac ctttgtcagc tgttcctgag attggttttc catttgcgtc
     1621 tacatatttt actactacat ttcctttaac ttcttggtaa atatatgtta cttcttttgt
     1681 tactcctgct tccacttgac ctgttggttg tgctttagtc gagtctactt ctttgtactt
     1741 gtaagttttt ccatctgctg tttggattgt agctggtttc agattgtttg tatcgtaatc
     1801 cgttcctggt ttaccatttt taacgaaatc tactgtactt cctgtaggtg ttcctttatc
     1861 tgttattccc gataattctg ttccaccttc tgttacatag ttaactacta catttcctgc
     1921 tttttcgtat acgtacttaa ctgttgttgt tccttctact acatctcctg tttctgctgc
     1981 tgagtcagct ttcacttctt tgtagtagta tactgttccg tctgctgctg tgatcttagc
     2041 tggtttcttg tctagtgttg tgtacgctgt tcctactgaa ctgtttggtg tatcttccac
     2101 agttgttttg ttttctgttt ctgttcctga aattggattt ccttctgtat catagtattc
     2161 tactactaca tttcctttta cttcttcgta gatgtatgtt acttcgatta tttctccagc
     2221 ttctacatca cctgtttcgt taccttttgt tttctccggt actcgtttgt atacttttcc
     2281 gtctgctgtt gtgatttttt cttctatttt atccgttgtt gtgtagtcat ctgctgggtt
     2341 atttttatct ccaggttttc cattttctac atctttcacc ggatctttta attgtgttcc
     2401 atcttctagt tcgtatttaa ctactacatt tcctgcttct tgatagatgt atgttacgtg
     2461 actagttcct tctactactt ttccttcttc tggtgcagat cctgctttaa cttcgtttgc
     2521 tggtaggatg tagtatactt ttcctgtttc gtcgtttacg attttctctg gtttgtggtc
     2581 ttctttggtg ttgtagtctg taccagtatc agtgatttgt gtatctgtta catcgtctgc
     2641 aattgtgtta ccttctgtat cgacgtaatg tacgataaca tcaccttgaa gtaactcata
     2701 gacataagtt acggttgtag tgccttcgac aactttaccc gtttcgtttg ctgggatagc
     2761 tgctggaacg agtttgtaaa tcttaccatc tgttgtggtg atggtgtttg gacggaggtt
     2821 ttgggtattg tagtcggtac ctgttgatgt ctctggtgtg tgttctacgc tgctttctgt
     2881 gacgtttcct gcgtctgttg taccagcgat tgggttacct tcggtatcaa cgtaattcac
     2941 cacaacgtta cctttgactt ctttgtagac gtaagtaact tccttagtct tacctgcttc
     3001 aacggtacct gtttcctcac ctttagttga tgcttcgact agcgcatagg tcttaccatc
     3061 tgctgtggtg atggtttttg gcttgaggtc tttggtgtca taagtatcac ctggtttacc
     3121 gtttgtcgta tcatttacag tagctgctgt agtggcacct gtatcagtgg ttcctgaaag
     3181 ttctgtgtcg tcttcagtaa cgtagtgaac gataacgtta cctgcttgtt ggtaaacgta
     3241 ggtgatttct ttggtcacgt tgctttcgat gtcgcctgag acagcatcga tacctgttgc
     3301 agtgttgtta ccgatagctg tcaagttacc gtcatcaccg actgtaccaa catcataagt
     3361 ccccttagga acgaggtagt acacctcacc agtagcggtt tcaatcttat cacgtttttg
     3421 gtcagttgtg ctgtaggtat ctcctggctt accgttttca acatcgatga ctttgctact
     3481 gatggcatta cctttagtat ctacatagtt aacgtttacg ttaccagctt tttcatagac
     3541 ataggtcaac tctttaaggg tgtcttgtgc gatggtacct gtgacctcat cgatcttcac
     3601 gatcgcacgt ttttcactat cagtgtttgc tgatggtggg accaggttgc tggttgtaag
     3661 gtcgatctct ttgtagtagt aaacctcacc cttataggta atcttttctg gtttgatctc
     3721 tgtcgtatct aggttatagt ctgaccctgt atcggcatgg tcagtcacaa ggttttcatc
     3781 cttgatctcg ttaccatcct catcaacgta gaatacctta accccacctt tttcagcgta
     3841 gtagtaaact tggtcgtttc ggttaactag gttagagttg ggaagtgaga tcctagcccc
     3901 tgagaagttg atcggttgtc catttgcatc gttgatgttg ttgccatcac tatcagccaa
     3961 catgtaactt gtttctgaat ttggatcaag gctggctttc gcctcaccac taaacggtcc
     4021 taaagtataa ccaatggtat ccgttatctc aacaacttga cgtccttcag agttacggac
     4081 ccgtctttgg aacttgtatt tggttgatgt gtagctatag cctgcttcac ctgtaatggc
     4141 gtggttttca gtgtttaaac cgcctggctc aatcggtttt gtaacgaagg taatcaagaa
     4201 atcatcgtta acggtgttga gttgagccat tgtcgactta cgtaaaacgc tgagcgctgc
     4261 ttctttttca tcatctgtag tcgacttatc atcgttaatc gctttttcct gctctgcaaa
     4321 ggcatcgatg atatcaatac gttctgacaa acgtaggatg gtagcagcat tttctacaaa
     4381 ctctgctcgt gtcatcgcct tatacttttc atagttagct aggaagtctg ggtggtcagg
     4441 gttaatcgca taagttatga gacgagatgt cccgtctgtt tttgtggtga tgatcccttt
     4501 ttgtgcctta gtgctagggt tataacgtat ctctgcacca ccgataacat aggaactcgc
     4561 caaggtccct gagacaatcg ttggtttttc tatcaactca tagtcagcaa agaccgcttc
     4621 accagatgtg gtaaagttat cacctgcaag gtcagaggtc tggacatagc gagccagttc
     4681 ttcttcaaca cgaatcgctg tccctgctac cttatacagc gtgttttggc gtggggcaaa
     4741 ggttggtgcg ggtcctgtga atgtggtata ctcccctcta tctgatccca tggcgttaaa
     4801 gacgattgac atatccccgc catcaccaac accagcagct acatttagcg agcgtgtgat
     4861 tgccgtttca cctgtcttat ggtttttcat ttcaagctcg gtgacaagca tggtgaattt
     4921 gaattttcct gtagattttg gatctatata ggtagcgttt agaatagcat caaattcttg
     4981 accaacacca tttgtcgtta gcaccttgct gtcgataatc tggttggttg ttttatcgat
     5041 caggtaagcg taggtatctg taccgtctga tgagttacgg ttaacagaaa aagcgatata
     5101 gtagtttagt cctgtgcgtc gattgaaaga accagcattg taatcattag caggttgcgt
     5161 agcatccatc gagttagaca gttccaaaat caaaaaggtc atacgacctg ttgtcggatc
     5221 tccgatatag ccatctggga agacctgtgg tgctggtgtc agacgagcgg cttctgcggc
     5281 ttcttctttg tttagaacag ttgcatactc tgaccagtaa ccttggatac cgttaccgtt
     5341 atccatgttt gtgatagttg gtgtatcagg gagtgtcgcg cttctatcag agcgtgagct
     5401 tagggttcct agcgctgcgc tgaagtcttg cgccgtctta tctgtcactg ctttttgctc
     5461 agcgatagcg tttagcgcag ccaggtcagc ttctgctgtt gtgtcgatgc taactgttgc
     5521 tgttggcgct acggtatctg tgttagtcgt agctgtgctt tggctaggct cttgtgtcgc
     5581 tgtagccgtt tgcgctggtg ttgtgcgcgt tgacgcagct gtttgggctt tgctagcttc
     5641 tggtgttgtc ggtgcagaag tgagcgattc tgttgttgtc gttgttgtgc tagcttctgt
     5701 tgttgtcgac gttgttgtca aagcaacttg gatgaaatct gttcccaagt acttacgtaa
     5761 ttccaaagca agtgcttcga cacttgtacg aactgcattg atttgagcgt ttacttgctc
     5821 aagtgttgct gctgagtttt caaaaactgc cgttgcttct gttgctatta atttagtcgc
     5881 tgctgcagct gctgtcaagg ctgtattttc cttatcagat gcagctacaa ggcgttcaga
     5941 ttcattagcc aatacttctg cttctgaagt tacttgctca agaactactt ttgcttcttc
     6001 tacagtagca ggtgttttta cagcttcaga aactgttgca gttgttgtag ctgcgtcttc
     6061 tgttgattta gcagttgctg tttctgttga agctgttgta gtagtttcag aagttgccgc
     6121 tttttcttca gctttcttca caactttaac agtaacaata tttacaccgt tttcggtcac
     6181 ttcctgagaa actgtagctg actgacctga tgctaattca tatccttctg gtactactgc
     6241 tgtgacagat accgttgctt ttgcaattgt ttctgtggta gtaactgaaa ctgtttctac
     6301 tgaagcgttc acaagtgtac catcttcagt agcgtactta acaatataac cgatttcaac
     6361 tgtacgttca gaacttgatg aagtcgctgt ttctgttgaa gtttctgatg tcgttgattc
     6421 tgtagcactt gtggatgaag ctacggacgt agactctgga gttgtaactg tctctgcagc
     6481 ttgaacaacc tgtgtcccag taccaagtgc aatcgacatc ccaagtaaga cactagcagc
     6541 accaaagtgg tatttacgaa ttgagaagtg ctgtttcaat ccgtaccagt caaaagattt
     6601 tcttctagaa tgatgcatta ttatcctcct gtattctatg catagctaaa aataagatag
     6661 gtaactaaaa atgctttcag attacatctc cctcatttta ctattagcta gctattttta
     6721 gattctataa gcattatacc ctaccccccc cagattttca agtaaaatca tccattttcc
     6781 gcaacatacg cgaaaagacg catgtaactt ttttctagtt gcatgcccat tctgatattg
     6841 tggattggtt acctacaggt caatggtcct gacgcgagtc ctgtttttta aattcttaat
     6901 aaaaacctgc tagtcttttg aaactaacag atctctaatt attcattttc cgattttctt
     6961 gccaaacgct ccctctccaa acgtaatttc cgattaggat taagtgtatt aaaaagttct
     7021 tctaatttct cagcattcca aacatccgca gctgagacaa aatttccatc cttatccttg
     7081 aaggatattg gtttatcgcc catataaacc tccaactatt ttatagacta tttacaaacg
     7141 atcattaact gaatgaaatt agtaaggtag ctagccaagg tcccatagga cttggcgtag
     7201 tttgactagc aagttaactt gcagtcaaac tgcttacctc gctctcgaat ttcttagctc
     7261 gggttaaaac tgtcccccga acatggtcgc tttcgtattt caaggcaacc agctgaaaaa
     7321 gttctgcaaa ctgtttcact ccactggaca ggctacgaca tggagtacag gcagtcgata
     7381 ccactgcctg tgcggaatta gtaaggttgg taggtagtcc gccataacgg ctaccgtatc
     7441 acatcaagtc ctttaggatt tagatgcgat tccaaagtta cgacacggag cccaaatggt
     7501 cgatactacc atttgggtga agttagtaag gtagctagcc aaggtcccct aggacttggc
     7561 gtagtttgac tagcaagtta acttgcagtc aaactgctta cctcactctc gaatttttag
     7621 gctcgggtta aaactgtccc ccggacagtt ttaatccaca aactcaaatt cgaacttgcc
     7681 gatacggaca gtgtctccat ctttggctcc gcgggcacgg agggcttcat cgacgcccat
     7741 gccacgcaac tggcgagcaa atttcatgac agattcgtca cgatcaaagt tagtcatggt
     7801 gaagagtttt tctagtttgt caccagatag aacccagctt gcatcgtctg cacggctgat
     7861 gtcaaattct ggctcatctg ggttaaagcc atagtaagcc tcttcttctt ggaaatctga
     7921 ttcctcgtag agcaagaatt caggcgtttt ctctagcaac tcagctgtgg catccaaaag
     7981 attttccaaa ccttggtgag caatccctga gattgggaaa atctgtggca gttcgtcaaa
     8041 ttcatcatag ttggctgcca attttttctt aaattcttcc agattttctg ccgcttctgg
     8101 catatccatt ttgttggcaa cgataatctg aggacgctcc atgaggcgaa gattgtaggt
     8161 ttccaattca ttgttgatgg ctacgtaatc ttcataagga tcacgaccct cacttgctga
     8221 catgtccaaa acatgcaaga taacacgtgt ccgctcgatg tgacgaagga attgcgttcc
     8281 caatccaaca ccttgactag caccctcaat caaacctggt aagtctgcca cagcaaatga
     8341 ctcgccagat ttggtccgaa ccattcccaa atttggcaca atggttgtaa aatggtaggc
     8401 accaatttta ggtttagctg ctgtaataac actgagaagc gttgattttc caactgatgg
     8461 gaaacctaca agacctacat cagccaacac tttcaattct aattcaagat tgcgctcctc
     8521 acctggttct ccattttcag aaatctcagg cgctggattc ttaggtgtcg caaaacgaat
     8581 atttccacga ccaccacgac caccgtgagc aatgacaaat tcttgaccat tttcaaccaa
     8641 gtcggtgatg accttgccag tatccgcatc acgaacagtt gtcccctgtg gtactcgaac
     8701 aatcaggtct tccgcaccac gaccgtgcat acctttggtc ataccttttt cgccatcgtc
     8761 agctttaaaa cgacggttgt atcggaagtc catgagagta cgcaagccct catctacaac
     8821 aaaaacaatg tctccgccac ggccaccatc accgccccaa ggaccgccat taggtacata
     8881 cttttcacgg cggaaggcga ccatcccatc gcctccctta cctgccttga ccttaatctt
     8941 ggcggtatct aaaaacatac tcataattta ccctattctt tcctagaaaa aaacgcttaa
     9001 aagcgttttg gacctgtatt cacaagcgaa gtgcttatat ataagaaatc gtttttagcc
     9061 aatcaaggta gttttttcag aatactgact gtattttgaa aaaaactaac gatgagtgct
     9121 taaaaactag ccttagtata gaagtgctga acagtgaata cagattctta attcatcaat
     9181 gcattaatgg ctggtaaaat caagccagct aatgtcacga caaccatcac gacaacaatt
     9241 actaaagtta ctttttcaaa tgttgttttc ttgtgttttt cttcgccgaa cgccattgct
     9301 ttctccttaa tcagtcattg ataattcatt ttaccataaa ttagtagagc tttcaaatct
     9361 catctctacc taccagaaga caagatttac cagattatct taaaaggact gctttccagc
     9421 ttctgactag aaagacagtc ctcgtgcttt tcagaaatat taggcaatta accagatacc
     9481 aaacgtttta cttttaatcc aactccaaca agcataagta aaccacaaat gtaataagca
     9541 acaggcaatt cgattatacg actccagaat tcttctccta aagccagaat aggtaagcaa
     9601 taaaaataca atgtaaccat aaaagtcatg ataaaaataa tcagctgaat atttttatta
     9661 gcttgataat taatgaaaaa gaaagctaaa aagattagaa tagaggacaa ggaaaataag
     9721 ttttggctga aataccgcca acctgacaca aggaaaacag aataactttc actgtccgta
     9781 gtatatgcaa acggcagtag catacacaat atgaacaata gtccaactgc atgtgtgata
     9841 tatctttgca tagcctttac ctccccctct atttgatggc atcattttat tagtaacaaa
     9901 ttgtagctta tcaagtactt gatatatatt ataatatata ttgataagat tgtaaagcat
     9961 tttggtgtat ttttataaga tttttggata ttattacacc gtttggtttt acttcaactt
    10021 ctccttgacc aactccgcca ccttatacgg cacacctact tctgcgattt cttgtagact
    10081 ggccgactgg atattgccaa tggacttgaa atgcttcatc aaagcctgct tgcgttttgg
    10141 tcccaaacct tctatgccat ccaatttaga tgagaaggaa ttttttgacc gaacctgacg
    10201 gtgaaactca atagcaaagc ggtgaacctc atcttgaatc cgatgcagga ggaaaaattc
    10261 ctgcgaattg cgaggcaact caactacttc cagcggatta ccaaagagca attcgtgtgt
    10321 ctggtgcttg tcattcttct gcaaacctgc aatgggaatg gacataccca actcctgctc
    10381 gatgacctgc ttggcgacat ttacctgacc ctgaccacca tcgataataa tcaaatcagg
    10441 cggtgtcaaa ccatctcgca agacccgact ataacggcgt tgcagcactt cacgcataga
    10501 agcgtaatca tctggcccct ccaccgtctt aatcttgtac ttgcggtatt cctttttatt
    10561 aggcacccca ttttcaaaga ccaccatagc cgacacagga ctagtcccca tgatgttgga
    10621 gttgtcaaag gcctcaatcc gcacaggcgt cggaatcccc aaaagctgac cgatattctc
    10681 caccgcaccg taggtcttct ccagattttt ctccaaaaga ttaaacttct gctccagact
    10741 aacacgcgca ttcttggttg ctagattgat gagctgcttc ttctcgccac gctggggctt
    10801 gatgaccttg gtatctacca gagcttctac ggcttcttgg tcaatatcct gcggtatcaa
    10861 gacctctgag ggaatcaaat gttgctggtc cctgtaaaac tgaccgatgt aggtcaaaaa
    10921 gtcttcgtcc gcatcattat agtaaggaaa gagattgaca ttccgctcaa tcagtttccc
    10981 ctgccgaaca aagaaaacct gcacacacat ccagcccttg tccacgtagt agccaaagac
    11041 atcgcggttt tgcaagtcat gagccatcac acgttgcttg gtccgtaggg ttgaaatgga
    11101 ttggaggaca tcacgatatt ccgcagcctt ttcaaattcc agattagaag cagctgcctt
    11161 catcttgtcc tgaacttcct tgacaatctt atcatcatgc cccgtcaaga actgggcaac
    11221 ttccttggcc atcttgtcat agtcagacag gctgggcaag ttttccccgt gagccagaca
    11281 ttgccccaaa tgataataaa gacaatactt gttctcaggc aatttacact tgcggaaagg
    11341 atacagacgc tccaatagct tgagggtctg gttggccgca cccacatctg gatagggacc
    11401 aaaatactga ccaccatcct tcttaatctg acgagtaatg atcagccttg gatgacgttc
    11461 cttggtaatc ttgataaaag gataagactt gtcgtccttg agcatgatgt tatagcgagg
    11521 cttgttctcc tggatcagat tgatttccaa caagagcgcc tcgatattag aatccgttac
    11581 gataaattca aagtccgcaa tctctgacac taaggcctct gtcttggtat catgggcacc
    11641 acgaaaataa gaccgcaccc gattacgcag gtttttggcc ttgcccacat agataatctt
    11701 tccatactta tttttatgga gataacaccc cggactgtcc ggcagcaact ccaacttgtg
    11761 cttgatcaaa tcgttcatag gtctattata gcaaattttc tgataatcga gcttattgca
    11821 ttccttttta cactcgactt cttggaatat atccacatcc atactacaaa aatattgata
    11881 gaaactattg cttttgtact aattaagcag tataataaat gtaattaatt gtatatatta
    11941 ttcgaagaac atttggaata cggcttggac tacctagcaa gctcctactt ttagttcacg
    12001 aataacaagg aggttattat gatacaattt gaccatatca caaaaacata cggcgaaaca
    12061 atcgcgcttg atgacctaaa tttgacaatt gaaagcggcg agattttcgg tttaattggt
    12121 cacaatgggg caggaaaaac aacgacaatc agtctactga cttcgataat cgaagccagt
    12181 tatggaacta tctctgttga tggtttaaac ctagaggaga accgcgatga agtcaaaaaa
    12241 cggatagcct atgttccaga ttcgccagac attttcctac acttaacagc ttttgaatac
    12301 tggcacttta tgggcaaggt ctatggtgta gaaaaggata cagttgatga ccgtatcgct
    12361 aaactctcta gtctatttga tatgacagcg cgccagcatg agcctattga tagtttttca
    12421 cacggtatgc gtcagaaaac cattattatt ggtgcattga tccctaaccc tgatatttgg
    12481 attttggatg aacccctaac tggactggat cctcaggctt ctttcgacct aaaacaaatg
    12541 atgaaagaac atgctcaatc tggtcacacc gttctatttt ctacacacgt cctttcagtg
    12601 gctgaacaac tctgtgaccg cattgctatt ctccgaaaag ggcaactcat tttcgtagga
    12661 agtcttgatg aactcaaatc acagtatcct gataaagatt tggagaccat ctatttggaa
    12721 ttagcgggac gccaacaagt gaaggcaggt gaggaagtat gagtaaatcc atcatttggg
    12781 aactagtaaa gattaatatt ctttattcca atcctcaact tctagcttcc gtcaagaaga
    12841 aacaaagtaa gcgcaaagac gcctcctttt cagcctataa aagtgtcctc ttgcaacaag
    12901 tatttatggt tttgagtttc ggacttctct attctgtctt tttcatggga gtggattata
    12961 gccagtccat cggtttcttt tctctgcaac tagcgctctt taccattatt gccattgtct
    13021 acggttttac aggtttcttc tccgttttct acgatagtaa ggatacaaag ttgtatttag
    13081 cacttcccct gaagccacaa gaagtcttcc tcgctaaaat cctctctgca caagggatgg
    13141 tcctaccctt cctcatgccg tgtctgtctt tacttctaat cacttactgg caaattggcg
    13201 gtccgctcct cgccttagct tccattcctt cctttttgat tctctggatt ttagttaatt
    13261 tagtcaatct gattatcatg cactttgttg gggaagttct aacaaaaagc cctcgtaaaa
    13321 cattgatttc tacaatcctg atgacaggtt cttccttgct ggcttttgct gcgctcatgt
    13381 tcctgcaatc tcagcagacc gtttcactcg aatccggtgg ctttgttgat tttcctatca
    13441 tacccatatt tgctggattc cattacctgg tcagccacac tatatcacta gaaacactcc
    13501 ttcattttgg acttcctttc attttgatga ttggacttat tgtgtttgcg tttaaaactg
    13561 tcattcccaa ctactttaat caagttttgg cgattgaaaa tgcttcgaca aaacggacca
    13621 ataatgctaa gtctgccaag attcctagca atctcaatca ggctttagtg aaacaccacc
    13681 tatctactct taaagatagc aacctcatgg tccaaaccat gatacaacca atcatcatgg
    13741 gagtggcgct ttttccaagt tttagccgtt tcacggagaa tggtggtcta agttcagttg
    13801 gatgggattt ctttggtatt gctctattag ctggattctt gcttggcagt ctatttgctg
    13861 gttctacaac cttcatcgga gtagccatgt cattggaaaa ggaaaattat catttcattc
    13921 gaacgcttcc tattagtttc aaaaaattta tcattcaaaa attctgggta ttggctgccg
    13981 tgcaatttgc actaccaact ctactttact ttgctttggc tctaggtttc atgaaagtca
    14041 aactcattct agcagtcttc tttacagtcg gcatcatcat ttcagccctg ctaactggtc
    14101 agatttatta ctggcgtgac caacgactcc tcatgctcaa ctggcaaaat agtaaccagt
    14161 tatttggtcg cggagcgggt caatggttga ttgctggatc gatcatagga acaatgtttc
    14221 tcggaatcat tattctagtt gtcagcatca tattagctgg cactattggt gcagcttatg
    14281 taagctcagc cttgatgacc ttactatttg ttctatctgc tgctcttcaa ctttatatct
    14341 acaaagctta ttggcaaaaa ctaaaataga ttggacgtta tccaatctat tttagttttc
    14401 tgcgtaatat tcctgaccgt agccttctac ttcagcattg atttgccaag agataccaaa
    14461 cttgtctgtt acattaccat aggcaggaga ccaaggaact gcttgaagtt ccatattgat
    14521 agcagttgca tctacggata acttgctgta tagttcctgc gctgtctcag catcatctgt
    14581 gataagcgca actgtaatat tgtcacctac tgtataaggc atttctgggt tgttgtctga
    14641 caacataaac cgttgaccat tcaaacgaaa ctgtgcattc atcacgtaat tttctagttc
    14701 agcagggcag tctggtaaga aatctttaaa tagatttact tgctccactg ttgccccaag
    14761 agcattttta taaaactcga tggcttccaa accattacca ttagtaacca agtatacttc
    14821 cattgcttta agcatgatgg acctccaaaa ttatgatggt ttattatatc acgagttagt
    14881 tatacggaca aatttttcaa cttatttctg actaaatgta aaattagtaa tctccacctg
    14941 gtacaccaaa atattcttcc aaggtcaagc ctgaattgta aatatctgtc gcttcttgac
    15001 caatatatcg cacatgccag gattctgcca tatagcctgt gctagactct tttcctggaa
    15061 gatagcggac aataaagcca tatagatgtg cattcgtagc caaccactga gaagcattag
    15121 gctcttctaa taaattacca cttgtatcca ataaatcaaa ggctaatcct gtctgatgtt
    15181 cactatatcc agctcttgca gaatacctat ctgccgctgc ttgtccttcc tgatttacat
    15241 aagactggta gagacttgcc tgagtttcat aggaacgaaa tccactgtag ttattggaga
    15301 caccaaatcc tagcgcctgc atatctgcta ttaatcgttg aaaagctgct aaggcttcag
    15361 gattttcccc cggtgcataa tcagctgcaa gcggatgctt tttatttgcg ataatcactt
    15421 ctccatattt tccttgtaca ctataatagg aaccgttaaa atttacctga gtctctgtac
    15481 ttgttacttc ttgattcgtt tccgccgatg tagagctgct tgttgactgc tccgaagttg
    15541 ttgaagcaga ctgacttgaa gtagtcgaaa caactgttga cgaatttttt gtagtattgg
    15601 cctgattagt attttgatga catgctgcta gtaacagtat tgtcggcaag cataacagaa
    15661 tagtacgttt cattatcatc accccgttct cttataatta tgtctattgt agcacaatca
    15721 taaaactcag tctaatgacg gcttatgatt ttaaccattt aatattttaa tgcacgttga
    15781 acttctctag atttattttc tttataagaa tgcacattta ccactgttgc aaaaatgata
    15841 acatacatgc cataaataga aacaccagcc tttcgactgg tggacatata tgatgttaaa
    15901 tagtcgtatt cacaagtaaa gtaatttata tacaaaatag tttttgagga aatactgact
    15961 gcattttgaa aaatcagtat tagctagaga tactgaactg taagtacaac tagatacctc
    16021 atcagtagtt tctaaacaaa cattattgtt gatttttaga tgacataccg ttttttacga
    16081 tgtcttctac cttcacatcc ggtttattat ttagcactcc taaaaataca agaatactaa
    16141 ggatgataca aatcgtctgc tcgatttggt tttatgataa agcaatcgaa atttgactga
    16201 acagattaaa tatatcagca caataaaacg ggtgatgata ccgagttgat agaaactatg
    16261 tatcatcatc cgtttgtcag ctgtagggag aaagaaatgt tatccgatta gcttgatgtc
    16321 ctttcttctc attgtttacc ctgctataaa caacgagaag aaacttgtac caaccatatc
    16381 cgcaagagca tgccctaaga aatatggtaa taaattatca tttttccttg tgtacatgta
    16441 gtaatagaaa agaccaaagg ctacaccaat aacaagagca gataccattc cttgataggt
    16501 atggaaagat atacggacaa ttgttgaaaa gagtaagacc agcgaacgct ttttcttatc
    16561 tgtactcaac aataagccta agaaaaagaa ctcttcatag aaaccattaa acaaggaata
    16621 gataactgtg ctgtagtcaa cggctagaaa acggttgagc actgtcatga tattccagtc
    16681 atagtaaggc aagtatccaa ggtaattata tccaccagat agaccaggaa tataagaaaa
    16741 agctgtaaat gccaaatcgc taatcaggcc cgcaccgatg aaaatcagtg gtccccagag
    16801 tagaacggtc cattctaatt ttacttttag ctgcttgaaa tcataattcc gaatcaataa
    16861 atacaccagg gcaaacagga ataattttcc ttgattggct agagcccacc aattatcggc
    16921 tggactaaac gataaaaccc ctgtttcaac ggtttctgtt gcggaaaatg atgctatcca
    16981 ttgcatggtt gaggtataaa tagcattacc acataaaatc gttgtgataa taaacaaatc
    17041 tatccaagtg agttctttta ggggctttgt tggacgaatg cgtctcagta atctgttcac
    17101 tttttcctcc ttatattttt gtacatattc tttctgtata attatatact aaaatcctta
    17161 taagtttctt aaaatatctt ataacaaatc taataattct tgatagctat gaatggtata
    17221 ggttggaact gccttactat tgtttatcat atgagtcgga ttgtaccaaa cagtatccat
    17281 gcccgcatta ttgccacctt gaatatctgc tgtcaaactg tctccaatca ttaaggcttg
    17341 gtcaaactga aaacctgcaa tctgctctgc tattttttca taaaaatcag ccgcaggctt
    17401 ttgcgtcccc atctgctcag aaataaatac ttctttaaaa tacgattgaa tcggtgagtg
    17461 aagcaagcga ttttcctgta tataggtcac gccgttggtc gctgcataaa tctggtagcc
    17521 tcggtgtgtc aattcctgca aaagcttatc tgcacctgta aaaatttgtc cctgccgccc
    17581 aataaattct tggtagcgca aggccatctc ccttccatca acttgccgac caaagtgggc
    17641 aaaggtccgt gaaaagcggg tgtttattag ctctttcttt gtaatgttcc ctttttccaa
    17701 atccttccac atgccctgat tgagcggtcg atagacttct ttaaaagctt gaatatcttc
    17761 aacctccata gctgtcaaaa actgggttaa ggctacttct tctccacggc taaaatcaag
    17821 aagagtatgg tcaagatcaa agagtaagtg tttgtattgc aagatgatag gtcctttcta
    17881 agcaggaact actgaaacga tgtcaggcag tatatctaaa gtataccata gtttctaaaa
    17941 aaatagctct gtgtcctaga ctctattata ctgtttttca gattttatac tctttaaaac
    18001 gttgtcaact tgcctcgatg agtgaaaagc tcctgtggag ctttttagcc tgttgccttg
    18061 aaataagaaa gcaacagagt tctatcatcg gcttcgtttc ctaggctact tttgattttc
    18121 gaagagtatg aataaaaaaa atacaacaca tttaatgcat tgtattttaa tcactatcta
    18181 tatttccaga aaattagcca ccgcttcttt ttttctagaa atgggtaaca tacgatcact
    18241 aagtccactc tgtaacaagg gcctatactt cttaatgtac tccttttctt tttttcttct
    18301 gattcccatc gcttcttcaa gctctagaat tccaaacatt aagatagggt tttgatcacg
    18361 aagggtttca gtggtcatcc ctaaatactc tgggtatttt ctcaactgat ataaatgttg
    18421 tgcacatctt atcagcatag aaaatgattc accgatatac aagactcgtc gttcaccatc
    18481 atctttctga agcgatattt gatatactcc tcccttgatg gcttttataa catcattttg
    18541 aaaaaattgt acctgaagat tcatccctac tcttccttac ttattggcgc caagctagct
    18601 aagactttct taagccccat ttctgggaaa ttgattttga gttcttgatt gctgcctgaa
    18661 cctgatactt caaggactgt cccgcgtccc catttcttgt ggactgcgat gtcaccaact
    18721 gaccagttgg tgcctgagct tgacgatttg ttacttgatg cgaagggcat gctacctccg
    18781 agcttggcag atggttgtac ggatgctttt cgactttgca tggcttgttg caaactcatg
    18841 ccttgtccaa actgtgtcgc tctgccattg atataggaag ccttaaagct gatattggca
    18901 gggcgggcaa gaccttggta gtcgaggagg tcgctggaaa tctcccgaat gaaacggcta
    18961 ggttggttgt aattggtgcg accaaagagc aggcgggagt tggcattggt caggtagagg
    19021 atctgctcag cacgggtgat tcccacgtag gccagacggc gttcctcctc caactcagct
    19081 tcctcttctg aagcacggct gagcgggaag acattttctt ccatgccaat caggaagaca
    19141 actggaaatt ccagaccttt ggctgcgtgg agggtcataa gagtcacttc tgaagattct
    19201 gtatcgccat catctgtgtc agcaatcagt gccaaatcaa gcaggaagcg tgtcaagcga
    19261 tccagacctg tctcttcttc ctcagtatcc ttttcgtcaa agtttttggt aacagacagg
    19321 aattcttgaa tgttttctat gcgagcattg gcttccagcg tattttgtgc tgcaagggca
    19381 tcaatgtagc ctgtttgatt caatactgcc tcgactactt gggtaaccgt caagttgtct
    19441 aattgattac gaagattata gaggagattg gctaggtcaa agactgcctg cgctgccttc
    19501 cctttaatcg gcgataacat aatatcctgt gaagcttcta gcaaggacat gctgtggctg
    19561 gtcgcaaaat cacggagttt gtcaaccgtg ccaggtccaa cgccacgttt tggctcattg
    19621 acaatacgtt cgtaggaaat attatccgat gggttagcaa tgatattcaa ataagatatc
    19681 acatcccgga tttccttacg gctgtagaac ttggtgccgc cgaccatggt gtaaggaata
    19741 ttggacttga gcagggcttc ttcaatggta cgggattggg cattggtacg atagagaact
    19801 gcaaaatcct tataagcctt gccttctcgg tacaactggt caatctgccc tgcgacaaaa
    19861 atcgcctcat cattctcatc tctggcacga tagtaagtaa tcaaatcccc ttgggcattc
    19921 tgtgtccaga gttttttggg acgtcgattg cggttgtttt cgatgacctc attggccgcc
    19981 tgcaagacag tcttagtgga gcgatagttc tcctctaaaa gcacgacctt gctctcagga
    20041 tagtcctttt caaagtccag gatattctgc atatccgctc cacgccagcc gtagatagac
    20101 tgatccgcat ccccgaccac gcagatattc ttgaaacgtg atgccaggag cttgaccaat
    20161 tggtactggg catggttggt atcctgatac tcatcgacat ggatatactg gaatttctgc
    20221 tggtaatagg tcaggacctc tggattttga tcaaaaaggc ggagcgtgag catgattaag
    20281 tcatcaaagt caacggcctc tgactgccgc agttccttct gataagcctt gtagcatttt
    20341 gcaacaatct gcgtgtatag gtcgcctgcc tgcgtttcaa atgccttgtc atcaatcaag
    20401 tcgtttttgg cattagaaat agttcccagg atagaacgtt cactccactt tttcggatct
    20461 agattgagat tttttaaaat ccgtttcatg aggctacgtt gctcgcctgg atcgacaatg
    20521 gtaaaattgc gattataacc aatatggtca gcatcccgac gcaaaatccg cacacacatg
    20581 gagtggaagg tagcaatcaa acagtcttgc gtagcaggat tgagggcgta ggcccgctcc
    20641 ttcatctcac gcgcagcctt gttggtaaag gtaatggcca agatattcca aggattgacc
    20701 attttttcat caatcaaata agcgatacgg tgggtcagga ctcgcgtctt acccgaacca
    20761 gcccctgcca taatcaatag cggaccttcc gtcgtctgca ccgcttctgc ctgtctgtca
    20821 ttcattccgt ttaataatgg gttcattttc tcatactttc ttagaacatg tattacaagt
    20881 ggagtgcttt taaataagag atagtttttc gctaatcaaa atagtttttt gaaggaatac
    20941 caactgtatc gtcatttagt ttttctttta ttacttcgac gtacgagaaa acttcgtttc
    21001 cctatttcca acttcaaaca ctccactgga gtgtttgaac tcgccttgcc tgattgaaac
    21061 agtctggggg actgtttcaa gtcaatgtct agaaacaaga aagcattgag ttatgcctac
    21121 ggctcgttgc ctagtactaa aagtaaacta aaagactata ttttgaaaaa actaacgatg
    21181 agtagctgaa aaactagcct tagatagaag tactacactg tgaatatagg ttcgttataa
    21241 tcattctctc cattatacca aaaaatctct cgataggcag ttcaatgtga tagatggcga
    21301 gcaaaaaagc ccagagttat ctctgagctt ttgtattcaa ttaattattc agcacccaat
    21361 gcagctactg tgatgtagtt gtatggtttg ttgaagtgtg gcaagaagaa caagtctgtc
    21421 aaggccaatt tttcgattgt tacgccttct tggattgcca atgagaagag gtggataccc
    21481 aatgagatgt cttcacaagc agccatttgc gcaccaagga tacgacgtga atctttatcg
    21541 taaacaatct tgatagtaac agggaagttg ccgtgctcca tgaattctgg tttttggttg
    21601 tctgttactt cagtaacagc agcattcaaa ccaagacgag tagctttttc aagtgtcaaa
    21661 cctgttgata caaggttaag accatagata gagataccgt tagaaccttg tacaccgata
    21721 ccttcaaggt cagtaccaca gatgttgtga gctgctacga taccagtacg tactgcgttt
    21781 gaagccaaag cgatgtagct tgtgtcgcca gtagcgttgt cgtagatagt tgcacagtca
    21841 ccgatagcat aaacgcctgg gattgaagtt tcttggcgtt tgtttacaag gaaggcaccg
    21901 ttgcggaagc gctcgattcc ttcacctgca aatgcagtgt ttggacggaa accaacagcc
    21961 aagataacca tgtcaacatc gtattcgctc ttgtcagtga tgattttctc aacttttccg
    22021 ttaccagcaa cttctttaac agtttcgcca aaggcaagtt gaataccatg ctcttccaag
    22081 tttttagcca taagatctga caaatcacgg tcatagtaac cagccaaaca tgtatctaca
    22141 acgtcgataa ggataacctc tttaccttta cgttggaatg cttctgcaag ttcaacaccg
    22201 atgtaaccag caccaactac tgctacgcgg ttgatgtctt tgtttttcaa tttttcaata
    22261 acatctgctg agttttggta caatttaacg aattgcaagt tttcaagagt tgcttcaaat
    22321 tcaagagaac cttctttgat ttcagctcct ttgattggtg gcaagatagg ttgtgaacca
    22381 gttgcgaaaa gaagtttttc aaatgattca acatgttctt gaccatttac aagtgcagta
    22441 actgtttttg catcgtagtc gatatttgta acaggagact ccatgtaaac tgttgctccc
    22501 aagctctcca actcttcttt gtttgagtag aaaagtcctt caggaccgcc aatttgctca
    22561 ccaatccaca aagccatacc acaacccaag aatgaaatat ttgagttttg gtcaaataca
    22621 acgatttcgt tttcttgacc ataatttgtc aacatagttt tgattgcggc cgtaccagca
    22681 tggttagcac cgacaacaac gattttagcc ataatgtgaa atctcacttt cgaaaatata
//
LOCUS       DASGAC010000015        22403 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.015, whole genome shotgun sequence.
ACCESSION   DASGAC010000015 DASGAC010000000
VERSION     DASGAC010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 22403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22403
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.015"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(97..1386)
                     /locus_tag="U1335_000459"
     CDS             complement(97..1386)
                     /locus_tag="U1335_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEM5230969.1"
                     /translation="MTSKTLKRPEVLSPAGTLEKLKVAIDYGADAVFVGGQAYGLRSR
                     AGNFTMDEMREGIEYAHARGAKVYVAANMVTHEGNEEGAGAWFRELRDMGLDAVIVSD
                     PALIVICATEAPGLEIHLSTQASSTNYETFEFWKELGLTRVVLAREVTMEEVAEIRKR
                     TDVEIEAFVHGAMCISYSGRCVLSNHMSKRDANRGGCSQSCRWKYNLYDLPFGEERRS
                     IKGEIPEEFSMSAVDMCMIDHIPDMIENGVDSLKIEGRMKSVHYVSTVTNCYKAAVDA
                     YLESPEKFEAIKQDLIDEMWKVAQRELATGFYYSPPSENEQLFGARRKIPEYKFIAEV
                     VAFDKETMTATIRQRNVINEGDQVEFYGPGFRHFETTIQDLHDSNGEKVDRANKPMEL
                     LTIKLDREIYPGDMIRACKSGLINLYQEDGQSLTIRA"
     gene            complement(1561..2490)
                     /locus_tag="U1335_000460"
     CDS             complement(1561..2490)
                     /locus_tag="U1335_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012997850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEM5230970.1"
                     /translation="MEKIIITATAESIEQVKELLAAGVDRIYVGEEDHALRIPTNFTY
                     DELREIAELVHSAGKELTVAANALMHQDMMDNIKPFMELMREIKVDYLVVGDTGIFYI
                     NKRDGYNFKLIYDTSVFVTSSRQINFWKDHGAVEAVLAREIPSEELFDIAKNLEMPAE
                     ILVYGASVIHHSKRTLLQNYYNFTKADETDLSRGRGLFLAEPSDPDSHYSIFEDKHGT
                     HIFINNDIDMMTKLSELDEHGYHNWKLDGIYCPGQNFVEIVKLFVQARDLIEKGDFTY
                     DQAFLLDEQVRKLHPAERGLDTGFYEFDRNKVK"
     gene            2651..2965
                     /locus_tag="U1335_000461"
     CDS             2651..2965
                     /locus_tag="U1335_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3270 domain-containing protein"
                     /protein_id="HEM5230971.1"
                     /translation="MALRHYQSHEYQYEEYIPKEKKANFQTYQAKNPNKERLKELLFF
                     VNIAFFSLITVIASYVYLSVGIPVFVAIILASATGFLGLRLVQIGLKKKFKPKQVIRR
                     NE"
     gene            complement(2987..3397)
                     /locus_tag="U1335_000462"
     CDS             complement(2987..3397)
                     /locus_tag="U1335_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM5230972.1"
                     /translation="MNIKEVSDVTGLSADTIRYYERIGLIPKIARKSSGVRNFSESDV
                     AILEFIRCFRSAGMSIERLIEYMGLVQAGDSTVEARIDLLKEEQEELRSRLSEIQQAL
                     DRLDYKIENYQTILRGAENQLFTDGGSSFKKGRG"
     gene            complement(3497..3691)
                     /locus_tag="U1335_000463"
                     /pseudo
     CDS             complement(3497..3691)
                     /locus_tag="U1335_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007894915.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
     gene            complement(3864..4058)
                     /locus_tag="U1335_000464"
                     /pseudo
     CDS             complement(3864..4058)
                     /locus_tag="U1335_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003104139.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
     gene            complement(4146..5081)
                     /locus_tag="U1335_000465"
     CDS             complement(4146..5081)
                     /locus_tag="U1335_000465"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000036024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese-dependent inorganic pyrophosphatase"
                     /protein_id="HEM5230973.1"
                     /translation="MSKFLVFGHQNPDTDAIASSYGWAHLEREVFGRDAEAVALGTPN
                     EETAFALDYFGVTAPRVVESAKAEGVSQVILTDHNEFQQSIADIKDVEVAAVIDHHRV
                     ANFETANPLYMRLEPVGSASSIVYRAFKENGVTPPKEVAGLLLSGLISDTLLLKSPTT
                     HATDPQVAAELAEIAGVNLEEYGLALLKAGTNLASKSAEELIDIDAKTFGLNGNDVRV
                     AQVNTVDIAEVLERQAEIEAAMTAASAANGYSDFVLMITDIVNSNSEILALGSNMDKV
                     EAAFNFKLENNHAFLAGAVSRKKQVVPQLTDAFNA"
     gene            5219..6916
                     /locus_tag="U1335_000466"
     CDS             5219..6916
                     /locus_tag="U1335_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEM5230974.1"
                     /translation="MKFSDYTYVRPDYEAIKAQFTDLTDQLAQASDLETTRTLVAAVT
                     KLLNLVDTQYNLWMIRHTIDMNDEFYNEETKFWNEYSPLFEELTTNYYRVIVQTPYKE
                     ELSDILPKTFFMQAENRLKTFSSAVIPLFQKENELTDEYSKLIAGAEIDFQGQTYNLA
                     QMGPFGQSTDREVRKAASAATTAFFESKEADFDRVYDELVKVRTEIAHKLGFKDYVEY
                     GYLKMNRFDYNRDMVKVYREEILKHIVPIVQNLRERQAKRLQVPSLKHYDLNLEFLDG
                     NAVPQGDPDFIVSQAQDMYRELSAETGEFFDFMIEHELLDLVAKPGKNSGGYCTYIPD
                     FKSPFIFSNFNGTSGDIDVLTHEAGHAFQVYRSRWIQSPEVVWPTYETCEIHSMSMEF
                     MTWPWMDRFFKEQVDKYKFSHLAGTLLFLPYGVLVDHFQHEVYEHPEMTPAERKATWK
                     KLQDLYLPDRDYSESEALNRGIFWYRQGHIFASPFYYIDYTLAQVCALQFWKRTQVDH
                     DENAWEDYIRICDLGGTKSFLQVVEAANLQSPFKEGALESTAKAAASWLEAVKDDEL"
     gene            complement(6945..7292)
                     /locus_tag="U1335_000467"
     CDS             complement(6945..7292)
                     /locus_tag="U1335_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5230975.1"
                     /translation="MATFTQHTVPECPFVTTQSVLSGKWSILLLHHIEEGPIRFNELH
                     RRLTGISQATLTKQLRQLEDDGLITRKVYAQVPPKVEYELSEIGQEFELVLEQIEVFG
                     DKYIEFVKAKKSE"
     gene            7540..8079
                     /locus_tag="U1335_000468"
     CDS             7540..8079
                     /locus_tag="U1335_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009732451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM5230976.1"
                     /translation="MKNILFIVGSLREGSFNHQMAKQAESILEGQATVSYLNYKEIPL
                     MNQDLETPVLPAVQAARDAIMAADAIWIFSPVYNFAIPGTVKNLIDWLSRALDLSETR
                     GPSALQDKIVTVSSVANAGHEPMFASYQALLPFVRMQVVGEFTGTTVNPEAWGTGQLV
                     LSEEAIAGLQAQAQALLEA"
     gene            8247..8867
                     /locus_tag="U1335_000469"
     CDS             8247..8867
                     /locus_tag="U1335_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEM5230977.1"
                     /translation="MKLYYIIDAYCGWTYGFNHIFTKFMQDHPDIEIEVINGGLFVGD
                     NKKKMVDFQQAQTINKQIESYYQMSFGDNYNQLFKDKDFTMDSLGPARAYSVLKNYVE
                     TSNHAQLTLDIQALFFEDGLDLNQADSYTSLIGTYQLPTKAMEELSSIFNQPENLHPD
                     FIKAYEMGVTSFPTLLLEKDGNFFNLINQVRTVDDLEKNFQEAITQ"
     gene            8883..9701
                     /locus_tag="U1335_000470"
     CDS             8883..9701
                     /locus_tag="U1335_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoplasmic protein"
                     /protein_id="HEM5230978.1"
                     /translation="MEKHYKLQNGTELHIFTNDESSFMVTATLIIKNGKALLVGSGFK
                     QSEGERIVRYLQDAQLTLEKIFIIQGDPDYYFALEPIKKSFPEVIVYATSYVIDHILK
                     TVSKKLQVWGGSLGDQAPKNIILPALIQESTLEFEGDKWEFFGSEPSQINLWNAETKT
                     IIGGINTFNQIHLFLADSQTTEQLKAWQDRLKDMKALDASLIIPGHADSESSFDSQAL
                     DFSIAYIEVAIKLKKEVKDSATFVAKMKEKFPNLRNEGVLELSAKVLTGEIPWG"
     gene            9705..10106
                     /locus_tag="U1335_000471"
     CDS             9705..10106
                     /locus_tag="U1335_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEM5230979.1"
                     /translation="MSKNQLYKNILEETYLATAQGRIEDFKSHLAADISWTEAAGFPY
                     AGTYIGPDAVIENVHARLGSEWTNYSATPIDHAFSGNRVMVYGYYKGTYNLTEKSFQA
                     DFVHIYDFNADNKIANFIQVVDSALVEKAMR"
     gene            10193..11035
                     /locus_tag="U1335_000472"
     CDS             10193..11035
                     /locus_tag="U1335_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5230980.1"
                     /translation="MYNSKFELGHVALNVRDLELQSLFYQQVLGLQVLTENSNQIDLG
                     VGKNILIRLIQTEQKGEVSHSYGLYHLAIVLPSREDLGTIFRHFIDNKIPLQGASDHG
                     YSEAIYLADTEGNGIEIYRDLPQDSWDVRPDGRIVGITEPMDAETIYALGKKADAAYQ
                     MPAGSRMGHVHLSVRESAASSRFYQEVLAVEDKFSVPSAAWLASGDYHHHLAVNEWGG
                     KHLQTRTEGMPGLSYYTVIYSNQEAFEATLERATAANLNLQRLDNSVAFVDVDGIKTK
                     LVLE"
     gene            complement(11224..12366)
                     /locus_tag="U1335_000473"
     CDS             complement(11224..12366)
                     /locus_tag="U1335_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-hexosaminidase"
                     /protein_id="HEM5230981.1"
                     /translation="MRKRFNVLGTSIACLLFIGLMLGLFFLGDRTQKEQTKVVTTSSS
                     QEISARDKVIANYLNQMTLEEKVGQMIFARMPSAGQTEALETYHFGGYILFATDFEGK
                     TLEQVKEEIASYQSLSKVPLLMASDEEGGTVTRISQLLETPFPSPLELYQSGGIEAIL
                     SDAKQKTSLLKGEGIYAGFFPVADLSTDPSSFIYDRTIGQDAKTTADYIGQLVSLLKE
                     ERFASTLKHFPGYGDNADSHTDLVYDNRSLEELRVNDFLPFRAGIEAGADSIMISHNI
                     VPDIDDVPSSISPEINKILRNELGFEGVIMTDDFDMQGLVQFVDQDTGALQTIQAGTD
                     MILSSSYASQVPYIVEQVKNGTITEERIYQSVKRILGMKYDLGLIK"
     gene            complement(12388..13179)
                     /gene="pflA"
                     /locus_tag="U1335_000474"
     CDS             complement(12388..13179)
                     /gene="pflA"
                     /locus_tag="U1335_000474"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase-activating protein"
                     /protein_id="HEM5230982.1"
                     /translation="MMTEIDYRKVTGLVHSTESFGSVDGPGVRFVVFMQGCHMRCQYC
                     HNPDTWDLVNPAATERTAEDVLNEALRFRMFWGKEGGITVSGGEATIQIDFLIALFTL
                     AKEKGIHTTLDTCALTFRSTERYLEKYNRLMEVTDLVLLDIKEMNPEQHRIVTGHSNK
                     TILECARYLSDIGKPVWIRHVLVPGLTDRDEDLVELGKFVKTLNNVERFEVLPYHNLG
                     EFKWRELGRPYPLEGTKPPTKARVENAKALMETETYQEYLNRIKG"
     gene            complement(13296..14633)
                     /locus_tag="U1335_000475"
     CDS             complement(13296..14633)
                     /locus_tag="U1335_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEM5230983.1"
                     /translation="MEDPGSQTIYLQLLILFLLTLFNAFFSASEMALVSLNRSRVEQK
                     AADGEKKYIRLLQVLENPNNFLSTIQVGITFISILSGASLANDLGAVFAKWMGNSTTA
                     QTAGYWLALAMLTFVSIVLGELYPKRIAMNMKENLAVVTAPVIIFLGKIVSPFVWLLS
                     AATNLISRITPMNFDDADEQMTRDEIEYILTKSEKTLDAEEIEMLQGVFSLDELMARE
                     VMVPRTDAFMVDIEDDTATIMAAILKQNFSRIPVYDGDKDNIIGLIHTKKILSEAFSN
                     GFDNLNIRRIMQEPLFVPETIFVDDLLTSLRNTQNQMAILLDEYGGVAGLVTLEDLLE
                     EIVGEIDDETDKTEIFVREIADNTYIVQGNMTLNDFNEHFEMELESDNVDTIAGYYLT
                     GVGTIPSQDEKVSFEVDSKDHHLVLINDKVKNGRVTKLKLLITPLEKEETDKD"
     gene            14766..15545
                     /locus_tag="U1335_000476"
     CDS             14766..15545
                     /locus_tag="U1335_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5230984.1"
                     /translation="MIISMKNVHYKRQGKTILEDINWEFRKGERWAILGLNGAGKSTL
                     LRILMAEFWKTSGDLTVLGVEFGKGDIPSLRTKIGVVGSFLAERFPIDLTAEQIVLTG
                     KYKSSILYREYGQAELDEAIDMLKTIKADHLIGRTYASLSQGERQLLLIARSLMEEPA
                     ILILDEATVGLDLLARERLLHHIDHICQLPTAPAIIYVTHHAEEITDNFTHVLLLKDG
                     KVLAQGAKQDILTPELLSDFYGNQVELIDLGEGRMFIKPIL"
     gene            complement(15563..16117)
                     /locus_tag="U1335_000477"
     CDS             complement(15563..16117)
                     /locus_tag="U1335_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5230985.1"
                     /translation="MLRPLHMAHAFLDEILTDQDLAVDATMGNGHDTLFLAQRAGKVV
                     AFDIQEQALTTTAEKLEKAGLTNAQLVWTGHENLDQYVEECKAAIFNLGYLPSADKSV
                     ITLPATTLQAIEKVLDRLVVGGRLAIMVYYGHEGGALEKDAVLDFVGQLDQTVFTAML
                     YKPLNQVNTPPFLVMVERLKSSSN"
     gene            complement(16127..16645)
                     /locus_tag="U1335_000478"
     CDS             complement(16127..16645)
                     /locus_tag="U1335_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM5230986.1"
                     /translation="MDRRIAKTKRAIFQAFLTLLNDKGYDDMRVQDVIDLADVGRSTF
                     YAHYASKEALLEELCHDLFHHLFTGREDADVKTLLAHIFKHFRTNQDRVASLLLSRNA
                     YFLRELEAELKHDIFPKVVEDYMQGKGNLPEDLLVHFVVTTFVETVSWWLQQRKKVDE
                     ATLTEYYVRLLA"
     gene            16767..17585
                     /locus_tag="U1335_000479"
     CDS             16767..17585
                     /locus_tag="U1335_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM5230987.1"
                     /translation="MSSSKNTFIAFLLNLSFSIIEFIFGWIFGSSAILADAVHDLGDA
                     LAIGSSAIMQTYANKPADKFYPFGYKRWNILAAFLTSSILIIGSILILVENIPNLFHP
                     NPVNQDGMLILGIIAVIINFLASRIVKNGHSHNESILSLHFLEDILGWLAVILVSIIL
                     QFTDWYFLDPLLSFCIAIFILSKALPKAWNSVKILLETSPQGVNLEEVKEILLALENV
                     HEITQLNVWTMDGYDHCATVTVKLTNPAVADKTKAKIRNSLITFGIVQSTIEIL"
     gene            17639..18283
                     /locus_tag="U1335_000480"
     CDS             17639..18283
                     /locus_tag="U1335_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEM5230988.1"
                     /translation="MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCKACKRRLK
                     AWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEFLAGLVVLLCHFQVLNLTETILILAG
                     LVLTIYDIKHQEYPFAVWLIFTFIALVLSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
                     YLASLSLLFGFTEILWIIQLSSLLGLLVFAIFKPKSIPYVPLLFLSSIPIILCI"
     gene            18391..19851
                     /locus_tag="U1335_000481"
     CDS             18391..19851
                     /locus_tag="U1335_000481"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEM5230989.1"
                     /translation="MTLFKDDSLTLHTDLYQINMMQVYFDQNIHNKHAVFEVYFRSQP
                     FKNGYAVFAGLERVVNYLNNLSFSQTDIDYLTELGYPQDFLDYLSQLEMTLTVRSAKE
                     GDLVYANEPILQIEGPLAQCQLIETALLNIVNYQTLIATKARRIKAVIEDEPLMEFGT
                     RRAQEMDAAIWGTRAAFIGGASATSNVRAGKIFGIPVAGTHAHALVQAYGDDYKAFKA
                     YAETHHDCVFLVDTYDTLRIGVPAAIKVAKEMGDKINFKGVRIDSGDMAYISKKVRQQ
                     LDDAGFTDAKIYASNDLDENTILNLKMQKAKIDVWGVGTKLITAYDQPALGAVYKIVS
                     IEDEDGNMRDTIKLSSNAEKVSTPGKKQVWRITSKEKGKSEGDYITFADTDVTQMDNI
                     YMFHPTYTYINKTIENFDARPLLVPIFEKGKQVYELPSLAEIQTYANQEFDKLWDEYK
                     RVLNPQLYPVDLAQDVWDNKMNLINRIRKQTQTKSI"
     gene            19864..20688
                     /gene="nadE"
                     /locus_tag="U1335_000482"
     CDS             19864..20688
                     /gene="nadE"
                     /locus_tag="U1335_000482"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000058066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HEM5230990.1"
                     /translation="MTLQETIIKELGVKPSIDPEEEIRRSIDFLKDYLKKHPFLKTYV
                     LGISGGQDSTLAGRLAQLTMEEMRAETGDDSYQFIAIRLPYGVQADESDAQAALAFIQ
                     PDVSLTINIKESTDAMVAAVNANGLAMSDFNKGNAKARMRMIAQYAIAGERKGAVIGT
                     DHAAENITGFFTKHGDGGADILPLFRLNKRQGKQLLAELGADEKLYLKVPTADLEEDK
                     PGLADEVALGVTYEQIDDYLEGKTIDPQAQTIIEGWWNKTAHKRHLPITIFDDFWK"
     gene            complement(20731..21906)
                     /gene="trpB"
                     /locus_tag="U1335_000483"
     CDS             complement(20731..21906)
                     /gene="trpB"
                     /locus_tag="U1335_000483"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEM5230991.1"
                     /translation="MTEKGYFGQFGGSFVPEQIQVLLDQLEETFEQYRNDPEFLAEYQ
                     AYLKDYAGRETPLYFAESLSKELGGAKIYLKREDLNHLGSHKLNNVLGQILLAKRMGK
                     TRVIAETGAGQHGVATAAVAARFGLGCDVYMGAEDVKRQRLNVFRMEMMGARVHAVTD
                     GTQTLKEAVDAAFGAWMADLDAFYVLGSAVGPHPYPTIVHEFQKIISLESRRQILEKE
                     GRLPDYVIACVGGGSNAIGAFSQYLPDESVKLIGVEAAGKGVDTELHAATMTKGTVGV
                     VDGMKTISLFDENGGVAPVYSISAGLDYPGVGPEHAHYKETGRVNYVAATDDEAVNAL
                     LTLSRTEGILPAIESSHAIAEAIRLAPQLDKDKIIIINVSGRGDKDVAAIADYLENR"
BASE COUNT         6518 a         5203 c         4331 g         6351 t
ORIGIN      
        1 gtttaatgac ttgctatctt tcacaaactt cttcaatttt ttatattttt aagagtttat
       61 ctacgttctg aagctgaaat ttcagccttt ttatgtttat gcacgaatag ttagagattg
      121 cccatcttct tggtagaggt tgatgaggcc tgatttgcag gcacgaatca tgtcaccagg
      181 atagatttca cggtccagct taatagttaa gagttccatc ggcttgttgg cacggtcaac
      241 cttttctcca tttgaatcat gcaagtcctg aatagtggtt tcaaaatgac ggaaacctgg
      301 tccgtaaaac tctacttggt caccttcgtt gataacatta cgctgacgaa tggttgcagt
      361 catggtttcc ttgtcaaaag ccactacttc ggcgatgaat ttgtattctg gaatcttacg
      421 gcgggcaccg aagagctgtt cgttttcgct cggtgggcta tagtagaatc ctgttgccaa
      481 ttcacgttgg gcaaccttcc acatctcatc aatcaggtct tgcttgatcg cttcaaactt
      541 ttctgggctt tcaagataag catctaccgc agccttgtag caattagtta cggttgatac
      601 gtagtgaaca gatttcattc gaccttcgat tttcagacta tcaaccccat tttcaatcat
      661 gtctgggata tggtcgatca tacacatatc caccgcagac atagagaact cctctggtat
      721 ttccccctta atcgaacggc gttcttcgcc aaatgggagg tcgtagaggt tgtatttcca
      781 gcggcaagac tgggaacatc cgccacggtt ggcatcgcgt ttactcatgt ggttggagag
      841 gacgcaacgg cctgagtagg agatacacat ggctccgtgg acaaaggctt cgatttcaac
      901 atctgtccgt ttgcggattt cagccacctc ttccatagtc acttcgcggg ccaggacaac
      961 gcgggtcaag cccaattctt tccagaattc aaaggtttca tagttggtgg aagaagcctg
     1021 ggttgacagg tggatttcaa ggcccggtgc ttcggtcgca cagatgacaa tgagggcagg
     1081 gtcggaaacg ataacggcat ccaagcccat atcccgcaat tcgcggaacc aggctcctgc
     1141 cccttcttca ttgccttcgt gggtaaccat gttggcagct acatagacct tggcaccgcg
     1201 ggcatgggcg tattcaatcc cttcccgcat ctcgtccatg gtaaagttcc ctgcgcggct
     1261 acgcaaaccg taggcctgac caccgacaaa gacagcatca gcaccataat caatggcaac
     1321 cttcaatttc tccaaagtcc cagcaggtga caagacctcg ggacgcttta atgtttttga
     1381 cgtcatgtaa aatctcctct atttgcgacg gtttccacat gaaacgatat tttttcatgt
     1441 ggagacctag tgcagagttt agaaaatcgc ccaaaggcgt tttcgtgctc tgactttaca
     1501 tagtaagtga cagagctaac tctgccaggt taaagtaaat aaattctact ataaatattg
     1561 ttatttaacc ttattgcggt caaattcgta gaagcctgta tccaagccac gttcagctgg
     1621 atggagcttg cgtacctgtt catccaaaag gaaggcctga tcataagtga agtcgccttt
     1681 ttcaatcaaa tctcttgctt gaacaaaaag cttaacaatt tcaacaaagt tctgaccagg
     1741 gcaatagata ccatcaagtt tccaattatg ataaccatgt tcatctaatt cggacagctt
     1801 ggtcatcata tcaatgtcat tgttgataaa gatatgggtg ccatgcttat cttcaaaaat
     1861 ggaatagtgg ctatctgggt cgctcggctc agctaagaaa agtccacgtc cacgtgacaa
     1921 atctgtctca tcagcctttg taaaattgta gtaattctgt aacaaggttc gtttagaatg
     1981 gtgaataaca gaggcgccgt agaccaagat ttccgctggc atttccaagt tcttagcaat
     2041 atcaaagagt tcttctgatg gaatctctct tgccaaaaca gcctctactg ctccatgatc
     2101 tttccaaaag ttaatctgac ggctggaagt cacaaagaca gatgtgtcat agattagctt
     2161 gaaattgtag ccatcacgtt tattgatata gaaaattcca gtatctccga caaccagata
     2221 atcaaccttg atttccctca ttagctccat aaacggtttg atattgtcca tcatatcttg
     2281 atgcatgagg gcattggcag cgaccgtcaa ttccttccca gcgctatgaa ctagctctgc
     2341 tatttccctg agttcatcat aggtaaaatt tgttgggatg cgaagggcat gatcctcttc
     2401 cccaacataa atacggtcaa ctcctgctgc aagcagttct ttgacctgct caatactttc
     2461 agctgttgct gtaatgataa ttttttccat aaagttcatt atatcacaaa gtattgtcta
     2521 tgataaggag atacctgtat tttaatgttc agacttttct aatttttctc ttgtaacatt
     2581 attgtaatat aaatgacata aaaattcagc aatgttatgg tactctttaa ggagcagaaa
     2641 aggagacgat atggcattaa gacactatca gtcccatgag taccagtacg aagagtatat
     2701 cccgaaagag aaaaaggcta attttcaaac ctatcaggca aaaaatccca ataaagaacg
     2761 tctaaaggaa ttgttgtttt ttgttaatat cgcatttttt agtttgataa cagtcatcgc
     2821 tagttatgtc tatctatccg taggcattcc tgtttttgtt gccatcatat tggcaagtgc
     2881 gacgggtttt cttggactac gtttggttca aattgggcta aagaagaaat ttaaacccaa
     2941 acaagttata agaagaaatg aataatgaag tataaaggca gagaagttat cctctgcctt
     3001 ttttgaatga actaccgccg tctgtgaaca attgattctc tgcacctctt aatatagtct
     3061 ggtaattttc tattttataa tctaaacgat ctagagcttg ctgaatttcc gacaagcgtg
     3121 accgcagttc ttcctgctct tcttttagta aatcaatccg agcttccact gtactatctc
     3181 ctgcctgcac caagcccata tactcaatca agcgctcaat agacatacca gcactcctaa
     3241 aacagcggat aaattccaaa atggctacat cactttccga aaaattcctt actccagaag
     3301 attttcttgc aattttggga ataagtccta tccgctcata gtagcgaatg gtatctgctg
     3361 atagacctgt tacatcacta acttctttga tattcattcc aggctccttt ctttgttttc
     3421 gcttattata cactttgaag tccactccag gtcaagtcat tatataaaaa atctgggtat
     3481 ccccagattt gccatcctat aaatactcgc cctggacaac aaagaaggtg ccacgaattt
     3541 cgccagctag tttggagcgt tggcgggcaa acttgaattt gccttcaaat tctttgggaa
     3601 tgtcaatgcc gtctgacaat ttgaaaccga ccgctcgttt gcctccttct tctagcgtat
     3661 agaggacatt gacagccagg ccattgtcat atcgtcattc agtttatctt ttattactgc
     3721 gttaactcgc tttgccgtac tcctgtactg cctgcagctc gttgcctagt actaaaagca
     3781 aactgaaaga ctataaaagt tgggctgggt tgaaggagtg taggggagtt tgatagtcag
     3841 gggagtgact atcaaagcac aaaacgctct gccaagacct tctcgatgaa gggcaggatt
     3901 tcaggcttct cttctggagt atagaccacg aactcctgct tgtatttgtt ccagaaatag
     3961 cgggcttcat tggcacgcag acctgccaag acttctgcga ctggactagt ttctaagcct
     4021 gtcgtttcga cttctttaaa atttactgta taagacatga ttttcctttc aataaagaaa
     4081 gcacccgaag gtgctaggta aggcattcct accgacttca ggttcgaggt cggtagaaaa
     4141 atttattagg cgttgaaagc atctgtcaat tgtggcacca cttgtttttt acgtgaaact
     4201 gcaccagcaa ggaaagcgtg gttgttttcc agcttgaagt tgaaggccgc ttccaccttg
     4261 tccatgttgc taccaagcgc aaggatttca gagtttgagt taacgatgtc tgtaatcatc
     4321 aaaacaaagt cagagtagcc atttgctgct gatgctgctg tcatagctgc ttcgatttct
     4381 gcttggcgtt ccaagacttc tgcaatatcc actgtgttga cttgggccac acgcacgtca
     4441 tttccgttca aaccaaaggt ttttgcatcg atgtcaatca attcttctgc cgacttgctg
     4501 gcaaggttgg ttcctgcttt caagagtgcc aagccgtatt cttccaagtt tacaccagca
     4561 atttcagcca attcagctgc tacttgtgga tctgttgcat gagtggttgg cgatttgagc
     4621 aagagggtat ctgaaatcaa acctgatagg agaagtccag ctacttcttt tggaggtgtt
     4681 actccgtttt ctttaaatgc acggtaaacg attgatgatg ctgaacctac tggctccaaa
     4741 cgcatgtaca atggatttgc cgtttcgaag tttgcaacac ggtggtggtc aataaccgct
     4801 gctacttcca catccttgat gtctgcgatt gattgttgga attcattgtg gtctgtcaag
     4861 atgacttggc taacgccttc tgccttagca gactcaacca cgcgcggtgc agtaactcca
     4921 aaatagtcaa gcgcaaacgc tgtttcttca tttggcgttc caagtgcaac tgcttccgca
     4981 tcacgaccaa acacttcacg ctccaagtga gcccaaccgt atgatgatgc aatggcatct
     5041 gtatcaggat tttggtgacc aaaaactaaa aatttagaca tgtctacaac ctcatttttc
     5101 taataatctc ctacatttta ccataaatag acagacttgt gaacatggac gggtcgggat
     5161 ttgccaaacg ttttcaaaaa gagtaagata gaaggtagca atacaaaagg agaatcatat
     5221 gaaattttca gactatacct atgtccgtcc cgattatgaa gctatcaagg ctcaatttac
     5281 tgacctgacc gaccagttgg ctcaggcaag tgacttggaa acaactcgta cacttgtggc
     5341 agctgttaca aaattactca acttggtcga tacccagtac aacctctgga tgatccgtca
     5401 tactatcgac atgaacgatg agttctacaa tgaagaaacc aagttttgga atgaatattc
     5461 accacttttt gaagaattga ccaccaacta ctaccgtgtc attgtgcaga cgccgtacaa
     5521 ggaagaactg tcagacatct tgcctaaaac cttcttcatg caggctgaga acaggctcaa
     5581 gaccttctca tcagctgtca ttcccttgtt ccaaaaggaa aatgaattga ccgatgagta
     5641 cagcaaactg attgctggtg cggagattga tttccaaggt cagacctaca acctggcaca
     5701 aatggggcca ttcggtcaat caactgaccg cgaggtccgc aaggctgctt ctgctgccac
     5761 aactgccttc tttgaaagca aggaagctga ttttgaccgt gtttacgatg aattagtcaa
     5821 ggtccgcacg gaaatcgccc acaaacttgg cttcaaggac tatgtggaat acggctacct
     5881 caagatgaac cgtttcgact acaatcgcga catggtcaag gtgtaccgtg aggaaatcct
     5941 caaacacatc gtaccgattg tgcaaaatct tcgtgaacgc caagccaaac gcttgcaagt
     6001 accaagcctc aaacactacg acctcaatct tgagttctta gacggcaatg cggtcccaca
     6061 aggtgaccct gattttatcg tcagccaagc ccaagacatg taccgtgaat tgtccgcaga
     6121 aacaggcgaa ttcttcgatt tcatgattga gcatgaactc ttggacttgg ttgcaaaacc
     6181 aggcaaaaac agcggtggct actgcaccta tatccctgac ttcaagagcc cattcatctt
     6241 ctctaacttc aacggaacca gcggtgatat tgatgtcttg acccacgaag caggtcacgc
     6301 tttccaagtc tatcgttccc gttggattca aagccctgaa gttgtctggc caacctatga
     6361 aacctgtgaa atccactcca tgtctatgga atttatgacc tggccatgga tggaccgttt
     6421 cttcaaggaa caagttgata aatataaatt tagccacttg gctggcactc tactcttctt
     6481 gccttacggt gtcttggtag accacttcca gcacgaagtc tatgaacacc cagagatgac
     6541 accagcagaa cgcaaggcga cttggaagaa actccaagac ctctacttgc cagaccgtga
     6601 ttattctgag tcagaagccc tcaaccgtgg tatcttctgg taccgtcaag gtcatatctt
     6661 tgctagccca ttctactaca tcgactacac cttggcccag gtttgtgccc tccaattctg
     6721 gaaacgcacg caggtggatc acgatgaaaa tgcttgggaa gactacatcc gcatctgtga
     6781 tttgggtggc accaagtcct tcttgcaagt ggttgaagct gcaaacctcc aatcaccgtt
     6841 caaggaaggc gcccttgaaa gtacagccaa ggctgctgcc agctggctag aagccgttaa
     6901 ggatgacgaa ctataaaaga caaaaatctg aatgagattc aaactcattc agattttttt
     6961 gctttgacaa attcgatgta cttatcccca aaaacttcaa tttgctccaa aaccaactca
     7021 aattcctgac caatctcgct cagttcatat tccacctttg gcggaacctg tgcataaacc
     7081 ttacgagtga ttaaaccatc atcttctagc tgacgcaact gcttggtcaa ggttgcttgg
     7141 gaaatccctg tcaatcgacg gtgcaattca ttaaaccgaa tgggaccttc ttcgatatga
     7201 tgtagtaata agatactcca tttccctgat aagacactct gagtggtcac aaaaggacac
     7261 tccggaaccg tatgttgtgt gaaagttgcc ataatttctc ctttattttc ccttgatatt
     7321 acacattact tcacaaaaag atagtgacta ttcaaaaaaa tcgtacttgt tttattttta
     7381 gtacctgata caataatacc ataaactgcg agagcaggaa agtattttct caaaaggagc
     7441 gatacaatga atatcaattg cactatataa tacaaaggag tacctatgtc actaatttca
     7501 gttttcaaaa atatttttac aaaaaaggaa gaaaaaaaca tgaaaaacat tctatttatc
     7561 gtcggttcac tacgtgaagg ttcatttaat caccaaatgg ctaaacaggc tgaaagcatc
     7621 ttagaaggtc aagcaactgt atcttatctt aactataaag aaatcccgct tatgaatcaa
     7681 gaccttgaaa caccagtctt gccagctgtc caagctgcac gcgatgcgat tatggctgca
     7741 gatgccatct ggattttctc accagtttac aactttgcta ttccaggtac tgtgaagaac
     7801 ttgattgact ggctcagccg tgccctagac ttgtcagaaa cacgtggtcc atctgcacta
     7861 caagacaaaa ttgttactgt atcatctgtt gccaatgctg gacatgagcc aatgtttgct
     7921 agctaccagg cactcctacc atttgttcgc atgcaagtcg ttggtgagtt tacaggtaca
     7981 actgtcaatc cagaagcatg gggaactgga cagttggtat tgtcagagga agccatcgct
     8041 ggtctgcaag ctcaagctca agctttgtta gaagcttaga ttctacaggt caatatacat
     8101 ccttctatga tctttatcga gttgaagatg ataaaattgc agaactctgg gatgttgttg
     8161 taccaatcga ggaagattcc aaaacttcca atagcaatgg taaattctaa tcaaaaacca
     8221 agaaatcgaa atgaaagaaa tttaatatga aactatatta catcatcgat gcttattgtg
     8281 gttggaccta cggctttaac cacattttca caaaattcat gcaagaccat cctgacatag
     8341 aaatagaggt cattaacgga ggcttgtttg tcggagataa caaaaagaaa atggttgatt
     8401 tccagcaggc acagaccatc aacaaacaaa tcgaaagcta ttaccaaatg tcttttggcg
     8461 ataactacaa tcaattgttt aaggataagg actttaccat ggactccctt ggtcctgcta
     8521 gagcctactc agtcttgaaa aactatgttg agacatctaa ccatgctcaa ctaacattag
     8581 acattcaagc cttatttttt gaagatgggt tagacctcaa tcaagcagac agttacacca
     8641 gcctaatcgg tacctatcag ttacctacaa aggctatgga agaactatca agcatcttca
     8701 atcaaccaga aaatctacac ccagacttta tcaaggctta tgaaatgggg gtaacctctt
     8761 tcccaacctt gttacttgaa aaagacggga acttctttaa tcttattaac caagttcgca
     8821 cagtagacga tttggaaaaa aatttccaag aggctattac gcaatagaaa gggcaactat
     8881 ttatggaaaa acattataag ctacaaaatg gaacagaatt acacatcttt acaaatgacg
     8941 aatcaagttt tatggttacg gcgaccttaa tcattaaaaa tggcaaggct ctccttgtag
     9001 gttcagggtt taaacaatca gaaggagagc gaattgttcg ctatctacaa gacgcgcaac
     9061 tgacattaga aaaaatcttt atcattcaag gggatccaga ctattatttt gctcttgagc
     9121 ctatcaaaaa atcattccca gaagtcattg tctatgcaac gtcttatgtt atcgaccata
     9181 ttttaaaaac agtatcaaaa aaattacagg tatggggagg ctctttaggt gaccaagctc
     9241 ctaaaaatat tattttacca gcgctcattc aagagtctac attagaattt gaaggtgata
     9301 aatgggaatt tttcggtagt gaaccaagtc aaatcaatct ttggaatgca gaaaccaaaa
     9361 ccattattgg cggtatcaat acctttaatc aaattcatct cttcttagca gattcacaaa
     9421 ctaccgagca attgaaagcc tggcaagatc gattaaaaga tatgaaggca ctggatgcct
     9481 ctctcattat tccgggtcat gcagatagtg aaagttcatt tgattctcaa gcacttgatt
     9541 tttcaatcgc ctatattgaa gtagcaatca aattaaaaaa agaagtcaaa gactcagcta
     9601 cttttgtcgc taaaatgaaa gaaaaattcc ctaatcttcg taacgaggga gtcttagaat
     9661 tgagtgctaa agtcttaaca ggtgaaatac catgggggta atgtatgtca aaaaatcaat
     9721 tatataaaaa tattttagaa gaaacttatc tagctactgc tcaaggtcga atagaagatt
     9781 tcaagagcca tttagctgct gatatctctt ggacagaagc tgcaggcttt ccctatgctg
     9841 gtacctatat cggtccagat gcagtgattg aaaacgtcca tgcaagacta ggttctgaat
     9901 ggaccaatta tagtgccaca cctattgatc acgccttttc aggaaaccgt gtcatggttt
     9961 atggctacta caagggaacc tacaacctta ctgagaaatc ctttcaagca gactttgtcc
    10021 atatctatga ttttaatgca gacaataaaa ttgctaactt catccaagtt gtagatagcg
    10081 cacttgttga gaaagctatg agataaaaat caattttcaa aagtctattc gtcacacatt
    10141 aactaagtaa ctcgaaaatt cctataaatt gtatcagaaa gccaggtatt ccatgtacaa
    10201 ttccaaattt gaactgggcc acgtcgccct caatgtccgc gatttagagc ttcaaagcct
    10261 attttaccag caggtattgg gcctccaagt tctgactgaa aactctaacc agattgatct
    10321 tggcgttgga aaaaacatcc ttattcgact tattcaaaca gagcagaaag gtgaagttag
    10381 ccacagctac ggactctatc acttggccat tgtcctacct agccgtgagg acctagggac
    10441 cattttccgc cactttatcg acaataagat tcccctccaa ggcgctagcg accacggtta
    10501 cagcgaagcc atttacctag ccgacaccga aggcaatggc atcgaaattt accgcgacct
    10561 cccgcaagac tcttgggatg tccgcccaga cggccgtatc gtcggcatta ctgagcctat
    10621 ggatgctgaa acgatctatg ctttagggaa aaaagctgac gcagcctatc agatgccagc
    10681 tggcagtcgc atgggtcatg tccatctatc tgtccgagaa agcgctgctt ctagccgatt
    10741 ttaccaagaa gtcctagctg tcgaggataa attctccgtc ccatctgcag cctggttagc
    10801 ttctggtgac taccatcacc acctagctgt caacgaatgg ggcggaaaac atctccaaac
    10861 acgaactgaa ggcatgccag gactttccta ctatacggtc atctattcca atcaagaagc
    10921 ttttgaagca accttggaac gcgccacagc tgcgaaccta aaccttcaaa gactagacaa
    10981 tagcgtagcc tttgtcgatg tggatggtat aaaaactaag cttgttttag aataatacga
    11041 aaagaggctg ggcaaaaaga ccaacctcgc ttctcagggt tcgtgtcaac atctcagcgc
    11101 agtggttgat tggtagattt gttcgtgttt tacactccaa atctaaccta atcaactgtg
    11161 cgggggcggg aagacgaact ctttttttga ccagtcgagt tctttcccgc tccctttctt
    11221 tgtttatttg attaagccaa gatcatattt cattcccaaa atccgtttga cggattggta
    11281 gatccgttcc tctgtgatgg ttccattctt aacttgttct acaatataag gaacttgact
    11341 tgcataacta gaagataaaa tcatatctgt cccagcttga atagtctgta aggcacctgt
    11401 atcttgatct acaaattgga ccaagccctg catatcaaaa tcatcggtca taatgacacc
    11461 ctcaaaacca agctcattcc gaaggatttt attgatttca ggtgaaatgg atgatgggac
    11521 atcatcaatg tcaggtacga tattgtgact gatcataatg gagtcagctc ctgcttcaat
    11581 accagcccta aacggaagaa aatcattaac ccgtaattct tctaaactgc gattgtcata
    11641 gaccaaatcc gtatgcgaat ctgcattgtc cccatagccc gggaagtgct tcaaggtcga
    11701 agcaaatcgt tcctctttca acaatgaaac caattgacca atatagtctg ccgtggtttt
    11761 cgcatcctgt ccaatggtcc tgtcgtagat aaaagatgat ggatcggtgg ataaatcagc
    11821 aactgggaag aagccagcat aaatcccctc accttttaaa agactggtct tctgcttggc
    11881 gtccgacaaa atcgcctcaa tgccgccaga ttggtacaat tccaaaggcg atggaaaagg
    11941 tgtttccaga agttgactaa tccgagttac cgtcccacct tcctcatctg aagccattaa
    12001 tagcggtact tttgaaagtg attgataaga agcaatctct tctttaacct gctccagtgt
    12061 cttaccttca aaatcagttg caaataagat atagccccca aaatgatagg tttccaatgc
    12121 ctcagtttgt cctgcagatg gcattcgagc aaaaatcatc tgtccaacct tttcttctaa
    12181 ggtcatctga tttagataat ttgcaatcac tttgtccctt gcagatattt cttggctaga
    12241 cgatgtcgtt acaactttgg tttgctcctt ttgtgttcga tctcccaaaa agaacaagcc
    12301 tagcataagc ccaataaaca agagacaggc gatacttgtc cctaacacat taaatctttt
    12361 tcgcatcaat ctccgacctc ttcgctatta tcccttaatt ctattcaagt actcctgata
    12421 ggtctctgtc tccatcaagg cctttgcatt ttccactcga gccttcgttg ggggcttagt
    12481 cccctctagt ggataaggtc tgcccagctc acgccactta aattcaccaa gattgtgata
    12541 aggtagcact tcaaaacgct ccacattatt caaagttttg acaaattttc ccaattcaac
    12601 caagtcttca tctcggtctg tcaagccagg caccaagaca tggcgaatcc atacaggctt
    12661 gccgatatcc gacaaataac gagcgcactc taaaatagtc ttattactat gacctgtcac
    12721 aatgcggtgt tgctcaggat tcatttcctt aatatctaag agcaccaagt ctgtcacttc
    12781 catcaagcga ttgtattttt ccaaatatct ctcggtcgaa cggaaggtca gagcacaggt
    12841 atccaaagta gtgtgaatcc ctttttcttt tgcaagggta aacagagcaa ttaaaaaatc
    12901 aatctggatg gttgcttcac cacctgaaac agtaatcccc ccttcttttc cccaaaacat
    12961 acgaaaacgc agggcttcat tcaagacatc ttctgccgtt ctctcagtcg ctgctggatt
    13021 gaccagatcc caagtatctg ggttatggca atactggcaa cgcatgtgac agccctgcat
    13081 aaagactaca aaacgtaccc ctgggccatc aaccgaacca aaactctctg ttgaatgaac
    13141 caatccagta accttacgat aatcaatttc tgtcatcatc tcaacctcat cacttaatat
    13201 gaatagtata ccacaaaaat gaaaacgctt ctatcattta ctttctttca taactatcac
    13261 cttccgtaag aagaaagcta aaagactagg ttgccctagt ccttatcggt ttcttctttc
    13321 tccagtggtg taatcaagag ttttaatttt gttacgcgac cattttttac cttatcgtta
    13381 ataagaacca ggtggtgatc tttactatcc acttcaaagg aaactttctc gtcttggctc
    13441 ggaatggtac cgactcctgt cagataataa ccagcaatcg tatcaacgtt atcactttcc
    13501 aactccatct caaaatgctc attgaagtca tttaaggtca tatttccttg gacgatatag
    13561 gtgttgtcag caatttctcg gacaaaaatt tctgtcttgt ccgtttcgtc atcaatttca
    13621 ccgacaattt cttccagcaa atcttccaag gtaacgagac ctgcaactcc accatactca
    13681 tctaacaaga tggccatttg attttgggta tttctcaacg atgtcaacaa atcatccacg
    13741 aaaatcgttt ctggaacaaa gagaggctcc tgcataatgc ggcggatgtt gagattgtca
    13801 aagccattac tgaaagcttc tgacaagatt ttcttggtat gaatcagacc aatgatattg
    13861 tccttatcgc catcataaac aggtatacgt gaaaaattct gcttgaggat agctgccatg
    13921 atggttgctg tatcatcctc aatatccacc atgaaagcat ccgtacgggg aaccattact
    13981 tcacgtgcca tcagctcatc taaagagaac acaccttgaa gcatttcgat ttcttcggca
    14041 tctaaggttt tctcactctt tgtcaaaata tattcaattt catcccgtgt catttgctca
    14101 tccgcatcat caaaattcat aggagtaata cggctgataa gattcgttgc agctgataat
    14161 aaccacacga acggactaac aatttttcca aggaaaataa tcactggtgc agtgactact
    14221 gccagatttt ccttcatatt catggcaatc cgcttagggt acaattcacc aagaacgatt
    14281 gaaacgaagg tcaacatagc cagtgcaagc cagtatcctg cggtttgcgc tgttgttgaa
    14341 ttccccatcc atttggcaaa tacagctccc aaatcattag ccaagctggc acctgaaagg
    14401 atggagatga aggtaatacc gacctgaatg gttgatagaa aattgttagg attttctaaa
    14461 acttgaagca agcgaatata cttcttctca ccgtctgcgg ccttttgttc cactcgagaa
    14521 cgattgaggg atacaagggc catttctgag gctgaaaaga aggcattgaa cagagtcaat
    14581 aagaataaaa tcaacagttg taaatagatg gtctgactac cagggtcttc catgatgttc
    14641 tcctataata aaatttataa catttccatt ataccacaaa ttctaaaatt taacatattt
    14701 cttgttataa ttagtccctc atgtctgttt atgttacaat aatcaaaagg aataggagag
    14761 caactatgat tatttcgatg aagaatgtcc actataaacg acaaggtaaa actattttag
    14821 aagacataaa ctgggaattt agaaaaggag agcgttgggc tattttaggg ctcaatggag
    14881 ctggaaagtc aaccctcctt cgtattttaa tggctgagtt ttggaagacc tctggtgatc
    14941 tgactgttct tggagtggag tttggtaagg gagatattcc tagcctacgc actaagattg
    15001 gggtcgttgg ttctttcctt gccgaacgct ttcccattga tttaacagct gagcagattg
    15061 tcctgaccgg aaagtacaaa tcctccatcc tctatcgtga atacggtcaa gctgaattgg
    15121 atgaagccat agacatgctc aaaaccatca aggctgatca cttgattggt cgtacctatg
    15181 ctagtttgtc acaaggagaa cgccaactcc tgctgatcgc ccgaagtttg atggaagagc
    15241 cggctatttt gattttagac gaagctactg taggcttgga ccttttggca cgcgaacgct
    15301 tactccacca catcgaccac atctgccagc tcccaacagc tcctgccatt atctacgtca
    15361 cccatcacgc tgaagaaatc actgacaatt tcacccatgt cctcctgctc aaagatggga
    15421 aagtcttggc acagggagca aaacaagata tcctgacacc tgaactcctc agcgattttt
    15481 atggcaatca ggtggaattg attgacttgg gtgagggaag aatgttcatt aagccgatac
    15541 tataaaaaaa acaaatccag ccctagtttg agctggattt taatcgttcc accatgacca
    15601 aaaacggtgg ggtattgact tgattgagcg gtttgtagag catggctgta aagacggtct
    15661 ggtctagctg accgacaaag tctaagactg catccttctc tagagctcca ccctcgtgac
    15721 catagtaaac catgatggct agacgaccac caaccaccag tctgtcaaga actttctcaa
    15781 tagcttgaag ggtggttgca ggcagggtga tgactgactt atccgccgaa ggaagatagc
    15841 ccagattgaa aatggctgcc ttgcattcct ctacatattg gtcgaggttt tcgtgtccag
    15901 tccaaaccaa ttgggcattg gtcaagccag ctttttctag tttttcagcc gttgtggtca
    15961 gggcttgttc ctgaatatca aaggccacca cttttcctgc tcgctgggct aaaaatagcg
    16021 tgtcatggcc atttcccatc gtcgcatcaa ccgctaggtc ctggtcggtt aaaatttcat
    16081 ctaaaaaggc atgagccatg tgtaaaggtc taagcatttt cactccttaa gctaataatc
    16141 ttacataata ttcggtcaag gtggcttcgt ccaccttttt gcgttgctgc aaccaccagc
    16201 tgaccgtctc cacaaaagtg gtcacaacaa aatgtaccag caaatcctct ggaagattcc
    16261 ccttgccctg catgtagtct tcaaccactt ttggaaaaat gtcgtgtttc agctccgctt
    16321 ccagttctct tagaaaatag gcattgcggg ataataaaag gctggcaact cggtcttgat
    16381 tggttcgaaa gtgtttgaaa atatgggcca acaaggtctt cacatccgca tcttcacgac
    16441 ctgtaaataa gtggtgaaag aggtcatgac aaagttcttc tagtaaagct tccttactgg
    16501 catagtgggc atagaaagtg gaacgcccca catctgccag gtcaatgaca tcctgcacgc
    16561 gcatgtcatc ataaccttta tcatttaata aggtcaaaaa agcctgaaaa atagctcttt
    16621 ttgtttttgc aattcgtcta tccatttttc gtacatttca aacaatttgt tcagaaaaag
    16681 acaaaccgtt tctcttgttt ctagtttttc ggctcattac agtacataat aaacctataa
    16741 acagtataac acagaaaggg aatctcatgt catcttctaa aaatacattt atcgcttttc
    16801 ttctcaatct cagcttttct atcatcgagt ttatctttgg ttggatcttt ggttccagcg
    16861 ctatcttagc agatgctgtt catgatttgg gtgatgccct cgccatcgga agctctgcca
    16921 tcatgcaaac ctatgccaac aagcccgctg acaagttcta tccttttggc tacaagagat
    16981 ggaatatttt ggctgctttc ttgacttcta gtattctgat tatcggatcc atcttgatcc
    17041 ttgtagaaaa cattcccaat cttttccatc ccaaccctgt caatcaagat gggatgctga
    17101 tacttgggat tatcgctgtc atcatcaatt tccttgcttc ccgtattgta aaaaatggcc
    17161 atagccataa tgaatccatt ctcagcttgc actttttaga ggatattttg ggatggctgg
    17221 cggtcatcct tgtttccatc attcttcaat ttactgattg gtactttcta gacccacttc
    17281 tctcgttctg tattgctatc ttcatcctct ccaaagccct gccaaaagcc tggaatagtg
    17341 tcaagattct acttgaaaca agtccgcaag gagtaaatct tgaagaagtg aaagaaattc
    17401 tcctcgctct tgaaaatgtt cacgaaatca ctcaactgaa tgtctggacc atggatggat
    17461 atgaccattg tgcgacagtg acggtcaaac taacaaatcc tgctgtagca gacaagacca
    17521 aagcaaaaat acggaattct ctcatcacct ttggcattgt ccaaagcacc atcgaaattt
    17581 tgtaaaaaaa ttttttaaaa atatctcatt ttcctctccc atttgcgaat aaataagtat
    17641 gaagacaatt atcctatttt tccttggagc ttctatcggc tccttcttgg gattggtcat
    17701 cgaccgtttc cctgaacagt ccattatcgc accctctagt cactgcaagg cctgcaagcg
    17761 acggctcaag gcctgggacc tcataccaat cctgtcccag ctttccacaa aatccaaatg
    17821 ccgttactgc aaggcgaaga taccttattg gtatctggga ctagaattct tagctggtct
    17881 agttgtcctg ctctgccatt ttcaagtcct aaacctaacc gaaaccattc tcatcttggc
    17941 aggactagtt ttgaccattt acgacatcaa acatcaggaa tatccttttg ctgtctggct
    18001 catttttact tttatagctc tggtactctc ccagctcaac tggctcttct gtggcttttt
    18061 actcttggcc tatctgactg aaaaatggca aatcaatatt ggttctggtg actttctcta
    18121 tctggcaagt ctatcacttt tgtttggctt tacagaaatt ctttggatta ttcagcttag
    18181 ttccctccta ggacttcttg tcttcgccat tttcaaaccc aagtctattc cctacgtacc
    18241 actccttttt ctttcaagta ttcctatcat tctgtgcatc taaatcgagt ttttctcgat
    18301 ttttttgtta taatagaagg catattagag ttcaactcca tcaaaataat tggagtgcct
    18361 tcttgatcgg aaggcaaaag gagaaacgtt atgacgctat ttaaggatga cagtttaacc
    18421 ctgcataccg acctttatca aatcaacatg atgcaggtct attttgacca aaacatccac
    18481 aataaacacg ctgtattcga agtctatttc cgttcacaac cttttaaaaa tggctacgct
    18541 gtatttgccg gtttggaacg cgttgtaaac tacctcaaca atctcagctt tagccagaca
    18601 gacattgact atctgacaga actaggttat ccgcaggatt tccttgatta cttgtcccaa
    18661 ttggaaatga ctctcactgt ccgttcggct aaggagggcg acctggtcta cgctaacgaa
    18721 cccattcttc aaatcgaagg accattggca caatgccaac taatcgaaac tgccctctta
    18781 aacatcgtca actaccaaac cctaattgct acaaaagctc gccgtatcaa ggctgtcatt
    18841 gaagatgagc ccttgatgga atttggaacc cgtcgtgccc aagaaatgga tgctgccatt
    18901 tgggggaccc gtgcagcctt tatcggtggt gcttctgcaa catccaatgt tcgagctgga
    18961 aaaatcttcg gcatcccagt cgctggtacc cacgcccacg ccttggttca agcctacgga
    19021 gatgattata aggcttttaa ggcctatgcg gaaacccatc atgattgtgt cttccttgta
    19081 gatacctatg ataccctacg aatcggtgtc cctgcagcca tcaaagttgc taaggaaatg
    19141 ggagataaaa tcaatttcaa aggggttcgg attgactctg gcgacatggc ctatatttcc
    19201 aagaaagtcc gtcagcaatt agatgatgca ggttttacag atgcgaagat ttacgcatct
    19261 aatgacctgg atgaaaatac catcctcaac ctcaaaatgc aaaaggccaa gattgatgta
    19321 tggggagtgg gtactaagtt gattactgca tatgaccaac ctgccctggg agcagtctac
    19381 aaaattgtat ccatcgaaga tgaagatgga aatatgcgtg acaccatcaa gctgtcttct
    19441 aatgcggaaa aagtctccac tcctggtaag aaacaggttt ggcgcatcac ctccaaagaa
    19501 aaaggaaaat cagaagggga ctacatcacc tttgcagaca ctgatgtcac acagatggat
    19561 aatatctata tgttccatcc aacttacacc tacatcaata aaaccatcga gaactttgat
    19621 gcccgtcctc tcctagttcc tattttcgaa aaaggaaaac aggtctatga acttccaagc
    19681 ctagcggaaa ttcaaaccta tgccaatcaa gaatttgata aactctggga tgaatacaaa
    19741 cgcgtgctca acccacagct ctatccagtc gacttggcac aagatgtttg ggataataag
    19801 atgaacctca tcaatcgtat tcgcaaacaa actcagacca aatccatcta agaaaggtat
    19861 gttatgaccc tacaggaaac aatcatcaaa gaattaggtg tcaagccaag cattgacccc
    19921 gaagaagaaa tccgtcgctc catcgacttt ctcaaagact atctgaaaaa acatcccttt
    19981 ttgaagacct atgtcttggg gatttctggt ggacaagatt cgaccttggc tggtcgtttg
    20041 gcccagttga ctatggaaga aatgcgagcg gaaacaggtg acgattctta tcaatttatc
    20101 gctatccgcc taccttacgg cgtgcaagct gacgagtctg acgcccaagc agccctagcc
    20161 tttattcaac cagatgtcag cttaaccatc aacatcaagg aatcaacaga tgccatggtg
    20221 gctgcagtca atgccaatgg gcttgctatg tctgatttta ataagggaaa tgctaaagcc
    20281 cgcatgcgca tgattgccca atacgctatc gctggggaac gcaagggggc ggttatcgga
    20341 accgaccatg cagctgaaaa tatcactggt ttctttacca agcacggcga cggcggtgca
    20401 gatattctcc ccctcttccg cctcaacaaa cgccaaggaa aacagcttct agctgaactg
    20461 ggggcagatg aaaaactcta cctcaaagtc cctactgcgg acttggaaga agacaaacct
    20521 ggccttgctg acgaagtcgc acttggagtg acttacgagc aaatcgatga ctacctagaa
    20581 ggcaaaacca tcgaccctca agcccaaacc attatcgaag gatggtggaa caaaacagcc
    20641 cataaacgcc acctgccaat tactattttt gatgattttt ggaaataagc aaataacccc
    20701 tgacgataag caaccgtcag gggatttctt ttatctattc tccaaataat ccgcaatcgc
    20761 tgcgacatcc ttgtctcctc gaccggatac attgataata atgattttat ctttatctag
    20821 ttgtggtgct aatcgaatag cttctgcaat cgcatgagaa gattcaatgg ctggaagaat
    20881 tccttctgta cgacttaagg tcaaaagagc attaacagcc tcatcatctg ttgctgcgac
    20941 ataattaaca cgaccagttt ccttatagtg agcatgctct ggaccgacac ctggatagtc
    21001 caaaccagct gagatcgaat aaacaggtgc aactccacca ttttcatcaa aaagggagat
    21061 tgtcttcatc ccatcaacaa caccaactgt tcccttagtc atagtcgccg catgcagttc
    21121 tgtatcaact cctttaccag cagcttctac accgataagc ttgactgact catctggtaa
    21181 atattgagaa aatgcaccga tggcattgga accgccaccc acacaggcaa taacgtagtc
    21241 tggcaaacga ccttcttttt ccagaatttg acgccgagat tctagactaa taatcttttg
    21301 aaactcatgg acaatggttg gatagggatg aggaccgact gctgatccca aaacatagaa
    21361 ggcatctaaa tctgccatcc aagcaccgaa tgccgcatca actgcttctt tcaaggtttg
    21421 agttccatcc gttacagcat gaacacgcgc ccccatcatc tccattcgga aaacattaag
    21481 gcgttggcgt ttgacatctt ctgcccccat ataaacatca cagcccaaac caaatcgtgc
    21541 cgcaacagca gcagtcgcaa ccccatgttg accagcacca gtttctgcaa tcactcgagt
    21601 tttccccatt ctttttgcca acaaaatttg ccccagcaca ttgtttaact tatgagagcc
    21661 taagtgattc aaatcttccc gtttgagata gattttcgct ccaccaagct ccttgctcaa
    21721 tgattccgca aaatacaatg gcgtttcacg accagcataa tctttcagat aagcttggta
    21781 ttccgccaaa aattctggat cattgcggta ctgttcaaac gtctcctcca actgatccaa
    21841 caaaacctga atttgctctg gtacaaaact accaccaaac tgtccaaaat aacctttttc
    21901 tgtcatataa ttccctcttt ctatttcctt tattctgaga tttttctact aacaacatcc
    21961 atcatttatt aaaaattgct acgccatcgt ttcatattgc ttacctcgta atatctatca
    22021 tcatcgaaat agattacttt tttgataaga gaccaaggcc agacataaat caagttagac
    22081 aagctgatcg tgacaaaata taaaagcaat ctacaaagac aatgaaaaag cccacgcagg
    22141 aaaaaacatc ctgcgagggc gtcaatgaca cggtaccacc tcacttatgg actcgactag
    22201 aaaagtccat aactttttct cctctaacaa ggaggcgcac gataaggggt gcggaccgaa
    22261 ttctcattgt ttcgaattca cttacccaaa cgtaaaccag aaaatgatat tgaaaatatt
    22321 tcctacattt ggtatcagtc catttcataa acttctagca tctattcaca ccacccatag
    22381 actctctaaa gctaaaccat tta
//
LOCUS       DASGAC010000016        21460 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.016, whole genome shotgun sequence.
ACCESSION   DASGAC010000016 DASGAC010000000
VERSION     DASGAC010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 21460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21460
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.016"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            42..1682
                     /locus_tag="U1335_000484"
     CDS             42..1682
                     /locus_tag="U1335_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEM5230992.1"
                     /translation="MSEKVEMQQSKEQATMARGLAWLTAGNILSRLLGVAYVIPWYIW
                     LGEYRAEANALFSMGYQIYANFLLISTAGLPTAIAKQVAKYNVLGKEEVSLYLVREFF
                     KLMLVFGAVFAGVMYLSAPWLADASGSKEKLLPVMYSLVPPLFIFPAMSILRGFFQGR
                     HDMKPYAISQLAEQLVRVIWILAATFMIMKLGSGDYLEAVVQSTFAAFVGMIASVGIL
                     VYTLWKQGYLGKLLHAKKQKISLDTGQLIKETVRDAIPIIILGLTIQLLQFIDQVTFI
                     RVMERITDYSNSELLELYSYMAANPSKITMMIIGISLSLGSVAIPLITEKFVKKDLKA
                     ASHLVADNLQLLFIFTIPAIVGTVLLAGPLYTIFYGPSEPIVITLFIWNLFLILPLGL
                     YSVISVVIQAIFENRRAIYYFLIGMLVKIVLQVPMIYIFKVYGSFISTIFGLGIMLYL
                     FYRRIDKVLHIDERLVIKDIATISWISIVMGLIVWGIEFVLNLILPANGYVSSFIHLV
                     VAGGAGILVFVILTLKTRQLDRLIGSRAQSLRRKLRLG"
     gene            1849..2583
                     /locus_tag="U1335_000485"
     CDS             1849..2583
                     /locus_tag="U1335_000485"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004253279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEM5230993.1"
                     /translation="MMKPKYERILIKLSGEALAGERGVGIDLKTVQEMAKEIQEVAES
                     GIQIALVIGGGNLWRGEPAAEAGMDRVQADYTGMLGTVMNALVMADSLKQLGVDTRVQ
                     TAIAMQSVAEPYIRGRALRHLEKGRIVIFGAGIGSPYFSTDTTAALRAAEIEADAILM
                     AKNGVDGVYNADPKKDANAVKFNELTHREVISRGLKIMDATASTLSMDNDIDLVVFNM
                     NEPGNIKRVVFGEPIGTTVSNSSEEK"
     gene            2718..3275
                     /gene="frr"
                     /locus_tag="U1335_000486"
     CDS             2718..3275
                     /gene="frr"
                     /locus_tag="U1335_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006148672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEM5230994.1"
                     /translation="MSKEIIAKAQERMNQSHQSLAREFSHIRAGRANASLLDRISVEY
                     YGSPTPLNQLAGITVPEARVLLITPFDKSILKDIERALNASDLGLTPQSDGTVIRLVI
                     PALTEETRKNLAKDVKKVGENSKVAIRNIRRDAMDEAKKAEKAKEITEDELKTLEKDI
                     QKVTDDAIKTIDKMTADKEKELLEV"
     gene            3407..4261
                     /gene="cvfB"
                     /locus_tag="U1335_000487"
     CDS             3407..4261
                     /gene="cvfB"
                     /locus_tag="U1335_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001095445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding virulence regulatory protein CvfB"
                     /protein_id="HEM5230995.1"
                     /translation="MNDLLAQYIVGLVTDENDQFYFVQKEGRTFALSKDEGEHSLGQS
                     VKGFAYTDMKQKLRLTTKEVGASRTSFGWGTVTEVRKDLGVFVDTGLPDKQVVVSLDI
                     LPEIKELWPKKGDRLYVKLDVDKKDRIWALPAFQEDFQKMAGPAYDNMQNQNLRAIVY
                     RLKMNGTFVYLPDNNMLGFIHPSERFAEPRLGQVLEARVIGYRAVDRTLNLSLKPRSF
                     EMLENDAQMILTYLESNGGFMTLNDKSAPEDIKATFGISKGQFKKALGGLMKAGKIKQ
                     DYFGTELV"
     gene            4271..5191
                     /locus_tag="U1335_000488"
     CDS             4271..5191
                     /locus_tag="U1335_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000964166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HEM5230996.1"
                     /translation="MLVYIAGSGAMGCRFGYQLSKTNHEVILLDNWEEHIEAIRENGL
                     KVTGDVEETIQLPIMKPTEAAREADFIILLTKADQLPKMLRDIKPIIGPTTKVLSLLN
                     GLGHATTMRRYVPDESIMVGVTMWLAGLKGPGHAHLEGPGSMSVQHILGDEQSVADII
                     EMLNEAGLNVTYDNHVVSAIWQKACVNGVMNPTCTILDCTIGELFGTEAGLNLVQGIF
                     KEFIAVAKSEADGIDEEAIWKYVIDASKKASNHYPSMHQDLVQHGRKTEIDYLNGAVV
                     FKGKRAGIPTPYCQMITDMVHAKESMLGLR"
     gene            5201..5656
                     /locus_tag="U1335_000489"
     CDS             5201..5656
                     /locus_tag="U1335_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HEM5230997.1"
                     /translation="MLIEVDTIEEYMAALPENRKEVVERLHQVIVEQLPAGFEVGILG
                     GMINYYVSLAAYPDGYHCTPGEPLPFLALASQKAHIALYHMGIYMDQELNDWFVAAYQ
                     AQVPTKLDMGKSCVRMKNPKNIPYELIGELVSKMSMERYIELYEKNHRK"
     gene            5662..5877
                     /locus_tag="U1335_000490"
     CDS             5662..5877
                     /locus_tag="U1335_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001232073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YozE family protein"
                     /protein_id="HEM5230998.1"
                     /translation="MRRSFYSWLMTQRNPKSNEPVAILADYAFEEVDFPKQSDNFDEV
                     SRFLEESASFAFSMSDFDAIWEDYLGH"
     gene            6029..14614
                     /locus_tag="U1335_000491"
     CDS             6029..14614
                     /locus_tag="U1335_000491"
                     /inference="COORDINATES: protein
                     motif:HMM:NF017180.1,HMM:NF019142.1,HMM:NF019216.1,
                     HMM:TIGR01168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G5 domain-containing protein"
                     /protein_id="HEM5230999.1"
                     /translation="MHKFFYEQRKAFSFRKLTIGLVSLCVGTSLLFGIQSQEVSASTV
                     SPSQIRFEYVLEAELSAEERQLIQSSLPAELKEEVTYFVVYRPSKKVLPATGELAGSG
                     LAVLGLGFLVLAVSATKSKKARVLTMLYVTTSGLALPVLEVGAVQSSALAAYNQNITI
                     RPGDSLPDGKLRLDGYEFVGYYVQESSVKTSLPSSETEKNDAAKGTQASSAQSEGKKS
                     DLEELAKPSVLQENSESQLSNRDDSLQLPLKESSVEKTENTVSSETTNSQTGDGLASP
                     SNTSTVADKKEDSPNTEESQNSGLDSTLQIPGLLILNRKDRTDAVTEVAPVGQALPFV
                     AFRKEKETFALELVKQEDPQLEIGKSRLVPGQEGEKEITYADFVQGEKLLRSEKISEQ
                     ITKNAVAPIMYVGTKQVEAPVIPLPEVPSSPKVESEISDAGSTDANSSASQHTEQPKP
                     STPDSAVDLPVPPQPEVRPEVDVPVPPQPETTPETEEPVAPQPEVVPETEVPVSPQPE
                     LAPETEEPVSPQPEVAPETEVSVAPQPEVVPETEVPVSPQPEVVPETEEPVAPQPEVV
                     PETEEPVSPQPEVVPETEEPVAPQPEVVPETEVPTTPNTGSTDATSGASQHGESNEHP
                     TSQELTEAEIQCILDPSSTCWPEKEEKVDPKVQAQQIEEAAAKLREKMEELQTYKSRF
                     KGKEWTDYINTVYEASRAILEARDLADMLIQTSLIEDDLRFLLVETDANSGASQKTEG
                     ELIFELPTSTSETVTPPLTPTTPDSSGSTTPKPSDSTTAPSTETEEGFCPIDSKPEET
                     CGPETSPTEETPSGEGSSTSGSSGETNSSETNPSTSTIPDSSGSTTPKPSDSTTAPST
                     ETEEEFCPIDPKPEENCGVESEPQKEIVSQVEVESTKDVSFIRRYESNDQLEFGETRT
                     KQIGQVGQEKVIETYRLVNGERRERLSIRTENVRQAREEIIEVGTKPTVTKTPIRFTE
                     KEIADGNLYVGDRVIEVHGVDGERTVTTSYRLNTQTGETQPEQPVVTEVAAKEQKVRI
                     GTKPVDETRQVIQDTVVKFTTEFESDVNLSYPETQEITPGKDGLNRTIITRRYIRGQE
                     VGQPSQEKLTITPVQNRRVKVGIKPESRIVETPFQTVYEADSSRQLDTRHTRQEGVNQ
                     QITYTKTYSMNSETGQVTAQPETGRLTRQGQNKIIQVGTRPTERTEEIVLETIRRDNS
                     ELEKGTEHVIHVGSPTIRVYRTNYSVDPTTGQITTHPEVLVSETEGRAREVEIGTKEP
                     EQPVTPPTENEESCPIIPDNSDGGTCEVPTEPTEKPSSPDLECILNPTDQCWPEEEET
                     VNPKTVAQLRAKMDELRSYKARVEGYEWHTYIDTVYKHSEDMITSGNPANIRTQLEVI
                     QDDIDFIVDLLTDLGNPKVLVETDANSGPSLKFEVMAKPVNVPTDANSSPSRKNEDTT
                     SPVTPKPEETTGTEKPEPDSPTNPPVTPTPNPEQPTVPDTPDTTEMETPIDVDIDSLP
                     KPTMFIRKVDIQKDARKAIIHYILEDSAERFEGGQAHLFVNDKIVSTVPIRRQNGKVQ
                     AEFTDLKPNVDYLVRTDLTYSGTSESLVDSLADEASIEIEERQLQIKHIDRIELWKFE
                     NGKASIQRELATRPVNLTNYFAKVISSQQKEILLPISQVDLQSENGESFYLIKASLDN
                     LVEEQSTSNSYSPGLTFRVAKQKTSTSTGTYTDFASLVRAMQERPWDTFTLGADLTAS
                     TMDVTGKDSYITGEFTGTLNGAGYTVYDLQAPLFHKTSGRIENLNLKDVTIHQKDKKE
                     VGALAKEAKGGRIENVRVEGSVTGGNHVGALVGIATNTQMTNVGIKARVSSQSTETTD
                     NYVGGLAGWIGQGGQAQRIHTDVLLTSNSERARIGGIVGQMEGANASVRKAYAKGMIS
                     APKTINSEIGGIVGTIVGSSNSIIEDVISAVNVPNGRKVYHSVTDEKLQVGKNYAVTG
                     EASGQNNSKQEHLEASQVDGKLTEYGIQSRDTDARNHSFVSAKVDINYRTHPHYQENR
                     QLAYENMEKLLPFFTKDVIIQQANRLSLKDKLVTKKLLDVVAIDGHNKNRPVFDTQGQ
                     KQYINKVMFHFEDGSIDYDWLVKKQDLNSGAITEYYVVDREVTYTPENMVSATHLDQL
                     LTRLLPEFDSLTYSSKEVLDVLGLTDSPNDYAIKELLFLKESFGKVKANIRQHMRDLL
                     VSNHAINLTSQVTEDYTFNYIKNNKVQLLLGLAYMDRWYNIQFGATNAKDWMTKKADF
                     FGNSASSLNQLITLGDLGAGALKPNNNFALGSQLIAKPAVNGDLFAYLEAYRKRFAPE
                     MSDSDWFKSATKANIIETNSTVEEVRAKQEDANNKKYSNRFYDKLKSDTWSFKEMALI
                     LLTMPERNIFILTDMANTLIGSYDNQSGTSEEIEKAIAKTAKTWAGHADYLYRILPSG
                     HKEKVFRQIITWDNRRLKGSWRPIDSLSSRDVPSMKDFYMPLGYSFPYGTGATAQSDL
                     KDIFYSNADAIGNEGARIYTHELTHVADDDTFLLGHGRRSSMEFEVYARGLFETINWF
                     DQDILGFNTIYDFSEYEKNSYGRRLTNLNPERFQSTQDLEQYMKGYLDLIYTLDYLEG
                     EAVLSLAGDNTLNTARRNWFNKLDTKEGNAAWIEKFRRAAQFKTIDELIDNGMVSRRS
                     YDPDGHSDNELFPGNSYLTVNALNPIYGAMNNDGPSRNEFEFRKIAFELLAEKGYENG
                     FVPYLSNQYKAELGQADPADRISDNQLISKITDGVYADSKAFRKDMFKRRKEKLDQLK
                     PVTIYGKSDGEGYYYSASRQVESVQDLRQLMKEAVEYDAHRSLYASQKLYASQANGYN
                     KTDSRVYSLKAAILNGYLRATDDFRESIYKEKP"
     gene            14738..15760
                     /locus_tag="U1335_000492"
     CDS             14738..15760
                     /locus_tag="U1335_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HEM5231000.1"
                     /translation="MLEHSIDIHLKHPDDLFSLFGSNERHLRLMEQELGVVIHARTEV
                     VQVIGQETQVEQARLVIQSLLVLVNRGLVINTPDVVTAISMVKNDEIEKFVALYEEEI
                     IKDNYGKPIRVKTLGQKLYVDSVKRHDIVFGIGPAGTGKTFLAVTLAVTALKRGQVKR
                     IVLTRPAVEAGESLGFLPGDLKEKVDPYLRPVYDALYQILGKEQTTRLMEREIIEIAP
                     LAYMRGRTLEDAFVILDEAQNTTIMQMKMFLTRLGFNSKMIVNGDISQIDLPRKVKSG
                     LIDATEKLSKIPQIDFVHFSAKDVVRHPVVAQIINAYEEEARAADSRASFETIGELKK
                     EQDAEE"
     gene            15821..17836
                     /locus_tag="U1335_000493"
     CDS             15821..17836
                     /locus_tag="U1335_000493"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013590.1,HMM:NF017464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HEM5231001.1"
                     /translation="MIKQGLLRLVLLGFSCLLAACGGQKIRDDQTQVEKAEPTIQTNF
                     YQAINKDWLNGGWLSSGTPFYNEFTRLQMEVDEQLKSDFDKMVAGQLEPQSEDLVEFI
                     KLYQQGLDFTKREEDGVRVARMILDEMMGITSFSELKSLSQDWIRKDYPLPYGLDVIA
                     NPRNTSERMLILLPPQTILPDKSYYEDRTVREKLMDSYRISARHILEKCGYSDEEATA
                     LVEGAIAFDNRLVDTLPASENVHSDWGPVNAEELRTFSEVKNYSPALSIGEQLVGLVG
                     LEPGEVYVSNPSYFEQLSQFIKEENFSEYRSWALVSQAMKLAPYLTGEIMQTAGRFHA
                     EVQGVSASYPNDYMTYLDVTGMFKESLGVYYGHNYADETDLLAIQEMAEAISRTYQER
                     ILANKWLSQATKQAAIKKLENITYHIGYPRELSDWTKSLKVREDLSYIENVLAITIQA
                     RTGVFERYSQPIDRQTWASNVSASEVTAAYAPSQNAIYIPAAILQAPYYDKNQSVAEN
                     YGGIGKIIAHEFVHAFDATGANFDETGSLKDWWTERDGLAFEEKNQALVDLFDGLEVY
                     GGRINGQQTLSENLADLGGIQIALATLKKEEPSANLKEFFEHYARSRREMVAVDYGRY
                     QLLVDTHSPEEFRVNIQLQQMDDFYKVYHIQEGDPMYRAPEERLVMW"
     gene            complement(17881..18519)
                     /locus_tag="U1335_000494"
     CDS             complement(17881..18519)
                     /locus_tag="U1335_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM5231002.1"
                     /translation="MIIHKSVNPVAFQNTYYLENDTHLIIIDPGSDWGKIQATIEKIG
                     KPISAILLTHTHYDHIMSLDILRESYDFPPVYVAESEADWLFTPEMNLSGLPRHDDME
                     NVVCRPAEKIFQYQEDYQFDGFHFKVVPTPGHSIGGVSFIFPEDECIITGDALFRETV
                     GRTDLPTSNFDDLITGIREHIFTLPNHYTVHPGHGQNTSVGHEKNFNPFFRL"
     gene            18582..21095
                     /locus_tag="U1335_000495"
     CDS             18582..21095
                     /locus_tag="U1335_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DnaQ family
                     exonuclease/ATP-dependent helicase"
                     /protein_id="HEM5231003.1"
                     /translation="MEFVWSFFHEREYAIMNSMTDTRTSNRYAVVDLEATGTGTDAKI
                     IQIGIVLVENGEIIDSYATDINPYELLDDHIKNLTGITDQQLSQAPDFGQVASTIYDM
                     IGDAIFVAHNVKFDANLLAESLFFEGYELLTPRVDTVELSQLFFPTFEKYSLGNLAEH
                     LDLGLDQAHTAISDAMATARLLIKIQEKIKSLPRTVVDKILDLADNLLFESRLVIDEM
                     VPYLAETMSTSLESIHGLVLKKPVKDQPAYHLSEDFATNIALLGLHERKKQTAFAQVV
                     EKRLADVEQVHFIQAQAGLGKTYGYLLPLLAKSDQPLLVTVPTKLLQEQIMEKEGSKL
                     REIFHISMVSLKSPKHFIKLDSYWKTLQRQDDNRLVNQFKMQVLVWLCETTTGDLDEL
                     KQKQRYQAYFDEIAHDGKLEPESLFWGWDFWQRLNQQALSSRLLITNHAYFLNHLKDQ
                     DPLMDKRLVVIDEAQKFLLAAENLATDSQDITALLQVLQSKKDKSDSLLDQRLYESCQ
                     FELNHLLTRFRQHGQREVSKDELGQVKQNLAELQDVDLQDLDQLLDVYDHFWLEEKYL
                     EDKRLAYLRGSKDSLLNATNYLPDTKIFCISATLTISKKVSLADLLGFEQVTMDLLPT
                     QAVTNQQLLFPTHLPDILAWTKEEHAAYLATTLGEIAELGRPILVLFTSISLLLQVSD
                     LLEGSNIPHLAQHKHGQEMTLKRKFERGECQILLGTGVFWEGVDFASQDQLVQVITRL
                     PFDNPKDRFVQKINHHLREEGKNPFYDYSLPMMMIKLKQAIGRTNRHDKQDSLVLVLD
                     PRVHTKRYGQQILSFFEKDYSMLSVDAKEIEGAIQDFFE"
BASE COUNT         6528 a         4055 c         4980 g         5897 t
ORIGIN      
        1 agtttttcct gtcttatatt tacatagaaa gtaatagaaa aatgtccgaa aaagttgaaa
       61 tgcagcagtc caaagaacag gcgacaatgg ccagaggttt ggcttggttg actgctggaa
      121 atattcttag tcgcctgctt ggtgttgcct atgttattcc ctggtatatt tggttagggg
      181 aatatcgagc tgaagccaat gccctcttta gtatggggta tcaaatctat gccaacttct
      241 tattgatttc aacagccggt cttccgacag ctattgctaa acaagtagct aaatacaatg
      301 tcttgggtaa agaagaggtg tcgctttact tggtcagaga attcttcaag ctcatgttgg
      361 tctttggagc tgtctttgca ggggtcatgt atctaagtgc tccgtggttg gcagacgcat
      421 cggggtcgaa agaaaagtta cttccagtca tgtatagtct agtcccgcct ctctttatct
      481 tcccagccat gagtatcttg cgtggttttt tccaaggtcg gcacgatatg aagccctatg
      541 cgatcagcca gcttgcagag caactggtac gggttatctg gatactggca gcaacattta
      601 tgattatgaa gttgggtagc ggtgactatc ttgaagcggt tgtccaatct acctttgcag
      661 cttttgtcgg gatgattgct agtgttggga ttttagttta tactttatgg aaacaaggtt
      721 accttggtaa gttacttcat gctaagaaac aaaagatttc tttggataca ggtcaactta
      781 ttaaggaaac tgttcgagat gcgattccaa ttatcatttt aggtctaacg attcaattat
      841 tgcagtttat tgaccaagtc acgtttattc gtgttatgga aagaattacg gattacagta
      901 attcggaact tttggaactt tattcatata tggctgccaa tccaagtaag attacgatga
      961 tgattatcgg gatttcactg agtttgggaa gtgttgctat tccattgatt acagagaaat
     1021 ttgtcaagaa agatttgaag gcggcgtctc atttagtggc ggataatcta caattactct
     1081 ttatattcac tataccggca attgttggaa cagtcctgtt agctgggcca ctttatacga
     1141 ttttttacgg accgtcagag cctattgtca ttactctatt tatttggaac ttatttttga
     1201 ttttacctct gggactatat tctgtcatta gtgtggtcat tcaagcgata tttgaaaata
     1261 gaagagctat ttattatttc ttgattggga tgctagtgaa aatcgtttta caagtaccaa
     1321 tgatctacat ttttaaggta tatggtagct ttatctcaac gatatttggg ttgggaatta
     1381 tgctgtacct cttctataga cgaattgaca aggttctgca tattgatgaa agactagtga
     1441 taaaagatat tgcaaccatt agttggattt ctatcgtaat gggactcatt gtatggggga
     1501 ttgaatttgt cctgaatctt atccttccag caaatggcta tgtatctagc tttatccact
     1561 tggttgttgc aggtggagca ggtatacttg tctttgtcat cttgacattg aaaactcgtc
     1621 agctagatcg tttaattgga agtcgggctc agagtttacg gaggaaattg cgcctaggct
     1681 agtttgtttt aaaaatctct attttctact attgaaaagc tgggaaaaag aggtgtttta
     1741 gaatgtgaga aggaaagttc gttgaggatt ttcctttttt cttggagatt tcagtataaa
     1801 aaaaacggtt tttgtggtag aatagtaggg ataaaaaaga ggagagagat gatgaaacct
     1861 aaatacgaac gtattctaat caaactatct ggtgaggcct tggctggtga acgtggtgtc
     1921 ggtattgacc ttaaaactgt tcaggaaatg gcaaaggaaa ttcaggaagt cgcagaatca
     1981 ggtattcaga ttgcccttgt tattggtggt ggtaaccttt ggcgtggaga acctgctgct
     2041 gaagcgggta tggatcgagt tcaagcagac tatacgggca tgttggggac tgttatgaat
     2101 gctcttgtaa tggctgattc ccttaaacag cttggtgtgg atacacgtgt gcagacagcg
     2161 attgcgatgc agtcagttgc agagccttat attcgtggtc gtgctcttcg tcatcttgaa
     2221 aaaggtcgca ttgttatttt tggagctggt attggttctc cgtacttctc aacggatacg
     2281 acagcagctc ttcgtgctgc agaaattgaa gcagatgcga ttttgatggc taaaaatggt
     2341 gtggatggcg tctacaatgc tgatccgaag aaagatgcta atgcagttaa attcaatgaa
     2401 ttgacccacc gtgaagtgat tagtcgtggt ttgaaaatca tggatgcgac agcatcaact
     2461 ctctcaatgg acaatgatat tgatttggtc gtgttcaata tgaatgaacc aggaaatatt
     2521 aaacgtgttg tcttcggtga gccaatcggt actaccgttt caaattcttc agaagaaaaa
     2581 taaatcatat tgtcatttag tttttctttt attacttcgt taattcgcct tacctaactt
     2641 cggttatacc tgtggctcgt tgcctagtgc taaaagtaaa ctaaaagact ataaaaaaat
     2701 acaaagaagg aagtcttatg tctaaagaaa ttattgctaa agcgcaagag cgcatgaacc
     2761 aatctcatca gagtttggca cgtgaattca gccacattcg tgctggtcgt gccaatgcta
     2821 gtttgttgga ccgtatttca gttgagtact acggttctcc aacgccattg aaccagttgg
     2881 ctggtattac agtgccagaa gctcgtgttc ttttgattac tccgtttgat aagtcaatct
     2941 tgaaggatat tgagcgtgct ttgaacgctt cagatcttgg tttgacaccg caatctgacg
     3001 gtactgttat ccgtttggtt attcctgccc ttacagagga aactcgtaag aacttggcga
     3061 aggatgtgaa aaaagtcggt gaaaattcaa aagttgccat ccgtaatatc cgtcgtgatg
     3121 ccatggatga agctaaaaaa gctgaaaaag caaaagaaat cacagaagac gagttgaaga
     3181 cgcttgaaaa agatattcaa aaagtaacag atgatgctat caagacaatt gataaaatga
     3241 ctgccgacaa agaaaaagaa ttgttggaag tttaatcaac acgtttttag actacaaaaa
     3301 tagatcatca ctgggctgtc taacttccag tggtgaacca ataagaaatc taatgggggg
     3361 agttagacaa gacttccccc actttttaat cagaaagaag aaaatcatga atgatttatt
     3421 agcacaatat atcgttggtt tagtgactga cgaaaacgat cagttttact ttgtccaaaa
     3481 agagggtaga acctttgctc tttctaagga tgaaggagaa catagtctag gtcaatctgt
     3541 taagggattt gcctataccg atatgaaaca aaaactccgt ttgacaacta aggaagttgg
     3601 ggcgagtcgt accagctttg gttggggaac tgttacagag gtacgtaagg atttgggtgt
     3661 ctttgtggat acaggtctgc cagacaagca agtggttgtt tccttggaca ttttgcctga
     3721 aatcaaggaa ctctggccga aaaaagggga tcggttgtac gtcaaattag acgtcgataa
     3781 gaaggaccgc atttgggctc tgccagcttt tcaagaagat tttcagaaaa tggctggacc
     3841 tgcttatgac aatatgcaaa accaaaatct gcgagcgatt gtctatcgtt tgaaaatgaa
     3901 tggtactttt gtttatttgc cagacaacaa catgcttggt tttatccatc cgagcgaacg
     3961 ctttgcggaa ccgcgtctgg gtcaggtttt ggaggcgcgt gtcatcggct accgtgcagt
     4021 tgatcggacc ttgaacttgt ctctcaagcc acgttcattt gagatgctgg aaaatgatgc
     4081 tcagatgata ttgacttatc tggaaagcaa tggaggtttc atgaccttga acgataagtc
     4141 tgctccggaa gacatcaagg ccacctttgg tatttccaaa gggcaattca aaaaagctct
     4201 tggtggtttg atgaaggctg gaaaaattaa acaggattat ttcggaacag agttggtata
     4261 ggaggcatct atgctagtat atattgctgg tagtggagca atggggtgtc gttttggtta
     4321 tcaattgtct aagacaaatc atgaagtgat tttgctggat aattgggaag aacatatcga
     4381 agcgattcga gaaaacggct tgaaagtgac tggagatgta gaggaaacga tacagctgcc
     4441 tatcatgaaa ccgaccgaag cagcgagaga agcagatttt atcattctat tgacaaaggc
     4501 tgatcagttg ccaaaaatgt tgcgggatat taaaccgatt atcggtccaa ctaccaaggt
     4561 tttgagtctc ttgaatggtt tggggcatgc gacgaccatg cgtcggtacg tgccagatga
     4621 aagtattatg gttggggtga ccatgtggtt ggcgggacta aagggtcctg gacatgctca
     4681 cttagaaggt ccgggttcta tgtccgttca gcatattctt ggtgatgagc aatcagttgc
     4741 ggatattatt gaaatgctga atgaagctgg gctaaatgtg acctatgaca atcatgttgt
     4801 tagtgctatt tggcagaaag cctgtgtcaa tggtgtgatg aatccaactt gtaccatttt
     4861 agactgtaca attggtgaat tatttggtac ggaggctggg ctgaatctag tacaggggat
     4921 tttcaaagaa tttattgctg ttgctaagtc tgaggcagat ggaattgacg aagaagctat
     4981 ttggaaatat gttattgatg cctcgaagaa ggcttccaat cactatccat ctatgcacca
     5041 ggatttggtc caacatggtc gaaagacaga aattgattat ctgaatggag cggttgtttt
     5101 taagggcaaa cgtgcaggta tccctacacc atactgtcag atgataacag atatggttca
     5161 tgccaaggaa agtatgctgg ggttgagata ggagaaagtc atgctgattg aagtggacac
     5221 gattgaagaa tatatggctg ccttgcctga aaatcggaag gaagtagttg aacggctcca
     5281 tcaagtgatt gtggaacagt taccagctgg ttttgaagta ggaatcttgg gaggtatgat
     5341 taactattat gtgtcgcttg ctgcctaccc tgatggttac cactgtacac cgggagagcc
     5401 cctgcctttc cttgccttgg catcacaaaa ggcacacatc gccctctacc acatgggaat
     5461 ttatatggac caagagttga atgattggtt cgttgctgct tatcaagcac aggtgcctac
     5521 caaactggat atgggcaagt cctgtgttcg tatgaaaaat cccaagaata ttccttatga
     5581 attgataggg gaattggtta gtaagatgtc tatggagcgc tatatagagc tctacgaaaa
     5641 aaatcataga aagtaaatgt agtgagaaga agtttttatt cttggttgat gacccaacgc
     5701 aatccgaaaa gtaatgaacc agtagctatc ttggcagatt atgcttttga ggaagttgat
     5761 tttcctaagc aatcagataa ttttgatgag gtcagtcgtt ttttggagga atcggccagc
     5821 tttgcctttt ccatgtcgga ttttgatgcg atttgggaag attatttggg acattgatga
     5881 caaaagaaga taaagcaaat acatatttgt attttgcttt tttttatttg tatgaatagc
     5941 gccgataaat gatggaagaa ttgttcgttt tttgatataa taacaggaga aggtagcatt
     6001 tgatgcaaga gaaatgaaag gagatcatat gcacaaattt ttttacgaac agaggaaagc
     6061 gttttctttc agaaagctga ccatcggtct tgtttccctg tgtgtgggta ctagcctact
     6121 atttggtatc caatctcaag aagtttcagc ttcgacagta agtcctagcc agattcgttt
     6181 cgaatatgtt ttagaggcgg aattatcggc agaggagcga cagttgattc agtctagcct
     6241 accagctgaa ttgaaggaag aagtgaccta ttttgtggtt tatcgtccct ctaagaaagt
     6301 tcttcctgca acgggtgagc tagctggttc aggtttggct gtcctaggac taggtttctt
     6361 ggttttagct gtttctgcga ccaagtctaa gaaggcgcgt gtcttgacca tgctttacgt
     6421 gacaactagt ggtctggctc tgcctgtttt ggaagtagga gcagttcaaa gttcagcact
     6481 ggctgcttac aatcagaaca tcaccattcg tccaggggat tccttgccgg atgggaaatt
     6541 gcgattggat ggttatgagt ttgtggggta ttatgttcag gagtcatcag tcaagaccag
     6601 tcttccttca tcagaaacgg agaaaaatga tgcagctaag ggtacacaag ctagttcagc
     6661 acaatcagaa ggtaagaaat ctgatttaga agaacttgcg aaaccaagtg ttcttcagga
     6721 aaattctgaa agccaacttt ccaacagaga tgatagtcta caattgcctc ttaaggagtc
     6781 atcggttgaa aaaacggaga atacagtctc ttcagaaaca acaaattcgc aaacaggcga
     6841 tggtttagct tctccatcaa atacatcaac tgttgctgat aagaaagagg actctcctaa
     6901 tacagaagaa agccaaaata gcggacttga ttctactttg cagattccag gcttacttat
     6961 cttgaatcgt aaggatagaa cagatgcagt aacagaagtg gcacctgttg gtcaagcatt
     7021 accttttgtt gcttttcgta aggaaaaaga aacgtttgct ttggagttgg ttaaacaaga
     7081 ggatccgcag cttgaaattg gcaagtctcg ccttgttcct ggtcaagagg gagagaaaga
     7141 gattacttat gctgattttg ttcaaggaga gaagcttctt cggagtgaaa agatttctga
     7201 acagataacg aagaacgcag tagcacctat aatgtatgta ggtactaagc aggtagaagc
     7261 accagttatt ccactgccag aagttccttc ttctccaaaa gtggaatcgg aaatctcaga
     7321 tgcaggttca acggatgcga atagcagtgc aagtcagcat acagagcaac ctaaaccatc
     7381 aaccccagat tcagcagtcg accttccagt tccgcctcaa ccagaagtaa ggcctgaggt
     7441 cgacgttcca gtcccacctc agcctgaaac aactccagaa acagaggagc ccgtagcccc
     7501 gcaaccagaa gtagttccag aaacagaggt acccgtatcc ccacaaccag aattagctcc
     7561 agaaacagag gagcccgtat ccccacaacc agaagtagct ccagaaacag aggtgtccgt
     7621 agctccacaa ccagaagtag ttccagaaac agaggtacct gtatccccac aaccagaagt
     7681 agttccagaa acagaggagc ccgtagctcc acaaccagaa gtggttccag aaacagagga
     7741 gcccgtatcc ccgcaaccag aagtagttcc agaaacagag gagcccgtag ctccacaacc
     7801 agaagtggtt ccagaaacag aggtaccaac aactccaaat acaggttcta cagatgccac
     7861 tagtggtgca agtcagcatg gtgaatcgaa tgagcatcca acttcgcagg agctaaccga
     7921 ggcagaaatc cagtgtattc tggacccttc gtcaacctgc tggccagaaa aagaggagaa
     7981 agtggatcct aaagttcaag ctcaacaaat agaggaagca gcagcaaaac tcagagaaaa
     8041 aatggaagag cttcagactt ataagtcccg ctttaaaggt aaagaatgga cagactatat
     8101 caatactgtc tatgaggctt ccagagccat tttggaagca agagatttag ctgatatgct
     8161 cattcagaca agtttgatag aggatgatct ccgtttcctt cttgttgaaa cagatgccaa
     8221 tagcggagca agccagaaaa cagaagggga attgattttc gaacttccaa catccaccag
     8281 tgagacagta acacctccgc ttactccaac taccccagac tcttctggtt caacaactcc
     8341 gaaaccatcg gattctacaa ccgccccatc aacagaaacc gaagaagggt tctgtccgat
     8401 agattcaaaa ccagaggaaa catgtggtcc agaaacctct ccaacagaag aaactccatc
     8461 aggtgaaggc tcgtcaacta gcggttcttc tggagaaact aattcttcag aaactaatcc
     8521 gtctacatcg actatcccag actcttctgg ttcaacaact ccgaaaccat cggattctac
     8581 aacggctcca tcaacagaaa ccgaagaaga gttctgtccg atagatccaa aaccagagga
     8641 aaactgtgga gtagaatcag agccacagaa agaaatcgtt agtcaagtag aagtagagag
     8701 cacaaaagat gtgagcttta ttagacgata tgaatcgaac gaccaattag agtttgggga
     8761 aacacgaacc aaacaaattg gtcaggtggg gcaggagaag gtgatagaaa cttatcgtct
     8821 tgtcaatggt gagagaagag agcggttatc aattcggact gagaatgttc gacaagctcg
     8881 cgaagaaata atcgaagtag gtaccaaacc aactgttact aagacaccaa ttcgctttac
     8941 cgaaaaagag atagctgatg gaaatcttta tgttggagat cgtgtgattg aagttcatgg
     9001 agtggacgga gaacgaactg taactactag ctatcgacta aatacgcaaa caggagaaac
     9061 gcaaccagaa caaccagttg ttactgaggt ggctgctaaa gaacaaaaag tccgtattgg
     9121 tactaagcca gttgatgaaa cacggcaagt aatccaagat accgttgtga agtttactac
     9181 tgaatttgag agtgatgtaa acctttctta tccagagact caagaaatca cgccaggaaa
     9241 agatggcttg aatcggacga ttattacccg tcgttatatt cgaggacagg aggttggtca
     9301 acctagtcaa gagaaactaa ctatcactcc agtacaaaat agacgggtta aggtcggtat
     9361 taaacctgaa agtcgtattg ttgagacacc gttccaaaca gtgtatgaag cagacagtag
     9421 tcgtcaatta gatactcgtc atacaagaca agaaggagtc aatcagcaaa taacctacac
     9481 taagacctac agtatgaatt ctgaaacagg tcaagtcacg gctcagccag aaactggtcg
     9541 acttacaaga caagggcaaa ataaaattat tcaagtcggt actcgtccga cggaacgaac
     9601 tgaggagatt gtcttagaga ctattagacg agataattcc gaactggaaa aaggcacgga
     9661 acatgtcatt catgtaggta gtccaacgat aagagtctat cggacaaatt attctgtaga
     9721 tcctacaacg ggtcaaatta ctactcatcc agaagttctt gtttctgaaa cagagggacg
     9781 ggcaagagaa gttgaaattg gaaccaagga gccagagcaa ccagttacac caccaacaga
     9841 aaatgaggaa tcttgtccga ttattcctga taattcggat ggtggtacct gtgaagttcc
     9901 aactgagccg actgaaaaac caagttcacc tgaccttgaa tgtattctga atccaactga
     9961 tcaatgctgg ccagaggaag aggaaacagt caatccaaaa acagttgctc aacttcgtgc
    10021 gaagatggac gaacttcgta gctataaagc gcgagttgag gggtatgaat ggcataccta
    10081 cattgataca gtctacaagc attcagagga catgattacc tcaggaaatc cagctaatat
    10141 tcgtactcag cttgaagtga ttcaagatga tattgatttc attgtggatc ttttaacaga
    10201 tttaggaaat ccaaaagtcc ttgttgaaac ggatgccaat agtggaccaa gtcttaaatt
    10261 tgaagtaatg gcaaaacctg tcaatgtccc gactgatgct aacagcagtc caagtcgtaa
    10321 aaatgaggat actaccagcc cagtcacgcc gaaaccagaa gaaacgacag gtacagagaa
    10381 accagaacct gattctccga caaatcctcc ggtgacccca acaccaaatc cagagcaacc
    10441 aactgttcca gacactccag atacaacaga aatggaaaca cctattgatg tagatattga
    10501 tagcttgcca aaaccaacca tgtttatacg aaaagtagat atccaaaagg atgctcgtaa
    10561 agcaatcatt cactacatct tagaggattc agcagagcgg tttgaagggg gacaagccca
    10621 cttatttgta aatgataaaa tagtatcaac agttcctatt cgtcgtcaaa atggaaaagt
    10681 tcaggctgaa tttacagatt taaaacctaa tgtcgattat cttgttcgga cagatttgac
    10741 ctatagtggt acttcagaaa gtttggtaga tagtttagct gacgaagcct ctatcgaaat
    10801 tgaagagcgt caattacaga ttaagcatat tgatcgaatc gaactctgga agtttgaaaa
    10861 tgggaaggca agcattcaaa gggagttggc aactaggcct gttaatttaa ccaattattt
    10921 tgccaaggtg atttcgagcc agcaaaaaga gattttactc ccaatcagtc aagttgattt
    10981 acagtcagag aacggagaat ccttctacct catcaaagca agtttggaca atttagttga
    11041 agaacaatca acttctaatt cctatagtcc aggcttaact ttccgtgttg ccaaacaaaa
    11101 aacttctaca agcacaggaa cctatacaga ctttgcaagc ttagttcgag cgatgcaaga
    11161 aagaccatgg gatacattta ctcttggtgc agatttgacc gcatcgacga tggatgtaac
    11221 tggaaaagat agttatatta ctggggaatt cacggggaca ttaaacggcg caggctatac
    11281 cgtctatgac ttgcaagctc ctctcttcca caagacatct ggtcggattg aaaatctaaa
    11341 tctaaaagat gtgacgatcc atcagaagga taagaaagaa gtcggtgctt tggctaagga
    11401 agctaaagga ggacgcatag aaaatgtcag agtagaagga agtgttactg gaggcaatca
    11461 tgtaggtgct ttggtaggga ttgctacaaa cactcaaatg actaatgttg gcatcaaggc
    11521 tagagtgtct agtcaatcaa cagaaactac agataattac gttggtggtc tggctggctg
    11581 gattggtcaa ggtggacaag cgcaacgtat acataccgat gtgctattga cgagcaattc
    11641 tgaacgagca agaattggtg gtatcgttgg tcaaatggaa ggggcaaatg cttctgttcg
    11701 caaggcttat gcgaaaggaa tgatttcagc tccgaagaca atcaatagtg aaatcggtgg
    11761 tattgttggt acaattgttg gttcaagtaa ttctataatt gaggatgtta tttcagctgt
    11821 caatgtgcca aacggtcgca aggtgtatca ttctgtcaca gatgaaaaac tccaagttgg
    11881 taaaaactat gctgttactg gagaagcatc tggtcagaat aatagtaaac aggagcattt
    11941 agaagcaagc caagtggatg ggaagttaac agaatatggc atccagtcac gagataccga
    12001 tgctagaaac cactcatttg tttcagctaa agtggatata aattatcgca ctcatcctca
    12061 ttaccaagaa aataggcagt tggcttatga aaacatggaa aaactgttgc cattctttac
    12121 taaagatgtt atcatccaac aggccaatcg tctaagttta aaagataagc ttgtcaccaa
    12181 gaaattattg gatgttgtgg cgattgatgg tcataacaag aataggccag tatttgatac
    12241 ccaaggtcaa aaacagtata taaacaaagt gatgttccat tttgaagatg gttctattga
    12301 ctatgactgg ctagttaaga aacaggattt aaacagcgga gctattacag agtactatgt
    12361 cgttgatagg gaagttacct atacaccgga aaatatggtt tcggctaccc atcttgatca
    12421 gttacttact cgcctattgc cagaatttga ctcgctaacc tattcttcaa aagaagtctt
    12481 ggatgtctta ggattgacag attcaccgaa tgactatgct ataaaagaat tgttgttcct
    12541 gaaagaatcc tttggtaagg tcaaagccaa tattcgtcaa catatgcgag acttgttggt
    12601 atcaaatcat gctatcaatt tgactagtca agtaacagaa gactatacat tcaactatat
    12661 caagaacaat aaagtacagt tgttgcttgg tttagcctat atggatcgtt ggtacaatat
    12721 ccagtttgga gcaacaaatg ctaaggattg gatgactaag aaggcggact tctttggtaa
    12781 ttctgctagt tccttgaatc aattgattac actcggtgat ttaggagcag gggccttgaa
    12841 gcccaataat aacttcgctc ttggtagtca attgattgct aaaccagctg taaatggaga
    12901 tttatttgct tatttagaag cttaccgcaa acggtttgct ccagagatgt cagatagtga
    12961 ctggttcaag tctgctacta aggcaaatat tattgaaacc aattctacag ttgaagaggt
    13021 gcgggctaaa caagaagatg caaacaacaa gaagtattct aatcgcttct atgataagtt
    13081 gaagagcgat acatggtcct ttaaagagat ggctcttatt cttcttacta tgccagagcg
    13141 gaatatcttt atcctgacgg atatggccaa tactctgatt ggttcttatg ataatcaatc
    13201 aggaaccagt gaggagattg agaaagccat tgcaaaaact gccaagacat gggctggaca
    13261 cgcagattat ctctacagga ttttgccatc tggacataag gaaaaggtgt ttaggcagat
    13321 catcacttgg gataatagaa gattgaaagg ctcttggcgt ccgatagatt ctctaagtag
    13381 tagggatgta ccttctatga aggatttcta catgccgtta ggctatagtt ttccgtacgg
    13441 aacaggtgct acagctcagt cagacttgaa agatattttc tattcaaatg cggatgcgat
    13501 tggtaatgaa ggcgctagga tttataccca tgaattgacc cacgttgctg atgatgacac
    13561 tttcttactc ggacatggtc gtcgtagcag tatggaattt gaggtgtatg cgcgtggttt
    13621 gtttgaaacc atcaattggt ttgatcaaga catacttggt tttaatacca tctatgattt
    13681 ctctgaatat gagaagaatt cctatggtcg tcgtttgact aacctcaatc cggaacgttt
    13741 ccaatctaca caagaccttg aacaatatat gaaaggctat ttggacctta tttatacact
    13801 tgattattta gagggggaag cagttctgag tttagcagga gataatacct taaatactgc
    13861 tcgcagaaat tggttcaata aattggatac caaagaaggt aatgcagctt ggatagaaaa
    13921 attccgccgt gcagcacaat ttaagactat tgatgaactc attgacaacg gtatggtttc
    13981 tcgtcgctct tatgatccag atggtcatag tgacaatgag ctcttcccag gtaattctta
    14041 tctgactgtc aatgctctca acccaatcta tggagctatg aataacgatg gaccaagtcg
    14101 aaatgagttt gagttccgta agattgcttt tgagttattg gcagaaaaag gttatgagaa
    14161 tggttttgtt ccttatctat ctaaccaata caaggctgaa cttggtcagg cagatcctgc
    14221 ggaccgtatc tcagataatc agttgatttc taagattacg gacggagtct atgcagattc
    14281 gaaagccttc cgcaaggata tgtttaaacg tcgcaaggag aaattagatc agttgaagcc
    14341 tgtgacaatc tatggaaaat ctgacggtga aggctactat tacagcgcaa gtaggcaagt
    14401 agaatcagtt caagacttac gtcagttgat gaaggaagca gtggaatacg atgcacatcg
    14461 ttccttatac gcttcacaaa aactatatgc ttctcaagca aatggttaca acaaaacgga
    14521 ttcccgcgtt tacagcctaa aagcagctat tttgaatggc tacctccgtg caacagatga
    14581 cttcagggag tctatttaca aagaaaaacc ctaaagagtg aggtacatac aatagatgag
    14641 cagtgaacag tttcgttcgc tgcttttctt acctcgaaaa ttcagttggt ggaaaatttt
    14701 ggtataataa tagaaaagct accaaaggag aagtttcttg ctagaacatt cgattgatat
    14761 tcatttaaaa catccagatg atttgtttag tctttttggg tccaatgagc gtcatctgcg
    14821 gctgatggag caggaattgg gcgtggtgat ccatgcacgt acagaagttg tgcaagttat
    14881 cggtcaggaa actcaggtgg agcaggctcg cctggttatt cagtccctct tagtcttggt
    14941 taatcgaggc ctggtcatca atacgccaga tgtggtcacg gctatttcca tggtcaagaa
    15001 tgatgagatt gaaaaattcg ttgccctcta cgaagaagaa attatcaagg ataactacgg
    15061 caaacctatt cgcgtaaaga ctcttggtca aaaactctat gtggacagcg taaagcgtca
    15121 tgacatcgtg tttggaattg gtcctgctgg tacagggaag accttcttag cggttacact
    15181 agcggtcaca gccctcaagc ggggtcaggt caagcggatt gtcctaaccc gtcctgcggt
    15241 agaagcaggc gaaagcttgg gctttttgcc aggagactta aaagaaaaag tagaccccta
    15301 tttgcgtcct gtctatgatg ccctctacca gattttgggc aaggagcaga ccacgcgcct
    15361 aatggagcgc gagattatcg agattgcacc gctggcctat atgcggggtc ggacgctgga
    15421 agatgccttt gttatcttgg atgaggcaca aaacaccacc attatgcaga tgaagatgtt
    15481 cctgacccgt ctgggcttta actccaagat gattgtcaat ggagacatta gccagattga
    15541 cctgccgcgc aaggttaagt caggtttgat tgatgcgaca gagaaactaa gcaaaattcc
    15601 acagattgat ttcgtacatt tttcagccaa ggatgtggtt cgccatccag tcgtggccca
    15661 gattattaat gcctatgaag aggaggctcg ggcagctgat agtcgagcaa gttttgagac
    15721 gattggggag ctgaagaaag agcaagatgc ggaggagtaa ttattttctg catctttgtc
    15781 tgtcgaaata gtttgtggaa aacaaatgag ggagtgacgc gtgataaaac aaggtctact
    15841 gagattggtt ttgcttggtt ttagctgtct cttagctgcc tgtggtggtc agaaaataag
    15901 agatgaccaa acacaagttg aaaaagcaga accgactatc caaactaatt tttatcaagc
    15961 cataaacaag gactggttaa atggtggctg gttatcaagt ggtacaccat tctacaatga
    16021 gtttacaaga ttgcaaatgg aagtagatga gcaattaaaa tcggattttg acaaaatggt
    16081 agctggtcag ctagagcctc agtctgagga tttagtagaa tttatcaagt tgtatcagca
    16141 aggtcttgat tttaccaaaa gggaagaaga tggtgtcaga gtagctagaa tgatactgga
    16201 tgaaatgatg ggaattactt cgttttccga gctgaaatcg cttagtcaag attggattcg
    16261 taaggactat ccattgccct atggtcttga tgtgattgcc aatccacgaa acacatctga
    16321 aagaatgcta attttgctac cacctcagac gattctacct gataagtctt actatgaaga
    16381 caggactgtt cgtgagaaac tcatggattc ttaccgtata tctgcgagac atattttgga
    16441 aaaatgtggc tactcagacg aggaggccac tgctttggtt gaaggtgcca ttgcttttga
    16501 caatcgactc gttgacactc taccagctag cgagaatgtg catagtgatt ggggacctgt
    16561 gaacgcagaa gaacttagaa cattttcaga ggttaaaaac tactctccag ctttatcgat
    16621 tggagaacaa ttagtaggac tggtgggctt ggaaccgggg gaagtttatg tttctaatcc
    16681 aagctatttt gaacaattat cccaatttat caaggaagaa aatttctcag aatatcgatc
    16741 atgggctttg gttagccaag caatgaagtt ggctccctat ttgactgggg aaatcatgca
    16801 gacagcaggg agatttcatg cagaagtcca aggagtttca gcctcctatc caaatgatta
    16861 catgacttat ctggatgtga ctggaatgtt caaggaaagc ttgggtgttt attatggtca
    16921 taactatgcc gatgaaacgg acttacttgc cattcaggaa atggctgagg caatctctag
    16981 gacttatcaa gaaaggattc tagccaataa atggctcagt caagccacca agcaagccgc
    17041 aattaaaaaa ttagaaaata tcacttatca tatcggctat ccaagggagt tgagcgactg
    17101 gaccaagtca ttaaaggttc gtgaagactt gtcttatatt gaaaatgttt tggctattac
    17161 gattcaagct agaacaggtg ttttcgagcg ttatagtcag ccaatagata gacaaacttg
    17221 ggctagcaat gtatcggcaa gtgaagtaac agccgcctac gctcctagtc agaatgctat
    17281 ttatattccg gcggctattt tacaagctcc ctattatgac aaaaatcaat ctgtagccga
    17341 gaattatggc gggattggca aaattatcgc tcatgagttt gttcatgcct ttgatgccac
    17401 aggagcaaat tttgatgaga ctggtagtct aaaagactgg tggacagagc gagatggact
    17461 agcgtttgaa gaaaaaaatc aagccctagt agacttgttt gatggtctgg aagtttatgg
    17521 tggtagaata aatgggcaac agactctatc tgaaaatctt gcggatttgg gaggaataca
    17581 gattgccttg gctacgctca aaaaagaaga accgtcagct aatctaaaag aattttttga
    17641 gcactatgcc cgtagccgtc gagaaatggt tgcggttgat tatggccgtt atcaacttct
    17701 ggtagacaca cattctcctg aggaatttcg ggtcaatatc caattacagc aaatggatga
    17761 tttttataaa gtctaccata ttcaagaagg tgacccaatg tatagggcac ccgaagagag
    17821 actggttatg tggtaaatta aaaactgcct ggttcaatca gaactgggca gtacttattt
    17881 ttacagtcta aaaaatggat taaaattttt ctcatgtcca acgctggtat tttgaccatg
    17941 acctggatgg acggtgtagt ggtttggcag ggtgaagata tgctctctga tgccagtaat
    18001 caggtcatca aagttgctgg ttggcaggtc tgtacgtccc acagtttcac ggaaaagtgc
    18061 gtctccagtg atgatacatt catcctctgg gaagataaag gaaacaccac caatagagtg
    18121 cccaggtgtt ggaactacct tgaaatgaaa accgtcaaac tggtagtctt cttggtattg
    18181 gaagattttt tcagcaggtc ggcagactac attttccata tcatcatgac gaggtagacc
    18241 tgatagattc atctctggtg taaatagcca gtcggcctcg ctttcagcca catagacagg
    18301 tgggaaatcg tagctttcac gtaggatgtc caagctcata atatggtcgt agtgggtatg
    18361 ggtcaagaga atagctgaaa tgggtttgcc aattttttca atcgtagctt ggattttgcc
    18421 ccagtcactc ccagggtcaa tgataatcag atgggtatca ttttcaaggt agtaggtatt
    18481 ttgaaaagcg acaggattga cagatttgtg aataatcatt ctttttcctt cttctaacag
    18541 ttactgatgt tactagtcta acaaaaaaac acgccttctt catggaattt gtttggagct
    18601 ttttccatga gagggaatat gctataatga acagtatgac agacacaaga acaagcaatc
    18661 ggtatgccgt tgtagatttg gaagcaactg gtacaggtac cgatgcaaaa atcattcaaa
    18721 tcgggattgt tctcgttgaa aatggagaaa tcattgacag ttatgcaacg gacatcaatc
    18781 cctatgagct actggatgac catatcaaga atctgacagg tatcacagac caacagctaa
    18841 gtcaggctcc agattttggt caggtagcaa gtaccattta tgacatgatt ggagatgcta
    18901 tttttgtagc gcataatgtc aagtttgatg ccaatctctt ggcggaatcc ctcttttttg
    18961 aaggttatga attgttaacg cctcgtgtgg atacagtgga gttatctcaa ttattttttc
    19021 caacttttga aaaatacagt ctgggcaatc tagcagagca tttggacttg ggcttggacc
    19081 aggctcacac agctatttca gatgcaatgg caacggctcg tctcctcatc aaaattcaag
    19141 agaaaatcaa gagtttgcct cgaactgttg ttgataaaat tcttgatttg gcagataatc
    19201 tgctctttga atcccgtctg gtcattgatg aaatggtgcc ttatctagca gaaacgatgt
    19261 cgaccagtct agaaagtatt cacggcttgg ttttgaaaaa gccagtaaaa gaccagccag
    19321 cctaccactt atcggaagat tttgcgacaa atattgccct tcttggctta catgaacgca
    19381 aaaaacaaac ggcctttgct caagtggttg aaaaacgact ggctgatgta gaacaagtgc
    19441 attttataca ggctcaggca ggcttaggca agacctacgg ttacctgctg cccttgcttg
    19501 ccaagtcgga ccagcctctc ttggtgaccg tgccaaccaa gctccttcaa gagcagatta
    19561 tggaaaaaga ggggagcaaa ctgcgagaga tttttcatat ttccatggtt tcgctcaagt
    19621 cgcccaagca ttttattaaa ttggatagct attggaaaac attgcaaaga caggatgata
    19681 atcgcctggt caatcaattc aaaatgcagg tgcttgtctg gttatgcgaa accacgacag
    19741 gtgatttgga tgagcttaag caaaaacaac gctatcaagc ctactttgat gagattgccc
    19801 acgatgggaa attggagcct gaaagtcttt tctggggctg ggatttttgg caacgattga
    19861 accaacaagc tctctctagt agactgctca ttaccaacca cgcttatttt ctcaaccatc
    19921 ttaaggatca agatcctctc atggataagc gtctggtggt gattgatgaa gcacaaaagt
    19981 ttctcttggc tgctgaaaat ctagcgacgg attctcagga tataacagct cttttgcaag
    20041 tattgcagag caaaaaagat aagtcagata gtctattaga ccaacggctc tacgaatcct
    20101 gccagtttga actcaaccac ctcttgaccc gttttcgcca gcatgggcag cgagaagttt
    20161 caaaagacga actgggtcaa gtcaagcaga atctggctga gttacaagat gttgacctac
    20221 aagacctgga ccaactcctt gatgtctacg accatttttg gctggaggaa aagtatcttg
    20281 aggacaagcg gcttgcctat ttgcggggct ccaaggacag cctcttaaat gcgaccaact
    20341 acctgccaga tactaagatt ttctgcatca gcgccacctt gaccatcagc aaaaaggtca
    20401 gtctggcgga tttgctgggc tttgagcagg tcaccatgga cttgcttccg acccaggcag
    20461 tgaccaatca gcagctgctt tttccgaccc atctccccga catcctcgct tggaccaagg
    20521 aggagcatgc agcttatttg gctactactt taggagaaat agcagagctg ggacgaccga
    20581 ttttggtctt gttcacatcg atttctctgc tcttgcaggt gtcggatttg ttagaaggca
    20641 gtaatattcc ccacctagcc caacacaagc atggacagga aatgactctc aaacgcaaat
    20701 ttgaacgagg tgaatgtcag atcttactgg gtacaggtgt cttctgggag ggagttgact
    20761 ttgccagtca ggaccaattg gttcaggtca ttacaaggct cccatttgac aatccaaagg
    20821 accggtttgt acaaaaaatt aatcaccatc tgcgtgaaga agggaaaaat ccattttacg
    20881 attatagcct gcctatgatg atgattaagc tcaaacaagc catcggtcgt accaatcgcc
    20941 atgacaaaca agattcacta gtcttggttt tggacccgcg tgttcacacc aaacgctatg
    21001 gacagcaaat tctgtccttc tttgagaaag attattcaat gttaagtgtg gatgcgaaag
    21061 aaatagaagg agctattcaa gatttttttg aataagttga aagggagtga gaaagaactc
    21121 gactggtcta aaaagagttc gtcaacaagt ctttatttct agttgttgag ctgaaacagt
    21181 ctatccccag actgtttcac tcccaccccc gcatagttcc aactgtctgg gggacagttg
    21241 gaagttggaa atagagcgaa caaagtttgc tacaaaactg tctgggagac agtttgaggt
    21301 tggagatgaa gcgaactctg ttcgcatcag tcgtataggt cagatttgga gtgtaataca
    21361 cgaattgctg agatttgctt cgcaaatctt atctccaacc tttaacagtc cactggactg
    21421 ttaaacccaa tcaaccactg cgctgagatg ttgacacgaa
//
LOCUS       DASGAC010000017        21412 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.017, whole genome shotgun sequence.
ACCESSION   DASGAC010000017 DASGAC010000000
VERSION     DASGAC010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 21412)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21412)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21412
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.017"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..692
                     /gene="dapD"
                     /locus_tag="U1335_000496"
     CDS             <1..692
                     /gene="dapD"
                     /locus_tag="U1335_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017768831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-acetyltransferase"
                     /protein_id="HEM5231004.1"
                     /translation="QKMTAQEIIAFIGNAVKKTTVKVTFERELAGPVPAEVTKLSNVL
                     FGDWKDVEPLLANLTENVDYVVEQDGRNSAVPLLDKRNINARIEPGAIIRDQVTIGDN
                     AVIMMGAVINIGAEIGPGTMIDMGAILGGRATVGKNSHIGAGAVLAGVIEPASAEPVR
                     VGDNVLVGANAVVIEGVQIGSGSVVAAGAIVTQDVPENVVVAGVPARIIKEIDAQTQQ
                     KTALEEALRTL"
     gene            702..1829
                     /locus_tag="U1335_000497"
     CDS             702..1829
                     /locus_tag="U1335_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyldiaminopimelate deacetylase"
                     /protein_id="HEM5231005.1"
                     /translation="MLDLIATRRALHQIPELGMEEFKTHAFLMETIEGLLQDCSFAQV
                     RTWKTGILVYLTGSAPEKTIGWRADIDGLPIVEETGLDFKSLHPDRMHACGHDFHMTI
                     ALGLLEKMAEQQPRNNLLFLFQPAEENLAGGMLMYEAGAFGDWLPDEFYGLHVRPDLK
                     VGQMATNRATLFAGTCEVKIRFTGKGGHAAFPHTANDALVAASYFVTQVQSVVSRNVD
                     PIEGAVVTFGSMHAGTTNNVIAETAFLHGTIRALTQSMSLLVQKRVREVAEGIALSFG
                     VDLDIELNPSGYLPVENNPQLADELMTYFDGVDGVEMIDCPPAMTGEDFGYLLNKVPG
                     VMFWLGVDTPYPLHNPRLSPKEEVLPFAVDKLSGFLKIKAN"
     gene            1871..2413
                     /locus_tag="U1335_000498"
     CDS             1871..2413
                     /locus_tag="U1335_000498"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEM5231006.1"
                     /translation="MDKKSIRQEVLQSLKDLTSSQRTRWSQQLTERLLASEAYQGTKS
                     LGTYLSMPHEFDTSYLIEQAQKDGKQIFIPKTYSQGRMDFVEYNPDDLVKSRIGVWEP
                     GTYSQPVDKSVVKLIHVPGLAWNQAGFRVGYGGGFYDRYLADYQGKTVSTLADFQVYD
                     FEPDVFDIPVKELLIFEELF"
     gene            2397..3074
                     /locus_tag="U1335_000499"
     CDS             2397..3074
                     /locus_tag="U1335_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEM5231007.1"
                     /translation="MKNFFDKRYPVTNGLLAVTALVFLLIQVFRFGQTTAAYTIFEFG
                     GMYGQVVRYDPTQLWRLVSPIFVHIGWQHFLFNSFTLYALGYQLEGLFGSRRFFLLYL
                     LSGIVGNLFVLFFTPDVVGAGASTSLFGLFAAMALLRKFSRSPYLQVLGQRYMVLLGL
                     NLVLGLFNPTISMAGHIGGAIGGCLVVMFLPPLVEKDLFTGKQIFFSFIGYLGLIALL
                     LGIFYLM"
     gene            complement(3093..3995)
                     /gene="galU"
                     /locus_tag="U1335_000500"
     CDS             complement(3093..3995)
                     /gene="galU"
                     /locus_tag="U1335_000500"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEM5231008.1"
                     /translation="MTKKVRKAVIPAAGLGTRFLPATKALAKEMLPIVDKPTLQFIFE
                     EALKSGIEDILVVTNKSKRSIEDHFDSNFELEYNLKEKGKNDLLKLVDEATAIRLHFI
                     RQSYPKGLGDAVLQAKAFVGNEPFVVMLGDDLMDITDTKAVPLTKQLMNDYEKTHAST
                     IAVMPVPHEEVSAYGVIAPQGEGINGLYSVETFVEKPKPEDAPSDLAIIGRYLLTPEI
                     FEILENQKPGAGNEIQLTDAIDTLNKTQRVFAREFKGSRYDVGDKFGFMKTSIDYALQ
                     HPQVKDDLKQYLIDLGKKLDTKKN"
     gene            complement(4014..5030)
                     /locus_tag="U1335_000501"
     CDS             complement(4014..5030)
                     /locus_tag="U1335_000501"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000415108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEM5231009.1"
                     /translation="MTKQTIAVLGPGSWGTALAQVLNDNGHTVRIWGNIPEQIDEINE
                     HHTNTRYFKDIVLDDKITGYKDLAETLNGVDAVLFVVPTKVTRLVAKQVAQALKHKVI
                     VMHASKGLEPDSHKRLSEVLEEEIPADLRSEIVVVSGPSHAEETIVRDLTLISAASKD
                     LETASYVQNLFSNNYFRLYTNNDVIGVETAGALKNIIAVGAGALHGLGYGDNAKAAII
                     ARGLTEITRLGVAMGANPLTYSGLSGVGDLIVTGTSVHSRNWRAGDLLGKGEKLEDIE
                     ANMGMVIEGISTTKAAYELAQELDVYMPITQAIYSVIYQGASIQDAIKEIMSGEFRHE
                     NEWS"
     gene            5257..5706
                     /locus_tag="U1335_000502"
     CDS             5257..5706
                     /locus_tag="U1335_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM5231010.1"
                     /translation="MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAE
                     RSDLETFVKDIEAELKISKSVASNLVKRMEKNGFIQVLPSQVDKRYKRLVLTEKGQGK
                     ICHLKAFHEEMHHSLFWGIQKEDFDLVKQVANQLKENIQHYKEKNHV"
     gene            5699..7405
                     /locus_tag="U1335_000503"
     CDS             5699..7405
                     /locus_tag="U1335_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231011.1"
                     /translation="MFKEAILRYKWYALASVLLTSIVVATTLMQPSYLQDVLTAVLAN
                     DKDEIVRVGKLLLIIAGIGLLAGLVNTIAAAKISQGVSADIREKTFRKIQSFSYANIE
                     EFNAGNLVVRMTNDVNQIQNLVMMLFTVLMRVPLLFVGAFIMAVRTMPELWWMIILMV
                     VLIMAIMAVVMGQMGPRFGKFQSLMDKMNSIAKENLRGIRVVKSFVQEKNQYKKFKDV
                     SNELLDLNLFIGYGFAILQPLMMFISYMAIFASLYLVSGMLKNNMEAVGGFTSFMSYL
                     MQIMFAIIMTSFMGMQASRAAISIKRISEVLDTEPAMTFKDVADEELAGKIVFDNVSF
                     TYPHDTEPTLKHISFEIEPGQMVGVVGATGAGKSTLAQLIPRLFDPQEGTVSIGGRDL
                     KEVSQNTLRDTVSIVLQKAILFSGTIADNLRQGAPGADRARLERAAGIAQAKEFIDRL
                     DDTYESQVEERGNNFSGGQKQRMSIARGVIGEPKVLVLDDSTSALDAKSEKLVQEALN
                     HDLKGTTTVIVAQKISSVVKADKILVLDEGRLIGQGTHAELVATNDVYREIYETQKGR
                     EE"
     gene            7406..9190
                     /locus_tag="U1335_000504"
     CDS             7406..9190
                     /locus_tag="U1335_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000859866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231012.1"
                     /translation="MKTLRFFWFYFKRYKLSFAVIFLAIVTATYLQVKTPVFLGNAIT
                     EMGKIGQAYFASVQMGQSDFKPDLSDFNGVMLNLFFAYAATVVASLIYTLLFTRIVAH
                     STNRMRKGLFGKLERLTVAFFDSHKDGDILSRFTSDLDNIQNAFNQSLTQVVTNIALY
                     VGMVIMMFRQDTRLALVTIASTPVALIALVVIIRLSRKYTDKQQAAVSKLNAYMDEKI
                     SGQKAIIVQGVQEETIDGFLELNEEVRRTTFKGRLFGGILFPFMNGMSLVNTAIVIFA
                     GSSIVLNDSSLETAAALGLVVTFVQYSQQYYQPIMQVAASWAELQLAFTGAHRIQEMF
                     DEPEEVRPQNAPLFTELKEGVEIKDIDFGYLPGQKVLDKVSISAPKGKMVAVVGPTGS
                     GKTTIMNLINRFYDVNSGSVAFDGRDIREYDLDSLRDKVGIVLQESVLFSGTIADNIR
                     FGDESISQEMVETAARATHIHDFIMSLPEGYETFVTDDENVFSTGQKQLISIARTLLT
                     DPQVLILDEATSNVDTVTEAKIQKAMEAIIAGRTSFVIAHRLKTILNADEIIVLKDGK
                     VIEQGNHSQLLKLNGFYAELYHNQFVFE"
     gene            complement(9279..10073)
                     /locus_tag="U1335_000505"
     CDS             complement(9279..10073)
                     /locus_tag="U1335_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HEM5231013.1"
                     /translation="MSPFQEKISAAVSKKEALFDESLGRYALRSMYAGAYLTMSTAVG
                     IIGADVIASQFPSLSRFVFTFIFAIGLVFVLIFGGELATSNMMYLTTGAYYKQISWKK
                     VTQMLLYCTFFNFVGATILAWLFNQSFSYLNLSDKSFVVNAVTIKLGKSDWSNFIEGI
                     TANMFVNMAILGFMLIKEQSAKFFVIISSIFMFVFLINEHLVANFASFMLLAFNATRS
                     NVEAFNMINILRQWIVVFFGNWLGAGLFIGIAYAWLNQTKTNHIEQ"
     gene            complement(10154..11389)
                     /locus_tag="U1335_000506"
     CDS             complement(10154..11389)
                     /locus_tag="U1335_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003107773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM5231014.1"
                     /translation="MKFVGIVGSNADQSYNRMLLQFIQRHFKVKFELELLEIKDVPMF
                     NQDEDQSDCFAIQYLYNKITRADGVIIATPEHNHTITPALKSTLEWLSFNLHPFENKP
                     VMIIGASYYDQGTSRAQVHLRKILDAPGVNAYTLPGNEFLLGKAKEAFDDKGNIINEG
                     TVKFLESCLDNFIKYVGVVSKLKKPKPIAPEDLDCGKPIATTITGVDPDDPDWLEKAS
                     KLVNAVEGDTYVKLDNGLLTVNQLNMFLNAMPFELTYADDNNQFLYYNNSHQEPETML
                     GKRVLAQVGNRLSTVHGTLPPARMKNVEWVVGTLRNGNQEYVRTIVPGTPAEIINTHN
                     YQAMYYPDGSYAGINEIIFNFKPWLDWYLEATGQCLVGGSGTAAAPAHVDATSGASDA
                     GSAPATSTPTDADSGASAH"
     gene            complement(11404..12006)
                     /locus_tag="U1335_000507"
     CDS             complement(11404..12006)
                     /locus_tag="U1335_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007892530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM5231015.1"
                     /translation="MKLLGLIGTNSARSTNRKLLQYIEQHFADKADIELVEIKELPIF
                     NKPANRELPEIVKELVAKIEAADGVIIGTPEYDHSIPAVLMNALAWVSYGVYPLLNKP
                     VMITGASYGTLGSSRAQLQLRQILNAPELKATVLPDEFLLSHSLQAFDANGELIDLET
                     SQKLDAIFDDFRLFVTMTGKLSNAKKLLQKEAENFDWENL"
     gene            12133..12492
                     /locus_tag="U1335_000508"
     CDS             12133..12492
                     /locus_tag="U1335_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HEM5231016.1"
                     /translation="MQRIFYLVFGFVSLVVGVIGIVLPIVPTTPLLLLAGFCFARSSK
                     RFEKWLRNTKIYQFYVADYVETKSISRKRKKQIIWQIYLLMAISIWLAPILLVKMGLG
                     LLTIFITYYLFWVIPEK"
     gene            complement(12670..13821)
                     /locus_tag="U1335_000509"
     CDS             complement(12670..13821)
                     /locus_tag="U1335_000509"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231017.1"
                     /translation="MAMKKILLSILSLFLLSACSTIATNDAKDYDFVIFDDQRAITFN
                     DEQGKLTKIEDRKLFSDGEQLQNVDFFESQGMIYGTILHTYPVEFKHYRLDKEKLKME
                     KIVKPKGKDAYPATFNGKFFYSAAIFSDRVEIYKYDTDFELILQKDFGIEEWGQLMVY
                     DIIIKEGKLYLSISGEKFEDLNKLMNDPVNYHGTVFHEIWELSEDLEVLQRFDLQGVG
                     APDLYHNYHNLIPIGDDTFYLSETYTWTRKEDIVDMVGKNILRYNYKTGEKEFIPLKT
                     LAPTELHYDKERNVLQVLHDQLQVDPYTWTLINLTTGDQRILEFDRNDYHAAWNPFST
                     FYDGHYYYLFDTKLVKYNYDTQEKTVYDLSEYGIDSAEVIMFKDAISNG"
     gene            complement(13837..14499)
                     /locus_tag="U1335_000510"
     CDS             complement(13837..14499)
                     /locus_tag="U1335_000510"
                     /inference="COORDINATES: protein motif:HMM:NF017519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231018.1"
                     /translation="MKKKLLLATAFLAALCLASTQIAHAEDLSAFSSSQEIVHDYDLF
                     TEEQMAEWNVEVPKPIEADSKDYTRAPVGSWSTRAGVIVVSDATSSGVITHGHAGIMG
                     TGNRHSYIIESNPADGVQAKHKTWPKANQVWQLEVRNTTLAQDRAAAQWAANQIGKPY
                     NFNFYDVWRRDRFYCSQLVWAAYRDTVGSKADISLNDYGAAIHPFELRDHSNTAVIYR
                     KK"
     gene            14822..15688
                     /locus_tag="U1335_000511"
     CDS             14822..15688
                     /locus_tag="U1335_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5231019.1"
                     /translation="MKWDFGTVLKEIRKSKGLSQQDVCGDALSRTTLSKIENNKEYPT
                     IAHFSHILRQLDMTFAEFDYICHAYQPSERSSIIHCFENLRGQFFSESNCQDFLYQVE
                     QYLKKQEDIRVQRIEQQLRLILSIYQTGDGERTRQLGQALWKELEKSDTWYLADFRKL
                     GLVLPIIPVFHLKGFVDKILLSLDKYKDFRDVQVSQFAFLYNLSTVLLKNEEYQLCIS
                     VMERVYAMAQESMRIDYVGMANVRMGIFQQDRGMVDKGLAILRAADLLELVEQLEKEV
                     EECWEIFGSEAV"
     gene            16113..17099
                     /locus_tag="U1335_000512"
     CDS             16113..17099
                     /locus_tag="U1335_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HEM5231020.1"
                     /translation="MKELQFLIYRAENDQEKASVIVSDETIWASQKEMARLFDVGVPA
                     ISKHLKNIFEEGELDEHSVISKMETTASDGKNYLTSYYNLDAIISVGYRVNSQKATKF
                     RQWATTVLREYMIKGFAMDDERLKQGENLLEKDYFRELLERVRSIRASERRIWLQITD
                     IFAEIAIDYDANSLVTKQFYAHVQNKFHYAITGKTAAEIIYEKADHTKVNMGLVTWKH
                     SPDGRILQSDALVAKNYLNEKEIRSLERSISGYFDYLERQIEQGKTQTMQDLADSIDR
                     FLAFQDYELLEGHGQITRQVAKEKARSEYAIFNKTQKINSDFEKLLEDLSSK"
     gene            17118..17561
                     /locus_tag="U1335_000513"
     CDS             17118..17561
                     /locus_tag="U1335_000513"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000701975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HEM5231021.1"
                     /translation="MKIRGFELVSQFTDENLLPKRETAHAAGYDLKAAERVSLEPGEI
                     KLVPTGVKAYMQANEVLYLYDRSSNPRKKGLVLINSVGVIDGDYYGNPANEGHIFAQM
                     RNITEETVVVEAGERIVQAVFAPFLLADGDQADGVRTGGFGSTGK"
     gene            17568..18101
                     /locus_tag="U1335_000514"
     CDS             17568..18101
                     /locus_tag="U1335_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM5231022.1"
                     /translation="MQILFVRHSEPDYSMFDQHDNPRLYAGFGRDLAPLTEKGRTLAQ
                     EIASNPIFSQAQVVIASSVTRALGTATYIAHAQQLPLLVEPFFHEWRPDLTGQNASQD
                     EAVLAHRLFLENGGAVPESSPVRYETAAEMRERFLQALEKYKAYDRIVIVCHGMLIRQ
                     FVPKETIAYCEILEYTL"
     gene            18108..19475
                     /gene="radA"
                     /locus_tag="U1335_000515"
     CDS             18108..19475
                     /gene="radA"
                     /locus_tag="U1335_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEM5231023.1"
                     /translation="MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEV
                     KNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFNRVLGGGVVPGSLVLIGGDPGIG
                     KSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
                     IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTK
                     EGTLAGPRTLEHMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVL
                     NPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRAS
                     LIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTHPQECFI
                     GEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVVGVTTIGEVL
                     QKVFK"
     gene            19862..20356
                     /locus_tag="U1335_000516"
     CDS             19862..20356
                     /locus_tag="U1335_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEM5231024.1"
                     /translation="MSYFQNFMKANKAYVDLHGTHHLPLKPKTKVAIVTCMDSRLHVA
                     QALGLALGDAHILRNAGGRVTEDMIRSLVISQQQLGTREIVVLHHTDCGAQTFTNEDF
                     ATQLKRDLGVDVAGQDFLPFTDIEESVRADIALLKQSPLIPDDVEIFGAVYDVDTGRM
                     TEVI"
     gene            20627..21385
                     /locus_tag="U1335_000517"
     CDS             20627..21385
                     /locus_tag="U1335_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00266 family protein"
                     /protein_id="HEM5231025.1"
                     /translation="MSDNRMKYTIDSNMQFPLVEIALEAGESAYIQQGSMVYHTPSVT
                     LNTKLNARGGSGFGKLMGAIGRSMVSGESMFITQAISNSNDGKIALAPSTPGQVIALE
                     LGAEQYRLNDGAFLALDGSAQYKMERQSVGKAFFGGQGGLFVMTTEGHGTLLANAFGS
                     IKKLTLDGGSITIDNAHVVAWSRDLDYNIHMENGFLQSIGTGEGIVNTFTGYGEIYVQ
                     SLNIETFAQVIGNHIVGAGGDGGGGSTSLLDAIF"
BASE COUNT         5742 a         4350 c         5128 g         6192 t
ORIGIN      
        1 cacaaaaaat gactgcacaa gaaatcattg cttttatcgg caacgctgtg aaaaagacga
       61 ctgttaaagt gacctttgaa agagaactgg caggtccagt tcctgctgag gtgacaaaac
      121 taagcaatgt cctcttcggt gactggaagg acgttgagcc actcttggca aatttgactg
      181 agaatgtgga ttatgtggtg gagcaagacg gccgcaattc agctgtgcct ttgctggaca
      241 aacgcaacat taacgcccgt atcgagccag gtgcgattat ccgtgaccaa gtgaccattg
      301 gtgataatgc cgttatcatg atgggggcgg tgattaacat cggtgcggaa atcggtccag
      361 gtaccatgat tgacatggga gcgattttgg gcggacgggc gaccgttggt aaaaacagcc
      421 acatcggtgc aggtgcggtc cttgcaggtg ttatcgagcc agcttcggct gaaccagttc
      481 gcgttggtga caatgtcttg gtcggtgcca atgctgttgt catcgagggt gtgcaaatcg
      541 gtagtggctc tgtagtggca gccggtgcta ttgtgaccca agatgttcct gaaaacgtgg
      601 ttgttgcagg tgtgccagcc cgcattatca aggaaatcga cgctcaaacc caacaaaaaa
      661 cagccttgga agaggctttg cggacactct aagaggtagc tatgctagat ttaattgcga
      721 cacgccgggc cctccaccag attccagagc tgggcatgga ggagttcaag acccacgcct
      781 ttcttatgga aaccattgaa ggtttacttc aagattgctc ttttgcccaa gtccgcactt
      841 ggaagacagg aatcttggtc tatctgacgg gctctgctcc agaaaaaacg attggttggc
      901 gggcggatat tgacggtctt ccgatcgtgg aggagacggg cctggacttc aagtccctcc
      961 acccagacag gatgcacgcc tgtgggcatg atttccacat gaccattgcc ttggggcttt
     1021 tggagaaaat ggcagagcag cagccgagaa acaatcttct cttcctcttt cagcctgcgg
     1081 aggaaaatct agcaggtggc atgctgatgt atgaagcggg tgcctttggg gattggttac
     1141 cagatgaatt ttatgggctc catgtccgac cggacctcaa agttggtcaa atggccacca
     1201 accgtgcgac cctctttgct gggacctgtg aagtcaagat acggtttaca ggaaagggtg
     1261 gccacgcagc atttccccac accgcaaatg acgccttggt ggcagcaagc tactttgtga
     1321 ctcaggtgca gtcggtggtc agccgtaacg ttgatccgat tgagggggct gtggtgacct
     1381 tcggctccat gcacgcgggt acgaccaata atgtcattgc ggaaacggcc ttcttgcatg
     1441 gcaccattcg ggctttgacc cagagtatga gtcttctggt gcaaaagcgg gtgcgagaag
     1501 tggcagaagg aatcgccctg tcctttggag tggatctgga catcgagctc aatccaagcg
     1561 gctatctgcc tgtggagaac aatccccagc tggctgatga actcatgacc tactttgatg
     1621 gtgttgacgg agtggagatg attgactgcc cacctgctat gacgggtgag gacttcggtt
     1681 acctgctcaa caaggttcca ggtgttatgt tctggttggg tgtggatacg ccttatcccc
     1741 ttcacaatcc tcgtctcagt cccaaagagg aagtgcttcc ctttgctgtg gataagttga
     1801 gcggtttttt gaaaataaaa gcaaattaga ctggtttttc cagtcttttt ctgaaaagaa
     1861 aggagtttct gtggataaaa agagcattcg gcaagaggtc ctgcagagct tgaaagacct
     1921 gactagtagt cagcgaacaa gatggagcca gcagctaacg gaacgcctcc ttgcttcgga
     1981 ggcctatcaa ggcacaaagt cgcttgggac ctacctttcc atgccccatg agttcgacac
     2041 ttcttacctg attgagcagg ctcaaaagga tggcaagcag attttcattc ctaagaccta
     2101 ttcacaaggg cgcatggatt ttgtagaata taatcctgat gatttggtga aatctaggat
     2161 tggagtttgg gaacctggga cttattcaca acctgtggat aagtctgtag ttaagttgat
     2221 ccatgtgcct ggtttagctt ggaatcaggc aggttttcga gtgggctatg gaggtggttt
     2281 ttatgatcgc tacctagcag attatcaggg gaaaacagta tcgaccttgg cagactttca
     2341 agtctatgat ttcgaaccag atgtatttga tattccagta aaggagttgt tgatttttga
     2401 agaacttttt tgataagcgc taccctgtga ccaatggctt gttggcagtc acggctcttg
     2461 tttttctttt gatacaagta tttcgatttg ggcagacgac ggcagcttat acgatttttg
     2521 agtttggagg tatgtatggt caagttgtgc ggtatgatcc gactcagttg tggcggttgg
     2581 tgtcaccgat ttttgttcat attggctggc agcattttct gtttaatagc tttactctct
     2641 atgccttggg ttatcagtta gaaggactgt ttggctcacg gcgcttcttt ctcctttatc
     2701 tcttgtctgg gatagtgggc aatctttttg ttctcttttt tacaccagat gtagttggtg
     2761 caggtgcctc gacctcgctc tttggtcttt ttgcagctat ggctctgttg aggaaattta
     2821 gtcgcagtcc ctatctacag gttcttggtc aacgctacat ggtccttttg ggattgaact
     2881 tggttttggg actttttaat ccaaccatta gtatggcagg acatattgga ggagctattg
     2941 gaggttgctt ggttgtgatg ttccttccac ctcttgtgga aaaagatctt tttacaggaa
     3001 aacagatttt tttcagtttc attggttatt tgggtttgat tgccttgcta ctagggatat
     3061 tctatttgat gtaataaaaa aactagcgct tgctagtttt tctttgtatc taattttttt
     3121 ccaagatcga tcaagtattg tttcaaatca tcttttactt gagggtgttg gagagcgtaa
     3181 tcgatagaag ttttcatgaa accgaactta tccccaacat cgtaacggct gcctttgaat
     3241 tcacgagcga acacgcgttg tgttttattg agtgtatcga tagcatctgt caattgaatc
     3301 tcgttcccgg cacctggttt ttggttttct aaaatctcaa agatttcagg agtgagtaag
     3361 tagcgtccga taatagccag gtcagaagga gcatcttctg gttttggttt ttccacaaag
     3421 gtttccacac tatagagacc gttgatacct tcaccttgtg gagcgataac accgtatgca
     3481 gaaacttctt catgaggaac tggcataaca gcgatggttg aagcatgtgt tttttcatag
     3541 tcgttcatga gttgcttggt caatgggaca gcttttgtat ctgtgatgtc catgaggtca
     3601 tcgccgagca tgacaacgaa aggttcattg ccaacgaaag ccttggcttg taatacggcg
     3661 tctcccaaac cttttggata gctttggcgg ataaaatgaa gacggatagc agttgcttcg
     3721 tcgactaatt ttaaaagatc atttttgcct ttttctttta ggttgtactc caattcaaag
     3781 tttgagtcga agtggtcttc gatggaacgt tttgatttgt tggttacgac caagatatct
     3841 tcgataccag atttgagggc ttcttcaaag ataaattgaa gagttggctt gtcaacgatt
     3901 ggcaacattt ctttggcaag agccttagta gcaggtagaa aacgagttcc taaacctgca
     3961 gctgggataa cagcttttct aacttttttt gtcataatgc aatctccttt ttattaagac
     4021 cattcatttt cgtggcggaa ttcgccggac atgatttctt taatagcatc ttgtatgcta
     4081 gcaccctggt aaataacgct gtaaatggct tgggtaatag gcatgtaaac atctaattct
     4141 tgagccagtt cgtaagctgc tttggtagta gaaattcctt cgataaccat gcccatattg
     4201 gcttcgatat cttcgagttt ttcaccctta ccaagcaaat caccagcccg ccagttccgt
     4261 gagtgaacgg atgtacctgt aacaatcaag tcaccgacac cggacagccc actgtaggtc
     4321 aagggattgg cccccatggc aacgcctaga cgtgtgattt ctgtcaaacc gcgagcgata
     4381 atagctgcct tggcattgtc gccataacca agtccgtgta aagcaccagc cccaacggcg
     4441 atgatatttt tcaaagcacc agcagtttct acaccgatga catcattgtt ggtgtagagg
     4501 cggaagtagt tgttgctaaa gaggttttga acatagctgg ctgtttccaa gtctttagaa
     4561 gcggcagaaa tcaaggtcaa gtcacgaaca atggtttctt ccgcatggct aggacctgaa
     4621 acaacaacga tttcagagcg aagatcagca ggaatttctt cttctaagac ctctgacaag
     4681 cgtttgtggc tatcaggttc caaacctttt gaggcatgca tgacaatcac cttgtgcttg
     4741 agagcttggg ccacttgctt ggcaaccaga cgggttacct tggtcggcac aacgaataga
     4801 actgcatcca caccgtttaa ggtttctgct aaatccttgt agcctgtgat tttatcatct
     4861 aggacaatat ccttgaagta gcgagtattg gtatggtgtt cattgatttc gtcaatttgt
     4921 tcagggatat ttccccaaat acggacagta tgaccgttat cgttgagaac ttgggcaagg
     4981 gcagttcccc atgagcctgg tcccaagaca gcaatggttt gtttggtcat agaaaatcct
     5041 ttctaggttg agttgatttg tctatattat atcataatcc atagataaaa tcttgcaagt
     5101 catgtcaaat attgctgtta ggaagaaaaa tgttagcagg gtgagatttg aaaataggtc
     5161 ttattttcag aaaatagaag ttaaaatgat tgacaatagt tcttaagaga actataatag
     5221 ttcccatgct aattaattga ttggaaagga gtcattgtgg gacataccat tgcagatttt
     5281 cggaacttgc tcaatcagat tgaacaaatt agtgaaacca ttgctaaaga atacgatgtg
     5341 gagcacctag ctgggccaca gggctgggcc ttgcgtttca ttgcggaacg gtcagacctt
     5401 gaaacctttg tcaaagatat agaagcagaa ttaaagattt ccaaatccgt tgccagcaat
     5461 ctggtcaagc gaatggagaa aaatggcttt atccaagtcc tgccttctca ggttgacaaa
     5521 cgctacaagc ggttggtttt gacagagaag ggacaaggga aaatctgtca cctgaaagcc
     5581 ttccatgaag aaatgcacca ttcacttttt tggggcattc aaaaagagga ctttgatttg
     5641 gttaaacagg tggctaatca attaaaagaa aatattcaac actataagga gaagaatcat
     5701 gtttaaagaa gccattttac gctataaatg gtacgccttg gcatcggtct tgctgacgtc
     5761 aattgtcgtc gcaacgacct tgatgcaacc tagttatttg caggatgtct tgacagcagt
     5821 cttggccaat gacaaggatg aaattgttcg cgtgggcaaa ttactgctga ttattgctgg
     5881 aattggtctt ttggcagggc ttgtcaatac cattgctgca gctaagattt cacaaggggt
     5941 atctgcagat attcgtgaga agacttttcg gaagatccaa agcttctctt atgctaatat
     6001 tgaagagttt aacgcaggga acttggttgt tcggatgact aacgatgtca atcaaatcca
     6061 gaaccttgtc atgatgctct ttacagtgtt gatgcgggtt ccattgttgt ttgttggagc
     6121 ctttatcatg gcggtgcgga ccatgccaga actctggtgg atgattattc tcatggtggt
     6181 cttgattatg gccattatgg cagttgtcat ggggcagatg ggaccacgtt ttggaaaatt
     6241 ccagtccctc atggacaaga tgaacagcat tgctaaggaa aacctacgtg gaatccgtgt
     6301 ggtcaaatcc tttgttcagg agaaaaacca gtacaagaaa ttcaaagatg tatccaatga
     6361 actcttggac ctcaacctct ttatcggcta tggttttgct atcttgcagc ctttaatgat
     6421 gttcatctct tacatggcga tatttgcctc gctttacttg gtgtctggga tgttgaaaaa
     6481 caacatggaa gcagttggtg gctttacttc ctttatgagc tacctcatgc aaatcatgtt
     6541 tgccattatc atgactagtt tcatgggcat gcaggcttca cgtgctgcca tttctattaa
     6601 gcggatcagc gaggtgttgg atacggagcc tgctatgacc ttcaaggatg tggcggatga
     6661 agaattggct ggtaagattg tctttgacaa tgttagcttt acctatccac acgatacgga
     6721 gccgactttg aaacatatct catttgagat tgagccaggt caaatggtcg gtgtggttgg
     6781 tgcaacaggt gcgggtaaat ccactcttgc tcaactgatt ccgcgtttgt ttgacccgca
     6841 agaaggaacg gtatccatcg gtggtcgtga cttgaaagaa gtcagccaga acaccctgcg
     6901 tgatacggta tcgattgtct tgcaaaaggc tattctcttc tcgggaacca ttgcagacaa
     6961 cctgcgtcaa ggggcacctg gtgctgatcg tgcaagattg gagcgtgctg caggtattgc
     7021 ccaagccaaa gagtttatcg accgcttgga tgacacttac gaaagtcagg tggaggagcg
     7081 tggaaataac ttctctggtg gtcagaagca gcggatgtcc attgctcgtg gggtgattgg
     7141 tgagccgaaa gtcttggtct tggatgactc aacttctgcc ctggatgcca agtctgagaa
     7201 actagtccaa gaggctctca accatgattt gaaggggaca accactgtca tcgttgccca
     7261 gaagatttct tctgttgtca aagctgataa gattttggtt cttgacgaag gtcgtctgat
     7321 tggccaaggt acccacgctg agttggtagc tacgaacgat gtttaccgtg aaatctacga
     7381 aacacagaaa gggagggagg aatagatgaa aacacttaga tttttctggt tttattttaa
     7441 acgctataaa ctgtcctttg ctgtgatttt tctagccatt gtgacagcga cttacttgca
     7501 ggttaagaca cctgttttcc ttggaaatgc cattacagaa atggggaaaa ttggacaggc
     7561 ttactttgct tcggtgcaaa tgggtcagtc agatttcaaa cctgacctgt ctgattttaa
     7621 cggggttatg ctcaatcttt tctttgccta tgcggcgacg gttgtggctt ccttgattta
     7681 caccctcctt ttcacgcgta tcgtggctca ttcgaccaac cgtatgcgta agggcttgtt
     7741 tggcaagctg gaacgcttga cagttgcctt ctttgacagc cacaaggacg gggatattct
     7801 ttctcgcttt accagtgatt tggacaatat tcaaaacgct tttaaccagt ccttgaccca
     7861 agtggtgacc aacatcgctc tttatgtcgg tatggttatt atgatgttcc gtcaggatac
     7921 tcgcttggcc ttggtgacca ttgcttctac gccagttgcc ttgattgcct tggtcgttat
     7981 catccgccta tcacggaaat atacggataa gcaacaggct gcggtatcta agctcaatgc
     8041 ctacatggac gagaaaattt ctggacaaaa agcgattatt gtacagggtg tgcaggaaga
     8101 gacgattgat ggtttcttgg aactcaatga agaagttcgc cgtacgacct tcaagggtcg
     8161 cttgtttggt gggattctct ttccatttat gaacggtatg agcttggtca atacggccat
     8221 tgttatcttt gcaggttcca gcattgtcct caatgatagt tcgctggaaa cagctgccgc
     8281 acttggtttg gtcgtgactt ttgtacagta ttcgcaacag tattaccagc ctatcatgca
     8341 ggttgctgcc agctgggcag aattgcagct agctttcaca ggagctcatc gtattcagga
     8401 aatgtttgat gagcctgagg aagttcgtcc tcaaaacgct ccgctattta ccgaattaaa
     8461 agaaggtgtt gaaattaagg acatcgactt tggctacttg ccaggtcaga aggtcttgga
     8521 caaggtgtct atctctgctc ctaagggcaa aatggtggcg gtcgttggtc cgacggggtc
     8581 tggtaagact accattatga acttgattaa ccgcttctat gatgtcaata gtggtagtgt
     8641 ggcctttgac ggtcgcgata ttcgggaata tgacttagac agcttgcggg ataaggtcgg
     8701 cattgtcttg caggagtcag tgctattctc gggtactatt gcggacaata ttcgcttcgg
     8761 tgatgaaagc atttcgcagg aaatggtgga aaccgcagct cgtgccaccc atatccacga
     8821 ctttatcatg agcttgccag agggttatga aacctttgtg accgatgatg agaatgtctt
     8881 ctcgacaggt cagaaacagc tgatttccat tgcccgtacg cttttgacag atccacaagt
     8941 cttgattttg gacgaagcaa cctctaacgt tgataccgta acggaagcca aaatccaaaa
     9001 agctatggag gctattatcg caggacggac cagcttcgtc attgcccacc gcctcaaaac
     9061 cattctcaat gcggacgaaa tcatcgtcct caaagacgga aaggtgatcg agcaaggcaa
     9121 ccacagccaa ctcctcaaac taaacggctt ctacgccgaa ctctaccaca accagtttgt
     9181 gtttgaataa tatatagaaa aataaacagc caagataagc agaccacaat ccttaaacgt
     9241 ttaggacgtg gtttatcttg gctgtttttg tggtaggctt actgctcaat atggttggtt
     9301 ttggtttgat tgagccaagc gtaggcgata ccgataaaga gaccggctcc gagccaattt
     9361 ccaaaaaaga ccacaatcca ttgacgaagg atattgatca tattgaaggc ttcgacattg
     9421 cttcgagtag cgttaaaagc taggagcatg aaagatgcga aattggcgac cagatgctca
     9481 ttgatgagga aaacgaacat aaaaatggag gaaatgatga caaagaactt agcagactgt
     9541 tctttgatga gcatgaagcc aagtattgcc atatttacaa acatattagc cgtgatccct
     9601 tcaataaaat tactccagtc agattttcca agtttgatgg taacggcatt gacgacaaag
     9661 ctcttatcag agagattgag gtaggagaag gactgattga agagccaggc tagaatagta
     9721 gcgcctacaa agttaaagaa agtacagtat agcagcatct gtgtcacttt tttccagcta
     9781 atttgcttat agtaggcacc agttgtgaga tacatcatgt tagaagtggc taattcacca
     9841 ccaaaaataa gaacaaaaac cagcccaata gcaaagatga aggtaaagac aaaacgcgac
     9901 aaacttggaa attgactggc aataacgtct gctccgataa taccgacagc tgttgacata
     9961 gtcaggtagg ctcctgcata catagaacgc aaggcatagc ggcctagact ttcgtcaaaa
    10021 agggcttctt tttttgaaac tgcagctgaa attttttctt gaaatggtga cataggaact
    10081 ccttgtgaaa tcattatcaa tattttgttt gaaaaataaa gtgggaagag ttcttcccac
    10141 tatatgtgaa cgattagtga gcggatgcac cagaatctgc atctgtcggt gtggaagtag
    10201 caggggcact accagcatct gatgcaccag aggttgcgtc aacatgtgca ggagctgcgg
    10261 cagttccaga accaccaacc aagcattgac cagtagcttc aagataccaa tctagccatg
    10321 gtttgaaatt aaagataatt tcattgatac cagcgtagga tccgtcagga tagtacatag
    10381 cttggtagtt gtgggtgttg ataatttcag caggggtacc gggtacaatg gtacgaacat
    10441 attcctggtt accattacgc aaggtaccga caacccattc aacattcttc atgcgggcag
    10501 gaggtagcgt accgtggaca gttgacaggc gatttcctac ttgagcaagt acccgtttac
    10561 ccaacatggt ttcaggttct tggtgactat tgttgtagta gaggaactgg ttattatcat
    10621 ctgcataggt caattcaaat ggcatcgcat tgaggaacat attgagttgg ttaacggtca
    10681 acagaccatt gtccagttta acataggtgt ctccctcaac tgcgttaacc aatttagaag
    10741 ccttttctag ccaatctgga tcatctggat ccacaccagt gatggtcgtc gcaatcggct
    10801 ttccacagtc caaatcttct ggtgcgattg gttttggttt tttcaatttg gatacaacac
    10861 cgacatactt gataaagttg tctagacagc tttctaagaa tttcacggtg ccttcattga
    10921 tgatattgcc cttatcgtca aaagcttctt tggccttacc aaggaggaat tcattacctg
    10981 gtagtgtgta agcattgaca cctggtgcat ctaaaatttt ccgtaggtga acttgggcac
    11041 gagaagttcc ttgatcgtag taagatgccc cgataatcat aactggttta ttttcgaatg
    11101 ggtgcaaatt aaagctgagc cattccagag tactcttaag ggcaggggta atggtatgat
    11161 tgtgctcagg ggtagcaata atgaccccgt cagcacgggt gattttgttg taaaggtatt
    11221 gaattgcaaa acaatcagac tggtcttcgt cctgattgaa cattggaaca tctttgattt
    11281 ccaaaagttc tagttcaaac ttcactttaa agtggcgttg aatgaattgc aatagcatgc
    11341 ggttataaga ttgatctgca tttgatccaa caattccgac aaatttcata gtatattcct
    11401 ctcttacagg ttttcccaat cgaagttttc agcttctttt tggagtaatt tttttgcgtt
    11461 agacagcttg ccagtcatgg tgacaaagag tcggaagtca tcaaagatgg catccagttt
    11521 ttgactagtt tctaaatcaa tgagctcccc attggcatca aaggcttgca aggaatgtga
    11581 caataaaaat tcatctggca agacagtggc cttgagttca ggagcgttga gaatttgacg
    11641 tagctgtagt tgggcacgag aggaaccaag tgttccataa gaagcaccag taatcataac
    11701 tggtttgttt aatagtggat agacaccgta tgatacccaa gcaagggcat tcataaggac
    11761 agctggaata gagtggtcat attcgggagt tccgataatg actccgtcag cagcctcaat
    11821 ttttgcgacc aattctttga caatttctgg taattctcga ttggctggtt tattgaagat
    11881 tgggagttcc ttgatttcaa ccagttcgat atctgcctta tcagcgaagt gctgttcaat
    11941 gtactgcaag agtttgcggt tggttgagcg agcggagttt gttccgatca gtcctagaag
    12001 tttcatagcg tcttctctct ttcctaaatt tgctaccttt atcatacccg tttatccgat
    12061 aaaatgcaag cgttttctga aaatgtgata aaattgttca aaaattcacg agttttttgg
    12121 tataatatta gtatgcaaag aatattctat ctagtatttg gttttgttag tttggtggtt
    12181 ggtgttattg ggattgtttt gccgatagtt ccgacaactc ctcttttact tttggctggt
    12241 ttttgctttg cgagaagttc aaaaaggttt gaaaaatggc tacgcaatac aaaaatttat
    12301 caattttacg tagctgatta cgttgagacc aaatccattt cccgtaaacg aaaaaagcaa
    12361 atcatctggc aaatttactt actcatggca atttctatct ggctggctcc tattttattg
    12421 gtcaaaatgg gactgggact attaacaatc ttcatcactt actatttgtt ttgggtcata
    12481 ccggagaaat aaagtcagat ttgagggttg aacattgtcc tcaaagacgg aaaagtgatt
    12541 gagcaaggca accacagcca gctcctcaaa ctcaatggct tctacgccga actctaccac
    12601 aaccagtttg tgtttgaata aagaaaaagg tctgaaacca gatgagttgg ttttagacct
    12661 tttctttgtt tagccgttgg aaatggcatc tttgaacatg ataacctcgg cagagtcgat
    12721 accgtattcg gataagtcat agactgtttt ttcttgggta tcgtagttgt atttgactaa
    12781 tttcgtatca aagaggtagt agtaatgacc gtcgtaaaaa gtagagaaag gattccatgc
    12841 agcgtgatag tcattgcgat caaactccaa gatacgttgg tcaccagttg ttaggttgat
    12901 caaggtccat gtgtaggggt caacttggag ttgatcgtgt aagacctgta atacattccg
    12961 ttctttatcg taatgtaatt cggttggagc cagtgttttt aagggaataa attccttttc
    13021 tcctgtctta tagttatacc gtagtatgtt ttttccaacc atatcaacaa tatcctcttt
    13081 ccttgtccaa gtatatgtct cggataagta gaaggtatca tcacctattg gaattaaatt
    13141 atggtaatta tggtataagt caggggctcc gactccttgc aggtcaaacc gttgtaagac
    13201 ctcaagatcc tccgatagtt cccaaatctc atgaaaaaca gtaccatggt aattcacggg
    13261 gtcgttcatc agtttattca aatcttcaaa cttttcccca gagatggaaa gatagagttt
    13321 cccctctttg attattatgt cgtagaccat cagttgtccc cattcttcaa taccgaaatc
    13381 cttttgcagt attagctcaa agtcagtatc gtacttgtaa atttcgacac ggtctgaaaa
    13441 tatggcggca gagtagaaaa atttaccgtt gaaagtagca ggataggcat cttttccttt
    13501 tggtttcact attttttcca tttttagttt ttctttgtca agacggtaat gtttgaattc
    13561 gacaggatag gtgtgtagta ttgttccgta gatcatcccc tgactttcaa aaaaatccac
    13621 attttgtagt tgttccccat ctgaaaaaag ttttcggtct tctatttttg ttaacttgcc
    13681 ttgttcatca ttaaaggtaa tcgctctttg gtcatcgaaa atcacaaagt cgtagtcttt
    13741 agcgtcattg gtcgctattg tgctacaggc tgagagtaga aagagagata agatgctgag
    13801 taggattttc ttcattgcca taggatgacc tcctaactat tttttgcgat agataacagc
    13861 agtattggaa tgatcgcgta gctcaaatgg gtggatggca gcaccatagt cgttcagact
    13921 gatatctgct ttagagccaa cagtgtcacg gtaggctgcc catactagct gagagcagta
    13981 aaagcgatca cgtctccaaa cgtcataaaa gttgaaatta tagggtttgc cgatttggtt
    14041 agcagcccat tgagctgcag ctcggtcttg tgctaaggtt gtatttcgga cctctaattg
    14101 ccacacttga ttggctttag gccatgtttt atgtttggcc tgcactccgt cagctggatt
    14161 tgactcaata atataggagt gccgatttcc ggtacccata ataccggcgt gaccatgtgt
    14221 aatcactccg ctactcgttg catcgctgac cacaatcaca cctgcacgag tagaccagga
    14281 gcccacaggg gcacgtgtat agtctttgct atctgcttcg ataggtttgg gcacttcgac
    14341 attccactcg gccatctgtt cttctgtaaa caaatcgtag tcatggacaa tttcttgaga
    14401 tgaggaaaaa gcagagaggt cttctgcatg agcaatctga gtagacgcta gacatagagc
    14461 tgctaaaaat gctgtagcaa gtaataattt cttcttcatt ttgattcttc tttgcagtgt
    14521 taaaagttta tgattcacca ctcaaaatat tatttcctaa aatatgctcc tttctttttt
    14581 agagtggtga gatagtggta gcttatttat tgataactgg ccaaatgata acccatccac
    14641 cccctaaaag ttgaggggct agtaggatgg ctgagtaagt taaaagcaag agatagtttt
    14701 tccaattttt cataaaagtg cctcctatta ttttgtttgt ttttctttac tattatggta
    14761 tcatagaata aatgcaaaag atgaaaacgt aaacatttct cacatttttt ggaggtcttg
    14821 catgaaatgg gattttggaa cagtcttaaa agaaattcgt aagtccaaag ggcttagcca
    14881 gcaggatgtt tgtggagatg ccttgtcacg gacgacccta tcaaaaattg aaaacaacaa
    14941 ggagtaccct accattgccc acttttccca tatcctccgt cagttggata tgacctttgc
    15001 agagtttgac tatatttgcc atgcctatca gccttcggag cgttcgtcta tcatccattg
    15061 ctttgaaaat ctgagaggac aatttttttc tgaatcaaac tgtcaagatt ttttgtacca
    15121 agtagagcag tatttgaaga agcaagaaga tatacgggtt caacgaattg agcaacaatt
    15181 acgcttaatc ttatccattt atcaaacggg agatggggag cggaccagac agttggggca
    15241 agcactttgg aaggaattgg agaagtcaga cacttggtat ttagctgatt ttcgtaagtt
    15301 ggggttggtg cttcctatca ttcctgtatt tcatttaaaa ggctttgtag ataaaatctt
    15361 gctttccttg gacaagtata aggacttcag agatgtacag gttagtcagt ttgcttttct
    15421 ttacaatcta tcgactgttt tgttgaaaaa tgaagagtat caactttgta tttcagtaat
    15481 ggagagagtt tatgctatgg ctcaggaaag tatgcggatt gattatgtag gcatggccaa
    15541 tgtccgtatg ggtatctttc agcaggatag agggatggtg gataagggac ttgccattct
    15601 ccgagctgca gacttgctag agttggttga acagttggag aaagaagtcg aggagtgttg
    15661 ggagattttt ggctcggaag cggtttgaac tgcttgagct agtttatagt agtagaggct
    15721 ggacaaaaag accagtctcg cttctaatgg ttcgtgtcaa catctcagcg cagtggttga
    15781 ttggcagatt tgttcgtgtt ttacactcca aatctgacct aatcaactgt gcgggggcgg
    15841 gaatacgaac tctttttttg accagtcgag ttctttcccg ctcccttttt gttgaacatc
    15901 gcaggctttt acgaattagt gtataataga cctatggtta gaatacgagt tgtagtgtct
    15961 atctccgcaa ggttgaccaa gacttgtggc tacgtgcaga ctgctttgat gacgagtatg
    16021 ccttcccctt aacaacactt tttgcatttg tgacgaaaaa tgcgaatgaa tctgtagtag
    16081 ggagtgagcc ctaaataacc aaagaggcaa atatgaagga attacaattt ttaatttacc
    16141 gagcagaaaa tgatcaagaa aaggctagtg tcattgtcag cgatgagacg atttgggcta
    16201 gtcagaagga aatggcaaga ttgtttgatg ttggtgtacc agctatcagc aaacatttga
    16261 aaaatatttt tgaagaaggc gaactagatg agcattcagt tatttccaaa atggaaacaa
    16321 ctgcaagtga tggtaaaaat tatctaacta gttattacaa tctcgatgcc atcatttccg
    16381 tcggttaccg tgtcaattct caaaaggcta ctaagtttag gcagtgggca acgactgtac
    16441 ttcgagaata catgattaaa ggttttgcca tggatgatga gcgtttaaag caaggcgaaa
    16501 acttgttgga aaaagactat ttccgtgagc ttttagaacg agttcgttct atccgtgcta
    16561 gtgaacgacg aatctggtta caaatcacag atatttttgc ggagattgcg attgattacg
    16621 atgctaatag cttggtgacc aaacaattct atgctcatgt gcaaaataaa tttcattatg
    16681 cgattacagg taaaacagct gcagaaatta tttatgaaaa ggcggaccac accaaagtaa
    16741 acatggggtt ggtaacctgg aaacactctc ctgatggacg tattttgcaa tcggatgctc
    16801 ttgtggctaa aaattatctg aacgaaaagg aaattcgttc gctggaacgt agtatttcgg
    16861 gctactttga ctatctggag cgacaaattg agcaaggaaa gacccagacc atgcaagatt
    16921 tggcagatag cattgaccga tttttagcct ttcaagacta tgaactctta gagggacatg
    16981 gtcaaattac aaggcaggta gccaaggaaa aagctcggtc agaatatgca atttttaata
    17041 agacccaaaa gataaattct gactttgaaa aattactaga agatttatct tcaaaataag
    17101 cactcgaaag gaaaaatatg aaaatccgtg gattcgaact ggtcagccag tttacagatg
    17161 aaaacttatt gccaaaacgt gagacagctc atgcagcagg ttatgacctg aaagctgcgg
    17221 agagggtcag cttggagcca ggcgagatta agttggttcc aacaggtgta aaggcctata
    17281 tgcaggccaa tgaggtcctc tatctctacg accgctcttc caatcctcgc aagaaaggct
    17341 tggttctgat taactcggtt ggagttatcg acggcgacta ctacggcaat ccagccaatg
    17401 aaggtcatat ctttgcccag atgcgaaaca tcacagaaga aaccgttgtg gtggaagctg
    17461 gcgagcgaat cgtacaggct gtttttgccc ccttcctttt ggctgacggc gaccaggccg
    17521 acggcgttcg gacaggtgga tttggctcga cagggaaata gactactatg cagattctct
    17581 ttgtgcggca ttccgagccc gactacagta tgtttgacca gcatgataat cctcggctgt
    17641 atgcaggttt tggacgggat ttggctcctt taactgaaaa ggggcggact ttagctcagg
    17701 aaattgctag taatcctatc ttttcccaag ctcaagtagt cattgcttca agcgtcacac
    17761 gggccttggg gactgcgacc tacattgctc atgcccagca actacctctt ctggtcgaac
    17821 ccttttttca tgagtggcga ccagacctga cggggcaaaa tgccagtcaa gatgaggctg
    17881 tcttagctca tcgattattt ttggaaaatg gcggagcggt gcccgagtct tctcctgttc
    17941 gttatgagac tgctgcggag atgagagagc gatttttaca ggcccttgaa aaatacaaag
    18001 cctatgaccg aatcgttatc gtctgtcacg gtatgctgat acgccagttt gttcccaaag
    18061 aaaccatagc ctactgcgaa atcctagaat atactctata ggaggaaatc atcatcgcta
    18121 agaaaaaaac aacctttgtc tgtcaatctt gcgagtacca ctcgcccaag tatctgggcc
    18181 gttgccccaa ctgtggctcc tggtcttcct ttgtcgagga agtggaggtt gcggaagtca
    18241 agaacgagcg ggtcagcctg acaggtgaga agacccgtcc gatgaagctc aatgaagtgt
    18301 cgtccattca agtggctcgt accaagacca acatggaaga gttcaaccgc gtcctcggtg
    18361 gcggtgtggt gccgggcagt ctagttctca ttggtggcga tccagggatt gggaagtcta
    18421 ccttgctcct gcaagtatcg acccaacttt cgactattgg caccgtcctc tacgtgtcgg
    18481 gggaggagtc tgcccagcaa attaagctcc gtgccgagcg cttgggcgac attgacagcg
    18541 agttctatct ctatgcggag accaatatgc agagcattcg gaccgagatt gagaagataa
    18601 aaccagattt cctgattatc gactctatcc agaccattat gagccctgac atctccagcg
    18661 tgcaaggctc tgtcagtcag gtccgcgaag tgaccaatga gcttatgcaa attgccaaga
    18721 ccaacaatat cgcaaccttt atcgtcggcc acatgaccaa ggaaggaacc ttggctggac
    18781 cgcggacctt ggagcatatg gtagataccg ttctttattt tgagggcgag cggcagcaca
    18841 ccttccgtat cttgcgggcg gtcaaaaacc gctttggctc taccaacgaa atcggcattt
    18901 ttgaaatgca gtcgcagggc ttggtcgaag tcctcaatcc aagtgaggtc tttctggaag
    18961 agcgtctgga cggggcgact ggctcggcta ttgtcgtgac catggagggt actcgcccca
    19021 tccttgcgga agtgcaggct ctggtgacgc cgaccatgtt tggcaatgcc aagcggacca
    19081 cgacaggctt ggatttcaat cgtgccagct tgattatggc ggttttggaa aaacgggcag
    19141 gcctgctcct ccaaaaccaa gatgcctacc tcaagtcagc aggcggtgtc aaactggatg
    19201 aaccagccat tgacctagcg gtcgcagttg cccttgcctc cagttacaag gacaagccaa
    19261 cccacccaca agagtgcttt ataggcgaaa tcggtctgac aggcgaaatc cgtcgcgtca
    19321 atcggattga acaacggatt aacgaagccg ccaaattggg ctttaccaag gtttatgccc
    19381 ctaaaaattc cctgacagga atcaaggtac caaaggaaat cactgttgtc ggcgtgacaa
    19441 ccattggcga agtcttacag aaagtgttta agtgacgaaa atattcgggg gagtgggaaa
    19501 gaacttgaca ggtaaaaaga gttcgtcaac aagtcctttt ttccagttgt tgagctgaaa
    19561 cagtctatcc ccagactgtt tcactcccac cccccgcaca gctcaaactg tctgggagac
    19621 agtttgaggt tggagataaa gcgaactttg ttcgcaacaa tcgtaatggt cagatttgga
    19681 gtgttgagca cgaacaaatc tgccaatcaa ccactgcgct gagatgttga cacgaactct
    19741 gagaagtgat gctaagcttt ttattactcc tctttttgcg acaaatagtc gggaatatga
    19801 taagctagaa ccaacttatt ttctgaaaaa ttcagaaatt cttatcagac aaggaggtcc
    19861 tatgtcttat tttcaaaact ttatgaaggc caacaaggcc tacgttgacc tgcatggtac
    19921 ccatcatctg ccgcttaagc ccaagaccaa ggtggctatc gtgacttgta tggactcacg
    19981 gcttcacgtg gcgcaggcct tgggcttggc tctgggggat gctcacattc tgcggaatgc
    20041 gggtgggcgc gtgacggagg acatgatccg ctcgctagtc atttcccagc aacaactcgg
    20101 cacaagggaa atcgttgtcc tccaccatac agactgcggt gcccagacct ttaccaatga
    20161 ggactttgcg acccaactca aacgggattt gggagtggat gtggccggtc aggactttct
    20221 tccttttaca gatattgagg aaagcgtgcg ggcagatatt gcccttttga aacaatctcc
    20281 gctcatacct gacgacgttg aaatttttgg tgcggtttat gatgtggata cgggtcgtat
    20341 gacagaagtt atctagtctt tcagtttatc ttttattacg tcgttaactc gctttgctgt
    20401 actctacgaa cgttacttac tgtcgtaagt atgatttcca accttcaaca gtccgctgga
    20461 ctattgaagc aacctgcagc tcacttccta gtgctgaaag actatgtaat aaaaatggag
    20521 gaacagatag tgcggtttcc cgtatttttt ataaaaatac ttgacagggt tttgttttag
    20581 ttgtagaatt gtgttataca aataacacaa aaaaggagac cttctcatgt cagacaaccg
    20641 tatgaaatac actatcgaca gtaatatgca atttccttta gtggaaattg ccttagaggc
    20701 tggagagtca gcttatattc aacaggggag catggtctac catacaccga gcgtgacttt
    20761 gaataccaag ctcaatgcgc gtggtggttc aggttttggt aaattgatgg gggccatcgg
    20821 tcggtcaatg gtatcaggcg aatctatgtt tatcacgcaa gccatttcca atagtaacga
    20881 tggaaaaatt gcacttgcgc cttcaacgcc aggtcaggtt attgccttgg aacttggtgc
    20941 agagcaatat cgactaaatg atggtgcctt ccttgctctt gatggttctg ctcaatataa
    21001 aatggaacgc cagagtgttg ggaaagcttt ctttggcggt cagggtggac tctttgtgat
    21061 gactacagag gggcatggca cacttttggc gaatgcgttt ggttctatta agaagctaac
    21121 tttggatggt ggaagtatca ccattgacaa tgctcatgtg gttgcttgga gtcgtgattt
    21181 ggactacaat atccatatgg aaaatggttt tctccaatct atcggtacag gtgaaggaat
    21241 cgttaatacc tttactggtt atggagaaat ctatgtacag agtttgaaca ttgagacctt
    21301 tgctcaggtc attggcaatc atattgtcgg tgcaggtggt gacggcggtg gtggaagcac
    21361 atcattgctg gatgcaattt tttaatagtg gagaaataga agctaaggac ta
//
LOCUS       DASGAC010000018        21026 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.018, whole genome shotgun sequence.
ACCESSION   DASGAC010000018 DASGAC010000000
VERSION     DASGAC010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 21026)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21026)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21026
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.018"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            37..840
                     /locus_tag="U1335_000518"
     CDS             37..840
                     /locus_tag="U1335_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEM5231026.1"
                     /translation="MKKILALALASSILLTACTNNSTANSSSSTASSSSSSSTTTADT
                     TASSQYAKDLAYAINNPKATFPQLSNEIGENEAAVKIKTTEGDITIKLFPEQAPLTVE
                     NFLTHAKEGYYNGTIFHRVIKDFMIQGGDPLGNGTGGESIWAGKDTTIDAGNGFKDEI
                     SAFLYNIRGSLSMANAGAGTNGSQFFINQNTTDMSSQLSSSSYPGKIIDAYKNGGNPN
                     LDGKHTVFGQVIEGMDIVDKIASVETDTSDKPKTDVKIESIEIIKDYTN"
     gene            complement(895..1440)
                     /locus_tag="U1335_000519"
     CDS             complement(895..1440)
                     /locus_tag="U1335_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM5231027.1"
                     /translation="MKQNQLRQLTEISLFAALICVVVFFIRIPFGSQFVHLGNALVVV
                     GVLIFGAKKGAAAASLGLGIFDLLSGYASVAWITILESLIVCFILHLFYEKFLKENDR
                     LTNIILVGIVAAITKIILNLLKYTLTGSFVGGLTFSASFLAALGRILGTYGTAITTII
                     AVPILYQVFKGLYNGKQGKQL"
     gene            complement(1437..2285)
                     /locus_tag="U1335_000520"
     CDS             complement(1437..2285)
                     /locus_tag="U1335_000520"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine kinase"
                     /protein_id="HEM5231028.1"
                     /translation="MVQRLLLANDLPGVGKVALATSIPIAAACQVETILLPTVLLSSH
                     TGGFPDVVVEDMTDLNQAYFEQWKNLNLELAGILSGYCRNPQQLSQLAMYAKQTETPL
                     IVDPVMGDGGKLYTGFTPTYVEAMKELIQSAKLILPNLTEAALLTGREYVGEYYDFSV
                     IEDLLEALAKQVTADIVLTGISFDDSQIGVAYFQQETGEITTYMSKKYPANFFGTGDI
                     LSTLLAVATIQQINLHQAIPLALDFIDKSLQQTLSLNRDLKFGIYFEPFLAELQQAFQ
                     TLKEKL"
     gene            complement(2482..3171)
                     /locus_tag="U1335_000521"
     CDS             complement(2482..3171)
                     /locus_tag="U1335_000521"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HEM5231029.1"
                     /translation="MKFGIIAAMPQELKILVEHLQDATEIDVLGRTYYQGRIGQHEVV
                     LVQSGIGKVMSAMSVAVLADRFSVDVIVNTGSAGAVAEGIAIGDVVVANQLAYHDVDV
                     TAFGYAYGQMAGQELYYPADQVLLEQLRTVLAEQEMISHVGLIVTGDSFIAGQDRIAS
                     IKEHFPEVLAVEMEGAAIAQAAVNTGKPFLVIRAMSDTAQGDANITFDEFIIQAGERS
                     AQTLIAFLEKN"
     gene            complement(3180..3500)
                     /locus_tag="U1335_000522"
     CDS             complement(3180..3500)
                     /locus_tag="U1335_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231030.1"
                     /translation="MGKPLLTDEILEKAKKKQYSDQSSQFGHYRPNQDISMDDALFDP
                     YLEEDYQGYEEGQTLRIPVKPTVVKSRRIETIKREAFRSKVNKILFWVIILLIIFIIA
                     VLFI"
     gene            complement(3511..4056)
                     /locus_tag="U1335_000523"
     CDS             complement(3511..4056)
                     /locus_tag="U1335_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM5231031.1"
                     /translation="MNFEEKTIERTEIFKGHIFDVVVDDVALPNGGTGKRELIFHKGA
                     VCVLAVTPEGKMILVKQYRKAIERTIYEIPAGKLELGEEDTLEDAALRELEEETGYTS
                     DKLTLLADFYSAIGFCNERIRLYLADNLIKVENPRPMDEDEVIELHEVTLEEALNLVA
                     TGDICDAKTIMAIQYLQLMRK"
     gene            complement(4065..5447)
                     /gene="glmU"
                     /locus_tag="U1335_000524"
     CDS             complement(4065..5447)
                     /gene="glmU"
                     /locus_tag="U1335_000524"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEM5231032.1"
                     /translation="MSNNYAIILAAGKGTRMKSDLPKVLHKVAGITMLEHVKRAVDAM
                     EPAKTVTIVGHKAELVQAVLEGQSEFALQSEQLGTGHAVMMAEPALAGLEGQTLVIAG
                     DTPLITGESLKNLINFHVSHKNVATILTAQTDNPFGYGRIIRNADGEVQKIVEQKDAN
                     DFEKQVKEINTGTYLFDNKRLFEALKDINTDNAQGEYYLTDVISIFRQAGEKVGAYVL
                     RDFDESLGVNDRVALATAEAVMRKRINEKHMINGVTFVNPEATYIDIDVEIGAEAVIE
                     ANVVLKGQTVIGERTVLTNGTRVRDAKIAADAVISNSDIEESVIEEGVTVGPYAHIRP
                     GSLLKKDVHVGNFVEIKASTLGQGTKSGHLTYLGNATIGNNVNVGAGTITVNYDGKNK
                     FKTTVGDNAFVGSNSTIIAPVTIGDNALLAAGSVITKDIPEDAIGIGRGRQENKEGYA
                     TRFPFHPSQK"
     gene            complement(5557..5871)
                     /locus_tag="U1335_000525"
     CDS             complement(5557..5871)
                     /locus_tag="U1335_000525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231033.1"
                     /translation="MDKKRVIELLDQLSPILAGKEEEIGKEKTGKLQSALLVAKEDVV
                     SKDGVALATILSGFVQAVSNASLPGSNLRFTDQERPVWEEFKALTEQAREDGKRGLHL
                     IF"
     gene            complement(5938..6411)
                     /locus_tag="U1335_000526"
     CDS             complement(5938..6411)
                     /locus_tag="U1335_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HEM5231034.1"
                     /translation="MTPTELWQEFLTINPQAGPEPEAWAFGAEADRLADLVARGIKSS
                     TSSAHALYAVEGEEIPKAGGYDIILDGQGQAVCIIQTTKVYVMPFSQVTEEHAYKEGE
                     FRQGGDLSDIKAKSLIHWRQVHEELFTIWLAEAGLSFSKDMLVVCEEFELVYPKM"
     gene            complement(6408..6959)
                     /locus_tag="U1335_000527"
     CDS             complement(6408..6959)
                     /locus_tag="U1335_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5231035.1"
                     /translation="MILETNRLLLRPWSETDAADLFSQASHPEVGPAAGWPVHQSVEE
                     SREIIRTVLSQPETYALVLKETGQVIGSIGLMLGKQGGLDLPDSEAELGYWLGQGFWG
                     QCLVPEACQAILNYGFNQLDLEKIWCRSFAGNTKSLRVQEKLGFVYQYLLEDVYFSLI
                     DEIRTERVSLLTREGWQARKENL"
     gene            complement(6971..7669)
                     /locus_tag="U1335_000528"
     CDS             complement(6971..7669)
                     /locus_tag="U1335_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase"
                     /protein_id="HEM5231036.1"
                     /translation="MTKTALITGVSSGIGLAQAKIFLENGWRVFGIDLASKPDLAGDF
                     HFLQLDLTGDLSPVYSWCQTVDVLCNTAGILDDYRPHLDIEEDELARIFAVNFFAVTR
                     LTRPYLQQMVDRQSGIIINMCSIASSLAGGGGSAYTASKHALAGFTKQLALDYAKDKV
                     QVFGIAPGAVQTGMTQKDFEPGGLADWVADQTPIGRWTQPSEIAELTFMLATGKLASM
                     QGQIITIDGGWSLK"
     gene            complement(7662..7898)
                     /locus_tag="U1335_000529"
     CDS             complement(7662..7898)
                     /locus_tag="U1335_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018367459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2829 domain-containing protein"
                     /protein_id="HEM5231037.1"
                     /translation="MTFEEILPGLKAKKKYVRTGWGGAENYVQLFDTIEVHGKKLEAT
                     PYFLINVTGEGEGFSMWSPTPCDVLATDWVEVHD"
     gene            complement(7979..8728)
                     /locus_tag="U1335_000530"
     CDS             complement(7979..8728)
                     /locus_tag="U1335_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231038.1"
                     /translation="MRKLHAYLILASAFHEQEERATELFLSIYQDVLDAQADGQSAED
                     FLGKDSKQMADELLSDLPPIRWYYGLRLTGLISLVYISWFFLGLFGVTGEMVLEWRGL
                     LCDLLLALILPSSAFFILKNLVYERSKIKSYLLMGTWGLSFVGLIVLRFWISRQFYEG
                     LSLPLWASLLVILGIVAGLFYYRSKSAIVDTLIPAYVLTVLSGFSQLLASKFGYGPQD
                     WTGWLPLLFMVLAFFSTLAGTFFLLKKENVG"
     gene            complement(8805..9599)
                     /locus_tag="U1335_000531"
     CDS             complement(8805..9599)
                     /locus_tag="U1335_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231039.1"
                     /translation="MSKQMEYRKQIEVIESQLTKENKEYMGRINGYMMIASVFHRQEE
                     AVTAQLLSIYQDVLEAQKDGLSAEEFLGKDSKQMADDLLSYLPPIGFMEVANLSGLML
                     IIYLGSQWLMDFAGTGTISLNWLGLVCDTVLSLLLPAGIFLIIRGLIYQTSKIKVWAS
                     VLCIPLLFLLICGLRLWAIPEEPDLVLTGWGLAVPLTVLGLALLFFQKEKLVRYVFLP
                     TYLFLIVGGVVNMVMTVPVWFNLMLVILPAMAFWIGTAVLLVRKEK"
     gene            complement(9601..9918)
                     /locus_tag="U1335_000532"
     CDS             complement(9601..9918)
                     /locus_tag="U1335_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM5231040.1"
                     /translation="MKETQMLKGVLDGCVLQIISQKEIYGYELVQELRNQGFENMVGG
                     TVYPLLQKLEKNDLIFSQNKPSPDGPDRKYFYLTDQGKAYIEDFWSQWAELVQKVQRL
                     KGE"
     gene            complement(9915..10079)
                     /locus_tag="U1335_000533"
     CDS             complement(9915..10079)
                     /locus_tag="U1335_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231041.1"
                     /translation="MKLDKMRREDLELAGITLVTAVVTGWALDSILILGIMLASGLLF
                     GFFAEEEEDL"
     gene            complement(10267..12279)
                     /locus_tag="U1335_000534"
     CDS             complement(10267..12279)
                     /locus_tag="U1335_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEM5231042.1"
                     /translation="MFGLTVRLALTNLKKNRRLYFPYALMTILSTAIAYIFASLAFHP
                     DLGQVKGANGVIQVLGFGMIVVMLAVAIMVFYANSFVMKQRSKEFGVYSILGLEKKHL
                     FLMTFLENLVFSVGTILAGLLLGLALDKLFYALLLKAMQMPVVLASTFQLKSLVTVLI
                     YLFGIFALVSLFNIGKLGLTDSLKLVQGKKRGDKKSGLLWLQTLLALILLGAGYAIAQ
                     LVTSPLTAIPSFFGATLLVIFGTYLLFHAGVISLLNWLKNRQTYYYKPDNFISVSNLI
                     FRMRKNALGLATITILSSMFLVTMVGGLNIYIGGKDYIANQNPNDFSIDVGMQPSTSK
                     DQTEKWEEWADAILEEKDIPIESKVGYPYQQAYFSEVTNQQVRFLTNEEAAGMDFSDR
                     VGIGFVLDQASYEKMTGEKLQLASDQVAIYSKGVQYQAGQTLTFDEKEMEVAQVLPKN
                     VTLGHLPDHGSFLLSQYLVIVVQDLTIFENQAENRYYMGFESSLSEEEQVNSQEVFLF
                     GTFESELWESNILPNGTNAISLAYRAYAMRSFFSFAGSLFFIGLLLSLIFLMAVVLVI
                     YFKQISEGYEDRDRFVIMTKVGLDEDQTRQSIRKQLLTVFFLPILLAFVHLAFAYKML
                     SSILLSIGVVNAGLMLQVTAGICGGYLLLYLVVYAITTRSYKQIIS"
     gene            complement(12281..13039)
                     /locus_tag="U1335_000535"
     CDS             complement(12281..13039)
                     /locus_tag="U1335_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000173375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231043.1"
                     /translation="MSVLDVQHVQKIYSSLFKAGQVEALKDIHFTVEKGEYVAIMGES
                     GSGKSTLLNILATLDKPTQGKVLLNGLDTQSIKSKEAAAFRREKLGFVFQDFNLLDTL
                     SVKDNVLLPLVLSRYPIDEMNKRLIHTLNSLGIATLQDKMPYEISGGQQQRVAVARAI
                     ITQPEILLADEPTGALDSKSTATLLDIFEKINQEGQTILMVTHSTVAASRAKRVLFIK
                     DGILYNQIYRGERTSQEMYQLISDTLTLMANRGE"
     gene            complement(13135..14115)
                     /locus_tag="U1335_000536"
     CDS             complement(13135..14115)
                     /locus_tag="U1335_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM5231044.1"
                     /translation="MNKEMLPDFLTSWLRHRWLFLVSYCLFATTILAYSGLFDIERNL
                     VFYALTLLTICWLLALLWDFFREFSRFGKIWRGQKVTTGTASERLLQEKVERLEVQNK
                     LLIEKQRQEQTELDDYYTLWAHQMKTPIAASQLLVKEVDSSPVRHQLETELFKIEQYT
                     GLVLNYLRLQSFHDDLVIESVNLDELVRNLVRKYSLFFIQANTSLDLGQLDRLVKTDK
                     RWLGLLIEQILSNALKYCQGGSVSIVLDGDDLVIRDTGIGIAESDLERVFERGFSGFN
                     GRRTQQSSGLGLYLSRKIAAELGYSLKLKSKVGQGTEVRIGIKEVELIFD"
     gene            complement(14108..14791)
                     /locus_tag="U1335_000537"
     CDS             complement(14108..14791)
                     /locus_tag="U1335_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5231045.1"
                     /translation="MQKILVIEDDKTISQLVAKNLINWGYQVQEVQDFQMVLEQMEEF
                     QPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSSHDQPMDIVMAINMGADDYVTKP
                     FEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEVSLDLKTMQVSYKQDVEELTRNEFQIL
                     RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELRLPNLIMTKKGV
                     GYGLVWTHE"
     gene            14935..16128
                     /locus_tag="U1335_000538"
     CDS             14935..16128
                     /locus_tag="U1335_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HEM5231046.1"
                     /translation="MPNLLTYIEETQYDNFYDKPINKLDILALTELSYLPFDNLVSYS
                     FTENGVRLDRLAAAFEETYKNNFPPFSMVTKNRLALLGLLAKSKRFKSIKAFGFVDDY
                     QLEQEKQFSAISYRIDRKMIVTCFRGTDDTIIGWKEDFHMTYMDEIPAQRAASGYLEK
                     LMMQQGGHFYLAGHSKGGNLALYAACQQATDQQDRILAIYPFDSPGLHKKHLDAPGYK
                     NIQDRIHPIIPQNSIVGMMLETPENAQIVQSNTLGILQHISFSWEVDGSDFKLAPALT
                     SDSLQTDQALKTWTASLTDDELRDFFDLFFGIFIKAGIERFSDITVNPLQKLQEMDRL
                     RKEIAPEEAEMMDKLIRLLFDTRYQIWRDNISTSIPSPEISLPDWRKLFQLDNPEKTK
                     TSSGD"
     gene            complement(16130..17254)
                     /locus_tag="U1335_000539"
     CDS             complement(16130..17254)
                     /locus_tag="U1335_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase"
                     /protein_id="HEM5231047.1"
                     /translation="MKLPRFGVEEWLNVHENSAIYDIAGVSISSLTLEELFALSGTNP
                     EDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYIGVKPEQILQTNGATGANLLVLYSLIE
                     PGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEEHGWLPDLEKLRQLIRPNTKMICIN
                     NANNPTGAVMDRAYLEELVEIADEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNS
                     LSKTYSLPGIRVGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERN
                     RRILEENLAILDQWMEKEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLV
                     PGNRFERDGYVRLGYACEQETLIKGLEKLSQFLRRFDKEN"
     gene            complement(17402..18163)
                     /locus_tag="U1335_000540"
     CDS             complement(17402..18163)
                     /locus_tag="U1335_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEM5231048.1"
                     /translation="MSNQLENAKNLYLRGIRDGAIKEVHENYMGVSYTQHSTGVPDEK
                     EGFAAFFEDFFKRNPKREITIARAIEDGNFVFVHVHQKLNDGEAEWVTADIFRSDENG
                     RIVEHWDVIDAYPKNIGETDPIYADFELTDLDKTEDNKKIVRRFLVDVLQNGEIEKFD
                     DYVAADLIQHNQEIAQGGAAYKDYLVDNQVNYDFVFKVMGQGDYVVAYSKVWIVGQDY
                     AHFDIYRLKDGKIVEHWDNKEVMPEKKDLTNLGKF"
     gene            complement(18173..19687)
                     /locus_tag="U1335_000541"
     CDS             complement(18173..19687)
                     /locus_tag="U1335_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019319700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease/substrate-binding
                     protein"
                     /protein_id="HEM5231049.1"
                     /translation="MDQLVTTFLERKADWLTALFEHLRISLLALIIAIAIAVPLGLVL
                     SNKKKLTEWSLQITGIFQTIPSLALLGLFIPFMGIGTLPAVVALVIYAIFPILQGTLT
                     GLGEIDPSLEEAATAFGMNKWEKLKKFKLALAMPILMSGIRTASIMIIGTATLAALVG
                     AGGLGSFILLGIDRNDSALILIGAVSSAVLAVLFGSVIKFLQDKKPRTILAALLVTLL
                     AVGASYVPLNQKSSKKLVIAGKLGAEPEILINMYKLLIEDQTDIEVELEPNFGKTSFL
                     YEALKSGSIDLYPEYTGTITTTLLSNPPSDLSNNPEEVYTYAKEAILEQDGLMYLAPM
                     AFQNTYALAVTEDYAQDYGLEKISDLAKVQQTAVAGFSLEFNDREDGNVGLTNLYGLN
                     LNVKTMEPALRYEAIKNGDVQLVDAYSTDSKIVSYKLKILEDDKELFPPYQAAPLLTK
                     DTLENYPELEQVLGVLAGKISTEEMTQMNYAVDVEGKSAEQVAREYLEQEGLLK"
     gene            complement(19687..20418)
                     /locus_tag="U1335_000542"
     CDS             complement(19687..20418)
                     /locus_tag="U1335_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231050.1"
                     /translation="MIEYQNVSLTYQVNGPILKNLTFDVQEGEFFVLIGPSGSGKTTT
                     LKLINRLIEQTDGDIRIQGKRLKDFDLRELRLETGYVLQQIALFPNMTVAENIALIPE
                     MKGLNKTEILAKTRELLTKVGLEPDSYLDRLPKDLSGGEKQRIGILRAIIANPKVLLM
                     DEPFSALDPISKGQLQDLIKDLHEEFKMTTVFVTHDMDEAVKLADRICLMKAGEVVQL
                     GTPDELHNQPANDFVVEFMKNRGGA"
     gene            complement(20411..20860)
                     /locus_tag="U1335_000543"
     CDS             complement(20411..20860)
                     /locus_tag="U1335_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM5231051.1"
                     /translation="MTELRQRSKILARIFYNQDGLYEDYARRHGLNSKSLSILMFIYY
                     ISRGVTQNWISKKTYSSKQVVNATIKKFLDKGYVFFEENPADKRHKKVKLTEEGRVYA
                     SRILDPLEEAEKTALSQFSLEEQEQLLDLFGRYGQALTEIIGGETND"
BASE COUNT         6008 a         5082 c         4180 g         5756 t
ORIGIN      
        1 gagcataatt ttcaacaaga caagaaagga ttttcaatga aaaaaatact agctcttgct
       61 ctagcttcga gcatcttgct aactgcctgc acaaacaact cgacagctaa tagctcatct
      121 tctacagcat ctagctctag ttcaagctcg actacgacag ctgatacaac tgcttctagc
      181 caatatgcca aagatttggc atacgccatt aacaatccca aagctacatt cccccaactt
      241 tccaatgaaa ttggtgaaaa tgaggctgct gttaaaataa aaacaaccga aggcgacatc
      301 actataaaac tcttccccga gcaagcacca ctaactgtgg aaaactttct gactcatgcg
      361 aaggaaggat actataatgg aacgatcttc catcgtgtca ttaaggattt catgattcaa
      421 ggtggcgatc ctcttggaaa tggtactggt ggagagtcta tctgggccgg aaaagatact
      481 actatcgatg ctgggaatgg ttttaaagac gagatttcag ctttccttta taacattcgt
      541 ggctcacttt ctatggcaaa cgctggcgcg ggaacaaatg gaagtcagtt tttcatcaat
      601 caaaatacaa cagacatgtc tagccaactc tccagttcta gctatcctgg taaaatcatt
      661 gacgcttata aaaacggagg caatccaaac ttagatggca agcataccgt atttggtcaa
      721 gtcattgaag ggatggacat cgtggataaa atcgcttcag tcgaaacaga cactagcgat
      781 aaacctaaaa cagatgttaa gattgagtca attgagatca ttaaagacta cactaactag
      841 gtcagaccaa taaaaaatga aaacttgaga atttcctcaa gttttcattt tttattacaa
      901 ttgctttcct tgttttccat tatataaacc cttgaatact tgatagagga ttggtacagc
      961 aatgatggtc gtaattgcag tgccataggt tcctaagatt ctacccaaag ctgcgaggaa
     1021 ggaagctgag aaggttaacc ctccgacaaa acttcccgtt aatgtatact tcaataggtt
     1081 caagataatt tttgtaattg ccgcaacaat tccaaccaaa ataatattgg ttaagcgatc
     1141 attttccttg aggaatttct cgtaaaacaa atgcaaaatg aagcagacga tgagcgattc
     1201 taaaatggta atccaagcga ctgaagcata accagatagt aaatcaaaga tgcctagacc
     1261 aagtgacgcc gccgcagctc cttttttggc accaaagatt agtactccta ccaccaccag
     1321 agcattgcct aaatggacaa attgactccc aaaaggaata cgaataaaga agacaaccac
     1381 acaaataagg gctgcaaata ggctaatttc tgttaattga cgcaattgat tctgtttcat
     1441 aatttctcct ttaatgtttg aaatgcctgc tgtaattctg ctaaaaatgg ttcgaagtaa
     1501 atcccaaatt tcaagtctcg atttaatgaa agagtttgtt gtaagctctt gtcgataaaa
     1561 tctaaagcta gagggatagc ttgatggaga ttgatttgtt ggatggttgc tacagccaac
     1621 aaggtagata gaatgtcacc tgttccaaag aaatttgctg gatatttttt agacatatag
     1681 gtagttattt cccctgtttc ctgctgaaaa taggctacac ctatttggct atcatcaaag
     1741 gaaatccctg tcagtacaat atctgctgtc acttgctttg ccaaggcctc caataagtct
     1801 tcaatcactg aaaaatcata gtattctcca acatattccc gaccggttaa taaagcagcc
     1861 tcagtcaaat tcggaagaat gagcttggcc gactggatca actctttcat ggcttctaca
     1921 taggtagggg tgaaacctgt atacaacttg cctccatccc ccatgaccgg atcaacaatc
     1981 aatggtgtct ctgtttgttt agcatacata gccaattgac ttagttgctg aggatttcta
     2041 cagtagccag acaagatgcc tgccaactcc aaattcaagt tcttccactg ttcaaaatag
     2101 gcttgattca agtcagtcat atcttcaacg acaacatctg gaaaaccacc cgtatgagaa
     2161 gaaagaagta ccgttggtaa aagaatcgtt tctacctgac aggctgctgc aattgggatg
     2221 ctagtggcta gggcaacctt acccacacca ggcaaatcat ttgcaagcaa taatcgctga
     2281 accataacaa cctcctaaat tatttttctt aaacaaaatt gtaaagtatt ttcacgagct
     2341 tttcaataac tcttatcaga aattgtatgg ggacagatgg ctgaaacctt ataatatagg
     2401 gctcaaatta ctgcataaga aaaacagtaa caacttcttg ctactgtcat cctatttcaa
     2461 tgtattgttg tcaaaatctg cttaattttt ctccagaaag gcaatcaggg tctgggcaga
     2521 acgttctcct gcttgaatga taaattcatc aaaggtgata ttggcatctc cctgagctgt
     2581 gtcactcatg gcacggataa ccaagaatgg cttacctgta ttaacagctg cttgagcgat
     2641 agctgcccct tccatctcta cggcaaggac ttctggaaaa tgttccttga tgctggcaat
     2701 cctatcttga cctgcgataa aactgtcacc tgtcacaatc agacccacat gactaatcat
     2761 ttcctgctct gctaaaacgg ttcttagctg ttctaacaag acttggtcgg ctggataata
     2821 caattcctgc cctgccattt gcccgtaagc atagccgaaa gccgtcacat ccacatcgtg
     2881 gtaagccaat tgatttgcta caaccacatc accgatggca ataccttcgg caacagctcc
     2941 tgccgaacct gtattgacaa tgacatcaac cgaaaaacga tctgccaaaa cagccacgga
     3001 catagctgac ataaccttac cgatacctga ctgaacaaga acaacttcat gttgaccgat
     3061 tcgtccctga tagtaagttc gacccaagac atcgatttca gttgcatctt gtagatgctc
     3121 gaccaaaatc tttaattcct gaggcatggc tgcgataatt ccaaatttca tctcttctcc
     3181 taaataaata acactgcaat gataaagata atcagcaaga tgatgaccca aaaaaggatt
     3241 ttgtttacct tactgcggaa agcttctcgc ttgatggttt cgatacggcg actttttact
     3301 acagtaggtt tgaccgggat tcggagcgtt tgtccctctt catatccctg ataatcttct
     3361 tctagatatg gatcgaatag agcatcatcc attgatatat cctggtttgg acgatagtgt
     3421 ccaaactggc tagattggtc ggaatactgt ttctttttcg ctttctctaa aatttcatcc
     3481 gtcaacaagg gcttgcccat tgctagtttc ctactttctc atgagttgta aatattggat
     3541 agccatgatg gtctttgcat cacaaatatc gccagtagcc accaagttca aagcctcttc
     3601 caaggttacc tcatgtaatt cgataacctc atcttcatcc attggacgag gattttcaac
     3661 cttgataagg ttatctgcta aataaaggcg aattcgttca ttacagaaac cgatggctga
     3721 atagaaatct gccaacaagg tcagtttgtc actagtatag cctgtttctt cttctaattc
     3781 acgcaacgca gcatcttcaa gcgtatcttc ttcgcctagc tccaatttcc ccgccggaat
     3841 ttcataaata gtacgttcaa tggccttgcg gtattgtttg accaaaatca ttttaccttc
     3901 tggggtaacg gctaaaacgc aaactgctcc cttgtggaaa atgagttcgc gcttaccagt
     3961 tccaccattt ggcaaggcaa catcatctac tactacatca aaaatgtgcc ctttaaaaat
     4021 ttctgtccgc tcaatggttt tttcttcaaa attcatacga ttacctattt ttgacttgga
     4081 tggaacggaa aacgagtcgc ataaccttct ttattttctt gacgaccacg accaataccg
     4141 atggcatcct ctggaatatc ttttgtaatg acagaacctg cagccaacaa ggcgttgtcc
     4201 ccgatagtta ctggtgcgat aatggttgag ttagagccaa caaaggcatt atctccaacg
     4261 gttgttttaa atttattttt accgtcgtag ttgacagtga tggtaccagc accaacgtta
     4321 acattattgc caatcgttgc atttcctaga taggtcaaat gaccagactt cgttccttga
     4381 ccaagtgtag aggccttgat ttccacaaag tttccaacgt gaacatcttt tttcaagaga
     4441 ctgcctggac gaatatgggc gtatggtcct accgtcacac cttcttcaat aacagattct
     4501 tcaatgtctg agttgctgat gactgcatct gctgcaattt tcgcatcacg tacacgagta
     4561 ccattggtta aaacagtacg ttcaccaatc accgtttgcc ctttcaagac aacgttggct
     4621 tcaatgaccg cttctgctcc gatttccaca tcaatgtcga tataagttgc ttctggattg
     4681 acaaaggtta cgccgttaat catgtgtttt tcattgattc gtttgcgcat aacagcttct
     4741 gcagtcgcaa gagcgacgcg atcattgaca cccaaacttt catcaaaatc acgcaagaca
     4801 taagcaccaa ccttctcgcc tgcctgacgg aaaatcgaaa taacatctgt cagatagtac
     4861 tcaccttggg cattgtccgt attaatatct ttaagcgctt caaaaagacg tttattatca
     4921 aacaagtagg ttcctgtatt gatttctttc acttgttttt caaaatcgtt ggcatctttt
     4981 tgctcaacaa ttttttgcac ttccccatca gcattgcgaa taatccgacc atatccgaat
     5041 gggttatcag tctgagctgt caagatagtc gcaacattct tgtggctgac atgaaagtta
     5101 atgaggttct tcaagctttc tcctgtaata agcggtgtat ctcctgcgat aacaagggtc
     5161 tgaccttcca aacctgcaag agctggctca gccatcataa cggcgtggcc agtccccaac
     5221 tgttcagatt gaagggcaaa ctctgactga ccttcgagaa ctgcttggac caattctgcc
     5281 ttgtgaccga caatcgttac tgttttagca ggttccatag catctacagc ccgtttgaca
     5341 tgctccaaca tggtaattcc tgccactttg tgtaggactt ttggcaagtc agacttcatg
     5401 cgagttccct tacccgccgc taggataatt gcatagttat tgctcatagt tttctctctt
     5461 ttcaatgata taccctatta tagcaaattt tgatgttttt ggaaaatagc agaagtgtgc
     5521 caagttttaa gtcaagcaaa aaggagcctg agctccttag aatattaaat gaagacctcg
     5581 tttaccatct tctcttgctt gctccgtcag agctttaaac tcttcccaaa cagggcgttc
     5641 ttggtctgta aaacggagat tactgcctgg caagctggca ttggataccg cttgaacaaa
     5701 gcctgacaaa atggttgcca aagccacacc gtccttactg accacatctt ccttggcaac
     5761 aagcaaggcc gactgcaact tccctgtctt ctctttgcca atctcctcct ctttcccagc
     5821 cagaatggga gaaagctggt ccaataactc aatgacacgt tttttatcca ttgtaaactc
     5881 cttggtttta ttttcatatt attatactat aaaccaaagg tgctaacaag ggaaaactta
     5941 cattttaggg taaactaatt caaattcttc acagacaacc agcatgtctt ttgagaagga
     6001 caggcctgct tctgccagcc agatagtgaa aagctcttca tggacctgcc gccagtgaat
     6061 cagacttttc gcttttatgt cagacaagtc acctccctga cggaactcgc cctccttata
     6121 ggcatgttct tccgtcactt gggaaaaggg catcacatag accttggtgg tctggataat
     6181 gcacacagcc tgaccttgtc cgtccagaat gatgtcatag ccaccagctt tggggatttc
     6241 ttctccctct actgcgtaga gggcatgggc agagctggtc gaggatttga tgcctctagc
     6301 caccaaatca gccagtcgat cagcttccgc cccaaaggcc caagcctcag gctcaggacc
     6361 tgcttgggga ttgatggtaa gaaattcttg ccataattct gttggggtca taggttttcc
     6421 tttctagcct gccatccctc tcttgtcagc aggctcacgc gttcggtacg gatctcatca
     6481 atgagtgaga aatagacatc ttccaatagg tattggtaaa caaaacccag cttttcttgg
     6541 acacgaagag acttggtatt gcctgcaaaa gaacgacacc agattttttc taaatccaac
     6601 tggttaaagc cgtagttcag tatagcttga caagcttctg gcaccagaca ctgtccccaa
     6661 aatccctgtc caagccagta gcctagctct gcttctgagt caggcaaatc aagaccacct
     6721 tgtttaccaa gcatgagccc gatactgcca atcacctgtc ctgtttcttt gagaacaagg
     6781 gcgtaggttt ctggttggct aaggactgtc ctgataattt ctcgactttc ttccacgctc
     6841 tgatgaacag gccaacccgc tgcaggacca acttctggat gactggcctg tgaaaataag
     6901 tcagctgcgt ctgtttcact ccaagggcgg agcaagagac gattggtttc aagaatcata
     6961 atattccttt ctacttcaaa ctccagccac cgtcaatggt gataatctgg ccttgcatgg
     7021 aagcgagttt accagtagcc agcatgaagg tcagctctgc tatttcgctg ggctgggtcc
     7081 agcgtccgat aggggtctgg tctgccaccc agtccgccag gccaccaggc tcaaagtcct
     7141 tctgggtcat gcctgtctgg acggcacctg gggcaatgcc gaagacctgg accttgtcct
     7201 tggcatagtc cagtgccagc tgcttggtaa aacctgccaa agcatgcttg gaggcggtgt
     7261 aggctgagcc ccctcctcct gctagactgg aggcaatgga gcacatattg ataatgatgc
     7321 ccgactgtct gtccaccatt tgctgcagat agggacgggt cagtctagtc accgcaaaaa
     7381 aattgaccgc aaagatgcga gctaattcat cctcctcaat atccagatgg ggacggtagt
     7441 cgtctagaat gcctgcggtg ttacaaagga catcgactgt ctggcaccat gaatagactg
     7501 ggcttaaatc gcctgtcagg tcaagctgta gaaagtggaa atcgcctgcc aaatcaggct
     7561 tgctagccaa atcaatcccg aagacacgcc agccattttc caaaaaaatc ttcgcttgtg
     7621 ctagaccaat gccgctggaa acgccggtga tgagggctgt cttagtcatg gacttctacc
     7681 cagtcggtcg caaggacgtc gcagggggtc gggctccaca tggagaatcc ctcaccctcg
     7741 ccggtcacgt taatgaggaa atagggcgtc gcctccagct ttttcccgtg aacttcgatg
     7801 gtgtcaaaga gctggacgta gttctctgcc ccgccccagc ctgtgcgaac gtactttttc
     7861 ttggccttga ggccgggtaa aatttcttcg aatgtcattt gaaactcctt tattcttcta
     7921 tctttcaatc attataccaa aaaatcagac cactctaaag agttgtctga tcgtatttct
     7981 accccacatt ctcctttttc aataggaaaa atgtgcctgc aagcgttgag aaaaaggcaa
     8041 gaaccataaa gagcagaggc aaccaacctg tccagtcctg cggtccgtag ccaaacttac
     8101 tagccagcag ctgactaaag ccgctgagaa ccgttagcac ataggctgga atcaaggtat
     8161 ctacaattgc tgacttactg cgatagtaga agagaccagc tacgattcct agaatcacca
     8221 aaagactggc ccacaagggc agggaaagac cctcataaaa ctgacgacta atccaaaaac
     8281 gcaagacaat cagccctaca aagctaagcc cccacgtccc catcagcaga taggacttga
     8341 tttttgaccg ctcatagact aggttcttta ggatgaaaaa tgcagagctg ggcagaataa
     8401 gggcaaggag caaatcacac agcaagcctc gccattcaag aaccatttca ccagtcactc
     8461 caaacaaacc taagaaaaac cagctaatat agaccaagga aatcaatcct gttaaccgca
     8521 aaccatagta ccagcgaatg ggcggtaggt cagacaagag ttcatccgcc atctgcttac
     8581 tgtctttgcc taaaaaatcc tctgccgatt gaccgtctgc ttgggcatcc aagacatctt
     8641 gatagataga tagaaagagt tccgtcgctc tttcctcctg ctcatggaag gctgatgcca
     8701 gtatcaagta agcatggagt ttacgcatat aagccttgtt ttccttggtc aattttccct
     8761 gtaagctgct aatagtgttc aaatgttcct gttgcttgtt catcttactt ctcctttctc
     8821 accaacaaaa ccgcagttcc aatccaaaag gccatagctg gaagaatcac caacatcaga
     8881 ttgaaccaaa cgggaacggt catgaccata tttaccacac cgccaacaat cagaaagaga
     8941 taggtcggta aaaagacata gcggaccaac ttttcctttt ggaaaaatag cagagctaaa
     9001 ccgagaacgg taagtggcac tgcaagcccc cagccagtca agactaggtc aggttcctcg
     9061 gggattgccc agagacgaag tccgcaaatt aggagaaaaa gaagggggat gcaaagaacg
     9121 cttgcccaaa ccttgatttt gctggtctgg taaatcagac cgcgaatgat gaggaaaatc
     9181 cctgctggca ggaggaggct aagtaccgtg tcacacacca agcccagcca gttaagggaa
     9241 atggtgcctg tccctgcaaa atccatcagc cattggctgc ccaggtagat gatcagcatg
     9301 aggccactca ggtttgcgac ttccatgaaa ccaatcggag ggaggtagct gagtaggtcg
     9361 tctgccattt gcttgctgtc cttgcccaga aactcttctg ccgaaagccc gtctttttgg
     9421 gcttcaagta cgtcttggta gatgcttaag agctgagcag tcactgcttc ttcctgcctg
     9481 tgaaagacag acgcaatcat catataacca ttgatacggc ccatgtattc cttgttttcc
     9541 ttggtcaact ggctttcaat cacttcaatc tgcttgcggt attccatttg tttgctcatc
     9601 ttattctcct ttcaatcgct gaaccttttg gaccagctca gcccactgag accaaaaatc
     9661 ttctatataa gcctttccct ggtctgtcag ataaaaatac ttcctatcag gtccgtctgg
     9721 cgagggctta ttctgactaa aaatcaggtc atttttttct agcttctgaa ggaggggata
     9781 gactgtccct ccaaccatgt tttcaaagcc ctgatttctc aattcctgaa ccagctcata
     9841 accataaatc tccttctggc tgatgatttg caatacacag ccatccagga cccccttgag
     9901 catctgggtt tctttcataa gtcctcctct tcctctgcaa aaaatccaaa cagcaagcct
     9961 gatgctaaca tgatgcctaa gatcaaaata gaatccaagg cccagcctgt tacaacggcc
    10021 gtcacaagcg tgatgcctgc tagttccaaa tcttctcgtc tcatcttgtc caatttcatg
    10081 ttattctcct atctagtttg taatgcacac tagtcagata aaaataaaag cgattttctc
    10141 tatcttccat cactagtttg ttttacctat tagtcttgta tctatagtgt aacacaaggc
    10201 agctagtatg taaagcaaaa tagtgaaaaa tatacaaaaa aattaaaaac ttgggtcacc
    10261 ccaagtttag gaaataatct gtttgtaaga tcgtgtcgtg atagcataaa ccactaggta
    10321 aaggaggaga tagccaccac agatgcctgc agtcacctgc aacataagcc ctgcattgac
    10381 cacaccgata gacaacaaga tagacgagag catcttgtag gcaaatgcaa gatggacaaa
    10441 ggcaagtagg ataggtagga aaaagacggt cagcaattgc ttgcgaatgg actgtctcgt
    10501 ctgatcctca tccagaccaa ccttggtcat aatgacgaag cgatctctgt cttcatagcc
    10561 ttctgaaatc tgtttgaaat aaatcaccag caccaccgcc atcaaaaaga tgagtgatag
    10621 caaaagaccg atgaagaaaa gtgaacctgc aaaactgaag aaactacgca tcgcataggc
    10681 acgataggcg agactgatgg cgttcgttcc attcggtaat atattggact cccaaagctc
    10741 actttcaaag gtaccgaata agaagacctc ctggctattt acctgttctt cttctgatag
    10801 actactttca aagcccatat aatagcgatt ttcggcttga ttttcaaata ttgtcaaatc
    10861 ttgaacaaca atgaccagat actggctgag aaggaaggaa ccatggtctg gtagatgtcc
    10921 taaagtcaca ttcttgggca agacttgggc aacttccatc tccttttcat caaaggtgag
    10981 ggtttgacca gcttgatact ggactccctt actataaatt gccacttggt cagatgccaa
    11041 ctggagtttt tctcccgtca tcttttcata gctggcttga tcaaggacaa aaccgatccc
    11101 aactcggtca gagaaatcca taccagcggc ttcttcattc gtcaaaaatc ttacttgctg
    11161 gtttgtcacc tcagaaaaat aggcttgctg gtaaggatag cccaccttac tttcaatagg
    11221 aatatccttc tcttctaaga tagcatccgc ccactcctcc cacttctccg tttgatcttt
    11281 tgaagtgctt ggttgcattc caacatcaat cgaaaagtca tttggatttt gattggcaat
    11341 ataatccttg ccaccgatgt aaatattgag ccctccaacc atggtcacca agaacatgct
    11401 agagaggatg gtaatggtcg caagacccag agcatttttc cgcatacgga aaatcaagtt
    11461 agacacagaa ataaaattat ctggcttata ataataggtc tgacggttct ttaaccagtt
    11521 taagagactg atgacacctg cgtggaagag caggtaggtc ccaaagataa ccagaagagt
    11581 tgctccaaag aaacttggaa tagctgtcag cggactggtc actagttggg caatggcgta
    11641 gcctgccccc aataagataa gagctaagag ggtctgtagc cagagtaagc ctgatttctt
    11701 atccccacgc ttcttacctt gaaccagttt gagtgagtcg gtcaagccta gtttcccaat
    11761 attaaagagg ctaaccaagg cgaaaatccc aaagagatag ataagtacag taactagact
    11821 tttcaactgg aaggttgaag ccaagaccac aggcatctgc atggccttga gcaagagcgc
    11881 atagaagagt ttatctagag ccagtcccaa gagcaagcca gctagaatgg taccgactga
    11941 aaagaccaga ttttctagaa aagtcatcaa gaagagatgt tttttctcca gaccaagaat
    12001 gctatagaca ccaaactctt ttgaccgctg cttcataaca aaactattgg catagaagac
    12061 catgatggca acggccagca tgaccacaat cataccgaag ccaagcactt gaatcacccc
    12121 attggccccc ttgacctgac ctaaatcagg atgaaaggca agcgaggcaa atatataggc
    12181 aatggctgta gacaaaatag tcatcagggc atagggaaaa tagagtctgc ggttcttttt
    12241 gagattggtc agagccaatc gaacggttag tccaaacata ctactcacct cgattcgcca
    12301 taagtgtcaa ggtatctgaa atcaactgat acatttcctg actggttctc tcacctcggt
    12361 agatttgatt ataaaggatg ccatccttga tgaagagaac ccgtttggca cgactagctg
    12421 ctactgtcga gtgggttacc atcagaatcg tttgcccttc ttggttgatt ttttcaaaaa
    12481 tatcgagaag ggttgccgtt gatttggagt cgagggctcc agtcggttca tccgctaaga
    12541 ggatttctgg ctgggtgatg atggcacgcg ccaccgcaac ccgttgctgc tgaccacccg
    12601 aaatctcgta gggcatcttg tcttgcaagg tcgcaattcc taggctatta agcgtatgaa
    12661 tgagtcgctt gttcatctca tcaatcggat agcgagacaa aaccagaggc aaaagcacat
    12721 tatccttgac agagagggtg tccaagagat taaaatcctg gaagacaaag cccaatttct
    12781 cccgacgaaa ggctgccgct tccttgctct tgatagattg ggtatccaat ccgttaagca
    12841 agaccttgcc ctgcgttggc ttatcaaggg ttgccaaaat gttgagcaag gtggattttc
    12901 cagaaccaga ctcacccata atggcgacat attcaccctt ttccactgta aaatgaatat
    12961 ccttcaaagc ctcaacctgt cccgccttaa agagagaact gtatatcttt tgaacgtgtt
    13021 gaacatctaa aactgacata acttgactcc ttttcttttt ctaccttcat tctacacggt
    13081 cccaagataa actaccatag ccttagcttt catttacgtg acagttttgt aagattaatc
    13141 aaaaatcaac tccacttctt tgataccgat acgcacttct gttccctgac ccacttttga
    13201 ttttagcttt agggaatagc ccagctccgc agcaattttc cgtgagagat agagccccag
    13261 ccccgaagat tgctgggttc tgcggccatt gaaacctgag aaaccacgct caaagacccg
    13321 ttccaagtca ctctcagcaa tcccaattcc cgtatcgcga atgaccaaat catccccgtc
    13381 caaaacaatc gaaacgcttc ccccctgaca atacttgagg gcattggata aaatttgctc
    13441 tatcaagaga cccagccaac gcttgtctgt cttaacgagc ctatccaact gccccaagtc
    13501 taagctggta ttggcctgaa tgaaaaagag ggaatacttt cttactagat ttctgaccag
    13561 ttcatccaaa ttgactgatt cgataaccaa atcatcatgg aaggactgta aacggagata
    13621 gttcaagacc aagcctgtgt attgttcgat tttaaagagt tctgtttcta gctgatgacg
    13681 gactggacta ctatctactt ccttgaccaa gagctgactg gctgcaatcg gcgttttcat
    13741 ctggtgggcc cagagggtgt agtagtcgtc taattctgtc tgttcctgtc gctgtttttc
    13801 aatcaagagc ttgttctgga cttctagtcg ctccactttt tcctgcaaca aacgctcact
    13861 ggctgtccca gtagtcactt tctgaccacg ccagattttt ccaaagcggg aaaattccct
    13921 gaaaaaatcc cagaggaggg caagaagcca gcagatagtg agcagggtga gggcgtagaa
    13981 aaccagattc ctttcgatgt caaagagccc actataagcc agaatggtcg tggcaaaaag
    14041 acagtagctg accagaaata gccaacgatg acggagccaa gaagttagaa aatcaggcaa
    14101 catttcctta ttcatgtgtc cacaccaggc cgtagcctac tcctttcttg gtcataatca
    14161 agttaggcaa gcgcaactct gccaactttt tacgcaggcg agcaatgttt accgacaggg
    14221 tattgtcatc cacaaaaata tcactgttcc agagttctct catcagctcc tcacggctga
    14281 cgacttcctt gccatgttca aaaagcaccc gtaaaatctg aaattcattt cgggtcaatt
    14341 cctctacatc ctgtttatag gacacctgca tggtcttcaa gtccaaggaa acttcttcaa
    14401 accagagcaa actttgttcg ccgacaaagt cataggttct tctgagaagc ccctgtattt
    14461 tggccaggag aaccgtcatt tcaaagggct tggtcacata gtcatccgcc cccatattga
    14521 tcgccatgac aatatccatt ggctggtcat gggaagatag aaacataatg ggcacacggg
    14581 atgtcttgcg aatttcctga caccagtaat agccattgaa aaaaggcagg ccgatatcca
    14641 gtaaaatcaa atggggctga aactcttcca tctgttccaa aaccatctga aaatcttgga
    14701 cctcttgtac ctggtaaccc cagtttatca agtttttagc aactagttgg ctaatcgttt
    14761 tatcatcctc gataactaaa atcttttgca tcgctctctc cctttttcat atatactata
    14821 tattatagcc tataaatcac aaaatggtcc gatttttcta acaaacaatc tcaaactaag
    14881 atttgtcaga ccaagcatat ttcgttatac tagataaaaa aggaaaggac tgctatgccg
    14941 aatttattga cctatattga agaaactcaa tacgataatt tttatgataa acctatcaat
    15001 aagctagata ttctggccct gaccgagctt tcctacctcc cttttgataa tctggtttcc
    15061 tactctttta cagaaaatgg tgtacgactt gatcggttgg cagcggcctt tgaagagacc
    15121 tacaaaaata atttccctcc cttttctatg gtgaccaaaa accgcctagc cttactagga
    15181 cttctagcca aatccaaacg cttcaaatct atcaaggcat ttggcttcgt tgacgattat
    15241 cagttggaac aggaaaagca gttttcagca attagttatc gcattgaccg aaaaatgatt
    15301 gtgacttgct tcagaggaac agacgatact attatcggtt ggaaggaaga tttccacatg
    15361 acctatatgg atgaaattcc tgcccaacgt gcagcaagtg gctacttaga aaaacttatg
    15421 atgcagcagg ggggccattt ttatctggcc ggtcattcga aaggcggaaa tttagccctc
    15481 tatgcagcat gccagcaagc tacagaccaa caggatagaa tcctagctat ctatcccttt
    15541 gattcacctg gacttcataa aaaacattta gatgcccctg gctacaaaaa catccaagac
    15601 cgtatccacc ctatcattcc tcaaaattct attgtaggaa tgatgttgga aacaccagaa
    15661 aatgctcaga ttgttcagag caataccctc ggcattctac aacatatcag tttttcttgg
    15721 gaggttgacg gaagcgactt caaactagcc cctgccctga ctagcgatag cctacaaaca
    15781 gaccaagcct taaaaacttg gacggctagt ctaacagacg atgaattacg agacttcttc
    15841 gatttgtttt tcggcatctt catcaaagca ggaattgaac gttttagcga cataactgtc
    15901 aatccgctcc aaaaattaca ggaaatggac cgactgagaa aagaaatagc tccagaagaa
    15961 gctgagatga tggacaaact cattcggcta ctctttgata cccgttatca aatctggagg
    16021 gacaatatta gcacttccat tccaagccct gaaatctctc taccagattg gcggaaactc
    16081 tttcaattgg acaatccaga aaaaacgaaa actagctcag gtgactgaac tagttttctt
    16141 tatcaaatct tcttaaaaat tgagataatt tttctaatcc tttgattaga gtttcttgtt
    16201 cacaggcata gcccaggcgg acatagccgt cacgttcaaa ccgattacca ggaactagga
    16261 gaacaccgtg ttcttgcaag agttgcaagc aaaaatcttc cataggcata tccactgcaa
    16321 tcttgacaaa gctggtagaa acaaccgctg gacggatata ggaaactaag ggttccttct
    16381 ccatccactg gtccaaaata gctaaatttt cttctaaaat gcgccgattt cgttctagaa
    16441 tttcttgata atgggccaaa gctaattgag ccaccagatc gtcaaagaca cctgcacaaa
    16501 tcatagtgta atcccgataa tctctcagaa tgtccgtcac ttgatgattg gctgccaccc
    16561 aacccacgcg aatacctggc agagaatagg tcttggataa gctatttaca gcaattcctt
    16621 tatcatagac ttctataata gatggcacat ccagctcaga aaaggaacga tagacttcat
    16681 ccgataagat ataggctcct acctcatcag caatttccac caattcttcc aaataagccc
    16741 tatccataac tgcaccagtt ggattattgg cattgttgat acaaatcatc ttggtattgg
    16801 gacgaatgag ctgacgcaat ttctccaagt ctggcaacca gccatgctct tcctcaatct
    16861 gccacaaatc cacttctgct cccaaagact ttggaatatc gtagagttgt tggtaggtcg
    16921 gataaaggga aatgacatgg tctcctggct caatcaaact ataaagaact aacaagtttg
    16981 cccctgttgc cccgttggtc tggagaattt gttctggctt gacgcctata tagagttgac
    17041 taactgattt tttaaatgct ggcgaacctt ctatccagcc atagttgagc ttggtaccct
    17101 gtaatttctt ataaaaatcc tcaggattgg tgcccgacaa ggcaaatagt tcctccaaag
    17161 tcaatgaaga aatggacacc cctgctatat cataaatcgc gctgttttca tggacattca
    17221 gccattcctc aacgccaaaa cgtggtaatt tcatcagtct tcctacttca atttattctg
    17281 tcactattgt accacattct cacaataatt gtataaatat gcgatatatc ataaatggaa
    17341 tatttttaca attgaaaaag cagactttct caaacgagac tgtctgctct gcttttttct
    17401 cttaaaactt ccctagattg gtcaagtctt ttttctctgg cataacttcc ttgttgtccc
    17461 agtgctcaac aatcttacca tctttgaggc ggtagatgtc aaagtgggcg tagtcctgac
    17521 ctacaatcca gactttcgag taagccacca cgtagtcacc ctgtcccatc accttgaaga
    17581 caaagtcgta gttgacttga ttgtcgacaa gatagtcctt ataggccgca ccgccttggg
    17641 caatctcttg gttgtgctga atcaggtcag ctgccacata gtcgtcaaac ttctcgattt
    17701 ccccattttg aaggacatcg accaagaaac gacggacgat tttcttgttg tcctcagtct
    17761 tatctaggtc agtcagctca aagtctgcgt aaatcgggtc tgtttcacca atgttttttg
    17821 gataggcatc aataacatcc caatgctcaa cgatacgacc attttcatcc gaacggaaga
    17881 tgtccgccgt cacccactca gcctcaccgt cattgagttt ctggtggaca tggacgaaga
    17941 caaagtttcc gtcttcaatg gcacgggcaa tggtgatttc ccgcttggga ttgcgcttga
    18001 aaaagtcctc aaagaaagcc gcaaagccct ctttctcatc aggcacaccc gtactgtgct
    18061 gggtgtagct gactcccata tagttttcat gaacttcctt gattgcccca tcgcgaatgc
    18121 cacgaaggta aagattttta gcattttcta gttgatttga catgattttc tcctatttta
    18181 acaatccttc ttgttctaaa tattccctcg ccacttgctc tgccgacttg ccttccacat
    18241 cgaccgcata gttcatctgg gtcatttcct cggtcgatat tttgcctgcc aagaccccta
    18301 ggacttgctc caactcagga tagttctcta aggtgtcttt ggtcaatagc ggagcggcct
    18361 gataaggtgg gaagagctct ttgtcgtctt ccaggatttt cagcttgtaa gaaacaatct
    18421 tgctatccgt tgagtaggca tcaactagct gcacatctcc atttttaata gcttcgtagc
    18481 gaagggcagg ctccatggtt ttgacattaa gattgagccc gtaaagattg gtcagaccga
    18541 cattcccatc ctcacggtca ttaaactcca aagagaagcc tgcgacagct gtctgctgca
    18601 cttttgccaa atccgaaatc ttttcaagac cataatcttg agcatagtct tctgtcacag
    18661 ccaaagcata ggtattctgg aaagccattg gtgctaaata catcagacca tcctgctcca
    18721 aaatcgcttc tttagcgtaa gtataaacct cctcaggatt gttggacaaa tcagacggcg
    18781 gattgctcaa gagggtggtc gtaatggtac cagtgtactc agggtaaaga tcaatcgagc
    18841 ctgatttgag ggcttcatag aggaagctgg tcttgccaaa gtttggctcc aactccacct
    18901 caatatcagt ctgatcttca atcaagagct tgtacatatt gatgaggatt tcaggctctg
    18961 ctcccaattt cccagcgatg actagctttt tagatgactt ttggttgagc ggaacatagc
    19021 tagctccgac tgccaaaagt gtcactaaga gagccgctag aatagtacga ggcttcttgt
    19081 cctgcaagaa cttgatgact gagccaaaga ggacagccaa gactgccgac gacaccgccc
    19141 caatcaaaat cagggccgag tcattgcggt caattccaag tagaataaag gagcccaggc
    19201 ccccagctcc caccaaggct gccagagtcg ccgttccgat aatcataata gaagccgtcc
    19261 gaatccctga catcaaaata ggcatggcaa gagctaactt aaattttttc aacttctccc
    19321 atttattcat accaaaagcg gttgctgctt cttccagaga agggtcgatt tctccaagtc
    19381 ctgtcaatgt cccctgcaag ataggaaaga tagcataaat aacaagtgct actactgctg
    19441 gcaaggttcc gattcccata aaaggaatga aaagaccaag caaagcaagg gatggaatag
    19501 tttggaagat acctgttatt tgcagactcc actcggtcag ctttttcttg ttagacaaga
    19561 ccaagcccag tggcaccgca atggcaatgg cgataatcaa ggccagaagg gaaatccgca
    19621 ggtgctcaaa gagggctgtc agccagtccg ccttgcgttc cagaaaggtt gttaccaact
    19681 gatccattag gcacctcccc gatttttcat aaattcaaca acaaagtcat tagcaggctg
    19741 gttgtggagc tcatcaggcg tgcccaactg gaccacttct cctgccttca tcaagcagat
    19801 acggtctgcc agcttaaccg cttcgtccat atcatgcgtg acgaaaaccg ttgtcatctt
    19861 aaattcttca tgcaagtctt tgattaggtc ctgcaactgt cccttgctaa tagggtctag
    19921 agctgagaaa ggctcatcca tcagcaaaac cttgggattg gcaatgatcg ctcgcagaat
    19981 cccaatccgc tgtttttctc caccagacaa gtccttgggc agacgatcca aatagctgtc
    20041 cggctccaac cccaccttgg tcaagagttc cctggttttg gctaagattt cagtcttgtt
    20101 caaacccttc atctcaggaa taagggcgat attttcagcc actgtcatat ttggaaataa
    20161 agcaatctgc tgaaggacat agcctgtttc caagcgtaac tcacgcaagt caaagtcttt
    20221 cagccgcttg ccctgaatcc gaatatctcc gtctgtctgc tcaatcaggc ggttgatcag
    20281 tttcagcgtg gttgtttttc cgctaccgct tggtccaatc aaaacaaaga attctccctc
    20341 ttgaacgtca aaagtcaagt tcttcaagat tggtccgttg acctgatagg tcaaggacac
    20401 attttggtac tcaatcattc gtttctcctc ctatgatttc tgtcaaggcc tgtccatagc
    20461 gaccaaagag gtctagtaac tgctcctgtt cttccaagct gaactgggac agggctgttt
    20521 tttccgcctc ttccaagggg tccaaaatcc gactggcata gacacgacct tcctcggtca
    20581 atttgacctt cttatgccgt ttgtctgctg gattttcctc aaaaaagaca tagcctttgt
    20641 ccagaaattt cttaatggtg gcattgacca cctgcttact agagtaagtc ttcttactga
    20701 tccaattctg cgtcacacct ctggatatat aataaataaa catcaaaatg gataaggact
    20761 tgctgtttag cccatgcctc cttgcatagt cctcatatag accatcctga ttgtaaaaaa
    20821 tccgagcaag tatcttactc cgctgtctca attctgtcat catcttcctc cctattcagc
    20881 acaatcacct tgccaaaagc ctctggtcta ctagtgttca aaacaacaac aattttcaca
    20941 acgacttcct cctgtaatca tgttagtcaa tattttttac tattttacca aaaaaagaaa
    21001 aatagtcaat tattttgact attttg
//
LOCUS       DASGAC010000019        20937 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.019, whole genome shotgun sequence.
ACCESSION   DASGAC010000019 DASGAC010000000
VERSION     DASGAC010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20937)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20937)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20937
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.019"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            245..949
                     /locus_tag="U1335_000544"
     CDS             245..949
                     /locus_tag="U1335_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HEM5231052.1"
                     /translation="MKIHVVNNQVEGATVALDILKEKLNGGAKVLGLATGSSPLEFYR
                     LIRESDLDFSDATSVNLDEYVGLGEESDQSYIHFMKENLFNDKPFKKSYLPDGLATDV
                     VAETERYNKILAEHPVDFQILGIGRNGHIGFNEPGAPFDGQTHLVELAPSTIEANARF
                     FDNPEDVPKQAISMGIANIMAAKTIVLMAYGQEKADAIKATVEGAVTEDVPASVLQNH
                     DNVILILDQAAASKLA"
     gene            complement(988..1545)
                     /locus_tag="U1335_000545"
     CDS             complement(988..1545)
                     /locus_tag="U1335_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low temperature requirement protein A"
                     /protein_id="HEM5231053.1"
                     /translation="MNFPHIVERCQLITIITFGETVIVILKNYPIQTHLLTGILFFLT
                     MAFSFMFYILQTYLNINHHQKTNVATLLYAHMVLVLGINFFTVAVEVLPGEHASLGLP
                     FLLIGYFLYFMGILMTSRYNQDLYQLDKMVWLQYAILVFSTIILLIAFHHYLTLIAAI
                     LVASSFMMLVISFRHRNRVQVDLEK"
     gene            1673..2536
                     /locus_tag="U1335_000546"
     CDS             1673..2536
                     /locus_tag="U1335_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004226747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
                     /protein_id="HEM5231054.1"
                     /translation="MSHLQYTAKSHHLQWNLHQLSQICHHFYHNYCPDSFKYRRNVGL
                     AKVSDEALLVLLLLQAELGITSQRHFYSICHLFPCGQLLERSRFNRRSKQLIWLVQFI
                     RKAMSDMLPSDKLAIIDSFPLPLYQTVRNHRVAIFKGLADIGYKASKHLWFYGFKVHM
                     LVTLSGYILNYVVTPASVHDIKVVYELLEGCKQSVILGDLGYLSSELKKDLEQEGYHL
                     WTPFRQNMAGAEEHNNWKVMAMRRTIETRFSELCRLFGIEQILARGLAGLQLRIEQII
                     LAHNLRYFEMN"
     gene            2737..2862
                     /gene="dltX"
                     /locus_tag="U1335_000547"
     CDS             2737..2862
                     /gene="dltX"
                     /locus_tag="U1335_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acid D-Ala incorporation-associated
                     protein DltX"
                     /protein_id="HEM5231055.1"
                     /translation="MQHPVVRFICRTLFYFFILLLLLYLYSYLDIGQGGFIYNEF"
     gene            2852..4414
                     /gene="dltA"
                     /locus_tag="U1335_000548"
     CDS             2852..4414
                     /gene="dltA"
                     /locus_tag="U1335_000548"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltA"
                     /protein_id="HEM5231056.1"
                     /translation="MSFKEESIKKISSMLERVEHFATENPDYPVYHYLGQLYSYGDLK
                     ADSDSLAAHIDSLDLPANSPVLVFGGQEYQMLAIFVALTKAGHPYIPVDSHSALDRIE
                     AILEIAEPSLVFAVADFPLETSLPVLSLSEVEAIFEKKSTYQLMHPVSGDDTYYIIFT
                     SGTTGKPKGVQISHDNLLSFTNWMIRDKEFALPERPQMLAQPSYSFDLSVMYWAPTLA
                     LGGTLFALPKELTLDFKTLFAAIQTLPFKIWTSTPSFVDMALLSREFDGEHLPDLTHF
                     YFDGEELTVKTAQKLCKRFPKAVIVNAYGPTEATVALSAVAITNEMLVNYKRLPIGYT
                     KPDSPTFILDEDGQVVPNGQQGEIVVSGPAVSKGYLNNPERTEAAFFQFDGLQAYHTG
                     DLGVMTDEGLLFYGGRMDFQIKYNGYRIELEEVAQHLNKSTYIEAAVAVPRYNADHKV
                     QNLLAYVVPKAGIMEQFDRELELTKVIKQELKERMMDYMMPSKFIYRDSLPLTANGKI
                     DIKGLIAEVNAQ"
     gene            4411..5652
                     /gene="dltB"
                     /locus_tag="U1335_000549"
     CDS             4411..5652
                     /gene="dltB"
                     /locus_tag="U1335_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltB"
                     /protein_id="HEM5231057.1"
                     /translation="MMEFFKQLPQLEPYGNPLYFFYLVLALVPIFIGLFFKKRFPLYE
                     TGVSLAFIVLMFTGTKTMQLLSLLAYIIWQTMLIFFYKYYRQRANQSWVFYLIVCLAV
                     FPLTWVKLAPTFSQHGAIFGFLGISYLTFRSVGMMIEMRDGLLTEFSLGSFLRFLLFM
                     PTISSGPIDRYRRFTEDYKQIPERTELLNMLDQTVHYIMMGFLYKFILAYFIGHTLLE
                     PLKAVALDQGGWFNLPTIGVMYLYGFELFFDFAGYSMFAIGISNLMGIRCPINFDQPF
                     KSRDLKEFWNRWHISLSFWFRDFVFMRLVKTLLKHKVFKNRNTVSNVAYLLNMLLMGL
                     WHGVTWYYIAYGLFHALGLIINDAWIRKRKSINLARKKAGQEPLLDNRWTSFAGMFVT
                     FHTVMFSFLIFSGFLDKLWFK"
     gene            5695..5934
                     /gene="dltC"
                     /locus_tag="U1335_000550"
     CDS             5695..5934
                     /gene="dltC"
                     /locus_tag="U1335_000550"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005591431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltC"
                     /protein_id="HEM5231058.1"
                     /translation="MDVKETILNIIEELFMEDVSEMMDEDLFDAGVLDSMGTVELIVE
                     LESRFNITVPVSEFGREDWNTANKIISGVVELMHA"
     gene            5927..7192
                     /gene="dltD"
                     /locus_tag="U1335_000551"
     CDS             5927..7192
                     /gene="dltD"
                     /locus_tag="U1335_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltD"
                     /protein_id="HEM5231059.1"
                     /translation="MRKQLWQIFGPVICATFLVILTLLFFPSSSRSNFKEEKQDAVAL
                     SYISFKSKYKKNRALGDKNHRFVPFFGSSEWSRFDSMHPSVLADAYQREYTPYLLGQR
                     GAASLTQYFGMQQIGAHLKNSQAIYVVSPQWFSPKGASSKAFEQYFSSDQATHFLQTS
                     AEDDYDRYAAKRFLELKSDCSLTGMFQKVAGGKELSKWDREQLTWQAYLLEKQDALFS
                     RFADSGSNLGLVETEAMKLPEPFSYDRLSKVANEDGSRSTQSNDFQIDDRFYRNRLQS
                     KIKKLKQSQTKISYLQSPEYNDFQLVLNEFAKHQTDVLFVIPPVNERWMNYTGLNKDM
                     YRATVAKIKYQLTSQGFNHIADLSEQGGIDYFMQDTIHIGWQGWLELDKYIHPFLTEQ
                     QAPVHYQLKKEFLTSEWAAYKGDLNLFLK"
     gene            complement(7282..8399)
                     /locus_tag="U1335_000552"
                     /pseudo
     CDS             complement(7282..8399)
                     /locus_tag="U1335_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922179.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="low temperature requirement protein A"
     gene            complement(8472..9428)
                     /locus_tag="U1335_000553"
     CDS             complement(8472..9428)
                     /locus_tag="U1335_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000523788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEM5231060.1"
                     /translation="MELLQDGKWVDQWYDTKSTGGKFVRTVTQFRNWITPDGQAGPTG
                     KGGFKAESGRYHLYISLACPWASRTLIMRKLKGLEDHISLSIVHPLMLENGWTFADGP
                     GVIKDSLFNSDYLYQVYLKADPHYTGRVTVPVLWDKETNTIVSNESAEIIRMFNTAFN
                     DITGNQDDYYPADLQAEIDAMNDFVYPNINNGVYKAGFSTDQKVYEKEVKNLFAALDK
                     LEEHLADKDYLVGNQLTEADIRLFTTLVRFDPVYFGHFKCNIKALVDYPNLWDYTKRI
                     YNHSGIAETVDFDHIKQHYYGSHKTINPTGIVPVGPDLDWTL"
     gene            9567..10283
                     /locus_tag="U1335_000554"
     CDS             9567..10283
                     /locus_tag="U1335_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEM5231061.1"
                     /translation="MRLDKCLEKAKVGSRKQVKKLFKAQQIKINGQAAQSLSQIVDPE
                     LQTIQVSGKKVALEGSAYYLLHKPAGVVSAVTDQEHQTVIDLISPQDSREGLYPVGRL
                     DRDTEGLVLITNNGPLGYRMLHPSHHVEKVYYVEVNGCLAEDASKFFASGVTFLDGTR
                     CQPADLTVLEASLDHSRATIKLAEGKFHQVKKMFLAYGVKVTYLKRISFGGFELGDLE
                     RGAYRQLTPNEMEHLFTYFD"
     gene            10297..10776
                     /locus_tag="U1335_000555"
     CDS             10297..10776
                     /locus_tag="U1335_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HEM5231062.1"
                     /translation="MSIYEFTVQKQDGTDQSMAEYQGQVLLIVNTAPGCGLAPQYKEL
                     QELYDSYKDKGFVVLDFPCNQFLNQAPGSAEDINQICSLNYGTTFPRFAKIAVNGSEA
                     SPLYRYLKKEKSTLLGGRIEWNFTKFLVDRQGRVVKRYLPTTSPLKLKEDIELYLEK"
     gene            complement(10795..11796)
                     /locus_tag="U1335_000556"
     CDS             complement(10795..11796)
                     /locus_tag="U1335_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEM5231063.1"
                     /translation="MIRHHNYLKIFTFLLIILFVIFLLSLSIGYSNSSFSDLIDIMSG
                     QASSSTLLIIGRIRLPRIIASIIGGASLALAGLLLQTLTRNPLADSGILGINAGAGLV
                     VALFVGLSSKISPVLLSLMPLFAMMGGGLTIFLVYWIARKKLYGIHPARLIITGVGIS
                     SMLSGIMVSIISQLDDFKMEYIVQWLSGRVNGGDWKTIAIYTPLLLLVWMATFSRSRS
                     LNIMNLNDQTAMALGLHLQRERRTTLVLATALASLSVILVGNITFVGLIAGHIVRKWL
                     GNDHRVIIPATMIIGSFILLLADTIGRVLLVGTGIPTGIIVSLIGAPYFLWLLKQEG"
     gene            complement(11793..12818)
                     /locus_tag="U1335_000557"
     CDS             complement(11793..12818)
                     /locus_tag="U1335_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEM5231064.1"
                     /translation="MNKLVSSRYPKTKPKNIWLVFFIICLSFIAGVYLSLRFGAISYS
                     HQQLIETLKHPLTDSSAQDVIIDLRLPRMVAAILVGAAMAQAGAMMQGITRNPIADPG
                     LLGINAGAGLALIVAYALFGGLHYSQILLICLLGSCLAAGLVFGLAYQVQKGYNQLRL
                     ILSGAMVASLFSAIGQAITIYFDLSTTVIGWQAGGLVQVNWKMLTIIAPLIIIGLILA
                     QLFSHQLTILSLNETVAKNLGQRTLLMTLVLLGIVLLLSASAVALVGSLSFVGLIIPH
                     FIRMFTGKNYKLLLPLTAFAGASFLIWVDLVCRSINPPVETPISAVISIIGLPCFLWL
                     IRKEKHF"
     gene            complement(12832..13761)
                     /locus_tag="U1335_000558"
     CDS             complement(12832..13761)
                     /locus_tag="U1335_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5231065.1"
                     /translation="MKKFLAIFSLFVGLVFLTACSTSSSSTDVELSSMPKIEGITYHG
                     DIPKNPKKVVNFAYSYTGYLLQLGIDVSSYSLDLEKNSPVFGDKLKDVPQLTTADTEA
                     IAAQKPDVILVFAGDDNLETLKEIAPVIEITYGKSDYLKMLTDIGQIFGKEKESQAWL
                     DQWDKKVATAKEELKGLIDTSSTFTVMDFFDKNIFLYGNNFGRGGELIYRALGFAAPA
                     KVQEDIINKEGWFGVSQEALPEYVGDYVLVNVNDKTKEAAASLKESDIWKNLPAVKNG
                     HVIEIDYNLFYFSDPMSLDLQIDAFVSEIQKLQ"
     gene            complement(13774..14559)
                     /locus_tag="U1335_000559"
     CDS             complement(13774..14559)
                     /locus_tag="U1335_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019774490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231066.1"
                     /translation="MSSIQAENIQVSYDNRIIIDELSTSIPKGSITTIIGANGCGKST
                     LLKALTRIIPVQEGAIYLDGQAISQLPTKEVAKKLALLPQVLEATEGISVYELVSYGR
                     FPHQNGLGHLTDQDREKINWALEVTQTALYARLPVDDLSGGQRQRVWIAMALAQDTDT
                     IFLDEPTTYLDLNHQLEVLELLKELNQSRQKTIVMVLHDVNLSARFSDYMIAMKEGDI
                     RYHGSVSNMMTTEILRDIFSIEPQLMQVAGQDYPILLTYDLKK"
     gene            complement(14711..16156)
                     /locus_tag="U1335_000560"
     CDS             complement(14711..16156)
                     /locus_tag="U1335_000560"
                     /EC_number="6.3.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019792455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-
                     lysine ligase"
                     /protein_id="HEM5231067.1"
                     /translation="MITIERVLEILKADTNFCHIKQNNQTDSTWTDVQFDALSYDSRT
                     VSPTTLFFAKGLAFKKEFLEKAIEAGLAFYVSEIDYEVGIPAIIVNDIKQAMSLIAMD
                     FHGHPQKQLKLLAFTGTKGKTTAAYFAFNILKQSKKPAMLSTMNTTLDGKTFFKSALT
                     TPESLDLFAMMAEAVQNGMTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIE
                     HPTFEDYFYHKRLLMDNSRAVIVNAGMDHFEVVKDQVSSKDHDFYGPTSENQISQSAG
                     FDFTATGKLAGHYDIQLIGGFNQENALAAGLACLRLGASLEDIHTGISQTNVPGRMEV
                     LTQQNGAKVFVDYAHNGDSVKKLIDVVLEHQTGKVILILGAPGNKGESRRKDFGLLLN
                     DYPQVEVILTADDPNREDPAAIAEQIRAHMTRPSNFILDREEAIRTAMSQTSSTKDAV
                     IIAGKGADAYQIVNGEKAAYDGDLEVAKQYL"
     gene            16303..17049
                     /locus_tag="U1335_000561"
     CDS             16303..17049
                     /locus_tag="U1335_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEM5231068.1"
                     /translation="MFYSYLRTLLTFLLWAINGNIHYHDREKILPQEENYILIAPHKT
                     FWDPVFLGYAAAPKQFIFMAKKELFKDRGFGWWISKCGAFPIDRDNPGMAAIKYPVNM
                     LKKSDRSLVMFPSGSRHSSELKGGVAVIAKSAKVKLMPATYVGPMTIKGLLAGERIDV
                     AFGNPIDVSDIKRMDDAGTAEVTSRIEAEFKRLDEHATSFQTKKKPNILTYIYRIPVL
                     LLVALILGLTYAFSYIASFFWQPSTQLDKK"
     gene            17116..17778
                     /locus_tag="U1335_000562"
     CDS             17116..17778
                     /locus_tag="U1335_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEM5231069.1"
                     /translation="MDKIKTYIEMLKEYKWQIALPAVAGLLMAMFLIFSQSAKSDQTG
                     LTDFPQTEQTSSSSDLVEETSTEASEEPTQLVVDVKGAVAKPGLYTLEADARVNDAVE
                     AAGGLTSQADPKSINLAQKLSDEAVVYVASKDENISVVASTTTSSAMSQEEKNTSLVN
                     LNTATEADLQTISGIGAKRATDIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVT
                     VD"
     gene            17762..19999
                     /locus_tag="U1335_000563"
     CDS             17762..19999
                     /locus_tag="U1335_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HEM5231070.1"
                     /translation="MLRSIKLPCQPIHLALLAVAAYFVVHSFSLLTMGLLSLLLLVFG
                     FRQGKAVFIKTLPLLALCGLFFGCQQVQWERADQSAPEQVATVQVIPDTIDINGDNLF
                     FRGRADGQTYQVFYKLASQEEQAYFQKLTGLVQLEVEAEVSLPAGQRNFKGFDYQAYL
                     KTQGIYRTVKITAIKKIVPVQSWNVFDWLSSWRRHALVYVKTNFPAPMSHYMTGLLFG
                     ELDSDFDQMSDLYSSLGIIHLFALSGMQVGFFIDKFRWILLRLGLTKETVDKLQIPFS
                     IVYAGLTGFSVSVVRSLVQKILGNLGLRKLDNFAVTVFVCLLILPRFLLTAGGILTFT
                     YAFLLTVFDFEDLGQVKKAAVESLSISLGILPILMTYFYAFQPLSILLTFVFSFVFDV
                     LLLPGLSVIFLLSPLVKMTWGNGFFVFMEKIIVWVADLGLRPWILGKPSGLVLLLLLV
                     CLFLLYDFHRKKKWLLGLSLVLALLFFITKHPLENEVTVVDIGQGDSIFLRDMRGRTV
                     LIDVGGRVDFAAKEEWQERSSQANAERTLIPYLHSRGVDRIDSLVLTHTDTDHVGDVL
                     EVAKQVQIGRIYVSPGSLTVPDFVATLKEINVPVHVVAVGDRLPIFDSYLEVLYPSGT
                     GDGGNNDSIVLYGRLLETNFLFTGDLEQGELDLIESYPNLPVDVLKAGHHGSQGSSYP
                     EFLDHIVAKIALVSAGENNRYKHPHQETLDRFDSRNIQVYRTDQQGAIRFRGWKEWTI
                     ETVRE"
     gene            complement(20320..>20937)
                     /locus_tag="U1335_000564"
     CDS             complement(20320..>20937)
                     /locus_tag="U1335_000564"
                     /inference="COORDINATES: protein motif:HMM:NF019142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G5 domain-containing protein"
                     /protein_id="HEM5231071.1"
                     /translation="VVSVGILETKVTDTAPEQVIKPELKWTTTIVPIPFQTRYIVDNQ
                     LKLGEEIILVPGRNGQRQVITLVNGSVVGRNDEEIISDIVLLDPIEQIIKIGNRSTDK
                     AIDLPSKKEKTDISNLGLTLPNNKVSSTPIKLAETPKSIQYLTDRKYDSTVSPSQLQQ
                     TNGVILPKTGEQKENFLARLGYISLLSLEFCWAISTLLKNKRKSK"
BASE COUNT         6072 a         4037 c         4690 g         6138 t
ORIGIN      
        1 cctttgattt agaaataaaa tagccagtaa ggcagaacag aataccaata aaaaataagt
       61 aaaaaagcac atctgtcata aatgtattat atcatagtta gacacttaag tcttgatgga
      121 tgggaagaga attaaaatta ttcgtgctaa tgtaatactc tgtaagtata aattcttgac
      181 aaaaattggt ctataccata taataaagaa aaacaataaa tggtatagac caaagaggtg
      241 tgttatgaaa attcatgtag taaacaatca agttgaagga gcaactgtag cattagacat
      301 tttgaaagaa aaattgaacg gaggtgccaa ggtattaggt ttggcaacag gctccagtcc
      361 gttagaattt tacagattga ttcgtgagtc ggatttagac ttttcggatg cgacatctgt
      421 aaacttggat gagtatgttg gtttaggtga ggagagcgac caatcctata ttcattttat
      481 gaaggaaaat cttttcaatg acaaaccgtt taagaaatct tatttaccgg atggtttggc
      541 gacagatgta gttgctgaaa cagaacgtta caataaaatt ttggctgaac atccagttga
      601 tttccaaatt ttgggtatcg gtcgcaacgg ccatatcggt ttcaacgaac caggtgctcc
      661 atttgatggt cagacccatc tggttgaatt ggcgccatca accattgaag ccaatgcgcg
      721 cttctttgac aatccagaag atgtaccaaa acaagctatc tccatgggca tcgccaacat
      781 tatggcagcc aagaccattg ttctcatggc ctatggtcag gaaaaagctg acgccattaa
      841 ggcgactgtg gaaggagcag tgacagaaga tgtcccagca agcgtcctcc aaaaccacga
      901 caatgtcatc cttatcctcg accaagcggc agcaagtaaa ttagcataat aaacaaaacc
      961 gactaccatt tttggcagtc ggatttctta tttttcgagg tcaacttgta cacgattgcg
     1021 gtggcggaaa gagattacca gcatcataaa tgaactagca acgagaatag cggcaatcaa
     1081 ggttagatag tggtggaagg ctatcagaag aatgatagtg ctgaatacca gaatagcata
     1141 ttgaagccaa accatcttat ccagttgata aaggtcctgg ttgtagcgac tggtcattag
     1201 gattcccata aagtagagga agtaaccaat gaggaggaaa ggcaagccca aactagcatg
     1261 ctcaccaggt aagacttcca cagcaactgt aaagaagttg atgcctaaaa ccagtaccat
     1321 atgggcatag agtaaggtgg ctacatttgt cttttgatgg tgattgatat tgagataggt
     1381 ttgcaaaatg taaaacataa aggagaaagc cattgtcaag aagaagagaa taccagtgag
     1441 cagatgcgtc tgaatcggat aattcttcaa aatcacaatg accgtctcac caaaggtaat
     1501 aatggtaatc aactgacacc gttcaacaat gtgaggaaag ttcatcacat cgtgactgag
     1561 tttgtccttg aaaaaatagg aaatacccgt ggtgctagtt catttcaaaa tacaataaaa
     1621 agcccaaaag gactatactg taagtgacga aacatacagg aggttagtcc aaatgagcca
     1681 cttacagtat actgctaaat ctcatcattt gcaatggaat ttacaccaat tatcacaaat
     1741 ttgtcatcac ttctaccaca actattgccc ggattccttc aaatatcggc gaaatgttgg
     1801 tttagccaaa gtttcagatg aagcgcttct tgtcttactt ttgttacaag ctgaactagg
     1861 cataacatca caacgccatt tctacagcat ctgccacctc tttccttgtg gtcagttact
     1921 agaaagaagt cgtttcaatc gtcggtctaa acaattgatt tggctcgtcc aattcatccg
     1981 aaaagctatg agtgacatgc ttccatctga taaactagcc attatagata gttttccttt
     2041 gccactttac caaactgttc gtaatcacag agttgccatt tttaaaggat tagccgatat
     2101 tggctacaag gcctctaaac acttatggtt ctacggtttc aaggttcata tgttggtgac
     2161 cttatcaggt tatattctga actatgttgt cacaccagcc tctgtccacg atatcaaggt
     2221 ggtttatgag ctattagagg gatgtaagca atcggttatc ctaggtgatt taggctacct
     2281 gagcagtgaa ctcaaaaagg acttagagca agaaggttac catctatgga cgccatttcg
     2341 acaaaacatg gcaggagctg aagaacataa caattggaaa gtgatggcca tgagacgaac
     2401 tattgaaaca cgtttttctg aactgtgtcg tctctttggc atcgaacaga tattagctag
     2461 agggctggct ggactacagt tacgaattga acaaattatt ctagctcata acttacgcta
     2521 ttttgaaatg aactagcaca cgggtagtct ttgtgtaaca ggtatattct tgtatttttt
     2581 tgtgaaaaaa gaaataaatt gacaaaatta tggtaaaatg taggttgatt taaaattaat
     2641 catctaatga atggaatgag ttcgaagtaa gtcaagattg actagacatt gtatttaaag
     2701 taattcgcag gaataagaga tggaaggaga tagaacatgc aacatccagt tgtacgattt
     2761 atctgtagaa ccctgttcta tttttttata ttgttactac ttttgtatct gtatagttat
     2821 ttagacattg gacagggagg atttatctat aatgagtttt aaagaggaga gtataaaaaa
     2881 gattagcagt atgttagagc gggtagagca ttttgcgaca gaaaatcctg actaccctgt
     2941 ttaccattat ctaggacagt tgtacagtta tggggattta aaggcagatt cagattcttt
     3001 agcagcccat attgatagtt tggatttacc agcaaactct cctgttcttg tttttggcgg
     3061 acaggagtac cagatgttgg caatctttgt tgccttaacc aaggctggcc atccatatat
     3121 ccctgtagat agtcattctg ctttggatcg gattgaagct attctggaaa tagcagagcc
     3181 gagtttggtg tttgcggtag cagactttcc gctagagaca agtttgccag tgcttagttt
     3241 gtctgaagtt gaagccattt ttgagaagaa gtcaacttat cagttgatgc atcctgtaag
     3301 tggagatgat acctactata ttatcttcac ttctgggaca acgggtaaac caaaaggggt
     3361 gcaaatttcg catgacaatt tgctcagctt caccaactgg atgataaggg ataaggagtt
     3421 tgcgctacca gagcgaccgc aaatgttggc tcaaccttcc tattcgtttg acttgtcggt
     3481 tatgtattgg gctccgacgc ttgcccttgg tgggacccta tttgccctac cgaaagagtt
     3541 gactttggat tttaaaacct tatttgcagc tattcaaact ttgccattta agatttggac
     3601 ttcgacacca tcatttgtcg atatggcttt gctatctcgt gagtttgatg gggaacattt
     3661 accagatttg acgcatttct attttgacgg agaggagtta actgtaaaaa cagctcagaa
     3721 gctctgcaaa cgttttccaa aagctgtgat tgttaacgct tatggaccga ccgaagctac
     3781 agtcgcctta tcagcagttg ctataactaa tgagatgtta gtgaattata aacgtttgcc
     3841 gattggttat accaaaccag actcgccaac ttttattttg gatgaagatg gtcaagtagt
     3901 accgaatggt caacagggag aaattgttgt atcaggtcct gctgtctcta aaggatattt
     3961 gaataatcct gagagaaccg aggcggcatt tttccagttt gacggcttac aggcctatca
     4021 tactggggat ttgggtgtaa tgacagatga aggtctgtta ttctatggtg ggcgtatgga
     4081 tttccaaatt aaatataatg gttatcgtat cgagttggaa gaagttgccc aacacttaaa
     4141 taaatcaacc tatattgagg ctgcggtagc tgttccacgt tataatgctg accataaagt
     4201 gcaaaatctg ttagcttatg ttgtccctaa agcagggatt atggagcagt tcgatcgaga
     4261 gttggagtta accaaggtca tcaagcagga attaaaagaa cggatgatgg attatatgat
     4321 gccttcgaag tttatttatc gagacagtct tcctttgact gcaaatggga agattgatat
     4381 taagggattg atcgctgagg tgaatgctca atgatggagt ttttcaaaca gctacctcag
     4441 ttagagcctt atggaaatcc attgtacttt ttctatctag tcttggcgct agtaccaatt
     4501 tttataggac tcttttttaa aaaacgtttc cccttgtatg aaacaggtgt tagtttagcc
     4561 ttcattgtct tgatgtttac aggtacaaag acaatgcaat tgctgtcttt attggcctat
     4621 attatttggc agacaatgtt gatttttttc tacaagtatt atcgtcaacg ggcaaatcaa
     4681 agctgggtct tctatttaat cgtatgttta gctgtttttc cgttgacttg ggtaaagttg
     4741 gcaccgactt ttagtcagca tggggcaatt ttcggttttt taggtatttc ttatttaacg
     4801 tttcggtcgg tcggaatgat gattgaaatg cgggacggtt tactaacgga atttagttta
     4861 gggagttttt tacgattttt gctatttatg ccaactattt cgagtggtcc tattgatcgt
     4921 tatagacggt ttacggaaga ttacaaacaa attcctgagc gaactgagtt attaaatatg
     4981 ctcgatcaga ctgtgcatta tattatgatg ggcttcttat ataagtttat tctagcctat
     5041 tttatcgggc atactttact ggagccttta aaggcagtcg ccttggatca aggtggatgg
     5101 tttaacttac ctactattgg agttatgtat ctctatggtt ttgaattatt ctttgacttt
     5161 gcaggctatt ccatgtttgc cataggtatt tccaatctta tgggtattcg ttgcccaatt
     5221 aactttgatc aaccgttcaa atcgcgtgat cttaaggaat tttggaatcg atggcatatc
     5281 agcttatctt tttggttccg tgatttcgtc ttcatgcgtc tggttaagac tttgttaaaa
     5341 cataaggttt tcaaaaatcg aaatacggta tctaatgttg cctatctgtt aaatatgctc
     5401 ttgatgggct tgtggcatgg tgtaacatgg tattatattg catatggtct ctttcatgct
     5461 ttggggttga tcatcaatga cgcttggatt cgtaagagga aatcaattaa tttagctcga
     5521 aaaaaagctg ggcaagaacc actgctggat aatcgttgga cgagtttcgc tggtatgttt
     5581 gtgaccttcc atacggtcat gttctctttc ttgatatttt caggattttt agataaattg
     5641 tggttcaagt agacaatagg taacgattgt atgaatcgta gaaaggaata aaaaatggat
     5701 gtaaaagaaa caatattgaa tattatcgaa gaattattta tggaagatgt atctgaaatg
     5761 atggatgaag acctatttga tgcgggtgtt ttggatagta tggggaccgt agaacttatt
     5821 gtggagttag aaagtcgttt taatattaca gttccagttt cagagtttgg tcgtgaagat
     5881 tggaatacag ctaacaaaat catttctggt gttgtggagt tgatgcatgc gtaagcaatt
     5941 gtggcagatt tttgggcctg tgatttgtgc aacgttttta gttattctca ccttgttgtt
     6001 tttcccgagt tcttctcggt caaatttcaa agaagaaaaa caagatgcag tagcattgtc
     6061 ttatattagt tttaagagca aatataagaa aaatagagct ctgggagaca aaaatcatcg
     6121 ctttgttcct ttctttgggt caagtgaatg gtcacgtttt gatagtatgc atccgtcagt
     6181 gttggcagat gcctatcaga gagagtatac tccctatttg ttaggacaac gtggtgcagc
     6241 ttcgctgaca caatattttg gcatgcaaca gattggggca catttaaaaa atagtcaggc
     6301 tatctatgtt gtttctcctc aatggttttc acccaaaggg gcatcatcta aggcatttga
     6361 acaatatttt agtagtgatc aagccactca ttttctgcaa acaagtgctg aggatgacta
     6421 tgatagatat gcagcaaagc gtttcttaga gcttaaatca gactgtagtt tgacaggaat
     6481 gtttcaaaaa gtagctggtg gtaaggaatt gtcgaaatgg gatagagagc agttgacctg
     6541 gcaagcctat ttattagaaa agcaagatgc cttatttagt cgctttgctg attctggtag
     6601 taatttagga ttggtagaaa cggaagcgat gaaacttcca gagccttttt cctatgaccg
     6661 cttgagtaaa gtggctaatg aggacgggag tcgttctact caatcaaatg atttccaaat
     6721 tgatgatagg ttttatagaa atcgtcttca gtcaaaaatc aaaaaactca aacaatccca
     6781 gacaaaaata tcttatctgc aatcaccgga gtacaatgat tttcagctgg ttttgaatga
     6841 atttgctaaa catcagactg atgtgctatt tgtaattccc ccagttaatg aacgttggat
     6901 gaactacact ggtctcaata aagatatgta tcgggcaaca gtagcaaaga ttaagtacca
     6961 gttgaccagt caaggtttca atcatattgc tgatttgtcg gagcaggggg ggatagatta
     7021 ttttatgcaa gatacaatcc acatcggttg gcaaggctgg ctggagcttg ataagtatat
     7081 ccacccattc ttgacagaac aacaagcacc tgttcattat cagttaaaaa aagaattttt
     7141 aacttccgaa tgggctgcat ataagggaga tttaaactta tttttgaaat agttagatac
     7201 agttataata aaaagcaaga aggctttgaa ttaggaagtc tccttgcttt ttttgttctt
     7261 ttactgtaat aaactgaatg attatatatc ttcccccaac aaactgtggt tggctttgcg
     7321 gaagcgaata acatgatagg caaccatagc gtgtgagagc aggtttaaga taacaaatag
     7381 taggatattt gaatgaccat ccagcaataa ggcaacattt cccattagta aaatgagagc
     7441 atagatgaac agccctttcc taccaacttg atggacttgt tgattataga aggaggtcga
     7501 aaggatacca ctatagaaga taaggtttcc tacaatcagc atgggcaagg ccaaaaatca
     7561 ttatgatgac tagggaaaag ctccattgcc actgtgaaga aattcaagcc aagaacaatc
     7621 accaaatgag cgtatagcag aacagtcgca tctgccttgc ggtgatggtt gatattgaga
     7681 taggtttgcg aaatgtaaaa cataaaggag aacgccatag ccaagaagaa gagaacacca
     7741 gtgagtagat gcgtctgaat cggataattc ttcaaaatcg caatgaccgt ttcaccaaaa
     7801 gtaataatag taatcaactg acaccgttca acaatgtgag gaaagttcat gacatcgtga
     7861 ctgagtttgt ccttgaagaa ataggaaatg acaaatggaa gataaaaaag caagaggctc
     7921 ttttcatcat aggtccagaa attgaagtaa atagctacca aagccaagaa aaataccagc
     7981 aaataaatcc caaacatata gagactatgc ttaatatcag ccgtaaaacc gatttttcgc
     8041 ccccgaaggt agtactgcaa gcaaagtagc aaataagaca gggtcaaaaa gatagtaaag
     8101 ggtagggctg tcgctttaaa atcatgacta aagtttaggg ataattgccc caccacaaac
     8161 atagaagcga tgatagtgaa aatatccagc aaatctcgct caccatattt gttgaggtaa
     8221 atcgcctcgt taatccacaa ggtcataata atcaggttgg cggtgataaa agttagaatt
     8281 tccctgagac cgatatggtc accgtgcaaa agtccagtca gtgaagaggt agctaataca
     8341 aagaccaagt cataaaacaa ttcatagttg gatacgcgtt ttgcgataat ttcagacatg
     8401 gaagtctcct tttcaaaaaa tctgaactat tataccatac gaaaagggag actgtcatct
     8461 ccccttgtct gttagagcgt ccagtccaag tcaggtccga caggaacaat gcctgttggg
     8521 ttaatggttt tgtggctacc gtagtagtgc tgtttgatat ggtcaaagtc caccgtttct
     8581 gcaataccag agtggttgta aatccgcttg gtataatccc acaagtttgg atagtcaacc
     8641 aaagccttga tattgcattt gaaatgccca aagtaaacag gatcgaatcg caccaaagtg
     8701 gtaaagagtc gaatatcagc ctctgtcagc tggttgccaa ccagatagtc cttgtctgct
     8761 aaatgctctt ccaatttatc caaggcagca aagagatttt tgacttcttt ttcatagact
     8821 ttctgatcgg ttgaaaaacc tgccttgtag actccgttgt tgatatttgg atagacaaag
     8881 tcattcatgg catcaatctc agcctgcaag tctgctggat aataatcatc ctgattgccc
     8941 gtgatgtcat tgaaagcggt gttgaacatg cgtataatct cagcagactc gttgctgacg
     9001 atggtattgg tttccttatc ccacaggaca ggaaccgtca cccggccagt gtagtgtggg
     9061 tcagccttca aatagacctg atagagatag tcgctattaa agagggaatc cttgatcacg
     9121 ccaggtccgt ctgcaaaagt ccagccattt tctagcataa ggggatgaac gatagacaag
     9181 gaaatatggt cttccaagcc cttcaatttt cgcataatca aggtccgact agcccaagga
     9241 caagccagag aaatatagag gtgatagcga ccagactcgg ccttgaaacc gccttttcct
     9301 gtcggacctg cctgtccgtc tggcgtaatc cagttgcgaa attgtgtgac agtacggaca
     9361 aacttaccgc ctgttgactt ggtatcatac cactgatcga cccatttgcc atcttgtaaa
     9421 agttccatga attttctccc ttactgaaaa aatgggaaat ccaataggat gattggattt
     9481 cctttgtaaa aaaatatatc actaactagt attataaacc tttttcaaaa agagtcaagc
     9541 tatatgattt gtgatacaat agtcccatga gattggacaa atgtttagag aaagccaaag
     9601 ttggctcgcg taagcaagtt aaaaaacttt tcaaagccca gcaaatcaag attaacggac
     9661 aagcagctca aagcctaagc cagattgttg acccagagtt acaaactatc caagtttcgg
     9721 gtaaaaaagt tgccttagaa ggttctgcct attatttgct ccataaacca gcaggagtcg
     9781 tttctgccgt gacagaccag gagcatcaga cagtcatcga cttgatttct ccgcaagaca
     9841 gtagggaagg tctctaccca gtcggtcgcc tggacaggga taccgaaggc ctagtcctca
     9901 ttaccaacaa tggtccgctc ggttatcgca tgctccatcc cagccaccat gtggaaaagg
     9961 tctactatgt ggaggtaaat ggatgcttgg ctgaggatgc ttcaaaattt tttgcttcag
    10021 gtgttacttt cttggatgga acacggtgtc agcctgcaga tttgactgtt ttggaggctt
    10081 ctttggatca tagcagagcg accatcaagc tggcagaagg taagtttcat caggtcaaaa
    10141 agatgttttt agcctatggt gtcaaggtca cttatctcaa gcggatttcc tttggtggtt
    10201 ttgaactggg ggatttggaa cgaggtgcat acagacaact cactccaaat gaaatggaac
    10261 atttattcac ttattttgac tagaggagga tatataatga gcatttatga atttacagta
    10321 caaaaacaag atggcacaga tcagtccatg gctgagtatc aaggacaagt tttacttata
    10381 gtcaatacag cgccaggttg tggattggca ccacaataca aggaactaca ggagctatat
    10441 gatagctata aagacaaagg ttttgtagtg ttggatttcc cttgcaatca atttttaaat
    10501 caggctcccg gttctgcgga agacatcaat cagatctgta gcttgaatta tggtacaact
    10561 tttcctcgtt ttgctaaaat tgctgtgaat ggttctgaag ctagtccgct atatcgctat
    10621 cttaagaaag aaaaatcaac cttattagga ggtcgaattg agtggaattt taccaagttt
    10681 ttggtggata gacaagggcg tgtggtcaaa cgatatttac caacaactag tccattaaaa
    10741 cttaaagagg atattgaact ttacctagaa aaataacaag aaggctggag tcatctagcc
    10801 ttcttgtttt agtaaccaca gaaaataggg agcgccgata agggagacga tgatgccggt
    10861 tgggatgcct gttccgacaa gtagtactcg tcctatggta tccgctagaa gtagaatgaa
    10921 gcttcctatt atcatagtag ctggaataat gacacgatgg tcatttccta accatttgcg
    10981 cacaatgtga ccagcaatga gaccaacgaa ggtgatatta ccaactaaaa tgacactaag
    11041 agaggctagg gcggtagcca ataccaaggt agtccgcctt tcacgctgta agtggagtcc
    11101 caaagccatg gctgtctggt cgtttagatt cataatattg agtgagcgac ttcgactaaa
    11161 tgttgccatc cataccaata gaagaagagg agtatagatt gcgatagttt tccaatctcc
    11221 accatttact cgaccgctga gccactggac aatgtattcc atcttaaagt catctaattg
    11281 gctgatgatg ctgaccatga taccagacag catactcgaa attccaactc ccgtgataat
    11341 taagcgtgca ggatggatgc cgtacagctt cttacgtgca atccagtaaa ctagaaaaat
    11401 ggttaatcca ccgcccatca tagcaaatag aggcatgaga ctcaataaga cagggctgat
    11461 ttttgaagag agaccgacaa atagtgccac aacaagacca gctcctgcgt tgattcctaa
    11521 tattccagaa tctgccagag gattgcgggt caaagtttgt agcaacaaac ccgccaaagc
    11581 cagagaagcc cctccgataa tggaggcgat tattctaggt aagcgaattc gcccaatgat
    11641 cagtagagtc gatgaactag cctgcccact catgatgtcg atgagatccg aaaaggatga
    11701 attgctatag ccgatagata aggaaagtag gaaaatgaca aataaaatga tcagcaggaa
    11761 tgtgaatatt tttagatagt tgtgatgtct tatcaaaagt gtttctcctt tctaatcaac
    11821 cataggaagc aagggagacc aatgatactg atgactgcgc taatgggagt ttcaacaggt
    11881 ggattgatag aacggcaaac caaatctacc cagatgagga aactagcccc tgcaaaggca
    11941 gttaatggca agagtagctt gtaatttttc cctgtaaaca ttcggataaa gtgaggaata
    12001 atgagcccga caaaagaaag tgagcccaca agagctaccg cagaagctga gagtagaagg
    12061 acaattccca acaaaaccaa ggtcatcagt aaggttcgtt gacctagatt tttagcaacg
    12121 gtttcgttga gactcaggat ggtcagctga tgcgaaaaga gttgagcaag gatgaggcca
    12181 atgatgataa gaggagcaat gatggtcagc atcttccagt ttacctgtac caatccccct
    12241 gcttgccagc caatcactgt agttgataaa tcaaagtaga tagtaatagc ctgaccaata
    12301 gcagaaaata gacttgctac catggcgcca gataaaatta aacgtagttg attgtagcct
    12361 ttttgcacct gataagctag accaaagact agaccggctg ccagacagga gcccagtaaa
    12421 catattaata aaatttgact gtagtgcaaa ccgccgaata gagcataggc aacaatgaga
    12481 gcaagtcctg ctccagcatt gattcctaat aagccaggat cggcaatcgg attgcgtgta
    12541 attccttgca tcattgcccc agcttgggcc attgcagctc ccaccaagat ggcggctacc
    12601 attctaggca agcgcaaatc gatgataaca tcctgagcgg aagaatctgt cagtggatgc
    12661 tttagggttt ctatcagttg ttggtggcta taagaaatag ctccaaagcg taaactaaga
    12721 tagactccag ctatgaaaga aagacagatg atgaaaaaaa caagccaaat attctttggc
    12781 tttgttttgg gataacgaga acttactagt ttgttcatat atccagtcct tttactgaag
    12841 tttttgaatt tctgagacaa aggcgtcaat ttgtaaatct aaagacatcg gatcggagaa
    12901 gtagaagagg ttatagtcta tctcgatgac gtgaccattc tttacagcag gtagattttt
    12961 ccaaatatca ctttctttga gagaggcagc tgcttctttt gttttatcat tgacgttaac
    13021 aaggacataa tcgccaacat attctggaag agcttcttga gataccccaa accagccttc
    13081 tttattgatg atgtcttctt gaacctttgc aggagcggca aaaccgagag cgcgatagat
    13141 taattctcca ccacgaccaa agttattacc ataaaggaag atgttcttat cgaagaagtc
    13201 catgacggta aatgttgaac ttgtatcaat caatcctttc aattcctctt tcgcagtagc
    13261 aactttctta tcccattgat ctaaccaggc ttgtgattcc ttttcttttc caaaaatctg
    13321 accaatatct gtcagcattt tcaagtagtc actctttcca taagtgattt caataactgg
    13381 agcaatttct ttcagtgttt ctaagttatc atcaccagca aatactagaa taacatctgg
    13441 cttttgtgcg gcaatcgctt ctgtatctgc cgttgtcaat tgtggaacat cctttagttt
    13501 gtctccaaag acgggactat ttttctctaa atctagacta tagctagata catcaattcc
    13561 taattgtaag agatagcctg tgtaagagta agcaaagttg acaacttttt taggattttt
    13621 aggaatgtca ccgtggtaag taatgccttc aatctttggc atgctagaca attctacgtc
    13681 tgttgaagag gaagaggtag aacaagctgt taagaaaacc agcccaacaa ataaactaaa
    13741 aatagctaaa aactttttca ttttttctcc ttattatttt tttaaatcgt aagttagcaa
    13801 aatagggtaa tcttgaccag caacctgcat caattgaggt tcaatgctaa aaatgtccct
    13861 cagtatctca gttgtcatca tattggacac agaaccatgg tagcgaatat ctccctcttt
    13921 catggcaatc atataatctg aaaatcgagc tgataaattg acatcgtgaa ggaccatcac
    13981 aatggttttc tgtcggcttt gattcagttc ttttaaaagt tctaagactt ccaattgatg
    14041 attgagatca agataggttg ttggttcatc taagaaaatg gtatccgtat cttgggcaag
    14101 tgccatcgca atccaaaccc gttgcctctg accacctgat aaatcatcaa ctggtaacct
    14161 agcgtagaga gcggtctgag tgacttccaa ggcccagttg attttctctc tatcctgatc
    14221 agtgagatgt cccagcccat tttgatgcgg aaagcgaccg taggagacca gttcatagac
    14281 ggaaatccct tctgtcgctt ctaagacctg agggagcagg gctaattttt ttgcaacttc
    14341 tttggttggc agttgtgaaa tggcttgtcc atctaaatag atagcccctt cttgaacagg
    14401 gataatcctt gtcaacgcct taagcaaggt cgattttcca cagccattgg caccaatgat
    14461 cgtcgttata cttccttttg gaatacttgt tgataattca tcaatgataa tccgattgtc
    14521 gtaagagact tggatatttt ccgcttgaat cgaagacaca aactcctcct taccagaata
    14581 tgattcatta ataatttgtt ccgaccagta ttatatcaaa aaaatttacc aaaacaaaga
    14641 gttttctgaa aattttaatt taacaagaat cgttataaaa aagtccttgt ctgtgaacaa
    14701 ggaccgtatg ttacaaatat tgttttgcta cttccaaatc accgtcatag gcggcttttt
    14761 cgccgtttac aatctggtag gcgtcagccc ctttgcctgc gatgatgacg gcatctttcg
    14821 tagagcttgt ctgactcatg gctgtgcgaa tggcttcttc ccggtccaag ataaagttgc
    14881 ttggacgggt catgtgggca cggatttgtt cagcaatagc agctggatct tcacggttgg
    14941 ggtcatcagc tgtcagaatc acctcaacct gcggatagtc attgagtaga agaccgaagt
    15001 ctttgcggcg actttctccc ttgttaccag gagcgcctaa aatcaagatg accttacctg
    15061 tttgatgttc caagacgaca tcaatcagct tcttgacact atcgccgtta tgagcgtagt
    15121 ccacgaatac cttggccccg ttttgctggg tcaggacttc catgcgacca gggacattgg
    15181 tttgggaaat tcctgtgtga atgtcctcta aacttgcacc caagcggaga caggcgaggc
    15241 cggctgcgag ggcattttct tggttgaagc caccgatcag ctggatgtcg tagtggccag
    15301 ctaatttgcc ggtcgctgtg aagtcaaaac ctgctgattg gctaatctgg ttttcagaag
    15361 tcggtccata gaagtcatgg tcctttgagc tgacttggtc tttcacgact tcaaaatggt
    15421 ccatcccagc attgacaata acagctctgc tattgtccat caaaagccgc ttgtgataga
    15481 aatagtcctc aaaagtcggg tgctcaatgg ggccgatgtg gtcggggctg atgttgagga
    15541 agacgccgac atcaaaggtc agaccgtaaa cccgcttgac cagataggcc tggctggaca
    15601 cttccataat caagtgggtc atgccgtttt ggaccgcctc cgccatcata gcaaagaggt
    15661 ccagactttc aggcgtggtc agggcggact tgaagaaggt cttgccgtcc agcgtggtat
    15721 tcatggtcga aagcatggca ggtttcttgc tctgtttaag gatgttaaaa gcaaaataag
    15781 ccgccgttgt tttacccttg gtaccggtga aggctaggag tttgagctgt ttctggggat
    15841 ggccatgaaa atccatagca atcaggctca tagcctgctt gatgtcgttg acgatgatag
    15901 caggaatgcc gacctcatag tcgatttcag acacgtaaaa agcaagccca gcctcgatag
    15961 ctttttccag aaattccttc ttaaaggcca aacccttggc aaaaaagagg gtcgttgggc
    16021 taacagtccg gctgtcatag ctgagggcgt caaactggac atccgtccat gtgctgtcag
    16081 tctggttatt ttgcttgata tggcagaagt tagtatccgc cttcaaaatc tctaatacac
    16141 gttcaattgt aatcatgttt ctattgtaaa actatctagt ggtttttaca agtcgggggc
    16201 tatgtaaata gtgggtattt tgaccgtaaa gttgaatgaa tatgacattt cgttctgacg
    16261 caaatttgtg ctataatagg agggattgaa aaggagaagt ttatgtttta ttcttatcta
    16321 cgaacactat taacattctt gttgtgggcc atcaatggca atattcacta tcatgataga
    16381 gagaagattt tgccacagga ggaaaattat attcttatcg ctccgcacaa aaccttctgg
    16441 gatccagtct ttcttggcta cgcagctgct cccaagcagt tcatctttat ggctaaaaaa
    16501 gaactcttca aagaccgcgg ttttggttgg tggatttcaa aatgtggagc ctttccaatt
    16561 gaccgtgaca atcctggcat ggcagccatc aagtatccag ttaacatgtt gaaaaaaagt
    16621 gaccgttcgc tggtcatgtt tccttctgga agtcgtcatt catctgagct aaaaggtggt
    16681 gtggcggtca ttgccaagtc agccaaggtc aaactcatgc cagctaccta tgtgggtccc
    16741 atgactatca aagggctctt agctggtgag cgaattgatg tggcttttgg gaatcctatc
    16801 gatgtttcgg acatcaagcg tatggatgat gcaggtacag cagaagtaac tagccgaatt
    16861 gaagctgaat tcaaacgctt agatgagcat gcaacttctt tccaaaccaa gaaaaagcca
    16921 aatatcttga cttatatcta tcgtatccca gttcttttgc tggttgctct tatcttggga
    16981 ttgacctatg cctttagcta tattgccagc ttcttctggc aaccaagtac tcagttggat
    17041 aaaaaataag taaatgaaac tcgcagcttg cgggtttttt gtatttttta cgaactatat
    17101 aggtggaggt aatttatgga taagattaaa acttatatag aaatgcttaa agaatacaag
    17161 tggcaaattg ctctgcccgc agtggctggc ttgctaatgg cgatgttctt aatattcagc
    17221 caatcagcta agtctgatca gacaggcctg acagattttc cacagaccga acaaacttct
    17281 agcagctctg acttggtcga ggaaaccagt acagaagcaa gtgaagagcc tacccagctg
    17341 gtcgttgatg tcaaaggagc agtagcaaag ccgggactct acactttaga agctgatgcg
    17401 cgtgtcaatg atgcagttga agcagctggt ggcttgacca gtcaggcaga ccccaagtct
    17461 atcaatctgg ctcagaagct cagcgacgaa gcggtggtct atgtggccag caaggatgaa
    17521 aatatatcgg tggtggccag cacgactacc agctctgcta tgtcccaaga agaaaaaaac
    17581 accagtctag tcaatctcaa tacggcgacc gaggctgact tgcagaccat ttctggtatt
    17641 ggtgccaagc gagcgacgga cattatcgcc tatcgtgagg ccaacggtgg cttcaagtcg
    17701 gtggatgacc tcaacaatgt ttcgggcatt ggcgacaaga ctatggaaag cattcgacct
    17761 tatgttacgg tcgattaagc tcccctgcca gcccattcac ctggctcttt tggcggtggc
    17821 agcctacttt gtagtccact ctttttccct cttgacaatg ggcctgctca gtttgttgtt
    17881 gctggtcttt ggatttcggc aaggtaaggc agttttcatc aaaacgctgc cgcttttagc
    17941 cctatgtggt ctgtttttcg gatgccagca ggttcaatgg gagcgggcag accagtcagc
    18001 cccagagcaa gtggcgactg tgcaggtcat tccagatact attgatatta atggcgacaa
    18061 tctatttttt cgtggtcggg ctgacggaca aacctatcag gttttctaca aattagctag
    18121 tcaggaggaa caggcctatt ttcaaaaact gacaggtctg gtccaactag aagtggaagc
    18181 agaggtcagc ctgccagctg gtcagcggaa tttcaagggt tttgactatc aggcctacct
    18241 gaaaacacag ggtatttatc ggacagtcaa gataactgcg atcaagaaga ttgtcccagt
    18301 ccagtcatgg aatgtttttg actggctatc aagctggcgg aggcatgcct tggtctatgt
    18361 caaaaccaat tttccagctc ccatgagcca ctatatgaca gggcttttgt ttggggagct
    18421 ggatagtgat tttgatcaga tgagtgacct ctattccagt ttgggtatca ttcatctttt
    18481 cgccctgtct ggtatgcaag ttggattttt catcgataag tttcgctgga ttttgttgcg
    18541 tctgggcttg accaaggaaa cagtggataa gttacaaatt cccttttcca ttgtttatgc
    18601 tggtttgaca ggtttttccg tgtcggttgt acggtccttg gtccaaaaaa ttctgggtaa
    18661 tctgggcttg cggaagttgg ataactttgc ggtgacagtt tttgtctgtc tgttgatact
    18721 gccccgattt ttactgacag caggaggtat cttgaccttt acctatgctt ttttgctgac
    18781 ggtctttgat tttgaggact tggggcaggt caaaaaggct gcggtggaga gtctcagtat
    18841 ttcacttgga attttgccga ttctcatgac ctatttctat gcctttcagc ctttgtctat
    18901 cctcttgacc tttgtctttt cctttgtctt tgatgtcctg cttttgccag gtttgtcagt
    18961 tatttttctc ttgtcacctc tggtcaagat gacttggggc aacggatttt ttgtctttat
    19021 ggagaaaatc attgtctggg tggctgattt gggattgcgg ccttggatac tgggcaagcc
    19081 gtctggtctg gtcctcttac tcttgctggt ctgtctcttc ttactttacg atttccacag
    19141 gaaaaagaaa tggctcttag gactgagctt ggtcctcgct ctgctatttt tcataaccaa
    19201 acacccgctg gaaaacgagg tgacggtggt ggatatcggg cagggggaca gtatcttttt
    19261 gcgggatatg cgggggcgga cggtcctgat tgatgtgggc ggacgggttg attttgcagc
    19321 taaggaggag tggcaggagc ggtcttcgca ggcaaatgca gagcggacct tgattcccta
    19381 tctgcatagt cgaggtgtgg acaggattga tagtctagtg ctgacccata ccgacacaga
    19441 tcatgtgggc gatgtactgg aagtggctaa gcaggtccag attggtcgaa tttacgtgtc
    19501 gccgggaagt ctgacggtgc ctgactttgt agcgactttg aaagaaatca atgtccctgt
    19561 tcatgtggtg gcggtaggtg accgcttgcc gatttttgac tcctatctgg aggttctcta
    19621 tccaagtgga acgggcgacg gtggcaataa tgactctatt gtcctttacg gtcgtttgct
    19681 ggaaaccaat tttctcttta caggggactt ggagcagggg gagttggact tgatagaatc
    19741 ctatcccaac ttgcctgtcg atgtcctcaa agctggtcac cacggatccc aagggtcttc
    19801 ctatcccgaa tttctagacc atatcgtagc caagattgcc ctggtatcag caggagaaaa
    19861 caaccgctat aagcatcctc accaagaaac cttggaccgc tttgacagtc gaaatatcca
    19921 agtctatcgt accgaccagc aaggagccat tcgcttccga ggttggaagg agtggacgat
    19981 tgagacggtg agggagtgat ggttttaaaa aagggcccta taatctctct ggtggattta
    20041 cccactgcag aaattatagt gcccattagg ggagttggat ggcataggcc tactagtaag
    20101 tttatgctat tctattcaat actgttttct tatttccaaa gagttttttt atctcttggg
    20161 agaggaggta gacgattagt atagatctgg tcgactttca aaagttccca tcagaaggaa
    20221 ggagtcgtca atgtcataag aattagaagt aaccctatgt tgaactgtct caaaaagtta
    20281 gacggaaaag tctaactttt tttgggatgg aaatacatat tatttactct tccttttatt
    20341 tttgagaaga gttgagatag cccaacaaaa ttctaaagat aatagggaaa tgtatcccaa
    20401 tctggcaagg aagttttctt tttgttcacc tgtttttggt aatattacgc cattggtttg
    20461 ttgaagctgg ctcggagaaa ctgttgaatc atacttcctg tcagtcagat attgaattga
    20521 ttttggtgtc tctgcgagtt taattggagt agagcttact ttattatttg gtaatgttag
    20581 tccaagattt gaaatatctg ttttttcttt tttgcttggg agatctattg ctttatcggt
    20641 actgcggttt ccgattttga taatttgttc gatcggatcg aggagaacaa tatcagaaat
    20701 gatttcttca tcgtttcttc caacgactga gccatttaca agagtaataa cttgtcgttg
    20761 accatttctt cctggaacaa ggatgatctc ttcaccaagc ttcaattgat tatccactat
    20821 gtatctcgtt tggaaaggaa tcggaacaat tgttgtagtc cattttagtt caggttttat
    20881 aacctgctca ggggcagtat ctgtaacttt ggtctctaaa atcccgacac ttaccac
//
LOCUS       DASGAC010000020        20527 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.020, whole genome shotgun sequence.
ACCESSION   DASGAC010000020 DASGAC010000000
VERSION     DASGAC010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20527
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.020"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            154..1446
                     /locus_tag="U1335_000565"
     CDS             154..1446
                     /locus_tag="U1335_000565"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEM5231072.1"
                     /translation="MTSVVVVGTQWGDEGKGKITDFLSANAEVIARYQGGDNAGHTIV
                     IDGTKYKLHLIPSGIFFPEKISVIGNGVVVNPKSLVKEINYLHDSGVTTDNLRISDRA
                     HVILPYHIKLDQLQEESKGENKIGTTNKGIGPAYMDKAARVGIRIADLLDKEIFAERL
                     RTNLAEKNRLFEKMYESTPIEFDEIFEEYYAYGQEIKKYVTDTSVILNNALDQGKRVL
                     FEGAQGVMLDIDQGTYPFVTSSNPVAGGVTIGSGVGPSKIDKVVGVCKAYTSRVGDGP
                     FPTELHDEIGDRIREIGKEYGTTTGRPRRVGWFDSVVMRHSRRVSGITNLSLNSIDVL
                     SGLETLKICVAYDLDGERIDHYPASLEQLKRCKPIYEEMPGWSEDITGVRSLDELPEA
                     ARNYVRRISELVGVRISTFSVGPGREQTNILESVWSSK"
     gene            1556..1879
                     /gene="yajC"
                     /locus_tag="U1335_000566"
     CDS             1556..1879
                     /gene="yajC"
                     /locus_tag="U1335_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEM5231073.1"
                     /translation="MEGLFLPLVMVAMIGFMFYSQRKQQKQRQEALNQIKKGDEIVTI
                     GGLFGIVDEIDDKKVVLDVDGVYLTFERGAIRNRVASSDTTSAVVEEVAVETTEATPE
                     SAIEE"
     gene            1993..2748
                     /locus_tag="U1335_000567"
     CDS             1993..2748
                     /locus_tag="U1335_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HEM5231074.1"
                     /translation="MFKFNFKKKESIETAIEVPKHIAVIMDGNGRWAKKRMQPRIMGH
                     KAGMDALQKVTKTASDLGVKVLTVYAFSTENWSRPEKEVKFIMNLPVEFYDKYVPELH
                     ANNVKIQMIGDHSKLPVPTLNALYKAEQKTKSNTGLILNFALNYGGRDEVTRAVKAIA
                     QDVLDAKFNPGDIDEKLIADYLYTGTLSPTLRDPDLVIRTSGELRLSNFLPWQTAYSE
                     LYFTDIAWPDFDGEALKLAIKEYNRRHRRFGGV"
     gene            2758..3564
                     /locus_tag="U1335_000568"
     CDS             2758..3564
                     /locus_tag="U1335_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEM5231075.1"
                     /translation="MTNDLQKRVIFGGVALAIFIPFLLAGGMAFQFFVGLLAIIATAE
                     LIKMHRLAPNSIEGVLAMLASLVLALPLQNYLTFLPTDGNYTAYAIVVFLLLGSMVFN
                     IGHYNYSDVVFPIASSFYVGIGFHSLILARMAGLNKVFFALCLVWATDIGAYLIGRQI
                     GRRKLLPKVSPNKTVEGFVGGILSAVVVAIIFLIVDKSLLAGYSFGMMLLLVVIFSIF
                     SQFGDLVESAIKRHFGVKDSGKIIPGHGGILDRFDGMIFVFPIMHFFGLF"
     gene            3574..4833
                     /locus_tag="U1335_000569"
     CDS             3574..4833
                     /locus_tag="U1335_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEM5231076.1"
                     /translation="MKGILAFIFIFGVIVVVHEFGHFYFAKKAGILVREFAIGMGPKI
                     FAHTGKDGTLYTIRILPLGGYVRMAGWGEDKTEIKTGSPASLSLNEAGVVTRINLSGK
                     QLDSLSLPMNVTSFDFEEKLEITGLVLEESKTYKVDHDATIVEEDGTEVRIAPLDVQY
                     QNATVWGKLITNFAGPMNNFILGILIFILLFFMQGGVANPSSNAVSITEGGALQAAGV
                     VTGDKILSVNGNATDSYTEVATIISKAATDATTAPSFDLVVEHDGKNRHVSVTAEQVD
                     GAYRIGISPILKTGFVDKIVGGFQEAGATALRVVTALKNLIANFDVKQLGGPVAIYKV
                     SSQAAEFGLVSVLGLMAALSINLGIFNLIPIPALDGGKIVMNILEAIRRKPLKPETES
                     YITLAGVAVMVVLMIVVTWNDIIRVFF"
     gene            5661..7514
                     /locus_tag="U1335_000570"
     CDS             5661..7514
                     /locus_tag="U1335_000570"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000814078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEM5231077.1"
                     /translation="MKQSKMIIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLP
                     LANRVIEKAKNIMREEFDKIDAIEFLAPALLSADIWRESGRYETYGDDLYKLKNREGS
                     DFILGPTHEETVTLLARDAVQSYKQLPLNIYQIQPKYRDEKRPRNGLLRGREFIMKDG
                     YSFHASYESLDQTYDDYKRAYEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAITPDRT
                     DLDRWVVLDKSVASFEEIPEDVLEAIKEELLAWSVSGEDTIAYSSESGYSANLEMATS
                     EYKPSTAVVVEEDLVKVATPDAKTIDEVAAFLNVAEEQTIKTMLFIADGEPVVALLVG
                     NDQVNDVKLKNHLGADFFDVAGPADAEKVFGAGFGSLGPVGLPENIKIIADRKVQDVK
                     NAVVGANEDGFHYTGANAGRDFQVTEYVDIREVKEGEPSPDGHGVLNFARGIEIGHIF
                     KLGTRYSDSMNANILDENGRSMPIIMGCYGIGVSRLLSAVLEQHARLFVNKTPKGEYR
                     YAWGINFPKELAPFDVHLIPVNVKDEEAMALTQSIEASLVGAGYEVLTDDRNERIGVK
                     FSDSDLIGLPIRVTVGKKAADGIVEVKIKGTGDTVEVHVDQLLETLNILNK"
     gene            complement(7560..7934)
                     /locus_tag="U1335_000571"
     CDS             complement(7560..7934)
                     /locus_tag="U1335_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002960428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HEM5231078.1"
                     /translation="MTKVGILLVSHSKNLAQGIIDLVSEVAKDIPITYCGGLEDGSIG
                     TSFEIVQERIEANSADTLLAFFDLGSARMNMELAADFTDKQILIQTVPVVEGCYTAAA
                     LLQAGADLETILEQLQELEIKK"
     gene            complement(7931..8506)
                     /gene="dhaL"
                     /locus_tag="U1335_000572"
     CDS             complement(7931..8506)
                     /gene="dhaL"
                     /locus_tag="U1335_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit L"
                     /protein_id="HEM5231079.1"
                     /translation="MDAKQALLWMETFDKKIQENKDYLSELDSPIGDGDHGGNMARGM
                     AAVMQELSEKDYETADQIFKVVAMQLLSKVGGASGPLYGSAFMGITKASQAGADLADT
                     LQAGLEMIQKRGKAELGEKTMVDVWIPVIATLRESQLTTEIIHKAVQGTKDIAATKGR
                     ASYVGERSIGHIDPGSFSSGLLFEAMLEAGL"
     gene            complement(8517..9506)
                     /gene="dhaK"
                     /locus_tag="U1335_000573"
     CDS             complement(8517..9506)
                     /gene="dhaK"
                     /locus_tag="U1335_000573"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003049938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HEM5231080.1"
                     /translation="MKKIINQPEHVVDEMLKGLVFMHQDLVDRIDGFDVIIRKAEKTG
                     KVGIISGGGSGHEPSHAGFVGKGMLSAAVCGAVFTSPTPDQILEAIKAADEGAGVFMV
                     IKNYSGDIMNFEMAQELAEMEGIEVASVIVDDDIAVENSLYTQGRRGVAGTILVHKIL
                     GHAATTGKSLAEIKELADRLVPQIKTIGLALSGATVPEVGKPGFVLEEDEFEYGVGIH
                     GEPGYKKEKLQPSAKLAEELVEKLAEGFDIQDGEHYGVLINGLGATPLMEQYVFANDV
                     AQLLAKKGVVVDYKKIGNYMTSIDMAGLSLTLIKLEDPSWIDALQAPVEVVAW"
     gene            9653..10198
                     /gene="dhaS"
                     /locus_tag="U1335_000574"
     CDS             9653..10198
                     /gene="dhaS"
                     /locus_tag="U1335_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase transcriptional
                     activator DhaS"
                     /protein_id="HEM5231081.1"
                     /translation="MPTSLITKKRIAKAFKKQLSQKSFDKISVVDIMQEAGIRRQTFY
                     NHFLDKYELLDWIFETELQEQVTDNLTYISGIKLLDELLYYIESNQSFYRQLFEIKGQ
                     NDFVSYLEGYFMVLMEKIINEYQLQEGKMISQQDKHFLILYHANAWIGLIKEGLTQSP
                     CQIHGYWKQMVALVRESFLIL"
     gene            10209..11198
                     /gene="dhaQ"
                     /locus_tag="U1335_000575"
     CDS             10209..11198
                     /gene="dhaQ"
                     /locus_tag="U1335_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DhaKLM operon coactivator DhaQ"
                     /protein_id="HEM5231082.1"
                     /translation="MVFIRNRQATIIEDYLDGFCRTNPKVKKVKGLPIVLQTVQDDHL
                     VPIISGGGSGHEPAHIGFVGKGMLTAAVYGEIFTPPTAEEVLAAIRAVDKGKGVFLVV
                     KNFEADLETFGQAIAQARQEGIAVKYIVSHDDISVDTKNNFRMRHRGLAGTILLHKIL
                     GAAAFTGYSLDELEQLGLSLATEIATIGFATKSAYLPDAAQPLFDLEEGQISYGIGIH
                     GEEGYRTVRFESSEQLANEIVNKLKLKFRWKEGEEYVLLVNNLGTLSELEQGIFLNDL
                     CQFLELEGLQLSYIKTGKFMTSLDMGGISVTLCRVKDRKWLDFLEAPTEAAAW"
     gene            11323..15714
                     /locus_tag="U1335_000576"
     CDS             11323..15714
                     /locus_tag="U1335_000576"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000071418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PolC-type DNA polymerase III"
                     /protein_id="HEM5231083.1"
                     /translation="MSDKFQLLLQQIGMPLDARQSGAFSTATIEKVVLHKVSKLWEFT
                     FRFETPLPLMDYQLFKARLATEFEKVGNKIQFSIVSDAEAFEAGLVEAYYPEAFTEDL
                     CQSAGFKALFQPLEVAYRDGVLWIKGPETIDTVHFRKNHLPNLVEQYKRFGFGNLAVD
                     IEVCQEMTQQQAAAFHAQNEEIYQQANEENLAALEQLAQMAPPPEAAQPFVPEYKKNR
                     PAKVNIEKAEITPMIEVDSEENRIVFEGLVFEVEQKTTKTGRVIINFKMTDYTSSFTL
                     QKWAKNEEEAQKFDMVKKGNWLRVRGNVETNNFTRDLTMNVQEVQEVKKEIRKDLMPE
                     GEKRVEFHAHTNMSTMDALPAVEDLVARAAAWGHKAVAITDHGNVQSFPHGYHAARKA
                     GIKPLFGMEANIVEDSVPIAYNEADVVLSDATYVVFDVETTGLSAVNNALIQIAASKM
                     HKGNIIAEFDEFIDPGHPLSQFTTDLTGITDEHVRGSKPLEQVLREFQDFCQDSVMVA
                     HNATFDVGFMNVNYERAGLPIISQPVIDTLEFARNLYPDFKRHGLGPLTKRFGVALEH
                     HHMANYDAEATGRLLFIFLKDALEKHNLTNLNQLNTELIAEDSYKKARVKHATLYVIN
                     QVGLKNMFKLVSLSNTKYFEGVSRIPRTVLNAHREGLILGTACQEGEVFDDLLSKGID
                     EAVKTAAYYDFIEVMPPALYAPMIAKEQFKDMAEIEETIKQLIEVGRRAGLPVLATGN
                     VHYIDPEEEIYREIIVRALGQGAPINWTIGNGENAQPAPLPKAHFRTTSEMLDEFAFL
                     GESLAREIVITNPNAMLDRFEDVQVVKTDLYTPYIEKAEETVAELTYQKAFEIYGNPL
                     PDIIDLRIEKELTSILGNGFAVIYLASQMLVHRSNERGYLVGSRGSVGSSFVATMIGI
                     TEVNPMPPHYVCPNCQHSEFITDGSYGSGFDLPDKDCEKCGTKYKKDGQDIPFETFLG
                     FDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEENAFRAGTVGTVAAKTAYGFVRGYERD
                     YGKFYRDVEVERLAAGAAGVKRTTGQHPGGIIVFPDYMDVYDFTPVQYPADDVTASWQ
                     TTHFNFHDIDENVLKLDILGHDDPTMVRKLQDLSGIDPQTIPADDKGVMALFSGTEIL
                     GVTPEQIGTPTGMLGIPEFGTNFVRGMVEETKPTTFAELLQLSGLSHGTDVWLGNAQD
                     LIKAGIADLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGMWLKISEEERNGYIQ
                     AMKDNKVPDWYIESCGKIKYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIRAK
                     AFDLATMSGGLERVKAKMEEIALKKKNNEASNVEQDLYTTLELVNEMLERGFKFGKLD
                     LYKSHATDFLIEDDTLIPPFVAMDGLGENVAKQLVAARAEGEFLSKTELRKRGGLSGT
                     LVEKMDEMGILGKMPEDNQLSLFDDLF"
     gene            complement(15994..17451)
                     /locus_tag="U1335_000577"
     CDS             complement(15994..17451)
                     /locus_tag="U1335_000577"
                     /inference="COORDINATES: protein motif:HMM:NF021436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2142 domain-containing protein"
                     /protein_id="HEM5231084.1"
                     /translation="MLTKLNQNKWYLLVCLLACYMVYALYLRNYHASFAIYPIAICMM
                     VLLTLLPTKKEIASFIALLVSGVVFAIVTPVLYTPDEYVHLSRSMHIAQGDINLDNKP
                     EHLVISEDYFAIIDDYTMPPLAVDAFNKPSSKKEVPFNGLADFRTTNAYWFIGYLPQV
                     TGILIGRTLGLSVGVTYYLGRIFNAICYAVLAYIAIKLSGSYKQLMMLVTLMPMNLSL
                     AASYNQDGIALGIIYIAIGLFIHYLTRQNKINTKDILLYTSLCCLLATLKLPYILLIA
                     LLFFIPKERFAIPRPYLSLLGASVLVFGVAAVWFAGYQQITSTTVLKGVGLSGQIQFF
                     FKHPSRAILALSKEFLLSPHRLVSLFYFGFLDLPMRETLIPIFVFYLTVVASNLGREK
                     TKLISRIGSLVIAFSIICGIILVMYLTWTKIGKGSVDGVQGRYYLGVFPLFLLTLASW
                     PLPTFTPPRLSNEFILKGSIIIATMVLLFTVLSTY"
     gene            complement(17463..18248)
                     /locus_tag="U1335_000578"
     CDS             complement(17463..18248)
                     /locus_tag="U1335_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012000433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5231085.1"
                     /translation="MSNLQNQHSFIICAYGDSPYLEDCIQSLLAQTLPTDIALYTSTP
                     SQHIHNICQQYAIPIHVGTGGGIGKDWNQALSVVQTPYVTIAHQDDLYQPTYTQEILT
                     KLQAHPNSLIAFTDYFEKKNGLVIHSNTNLRIKRFLLKGLTLFPTSKIWRHFWLGLGN
                     AICCPAVTYNRTRLADFRFDETMRTNLDWYAWYQINQYDGDFIFVPQALMCHRIHEES
                     ETSHTIADNTRTKEDLMLFELFWPKPIARILNRIYIKGQDSNY"
     gene            complement(18241..19494)
                     /locus_tag="U1335_000579"
     CDS             complement(18241..19494)
                     /locus_tag="U1335_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HEM5231086.1"
                     /translation="MNKIQKNIYFWNLLGNLVAAGVSVFYLLIVSRFSTAQTADDFSM
                     AYAIGNLWVVIGLFQVRNYQGTDIKGTHSFPAYFLARCYSLLFMTVSILPFLQLTSYQ
                     SSYLLVFLLLAYRISDVVSDLYQGLFQQEGRLDIAGQNMTFRYTTSILLLAGCLAISQ
                     NLAFSLAGLAIWNGLVVLLLDVKKGANFSTLRGTNFFSPLLHKEAWGILKACLPLFIN
                     GFLLTYIFNEPKQVIEQGLANGSLTAGMQRDFSILFMPVFFMSLCVLIVRPLITELAK
                     LWHQNNTIEFASICRRLFLSLFLIGSLASLMAYWIGVPVLSLLYGVNLSSYAATLAIL
                     VFAGILYSLSIVCENILTIFRKQQVMVLIYLCLFALSKWLTGPLITSYQLWGAAISFL
                     ITMFVYLLLMSLLTFYYYHKGKKHV"
     gene            complement(19487..19825)
                     /locus_tag="U1335_000580"
     CDS             complement(19487..19825)
                     /locus_tag="U1335_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013903383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2304 domain-containing protein"
                     /protein_id="HEM5231087.1"
                     /translation="MTPTFQVILILTSLITAGLILRRIQKSQVQIQDSLFWLFFSGLL
                     LFLSLFPKVAETVTNLLGISLPVNFVFLFIIFLLIIHQFQLTIRLSKLDNKVKELVQT
                     LAIERLKHDE"
     gene            complement(19829..20524)
                     /locus_tag="U1335_000581"
     CDS             complement(19829..20524)
                     /locus_tag="U1335_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003037460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5231088.1"
                     /translation="MKKSDLLIIIPAYNEEESILTVVENLETNFPQFDYVIVNDGSKD
                     KTGEICHQKGYPMLDLPVNLGLAGAFQTGLKYAYQAGYQKAIQFDADGQHLPEYIQEL
                     ADQIDLGYDLVIGSRFVNQKKNWSLRMLGNRLIAGAIRLTTGKEVTDPTSGMRMFNAT
                     LIKEFSQNINYGPEPDTVSYLIRNGIKVKEVQVSMQERQGGQSYLTLSRSIQYMLHMF
                     ASILIIQGIRKRN"
BASE COUNT         5876 a         3992 c         4919 g         5740 t
ORIGIN      
        1 aaaaacattc gttatatatg aaattattgg aatttcttga aaaaatgttc gttttttgat
       61 agaatagtgt gtaaaacgaa acttgcaggt gagattcctg ccagaagtag aagaaaggct
      121 gggctggtta gccagttcag agaaagagtg aatatgacat cagtagttgt tgtaggaacc
      181 cagtggggcg acgaaggtaa gggtaaaatt acagacttct tgtctgctaa tgctgaagta
      241 atcgcacgtt atcaaggtgg tgataacgct ggacacacta tcgttatcga tggcactaag
      301 tataaattgc acttgattcc atcaggaatc ttcttcccag aaaagatttc tgttatcggt
      361 aatggtgtgg ttgtcaatcc aaaatctttg gtgaaggaaa tcaactatct ccatgattca
      421 ggtgtgacaa cagataattt gcggatttca gaccgcgcac atgtcatctt gccttatcac
      481 atcaaattgg accagttgca agaagagtct aaaggtgaga acaagattgg tacaaccaac
      541 aagggtatcg gtcctgctta catggacaag gcagcccgtg tcggtatccg tattgcagac
      601 ctcttggaca aggagatttt tgcggagcgt ttgagaacaa acttggctga gaaaaaccgt
      661 ttgtttgaga agatgtatga gtcaactccg attgagtttg acgaaatctt tgaagaatac
      721 tacgcttatg gtcaggaaat caagaaatat gtaacagaca catctgttat tttgaacaat
      781 gcccttgacc aaggcaaacg tgtcttgttt gaaggagcgc aaggtgttat gttggatatt
      841 gaccaaggta cctatccatt cgttacttct tcaaacccag ttgctggtgg tgtgactatc
      901 ggtagcggtg tcggtccaag caagattgac aaggttgttg gtgtatgtaa ggcctacact
      961 agccgtgttg gtgacggacc attcccaact gaattgcacg atgaaatcgg tgaccgcatt
     1021 cgagaaatcg gtaaggaata cggtacgaca actggccgtc cacgccgtgt cggttggttt
     1081 gactcagtgg tgatgcgcca tagccgccgt gtgtcaggta ttaccaactt gtccctcaac
     1141 tcgattgacg tcttgtcagg tcttgagacc ttgaaaatct gcgtggctta tgacttggat
     1201 ggtgagcgta ttgaccacta ccctgcaagt ttggagcaac tcaaacgttg caaaccaatc
     1261 tacgaagaaa tgccaggttg gtctgaagac atcacaggtg tacgtagcct ggatgaattg
     1321 ccagaagcgg ctcgcaacta tgttcgtcgt atcagcgaat tggtaggcgt tcgtatctca
     1381 accttctcag taggacctgg tcgtgaacag accaacatcc ttgagagtgt atggagctca
     1441 aaatagtgtg tgaagactga acaaaagttc ggtctttttc tgtttggtcg aactttgctt
     1501 tcttgtccag aatttgatat aatcatgctt atcaaacaat aaaagaggta aacaaatgga
     1561 aggtttattt ttgccgcttg tcatggttgc catgattggt tttatgttct attcgcaacg
     1621 taaacaacaa aaacaacgtc aagaagcact aaatcaaatc aaaaaaggtg atgaaattgt
     1681 gaccattggt gggctatttg gtattgtcga tgaaatcgat gataaaaagg ttgttctcga
     1741 tgttgatggt gtttacttga catttgaacg tggtgctatt cgtaatcgtg tagcaagttc
     1801 agatactaca tcggcagttg ttgaagaagt ggcagttgaa acgacagaag caactccaga
     1861 atctgcaatt gaagaataag gatgagaaac cgagggaaac cttggttttc tcttgtttta
     1921 gccctgcctg atttttgcta tcctaggtaa aaatatggta taatgaaacg attatacaat
     1981 aaggaaaata ccatgtttaa atttaatttt aaaaagaaag aaagcattga aacagcaatt
     2041 gaagtcccta agcatatcgc tgtgattatg gatggcaatg gccgttgggc gaaaaagcgg
     2101 atgcagccac gtattatggg gcataaggct ggtatggatg cacttcaaaa ggttaccaag
     2161 acggcttctg atttgggagt aaaggtgtta actgtctatg ccttttctac agaaaactgg
     2221 tctcgaccgg aaaaagaagt gaagtttatc atgaatctac ctgtggagtt ttatgataag
     2281 tatgttcctg aactccatgc caataatgtc aaaattcaga tgattggtga ccattccaaa
     2341 cttcctgttc cgactctcaa tgcgctttat aaagccgaac aaaagacaaa gagtaacact
     2401 ggtttgattc tcaatttcgc tcttaactat ggcggtcgtg atgaggtgac tcgcgcagtc
     2461 aaggctattg cgcaagatgt cttggatgcc aagttcaatc ctggagatat tgatgagaaa
     2521 ttaatagcgg attacctcta tacaggaacc ttatcaccaa cgttacgcga tcccgatcta
     2581 gttatccgta caagtggtga acttcgtctt agcaacttcc tgccgtggca aacagcctac
     2641 agcgagctgt actttacaga tattgcttgg cctgattttg atggagaagc acttaaatta
     2701 gcgattaaag aatacaaccg tcgccacaga cgttttggcg gtgtataagg agaaggtatg
     2761 acaaacgatt tacagaaacg agtgatattt ggtggcgttg ctctagctat tttcattccc
     2821 tttttgttgg ctggtgggat ggcatttcaa ttttttgtag gcctgttagc tatcattgct
     2881 acggctgaat tgattaaaat gcaccgccta gcacctaatt ctatcgaggg tgtcttagct
     2941 atgttggcca gtttagtctt ggctcttccg ctccagaatt atctgacatt tttaccgacg
     3001 gatggaaatt acacagccta cgccattgta gtatttttac tgcttggttc gatggttttt
     3061 aatatcggtc attacaacta ttcagatgta gtctttccaa ttgcatcaag tttctatgtt
     3121 ggtatcggct ttcatagttt gatactggct cgtatggctg ggctcaataa agtcttcttt
     3181 gccctctgtt tagtctgggc aacagatatt ggtgcctacc taatcggtcg tcagattggt
     3241 cggagaaaat tattgccgaa ggtttcaccg aataaaacgg ttgaaggctt tgtaggcggt
     3301 attctttctg cggtggtagt tgctatcatt ttcttgattg tcgataagtc cttgttggcg
     3361 ggctattcat ttggcatgat gttgttgttg gttgtgattt tctcgatatt ctcacaattc
     3421 ggagacttag tagaaagtgc tattaaacgc cattttggtg tgaaggattc tggaaaaatt
     3481 attccaggac acggtgggat cctggatcgt tttgacggta tgatttttgt ctttccaatc
     3541 atgcacttct ttggattatt ttaaggaggt actatgaagg gaattttagc atttatattt
     3601 atatttggtg tgattgtggt tgtccatgaa tttggtcatt tctactttgc caagaaagct
     3661 ggtatccttg tgagggaatt tgcgattggg atgggtccca aaattttcgc tcatacaggt
     3721 aaggatggga cactttacac catccgtatc cttcccctag gtggctatgt tcgaatggct
     3781 ggatggggtg aagataagac agagattaag acaggtagtc ctgccagcct cagcctgaat
     3841 gaagctggtg ttgtgacgcg gattaattta tctggtaagc aactggatag tctcagtttg
     3901 ccaatgaatg taaccagttt tgacttcgag gaaaaattgg aaatcacagg cttggtcttg
     3961 gaagaaagca agacctataa ggttgatcac gatgccacga ttgtagagga agatggaaca
     4021 gaagttcgga ttgctccact tgatgttcag tatcaaaatg cgactgtctg ggggaagttg
     4081 ataaccaact ttgctggtcc catgaataac tttattttag gaattctaat atttattctt
     4141 ttgttcttca tgcaaggcgg ggttgccaac ccatcaagca atgcagtaag tattactgaa
     4201 ggtggtgctt tgcaggctgc gggtgttgtc acaggggaca agattctttc ggtcaatggg
     4261 aacgcgacag acagctacac agaagttgca acgattatta gcaaagcagc gacagatgca
     4321 acaacagccc caagctttga tttggttgtt gagcatgatg ggaaaaaccg tcatgtctcc
     4381 gttactgctg aacaagtgga tggggcttat cgaattggta tctcaccgat tttgaaaact
     4441 ggtttcgttg ataaaattgt cggtggtttc caagaagcgg gagcgacagc tcttagggtt
     4501 gtgacagctt tgaagaatct aattgcaaac tttgatgtta agcagttggg gggaccggtt
     4561 gctatttata aagtaagttc tcaagcggct gaatttggtt tggtttctgt attggggcta
     4621 atggctgcgc tctccattaa ccttggaatc ttcaatttga ttccaattcc agccttggat
     4681 ggtggtaaga ttgttatgaa tattctggaa gccattcgca gaaaaccact caaaccagag
     4741 acggaatctt atatcactct agcaggtgta gccgttatgg tggttcttat gatagtagtc
     4801 acttggaatg atattataag agtcttcttc taagataatt tgaaatttat gaaagaattg
     4861 aatgcgtgct aaacgcagga tgttctgaaa aaatacgaaa ggaattgact gcgggctgag
     4921 acctgtgcat tcctgataaa caaaagatga aaggaattga ctgcgtgcta aacgcaggat
     4981 gttctgaaaa atacgaaaaa gaaaggaaca gaacacgggc tgaaacctgt gtcttcctga
     5041 taaacaaaag atgaaaggaa caaaggaggt tcgtaattga actcggtcta aaaactcgga
     5101 aaatagattg agagctacgc ctctggattt ctaatcaagt aaactacgaa aggaattgaa
     5161 tgcgtgctaa acgcaggatg ttctgaaaaa tacgaaagga actgaacacg ggctgaaacc
     5221 tgtgcattcc tgataaacaa aagatgaaag gaattgactg cgtgctaaac gcaggatgtt
     5281 ctgaaaaata cgaaaggaac tgaacacggg ctgaaacctg tgtcttcctg ataaacaaaa
     5341 gatgaaagga attgactgcg tgctaaatgc aggatattct gaaaaatgaa aggaacagag
     5401 agttttcaga tttgaactcg agcgttagcg agggttttga aaagttaatt ctttgtcttc
     5461 taaatcaagt aaactacgaa aggaattgaa cacgggctaa aacctgtgta ttcctgataa
     5521 acaaaagatg aaaggaacaa aggaggtccg taattgaact cggtctaaaa actcggaaaa
     5581 tagataaact gactgatgtg caagcacatt gcgccagttt cctaattttc agtcgttttt
     5641 tacgacctcc gtatcttatt atgaaacagt ctaaaatgat tatccctact ttgcgggaga
     5701 tgccttcgga tgcgtcggtg attagccacg ctttgatgtt acgtgcgggc tatgtccgtc
     5761 agatttctgc tggtatttac agctacttgc ctttggctaa ccgtgtgatt gaaaaagcaa
     5821 aaaacatcat gcgtgaggag tttgataaga ttgatgctat tgaatttttg gcaccagctc
     5881 tcttgtcagc ggacatttgg cgtgagtcag gtcgttacga aacctatggt gatgacctct
     5941 acaagctcaa aaaccgtgaa ggttctgact ttatcttggg tccaacccac gaagaaacgg
     6001 tgacactttt ggcacgtgat gcggtgcagt cctacaaaca gttgccactc aacatctacc
     6061 aaatccagcc aaaataccgt gacgaaaaac gtcctcgtaa cgggcttctc cgtggtcgtg
     6121 agtttatcat gaaagacggt tacagcttcc acgctagcta cgagagcttg gaccagacct
     6181 acgatgacta caaacgtgcc tacgaggcaa tcttcactcg tgcaggattg gagttcaaag
     6241 ctatcatcgg tgacggtggt gccatgggtg gtaaggatag tcaggaattt atggccatta
     6301 caccagaccg tacggatttg gaccgttggg ttgttttgga caagtcagtt gcttcttttg
     6361 aagaaatacc agaggatgtt cttgaagcaa tcaaggaaga actcttggct tggtctgtgt
     6421 ctggtgaaga caccatcgcc tactctagcg aatctggtta ttctgccaac ctagaaatgg
     6481 caactagcga atacaaacca agtacagcag ttgtggttga agaagacttg gttaaagttg
     6541 ctacaccaga tgctaaaacc atcgacgaag ttgctgcctt cttgaatgtt gcggaagaac
     6601 aaaccattaa aaccatgctc tttatagcag atggcgagcc agttgttgcc ctccttgttg
     6661 gcaatgatca agtcaacgat gtcaagttga aaaaccacct tggagcagat ttctttgatg
     6721 tagcaggccc agcggatgca gaaaaagtct tcggtgcagg atttggttcc cttggaccag
     6781 ttggattgcc agaaaatatc aagattattg ctgaccgcaa ggttcaagat gtgaagaatg
     6841 ctgtagttgg tgccaacgaa gatgggttcc actatacagg tgccaatgcg ggtcgtgatt
     6901 tccaagtgac agagtatgtg gatattcgtg aagtcaagga aggtgagcct tctccagacg
     6961 gacacggggt tctcaacttt gctcgtggta tcgagattgg tcacatcttt aaacttggta
     7021 cacgttactc agacagcatg aatgccaaca tcttggatga gaatggtcgt tctatgccga
     7081 ttatcatggg atgctacgga atcggtgtta gccgcctctt gtcagccgtt cttgagcaac
     7141 acgctcgcct ctttgttaac aagacaccaa aaggtgaata ccgttacgct tggggaatca
     7201 acttccctaa agaattggct ccgtttgatg tgcatttgat tccagtcaat gttaaggacg
     7261 aagaagctat ggccttgact cagtctatcg aagcaagttt ggttggtgca ggctatgaag
     7321 tattaactga cgaccgtaat gagcgtatcg gcgttaagtt ttctgatagt gacttgattg
     7381 gcttgccaat ccgtgtgact gtcggtaaga aagctgcgga cggcatcgtc gaagtgaaaa
     7441 tcaaaggcac aggtgatacg gttgaagttc atgtagatca actgcttgaa actcttaata
     7501 ttttgaataa gtaattacaa aaagccgaag tttttatacc tcggctttta aatttgtatt
     7561 tattttttga tttcaagctc ctgtaattgt tcaagaatag tctccaagtc agctccagcc
     7621 tgtaagagag ctgcggcagt atagcaacct tcgacgactg gtacggtttg gataagaatt
     7681 tgtttgtctg taaaatcggc agcaagttcc atgttcattc gggcgctacc taagtcgaaa
     7741 aaggcaagga gggtatcagc agagtttgcc tcaattcgct cttgtacgat ttcaaagcta
     7801 gtaccgatgc taccatcttc tagtccgcca cagtaggtga tgggaatatc ttttgcgact
     7861 tcagatacta ggtcgatgat tccctgggcc aaattttttg aatgggatac gagtaagata
     7921 ccaacctttg tcatagtccc gcctccaaca ttgcttcaaa gagaagtcca gatgagaaag
     7981 agcctggatc aatgtgtcca atagaccttt ccccaacata ggacgcacgg cccttggttg
     8041 cagcaatatc ctttgtccct tgaacagctt tatggataat ttccgttgtc agctggcttt
     8101 ctcttagggt agcaatgacg ggaatccaaa cgtctaccat ggttttctcg cccaattcag
     8161 ccttgccgcg tttttggatc atctccaaac ctgcttgaag cgtgtctgcc aaatcagcgc
     8221 cagcttgact ggctttagta atacccataa aggcagagcc gtagagagga ccagaggcgc
     8281 cgccaacctt gctgaggagt tgcatggcaa ccaccttaaa gatttggtca gcagtctcat
     8341 agtctttctc agatagctcc tgcatgacgg cagccattcc tcgcgccatg ttgcccccgt
     8401 gatctccatc tccgattgga gaatcgagtt cgctcaaata atctttattt tcttgaattt
     8461 ttttgtcgaa tgtctccatc cagagcaatg cttgttttgc atccatagtc tttctcctac
     8521 caagctacca cttcaacagg ggcctgcaaa gcgtcaatcc agcttgggtc ttctagtttg
     8581 attaaggtca atgacagtcc agccatatca atcgatgtca tgtagttacc gattttcttg
     8641 tagtcaacga ccacaccttt tttagccagc aattgagcaa cgtcgttggc aaagacatat
     8701 tgttccatga gaggggttgc gccgagaccg ttgataagga caccatagtg ctcgccatct
     8761 tgaatatcaa agccttctgc caatttctca accaattctt cagccaattt agcagatggt
     8821 tggagttttt ctttcttata gccaggttca ccatggatac cgacaccgta ttcaaattca
     8881 tcctcttcaa ggacgaagcc tggtttgccc acttctggta ccgtagcacc tgatagggct
     8941 aagccgatag tcttgatttg tgggacgaga cggtcagcca gttccttgat ttctgctagg
     9001 gatttgccag ttgttgcagc gtgcccgaga atcttgtgga caaggatggt acctgctaca
     9061 ccacgacggc cttgggtata gaggctattt tccacagcga tgtcatcgtc cacgatgaca
     9121 ctggccactt cgataccctc catttccgcc aattcttgtg ccatttcaaa gttcatgatg
     9181 tcgccagagt agtttttgat gaccatgaag actccagcgc cttcatcagc tgctttgatg
     9241 gcttccaaga tttggtctgg ggttggtgag gtaaatactg cgccacacac agcggcagac
     9301 aacataccct taccgacaaa gcctgcatga gaaggttcgt gaccagagcc ccctcctgag
     9361 atgatgccga ctttaccagt tttttcagcc ttgcggataa tcacatcaaa tccatcgata
     9421 cgatcgacaa gatcttggtg cataaagaca agtcctttta acatttcatc aacgacatgt
     9481 tcgggttgat tgataatttt tttcatgaga aaactccttt gttttttgtt tgcgctttca
     9541 ttttacattg tccaaaagaa aaaaggaagg gacagattgt ccaatgtgtc ccttttgttc
     9601 caaagaaaag catgataggg tataataaag aggaagcgaa aggaagtgac atatgccaac
     9661 ctcgttgatt acaaagaaaa ggattgcaaa ggcttttaaa aaacagctat cccaaaaatc
     9721 ctttgataaa atctcagttg tcgacatcat gcaggaagca gggattcgtc gtcaaacctt
     9781 ttacaaccat tttttagaca agtatgagtt gctggactgg atatttgaga cagaattgca
     9841 ggagcaggta actgacaatc taacctatat tagtggaatc aagcttctgg atgagctctt
     9901 gtactacatc gagagtaacc aatctttcta taggcaactc tttgagatta aggggcaaaa
     9961 tgattttgtc agctatttag aaggctactt tatggttttg atggagaaaa ttatcaacga
    10021 gtaccagctc caggagggta aaatgatttc ccaacaggac aagcattttt tgattctcta
    10081 tcatgctaat gcttggattg gactgataaa ggaaggactg acgcagtcgc cttgtcagat
    10141 tcacggttat tggaagcaaa tggtggctct tgttcgcgag tcgtttttga ttttgtagga
    10201 gttaatgtat ggtgtttatt agaaatagac aggcaacaat tattgaagat tatttggatg
    10261 gtttctgtcg aaccaatcct aaagtgaaga aagtgaaggg gcttccgatt gtgcttcaga
    10321 cagtgcagga tgaccattta gttccaatta tttcaggagg tggttcgggg cacgaaccgg
    10381 cacatattgg atttgtcgga aagggtatgt tgactgctgc agtatatggt gaaatattta
    10441 cgcccccaac cgctgaagaa gtcttggcag ccattcgtgc agtagataag ggcaagggag
    10501 tttttctggt tgtaaaaaac tttgaggcag atttagaaac ctttggtcaa gccatcgcgc
    10561 aagcaagaca agaaggaatc gcggtgaaat atattgtatc ccacgatgat atttctgttg
    10621 acacgaaaaa caacttccgt atgcggcata gggggcttgc agggaccatt ctacttcata
    10681 agatattagg agctgctgcc tttactggct atagcctaga tgaattggaa cagctgggac
    10741 tgtctctggc aacagaaatt gcgaccatcg gttttgcaac caagtcggcc tatttacccg
    10801 atgctgccca gcctttgttt gatttggagg agggacaaat atcttacggc atcggtatcc
    10861 atggagaaga aggctatcgg accgttcgtt tcgaatcctc tgagcagtta gcaaatgaaa
    10921 tcgtcaataa gctcaaactg aaattccgtt ggaaggaagg ggaggagtat gtcctcttgg
    10981 ttaacaatct agggaccctg tctgagctgg agcaaggaat ctttctcaac gatttgtgcc
    11041 aatttctaga gctagaaggt ttacagcttt cctatataaa aacaggtaaa tttatgacca
    11101 gtcttgatat gggaggaatt tctgtcaccc tctgtcgtgt taaggatcga aaatggctgg
    11161 actttttaga ggcgcctaca gaagctgcgg cttggtaggc taccaatttc tatagaaatc
    11221 agatctctca ggaaatgaac ctgagagttt tttcttgctg acttaggaaa aaatacctca
    11281 tttatggtaa aatgtttcta acgaactaca aaggaaataa gtatgtcaga taagtttcaa
    11341 ctcttgctac aacaaatcgg aatgcctctt gatgcacgac aatcaggggc tttttcgact
    11401 gcaacgattg agaaagtagt cttgcacaag gtcagcaaac tttgggaatt taccttccgt
    11461 tttgaaaccc ccttgccgct catggactat caactcttca aggctcgttt ggcgacggag
    11521 tttgaaaagg tgggcaataa gattcaattt tctattgtca gcgatgcgga ggcttttgaa
    11581 gctggtttgg tagaagcata ttatccagaa gcttttacgg aagatttgtg ccagagtgca
    11641 ggcttcaagg ctctttttca gccattagag gtggcttata gagatggtgt tttgtggata
    11701 aagggacctg aaaccattga caccgttcat tttcggaaga atcatctgcc aaatcttgtg
    11761 gagcaataca agcgatttgg ttttggcaat cttgcggtgg acattgaagt ttgccaggag
    11821 atgacgcagc agcaggctgc ggctttccat gcgcaaaatg aagaaattta ccagcaggct
    11881 aatgaagaaa acttggcggc ccttgaacaa ctagctcaaa tggcgccacc accagaggca
    11941 gctcagccat ttgtcccaga atataagaaa aatcgtcctg ccaaggtcaa tatcgaaaag
    12001 gctgagatta cgcctatgat tgaggtggat agcgaggaga atcggattgt ctttgaggga
    12061 ctggtctttg aggtcgagca gaagacgacc aagacggggc gggtcattat caactttaag
    12121 atgactgact atacttcgtc cttcaccttg cagaagtggg ctaagaatga ggaagaggcc
    12181 cagaagtttg atatggtcaa aaagggaaac tggttgcggg tgcgaggcaa tgtggaaacc
    12241 aataatttca ctcgtgattt gactatgaac gtacaggaag tccaagaggt caagaaggaa
    12301 attcgtaaag acctcatgcc tgagggggag aaacgggtcg agtttcatgc ccataccaac
    12361 atgtccacta tggatgccct gcctgccgtt gaggacttgg tggcacgtgc tgcagcctgg
    12421 ggacacaagg cggtggccat tactgaccac ggcaatgtcc agtccttccc ccatggctat
    12481 catgctgccc gtaaagctgg gattaagccg ctcttcggga tggaggctaa tattgtcgag
    12541 gactctgtgc ctattgctta caacgaagca gatgtagtcc tgtctgatgc cacctatgtg
    12601 gtctttgacg tggaaacaac cggtctttct gcggtcaaca atgccctgat tcagattgca
    12661 gcatccaaga tgcacaaggg caatatcatt gcggaatttg atgagtttat cgatccaggt
    12721 catccgctca gtcaatttac aacagatctg acaggaatca cagatgagca tgtgcgtggt
    12781 tctaaacctc tggaacaagt tctgcgtgag tttcaagatt tctgtcaaga ttccgtcatg
    12841 gttgcccaca acgcgacctt tgacgttggc tttatgaatg tcaactatga acgagcaggc
    12901 ttacctatta ttagccagcc tgtcattgat accttggaat ttgctcgtaa cctttacccc
    12961 gactttaagc gtcatggttt aggtcctctc accaagcggt ttggcgttgc tcttgaacac
    13021 caccacatgg ctaactacga tgcggaggcg acagggcgcc tgctcttcat cttcctaaaa
    13081 gatgccttgg agaagcacaa tttgaccaat ctcaaccagc taaacacgga gctgattgcg
    13141 gaggattcct ataagaaggc tcgtgtcaag catgccacgc tctatgtgat taatcaggtt
    13201 ggtttgaaga atatgttcaa actggtctct ctttccaata ccaagtattt tgagggagtt
    13261 tcacgtattc cacggaccgt tctcaatgcc catcgtgaag gtttaatatt gggaacagcc
    13321 tgtcaagagg gcgaggtctt cgatgacttg ctctccaaag ggatagatga agcggttaaa
    13381 acggcagcct attatgattt tatcgaagtt atgccacctg ccctctatgc tcccatgatt
    13441 gccaaggagc agtttaagga catggcagag attgaagaga ctatcaagca gttgattgag
    13501 gtaggacgta gggcaggtct gcctgttctg gcgactggaa atgtccacta cattgaccca
    13561 gaagaggaaa tctatcggga aatcatagtt cgtgccctag gtcaaggggc accgattaac
    13621 tggaccatcg gaaatggtga gaacgctcag ccagcaccac tgccaaaagc ccactttaga
    13681 acgaccagcg agatgttgga cgagtttgca ttcttgggag aaagtttggc ccgtgagatt
    13741 gtcattacca atcccaatgc catgctggat cggtttgaag atgttcaggt ggttaagacc
    13801 gacctctata cgccttatat tgagaaggcc gaggaaacgg ttgcggaatt gacctatcag
    13861 aaagcctttg aaatttatgg caatcctctt ccagatatta tcgacctgcg gattgaaaag
    13921 gaattaacgt ccattctggg taatggattc gccgtgattt acctggcgtc gcagatgttg
    13981 gtgcaccgtt ccaatgagcg gggctacctg gtgggttcac gggggtctgt cggctccagt
    14041 ttcgttgcaa ccatgatcgg gattaccgaa gtaaacccta tgcctcctca ctatgtctgt
    14101 ccaaattgtc aacacagtga atttatcaca gatggttcct atggttcagg ttttgacctg
    14161 ccagacaagg attgtgaaaa gtgtgggacc aagtataaaa aagatggaca ggacattcct
    14221 ttcgagacct tccttggttt cgatggagac aaggttcccg atattgactt gaacttctca
    14281 ggggatgacc aaccgtctgc ccatttggat gttcgggata ttttcggtga agaaaatgcc
    14341 ttccgtgcag gaacggttgg tacggtagct gctaagactg cttatggttt tgtccgaggc
    14401 tatgagcggg attatggcaa attctaccgt gatgtagaag tagaacgctt ggctgctggt
    14461 gcggctggtg tcaaacggac gactggtcag cacccagggg gaattatcgt attccctgac
    14521 tacatggatg tctatgactt tacccctgtt cagtatcctg ccgatgatgt gacagccagc
    14581 tggcagacca cccactttaa cttccacgat attgatgaaa acgtcttgaa actcgatatt
    14641 ctgggacacg atgatccaac catggttcgg aagttgcagg acttgtcagg catcgatccg
    14701 cagaccattc ctgccgatga taagggggtt atggctctct tctctggtac ggaaattctg
    14761 ggagttactc cagagcagat tgggacgccg acaggtatgt tgggtattcc tgaattcgga
    14821 accaactttg tacgggggat ggtggaggaa actaaaccga ccacctttgc agaactcttg
    14881 cagctgtctg gtctatccca cggtacagac gtatggttgg gcaatgctca ggacttgatt
    14941 aaggcaggaa ttgccgatct atctacggtt atcggttgtc gggatgatat catggtttat
    15001 ctcatgcacg caggtttacc gcctaagatg gcctttaaca tcatggagcg ggtgcggaag
    15061 ggcatgtggc tcaagatttc cgaggaagag cgaaatggct acattcaagc catgaaggat
    15121 aacaaggtgc cagactggta catcgagtcc tgtgggaaaa tcaagtacat gttccctaaa
    15181 gcccatgcgg ctgcttacgt tatgatggct ttacgggtag cctatttcaa ggttcatcac
    15241 ccaatctact attactgtgc ttatttctct attcgggcca aggcctttga tttggcgacc
    15301 atgtccggtg gcttggaacg agttaaggcc aagatggaag agattgccct caagaagaaa
    15361 aataatgaag cttcaaacgt tgagcaggat ctctatacca cacttgaatt ggtaaatgaa
    15421 atgctggaac gtggcttcaa gttcgggaaa ttggatcttt acaagtccca tgcgaccgac
    15481 ttcttaattg aagacgacac tcttattcca ccatttgttg ccatggatgg ccttggggag
    15541 aacgttgcta agcagcttgt ggcggcgcgg gctgaaggag agtttctctc caagacggag
    15601 cttcgtaagc gtggtggatt gtcaggtaca ctggtcgaaa aaatggatga aatgggtatt
    15661 ctcggtaaaa tgccagagga taaccagctc agtctctttg atgatttgtt ttaagcaaga
    15721 agaaaaagac tgtttaggtg attgtttctc tgcactagtc tagttgtttg attcctgttg
    15781 aactctaatt ctcttataga atgtgatgta agctaaacca tatctgtttg gttaagtttt
    15841 ccggttatag aactagaaaa cttcaaatga gagaaaaaag caaaagcatt cgaacagttg
    15901 aactcagtgt ttattgactg cacattttaa ccataacaaa acactcctgt ttctagtttt
    15961 gtactagagt tcaacaggag tgtttttctt atcttaatag gtcgataaga cagtaaatag
    16021 caagaccatg gttgctatga taatactgcc ttttaagatg aattcatttg agaggcgagg
    16081 aggggtgaat gttgggaggg gccaagaggc tagggttaag aggaagagag ggaatactcc
    16141 taggtagtat cgtccttgaa ccccatcaac actacctttt cctatttttg tccaagtcag
    16201 atacatgacg agaataatac cacagatgat ggagaaggca atcactaaac taccgatacg
    16261 actgattaat tttgtctttt cacgtcctaa attacttgcg acaacagtca aatagaaaac
    16321 aaaaatcgga atgagtgttt cgcgcatagg cagatcgaga aaaccaaaat aaaagagaga
    16381 aacaagtctg tgtggtgata ataagaactc ttttgataag gctaggattg cccgtgaagg
    16441 atgtttaaag aaaaattgga tttgtccgct taggccaact ccttttagaa ctgtagttga
    16501 agtgatttgt tggtagcctg caaaccaaac agcagctact ccaaagacaa gcacggatgc
    16561 acccagaaga gataaatagg gtcttggaat agcaaaacgt tctttgggga tgaaaaatag
    16621 cagagcgatc aagagaatat atggtaattt caaagttgct aataagcaac agagtgaggt
    16681 gtagagaagg atatcctttg tatttatctt attttgccga gtgaggtagt gaataaagag
    16741 gccgattgca atatagataa tacccagagc tatcccatct tggttataag aggctgcaag
    16801 ggagaggttc ataggcataa gggtaacaag catcataagc tgtttgtaag aaccactgag
    16861 tttgatagct atgtaagcga gaacggcata acagatagcg ttgaaaattc ttcctagata
    16921 gtaagttacc ccaacactta ggcccaatgt tcgaccgata agaataccgg tcacttgtgg
    16981 gaggtatccg ataaaccaat aggcgttagt agtacgaaaa tcagcaaggc cattaaaggg
    17041 cacctctttt ttgctcgagg gtttattaaa agcatcgact gcaagaggtg gcatggtata
    17101 atcgtcgata atagcaaaat aatcttcaga aataaccagg tgttcaggtt tgttgtctaa
    17161 attaatatct ccctgtgcga tatgcatgga gcgagataaa tgcacatact catcgggagt
    17221 gtaaagaaca ggggtaacaa tagcaaaaac gactccagat actaatagag caatgaagga
    17281 agcgatttct ttttttgtag gcaataatgt tagtaatacc atcatacaga ttgctattgg
    17341 atagatagca aaagacgcgt gataattgcg taggtagaga gcatagacca tgtaacaagc
    17401 tagaagacag accagtagat accacttgtt ttggtttaat ttcgtaagca caaagtaacc
    17461 tcctagtaat ttgaatcttg tcctttgata taaatgcggt taagtatacg tgcgatcggt
    17521 ttaggccaaa aaagttcaaa gagcattaaa tcttccttgg ttcgagtatt gtctgcaatg
    17581 gtatgtgacg tctcagattc ttcatggatg cggtgacaca tgagagcctg tggaacgaaa
    17641 ataaagtcac catcgtactg attaatctga taccaagcat accaatccaa attggtccgc
    17701 atggtttcat cgaaacgaaa atctgctaat ctagtccgat tgtaagttac ggctggacaa
    17761 caaatggcat tgcccaaacc gagccaaaaa tgacgccaga tttttgaagt tggaaaaagt
    17821 gttagtcctt tgagcaagaa tctcttgata cgtaaattgg tattgctgtg gataactagt
    17881 ccgtttttct tttcaaaata atctgtgaaa gcgattaggc tattaggatg agcttgtaat
    17941 ttagtgagaa tctcttgtgt gtaggtcggt tggtacaaat catcttgatg tgcgatggtg
    18001 acataaggtg tttgaacaac agaaagagct tgattccagt ctttaccaat tcctccccct
    18061 gttcctacat gtataggaat agcatactgt tggcagatat tgtgaatatg ttggctaggt
    18121 gtagatgtat aaagagcaat atctgtcgga agagtttgtg ccagtagcga ttggatacag
    18181 tcctccaaat agggactatc tccgtaggca caaattataa aactgtgctg gttttgtaag
    18241 ttagacatgt ttttttcctt tgtggtagta ataaaaagtc aggaggctca tcaagagtag
    18301 atagacgaac attgtgatga gaaaactgat agcagcaccc caaagctggt agctagtaat
    18361 caacggtcca gtaagccatt tactaagagc aaataggcag agataaatca gtaccatgac
    18421 ctgctgtttt cgaaagattg tcaggatatt ctcgcaaaca atagatagtg aatagagaat
    18481 acctgcgaag actaagatag ccaaggtggc agcatatgag ctgagattta ctccgtaaag
    18541 caggctcaag acaggcacgc caatccagta agccattaag ctagccaaac ttccgattaa
    18601 aaaaaggctg aggaagagtc tgcggcaaat ggaggcaaac tcgattgtat tattctggtg
    18661 ccacagtttt gccaattcgg taattaaggg gcgcacaatt aagacgcaga gactcataaa
    18721 aaaaacaggc atgaataaaa tgctgaaatc acgttgcata ccggctgtta ggctcccatt
    18781 ggctaagccc tgttcaataa cctgttttgg ctcgttaaaa atataggtta ataagaaccc
    18841 gttgataaac aatggaagac aggcttttaa aatcccccag gcttccttgt gtagtaaagg
    18901 ggagaaaaag ttggttcctc taagagtaga gaaatttgca cctttcttga catcaagtag
    18961 aaggacaacc agtccgttcc agatggccaa tcctgctaag gaaaaagcaa gattttgact
    19021 gatagctaag caaccagcca gtaatagtat gcttgtagta taacgaaagg tcatattttg
    19081 gccagcaata tccaatctcc cttcctgttg gaagagccct tggtagaggt cagagacaac
    19141 gtcgctaatc cgataagcca atagtagaaa tactagcaga tagctagatt gataagaagt
    19201 tagctgtagg aatggtaata tactaacggt cataaagagt agcgaatagc atcgtgctaa
    19261 aaagtaagct ggaaaagaat gagttccttt gatatcggtt ccttgataat tgcgtacctg
    19321 aaatagcccg attacgaccc aaaggttgcc aatggcatag gccatgctaa aatcgtcagc
    19381 agtctgagca gttgaaaatc gtgaaacaat taagagataa aagacggaca cgcctgctgc
    19441 aactaagtta cctagtagat tccaaaaata gatgttcttt tgtatcttat tcatcgtgtt
    19501 ttaatcgttc aatagcaagg gtttgaacca attccttgac cttgttatct agtttagaaa
    19561 ggcgaatagt tagctggaat tggtggataa tgagcaaaaa gatgataaat agaaagacaa
    19621 agttaactgg aagggaaatt cctaataaat ttgtcactgt ctccgctact tttgggaaga
    19681 gactgaggaa aaggagtaat ccagaaaaga agagccagaa aagggaatcc tgaatctgaa
    19741 cttgtgattt ctgaattcgt cgcaatataa gaccagcagt gatgagagac gtgaggataa
    19801 gaattacttg aaaggttgga gtcatagatt agtttcgctt tctaatgcct tggataatga
    19861 gaatagaggc aaacatgtgt aacatatatt ggatagaccg agataaggtc agatagcttt
    19921 ggccgccttg tctctcctgc atgcttacct gtacttcttt taccttgatg ccgtttctaa
    19981 tcagatagga gacggtatct ggttcaggac cataattgat gttttgagaa aattctttga
    20041 tgagagttgc attaaacatg cgcatgccag aggtagggtc ggtcacttct ttaccagtcg
    20101 ttaaacgaat ggccccagca attagacgat tccctagcat tctcagtgac cagtttttct
    20161 tttggttgac gaaacgagaa ccgattacca ggtcataccc gaggtctatt tggtctgcaa
    20221 gttcctgtat atactcgggt aaatgttgcc catctgcatc aaactggatt gctttttgat
    20281 agcctgcttg ataggcgtat tttagacctg tttgaaaagc acctgctaat ccgagattga
    20341 caggtaaatc gagcataggg tacccttttt gatgacaaat ctccccggtt ttatctttag
    20401 agccatcgtt gacaatgaca tagtcaaact gagggaagtt tgtttccaga ttttcaacaa
    20461 cagttaaaat ggactcttct tcattataag cggggattat aatgagtaaa tcagattttt
    20521 tcacaca
//
LOCUS       DASGAC010000021        20517 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.021, whole genome shotgun sequence.
ACCESSION   DASGAC010000021 DASGAC010000000
VERSION     DASGAC010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20517)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20517)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20517
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.021"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..754
                     /locus_tag="U1335_000582"
     CDS             <1..754
                     /locus_tag="U1335_000582"
                     /inference="COORDINATES: protein motif:HMM:NF021640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nucleotide-binding protein"
                     /protein_id="HEM5231089.1"
                     /translation="MAQEKHTFTYLDEYLIREYFDLKLSKEHLHPTYPLKLKVRTKEI
                     VIQAETKGDKRTIHVENDTDESLLKKLRELDDTIKENQLEIFVVYGRGNNGSERDELE
                     ELLEKWNCKPIYLDKQKNGGATLIEKLESNINSREVGIVLATPDDIGYHDSVEGRLNP
                     KYRLRQNVLLELGWLIGKFGRQNIILLQRNHRDYPIEIASDIYGVVYVDFKDSVNEIQ
                     TKQALAKELFPILVGKDSHLKGNKIFSNWRLT"
     gene            751..3474
                     /locus_tag="U1335_000583"
     CDS             751..3474
                     /locus_tag="U1335_000583"
                     /inference="COORDINATES: protein motif:HMM:TIGR04320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEC10/PgrA surface exclusion domain-containing
                     protein"
                     /protein_id="HEM5231090.1"
                     /translation="MKNKALKTLTLTTVAATALVTQQAYADEVVEVATSSSSNTANVE
                     ASSSVTAEQVAAAKATADAAANPVAYQQDSLASAEAAAKTAQTNLDQAEQALTSAQDL
                     ATNATEETIAAAEKAIVSAEQTVVEAQNQVTSAEQATAIAQEQVDKAQAEANKAKTDA
                     DLAKSQADASKAELEALQNSQEGQAISQAQADLKAAQEDVANKTTAVTTAEQNLEQAQ
                     AADTKLETDRASANAVLAEQTQKVKTAQALVTEKEVDLETAKQNQVAANEKVEAVKPK
                     ATYKFSINLPDYLRDAYVNLVKTDFSKDSIDAATQAEKRYYGDVRSFDERDKLSYATI
                     ESTDPTLYDVENLDIEQLLLLNQFAIDYTNAYRQALGIDKKIVGNEWLIEVADVRARL
                     YEEKYPEGFYGHDGEIIAAANDEVFGEGSLMATGSEILAYPNISSSGGLYEQNTNYYT
                     MSEILHVIAQGINGFMLNDSGSAYGHFAQLMTYEAMGFDLYYTDDYFEEYQSGVGNFV
                     VVGAGTATNDIKDFKRYNDWDVIEETDSEITLGDPKRKFINLEGEVAYRRSVNLPKNN
                     YKVYDRFVERNISSQDYSAYESALKDQNAAQSSYNNVQAEYEKVAKELAKAQNDLSSA
                     QSTYNELVNTALQTPEAKKALELAQTDLASAQEVLVTAQNQWQVADVKAKALATKIAK
                     AQADYDNLLATATTLKAQADDRKAEVATAQSVLTQAQNKLTEARQAVERAEQGVVSAK
                     TNLSTLKEAQVTLAKAQVAYAVAQKNAQAANQSLSETRAKLADLKLVYEKAYTEYLDL
                     KKLYDLQTMVTPQPTVDSDNSKENLGQGDSSQNDVKTLSNTKVKLATNKDLSKTALNE
                     ISIAAATTEHKFAKVQTLPATGEKETSLLSLLGLTALATGLGLAARRRQNG"
     gene            3668..3976
                     /gene="rpsJ"
                     /locus_tag="U1335_000584"
     CDS             3668..3976
                     /gene="rpsJ"
                     /locus_tag="U1335_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003046044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEM5231091.1"
                     /translation="MANKKIRIRLKAYEHRTLDTAAAKIVETATRTGAQVAGPVPLPT
                     ERSLYTIIRATHKYKDSREQFEMRTHKRLIDIINPTQKTVDALMKLDLPSGVNVEIKL
                     "
     gene            4190..4816
                     /gene="rplC"
                     /locus_tag="U1335_000585"
     CDS             4190..4816
                     /gene="rplC"
                     /locus_tag="U1335_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002986659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEM5231092.1"
                     /translation="MTKGILGKKVGMTQIFTESGEFIPVTVIEATPNVVLQVKTVETD
                     GYAAVQVGFDDKREVLSNKPAKGHVAKANTAPKRFIREFKNIEGLEVGQEITVETFAA
                     GDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKGKNLAG
                     RMGGNRVTIQNLEVVQVVPEKNVILIKGNVPGAKKSLITIKSAVKAGK"
     gene            4841..5464
                     /gene="rplD"
                     /locus_tag="U1335_000586"
     CDS             4841..5464
                     /gene="rplD"
                     /locus_tag="U1335_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012677212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEM5231093.1"
                     /translation="MANVTLFDQTGKQAGEVVLNDAIFGIEPNQAVVFDVIISQRASL
                     RQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLP
                     QKVRRLALKSVYSEKVAENKFVAVNSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGN
                     EFAALSARNIPGVKVATATTASVLDIANADKLLVTQAAISKIEEVLA"
     gene            5464..5763
                     /locus_tag="U1335_000587"
     CDS             5464..5763
                     /locus_tag="U1335_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007518994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEM5231094.1"
                     /translation="MNLYDVIKKPVITESSMGQLEAGKYVFEVDTRAHKLLIKQAVEA
                     AFEGVKVANVNTINVKPKTKRVGRYVGRTNKVKKAIITLTADSKAIELFATADAE"
     gene            5781..6614
                     /gene="rplB"
                     /locus_tag="U1335_000588"
     CDS             5781..6614
                     /gene="rplB"
                     /locus_tag="U1335_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019790357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEM5231095.1"
                     /translation="MGIKVYKPTTNGRRNMTSLDFAEITTSTPEKSLLVALKSKAGRN
                     NNGRITVRHQGGGHKRFYRLIDFKRNKDGVEAIVKTIEYDPNRSANIALVHYTDGVKA
                     YIIAPKGLEVGQRIVSGPEADIKVGNALPLANIPVGTVVHNIELKPGRGGELVRAAGA
                     SAQVLGQEGKYVLVRLQSGEVRMILGTCRATVGTVGNEQHGLVNLGKAGRSRWKGIRP
                     TVRGSVMNPNDHPHGGGEGKAPVGRKAPSTPWGKPALGLKTRNKKAKSDKLIVRRRNQ
                     K"
     gene            6866..7147
                     /gene="rpsS"
                     /locus_tag="U1335_000589"
     CDS             6866..7147
                     /gene="rpsS"
                     /locus_tag="U1335_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000533767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEM5231096.1"
                     /translation="MGRSLKKGPFVDEHLMKKVEAQANDEKKKVIKTWSRRSTIFPSF
                     IGYTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYKGHAADDKKTRRK"
     gene            7165..7509
                     /gene="rplV"
                     /locus_tag="U1335_000590"
     CDS             7165..7509
                     /gene="rplV"
                     /locus_tag="U1335_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018371349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEM5231097.1"
                     /translation="MAEITSAKATARTVRVSPRKSRLVLDNIRGKSVADAIAILKFTP
                     NKAAGIIEGVLNSAIANAENNFGLEKANLVVSEAFANEGPTLKRFRPRAKGSASPINK
                     RTAHITVVVAEK"
     gene            7522..8175
                     /gene="rpsC"
                     /locus_tag="U1335_000591"
     CDS             7522..8175
                     /gene="rpsC"
                     /locus_tag="U1335_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000529931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEM5231098.1"
                     /translation="MGQKVHPIGMRVGIIRDWDAKWYAEKEYADYLHEDLAIRNFIKK
                     ELADASTSTIEIERAVNKVIVSIHTAKPGMVIGKAGSNVDALRAQLNKLTGKQVHINI
                     IEIKQPDLDAHLVGESIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSGRLNGAD
                     IARAEGYSEGTVPLHTLRADIDYAWEEALTTYGKLGVKVWIYRGEVLPARKNTKGGK"
     gene            8179..8592
                     /gene="rplP"
                     /locus_tag="U1335_000592"
     CDS             8179..8592
                     /gene="rplP"
                     /locus_tag="U1335_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003029477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEM5231099.1"
                     /translation="MLVPKRVKHRREFRGKMRGEAKGGKQVDFGQYGLQATTSSWITN
                     RQIEAARIAMTRYMKRGGKVWIKIFPHKSYTAKAIGVRMGSGKGAPEGWVAPVKRGKV
                     MFEVAGVSEEIAREAFRLAGHKLPVKVKFVKREAE"
     gene            8602..8808
                     /locus_tag="U1335_000593"
     CDS             8602..8808
                     /locus_tag="U1335_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006739716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEM5231100.1"
                     /translation="MKLQEIKDFVKELRGLSQEELAKKENELKKELFELRFQAAAGQL
                     EQTARLNEVKKQIARIKTVQSETK"
     gene            8832..9092
                     /gene="rpsQ"
                     /locus_tag="U1335_000594"
     CDS             8832..9092
                     /gene="rpsQ"
                     /locus_tag="U1335_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006738952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEM5231101.1"
                     /translation="MERNNRKVLVGRVVSDKMDKTITVVVETKRNHPVYGKRINYSKK
                     YKAHDENNVAKEGDIVRIMETRPLSATKRFRLVEVVEEAVII"
     gene            9117..9485
                     /gene="rplN"
                     /locus_tag="U1335_000595"
     CDS             9117..9485
                     /gene="rplN"
                     /locus_tag="U1335_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012727667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEM5231102.1"
                     /translation="MIQTETRLKVADNSGAREILTIKVLGGSGRKFANIGDIIVASVK
                     QATPGGAVKKGDVVKAVIVRTKTGARRADGSYIKFDENAAVIIREDKTPRGTRIFGPV
                     ARELRDGGFMKIVSLAPEVL"
     gene            9566..9871
                     /gene="rplX"
                     /locus_tag="U1335_000596"
     CDS             9566..9871
                     /gene="rplX"
                     /locus_tag="U1335_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEM5231103.1"
                     /translation="MFVKKGDKVRVIAGKDKGVEAVVVTALPKVNKVIVEGVNIVKKH
                     QKPNSENPQGAIVEKEAPIHVSNVQVLDKNGVAGRVGYKFVDGKKVRYNKKSGEVLD"
     gene            9895..10437
                     /gene="rplE"
                     /locus_tag="U1335_000597"
     CDS             9895..10437
                     /gene="rplE"
                     /locus_tag="U1335_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEM5231104.1"
                     /translation="MANRLKEKYLNEVVPALTEQFNYSSVMAVPKVDKIVLNMGVGDA
                     VSNAKNLEKAAQELALISGQKPLITKAKKSIAGFRLREGVAIGAKVTLRGERMYEFLD
                     KLVTVSLPRVRDFHGVPTKSFDGRGNYTLGVKEQLIFPEINFDDVDKTRGMDIVIVTT
                     ANTDEESRALLTGLGMPFAK"
     gene            10452..10637
                     /locus_tag="U1335_000598"
     CDS             10452..10637
                     /locus_tag="U1335_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011245027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEM5231105.1"
                     /translation="MAKKSMIAKNKRPAKFSTQAYTRCEKCGRPHSVYRKFKLCRVCF
                     RDLAYLGQIPGVTKASW"
     gene            10827..11225
                     /gene="rpsH"
                     /locus_tag="U1335_000599"
     CDS             10827..11225
                     /gene="rpsH"
                     /locus_tag="U1335_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009754342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEM5231106.1"
                     /translation="MVMTDPIADFLTRIRNANQAKHEVLEVPASNIKKGIATILKNEG
                     FVKNVEFIEDDKQGIIRVFLKYGPNGEKVITNLKRVSKPGLRVYSKREDIPKVLNGLG
                     IAIISTSEGLLTDKQARQKNVGGEVIAYVW"
     gene            11508..12044
                     /gene="rplF"
                     /locus_tag="U1335_000600"
     CDS             11508..12044
                     /gene="rplF"
                     /locus_tag="U1335_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016399261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEM5231107.1"
                     /translation="MSRIGNKVITLPAGVELAQNNGVVTVKGPKGELTREFPTAIEIR
                     VEGAEVTLHRPNDSKEMKTIHGTSRANLNNMVVGVSEGFKKELEMRGVGYRAQLAGNK
                     LTLAVGKSHPDEVVAPEGITFEVPTPTQIVVSGINKEVVGQTAAYIRSLRAPEPYKGK
                     GIRYVGEFVRRKEGKTGK"
     gene            12133..12489
                     /gene="rplR"
                     /locus_tag="U1335_000601"
     CDS             12133..12489
                     /gene="rplR"
                     /locus_tag="U1335_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEM5231108.1"
                     /translation="MISKPDKNKIRQKRHRRVRGKISGTAARPRLNIFRSNTGIYAQV
                     IDDVAGVTLASASTLDKEVSKGTKTEQAVVVGKLVAERAVAKGISEVVFDRGGYLYHG
                     RVKALAESARENGLKF"
     gene            12508..13002
                     /gene="rpsE"
                     /locus_tag="U1335_000602"
     CDS             12508..13002
                     /gene="rpsE"
                     /locus_tag="U1335_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEM5231109.1"
                     /translation="MAFKDNAVEIEERVVAINRVTKVVKGGRRLRFAALVVVGDRNGR
                     VGFGTGKAQEVPEAIRKAVESAKKNMIEVPMVGTTIPHEVRSEFGGARVLLKPASEGS
                     GVAAGGATRAVIELAGIADVTSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGISV
                     SDLA"
     gene            13017..13199
                     /gene="rpmD"
                     /locus_tag="U1335_000603"
     CDS             13017..13199
                     /gene="rpmD"
                     /locus_tag="U1335_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HEM5231110.1"
                     /translation="MAQIKITLTKSPIGRKPEQRKTVVALGLGKLNSSVVKEDNPAIL
                     GMVNAISHLVTVEEVK"
     gene            13335..13775
                     /gene="rplO"
                     /locus_tag="U1335_000604"
     CDS             13335..13775
                     /gene="rplO"
                     /locus_tag="U1335_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004225266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEM5231111.1"
                     /translation="MKLHELQPATGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGG
                     GVRPGFEGGQTPLFRRLPKRGFTNINAKEYAIVNLDQLNAFEDGAEVTPVVLIEAGIV
                     KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITSKGGSVEVI"
     gene            13789..15099
                     /gene="secY"
                     /locus_tag="U1335_000605"
     CDS             13789..15099
                     /gene="secY"
                     /locus_tag="U1335_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEM5231112.1"
                     /translation="MFFKLLKDALKVKLVRSKILFTIFILFVFRVGTHITVPGVNAKS
                     LEALSNVPFLNMLSLVSGNAMRNFSVFALGVSPYITASIIVQLLQMDILPKFVEWGKQ
                     GEVGRRKLNQATRYISLVLAFVQSIGITAGFNALSGAKLTNMPLNWQTYLLIGSILTT
                     GSIIVTWLGEQISEKGYGNGTSMIIFAGIISSLPGTFHEIYIDRFVNIESSRLGESAI
                     FVAALVVLIFFVVYFTTFVQQAEYKLPIQYTKRAQGAPSSSYLPLKLNPSGVIPVIFA
                     GSITAVPTSLIQYFASQNKSAGWLLTVQEYFDYSTAKGMIVYAGLIIAFTFFYTFVQV
                     NPEKTAESLQKSAAYIHGVRPGNGTEQFLSKLLTRLAVIGALFLSFVALLPILAQNLF
                     GLSSSIAFLGTSLIIVISTSIEGIKQLEGYLLKRKYVGFLEITE"
     gene            15193..15834
                     /locus_tag="U1335_000606"
     CDS             15193..15834
                     /locus_tag="U1335_000606"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001050429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEM5231113.1"
                     /translation="MNLLIMGLPGAGKGTQAAKIVEKFNVAHISTGDMFRAAMANQTE
                     MGILAKSYIDKGDLVPDEVSNGIVKERLVQDDIKEKGFLLDGYPRTIEQAHALDENLA
                     DLGIELQGVINIEIDPSKLVERLSGRIIHKETGETFHKVFNPPVGDYKEEDFYQREDD
                     KPESVKRRLEVNIAQGQPIIDHYRAKGLVHDIEGDQDIDLVFQAIDTVLSKLQ"
     gene            15956..16174
                     /gene="infA"
                     /locus_tag="U1335_000607"
     CDS             15956..16174
                     /gene="infA"
                     /locus_tag="U1335_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003130554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEM5231114.1"
                     /translation="MAKEDVIEIEGKVVDTMPNAMFTVELENGHQVLATVSGKIRKNY
                     IRILVGDRVTVELSPYDLTRGRITYRFK"
     gene            16199..16315
                     /gene="rpmJ"
                     /locus_tag="U1335_000608"
     CDS             16199..16315
                     /gene="rpmJ"
                     /locus_tag="U1335_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013773089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEM5231115.1"
                     /translation="MKVRPSVKPICEYCKVIRRNGRVMVICPANPKHKQRQG"
     gene            16335..16700
                     /gene="rpsM"
                     /locus_tag="U1335_000609"
     CDS             16335..16700
                     /gene="rpsM"
                     /locus_tag="U1335_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008809894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEM5231116.1"
                     /translation="MARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVR
                     VKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNT
                     KNNARTRKGKAVAIAGKKK"
     gene            16718..17101
                     /gene="rpsK"
                     /locus_tag="U1335_000610"
     CDS             16718..17101
                     /gene="rpsK"
                     /locus_tag="U1335_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003130556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEM5231117.1"
                     /translation="MAKPTRKRRVKKNIESGIAHIHATFNNTIVMITDVHGNAIAWSS
                     AGALGFKGSRKSTPFAAQMASEAAAKSAQEHGLKTVEVTVKGPGSGRESAIRALAAAG
                     LEVTAIRDVTPVPHNGARPPKRRRV"
     gene            17146..18084
                     /locus_tag="U1335_000611"
     CDS             17146..18084
                     /locus_tag="U1335_000611"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEM5231118.1"
                     /translation="MIEFEKPTITKIDENKDYGRFVIEPLERGYGTTLGNSLRRVLLA
                     SLPGAAVTSIKIDGVLHEFDTVPGVREDVMQIILNIKGIAVKSYVEDEKKIELDVVGP
                     AEVTAGDILTDSDIEIVNPDHYLFTIADGAAFKAVLTVNSGRGYVPAEGNKKDDAPVG
                     TLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTLEINTNGTIIPEDALGLSARILMEH
                     LGLFTDLTEVAKSAEVMKEAEVASDDRMLDRTIEELDLSVRSYNCLKRAGINTVFDLT
                     EKTEPEMMKVRNLGRKSLEEVKVKLADLGLGLKKDK"
     gene            18099..18485
                     /gene="rplQ"
                     /locus_tag="U1335_000612"
     CDS             18099..18485
                     /gene="rplQ"
                     /locus_tag="U1335_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEM5231119.1"
                     /translation="MAYRKLGRTSSQRKAMLRDLTTDLLINESIVTTEARAKEIRKTV
                     EKMITLGKRGDLHARRQAAAFVRNEIASENYDEATDKYTSTTALQKLFSEIAPRYAER
                     NGGYTRILKTEPRRGDAAPMAIIELV"
     gene            18684..19979
                     /locus_tag="U1335_000613"
                     /pseudo
     CDS             18684..19979
                     /locus_tag="U1335_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008536077.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcysteine synthetase"
BASE COUNT         6686 a         3913 c         4399 g         5519 t
ORIGIN      
        1 tatggctcaa gaaaagcata cttttactta tctagatgaa tatttaataa gagagtattt
       61 tgacttgaaa ttaagtaaag agcatctaca ccctacctat cctctgaagc tcaaggtccg
      121 tactaaagaa atcgtgattc aagcagagac caagggagac aagcgaacga ttcatgttga
      181 gaatgataca gacgaatctt tattgaaaaa gttgagagaa ttggatgaca ccataaaaga
      241 gaatcaacta gaaatttttg tcgtatatgg tcgtggaaac aatggcagtg aacgtgatga
      301 actggaggag ctactagaaa agtggaattg caaaccaatc tatcttgata agcagaaaaa
      361 tggtggggca actctcattg aaaagttaga aagcaatatc aatagtaggg aagttggaat
      421 agtgttagca acaccagatg atattggcta ccatgactca gttgaaggga gactcaatcc
      481 gaagtatcga ttaagacaga atgtactttt agaattaggg tggctaatcg gtaaatttgg
      541 aagacaaaat attatcttac ttcaaagaaa ccatagagac tatccgatag aaatcgctag
      601 tgacatctat ggtgtggtat atgtcgattt caaagattcg gtgaatgaaa ttcagacgaa
      661 gcaagcatta gccaaagagt tgttcccaat acttgttggc aaagatagtc accttaaagg
      721 aaataaaata tttagtaatt ggagattaac atgaaaaata aagcattaaa aaccttgacc
      781 ttaaccaccg tggcagcgac tgctttggta acccaacagg cttatgctga tgaagtagta
      841 gaagtggcaa cctcctcttc ctcaaatact gctaatgtag aagcctcgtc gtctgtaaca
      901 gcagagcaag tagcagccgc caaagcgacc gcagatgcag cagcaaatcc agtagcctac
      961 cagcaagatt ctttggcgag tgcagaagca gcagctaaga cagctcaaac aaatcttgat
     1021 caagcggaac aggccttgac cagtgcacaa gatttggcga caaatgcaac ggaagaaacg
     1081 attgccgcag cagaaaaagc aatcgttagt gcagaacaaa cagtagtaga ggcacaaaat
     1141 caagtgacta gtgcagagca ggctacggca attgctcaag aacaagtaga caaggctcaa
     1201 gcagaggcca acaaggcgaa gaccgatgct gacttagcaa aatcgcaagc agatgcttct
     1261 aaagcagaat tagaggcact tcaaaatagt caagaaggac aagcaattag tcaagcccaa
     1321 gcagatctca aagctgctca agaggacgtc gccaacaaaa caacagcagt cacaacagca
     1381 gagcagaacc ttgagcaagc tcaagcagcc gatacgaagt tggagactga tagagctagt
     1441 gctaatgcag tcttagctga acagacacaa aaggtgaaga cggcccaagc cctagtaacg
     1501 gaaaaagaag tggatttaga gacagccaag caaaatcaag tggcagctaa tgaaaaagtg
     1561 gaggccgtta aacccaaggc gacctataaa ttttcaatca atttgccaga ctatttaaga
     1621 gatgcttatg ttaatctggt taaaacggac ttttctaaag acagtataga tgcagcaact
     1681 caggctgaaa aacgctatta tggtgatgtc aggtcttttg atgaaagaga taaattgtca
     1741 tatgcgacca tcgaatcaac agacccaact ctttatgatg ttgaaaatct agatatagaa
     1801 caactattgt tgctcaacca gtttgctatt gactacacga acgcctacag acaagcttta
     1861 gggattgata aaaaaatagt gggcaatgaa tggttaatag aagtagcaga tgtgcgtgcc
     1921 cgcctatatg aagaaaagta tccagaagga ttttacggac atgacgggga aatcattgca
     1981 gcagcaaatg atgaagtatt tggagaaggt tccctaatgg ccactggtag tgagattcta
     2041 gcctatccta acattagttc atctggtgga ctgtatgaac agaataccaa ttactatacg
     2101 atgtcagaaa ttcttcatgt catcgcccaa ggaattaacg gttttatgtt aaatgattcc
     2161 ggatctgctt atggtcactt tgcccaattg atgacctatg aggcgatggg atttgacctt
     2221 tactacactg atgactattt tgaggaatat caatcaggtg ttggtaattt tgttgttgta
     2281 ggggctggaa cggctactaa tgatattaaa gactttaaac ggtacaatga ctgggatgta
     2341 attgaagaaa ctgattctga aattacgctt ggtgacccga agagaaaatt cattaatctt
     2401 gagggcgaag ttgcttatcg tcggtcagta aatttaccca agaataatta taaagtctat
     2461 gatcgttttg ttgaaagaaa tattagctcg caagactata gtgcctatga gtccgcacta
     2521 aaagaccaga atgcagcaca gtcatcctat aacaatgttc aagctgagta tgaaaaggtg
     2581 gctaaagagt tagcgaaagc acaaaatgat ctatcttctg ctcaatccac ctacaatgaa
     2641 cttgtcaata ctgctcttca gactccggaa gcgaaaaaag ctctggaact agcacagaca
     2701 gacttagctt cggctcaaga agtcttagta actgctcaaa accaatggca agtagcagat
     2761 gtcaaggcga aggctctcgc tacaaagata gcaaaagctc aagctgacta cgataatcta
     2821 ttggcgacag caactacgct taaagctcaa gcagatgata gaaaagctga ggtagcaact
     2881 gcccaatctg tcttaacaca agctcaaaac aaattgacag aggcacgtca agcggtcgaa
     2941 agagctgagc aaggagtagt ttcagccaag accaatcttt caacgcttaa agaagcacag
     3001 gtaactcttg ccaaagctca agtagcctat gcagtagcac agaagaatgc acaagcagcc
     3061 aatcaaagtc tttcagagac tagagcaaaa ttggcagact taaaactagt ctacgaaaag
     3121 gcttatactg agtaccttga tcttaaaaaa ctttatgacc tacaaacgat ggtaacccca
     3181 caaccaacgg ttgatagtga caactctaaa gaaaacttgg gacaaggaga ctcttctcaa
     3241 aacgatgtta agactttgtc taataccaag gtgaaactag cgacaaataa agatctttca
     3301 aaaacggctc tcaatgagat aagcattgcg gctgcgacaa cagaacataa gtttgctaaa
     3361 gtacaaactc tcccagctac tggcgagaag gaaactagct tgctctctct tttaggctta
     3421 acagcactag caacaggtct cggtctggca gcacgtcgtc gccaaaatgg ataaaatttt
     3481 tgaattttta agtaaaaact cttgcacatg caggagtttt ttgatatcat gttctagtgc
     3541 cgtaaaaatt acggctgtag ctttgatgca agaggttgcg acacgctcgg ttgcattgcc
     3601 acgcgactcg tgttggtttt cttgtggagc tagcctatta tgttaaatag acgaaaagga
     3661 gaaaaagatg gcaaacaaaa aaatccgcat ccgcttgaaa gcgtacgaac accgtacact
     3721 tgatacagca gctgcaaaaa tcgttgaaac tgcaactcgt acaggtgctc aagtagcagg
     3781 tccagttcca cttccaacag aacgtagcct ctacacaatc atccgtgcga ctcacaagta
     3841 caaagactct cgtgagcagt tcgaaatgcg tacacacaaa cgtttgatcg acatcatcaa
     3901 cccaactcaa aaaacagttg atgctttgat gaaattggat cttccaagtg gtgtaaacgt
     3961 agaaattaaa ttataatcaa gtagcaaggt aaactaaaag taagtgttca taattgaaca
     4021 cgggctaaac tccgtgtgaa aaagataaac tttcctagaa acagaagttt cttcgtcaag
     4081 tttcctattt tcacgttgag tttgacgccc tttgtatctt ggtttgagca tgaaaaacgc
     4141 tcgttaaaaa ctttttaaat acaaaattaa gaaaaggaat atttttctca tgacaaaagg
     4201 aatcttaggg aaaaaagtgg gaatgactca aatcttcact gaatctggtg aatttatccc
     4261 tgtaactgtc atcgaagcaa ctccaaacgt tgttcttcaa gtgaaaacag ttgaaactga
     4321 tggttatgca gcagttcaag ttggttttga tgacaagcgt gaagtattga gcaacaaacc
     4381 tgccaaaggc catgtagcta aagctaacac agctcctaag cgcttcattc gtgaattcaa
     4441 aaacattgaa ggcttggaag ttggacaaga aattacagtt gaaactttcg cagctggtga
     4501 tgttgttgat gtaactggta catctaaagg taaaggtttc caaggtgtta tcaaacgcca
     4561 cggtcaatca cgtggtccta tggctcacgg ttctcgttac caccgtcgtc caggttctat
     4621 gggtcctgtt gcacctaacc gtgtattcaa aggtaaaaac cttgcaggtc gcatgggcgg
     4681 caaccgtgta acaattcaaa accttgaagt tgtacaagtt gttccagaaa agaacgttat
     4741 ccttatcaaa ggtaacgtac caggtgctaa gaaatctctt atcactatca agtcagcagt
     4801 taaagctggt aaataataag gaaaggggaa atcagtcgaa atggcaaacg taacattatt
     4861 tgaccaaact ggtaaacaag ctggtgaagt agttcttaac gatgcgatct ttggtatcga
     4921 gccaaaccaa gcagttgtat ttgatgtgat catcagccaa cgtgctagcc ttcgtcaagg
     4981 tactcacgca gttaaaaacc gttcagcagt ctcaggtggc ggacgcaaac catggcgtca
     5041 aaaaggaact ggacgtgctc gtcaaggttc tatccgttca ccacaatggc gtggcggtgg
     5101 cgtagtcttc ggaccaactc cacgttcata cgcgtacaaa cttccacaaa aagttcgtcg
     5161 cttggcactt aaatctgttt actcagaaaa agttgctgaa aacaaatttg tagctgttaa
     5221 ctcacttgaa ttcacagctc caaaaactgc tgaatttgca aaagtacttg cagcattgag
     5281 cattgattct aaagtccttg ttattcttga agaaggcaac gaattcgcag ctctttctgc
     5341 tcgtaacatc ccaggagtta aagttgcaac tgcaacaact gcaagcgtac ttgacatcgc
     5401 aaatgcagac aaacttcttg taactcaagc agctatctct aaaattgagg aggttcttgc
     5461 ataatgaatt tgtatgatgt tatcaaaaaa cctgtcatca cagaaagctc aatgggccaa
     5521 ctcgaagcag gcaagtatgt atttgaagtt gacactcgtg cacacaaact cttgatcaag
     5581 caagctgttg aagctgcatt cgagggtgtt aaagttgcaa atgttaacac aatcaacgtg
     5641 aaacctaaaa caaaacgcgt aggtcgttat gtaggtcgca caaacaaagt gaaaaaagca
     5701 atcatcacat tgactgctga ttcaaaagcg atcgaattgt tcgctacagc tgacgctgaa
     5761 taatcaaagg aggaattaac gtgggtatta aagtttataa accaacgaca aatggccgtc
     5821 gtaacatgac ttctttggac ttcgctgaaa tcacaacaag cactccagaa aaaagcttgc
     5881 ttgttgcttt gaagagcaaa gctggtcgta acaacaacgg tcgcatcact gttcgtcacc
     5941 aaggtggcgg tcacaaacgt ttttaccgtt tgattgactt caaacgtaac aaagatggcg
     6001 ttgaagcaat cgttaaaact atcgagtacg atccaaaccg ttcagcaaac atcgctcttg
     6061 tacactacac agacggtgtt aaagcttata tcattgctcc taaaggtctt gaagttggtc
     6121 aacgcatcgt ttcaggtcca gaagcagata tcaaagttgg taacgcactt ccacttgcaa
     6181 acatcccagt cggtactgtt gttcacaaca tcgagttgaa accaggtcgc ggtggtgagt
     6241 tggttcgtgc tgctggtgca tctgcacagg ttcttggtca agaaggtaaa tacgttcttg
     6301 ttcgccttca atcaggtgaa gttcgtatga tccttggtac ttgccgtgct actgttggta
     6361 ctgtaggtaa cgaacaacat ggccttgtta accttggtaa agcaggacgt agccgttgga
     6421 aaggtatccg tccaacagtt cgcggttctg taatgaaccc taacgatcac ccacacggtg
     6481 gtggtgaagg taaagcacca gttggtcgta aagcaccatc tacaccatgg ggtaaaccag
     6541 ctcttggttt gaaaactcgt aacaagaaag ctaaatctga caaacttatc gttcgtcgtc
     6601 gcaaccaaaa ataatttatt cttagttgct tagcattcta tatcatccgc caactcggta
     6661 gggtttgtta tggactgact attccagcac ctcagtttga ttgaaatgcc agtttgacgc
     6721 agtggttgat tgcagtttct agtagcttag ctacgtcgaa gcttctaatc aactgtgcgg
     6781 ggggcaggac accgaacatg gtaactgggg ttctgtccag ctcccaagcc gctgtggtac
     6841 atattttaaa ggagaaaaca caaaaatggg acgtagtctt aaaaaaggac ctttcgtcga
     6901 tgagcatttg atgaaaaaag ttgaagctca agcaaatgac gaaaagaaaa aagtaattaa
     6961 aacttggtca cgtcgttcaa cgatcttccc aagtttcatc ggttatacaa tcgcagttta
     7021 cgatggacgt aaacacgtgc ctgtatacat tcaagaagac atggtaggtc acaaacttgg
     7081 tgaatttgca ccaactcgta cttacaaagg tcatgctgct gacgacaaga aaactcgtcg
     7141 taaataattt aggaggaaaa cacaatggca gaaattactt cagctaaagc aactgctcgc
     7201 acagtacgtg tttcacctcg taaatcacgt cttgtcttgg ataatatccg tggcaaaagc
     7261 gtagcagacg caatcgcaat cttgaaattc acaccaaaca aagctgcagg cattatcgag
     7321 ggagttttga actcagcaat cgctaacgct gaaaacaact ttggtttgga aaaagctaac
     7381 ttggtagtca gcgaagcatt cgcaaacgaa ggaccaacgt tgaaacgttt ccgtccacgt
     7441 gcgaaaggtt cagcttcacc aattaacaaa cgcacagctc acattactgt agttgtggca
     7501 gagaaataag gaggtaaaaa cgtgggtcaa aaagtacatc caattggtat gcgtgttggc
     7561 atcatccgtg attgggatgc taaatggtat gctgaaaaag aatacgcgga ttaccttcat
     7621 gaagatcttg caatccgcaa ctttatcaaa aaagaattgg ctgatgcgtc aacatcaaca
     7681 atcgaaatcg aacgtgctgt aaataaagtt atcgtttcta tccacactgc taaaccaggt
     7741 atggttatcg gtaaagctgg tagcaacgtt gatgcacttc gtgctcaatt gaacaaattg
     7801 actggtaaac aagtacacat caacatcatc gaaatcaaac aacctgattt ggatgcacac
     7861 cttgttggtg agtcaatcgc tcgtcaattg gagcaacgtg tggcattccg ccgtgctcaa
     7921 aaacaagcta tccaacgtgc aatgcgcgct ggtgcaaaag gtatcaaaac acaagtttct
     7981 ggtcgtttga acggtgctga tattgcccgt gcagaaggct actcagaagg aactgttcct
     8041 cttcatacac ttcgtgcgga tatcgactac gcttgggaag aagctttgac aacttacggt
     8101 aaacttggtg ttaaagtatg gatctaccgt ggtgaagttc ttccagctcg taaaaacact
     8161 aaaggaggta aataacaaat gttagtacct aaacgtgtaa aacaccgtcg tgaattccgt
     8221 ggaaaaatgc gcggtgaagc taaaggtgga aaacaagtag actttggtca atacggtctt
     8281 caagcaacta ctagctcatg gattacaaac cgccaaatcg aagctgcccg tatcgctatg
     8341 acgcgttaca tgaaacgtgg tggtaaagtt tggattaaaa tcttcccaca caaatcatac
     8401 actgctaaag ctatcggtgt acgtatgggt tctggtaaag gtgctcctga aggttgggta
     8461 gctccagtta aacgcggtaa ggttatgttt gaagtagctg gcgtttctga agaaatcgct
     8521 cgcgaagcat tccgccttgc tggtcacaaa ttgccagtta aagttaaatt cgtaaaacgt
     8581 gaagcagaat aaggagaaga catgaaactt caagaaatta aagattttgt aaaagaactt
     8641 cgtggccttt ctcaagaaga acttgctaag aaagaaaacg aattgaagaa agaactcttc
     8701 gagcttcgtt tccaagctgc tgctggtcaa cttgagcaaa ctgctcgctt gaacgaagtg
     8761 aagaaacaaa ttgcacgtat caaaactgtg caatctgaaa ctaaataata gattgggaaa
     8821 ggagaatttc aatggaacgc aataatcgta aagttcttgt tggacgcgta gtatctgaca
     8881 aaatggacaa aacaatcaca gttgtagttg aaactaaacg taaccaccca gtctatggta
     8941 aacgtattaa ctactctaaa aagtacaaag ctcatgatga aaacaatgtt gctaaagaag
     9001 gcgatatcgt tcgtatcatg gaaactcgcc cactttcagc tacaaaacgt ttccgtcttg
     9061 tagaagttgt ggaagaggca gttatcattt aatcaacctg aaaggagaaa attgacatga
     9121 ttcaaacaga gactcgtttg aaagttgctg acaacagtgg cgcacgtgaa atcttgacaa
     9181 tcaaagttct tggtggttca ggacgtaaat tcgcgaacat cggcgacatc atcgttgctt
     9241 cagtaaaaca agctactcct ggtggtgcgg ttaaaaaagg tgacgttgta aaagccgtta
     9301 tcgttcgtac taagacaggt gctcgtcgtg ctgatggttc ttacatcaaa ttcgatgaga
     9361 atgctgcagt tatcatccgt gaagataaaa cacctcgcgg aactcgtatc tttggcccag
     9421 tggcacgcga attgcgtgac ggcggtttca tgaaaatcgt ttcattggca ccagaagtac
     9481 tttaatctaa caaactaagt cccctgttat ctcaccagag taacagggtg cccattaggg
     9541 cgtaagaaat cataggagaa atcaaatgtt tgtaaaaaaa ggcgataaag ttcgcgtaat
     9601 cgctggtaaa gacaaaggcg ttgaagcagt tgtcgtaaca gcacttccaa aagtaaacaa
     9661 agttattgtt gaaggtgtta acatcgttaa gaaacaccaa aaaccaaata gcgaaaaccc
     9721 tcaaggtgct atcgttgaaa aagaagctcc aatccatgtg tcaaacgttc aagttcttga
     9781 caaaaatggt gttgcaggac gcgttggtta caagtttgta gacggcaaaa aagttcgcta
     9841 caacaaaaaa tcaggcgaag tgcttgatta atcacgaagg aaaggagaag tataatggca
     9901 aatcgtttaa aagaaaaata tcttaatgaa gtagttcctg ctttgactga acaatttaac
     9961 tattcttcag tgatggctgt accaaaagtt gataagatcg ttttgaacat gggtgttggt
    10021 gacgctgttt ctaacgctaa aaaccttgag aaagctgctc aagaattggc tttgatctca
    10081 ggtcaaaaac cacttatcac taaagctaag aaatcaatcg ccggcttccg tcttcgtgag
    10141 ggtgttgcaa tcggtgcgaa agtaactctt cgtggcgaac gtatgtatga attcttggac
    10201 aaattggtta cagtttcact tccacgtgta cgtgacttcc acggtgtacc aactaagtca
    10261 tttgacggac gtggtaacta cacacttggt gtgaaagagc aattgatctt cccagaaatc
    10321 aacttcgacg atgttgataa aactcgcggt atggatatcg ttatcgttac aactgctaac
    10381 actgacgaag aatcacgtgc attgcttact ggccttggta tgccgtttgc aaaataagag
    10441 ggagagaata aatggctaaa aaatcaatga tcgctaagaa caaacgccca gctaagttct
    10501 ctacacaagc ttacacacgc tgtgaaaaat gtggacgtcc acactcagtt taccgcaaat
    10561 tcaaattgtg ccgtgtatgc ttccgcgact tggcttacct tggacaaatt ccgggtgtaa
    10621 caaaagcttc ttggtaagaa taacttgcta ttccgttgca attcgtcgtc agcacttctt
    10681 gccgtacgct agtactgcct gcgaagtgct tcctagactt gcttaggact agcaacttat
    10741 tctatataca cttatcacta gtccgcaagg acatcattaa ctagcaagtg atccaatcaa
    10801 actgctagta agaggagaaa caacaaatgg ttatgactga cccaattgca gactttttga
    10861 cacgtattcg taacgctaat caagcaaaac acgaagtgct tgaagtacct gcatcaaaca
    10921 ttaaaaaagg tattgctaca atccttaaaa acgaaggttt tgtaaaaaac gttgaattca
    10981 tcgaagatga caaacaaggc atcatccgtg tattcttgaa atacggacca aacggtgaaa
    11041 aagttatcac aaacttgaaa cgcgtttcaa aaccaggtct tcgtgtttac tcaaaacgtg
    11101 aagatattcc aaaagttctt aacggacttg gtatcgcaat catctcaaca tcagaaggtc
    11161 ttttgactga taaacaagct cgtcaaaaga acgttggtgg tgaggttatc gcatacgttt
    11221 ggtaatcttt tagcttccaa tttcgtcatg tgcctgtgtt agagcgtctt gacatactca
    11281 agtatggtct gcgtcgctct gccgtgccac atttagaaat tgaaacctaa aagcatgata
    11341 caaatgcgag aggaccaact cttcgtgcgc gttcaaatca gacgtactga ttatttagta
    11401 tcatgtaacc tgctcaatcg aacacaggct attgtccgtg tttaaatgag cccccgtgaa
    11461 aactagtcgc ttgacggctt gataatttaa caggagaatt aaaaaatatg tcacgtattg
    11521 gtaataaagt aattacattg cctgctggcg ttgagcttgc tcaaaacaac ggcgtggtaa
    11581 ctgtaaaagg acctaaaggg gaattgactc gtgaattccc aactgctatt gaaatccgtg
    11641 tggaaggtgc agaagtaact cttcatcgtc caaacgattc aaaagaaatg aagactattc
    11701 acggtactag ccgtgctaac ctcaacaaca tggttgttgg tgtttctgaa ggcttcaaaa
    11761 aagaacttga aatgcgtggt gtcggttacc gtgctcaatt ggctggtaac aaattgacac
    11821 ttgctgttgg taaatcacat ccagatgaag tggttgcgcc agaaggtatt acatttgaag
    11881 ttccaacacc aacacaaatc gtcgtgtctg gtatcaacaa agaagttgtt ggtcaaacag
    11941 cagcttacat ccgtagcctt cgcgctcctg agccatacaa aggtaaaggt atccgctacg
    12001 ttggtgaatt cgttcgccgt aaagaaggta aaacaggtaa ataatagctt gctgaggtgg
    12061 cttagccacc tggctgacta tttctcaaat tgtttcgtaa gaaacagaat catacattaa
    12121 gaggtgaata ttgtgatttc aaaaccagat aaaaacaaaa tccgccaaaa acgccaccgt
    12181 cgcgttcgcg gtaaaatctc tggaactgct gctcgcccac gtttgaacat tttccgttct
    12241 aatacaggca tctacgctca agtgattgat gacgtagcgg gtgtaacgct cgcaagcgct
    12301 tctactcttg ataaagaagt ttcaaaaggt actaagacag aacaagctgt tgttgtaggt
    12361 aaactcgttg ctgaacgcgc ggtagctaaa ggtatttctg aagtggtctt tgaccgcggt
    12421 ggatatctct atcacggacg tgtgaaagct ttggctgaat cagctcgtga aaacggattg
    12481 aaattctaat agggaggaca ctaagaaatg gcattcaaag ataacgcagt tgaaattgaa
    12541 gaacgcgtag tagccatcaa ccgtgttaca aaagttgtta aaggtggacg tcgtcttcgt
    12601 tttgcagctc ttgtggttgt tggtgaccgt aacggtcgcg taggtttcgg tactggtaaa
    12661 gctcaagaag taccagaagc tatccgtaaa gcagttgaat ctgctaagaa aaacatgatt
    12721 gaagtaccaa tggttggtac aacaatccct cacgaagttc gctcagaatt tggtggcgct
    12781 cgtgtattgt tgaaacctgc ttcagagggt tctggggttg ctgccggtgg tgcaactcgt
    12841 gctgtaatcg aattggcagg tatcgcagat gtgacttcta agtcacttgg ttcaaacaca
    12901 ccaatcaaca tcgttcgcgc aacagttgaa ggtttgaaac aattgaaacg tgctgaagaa
    12961 gtggctgcac ttcgtggcat ctcagtttct gatttagcat aagaaaggag atactcatgg
    13021 ctcaaattaa aatcactttg actaagtctc caatcggtcg caaaccagaa caacgtaaaa
    13081 cagttgtggc acttggactt ggtaaattga actcttcagt tgttaaagaa gataacccag
    13141 ctattcttgg aatggttaac gctatctctc acttggtaac tgtagaagaa gttaaataat
    13201 ctaacaaata gactaagtcg catagagaaa tctttgcgac ttctagtcca ttttacatat
    13261 ttacatacag cgagtttgtg gaggaagact cttgtacttc acaggcgcta gcatataaaa
    13321 gaggagaaat aataatgaaa cttcatgaat tacaacctgc tacaggttct cgtaaagtcc
    13381 gcaaccgtgt aggtcgtggt acatcatcag gtaacggtaa aacatctggc cgtggtcaaa
    13441 aaggtcaaaa agctcgtagc ggtggcggtg ttcgcccagg ttttgaaggt ggacaaactc
    13501 cattgttccg tcgacttcca aaacgtggat ttacaaatat caatgctaaa gagtacgcaa
    13561 tcgttaacct tgatcaattg aacgcttttg aagatggtgc agaagtaaca ccagttgtgc
    13621 ttatcgaagc tggaatcgtt aaagctgaaa aatcaggaat taaaattctt ggtaacggtg
    13681 aattgacgaa gaaattgaca gttaaagctg ctaaattctc taaatcagct gaagaagcaa
    13741 tcacttctaa aggtggctca gtagaagtca tctaagaggt gaccgcctat gttttttaaa
    13801 cttttaaaag atgccttaaa ggtaaaattg gtacgtagta aaattctatt tactatcttt
    13861 atcctttttg tcttccgtgt aggaacccac attacagtac caggagtaaa cgcaaagagt
    13921 cttgaagcct tgtcaaacgt tccatttttg aacatgttga gtttggtttc gggaaatgct
    13981 atgcgtaatt tctcagtttt cgcactaggt gttagtcctt atattacagc ttccatcatt
    14041 gttcaacttt tgcaaatgga tattttacct aaatttgttg aatggggtaa gcaaggtgaa
    14101 gttggtcgtc gtaaactgaa tcaggcaaca cgctacattt ctttggtact ggcatttgtt
    14161 caatctattg gtattacagc aggctttaat gccttgtctg gtgcaaaatt gaccaatatg
    14221 ccattaaatt ggcaaacata tttgttgatt ggatcaatct tgacaacagg ttcgattatt
    14281 gtaacctggt tgggggaaca aatttctgaa aagggctatg gtaatggtac atcaatgatc
    14341 atcttcgcgg gtatcatttc atcactacca ggaacttttc acgagattta cattgatcgc
    14401 tttgttaata ttgaatcaag tcgtttgggg gagtcagcaa tctttgttgc tgcactcgtc
    14461 gtattaatat tctttgttgt gtattttaca acttttgtac aacaagcaga atataaatta
    14521 ccaattcaat atacaaaacg tgcacaagga gcaccttcta gctcatattt accgctgaaa
    14581 ttgaatccat caggagtcat tcccgtaatc tttgcaggct caatcactgc agttccaact
    14641 tctttgattc aatatttcgc aagtcaaaat aagagtgccg ggtggttatt gacggttcag
    14701 gaatactttg attattcaac tgctaaaggt atgattgtat atgcaggttt aattattgcc
    14761 tttacattct tctacacctt tgttcaagta aatcctgaga agactgcaga aagccttcag
    14821 aaaagtgcag cctatatcca tggagttcgt cctggtaatg gcactgaaca gtttttgtca
    14881 aaattattga caagattggc agtaatcggt gcactcttct tgagttttgt agctttgttg
    14941 cctatccttg cgcaaaatct ctttgggctt tcttcaagca ttgcgttcct tggtacaagt
    15001 ttgattatcg taatctctac aagtatcgaa ggcatcaagc aattagaagg ctaccttctt
    15061 aagagaaaat atgtaggttt cttagaaatt acagaataga atataggttg acctagtcaa
    15121 ccttctattt tgtttttaga taagtttgtc aataatggca aatttatgtg aaaacaaaat
    15181 aaggagtttg tcatgaatct tttaattatg ggtttaccag gtgctggtaa agggacacaa
    15241 gcggccaaga ttgttgagaa attcaatgtt gctcatatct caacaggaga tatgttccgt
    15301 gcagcaatgg ccaatcagac tgaaatgggt attcttgcca agtcgtacat tgataagggc
    15361 gacctcgttc ccgatgaagt ttctaatggc attgtcaaag aacgtttggt tcaggatgac
    15421 atcaaggaaa aaggcttttt acttgatggc tatcctcgta cgattgaaca agcccatgcc
    15481 ttggatgaaa atttggctga cttaggaatt gagttgcaag gtgttatcaa tattgagatt
    15541 gatccttcaa aattggtaga gcgtctcagc ggtcgtatta ttcataaaga aaccggagag
    15601 actttccaca aagtattcaa tccacctgtt ggagactaca aagaggaaga cttctatcaa
    15661 cgtgaagatg acaagccaga atctgtcaaa cgtcgtttag aggtcaatat cgcacaagga
    15721 cagccaatca ttgatcatta tcgtgcaaaa gggctggtcc atgatattga aggtgaccaa
    15781 gacattgacc ttgttttcca agcaattgat acagtactat caaaattgca ataaactaat
    15841 agatttggct tgcatttttt atacaaagat gataaaatag cctagtctga cttataattg
    15901 tttcctctgt gttcagagga catcaaatcg atatttagag aggggttact tttgcatggc
    15961 aaaagaagat gtgattgaaa ttgaaggcaa agtagtcgat acaatgccaa atgctatgtt
    16021 tactgttgag ttggagaatg gacaccaagt ccttgcaact gtttcaggta aaatccgtaa
    16081 aaactacatt cgtattttgg tcggtgaccg cgtaactgtt gagcttagtc catacgactt
    16141 gacacgtgga cgtatcacat accgctttaa atagtcgaaa tacttggagg gattaaacat
    16201 gaaagtaaga ccatcggtca aaccaatttg cgaatactgc aaagttattc gtcgtaatgg
    16261 tcgtgttatg gtgatttgcc cagcaaaccc taaacacaag caacgtcaag gttaagaaat
    16321 agaaaggaga aaacatggct cgtattgctg gagttgacat tccaaatgac aaacgtgtag
    16381 ttatttcatt aacttatgtt tatggtatcg gtcttgcaac atctaaaaaa attcttgcag
    16441 ctgcaggtat ttcagaagat gtacgcgtga aagatttgac atcagatcaa gaagatgcta
    16501 ttcgtcgtga agttgatgca atcaaagttg aaggtgacct ccgtcgtgaa gttaacttga
    16561 acatcaaacg tttgatggaa atcggttcat accgtggtat ccgtcaccgt cgtggacttc
    16621 ctgtccgtgg acaaaacact aaaaacaatg cccgcactcg taaaggtaaa gctgttgcga
    16681 ttgcaggtaa gaaaaaataa tataggaggt agaaaaattg gctaaaccaa cacgtaaacg
    16741 tcgtgtgaaa aagaatatcg aatctggtat tgctcatatt cacgctacat ttaataacac
    16801 tattgttatg attactgatg tgcatggtaa cgctattgct tggtcatcag ctggtgctct
    16861 tggtttcaaa ggttctcgta aatctacacc attcgcagcc caaatggctt cagaagcagc
    16921 tgctaaatct gcacaagaac acggtcttaa aacagttgaa gttaccgtta aaggcccagg
    16981 ttcaggtcgt gagtctgcta tccgcgctct tgctgccgct ggtcttgaag taacagcaat
    17041 tcgtgatgtg actcctgtac cacacaatgg tgctcgtcct ccaaaacgtc gccgtgtata
    17101 atcatacatt ccatacacag cttttcgttt aagagggagt aagaaatgat tgagtttgaa
    17161 aaaccaacaa taacaaaaat tgatgaaaat aaagattacg gcagatttgt aatcgaacca
    17221 ttagaacgtg gttacggtac aactcttggt aactctcttc gtcgtgtact tcttgcctca
    17281 cttccaggtg ctgcagtaac atcaattaaa attgatggtg tactccacga attcgacaca
    17341 gttccaggtg ttcgtgaaga tgttatgcaa attattctta acatcaaagg cattgctgta
    17401 aaatcttatg tcgaagacga aaagaaaatt gaacttgatg tagtaggtcc agctgaggta
    17461 acagcaggag acattcttac agatagtgac attgaaattg taaaccctga ccattatctc
    17521 tttaccattg ctgatggtgc cgcttttaaa gctgttttga ctgtcaattc aggtcgtggt
    17581 tatgtaccag cagagggtaa taagaaagat gatgcaccag tgggaacact tgctgtagat
    17641 tctatctata cgccagtgaa gaaagtcaat tatcaagttg aaccagctcg tgttggtagc
    17701 aacgatggtt ttgacaaatt aacacttgaa atcaacacaa atggcaccat tataccagaa
    17761 gatgctttag gtctttctgc acgcattttg atggagcact taggtctctt cactgacttg
    17821 actgaagttg caaaatctgc agaagtgatg aaagaagctg aagtggcttc agatgatcgt
    17881 atgcttgatc gtacgattga agaattggac ctatctgttc gctcatataa ctgtctgaaa
    17941 cgtgcaggca ttaacactgt attcgacttg acagagaaaa ctgagccaga aatgatgaaa
    18001 gtgcgcaatc ttggtcgcaa gagtcttgaa gaagttaaag ttaaattggc tgatcttggt
    18061 ctaggattga aaaaagataa ataatatagg aggaaatcat ggcataccgt aaactaggac
    18121 gcactagctc acaacgtaaa gcaatgttgc gcgatttgac aactgacctt ttgatcaacg
    18181 aatcaatcgt tacaactgaa gctcgtgcta aagaaatccg taaaacagtt gaaaaaatga
    18241 tcacacttgg taaacgtggt gatttgcacg cacgtcgtca agcagcagca tttgttcgta
    18301 acgaaattgc atctgaaaac tatgatgaag caactgataa gtacacttct actacagcac
    18361 ttcaaaaatt gttctctgaa attgcacctc gttatgcaga acgtaatggt ggatatactc
    18421 gtatcctcaa aactgaacca cgtcgtggtg atgctgcacc aatggcaatt atcgaacttg
    18481 tataagatca tcaattttgt tgagtgttat gatgatggaa tcctattctg attcttagtc
    18541 tagctctggt ctaccgctga gcttgtctca gcggtaacac tcatcatgtt gattggacgc
    18601 ttgtttacga aattactcta agatagaata atttcgtaag caggcgtttt tattttactc
    18661 aaaaattttg atatacttat aaaatgaata gagaagacac gacatcccta ggtaattgtt
    18721 ttgaagaata ctattttgct aacattaaag aaaagccaga tatgtttata ggtgtagaat
    18781 tagaatatcc gatagttaat atctcaggga aagcaacttc tatccaagtg gctacagata
    18841 tgatgtgaca tatatctaat caaaatgggt ttaccatcgt caaaagagat gatagaggaa
    18901 atccgataga actccagcac gagtcgggag acctcatact atttgaagtc acgtataata
    18961 cactagaatt tgcattcgca aaagccaaaa atattggtag tgtagaagag cgtcataaag
    19021 aatttctaga gcatattcaa tattatttgc gccaaaatgg aaacgaattg caggggttag
    19081 ggataaatcc caactgggaa aataatgaca atagatcggt agatacgggc cgatataaga
    19141 tgttgatgaa ctatctcaag ctaggagaag gcaaacctaa tatgcatccc tatactggat
    19201 atgctggctt tatttgcgga aatcaagtgc agtttgatgt gagtcgaaaa tcctttttac
    19261 gagtcattaa tgcgtttaat aaaaatgaag cagcgaaggc gtttttgttt gcaaattcac
    19321 cattcgatca tatggatgat atggccctta ctagggatta tttttgggaa tattcaatgc
    19381 atggcctctt aaaaaataac gttggtatct actcagagga atttcaaact gaggcagaat
    19441 attgtcaata ccaagaagag tccgcaatgt tttatgtcat cagggataac tgctattatt
    19501 attttaaacc aattactgtc aaatcttttt ttgagcaaga aaaatttgca gcatattcag
    19561 aaactggaga gatatgtcac tttgttccga aagcagatga tttcaaaaac catcgctcat
    19621 accattatca agagcttacc aaacgaggga ctattgaatt tcgaagtaca tgtacacaac
    19681 catttgaaac aacatttgct cccatagcct ttcatttagg tctgctcgcc aatctcgtga
    19741 aattggaaga aattctagaa agtacggagt tttttaaaga atttggcaga aattattcaa
    19801 agctacgtag acaattttcg agaaaaaaac tttctgattt agaacaaaga atggtgaaag
    19861 acttttctaa gacattatta gattgtgcac atgaagctct ccttttgaga ggatacagtg
    19921 aagaaaaata tttaactcca ctgtacaatt cattaatcga tgacttcggg gtattgtgac
    19981 agtctactaa aatatgagta ggtagccata gatttttaca aaaaacataa agaccggtaa
    20041 aattttgata tactggaggc atacgaagac aaatatacaa tctctgatta gtatgtctct
    20101 cagtttttcg ccaaatttca taaaaaaatc caaaaaatcc caaaaacccg gttgacaaag
    20161 tatataagtc gtgatagaat aattgagttg tctcttgagg ggctagttaa tagaggaacg
    20221 aaaaaaagtt tcgaaaaagt gttgacaaga ccatcagaag atgatagaat tattgagttg
    20281 tctcttgagg aactggttaa cagagggacg aaaaaaagtt tcaaaaaagt gttgacaaag
    20341 ttcataagaa atgataaact aagatagttg tcgcgagagc gcgataacaa caagaccttt
    20401 gaaaattaaa gaagacgaac caaacgtgca gggtgattta tctaaggata aatcgtcaat
    20461 gacaaaaaac aataaaacgg aaagctagtg atagcttgag tttgaatcaa aactttt
//
LOCUS       DASGAC010000022        20394 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.022, whole genome shotgun sequence.
ACCESSION   DASGAC010000022 DASGAC010000000
VERSION     DASGAC010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20394)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20394)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20394
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.022"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(91..1446)
                     /locus_tag="U1335_000614"
     CDS             complement(91..1446)
                     /locus_tag="U1335_000614"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEM5231120.1"
                     /translation="MKVIKFGGSSLASAGQLEKVFNIVQSDSERRFVVVSAPGKRNAE
                     DTKVTDALIKYYKEYVNGKDVTASQEWIINRYQAMVDELGFTANSMKKIADSIISLAS
                     LPIDDNEFLYDAFLAAGEDNNAKLIAEYFTHRGLPARYVHPKKAGIIVSSEPGNARIL
                     PSSYDKIEELRDTDEVLIIPGFFGVTVDNQICTFSRGGSDITGSIIAAGVKADLYENF
                     TDVDGIFAAHPGIIKDPHSIKELTYREMRELAYAGFSVLHDEALLPAYRGRIPLVIKN
                     TNNPTHPGTRIVHKHTEQTVPVVGIAADDGFVSINLSKYLMNREVGFGRKVLQILEDL
                     NIRWEHMPTGIDDLSIVVRERELTPIKEEEILRQLNTKMEVDKAEIEHGLSIIMIVGE
                     NMKSHVGVTATATTALSKQNVNLAMISQGASEVSVMFVVKTEEKKRALHALYEAFFNE
                     Q"
     gene            1623..2264
                     /locus_tag="U1335_000615"
     CDS             1623..2264
                     /locus_tag="U1335_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEM5231121.1"
                     /translation="MVKAIIFDMDGVLFDTETFYFQRRADFLATKGLSVDHLDPSIFV
                     GGRASQIWQRILGDDYDNWDVPALEEEYRVYKEKRPTPYAERIFPEVKAVLERLTIQG
                     IPVVLASNTDRSEIERALLDAGIRSHFSHVFSAMDCEAPKPDPTVYMKAASATGVAKS
                     DILVFEDSAKGIEAAKKAGLTVWAIRDQHYGIDQSKADKLVDNLEEAFDLLRF"
     gene            2702..3493
                     /locus_tag="U1335_000616"
     CDS             2702..3493
                     /locus_tag="U1335_000616"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HEM5231122.1"
                     /translation="MAYQTIRYEVIDSVAILTLNRPEVANGFNIPMCEEILEAIRLAE
                     GDASVKILQIQAQGSIFSVGGDLVEMKRAVDDDDIASLVKIAELVNDISFAMKKLSKV
                     VIMVTDGAVAGAAANMAVAADFVIASSKTKFIQAFVGVGLAPDAGGLFLLSRAIGANR
                     ASHLAMTGEGLSADKALEYGIVYKLAEPEKLEKTVAQVIKKLLRGSVNSYAAIKRLTW
                     ESQFKDWESYRRLELDLQETLAYKEDFKEGVRAHAERRRPVFTGD"
     gene            3574..4008
                     /locus_tag="U1335_000617"
     CDS             3574..4008
                     /locus_tag="U1335_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM5231123.1"
                     /translation="MEDPKVNEYLTAIFNNVLVIEETSLRGSRFNDISIKEMHTIDVI
                     GSIDGATPSDVARTLMVTLGTVTTSLNNLERKGYVERIRSTKDRRVVHLYLTKKGRLV
                     YRLHQRFHNEMVKQITDGMDDAEYQVMKKGLMKLYHFLEDLK"
     gene            4005..4982
                     /locus_tag="U1335_000618"
     CDS             4005..4982
                     /locus_tag="U1335_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HEM5231124.1"
                     /translation="MRNHAKISQVAHYLPKKIVTNDDLAQQMDTSDEWIRSRTGIGQR
                     HIVTGETTSDLASQVARKLLEKSQLDASEIDFIIVATITPDASMPSTAAMVQAAIGAK
                     KAFAYDLVAACSGFVFALSTAEKLLASGVYKRGLVIGAETLSRSVDWSDRSTAVLFGD
                     GAGGVLLEACEQPSFLAEILRTDGGRGASLTAGIHQKETPFSTQSRQQPFIQMEGRAI
                     FEFATRDVTATMAELLEQANTTVDCVDYFLLHQANIRILDKMARKLGVAREKFPANMD
                     KYGNTSAASLPILLSECVESGMLRLDGSQTVLMAGFGGGLTWGTLLLQL"
     gene            5042..5266
                     /locus_tag="U1335_000619"
     CDS             5042..5266
                     /locus_tag="U1335_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEM5231125.1"
                     /translation="MAVFEKVQEIIVEELGKDAEEVTLTTTFEDLDADSLDLFQVISE
                     IEDAFDIQIDTEEGLTTVGDLVAYVEEKTK"
     gene            5436..6401
                     /gene="fabK"
                     /locus_tag="U1335_000620"
     CDS             5436..6401
                     /gene="fabK"
                     /locus_tag="U1335_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-[acyl-carrier-protein] reductase FabK"
                     /protein_id="HEM5231126.1"
                     /translation="MKTKITELLDIKYPIFQGGMAWVADGDLAGAVSNAGGLGIIGGG
                     NAPKEVVKANIDKVKSITDKPFGVNIMLLSPFADDIVDLVIEEGVKVVTTGAGNPGKY
                     MERLHAAGITVIPVVPSVALAKRMEKLGVDAVIAEGMEAGGHIGKLTTMTLVRQVVEA
                     VSIPVIAAGGIADGAGAAAAFMLGAEAVQVGTRFVVATESNAHQAYKEKVLKAKDIDT
                     TVSASIVGHPVRAIKNKLSSAYAAAEKDFLAGKISADAIEELGAGALRNAVVDGDVIN
                     GSVMAGQIAGLVSKEESCEDILKDIYYGAAKVIREEASRWASVGE"
     gene            6403..7323
                     /gene="fabD"
                     /locus_tag="U1335_000621"
     CDS             6403..7323
                     /gene="fabD"
                     /locus_tag="U1335_000621"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEM5231127.1"
                     /translation="MTKTAFLFAGQGAQTLGMARDLYETYPIVKEAYDQASQILGYDV
                     RDLIDHREDELNQTRYTQPAILTTSLAIYRLLAEKGIKPDMVAGLSLGEYSALVASGA
                     LAFGDAIALIAKRGEYMETAAPAGTGKMVAVLNTDVNLIEEICSTVTSGIVSPANYNT
                     PAQIVIGGEVAAVDEAVEALKAAGVKRMIPLNVSGPFHTALLRPASEQLAQALEEVEF
                     ADFQVDLVGNTEAKVMKQEDIKSLLTRQVMEPVRFYESIATMQAAGVTKFIEIGPGKV
                     LAGFIKKIDKTAEVVTVEDVASLTDLLTSQ"
     gene            7333..8067
                     /gene="fabG"
                     /locus_tag="U1335_000622"
     CDS             7333..8067
                     /gene="fabG"
                     /locus_tag="U1335_000622"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004229639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HEM5231128.1"
                     /translation="MELTNKNVFVTGSSRGIGLAIAHKFASLGANVVLNGRGQLGQDL
                     LDSFSSYGVKVVAISGDISSSADAKRMVAEAVEALGSVDILVNNAGITKDGMALRMTE
                     EDFESVLSINLTGTFNMTQAVLKPMTKAREGAIINLSSVVGLTGNAGQANYAASKAGV
                     IGFTKSIAREVASRNVRVNAIAPGFIQSDMTDVLSDKIKDAMLGQIPMKRFGLTEEVA
                     DVAVFLAKQEYLTGQVIAVDGGLTMQ"
     gene            8093..9328
                     /gene="fabF"
                     /locus_tag="U1335_000623"
     CDS             8093..9328
                     /gene="fabF"
                     /locus_tag="U1335_000623"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEM5231129.1"
                     /translation="MTKLNRVVVTGYGLTSPIGNTPEEFWDSLVNGKIGIGKITKFNT
                     SDYTVHNAAEIKDFPFDKYFVKKDTNRYDNYSLYALYAAREAVTNAGLDTEAVDSDRF
                     GVILSTGIGGILEIEEQVARMNEKGPKRIRPMALPKALPNMAAGNIAMQVGANGVCKC
                     VITACASSNDALGEAFREIKCGFQDVMLAGGSEAAITPFAIGGFQALTAMSTTEDPER
                     ASIPFDKDRNGFVMGEGAAVLVLESLEHAEARGATILAEIVGYGNTCDAHHMTSPHPE
                     GLGAIKAMKLAISEAGLEPADIDYINAHGTSTPANEKGESQAIVSVFGKNTPVSSTKS
                     FTGHLLGAAGAVEAAAVIEAMRHSYAPKTAGTTELSDYIEADVIFGQGRDMEIRHAIS
                     NTFGFGGHNSVIAFKRWEA"
     gene            9329..9805
                     /locus_tag="U1335_000624"
     CDS             9329..9805
                     /locus_tag="U1335_000624"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEM5231130.1"
                     /translation="MNITEMKDLMSQFDQSSLREFSYSNAGETLHFSKNQQATVAPSP
                     IVEAPLAPVAPASPAPVPAVETSEQAPVEVSSSSVAEGAVVESPLVGVAYLSPAPDKP
                     AFVAVGDTVKKGQTLMIIEAMKVMNEVPADRDGVVTEILVANQDVVEFGQGLVRIK"
     gene            9802..10224
                     /gene="fabZ"
                     /locus_tag="U1335_000625"
     CDS             9802..10224
                     /gene="fabZ"
                     /locus_tag="U1335_000625"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000565430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEM5231131.1"
                     /translation="MIDILKIKEALPHRYPMLLVDRVLEVSEDEIVALKNVTINEPFF
                     NGHFPDYPVMPGVLIMEALAQTAGVLELSKEENKGKLVFYAGMDKVKFKKQVVPGDQL
                     IMTAKFVKRRGTIAVVEAKAEVDGKRAASGVLTFAIGN"
     gene            10249..11622
                     /locus_tag="U1335_000626"
     CDS             10249..11622
                     /locus_tag="U1335_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEM5231132.1"
                     /translation="MFEKILIANRGEIAVRIIRAARELGIATVAVYSEADKEALHTML
                     ADEAICIGPARSTDSYLNMQAVISAAVVTGAQAIHPGFGFLSENSKFATLCEEVGIKF
                     IGPSGTVMDTMGDKINARAEMIKAQVPVIPGSDGEVLTSQEALAIAEKIGYPVMLKAS
                     AGGGGKGIRKVEKAEDLVPAFESASSEAKAAFGNGAMYMERVVYPARHIEVQILADQH
                     GHVIHLGERDCSLQRNNQKVLEEAPSIAIGQTMRDRIGQAAVRAAQSVGYENAGTIEF
                     LLDEAKGEFYFMEMNTRVQVEHPVTEFVTGVDIVKEQIKIAAGQELSVRQEDVKITGH
                     AIECRINAENPAFNFAPSPGKISNLYLPSGGVGLRVDSAVYPGYTIPPYYDSMIAKVI
                     VHGENRFEALMKMQRALYELEIDGVVTNTDFQLDLISDKRVVAGDYDTAYLMEEFLPR
                     YQEELKK"
     gene            11637..12503
                     /locus_tag="U1335_000627"
     CDS             11637..12503
                     /locus_tag="U1335_000627"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HEM5231133.1"
                     /translation="MALFRKKDKYIRINPNRSRIESAPQAKPEVPDELFSKCPACKVI
                     LYKNDLGLEKTCQHCSYNFRITAQERLALTVDDGSFEELFTGIETKNPLDFPNYLEKL
                     AATRQKTGLDEAVLTGKATIGGQPVALGIMDSHFIMASMGTVVGEKITRLFELAIEEH
                     LPVVLFTASGGARMQEGIMSLMQMAKISAAVKRHSNAGLFYLTVLTDPTTGGVTASFA
                     MEGDIILAEPQTLVGFAGRRVIESTVRENLPDDFQKAEFLQEHGFVDAIVKRQDLPAT
                     ISRLLRMHGGVR"
     gene            12500..13273
                     /locus_tag="U1335_000628"
     CDS             12500..13273
                     /locus_tag="U1335_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HEM5231134.1"
                     /translation="MTSDVARMIRLARDQARLTTLDYATQLFDDFIELHGDRNFRDDG
                     AVVGGIGFLAGQPVTVIGIQKGKNLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPV
                     VTFINTAGAYPGVGAEERGQGEAIACNLMEMSDLKVPIIAIIIGEGGSGGALALAVAD
                     QVWMLENSMYAVLSPEGFASILWKDGSRAMEAAELMKITSYELEKLQVVDRVVLENGR
                     ATKEVLSDIKDNLVSQLAQLQALPLDKLLENRYQRFRKY"
     gene            13338..13799
                     /locus_tag="U1335_000629"
     CDS             13338..13799
                     /locus_tag="U1335_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5231135.1"
                     /translation="MLVKADLSNAEELLPIQHRAFATLYETYQDQYNPAIETMDYFQS
                     RFARPNCSYYKIVEEGHTVGLVRTTVADDADQGWLGLIGIDPDHRGKGHGHKAMLELE
                     QLYPTVKRWVLCTILQEPRLVAFYEKLGYKSINTEPEQEGIDMVYMEKWIG"
     gene            13810..14475
                     /locus_tag="U1335_000630"
     CDS             13810..14475
                     /locus_tag="U1335_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5231136.1"
                     /translation="MLETFSQRLEWICRKIWILLQVFLLLLLELIPTFILQKSTSPVA
                     QWTAGLSSIGIMVFMCWLAERKGLAIWDRKFLTWKGLGLVALTVLFTSLSTVLGHTIM
                     DLQGIEDTANQIGIDKLLRMIPFGLAFVRIACQAAISEEIIVRGYLFKKFFEKHKILG
                     IVVSGLVFAFLHGPTDLGSWIIYASPGFLMAYLYYKTDYLIYPMAVHFINNAWAVVAF
                     YYL"
     gene            14714..15376
                     /locus_tag="U1335_000631"
     CDS             14714..15376
                     /locus_tag="U1335_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5231137.1"
                     /translation="MEIFSKGLKWLGQKLWILLRAFGFMMLAVLPDAILDLSTSQWAQ
                     WGAALLSVGILVFMYWRAEKNGIKIWDSNVLTWKGLGLVVLTFTVAQLSNYLGYYILE
                     LQGIEETSNDLELTKLVENIPFWLALINMACLPAISEEIIVRGYLFKKFFEKYKILGI
                     VVSGLVFAFLHGPTDLGSWIIYASPGFLLAYLYYKTDYLIYPIAVHFINNAWSVVAFY
                     YF"
     gene            complement(15425..15640)
                     /locus_tag="U1335_000632"
     CDS             complement(15425..15640)
                     /locus_tag="U1335_000632"
                     /inference="COORDINATES: protein motif:HMM:NF015957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HEM5231138.1"
                     /translation="MKKKWYKDKSRGELAGVIAGLYDYFDLYENYGWKLENVRLVVII
                     LAIVTNLPFLTAYIILAILLPDKSELN"
     gene            complement(15652..16926)
                     /gene="serS"
                     /locus_tag="U1335_000633"
     CDS             complement(15652..16926)
                     /gene="serS"
                     /locus_tag="U1335_000633"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000884256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEM5231139.1"
                     /translation="MLDIKRIRTDFDGVAAKLATRGVAAETLADIKDLDAKRRDILVT
                     VEELKAERNTVSAEIAQAKRNKENADDKIAAMQKLSADVKNLDAELLEIDEKLNAILA
                     VLPNTPHDSVPVGADEEENVEVRRWGTPREFTFEPKAHWDLGEDLDILDWERGAKVTG
                     ARFLFYKNLGARLERALYNFMLDEHIAEGYQEIITPYMVNHDSMFGTGQYPKFKEDTF
                     ELADTNFVLIPTAEVPLTNYYRNEILEEKDLPIYFTAMSPSFRSEAGSAGRDTRGLIR
                     LHQFHKVEMVKFATPEQSYDELEKMTANAENILQKLGLPYRVLALCTGDMGFSAAKTY
                     DLEVWIPAQNAYREISSCSNTEDFQARRAQIRYRDAADGKVKLLHTLNGSGLAVGRTV
                     AAILENYQNEDGSVTIPEVLRPYMGGVEVIKP"
     gene            complement(17143..17514)
                     /locus_tag="U1335_000634"
     CDS             complement(17143..17514)
                     /locus_tag="U1335_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003092275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF956 family protein"
                     /protein_id="HEM5231140.1"
                     /translation="MAQSQNTSVELQTTGVSYMGFGGKVGKFLIGDKALEFYPDSNVE
                     RYIQIPWSEMTSIGANVSGKAISRHFEIYTEKSRFLFASKDSGKILKIAREHIGNEKV
                     VKLPTLMQTIGRKISNLFAKK"
     gene            complement(17575..18486)
                     /locus_tag="U1335_000635"
     CDS             complement(17575..18486)
                     /locus_tag="U1335_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter family
                     subunit IID"
                     /protein_id="HEM5231141.1"
                     /translation="MSEKIQLSVSDRKKVWWRSTFLQGSWNYERMQNLGWAYAMIPAI
                     KKLYTKKEDQAAALERHLEFFNTHPYVASPILGVTLALEEERANGAEIDDTAIQGVKI
                     GMMGPLAGIGDPVFWFTVRPILGALGASLALSGNIMGPIIFFFGWNAIRMAFLWYTQE
                     FGYKAGSEITKDMSGGILQDITKGASILGMFILAVLVQRWVSITFAVNLPAKQLSEGA
                     YIVFPKGTVTGTELQGILNDALSGLSLYPTQAQTLQGQLDSLIPGLMGLLLTFLCMHL
                     LKKKVTPITMIIGLFIVGILARFFNIM"
     gene            complement(18504..19316)
                     /locus_tag="U1335_000636"
     CDS             complement(18504..19316)
                     /locus_tag="U1335_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001280330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HEM5231142.1"
                     /translation="MSDITLISAILVVIVAFFAGLEGILDEFQFHQPLVACTLIGLVT
                     GNLAAGVMLGGSLQMIALGWANIGAAVAPDAALASVAAAIIMIKGGDFSAEGIAVATT
                     TAIPLAVAGLFLTMIVRTISVGLVHGADKAAKDANFAAVERYHLFALLLQGLRIAIPA
                     ALLLAMPAEAVQGVLEAMPEWLKGGMAVGGGMVVAVGYAMVINMMATREVWPFFAIGF
                     ALAAISQLTLIALGTIGVAIAFIYLNLSKQGGSGNGGNAGSNDPIGDILEDY"
     gene            complement(19348..20340)
                     /gene="manX"
                     /locus_tag="U1335_000637"
     CDS             complement(19348..20340)
                     /gene="manX"
                     /locus_tag="U1335_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002308759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HEM5231143.1"
                     /translation="MSIGIIIASHGEFAAGIHQSGSMIFGEQEKVQVVTFMPSEGPDD
                     LYAKLNAAVDAFDADDEVLVLADLWSGSPFNQASRVAGENPDRKFAIITGLNLPMLIQ
                     AYTERMINAAAGVEEVAANIIKEAKDGVKVLPEELQPAEAAPVADAAPAAPQGAIPPG
                     TVIGDGKLKINLARIDTRLLHGQVATGWTPASKADRIIVASDTVAKDELRKQLIKQAA
                     PGNVKANVVPIKKLIEVSKDPRFGNTHALILFETPQEALEAIEGGVEIKELNVGSMAH
                     STGKTMVNNVLSMDKDDVATFERLRDLGVEFDVRKVPNDSKKDLFELINKANVQ"
BASE COUNT         5681 a         4058 c         4924 g         5731 t
ORIGIN      
        1 atggagcttg acactcatca aatcaagtca acaacgtctg gttttgattt tcgaagagca
       61 tgaagaggga actgaccgac ctcgttgtga ttattgctcg ttaaaaaaag cttcatagag
      121 tgcgtgcaga gcgcgtttct tttcttcggt tttgacaacg aacataacag aaacttcact
      181 ggctccctgt gaaatcattg ccaagttgac attttgttta gagagggcag tggtagcggt
      241 agctgttaca ccgacatggc tcttcatatt ttcaccaaca atcatgataa tagataaacc
      301 atgttcgatt tcggccttgt caacttccat tttcgtattg agttgacgaa ggatctcttc
      361 ttccttgata ggagtcaatt cacgctcacg gactacgatg gataaatcgt caataccggt
      421 cggcatgtgc tcccagcgaa tattgagatc ttcgagaatt tgcaacacct tgcgaccaaa
      481 accaacttca cggttcatca agtatttgga caagttaatg ctgacaaaac catcgtctgc
      541 agcaataccg acaacaggaa ctgtttgctc ggtatgtttg tgtacaattc gggtaccagg
      601 gtgagttggg ttattggtgt ttttgataac caatggaatc cgtccgcgat aggcaggaag
      661 gagggcttca tcgtggagga cggagaaacc tgcataagct aattctcgca tttcacgata
      721 ggtcaattct ttgattgaat gtggatcttt aatgatgcca ggatgggcag caaaaatacc
      781 atcgacatct gtaaagtttt catagaggtc agccttgacc ccggcagcaa tgatggaacc
      841 tgtaatatcc gatccacctc gtgagaaggt acaaatctgg ttatcaacag ttacaccgaa
      901 gaatcctgga ataatgagta cttcatctgt atcacgaagc tcttcgattt tgtcataact
      961 tgaaggcaaa atacgagcat ttcctggttc ggagctgaca ataataccag cttttttagg
     1021 atggacatag cgtgcaggca atcctctgtg ggtaaaatat tcggcaatca atttggcatt
     1081 attatcttca ccagctgcta agaatgcgtc gtaaaggaat tcgttatcat caattggtag
     1141 gctggccaaa gagatgatgc tgtctgcgat tttcttcatg ctgttagctg tgaaaccaag
     1201 ttcgtcaacc attgcctgat aacggttgat gatccattct tgactggcag tcacatcttt
     1261 tccgttaaca tattctttat aatatttaat caacgcatca gtaactttag tatcctcggc
     1321 attgcgtttt ccaggtgcag acaccacaac aaagcgacgt tctgaatcag attgaacaat
     1381 attgaaaact ttttctaact gtccagctga agcaagtgag cttcccccaa atttaataac
     1441 tttcattctc atctccttgg atattttttt ctattatagc agaatgatat gaaattgtca
     1501 gtatgttcag ataaatcttg ccaagaattt tatcgaaaaa cgaacaagag acaggtatga
     1561 aaatttcaga aaaacatttt tttctttcaa ctgtgttaca attaaagtga taggaggtaa
     1621 gtatggtaaa agcaattatt ttcgacatgg atggtgtact ttttgacaca gaaacattct
     1681 attttcagcg tcgagcggat tttttagcga caaaaggttt atcggttgat catttggatc
     1741 catctatatt tgtcggtgga agggctagtc aaatttggca acggatttta ggggatgatt
     1801 atgataactg ggatgtccct gccttggaag aagaatatcg tgtgtataaa gaaaagcgac
     1861 caacccctta tgcagagagg atttttcctg aagttaaagc ggtattggag agactaacta
     1921 tccaaggtat tcctgtagtt ttggcttcaa ataccgaccg ttcagaaatc gaacgtgctt
     1981 tactagatgc tggtatacgc tctcacttta gtcatgtttt ctcagcgatg gattgtgagg
     2041 ccccaaaacc agatcccaca gtttatatga aagcagccag tgcaacagga gtagctaaat
     2101 cggacatttt agtatttgaa gatagtgcga aggggattga agcggctaaa aaagcaggtt
     2161 tgacagtttg ggctattcga gaccagcatt atggaattga tcagtcgaaa gcagacaaat
     2221 tggtagacaa tcttgaagag gcctttgact tactgcgatt ttaagaaata tgatattgta
     2281 gtccaagtat tagttcttgg taaaaaatgg tatttctagc tcagaatcca gttagatctt
     2341 ccaaaagtat taacgtgaaa aaatgaaagt tataaattaa acttagagcc tatatttata
     2401 gttcagactt gcatattgag gttgtttttt caaaatacag tcagtatttc ccgcaaaaac
     2461 taccttgatg agtgaaaaag ccaaggcgct ttgcgtgtga atataggttc ttaaacacgt
     2521 tattttctag catatctaaa ttttatattg cgatgatagc ccccatcttt ttcggatgtc
     2581 acactttcct tgctggaaaa aaagtgacaa ttgtaaaaac tgtgttacaa tggaaaacaa
     2641 gaatttgaag tttgatattc aaatctttta attatcaaac tattttgaaa ggagcaaggg
     2701 aatggcctac caaacaattc gttatgaagt aattgattcc gtagcgattc taactttaaa
     2761 cagaccggaa gtggcaaatg gttttaatat tcctatgtgt gaagaaatct tagaagcaat
     2821 ccgccttgca gaaggggatg cctccgtcaa aattttacaa attcaagcac agggttccat
     2881 tttctccgtg ggtggagatt tagttgagat gaagcgtgca gttgatgatg atgatattgc
     2941 ttctttggta aaaatagcag agctggtgaa tgatatttcg tttgcgatga agaaattgtc
     3001 taaagtagtc attatggtga cagatggggc agtggctgga gccgcggcta atatggcagt
     3061 ggcagctgat tttgttattg cctccagcaa gacaaaattc atccaagcct ttgtaggcgt
     3121 tggacttgcg ccggatgcgg ggggactctt tctactgagt cgtgctattg gggctaatcg
     3181 tgctagtcac ttggcgatga caggagaggg cttatcagcg gataaggctt tagaatatgg
     3241 gattgtttat aaattggcag agccagaaaa actagaaaag acagttgccc aggtcataaa
     3301 aaaactcttg cgaggctcag taaactctta tgcagcaatc aaacgactga catgggaaag
     3361 tcaatttaaa gactgggagt cttatcgccg attggagctg gatttacaag aaacattggc
     3421 ctataaagag gattttaaag agggagttag agcgcacgca gaacgacgta gaccagtgtt
     3481 tacgggagat taatttttaa attagtaaaa aaatgtttga caatcaaagt tttatggttt
     3541 atactttgac tatcaaagta aaggaggcct gttttggaag atccaaaagt aaatgaatat
     3601 ctaacggcca tttttaacaa tgtgttggtg attgaagaaa caagtctgcg tggtagccga
     3661 ttcaatgata tttcgattaa ggaaatgcac acgattgatg tgataggaag tattgatgga
     3721 gctactccga gtgatgttgc tcggactttg atggtaacct taggtactgt tacaactagc
     3781 ttgaacaatt tggaaagaaa aggatatgtt gagcgtattc gttcgaccaa agatcggcga
     3841 gttgttcatc tctatctgac caaaaaaggt cgactggtct atcgtttgca tcaacgattt
     3901 cacaatgaaa tggtgaaaca gattacagat ggtatggatg atgcagagta tcaggtaatg
     3961 aagaaaggac tcatgaaact ctatcacttc ttggaggatt tgaaatgaga aaccatgcta
     4021 aaatcagtca ggtggcccac tatcttccga agaagattgt gaccaatgat gatttggccc
     4081 agcaaatgga taccagtgat gagtggattc gtagccgtac aggtatcggt caacggcaca
     4141 ttgttactgg agagacgacg agtgatttgg ctagtcaagt ggctagaaaa ttactggaaa
     4201 agtctcagct agatgctagt gaaattgact tcatcatcgt agcaacgatt actccagatg
     4261 cttcaatgcc atctacggca gctatggtcc aagcagcaat tggcgcgaaa aaggctttcg
     4321 cctatgatct cgttgcagct tgttcaggat ttgtttttgc gctatcaaca gcggaaaaat
     4381 tacttgcttc aggagtctat aagagaggac ttgtcattgg tgcagagacc ctatctaggt
     4441 ctgtcgactg gtcagatcga tcaacggctg ttttatttgg agatggtgct ggaggagttt
     4501 tgctggaagc gtgtgaacaa ccgagctttt tagcagaaat cttgcgaacg gatggcggtc
     4561 gaggtgcgag tctgacagca gggatacacc agaaagagac gccattctcg acacaaagtc
     4621 gtcaacaacc ctttatccaa atggagggca gagctatatt tgaatttgcg acgagggatg
     4681 ttacagcaac catggcagag ctgttagaac aagctaatac gactgtggat tgcgttgatt
     4741 atttcttgct ccatcaagcc aatatacgta ttctggataa gatggctcgt aaattgggag
     4801 tggcgcgtga aaaatttcca gcaaatatgg ataaatatgg caataccagc gcagcaagtc
     4861 ttcctattct cttatcagaa tgtgtagaga gcggaatgtt gcgattggat ggaagccaga
     4921 ctgttctcat ggctggtttc ggtggaggcc tcacatgggg aactctactc ttacaacttt
     4981 agttaattcc ttgccctagg caagattaaa atattttatt ttctaaaagg agacacatat
     5041 catggcagta tttgaaaaag tacaggaaat catcgttgaa gaattgggta aggatgctga
     5101 agaagtaact cttacaacaa cctttgaaga tttggacgca gattcattgg atcttttcca
     5161 agttatctct gaaatcgaag atgcattcga catccaaatc gatactgaag aaggtttgac
     5221 aactgtaggc gatttggttg cgtatgttga agaaaaaaca aaataatgac tgttaaggaa
     5281 agtgctattt agcatttttc ttaaattaaa tactttgata atcaaaacat tgaaaagtca
     5341 aactattttt gagtgagggg gcaacccttc acttgtttac ctaatgattt gatattcaaa
     5401 cgattaggta agcaagaaaa aaagatgagg gaattatgaa gacgaaaata acagaattgc
     5461 tcgatattaa gtatccaatt tttcaaggtg gtatggcttg ggtagctgat ggagatttgg
     5521 ctggtgccgt ctctaatgca ggtggtctag gcatcatcgg tggaggaaat gctcccaaag
     5581 aggtagtcaa ggcaaatatt gacaaggtta aatctatcac ggacaaacct ttcggtgtca
     5641 atatcatgct tttgtctcct tttgcggatg acattgttga cctagttatc gaagaaggtg
     5701 tgaaagttgt caccacagga gcaggaaatc caggtaagta tatggagcgt ctccatgctg
     5761 cagggattac agttattcct gttgtaccga gtgtagccct tgctaaacgc atggaaaaat
     5821 taggggtaga tgctgttatt gctgaaggta tggaagccgg aggccatatt ggtaaattga
     5881 ccaccatgac cttggttcgt caggttgttg aagctgtatc tattcctgtt attgctgctg
     5941 gaggtattgc agatggtgca ggtgctgcgg cagcctttat gttgggagca gaagcggtgc
     6001 aagttggaac tcgttttgta gtagctacag agtccaatgc ccatcaggct tataaggaaa
     6061 aagttttaaa agctaaggat attgatacaa ctgtatctgc ttctattgtt ggacatcctg
     6121 tgagagccat caagaataag ttgtcatctg cttatgcagc tgcagagaaa gatttcttgg
     6181 caggtaaaat ttcggcagat gctattgaag aacttggtgc gggagcactc cgcaatgcag
     6241 ttgttgatgg tgatgtaata aatggttccg tgatggctgg tcaaattgct ggtctggttt
     6301 ctaaagaaga atcttgtgaa gatattttga aagacatcta ttatggagca gccaaagtga
     6361 ttagagaaga ggcaagccgt tgggcttcgg ttggagaata ggatgacaaa gacagctttt
     6421 ctttttgcag gtcagggggc ccagacactt ggtatggccc gtgacctcta tgagacttat
     6481 cccattgtca aggaagctta cgaccaggct agtcagattc tgggttatga tgtgcgggac
     6541 ttgattgacc atcgggaaga cgagctcaac cagacccgct atacccagcc tgcgattttg
     6601 acaacctcac ttgccattta tcgtttgttg gcagaaaaag ggataaaacc cgacatggtg
     6661 gctggtttgt ccttgggaga atattcagct ctggtagcat cgggagcttt ggcctttgga
     6721 gatgcgattg ccctgattgc taagcgtggt gaatatatgg aaacggctgc gccagcaggg
     6781 actggtaaga tggttgctgt tcttaataca gatgtcaact tgattgaaga aatctgttcg
     6841 actgttacct ctggtattgt ttccccagcc aactacaaca caccagccca aatcgtcatc
     6901 ggtggcgagg tagcagctgt ggatgaggcg gtggaagcct tgaaggcggc tggtgtcaaa
     6961 cgcatgattc cgctcaatgt gtcggggcct ttccatacag ctcttttgcg cccagcttcg
     7021 gagcaactgg ctcaggctct ggaagaggtg gagttcgcag actttcaagt agacttggtt
     7081 gggaatacgg aagccaaggt catgaaacaa gaggatatca agtctctctt aacccgtcaa
     7141 gtcatggagc ctgttcgctt ttacgagtcc attgcaacca tgcaggcggc tggtgtgacc
     7201 aagtttatcg aaatcggtcc gggtaaggtc ttggcaggct ttatcaaaaa aattgataag
     7261 acagctgagg ttgtgacagt agaagatgtg gcaagtctaa ctgacttgtt gactagccaa
     7321 taaggagaaa tcatggaact taccaataaa aatgtgtttg tgacaggttc aagtcgtgga
     7381 atcggcttgg ccattgccca taagtttgca agccttggtg ccaatgtggt gctgaatggt
     7441 cgtggtcagc tggggcagga cttgctggat agcttttcaa gctacggtgt caaagtggtg
     7501 gcgatttcag gcgatatttc cagctcggca gatgccaaac gaatggtagc tgaggcagtt
     7561 gaggctcttg gtagcgtcga tatcttggtc aataatgcag ggattaccaa agacggtatg
     7621 gccttgcgaa tgacggaaga agatttcgag agcgttttga gtatcaatct aacagggacc
     7681 tttaacatga cccaggctgt tttgaaaccg atgaccaagg cacgtgaagg ggctattatc
     7741 aacctttcta gtgtggtcgg tttgacaggg aatgctggcc aggccaacta tgctgcttct
     7801 aaggcaggtg ttatcggctt tacaaaatcc attgctcgtg aagtcgctag tcgcaatgtt
     7861 cgtgtcaatg ctatcgcacc aggctttatc cagtcagata tgacagatgt tctgtctgat
     7921 aaaatcaagg atgccatgtt ggggcaaatt cctatgaaac gctttggctt gacggaagaa
     7981 gttgcggatg tagctgtatt ccttgccaag caagaatatc tgacaggtca agtgattgcg
     8041 gttgatggtg gcttgacaat gcagtaagtt tcctaatgag aaaggtttga aaatgacaaa
     8101 attaaatcgt gtagtagtaa caggctatgg tctgacatca ccaatcggaa atacgccaga
     8161 ggaattctgg gatagcctgg tcaatggtaa gattgggatc ggaaagatta ccaagtttaa
     8221 cactagtgac tatactgtcc ataatgcagc agaaatcaaa gattttcctt ttgacaaata
     8281 ctttgttaaa aaagatacta accgctacga caactattcc ctctatgctc tctatgcggc
     8341 tcgtgaggca gtaaccaatg ctggtcttga tacagaagcc gttgacagcg atcgttttgg
     8401 tgttatcttg tcaactggta ttggtggtat tttggaaatc gaagagcagg ttgctcgcat
     8461 gaacgaaaaa ggtccaaaac gcattcgtcc catggcgctt ccaaaagctc ttccaaatat
     8521 ggcggctggt aatattgcca tgcaggttgg tgccaatggt gtctgtaagt gtgtcatcac
     8581 agcctgtgct tcgtcaaatg atgccttagg agaagccttc cgtgaaatca agtgtggctt
     8641 ccaagatgtt atgctggcag gtggttcaga agcggctatt acgccttttg caatcggtgg
     8701 attccaggct ttaacagcga tgtcgacgac tgaggatcca gaacgtgctt ccattccgtt
     8761 tgacaaggac cgcaatggtt ttgtcatggg agaaggggct gctgtcttgg tcttggaaag
     8821 tttggaacac gcagaagcgc gtggagcaac cattttggca gagattgttg gttacggtaa
     8881 tacctgcgat gctcaccaca tgacctctcc acacccagaa ggtttgggtg ctatcaaggc
     8941 tatgaagttg gccatttcag aagcaggttt ggagccagct gatattgact acatcaatgc
     9001 ccatggaact tcaacaccgg ctaatgaaaa aggggaaagt caagctatcg tatccgtctt
     9061 cggtaagaac acgccagttt cttccaccaa gtccttcacg ggtcacttgt tgggggcggc
     9121 aggtgccgtt gaagcagcag cagttattga ggcgatgcgt cattcttatg cgccgaagac
     9181 agcaggtacg acggaattat ctgactacat cgaggcagat gttatcttcg gtcaaggtcg
     9241 tgacatggaa atccgtcatg ccatttcaaa tacatttggc tttggtggtc acaactcggt
     9301 gattgccttc aagcgttggg aggcttaagt gaatattaca gaaatgaagg acttgatgag
     9361 tcagtttgac cagtcaagtt tgcgagaatt ttcatatagc aatgctgggg aaaccttgca
     9421 tttcagtaaa aatcagcagg cgacagtggc tccgagtcca atcgtagaag ctccacttgc
     9481 tccagtagct cctgcaagcc cagcccctgt tccagcagtt gaaaccagtg agcaagctcc
     9541 agtagaagtt agctcaagct ctgtagcaga gggtgcggta gtggaaagtc cactggttgg
     9601 tgtggcctat ttgtcaccag ctcctgacaa gccagccttt gtggcagtcg gcgatacggt
     9661 caaaaaaggg cagaccctca tgattatcga agctatgaag gtcatgaacg aagtacctgc
     9721 tgaccgtgac ggtgtggtca cagagatttt ggtggccaac caagatgttg tagaatttgg
     9781 acaaggattg gtacgcatca aatgattgat attttgaaaa ttaaagaggc tctacctcat
     9841 cgctatccta tgctcttggt cgatcgtgtc cttgaagtat cagaagatga gattgtcgcc
     9901 cttaaaaatg tgaccattaa cgagcctttc ttcaacgggc atttcccaga ctatcctgtc
     9961 atgccaggcg ttctcatcat ggaggctttg gcacaaaccg caggtgtctt ggagttatcc
    10021 aaggaagaaa acaagggcaa gttggtattt tatgccggca tggacaaggt caaatttaag
    10081 aagcaagttg tacctggtga ccagttgatt atgaccgcta aatttgtcaa acgccgtgga
    10141 accattgcgg tcgttgaggc aaaggcagag gtggacggaa aacgggctgc gtcgggggta
    10201 ctaacctttg ctattggaaa ttagtatcta aaggagatag gattcatcat gtttgagaag
    10261 attttgattg ccaatcgtgg tgagattgcg gtgcggatca ttcgtgcggc cagagagttg
    10321 gggattgcga ccgtggctgt ctattcagag gcggacaagg aagcactcca caccatgttg
    10381 gcagatgagg caatctgtat cggaccagct cgttcgacag attcctatct caatatgcag
    10441 gcggttatct cggcggctgt tgtgacaggt gcgcaggcta ttcatcctgg ctttggattt
    10501 ttgagtgaaa actctaaatt cgccaccctc tgtgaagagg tcggtatcaa atttatcggg
    10561 ccttctggga cggtcatgga taccatgggc gataaaatca atgcccgagc agagatgatt
    10621 aaggctcaag tgcctgttat tccaggatca gacggtgaag tcttaactag ccaagaagct
    10681 cttgcaatcg ctgagaaaat tgggtaccct gtcatgctca aagcatcggc aggaggtggc
    10741 ggtaagggga ttcgtaaggt ggaaaaagct gaagacctag tgcctgcctt tgaatcagct
    10801 tccagtgagg ccaaggcagc ctttggaaac ggagccatgt atatggagcg tgttgtctat
    10861 ccagcccggc atatcgaggt gcagattttg gcggaccaac acggccatgt catccatcta
    10921 ggagaacggg attgttccct tcagcgtaac aatcaaaagg ttttggaaga agctccatct
    10981 atcgctattg gtcagaccat gcgggaccgt atcggtcaag cagcagtgcg ggctgcccag
    11041 tcagttggtt atgaaaatgc ggggaccatt gagtttctct tggatgaagc caagggcgaa
    11101 ttttacttca tggaaatgaa cacacgggtg caggtggaac accctgttac cgaatttgtc
    11161 actggtgtgg atattgtcaa ggagcaaatc aagattgcgg ctggtcagga actcagtgtc
    11221 cgacaagaag atgtgaagat tactggtcat gccattgaat gccggatcaa tgctgaaaat
    11281 ccagccttta actttgcccc aagtccaggt aagatttcca acctctacct gccaagtggc
    11341 ggcgttggtc tgcgtgtgga ttcggcagtt tatccaggct acaccattcc gccatattat
    11401 gattctatga ttgccaaggt tatcgtgcat ggggaaaatc gttttgaagc cctgatgaag
    11461 atgcagcgag ccctctacga attggaaatt gacggagtgg tgaccaatac agacttccag
    11521 ctggacttga tttccgacaa gcgagtggtg gcaggtgact acgatactgc ctacctcatg
    11581 gaagaatttt taccccgcta tcaggaagaa ttaaaaaagt aaattaggag aatgctatgg
    11641 ctttgtttcg caaaaaggac aaatatatcc gcatcaatcc caatcgttcg cggatagagt
    11701 cagcacctca agcaaagcca gaggtgccag atgaactatt ttccaaatgt cctgcttgta
    11761 aggtcatcct ttacaagaat gatttgggat tagagaaaac ctgtcaacac tgttcctata
    11821 attttcggat tacagcccag gaacgcctgg cattgacagt tgatgacggt tcgtttgagg
    11881 aattgtttac agggattgaa accaaaaatc ccttggactt ccccaattat ttagagaaat
    11941 tggcagccac ccgtcaaaaa acgggcttgg atgaagcagt tttgacaggc aaggcgacaa
    12001 tcggtggtca gccagttgcc cttggaatca tggattctca ctttatcatg gcctctatgg
    12061 gaacggtagt tggtgagaaa attacccgcc tctttgagtt ggcgattgaa gagcatttgc
    12121 cagttgtcct ctttaccgca tctggtggtg ctcgcatgca ggaaggcatc atgagcctga
    12181 tgcaaatggc caagatttcg gcagctgtaa aacgccattc taacgctggc ctcttttacc
    12241 tgacggtctt gacagacccc acaacaggag gtgtgacggc tagttttgct atggaaggtg
    12301 atattatcct ggctgaaccg cagaccttgg ttggttttgc aggacgacgg gttattgagt
    12361 caactgtgcg tgaaaatctg ccagatgatt tccagaaggc tgaattttta caagaacacg
    12421 gctttgtcga tgccattgtc aaacgtcagg acttgccagc gaccattagt cgcttgttga
    12481 gaatgcatgg aggtgtcaga tgaccagtga tgtagcacgt atgatccgtt tggcacgtga
    12541 ccaggctcgc ctgaccacct tggactatgc cacacaactc tttgatgact ttatcgaatt
    12601 gcacggtgat cggaatttcc gcgatgacgg agctgtagtg ggaggtatcg gctttttagc
    12661 aggtcagcct gtgacagtga tcggtatcca aaagggcaag aaccttcaag ataacctaaa
    12721 acgtaacttt ggtcagcccc accctgaagg ttaccgcaaa gcccttcgcc tcatgaaaca
    12781 ggcggagaag ttcgggcgtc ccgttgtcac cttcatcaat actgctggag cctatcccgg
    12841 tgttggtgcc gaggagcgtg gacagggaga ggccattgcc tgcaacctca tggagatgag
    12901 cgatctcaag gttcccatta tcgctattat catcggcgag ggcggctctg gtggagcttt
    12961 ggctctagcg gttgcagacc aagtctggat gctggaaaac tccatgtacg ccgtcctcag
    13021 ccccgaaggt ttcgcctcta tcctctggaa agacggcagt cgggccatgg aagcggcaga
    13081 actcatgaag attacctcct atgagttgga gaagctccaa gtggtcgatc gggtggtttt
    13141 ggaaaatggc agagcgacca aggaagtctt gtctgatatc aaggacaacc tggtcagtca
    13201 gttggctcaa ctacaagcct tgccacttga taaattgctt gaaaaccgct atcaacgttt
    13261 tagaaaatac taggaagacc tagtattttt ttatgatatt tgatataata aataaaatag
    13321 tttccaggag gttttccatg ttagtaaaag cagatttatc aaacgcagaa gaattgctac
    13381 ctattcagca ccgagcattt gcaactttgt atgaaaccta tcaggaccag tacaaccctg
    13441 ccattgaaac tatggactat ttccaatcac gctttgcacg accaaattgc agctactata
    13501 agattgttga agaagggcac acagtcggtt tagtgcgaac aacggtcgct gatgatgctg
    13561 accagggctg gctaggcttg attggcattg atccagacca caggggaaaa ggccatggtc
    13621 ataaggctat gttagagtta gaacaacttt atccaacggt taagcgttgg gtgctctgta
    13681 cgatcttgca ggagcctaga ttagttgctt tctacgaaaa actcggctac aagtctataa
    13741 atacagagcc tgagcaggag ggtatagata tggtctatat ggagaagtgg ataggatagg
    13801 aggttagaaa tgctagaaac attcagtcaa cgattggaat ggatttgtag gaaaatctgg
    13861 attttactgc aggtctttct attgttgctt cttgaactca ttccaacttt catattgcaa
    13921 aaatccacct cgccagtcgc tcaatggact gccggcctat cttctattgg aataatggtc
    13981 tttatgtgtt ggttggcaga aaggaaaggg cttgccattt gggatagaaa attcctgacc
    14041 tggaagggac ttggattggt tgcactgacc gtactattta ccagcctttc tactgtctta
    14101 gggcatacta tcatggacct tcaagggatt gaagatacgg ctaatcagat tggtattgac
    14161 aagctgttgc gaatgattcc ctttgggtta gcctttgtta gaattgcctg tcaggcagcg
    14221 atttcagagg agatcattgt cagaggctat ctattcaaaa agttttttga aaagcacaag
    14281 attttgggaa ttgtggtgtc tggtttggta tttgcttttc tgcatggacc aacagatttg
    14341 ggctcttgga ttatttatgc tagcccagga tttttaatgg cttacctcta ctacaagaca
    14401 gattacctca tctatcccat ggcagtgcat tttatcaata atgcctgggc ggtggtggcc
    14461 ttctactatt tataaaactg caataaaata tagctcttga aagctggaag aatgccctct
    14521 taactaacct tgttaggaac tatcagattt tcctattgga taattaatca acgctttaga
    14581 aaatactagg aagacctagt attttttagg ttttgttgac aaaacgactg cattgttgta
    14641 aaattgtctt attaaaacaa tacatgattg aacaatataa atgttttgtt gtgtatcgga
    14701 aaaggagatt gatatggaaa tattcagtaa aggtttgaaa tggcttggtc aaaaactttg
    14761 gattttattg agagcatttg gtttcatgat gctagctgtt cttccagatg cgatattaga
    14821 tctatctact tcacaatggg ctcagtgggg agcagccttg ttgtccgttg gcatccttgt
    14881 ctttatgtac tggagggctg aaaagaatgg catcaagatt tgggatagca atgttttaac
    14941 ttggaaaggt cttggtttag ttgtcttaac tttcacagtg gctcagctat ctaactacct
    15001 tggctattac attctggaac ttcaggggat tgaagaaacc agcaatgatc ttgaattgac
    15061 aaagttagta gaaaacattc cattttggtt agctcttatc aatatggctt gtttgcctgc
    15121 tatttcagag gaaatcattg tcagaggtta tctgttcaaa aagttttttg aaaagtacaa
    15181 gattctagga attgtagtat ctggcttggt atttgctttc ctgcatggac cgacagattt
    15241 gggttcttgg atcatttatg ctagcccagg tttcttgctg gcttacctct actataaaac
    15301 agattatctg atttacccaa tagcagttca ttttatcaat aatgcctggt cggtagtggc
    15361 attttactac ttttaataag cataaagaaa agacgattcc gagtggagtc gtcttttgcg
    15421 tgctttagtt gagttcagat ttatctggta aaagtatagc cagaatgata taggcagtta
    15481 gaaaggggag gttggtgaca atggccaaga taatgaccac caaacgaaca ttttctaatt
    15541 tccaaccgta gttctcatat aggtcaaagt agtcataaag acctgcgata acgccagcca
    15601 gttcaccacg acttttgtcc ttataccatt tctttttcat attctttacc tctaaggctt
    15661 aatcacttct accccaccca tatatggacg gagaacttct ggaatagtca cagagccgtc
    15721 ttcgttttgg tagttttcaa ggattgccgc aaccgtacga cctactgcta gaccagagcc
    15781 gttgagggtg tggagcaatt tgaccttacc gtcagcagca tcgcggtagc ggatttgggc
    15841 acggcgagct tggaaatctt ctgtgttgga acagcttgag atttcacggt aggcattttg
    15901 ggctggaatc cagacttcca agtcataagt cttagctgct gagaagccca tatcgcctgt
    15961 acagagggct aaaacgcggt atggcaagcc taatttttga aggatatttt ctgcgtttgc
    16021 cgtcattttt tccaattcat cataagactg ctctggtgtg gcaaatttga ccatttcaac
    16081 cttgtggaat tggtggaggc ggatcagacc acgggtgtca cgaccagcag aaccagcttc
    16141 agaacggaaa gatgggctca tagctgtgaa gtagattggc aggtcttttt cttccagaat
    16201 ctcgttgcgg tagtagttgg tcaatggcac ttcagcagtt gggatgagga cgaagttggt
    16261 atctgccaac tcaaaagtat cttccttgaa cttaggatat tgtccagtac cgaacataga
    16321 gtcatggttg accatgtaag gtgtgatgat ttcttggtag ccttctgcga tatgctcgtc
    16381 caacatgaag ttgtagaggg cacgctccaa gcgggcaccc aagttcttgt agaagaggaa
    16441 gcgggctccg gttacttttg cgccacgttc ccagtccaga atatctaggt cttcgcccaa
    16501 atcccagtga gcttttggct cgaaagtgaa ttcacgtgga gttccccaac ggcgaacttc
    16561 cacgttttct tcttcatctg caccaacagg gacagagtcg tgcggcgtat ttggaagaac
    16621 tgcaaggatg gcatttagtt tttcatcaat ttccaagagt tcagcgtcca agttttttac
    16681 atctgcagac agtttttgca tggcagcaat cttgtcgtca gcattttcct tgttgcgttt
    16741 tgcttgagca atttcggcag aaacagtgtt ccgttctgct tttaattctt ctacagtgac
    16801 caagatgtca cggcgctttg cgtccaagtc tttgatgtct gccaaggttt cggcagccac
    16861 accacgagta gctaatttgg cagccactcc gtcaaaatca gtacgaatac gtttgatatc
    16921 tagcatagat gtctccttta gaataaaaaa aacacagaat gagaggtgct ggagcgatat
    16981 ttaccgcggt tccatccagc ttcacattct gtgcacttta agtatgtcat ttttagccaa
    17041 cggtagaatt tcacaacttt ttcctatctg ctcacagcga ccgcagactt tctgaaagga
    17101 gctagtagct acttatccgt ttctactatt atacttgatt ttttattttt tggcaaatag
    17161 attcgaaatt tttcttccga ttgtttgcat aagagtcggt aatttcacaa ctttttcatt
    17221 gccgatatgc tcgcgggcaa ttttaagaat cttaccagaa tctttagatg caaacaagaa
    17281 tcgacttttc tctgtataaa tttcaaaatg acggctgatt gctttgccag aaacgtttgc
    17341 gccaatgcta gtcatttctg accaaggaat ctggatatag cgttcaacat tgctatctgg
    17401 gtagaattca agtgccttgt caccaattag aaatttacca accttgccac caaagcccat
    17461 gtaggaaacc cctgtggttt gtagttcaac gcttgtattt tgtgattgtg ccatagtagt
    17521 tcctttccta gatgttcatt atatcataaa accccgcaag agcggggtcc ttgattacat
    17581 aatgttgaag aaacgagcaa gaatacctac gatgaagaga ccgataatca ttgtgattgg
    17641 tgttactttc ttcttaagca agtgcatgca gaggaaagta aggagaagtc ccatcaaacc
    17701 aggaatcaag ctgtccaact gaccttgtaa tgtttgtgct tgagttgggt aaaggctaag
    17761 tccgctaagg gcgtcattca agataccttg aagttcagta ccagttacag tgcctttagg
    17821 gaagacgatg taagcacctt ctgacaattg tttagcagga agatttacag cgaaagtaat
    17881 agatacccaa cgttgaacaa gaacggcaag gatgaacata ccaaggatag atgcaccttt
    17941 agtaatatct tgaaggatac caccagacat gtctttggta atttcgctac cagctttgta
    18001 accaaattct tgtgtgtacc ataggaaagc catacggatt gcgttccaac caaagaagaa
    18061 gatgattggt cccatgatat ttccagataa tgcaagtgaa gcacccagag caccaaggat
    18121 tgggcgaaca gtaaaccaga agactgggtc accgatacca gcaagaggtc ccatcatacc
    18181 gattttcacc ccttggatag ctgtgtcatc gatttcagca ccattagcac gctcttcttc
    18241 aagggcaaga gttacaccaa ggattggtga agcaacgtat gggtgtgtgt tgaagaattc
    18301 caagtggcgt tcaagagcag cagcttgatc ttcttttttc gtgtaaagtt ttttgatagc
    18361 tggaatcatt gcataagccc aacctaagtt ttgcatacgc tcgtagttcc aagaaccttg
    18421 aaggaaggtt gaacgccacc aaactttttt acgatcgctt acggaaagtt gaattttttc
    18481 tgacatgatg aatctccctt ctcttagtag tcttcaagga tatcgccgat tgggtcattt
    18541 gaaccagcgt taccaccgtt acctgatccg ccttgtttag agaggttgag gtaaatgaaa
    18601 gcaatagcaa caccgatggt tccaagtgca atcagtgtta attggctgat agctgcaagg
    18661 gcaaaaccga ttgcgaagaa tggccatact tcacgagtcg ccatcatgtt gataaccata
    18721 gcataaccta cggcaacaac cataccaccg ccgacagcca taccaccttt gagccattct
    18781 ggcattgctt caaggacacc ttgaacagct tcggctggca ttgcaagtag aagggctgca
    18841 ggaatggcaa tacgcaaacc ttggagcaga agagcgaaca agtggtaacg ttctaccgca
    18901 gcgaagtttg catctttagc agctttgtca gctccatgta ccaaaccgac tgagatagta
    18961 cgaacgatca ttgtaaggaa aagaccagct acggcaagag ggatagcagt tgttgttgca
    19021 acggcaatac cttctgctga gaagtcgcca cctttgatca tgatgattgc agcagctaca
    19081 gaagcaagag cagcgtcagg agcaacagct gcaccaatgt ttgcccaacc aagtgcaatc
    19141 atttgtagag aaccgccaag cataacacct gcagccaagt taccagtcac aagaccgata
    19201 agggtacaag ctaccaatgg ttgatggaat tggaattcgt caaggatacc ttcaagacct
    19261 gcgaagaagg caacgatgac aacgagaatt gcagaaataa gtgtaatatc tgacatgttg
    19321 taatcctttc tatactaaca gaccgattta ttgaacgttt gccttgttga taagttcaaa
    19381 caagtctttc ttcgaatcgt ttggtacttt acgcacatca aattcaacgc caaggtcacg
    19441 caatctttca aaggttgcaa cgtcatcttt gtccattgac aatacgttgt taaccattgt
    19501 tttaccagtt gagtgagcca tagaaccgac gttcaattct ttgatttcta cgccaccttc
    19561 aattgcttca agagcttctt gaggagtttc gaaaagaatc aaggcgtgtg tgttaccaaa
    19621 gcgagggtct ttagaaacct caatcaattt cttgattggg acaacgttcg ctttcacgtt
    19681 accaggagca gcctgtttga tgagttgttt gcgcaattca tctttcgcaa ctgtatctga
    19741 agcaacgatg atacgatctg ccttagaagc aggagtccaa ccagtcgcca cttgaccgtg
    19801 caagagacga gtgtcaatac gagccaaatt gattttcaat ttgccgtctc cgataacagt
    19861 ccctggaggg attgcacctt gtggagcggc tggtgctgca tcagctactg gagcagcttc
    19921 tgcgggttga agttcttctg gaagaacctt cacaccatcc ttggcttcct tgataatgtt
    19981 tgccgcaact tcttccacgc cagcagcagc gttaatcata cgctctgtgt aagcttggat
    20041 aagcattggc aagtttagac cggtgatgat agcaaactta cgatctggat tttcaccagc
    20101 tacacggctt gcttggttga atggtgaacc actccaaagg tcagccaaaa ccaaaacttc
    20161 atcatcggca tcgaatgcgt ccacggcagc atttagctta gcgtataaat catctggacc
    20221 ttcacttggc ataaaagtaa caacttgtac tttttcttgt tcgccaaaga tcattgaacc
    20281 tgactgatga ataccagcag caaattcgcc atgacttgca ataatgattc caatactcat
    20341 tattgttccc cctaaatttt ttctagttcc tttgaaatgt aaaactatga atag
//
LOCUS       DASGAC010000023        20207 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.023, whole genome shotgun sequence.
ACCESSION   DASGAC010000023 DASGAC010000000
VERSION     DASGAC010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 20207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20207
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.023"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(120..980)
                     /locus_tag="U1335_000638"
     CDS             complement(120..980)
                     /locus_tag="U1335_000638"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEM5231144.1"
                     /translation="MKIIIPATSANIGPGFDSVGVALSKYLTIEVFEETDEWVIEHNL
                     EHVPSDKNNLLIKTALKIEKGLQPHRIRMLSDIPLARGLGSSSSVIVAGIELANQLAG
                     LNMTADEKLLKATEIEGHPDNVAPAIFGNLVISSYVNKRVQAVVTEFPEASFVAFIPN
                     YPLRTVESRGVLPSQMGYKKAVAASAIANVAVASLMAGDLEKAGKAIQSDMFHEPFRQ
                     LLVKEFCPIKQTAQELGAYATYLSGAGPTVMVLAPKDREDAIVLALEELNLDGTVHRL
                     QVDTKGIAIV"
     gene            complement(984..2270)
                     /locus_tag="U1335_000639"
     CDS             complement(984..2270)
                     /locus_tag="U1335_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019782768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEM5231145.1"
                     /translation="MVVKIGLLGFGTVASGVPFLLEENQEKIEKAAHDSIEVAKVLVK
                     DEAEKDRLLAAGHDYHFVTNIDEILADEEIAIVVELMGRIEPAKTFITRALEAGKHIV
                     TANKDLLAVHGSELRALAEEKGLALYYEAAVAGGIPILRTLVNSLAADKVTRILGVLN
                     GTSNFMLTKMVDEGWTYEKALQTSQELGYAESDPTNDVEGIDAAYKAVILSQFAFGMT
                     VDFEHVAHKGISNITPEDVAVAQELGYVIKLVGDIQETTSGIAAEVSPTFLPKNHPLA
                     SVNGVMNAVFVESIGIGQSMYYGPGAGQKPTATSVMADIIRIVRRLKDNTIGKAFNEY
                     SRPLQLAAPSDVKSEYYFSIDAPDKNGKMLRLAEIFNSEEISFKQILQQAADGETARL
                     VIVTHEMSKTQLENVTDKLSKETDFTVLNTFKVLGE"
     gene            2375..3298
                     /locus_tag="U1335_000640"
     CDS             2375..3298
                     /locus_tag="U1335_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEM5231146.1"
                     /translation="MKHSRRARRSRTQKKQLVPMLFGIALLVVTLLSIFLIFLKQPSK
                     QQNDSKASTVETTTSSSVMTSESSEVQTEIIWEQQTEPIKLPILMYHAIHVMAPEEEA
                     NANLIVDPTTFESHLKALQDAGYYTLSPEEAYKVLTENVLPAGKKVVWLTFDDSLWDF
                     YSYAYPLLKQYQMKATNNVITGFTEYGQAGHLTLEQIKEMQTAGLSFQGHTVNHPDLE
                     YSSIEDQTNELTSSKAYLDSQLNQETIAIAYPGGRYSADTVALTEQAGYKLGVTTNNG
                     LASASDGLLSLNRVRILPTTTAEGLLSEISY"
     gene            complement(3515..5323)
                     /locus_tag="U1335_000641"
     CDS             complement(3515..5323)
                     /locus_tag="U1335_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000857079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231147.1"
                     /translation="MKNKSVFTRVWDYLRRYQSSVFLAVFLKTISAVMNALEPFVLGL
                     IITELTKNLLDIANGVEGAQINVSYIAIMLGLYALRALMYEIGAYGSNYFMTKAVQGA
                     TKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
                     LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLT
                     GFNVLKLYGREEISTEEFRQITADLQKVGFKASFMSGLLMPLVHGFSNIAYVVVALLS
                     GLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSSLERIFSVLDELDEE
                     DANALELTESLTGQVSFEQVEFGYSEDKPLIRNFNLDVQPGEMVAIVGPTGAGKTTLI
                     NLLMRFYDVTTGSIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDA
                     TDEEIVEAAKAANVDHFIRTLPGGYNMEMNQESSNISQGQKQLLTIARALLADPAILI
                     LDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQIIEQGN
                     HESLLADKGFYYNLYQSQFSQSNTLRKSKADVVDLI"
     gene            complement(5332..7068)
                     /locus_tag="U1335_000642"
     CDS             complement(5332..7068)
                     /locus_tag="U1335_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002286381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231148.1"
                     /translation="MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGI
                     TKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKLTTNIVKDIRNDLYEKIQDYSHH
                     EYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
                     VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERF
                     ESVNEEYTDISKKLFNLTGLTEPLFVQIIIAMIVAIVWFALAPLQTGSLQIGDLVAFI
                     EYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNEDGITETDTRGYLEF
                     ENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRIL
                     VDGVDVRRYNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAK
                     EFIESKEEKFDTHLAEGGSNLSGGQKQRLSIARAIVKQPDIYIFDDSFSALDYKTDAI
                     LRARLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNEIYREIA
                     NSQLNRQSLTEE"
     gene            complement(7144..7386)
                     /locus_tag="U1335_000643"
     CDS             complement(7144..7386)
                     /locus_tag="U1335_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000379626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEM5231149.1"
                     /translation="MDMIENLIIAIVKPLISQPDSLTIKIVDTPEFLEYHLDLDKSDI
                     GRIIGKKGRTISAIRTIVYSVPTSDKKVRLVIDEKE"
     gene            complement(7408..7680)
                     /gene="rpsP"
                     /locus_tag="U1335_000644"
     CDS             complement(7408..7680)
                     /gene="rpsP"
                     /locus_tag="U1335_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002884675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEM5231150.1"
                     /translation="MAVKIRLTRMGSKKKPFYRINVADSRAPRDGRFIETVGTYNPLL
                     AENSVTLKEERVLEWLAKGAQPSDTVRSLLSNAGVLKKFHEQKFSK"
     gene            complement(7805..8113)
                     /locus_tag="U1335_000645"
     CDS             complement(7805..8113)
                     /locus_tag="U1335_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HEM5231151.1"
                     /translation="MKNIMEARKRVEEMEKIFNRQLELNQSLSDSLAQLNQEQSTYLQ
                     LLDYYQSQTYMEDLDLSNKGHFNGIPCGVLSEDGVYNLLFDRTNLASQLRELADMLEQ
                     "
     gene            complement(8113..8760)
                     /gene="pcp"
                     /locus_tag="U1335_000646"
     CDS             complement(8113..8760)
                     /gene="pcp"
                     /locus_tag="U1335_000646"
                     /EC_number="3.4.19.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016398107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyroglutamyl-peptidase I"
                     /protein_id="HEM5231152.1"
                     /translation="MKIIVTGFDPFGGEPINPALETIKSLPKTIAGAEIILVEIPTVF
                     DKAADVLEEKMAEHLPDAVLCIGQAGGRVDLTPERIAINQDDARIPDNEGQQPIDRTI
                     REDGQPAYFSTLPIKAMVEAIHRIGLPASVSNTAGTFVCNHLMYQALYLAEKQFPKTK
                     AGFLHIPFLPEQVVDKPGLASMSLNDIVRGVEVAIGAIVEYRDKEDIKKGGGSTH"
     gene            complement(8757..9512)
                     /locus_tag="U1335_000647"
     CDS             complement(8757..9512)
                     /locus_tag="U1335_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5231153.1"
                     /translation="MIVTTSLGMDEGLVYRARLIASELGIEYKERKKQSVRKMLGTYE
                     AVLVLYKDKLILEQRGGQVLFFHPDTAMLRIKSGRDPLLELLGKEKQSIIDCTMGLGS
                     DSIVLASAGHRVTALESSKLVHFIVSRGLQDFDSGLQEVNRAMKSIQTIWTDSLTYLK
                     GQIDKSVDVIYFDPMFSEEIKESQNLSGLSTLADRSRLTEEIVSEAKRVAGKKLIIKA
                     HFRDQVFEEFGFKRHVRPNQKFHYGEIILEEEI"
     gene            complement(9576..12755)
                     /gene="carB"
                     /locus_tag="U1335_000648"
     CDS             complement(9576..12755)
                     /gene="carB"
                     /locus_tag="U1335_000648"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019803305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEM5231154.1"
                     /translation="MPKRTDIKKIMVIGSGPIIIGQAAEFDYAGTQACLALKEEGYSV
                     VLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPTLGGQTGLNMSMEL
                     SKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESMIVTTVEEALEFAA
                     EIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERSIAGFKEIEY
                     EVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDASLSIIRALK
                     IEGGCNVQLALDPHSFKYYVIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLTLDEM
                     VNPVTGTTYAMFEPALDYVVAKIPRFPFDKFEKGERRLGTQMKATGEVMAIGRNIEES
                     LLKACRSLEIGVYHNEMPELSQVTDDQLVEKIVKAQDDRLFYLSEALRRGYTVEELAQ
                     LTKIDLFFLDKLLHILEIEQELATNFDNIDLLKKAKKYGFADRKIAELWGRTESYIRQ
                     LRTEYKIVPVYKMVDTCAAEFESATPYFYSTYEWENESIRSEKESVLVLGSGPIRIGQ
                     GVEFDYATVHSVKAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDL
                     EKPKGVIVQFGGQTAINLAEPLAKAGIPILGTQVADLDRAEDRDLFEKALKDLGISQP
                     PGQTATNEEEALEAARKIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEH
                     PVLVDSYIVGRECEVDAISDGKDVLIPGIMEHIERAGVHSGDSMAVYPPQTLSKEVQA
                     TIADYTKRLAIGLNCIGMMNIQFVIKDETVYVIEVNPRASRTVPFLSKVTDIPMAQVA
                     TKLILGQSLAELGYQDGLYPESNQVHVKAPVFSFTKLAKVDSLLGPEMKSTGEIMGSD
                     TTLEKALYKAFEASYQHLEEFGNVVFTIADEDKEEALSLARRFHELGYGIFATTGTAK
                     FLVENGLSVTPVGKLGEVDNHDIPSLVRAGKIQAIINTVGKKRVADGDGQVIRSSAIE
                     GGIPLFTALDTAEAMIKVLESRSFMTQAI"
     gene            complement(13266..14345)
                     /gene="carA"
                     /locus_tag="U1335_000649"
     CDS             complement(13266..14345)
                     /gene="carA"
                     /locus_tag="U1335_000649"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEM5231155.1"
                     /translation="MSKRRLILEDGTIFEGEAFGADIDVTGELVFSTGMTGYQESITD
                     QSYNGQILTFTYPLVGNYGINRDDFESIKPTCKGVVVSEWARRASNWRNQMTLDEFLK
                     AKKIPAISGIDTRALTKIIRQHGTMKATLANVGDSVEHLTDQLRATVLPTNNIQQVST
                     KTAYPAPGVGRSVVLVDFGLKHSILRELAKRDCNVTVVPYDTTAEEILALHPDGVMLS
                     NGPGNPDDVPEALEMIRGILGKIPIFGICMGHQLFAKANGATTYKMKFGHRGFNHAVR
                     EIATGRVDFTSQNHGYAVAREDLPECLMITHEEINDKSVEGVRHKYHPGFSVQFHPDA
                     APGPHDASYLFDEFMELMDSVKKGQ"
     gene            complement(15046..15969)
                     /locus_tag="U1335_000650"
     CDS             complement(15046..15969)
                     /locus_tag="U1335_000650"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002889464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEM5231156.1"
                     /translation="MTITNGKVSLKHLVTMETLSNEEVLGLIQRGIAFKRGEKVELDR
                     KYYASNLFFEDSTRTHKSFEMAELRLDMGMIDFDARTSSVNKGETLYDTILTMSALGV
                     DICVIRHSEVDYYKQLIDSPTIQTSIVNGGDGSGQHPSQSLLDLMTIYEEFGTFEGLK
                     IAIAGDITHSRVAKSNMQILKRLGAEIFFAGPEEWYAEEFDVYGQHLNIDDIVETVDV
                     LMLLRVQHERHDGDGGFSKETYNRLHGLTEERYKRLKDTAIVMHPAPVNRDVEIDDQL
                     VEAPKSRIVPQMQNGVFVRMAILEAIVNGKA"
     gene            complement(16025..16546)
                     /gene="pyrR"
                     /locus_tag="U1335_000651"
     CDS             complement(16025..16546)
                     /gene="pyrR"
                     /locus_tag="U1335_000651"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HEM5231157.1"
                     /translation="MKTKEIVDDMTMKRAITRITYEIIERNKNLENIVLAGIKTRGVF
                     IAKRIQERLKQLEGVDVPLGELDTKPFRDDVKVEEDTTSMTADVNDRDVILVDDVLYT
                     GRTIRAAIDNIVSLGRPARVSLAVLVDRGHRELPIRADYVGKNIPTSRSEEIIVHMAE
                     IDGQDSVLLVEGA"
     gene            complement(16753..17400)
                     /locus_tag="U1335_000652"
     CDS             complement(16753..17400)
                     /locus_tag="U1335_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Pr6Pr family membrane protein"
                     /protein_id="HEM5231158.1"
                     /translation="MKNQSLLFYSRCLLAALAITGTALEIIKYGIGMLMYYTVQSNLL
                     VSLFAVYMVYAMSKSVDLQTSRFLRIKAAVTMSIMITCVVYHFMLAPLADDFWRLENL
                     LCHYIVPLYFLLDTLIVDRQQQYKWFDPIWWTLLPVLYMIFGLVNGLFIKIPIPDAKD
                     SPFAYFFLNVPKYGWTYVLTYAGVIFVAYLVCGFLLAGLKSINLKTSLSFGKNSQ"
     gene            complement(17448..17786)
                     /locus_tag="U1335_000653"
     CDS             complement(17448..17786)
                     /locus_tag="U1335_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002920966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEM5231159.1"
                     /translation="METLPNCPKCNSEYVYEDGALLVCPECAYEWNPADVAEEESGPV
                     AIDANGNRLADGDTVTLIKDLKVKGAPKDLKQGTRVKGIRIVAGDHNIDCKIDGFGAM
                     KLKSEFVKKI"
     gene            complement(17867..18760)
                     /locus_tag="U1335_000654"
     CDS             complement(17867..18760)
                     /locus_tag="U1335_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM5231160.1"
                     /translation="MEVRVEIGDIRLDKALSDLTDLSRSVANEQIKAGQVLVNGQPKK
                     AKYSVQVGDVLTYQIPEVEEIDYVAEDIPLEIVFQDEDVAVVNKPQGMVVHPSAGHTS
                     GTLVNALLYHVKDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDDAHTKLAAELKDKKS
                     LRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTAKGKESVTRFQVLERFGDYTLV
                     ELTLETGRTHQIRVHMAYIGHPVAGDEAYGPRKTLKGHGQFLHARTLGFTHPRTGEVV
                     EFTAEAPAIFQEALEKLRKAE"
     gene            complement(18744..19208)
                     /locus_tag="U1335_000655"
     CDS             complement(18744..19208)
                     /locus_tag="U1335_000655"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001226252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HEM5231161.1"
                     /translation="MRKIGFPFLMVVLIGLDQFVKAWTVANIELDTVTEFIPGLMSLA
                     YLRNYGAAWSILQNQQWFFTIVTIAAVTGLIWYYVKQIKGNLWTLFSLSLMIAGALGN
                     FIDRLRLGYVVDMFHLDFISFPVFNVADMCLNVGVGILFICIMKEESNGSKS"
     gene            complement(19201..20115)
                     /locus_tag="U1335_000656"
     CDS             complement(19201..20115)
                     /locus_tag="U1335_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM5231162.1"
                     /translation="MNIQQLRYVVAIANSGTFREAAEKMYVSQPSLSISIRDLEKELG
                     FQIFSRTSSGTFLTQKGMEFYEKAQALVKGFDQFEHLYLQPEEGEKTFSISSQHYDFL
                     PPLITEFSRSHPQYPHFRIFESTTVQILDEVAQGYSELGIIYLNERNTKGIMQKLDKL
                     HLQAVDLSAFQTHIYLREDHPLTKKAEVDPADLVGLPTVRFTQEKEAYLYYSENLIDT
                     SDSSVVFDVTDRATLNGILERTDAYATGSGYLDDESVNGITVIPLKGKVDNRMVYVKR
                     ANDELSSCAKDFIETMQAYFDKKKDENA"
BASE COUNT         5994 a         4729 c         3763 g         5721 t
ORIGIN      
        1 ttttgtaatg gagaatggaa tgcaccaaaa aggagttccc ttcctaccgc atatagtagc
       61 gatggcgaac tccaataaaa taaacatgtt tagttttgca aatgatagat tctcactatc
      121 tatacaatag caatcccttt ggtatcaact tgaaggcggt ggacagttcc gtctagattt
      181 agttcctcta atgctagaac aatagcgtcc tccctatctt tgggcgctaa taccatcact
      241 gttggaccgg cacctgataa gtaggttgca taggctccca actcctgtgc agtttgcttg
      301 attggacaaa actccttaac aagtagctga cggaatggtt catggaacat atctgactga
      361 atggcttttc ctgccttttc caaatcacct gccatcaaac tggcaacagc aacgtttgca
      421 atggcactag cagccactgc tttcttgtac cccatctgag aaggcagtac acctcggctt
      481 tcaaccgtac gcagtgggta gtttggaata aaggcaacaa aacttgcttc tgggaattct
      541 gttacaactg cctgtactct cttattaaca tagctagaga tgactaaatt accaaaaatc
      601 gctggggcta cattatcagg atgtccttca atttctgtag ctttgagcaa tttttcatcc
      661 gctgtcatat tcaaacctgc taattgatta gccaattcga taccagctac gataacggaa
      721 ctggatgaac ccaaaccacg tgccaaggga atatcactaa gcattctgat acgatgcggc
      781 tgcaatcctt tttcaatctt taaagctgtc ttgatcaaaa gattgttctt gtctgatgga
      841 acatgttcaa gattgtgctc aatcacccat tcatcagtct cttcaaatac ttcaatcgtt
      901 agatatttcg aaagggcaac acctactgaa tcaaatcctg gaccgatatt agctgaagtt
      961 gctggaataa taattttcat tgcttattct cccagtactt taaaagtatt taagacagta
     1021 aagtctgttt ctttactcaa tttgtctgtt acattttcca actgagtctt actcatttca
     1081 tgggtcacaa tcactagacg ggctgtctct ccatctgcag cttgttgcag aatttgcttg
     1141 aaggaaattt cttcagaatt gaagatttct gctaaacgaa gcatttttcc atttttatca
     1201 ggcgcatcaa ttgagaaata atattcgctc ttcacatcgc ttggggctgc caattgaagt
     1261 gggcggctgt attcattgaa ggctttgccg atagtattgt ctttcaagcg acgaacgata
     1321 cgaataatgt cagccataac acttgttgca gtcggttttt gcccagcgcc cggtccatag
     1381 tacatagact ggccgatgcc gatagattcg acaaatacag cattcatcac accattcacg
     1441 cttgcaagtg gatgattttt cggtaggaag gttggagata cttcggcagc aataccagag
     1501 gtagtttctt gaatatcacc tacaagtttg atgacatagc ccaattcttg tgccactgct
     1561 acatcttctg gcgtgatatt tgaaatacct ttgtgtgcta cgtgttcaaa atcaactgtc
     1621 atcccgaaag caaattgact gaggataaca gccttgtaag ccgcatcaat cccctcaacg
     1681 tcatttgttg ggtcagattc tgcatagcca agttcctgtg atgtttgaag agctttttcg
     1741 taagtccagc cttcatcaac catcttagtc aacatgaagt ttgaagtacc attcaataca
     1801 cctaggatac gagtcacctt atcagcagcc aaagagttaa ccaaggtacg caagattgga
     1861 ataccacctg caactgcagc ttcataataa agcgcaaggc ctttctcttc agccaaggca
     1921 cgcaattcgc taccatgaac agcaagtaaa tccttattgg ctgttacaat atgcttgcct
     1981 gcttccaagg cacgtgtaat aaatgttttt gctggctcaa tacgtcccat cagctcaacg
     2041 acgatggcaa tttcctcatc agctaaaatc tcgtcaatat ttgtcacaaa atgatagtca
     2101 tgacctgcag ccaagagacg gtctttttct gcttcatcct tgaccaaaac cttagcaact
     2161 tcaatactat catgcgcggc tttctctatt ttttcctggt tttcttctaa taaaaatggc
     2221 acaccactcg caacggttcc aaatcctaat aatcctatct taactaccat gtgctctcct
     2281 ttaaaatgta tttctcccat tataacaaat attctgacta tttggcaaaa aatttgttat
     2341 aattgtttta atatatgatt acggagataa gataatgaaa cattcaagaa gagcccgtcg
     2401 aagccgcaca caaaagaaac aacttgtgcc aatgctattt ggtatcgcat tattagtagt
     2461 gactctacta tctatttttc taatctttct aaaacagcct tctaagcagc aaaatgattc
     2521 caaagcttca acggtagaga caacaaccag ttcgagtgtt atgacttcag aaagtagtga
     2581 agtacaaaca gaaatcattt gggaacaaca aactgaacct atcaaacttc caatcctcat
     2641 gtatcatgcc attcacgtaa tggctcctga ggaagaagct aatgcgaatc ttatcgtaga
     2701 tccaacgact ttcgaaagtc atctaaaagc attgcaagat gcaggttact atactttatc
     2761 acctgaagag gcttataaag tattgacaga aaatgtcctt cctgctggca aaaaggttgt
     2821 ctggctaacc tttgacgata gcctctggga tttttatagt tatgcctacc cattgcttaa
     2881 gcaatatcaa atgaaggcaa ccaacaatgt cattacagga tttactgaat acggacaagc
     2941 agggcacctt actcttgaac aaatcaagga aatgcagacc gcagggctct ccttccaagg
     3001 gcataccgtc aaccaccctg atttagagta tagttctatc gaggatcaaa caaatgaact
     3061 tacttcctct aaagcctatc ttgacagcca attaaatcag gaaaccatcg ctatcgccta
     3121 ccctggtgga cgatactcag cagatacagt agccttaact gaacaagctg gctacaaact
     3181 tggtgtgact actaacaacg gcttggcttc tgctagtgac ggattactga gtctcaatcg
     3241 tgtccgcatc ctcccaacca ctaccgctga ggggctatta tccgaaattt cctattaatt
     3301 ttcacaaaca tgtatatgag aaaactccct gtcactgaca agggagttcg ttttatgtat
     3361 actcaatgaa aatcaaaatc aggctagctc caaaggtttg gggagccttt ggaggttgga
     3421 aacaaagttc gcttctccaa gagcagatag tccccctact actttcgcgt cttcaggtag
     3481 taggctgaaa aaatccacag gatcttttca ctcatcaaat caagtcaaca acgtctgctt
     3541 ttgattttcg aagagtatta gattgactaa actgactttg ataaagatta taatagaaac
     3601 ctttgtctgc caaaagactt tcatggttac cttgttcgat aatctgccca tctttcaaga
     3661 ccaaaatctt atcagcttcc tgaatggtag ataagcgatg agcgatgacg aaacttgtcc
     3721 gccctttcat caaccgtttc atggcctttt gaatcaagag ttctaaacgg gtatcaactg
     3781 aagaagtcgc ttcgtcaaga atcagaatag caggatccgc caacaaggca cgcgcaatgg
     3841 tcaaaagctg tttctgacct tgggaaatat tgctggattc ctggttcatt tccatattat
     3901 aaccgccagg cagggtacgg ataaagtggt caacgttggc agctttagca gcttctacaa
     3961 tttcctcatc cgtcgcatcc aggcgtccaa aacgcaggtt ttccttgatg gtcccttcat
     4021 agagccaagc atcctgcaag accatgccaa attgactacg gtaggattga cgtgaaagat
     4081 ttcgaatatc ctgaccatcc actttgatag aacctgttgt cacatcgtag aaacgcatga
     4141 gcaagttgat aagagtagtc ttacctgccc ctgttggacc aacgatggcc accatctcac
     4201 cgggttgaac atccagatta aagttacgga taagcggctt gtcttctgaa tagccaaatt
     4261 cgacctgctc aaagctaact tgtcctgtca gactttctgt caactctagt gcattggcgt
     4321 cttcttcatc aagctcatct aagactgaaa agatgcgttc aagggaggat ttggcagact
     4381 gcaactgggg tgccaactgg gtcaaggttt ggactggctg agaaatctgc cagacgtatt
     4441 ggacgaaggc ctgcatatta ccgaccgtca atgtgcctgc aagaactttc aatccagata
     4501 gcagggcgac gacaacatag gcgatatttg agaagccgtg aactagaggc atgagcaaac
     4561 cagacatgaa actagccttg aaaccaactt tctgcaaatc tgcggtaatc tggcgaaact
     4621 cttctgtaga aatttcttca cggccgtaaa gtttgagaac gttaaaacca gtcagatttt
     4681 cttggacaaa gccgttcaaa cgacctaggg catcagcctg ctgcttgaaa tatggctggg
     4741 atttgcccat gacaaactta gaaccaaaat aggtcactgg aaccaaggtt acgactacaa
     4801 gtgctaggga tacatccaac cagaaacaca tgaaaatggc tagagagagg gtcagaacgg
     4861 cattgactag ctgtaggaag ctctgttgca gagcattcga aacagtttcc acatcgctgg
     4921 taaaacgccc cagcaggtca ccatactggt gcttgtcaaa ataagatact ggaatcttgt
     4981 taattttgtg gctcaagtcc tgacgcaatt ccttggttgc tccttgcact gcttttgtca
     5041 taaaatagtt ggaaccatag gcaccaattt cgtacatgag ggcacggagt gcgtatagac
     5101 caagcatgat ggcgatatag gaaacattta tttgcgctcc ctctactcca ttagcaatat
     5161 ccaacagatt cttggtcaat tctgtgatga taagccccag tacaaagggc tccaaggcat
     5221 tcatgactgc actgatggtc tttagaaaaa cggctaaaaa tacagaagat tggtaacgac
     5281 gcaaatagtc ccaaacacga gtaaatactg atttattctt cataattcct cctattcttc
     5341 tgtcagagat tgacggttaa gctgagaatt ggcgatttct cgataaattt cattgctttc
     5401 catcaattca ttgtgggtac cgcgaccaac aatttcacct tcgttcagca cgataatctg
     5461 gtctgcatcc ataatggtcc cgacccgctg ggccacaatt agcaccgtcg cattctccgt
     5521 cacttccttc aagcgagccc gcaaaatggc atccgtctta taatccaagg ctgagaaaga
     5581 atcatcaaaa atgtaaatat ccggctgttt gacaatagca cgtgcaatgg acaaacgttg
     5641 cttttgcccg cctgataggt tgcttccgcc ctcagctaga tgggtgtcga atttttcttc
     5701 cttactctcg ataaactcct tagcctgagc cacatccgtc gcatcatgaa gttctgcaag
     5761 actagcatcc atcttaccgt actttaagtt ttccgcgata gttccggtaa atagcagagc
     5821 tttctgcgga ataaagccaa tcttgctgcg gagtgccttt agattgtagc gtctgacatc
     5881 cacaccgtcc accaagatac gaccaagtgt cacatcatag aaacgtggaa tcaagttgac
     5941 caaggaagac ttaccagaac cagtcgaacc gataaaggca atggtttcac caggcttagc
     6001 cttaaatgaa atattgtgga gaacaggcga ttccgtttca ccagggtagg caaaagttac
     6061 attttcaaat tccaaataac cacgagtatc tgtttcagtt atgccgtctt cattcttaga
     6121 aatagagata ggcatgtcca agacttcctg aatccgttgg ctcgataccg acatacgtgg
     6181 atacatgtta aacaagttag caaagagcaa gaaagagaaa agcgcgtgga aactatattc
     6241 gataaaggct accaaatcac cgatttgcag actgcctgtt tgcaaaggag ccaatgcgaa
     6301 ccagacaatg gccacaatca tagcaatgat aatctggaca aagagaggct ctgtcaatcc
     6361 agtcagatta aagagctttt tggaaatatc ggtatattcc tcattgaccg actcaaagcg
     6421 ctcctcttga aactcctcac gagtaaaggc acgaataacc cgcaagccca tgagattttc
     6481 acgaacatat tggttgatcg tgtccaaacg tttttgttgc ttttcagaaa gaggacgagt
     6541 tttggttgcc acgtagaaaa taacaaaaac cagaaacggc atggctactg ctactgtcca
     6601 ggccaagctc ggactggtta ccaaggtcat gatgacagaa gcaatcatca tcaagggtgt
     6661 aataatacct agtttcaaca ccatttcaga gaattgcatg agaacaaaag catcatttgt
     6721 catacgagca actagagaag aaacaccaat ctgctcatat tcgtgatgag aatagtcctg
     6781 aattttctca tacagatcat ttcgaatatc tttgacgata tttgtagtca attttccagc
     6841 tgcataggca agtgtcactc gaccaacaat cccgagcagg acaattaatc ccatcatccc
     6901 cgcccagaaa tagagctgac taacatcatt ctttgtaatt ccttggtcaa tcatcctagc
     6961 caaaaaagtc ggcaacccca agtttaccac tacaaacaag aaggccccca acaagtctaa
     7021 ggcaatccac ttaggatatt ttttcaaata ggtccaaatc agattcatct tttctccctt
     7081 tctacatgtt aaaaaggggc tatgcccctt tgtctaagtt aaaagccacc aaacggtgac
     7141 tttctattct ttctcgtcga tcactaaacg aactttttta tcacttgttg gaacagaata
     7201 gacaatcgtt ctgattgcag aaattgtgcg tccttttttc ccaatgatac gtccaatatc
     7261 agatttatcc aaatccaaat gatattctaa aaattcaggt gtatcaacaa ttttaattgt
     7321 caagctatca ggctgtgaaa tcaaaggttt cacaatcgca ataatgagat tttcaatcat
     7381 gtccataagt gttctcgctt actgttctta tttagagaat ttttgttcgt ggaatttctt
     7441 caatacgcca gcgtttgaaa gaaggctacg aactgtatca gatggttgtg caccttttgc
     7501 caaccactca agtacacgct cttctttaag agttactgag ttttcagcca aaagtgggtt
     7561 gtaagtacca acagtttcga taaaacgacc atcacgtggt gcacgtgagt ctgcaacgtt
     7621 gatacggtag aaaggtttct ttttagaacc catacgagtc aaacggattt ttactgccat
     7681 tttaaaatat tctcttttct ttgtattttt attcggtgaa atagcagagc tatttagcac
     7741 atgttctatt ataccacact ttagcagtgt gtcaagaaaa aaacttgaca ggttttaaaa
     7801 aattttattg ttcgagcata tctgctagtt ctctcagttg acttgctaaa tttgtacggt
     7861 caaacagtaa attatagact ccatcttcac tcaatactcc gcaaggaata ccattgaaat
     7921 gacccttatt agataaatca agatcttcca tataggtttg gctctggtaa taatctaata
     7981 actgtaaata agtcgattgt tcctggttaa gttgtgccag actatcggaa agggactggt
     8041 tcagctctag ctgtctgtta aatatttttt ccatttcctc tacacgtttt cttgcttcca
     8101 taatattttt catcagtgtg tactaccacc acccttttta atatcctctt tatccctata
     8161 ttcaacaatc gctcctatag ctacttcgac tcctcttaca atatcgttta aagacatgga
     8221 agccagtcct ggcttgtcta caacctgctc tggcaagaag ggaatatgga gaaagcctgc
     8281 cttagtcttt ggaaattgct tctccgccaa gtaaagagct tgatacatga gatggttgca
     8341 gacaaaggtc ccagcagtat tagaaacaga agctggaagc ccaatcctat gaatcgcttc
     8401 aaccattgct ttgatgggta aggtggagaa ataagcaggc tgaccatctt ctcgaatcgt
     8461 tctatcaatc ggctgttgcc cttcattgtc tggaatgcgt gcatcatctt ggttaatggc
     8521 tatacgctca ggagttaaat caactcgccc accagcctga ccaatacata gtaccgcatc
     8581 aggtaaatgt tctgccattt tctcctctaa aacatccgca gccttgtcaa aaacagtcgg
     8641 aatctctaca agaataatct ctgcaccagc aatggtctta ggtagagatt tgattgtttc
     8701 caaggctggg ttaataggct cgccaccaaa gggatcaaag cctgttacga tgattttcat
     8761 atttcctcct ccaaaataat ttctccgtag tgaaattttt gattgggtct gacatgacgt
     8821 ttaaagccaa attcttcaaa gacctgatct cgaaaatgag cctttattat caatttcttc
     8881 ccagctactc gtttagcctc agatacaatt tcctccgtta aacgacttct gtcagccaaa
     8941 gtagacaagc cagaaagatt ttgtgattcc ttgatttctt ctgaaaacat gggatcaaag
     9001 taaatgacat caacagactt atctatttgc cctttcaaat aagtcaaact atctgtccaa
     9061 attgtctgga tagatttcat ggctcgattg acctcttgca gtccactatc aaaatcctgt
     9121 aaaccccgac tcacaataaa gtgcactagc ttagaacttt ccaaggctgt cacccgatga
     9181 ccagcacttg ctaacacaat gctatcagat cccaagccca tagtacagtc tattattgat
     9241 tgtttttctt ttccaagtaa ttctaaaagc ggatctcttc cagacttaat ccgcaacatg
     9301 gcagtatctg ggtggaaaaa taaaacctgc ccacccctct gctctagtat caatttatcc
     9361 ttataaagaa ccaagacagc ctcgtaggta cctaacattt ttctaaccga ctgcttcttt
     9421 ctttccttgt attcaatccc cagttcactg gcaataagtc tagccctata gaccagcccc
     9481 tcatccatcc caagactagt tgttacaatc attttcatac tcttcagtat atcaaaaaat
     9541 caggacgaac tcaaagctca tcctgatagt atcttctata ttgcctgtgt catgaagcta
     9601 cggctctcca acaccttaat catagcttct gctgtatcaa gggctgtaaa gagtggaatt
     9661 cctccttcaa tagcagagct tcgaatgact tgaccgtcac catctgccac ccgtttttta
     9721 ccaaccgtat tgataatagc ctgaatctta cctgctcgaa caagacttgg aatatcatga
     9781 ttatcaactt cacctaattt tcctaccggt gttactgaca aaccgttttc aacaagaaac
     9841 ttagctgttc cagtggttgc aaatatacca taacctaatt cgtggaatcg acgtgctaaa
     9901 ctcagggctt cttctttatc ttcatcagcg attgtaaaga caacatttcc gaattcttct
     9961 agatgttggt agctcgcttc aaaagcctta taaagtgctt tttcaagcgt tgtatcagat
    10021 cccataattt cacccgtaga cttcatctct ggacccaaca aactgtcaac tttagctaat
    10081 tttgtgaatg agaaaactgg tgccttgaca tgcacttgat tgctctcagg ataaagaccg
    10141 tcttggtaac ccagttccgc aaggctttgt cccaaaatca atttggttgc aacctgagcc
    10201 attggaatat ctgtgacttt ggacaagaat ggcaccgtac ggctggcccg aggattgacc
    10261 tcaatcacat ataccgtttc atccttgatg acaaactgga tattcatcat accgatacag
    10321 ttgagaccga ttgccaagcg tttggtgtag tctgcaatgg tcgcctgcac ctctttagat
    10381 aaggtttgtg gcggataaac tgccatcgag tcaccagagt gaacccctgc gcgctcgatg
    10441 tgttccataa taccaggaat caagacatcc ttaccatctg aaatagcatc cacttcacac
    10501 tcacgaccga cgatgtaaga atccaccaaa actgggtgct ctggcgaagc cttgaccgcc
    10561 gttctcatat aagaacgtaa atcttcttca ttttcgacaa tctccatagc acgaccgccc
    10621 aaaacatatg atggacgaac aagtaccggg aaaccaattt tgcgggccgc ttcaagagct
    10681 tcctcttcgt tggttgcggt ttggcctggt ggctgtgaaa tccctaggtc tttcagggct
    10741 ttttcaaata aatccctgtc ttcagctcgg tctaaatctg ccacctgcgt tcccaagatt
    10801 ggaatacctg cttttgccaa tggctctgcc aaattgatgg ccgtctggcc accgaactga
    10861 acgataaccc cttttggttt ctcaaggtca atcacattca agacatcttc caaggttaac
    10921 ggctcgaagt aaagcttgtc cgaaaccgag aagtctgttg acactgtttc agggtttgag
    10981 ttcataatga tggcttcgta acctgccgct tgaattgctt taacagaatg caccgtcgca
    11041 tagtcaaact ccacgccctg tccgatacga attggaccag aacccagcac caaaacggat
    11101 tctttttccg aacggatgga ctcattttcc cactcataag ttgaatagaa ataaggtgta
    11161 gcactttcaa attcagccgc acaggtgtct accatcttgt aaacagggac aattttgtac
    11221 tctgtccgca gttgacgaat gtaggattct gtccgtcccc agagttccgc aatcttgcgg
    11281 tctgcaaaac cgtatttctt ggcttttttc aataaatcaa tattatcaaa attcgttgcc
    11341 aattcctgct cgatttctaa gatatgaagc agcttatcaa ggaagaaaag atcaatcttg
    11401 gtcaactgag ccaattcttc tactgtatag ccacgtcgaa gggcttctga aagatagaat
    11461 aaacgatcat cctgtgcctt gacaatcttt tcaaccaatt ggtcatctgt cacttggctg
    11521 agttctggca tttcattgtg gtaaacaccg atttctaaag aacggcaggc cttgagcaga
    11581 ctttcttcga tattacgccc aatggccatg acctctccag ttgccttcat ctgcgttcca
    11641 aggcgacgct cccctttttc aaacttatca aatgggaaac gtggaatttt tgccacaacg
    11701 tagtcaagtg caggttcaaa catggcatag gttgttcctg taacagggtt caccatttca
    11761 tccaaggtca agccaaccgc aatttttgct gccaatttgg caataggata acctgtcgct
    11821 ttcgatgcca aggcagagga acgcgataca cgaggattga cttcgatgac atagtatttg
    11881 aaactatgcg gatccaatgc caactgcaca ttacaaccac cttcaatttt gagagcacga
    11941 ataatgctga gactggcatc acgcaacatc tggttttcaa tatccgaaag cgtctgcgtt
    12001 ggggcaaata cgatagaatc tcctgtatga attcccacag gatcaaagtt ttccatgtta
    12061 catacgacca aggcattgtc agctgcatcg cgcatcactt cgtattcgat ttccttgaaa
    12121 ccagcaatcg aacgctcaat caaacactgg gtcaccggtg acagtttcag accattttct
    12181 gctatttcac gcagttcttc ttcattggca cacataccac cgccagtccc tcccaatgtg
    12241 aaggctgggc gaacaatgac aggatagcca atttcagcag caaattccaa agcttcttca
    12301 actgttgtca caatcattga ctcaggaata ggctgattga ggtcttccat gagttgtttg
    12361 aagaggtcgc ggtcctctgc ctgatcaatt gcagacagtt tagttcccaa caactcaact
    12421 ccaagctcat ctaaaatacc agccttagac aattccatgg acatgttgag accagtctga
    12481 ccaccaaggg ttggtaagag agcatctgga cgctccttcc gtaaaatccg tgtgacaaat
    12541 tcaagcgtaa tcggctcaat ataaaccttg tctgctattt ccttgtctgt cataatggtc
    12601 gcagggtttg aattgaccaa gacaacacta tagccttctt ccttcaaggc caaacaagcc
    12661 tgagtcccag cataatcaaa ctccgcagcc tgaccgataa taatcggacc agacccaatc
    12721 accataattt tcttaatatc cgtacgtttt ggcataatgt atgatacaaa gcccgttaag
    12781 aggacaaagc gaaaatagga aacgcgacgc tgatgcttca agcatcaaga cgacgtttat
    12841 ctttttcgca cagtctttag ggcgtgttcg aataagaaac tcgaacctgt accttctcct
    12901 ttctattttc tatctctccg aatagaatta aataatagac cgacgtgaga aaatggattc
    12961 gacattaatc cattttcgag ctagtgcaag ggatagcctg acctccatag aggcaggcgt
    13021 agggaaatga gttgctcgca accattgatc tgtcccttgc ctttctattc gtcgcctctc
    13081 tgagcgacat taaataagat aagtccgacg tttagaatct caattcgata ataattgaaa
    13141 ttctaagcta gtgtcagagt tagcaaaggt cccattggac tttgcgtaga aggacacatg
    13201 cgttagcatg aagtccgact tgctctgacc gtcgcagtaa ggtttagctc aatagtagtt
    13261 aaaccttact gccctttttt aaccgaatcc atcaattcca taaattcgtc aaacaaatag
    13321 ctggcatcat gtggaccagg tgcagcatct gggtggaatt gaacagagaa acctggatgg
    13381 tacttatggc gtaccccttc cactgatttg tcgttgattt cctcatgcgt aatcatcaaa
    13441 cactctggta aatcttcacg agccactgca taaccgtggt tctgactggt aaaatccact
    13501 cgaccagtcg caatttcgcg aacagcatgg ttaaaaccac gatggccaaa cttcatcttg
    13561 taagttgtag caccattggc ctttgcgaag agttggtggc ccatacagat accaaatatt
    13621 ggaattttcc caagaatccc acgaatcatt tctagcgctt ctggaacatc atccggattt
    13681 cctgggccgt ttgatagcat aacaccatca ggatggagag caagaatttc ttcagcagta
    13741 gtatcataag gaacaactgt cacattgcaa tcacgcttgg ctaactctct aagaatagaa
    13801 tgtttcaatc caaaatcaac caaaacaaca ctacgtccaa ctccaggtgc aggataggct
    13861 gtttttgtcg atacttgctg gatgttgttg gttggcaaaa cagtcgctct caattgatca
    13921 gtcaaatgct caacggaatc accaacattt gccaatgtcg ccttcatagt accgtgctga
    13981 cgaataattt ttgtcaaggc gcgtgtgtca attccagaaa ttgctggaat tttcttagcc
    14041 tttaaaaatt catccaaagt catctggtta cgccagttac ttgctcgacg agcccactca
    14101 ctaacaacca ctcccttaca agtcggtttg atcgactcga aatcatcacg gttaatcccg
    14161 taatttccta ccaagggata ggtaaaggtt aaaatctgac cattataaga ctggtccgtg
    14221 atagattcct gataacctgt catcccagtt gagaaaacca actcaccagt cacatcaata
    14281 tcagcaccga aggcctcccc ttcaaaaata gtgccatctt ccaaaattaa acgtcttttt
    14341 gacataatct atgatacaaa gcctgttaaa aggacaaagt gaaaatagga aattcggcgc
    14401 cgacgctata ggcgtcaagt cgatatttat ctttttcaca cagtccttag ggcgtgttcg
    14461 aataggaaaa caagatcata ctcgaacctg tatcttctcc tttctatttt ctatctctcc
    14521 ggatagaatt aaataatagt ccgacgccgt aaggtttagc tcgatattag gtaaacctta
    14581 cggctagtgt cagagctagc aaaggtccca taggactttg cgtaggagga cacatgcgta
    14641 agcatgaagt ccgacttgct ctgaccgacg tgagaaaatg gattcgataa taatccattt
    14701 tcgagctagt gcaaggaata gcctgacctc catagaggca ggcgtaggga aatgagttgc
    14761 tcgcaaccat tgacctgttc cttgcctttc tattcgtcgc ctctctgagc gacattaaat
    14821 aagataagtc cgacgtttga aaactaaagt aatatcgact ttagttttca aactagtgca
    14881 agggatagcc tgacctccat agaggcaggc gtagggaaat gagttgctcg taaccattga
    14941 cctgtccctt gcctttctat tcgtcgcctc tctgagcgac attaaataag ataagtctaa
    15001 caaatttcta actgctcagt tctaaggtac ctgaacagct tacttttaag ccttgccatt
    15061 gacaattgct tccaaaatcg ccatccggac aaatacacca ttttgcattt gagggacaat
    15121 acgtgatttt ggcgcctcta ccaattgatc atcaatttct acatcgcggt taacaggggc
    15181 cggatgcata acaattgcag tatctttcaa gcgtttgtaa cgctcctctg ttaaaccatg
    15241 caaacggtta taagtttctt tagaaaaacc accatcacca tcatgacgct cgtgttgtac
    15301 acggagcaac atcagtacat ctaccgtttc cacaatatca tcaatattca aatgctgacc
    15361 atagacatca aattcctcag cataccactc ttctggtcct gcaaagaaaa tctcagctcc
    15421 cagacgcttc aaaatttgca tattggactt agcaacccgt gagtgtgtaa tatcacctgc
    15481 aatggcaatc ttcaagcctt caaaagttcc aaattcttca taaatagtca tcaaatcaag
    15541 tagggattgg cttgggtgtt ggcctgaacc atcaccacca ttgacaattg aagtctgaat
    15601 ggtaggacta tcaatcaatt gcttgtaata atccacttcc gagtgacgaa tcacgcagat
    15661 gtctacccca agtgccgaca tggtcaaaat ggtatcatac aaggtttcac ctttattgac
    15721 tgagctggta cgagcatcaa agtcaatcat tcccatatcc aaacgaagct ccgccatttc
    15781 aaaagactta tgcgtccgag ttgaatcctc aaagaaaagg ttagaagcat agtacttccg
    15841 atccaactct accttttcac cgcgtttaaa agcaatacca cgttgaatga gtcccaatac
    15901 ttcttcattt gagagggtct ccattgtaac caagtgtttg agtgaaactt taccatttgt
    15961 aattgtcatg atgataccta cctttatgat ctagatgtag aatgagaatt tgtaaacgaa
    16021 gcgactatgc accttcaacc aggaggacag aatcctgacc atcgatttca gccatgtgaa
    16081 cgatgatttc ttccgaacgg ctagttggaa tattcttccc aacataatct gctcgaatag
    16141 gcaactccct gtgtccacga tccacaagta cagctaaact aacacgagct ggacggccca
    16201 aggacactat gttgtcaata gcagcacgaa tagttcgtcc tgtataaagc acatcatcta
    16261 ccaaaataac atcacggtca ttcacatcag cagtcatgct tgtcgtatct tcttcgactt
    16321 ttacatcatc acggaaaggc ttagtatcca attcacccaa tggaacatcg acaccctcta
    16381 actgtttcag tctttcttgg atacgttttg ctatgaatac cccacgggtt ttaatacccg
    16441 ccagaacaat attttccaaa ttcttgttcc gctcgataat ttcataagtg atacgggtaa
    16501 tagcccgttt catggtcata tcgtcaacga tttcttttgt cttcataaag acctccaaaa
    16561 aatatagaaa aaagtcccct ttacacaagg agactatgaa aatataggct agcatttaaa
    16621 gactaacctg cttaacacgt tgctccttgt ctgcctctct ggacaggttt taaaggattt
    16681 attaagcaga gtatagcata aaatctcagc cttgacaatt tttttctgaa aaaatataga
    16741 aattatcgga ttttactgag aattttttcc aaaagacaat gaagtcttaa ggtttatgga
    16801 ttttagtccc gccaatagaa aaccgcagac tagataggcg acaaagatga ctccagcata
    16861 agtcaaaaca taggtccaac catacttagg gacattgaga aagaaataag caaaaggact
    16921 gtccttagca tctgggattg gaatttttat aaaaagacca ttcactagac caaaaatcat
    16981 gtagagaaca ggcaaaagcg tccaccaaat cgggtcaaac catttgtact gttgctgacg
    17041 atctactatt agggtatcta acaaaaaata taagggaaca atataatggc agagtagatt
    17101 ttcaagtcgc cagaaatcgt ctgccaaagg tgccaacata aagtgataga ctacacaggt
    17161 aatcatgata gacatggtta cagcagcctt tatccgaaga aaacgtgacg tctgtaaatc
    17221 cacactttta ctcatggcat agaccatata gacagcgaac agagatacca ataaattaga
    17281 ttgtaccgta taatacatga gcatgccgat accgtattta atgatttcta gagcagttcc
    17341 cgtaatcgct aaagccgcca acaaacacct gctataaaat aataaacttt gattcttcat
    17401 actatccttt caaaaacagg aaaagactgg ttaaccagtc ctctctctta gattttctta
    17461 acaaattcag attttaactt catggcaccg aaaccatcaa ttttacaatc aatattgtga
    17521 tcgcctgcaa cgatacggat gcctttaaca cgtgtacctt gtttaaggtc cttaggtgca
    17581 cctttcactt tcaaatcttt gataagcgtc acagtatcgc cgtccgccaa acgattaccg
    17641 ttagcatcaa ttgcaacagg tccactttct tcctcagcta catctgctgg gttccattcg
    17701 taagcacact cagggcaaac caagagggca ccgtcttcat agacatattc agaattacat
    17761 tttggacaat ttggtaaagt ttccattctt actctcctta acatttttca tgttctagta
    17821 tagcatttgt tgaaaaaatg ggcaagatga taaggttttc atactattat tcagccttgc
    17881 gcagtttttc aagtgcctcc tgaaaaatag ctggcgcttc tgccgtaaat tcaacaacct
    17941 cgccagttct cggatgggta aatccaagcg ttctggcatg aagaaattgc ccatgccctt
    18001 ttagtgtttt ccttgggccg taagcttcat cacccgcaac cggatgacca atataagcca
    18061 tgtggacacg aatttggtga gttcgtcctg tttccaaggt caattccacc aaagtgtagt
    18121 caccaaaacg ctctaaaacc tgaaaacgtg tcaccgattc tttccctttg gccgtcaccg
    18181 cttgtttctt gcggtctttt tcagaacgac caatcggcgc ctcaattact ccgcgatcgt
    18241 ttggtagatt gccgtgtaca atggcccaat acttacgaag ggatttctta tctttcaatt
    18301 cagcagcaag ctttgtatgg gcatcatcgt ttttagcaat catgagcaag ccagatgtgt
    18361 ccttatcaat ccgatggaca atacctggtc gcaagacacc attgatgcct gacaaatctt
    18421 ttacgtgata aaggagagca ttaactaacg ttccagacgt gtgaccagcc gacggatgaa
    18481 cgaccatccc ttgtggttta tttacaacag caacatcctc gtcctgaaag acaatctcta
    18541 aaggaatatc ctcagcaaca tagtcgattt cttctacttc tggaatttga taggttagga
    18601 catccccaac ctgcacacta tatttagctt ttttaggctg tccattgacc aaaacctgac
    18661 cagccttaat ctgctcattt gcaaccgaac gagacaaatc cgtcaaatcc gacaatgcct
    18721 tgtccaaacg aatgtcacca atctcaactc ttacttccat tactctcttc tttcataata
    18781 caaataaaca aaattccaac accgacattc agacacatat ccgccacatt aaaaactggg
    18841 aaactgataa aatccaagtg aaacatgtcc accacatatc ccaatctaag acgatcaata
    18901 aaattcccaa gagcaccagc aatcatcaaa gacaggctaa acaaggtcca caggttaccc
    18961 ttgatttgct tcacataata ccaaatcaaa ccggttacag ctgcgattgt tacaatcgtg
    19021 aaaaaccact gctgattttg taaaatcgac caggcagcac cataatttct tagataagct
    19081 aagctcatca atcctggtat aaattccgtt accgtatcta attcaatatt ggcaactgtc
    19141 caagctttta caaactggtc caaaccaatt aatactacca tcaaaaatgg aaatccaatt
    19201 ttacgcattc tcatccttct tcttatcaaa atatgcctgc atggtttcaa taaagtcttt
    19261 ggcacaagaa ctaagttcat cattagctcg tttaacgtag accatgcgat tgtctacctt
    19321 tcctttgaga ggaattacgg taatgccatt gacactctcg tcatcaagat aacccgaacc
    19381 agttgcatag gcatccgtac gctccaaaat tccattcaga gtagcacggt ctgtcacatc
    19441 aaacacaacc gaggaatccg acgtatcaat caagttctcg gaataataaa gataagcctc
    19501 tttttcttga gtgaaccgta cggtaggtag acctaccaaa tctgctggat caacctcagc
    19561 tttctttgtc aaaggatgat cttcacgaag gtagatatga gtctgaaatg cagacaaatc
    19621 tacagcttgc aagtgaagtt tatccaattt ctgcatgatt ccttttgtat ttctctcgtt
    19681 caaataaata ataccaagct cgctataacc ttgagcaacc tcatctaaaa tctgtactgt
    19741 ggtcgattca aaaatgcgaa aatgagggta ctgcgggtgg ctacgagaga actccgtaat
    19801 cagtgggggg agaaaatcat aatgctgact tgaaattgaa aaagtcttct caccttcctc
    19861 aggttgcaaa tagagatgct caaactgatc aaagccctta actaaagcct gagctttctc
    19921 atagaattcc atcccttttt gtgtcaaaaa agttcctgaa ctagttcggc taaaaatttg
    19981 aaaacctaac tctttttcca aatcacgaat ggaaatggac aaactaggct gggaaacgta
    20041 cattttctct gctgcttccc gaaaagtacc actattggca atggctacaa cgtagcgtaa
    20101 ttgttgaata ttcatacctg atacctctta aaactgcttc taccattata tcaaaaaaag
    20161 caagaatttg ccgaactctt acgttttcat aaatagacta ttcttct
//
LOCUS       DASGAC010000024        19396 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.024, whole genome shotgun sequence.
ACCESSION   DASGAC010000024 DASGAC010000000
VERSION     DASGAC010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 19396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19396
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.024"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(18..1040)
                     /locus_tag="U1335_000657"
     CDS             complement(18..1040)
                     /locus_tag="U1335_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001871253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
                     /protein_id="HEM5231163.1"
                     /translation="MSNTHSTRNSSYSHLSATERGEIVAYLKMGKKPIEIARLLGRHR
                     STICREIRRGSVDQVQDKNGKRTYFSAYFADSGQRVYETNRQKCSYLKLNDCSARFIK
                     QLGDALKANIRLHSVDCFVQTYKASHPEEVVPSTKTIYRYIKEGLLAIKPIDLPKMVS
                     IRKRSKKVTKTNRKTLGKSIEERPECINDRSEFGHWEIDLVLGKKTKGEAVILTLVER
                     QTRYALGVKLEDKQSHTINSAVRHLTSLYPIASITADNGAEFSLLSDLEAVDVYFAHP
                     YSSHERGTNENFNGLLREYVPKGVSLNSLTSEELESYITAINERPRRLLQYQSSKFLF
                     GLAQTA"
     gene            1244..2473
                     /locus_tag="U1335_000658"
     CDS             1244..2473
                     /locus_tag="U1335_000658"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231164.1"
                     /translation="MKKTHITLAAVAALATAVAVAPTAQADVQSKFELINPKVKEPSV
                     EEKINAKLADAASDYQKATEYQKGAEKQVKEAKTALEAAQKLEKEKVAEIDKATVEAL
                     KLEEAKVTKAKETVTATEKAIAEQNEIIKVAREKTQELNLTAGLSKDPSAAEKAKAEI
                     AVEEDKIKAAEETITVLNKQLETDKEAVKTAEEAVVEWKEERAKSDAAAKKVFTDATA
                     KAQKALTAAETEVSEWKVVIEDFGKVLASAKLESIKNGLTNDQIAQIIADAQAQIKVD
                     TVATSVYRLYNSGLKVHLYTTDANEYAVLAERGWSQEGVAFKSAKEGTPVYRLYNAGL
                     KVHLYTTDANEYAVLAGRGWTQEGVAFNSVKDGVPVYRLYNAGLKKHLYTTDANEYKV
                     LATRGWTQEGVAFYSAK"
     gene            2878..3831
                     /locus_tag="U1335_000659"
     CDS             2878..3831
                     /locus_tag="U1335_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5231165.1"
                     /translation="MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNATYVADQH
                     ETDLVVNNNKTLKQLDLTKEEWRRAYQFLLIKANQTEPMQYNHQFTPDSIGFILSFLV
                     DQLVPTQKVTVLEIGSGTGNLAQTILNASQKDLDYLGIEVDDLLIDLSASMADVMQAE
                     ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSL
                     KYLEKDGFAILLAPNDLLTSPQSDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFV
                     LQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI"
     gene            3882..5069
                     /locus_tag="U1335_000660"
     CDS             3882..5069
                     /locus_tag="U1335_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000047536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEM5231166.1"
                     /translation="MSKTIAINAGSSSLKWQLYQMPEETVLAAGIVERIGLNDSISTV
                     KYDGKKESEVLDIPNHTVAVKILLEDLLKHNIIAAYEEITGIGHRVVAGGEIFKESAV
                     IGPKEVEQIEELSALAPLHNPAHVAAIRAFEEVLPEVLNVAVFDTAFHTTIPKHAYLY
                     PIPQKYYTDHKVRKYGAHGTSHYYVAHEAAKVLGRPIEELKLITAHIGNGVSITANYH
                     GQSVDTSMGFTPLAGPMMGTRSGDIDPAIIPYLIANVDELKDAADVVNMLNKQSGLFG
                     VSGFSSDMRDIESGIQAHNPDAVLAYNIFIDRIKKFIGQYLAVLNGADALVFTAGMGE
                     NAPLMRNDVVEGLSWFGIELDPEKNVFGNYGDISTAESKVRVLVIPTDEELVIAREVE
                     RLK"
     gene            5382..5933
                     /locus_tag="U1335_000661"
     CDS             5382..5933
                     /locus_tag="U1335_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate family ECF transporter S component"
                     /protein_id="HEM5231167.1"
                     /translation="MEKKIPKLTVQLLAAIAVTLALVMIVENYFSIRISDTLQVQFTF
                     IPNTILGAIAGPVWAAVFAAISDPVFVLFSGQTVLFTWILIEAVSAFIYGWFFYRKPL
                     DTKNKADWLYVAGVVVLIQVVISFIMTPIALHFHFGTPWIALYSSRFIKAIFEIPLRI
                     VVTMLVLPSLQKIPELAKLMGIK"
     gene            5989..7245
                     /locus_tag="U1335_000662"
     CDS             5989..7245
                     /locus_tag="U1335_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEM5231168.1"
                     /translation="MNYQETRQWLSSRPASDLENGVARVNWILERLDNPQFQVPTIHF
                     VGTNGKGSTLNALQSILRSSDYTVGRFTSPSIIDFREQIVFEQEMISEEDFARIVTDL
                     QPLIEDLDQTAGLDAISEFEIVVVAMFVYFAHYQRPDILLVEAGMGGLQDATNVLAPL
                     AVVCPSIGLDHQAFLGETHAAIARHKVAVLRERVPLLYATDQPEVVAVFEEQARQLQS
                     PTYAVGREIILENSRAGFAVSSPLGRVEELKVLMQGRHQEVNAALAVTTAQLISPAFP
                     KITNETIRHGLSQAIWPGRLELIRPNLMIDGAHNNESIAILTQLLEEKYVDRDIEILF
                     AAINTKPVDQMLSQLSQFGPVSVTTFDDFRAVQLEDYPAGYERVQTYQEWLEQADLDN
                     PKKLYLITGSLYFITHVRKYVLEKLF"
     gene            7386..10994
                     /locus_tag="U1335_000663"
     CDS             7386..10994
                     /locus_tag="U1335_000663"
                     /inference="COORDINATES: protein motif:HMM:TIGR04320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEC10/PgrA surface exclusion domain-containing
                     protein"
                     /protein_id="HEM5231169.1"
                     /translation="MKKNKYIYGTIAATTAITLATVGASTVSADTQYGIVLNRVTGEW
                     QTVNRTTGEIVKSEPNGTYSTYDEANAGLSSWLETQASTVETPVTETTVAEAPQTSAD
                     IKPAIDAQQAVVDATAQDATNAQADADAANQDVTTAQAEVDTATQAVKDAEANTVNAT
                     PENIAANQADQAANLADQTANATETDEVNAEIASQTQTVADAQVAVDTAQAEKDQADS
                     AVTAAETDVKSAQDALSGTGLAEAQATLDQATKDVTTAQDNVTTATTAVDTAKKADAD
                     RRTAIDAATTDLAVKTDAVDTAKAKLTTATEAKSITETNLLKAEEDLQKASKNFDNFR
                     EQTILLEAKKVAEEAKSAYQDVKTKVEDTQGELDKQKEYQNSLVSAVNRATENLNQAI
                     EEESKLQEKLATAQEELSKQRSLLEEATSDLSEKTLALSKTEEAYKEKQNELEQLKEN
                     LVGKDLTGIYRVELSPSLTRWSLRPGRPEIVITSEDSEEFKQLTSEQQSLYRQRKQET
                     DALYKKAAIIFGDKRMGQVDGSIQVAPESDKDRLVDIHNMSFEDYVEINELGARILND
                     LRYQTSQNAGESDTFAPSIITTGSIEISKNIVEAYSNLPKHPRGHVLSILDKFGGPSI
                     VENYYSAGRYSVQGQGEKKSIYSMYHLKQALITSITNSTLNDAHYYDGHAKLNMDYKS
                     GTVGFGFSITVGGVLQVHTFSRIAIGPYGTKEENDSDKYNYTNERYLNSLIPRAQANQ
                     EKIDDLREVLEKAKSELLELQNKLANSQQIVQEKQLTVELASQKVEELATRTDTVAMA
                     RQELESQENLLKDSKSSILTLSNDLERLRSDLIEKESLQEQAQVKYHQLEEQVSNEKV
                     KLQSLLVQAQAALTVAQTASDAAKAELTKASADYATALEAKTAAEKTLADATATPLQT
                     QVAENNLRLAEIALQNAEARKADAQKAVDNFSANLADKKAALDTAKADLATAQATATA
                     KATVLETAKAELAKQQGTLDSLNKDKAALLAEKDRLVEEAKALAEELDGYLNAPTRLA
                     EAQATLTEKQTALVDAQAKAETVQEKLETVTAKLAEEQAKLAELQAEYNKLKDLEDKA
                     KDNVIATLPDGTIVAVPKDAPTAVEKPAINIDAVKDAITKGQDVTVVDGEVVVTNPQA
                     GVTVTQTATGEKVTYSRVERAKTLPNTGEQTSLLALAGLTVLSSLGLVSARRRKQG"
     gene            11164..11316
                     /locus_tag="U1335_000664"
     CDS             11164..11316
                     /locus_tag="U1335_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018165791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative holin-like toxin"
                     /protein_id="HEM5231170.1"
                     /translation="MPMGNSSKSDGKGSVLLTAFEVVQTILSFSGFTVALIGLCYKIF
                     KDNDKK"
     gene            complement(11649..12710)
                     /gene="pepA"
                     /locus_tag="U1335_000665"
     CDS             complement(11649..12710)
                     /gene="pepA"
                     /locus_tag="U1335_000665"
                     /EC_number="3.4.11.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl aminopeptidase"
                     /protein_id="HEM5231171.1"
                     /translation="MTLFEKIKEVTELQSLPGFEGQVRNHIRQKITPHVDRIETDGLG
                     GIFGIKDTAVEDAPRILVAAHMDEVGFMISQIKPDGTFRVVELGGWNPLVVSSQAFTL
                     QLQDGRTIPAISGSVPPHLSRGANAPGMPAIADIIFDAGFANYDEAWAFGVRPGDVLV
                     PKNETILTANGKNVISKAWDNRFGVLMVTELLESLSGQALPNQVIAGANVQEEVGLRG
                     AHASTTKFNPDIFLAVDCSPAGDIYGDQGKIGDGTLLRFYDPGHIMLKNMKDFLLTTA
                     EEAGVKFQYYCGKGGTDAGAAHLKNHGVPSTTIGVCARYIHSHQTLYSMDDFLEAQAF
                     LQAIVKKLDRSTVDLIKNY"
     gene            13159..13443
                     /locus_tag="U1335_000666"
     CDS             13159..13443
                     /locus_tag="U1335_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4651 domain-containing protein"
                     /protein_id="HEM5231172.1"
                     /translation="MKKKKTALLAGLLGAGVLTASAQFYRKIQEDRKKAQALQEVRDF
                     FADLGEIATVYVDETASTRDQLIGGVVMEAGQVFLFENTQGSIQYREEEK"
     gene            13440..13760
                     /locus_tag="U1335_000667"
     CDS             13440..13760
                     /locus_tag="U1335_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEM5231173.1"
                     /translation="MIFPTNLEEVAALIEDGKPTVFLFVTTWCGDCHYIKPHLPAIEE
                     AFPDLRFVQLDRDDFMPLAQEWAILGIPSLVVLENGKEIGRFVDKNRKTKEEIMNFLS
                     GLGR"
     gene            13805..14761
                     /locus_tag="U1335_000668"
     CDS             13805..14761
                     /locus_tag="U1335_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1002 domain-containing protein"
                     /protein_id="HEM5231174.1"
                     /translation="MKKSLGKILLAPVVLGLSLSLAPLVQAEIQTDVINEKWGKPTLV
                     YGGGLSDAQATEVNNLFGISDVNNVSRQVVVGADMDQYLGTSGADTASLYSSVLVQKQ
                     DAGKGVVVDIKTPQNITLITETQYANAAITAGATDVLIDVAAPIQVTGESALTGVYKA
                     LAANGETVDTARTEVAQQELETVNEVATAHTGDTNFDSSALDKAVAEIKTALADYKKS
                     NGQVASESDINTMINDVLANNGLENVITADEISKLVTFAKAYQETSAIDSAEVAAQLN
                     QFKQQAEQQISEAYKNLQDSGILEKIGAFFENLWKGLTGLFA"
     gene            14780..15403
                     /locus_tag="U1335_000669"
     CDS             14780..15403
                     /locus_tag="U1335_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011284429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4479 and tRNA-binding domain-containing
                     protein"
                     /protein_id="HEM5231175.1"
                     /translation="MIFTYNKEHVGDVLMVIVAEDKGQPVQFERKGRVARVFLEDTGK
                     TVAWNIFEASSLVEIAGNGQVFLTDEQVATLNAELAKEGFTESLVNDNAPKFVVGQIA
                     ELVPHPDSDHLNICQVNVGDKTVQIVAGAPNAAQGLKTIVALPGAMMPSGSLIFPGKL
                     RGENSFGMMCSPRELALPNAPQVRGIIELDDSAVVGEAFDPVKHWKG"
     gene            complement(15435..16214)
                     /locus_tag="U1335_000670"
     CDS             complement(15435..16214)
                     /locus_tag="U1335_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2785 domain-containing protein"
                     /protein_id="HEM5231176.1"
                     /translation="MKEFLMEKIQTSQPYADAELAWLLENIGHPDPAIRDELVYASFC
                     HIFLEGLVTREQAQSLLQFSQETNPLSLESSTLKRSFTCLLYCLLLSVDNEPESIYHV
                     FLSTNDRELLFQQALDYLAIENDWSGYDEKLGWIHTVAHGADFLLAASCHDQFPAEKS
                     KEVWQTIVTCLTKQSKVFSAGEEIRLAQIPVYLLLNEKVSSQELTEWISKLDFPNQEP
                     VDYFRWLNLQHFLSSLYFQLKSQQALTEEIEQAIEGKIEPA"
     gene            16269..16664
                     /locus_tag="U1335_000671"
     CDS             16269..16664
                     /locus_tag="U1335_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000282448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEM5231177.1"
                     /translation="MYNKVILIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGER
                     EADFLNIIFWGKLAETLVSYGSKGSLISIDGELRTRKYEKDGSNHYVTEILGQSFQLL
                     ESRAQRAMRENNTGDDLADLVLEEEELPF"
     gene            complement(16893..17180)
                     /locus_tag="U1335_000672"
     CDS             complement(16893..17180)
                     /locus_tag="U1335_000672"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231178.1"
                     /translation="MKFFRELKTDYLESRFSAHESFAEWFLKRKLGFWGSGKELDWSK
                     RVRLPTPAQLIRSDLECKTRTKLPINHCAEMLTPDLRRGVLPFAQPPIYSG"
     gene            17378..17659
                     /gene="groES"
                     /locus_tag="U1335_000673"
     CDS             17378..17659
                     /gene="groES"
                     /locus_tag="U1335_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009730535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEM5231179.1"
                     /translation="MLKPLGDRIVVKIEEKEQTVGGFVLAGASQEKTKEASVLAIGQG
                     IRTLNGDLVAPAVTVGDTVLIDAHAGLEVKDGDQNVHIIREADILAIVE"
     gene            17671..19293
                     /gene="groL"
                     /locus_tag="U1335_000674"
     CDS             17671..19293
                     /gene="groL"
                     /locus_tag="U1335_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940029.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEM5231180.1"
                     /translation="MAKEIKFAADARESMVRGVDILADTVKVTLGPKGRNVVLEKAYG
                     SPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREG
                     LKNVTAGANPIGIRRGIEAAVATAVEALKAQASPVSNKAEIAQVAAVSSRSEKVGEYI
                     SEAMERVGTDGVITIEESRGMETELDVVEGMQFDRGYLSQYMVTDNEKMVAELENPFI
                     LITDKKISHIQDILPLLESILQTNRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKA
                     PGFGDRRKAMLEDIAILTGGTVITEDLGLDLKDATIEALGQAAKVVVDKDGTTIVEGA
                     GNPEAIANRVAVIKSQIEGTTSEFDREKLQERLAKLSGGVAVIKVGAATETELKEMKL
                     RIEDALNATRAAVEEGIVAGGGTALVNVIDSVAKLELTGDDETGRNIVLRALEEPVRQ
                     IAYNAGYEGSVIIDKLKNSELGTGFNAATGEWVNMMDAGIIDPVKVTRSALQNAASVA
                     SLILTTEAVVANKPEPVAPAMPQGMDGMGMGY"
BASE COUNT         5955 a         3810 c         4407 g         5224 t
ORIGIN      
        1 actagagatt ccagaggtta agctgtttgg gctagcccaa acagaaattt cgaggattgg
       61 tattgaagaa gtcgtctggg gcgctcattg atggcagtga tataactttc tagttcttca
      121 gaggttagtg aattaagtga gactccttta gggacatatt ctctgaggag accattgaag
      181 ttctcgtttg tgcctctctc atgtgaagaa tagggatgtg caaagtaaac atcaacggct
      241 tccaagtctg agagtaaact aaactcagca ccattatctg ctgtgatgga tgcaatagga
      301 tacagactgg taagatgcct tacagcacta ttaatggtgt gggactgttt gtcttctagc
      361 ttaacgccta gcgcatagcg tgtctggcgc tctaccaagg tcaaaataac tgcttcacct
      421 ttggttttct tgccaagaac taaatcaatc tcccaatgcc caaattcaga acggtcattg
      481 atacactctg gacgttcttc gatagactta cctaaagtct tccgattcgt cttcgtgact
      541 ttcttagaac gttttctgat actaaccatc ttaggcagat cgattggttt aatagctaac
      601 agaccctctt tgatataacg ataaatcgtt ttggtagagg gtacgacttc ttcaggatgg
      661 ctggctttat aagtctgaac aaaacaatct acgctatgga gacgaatgtt agctttcaag
      721 gcatctccta attgtttaat gaacctagcg gagcaatcat tcaacttgag ataagaacac
      781 ttttgacgat tggtttcata gacacgttgc ccactatcag cgaaataggc gctgaaataa
      841 gttcgtttcc cattcttatc ctgtacctga tctactgaac cacgtctgat ttctcgacag
      901 attgtagacc ggtgacgccc cagaagccga gcgatttcaa ttggtttctt tcccatttta
      961 agataagcaa caatttcacc acgttctgtg gctgagagat gagaatagga tgagtttctg
     1021 gtagaatgag tgttggacat gtttatctgc tttctatact gagttgggga attctagtat
     1081 gtcagacaat catgtctttt ttgttgcact tcattttaca acacgggacc taaaaaaaat
     1141 ttaaaaagat gataaaaatc cttgacaaaa tgtgtaaggg ttagtataat gatggtaacg
     1201 ttccatgtag aacgaatata aatatttata ggagtttttt atcatgaaaa aaacacacat
     1261 cacacttgca gcagttgcag ccttggcaac agcggttgca gttgcaccta cggcgcaagc
     1321 tgacgttcaa tctaagtttg aattaatcaa tccaaaggtt aaagagccgt cagttgaaga
     1381 aaaaattaat gccaagttgg cggatgcggc aagcgattac caaaaagcta ctgagtacca
     1441 aaaaggtgct gagaagcagg taaaagaagc taagactgct ttagaagcgg cacaaaagct
     1501 tgagaaagag aaagttgctg aaattgacaa ggctactgta gaagctttga aacttgaaga
     1561 agctaaagta actaaagcta aagaaactgt tactgcgaca gagaaagcaa ttgctgaaca
     1621 aaacgaaatt atcaaagttg ctcgcgaaaa aacacaagag ttgaacctta cagcaggtct
     1681 ttcaaaagat ccatcagcag cagagaaagc taaagcagag attgctgttg aagaagataa
     1741 aatcaaagca gcagaagaaa caatcacagt attgaacaag cagttggaaa ctgataagga
     1801 agctgtgaag actgcagaag aagcagtagt tgaatggaaa gaagaacgtg ctaagtcaga
     1861 tgcagcagct aagaaagtat ttactgacgc tactgctaaa gcacaaaaag ctttgactgc
     1921 agctgaaact gaagtttcag aatggaaagt ggttattgag gattttggta aagttcttgc
     1981 atcagctaag ttggagtcaa tcaaaaatgg tttgactaac gatcagattg cacaaatcat
     2041 cgctgatgct caagctcaaa ttaaagttga cactgtagct acttcagtat accgtcttta
     2101 caactcaggt cttaaagtac acttgtacac aactgacgca aatgagtacg cagttcttgc
     2161 agagcgcgga tggagccaag aaggtgttgc cttcaaatca gctaaagaag gtactccagt
     2221 ataccgtctc tacaatgcag gtcttaaagt acacttgtac acaacagatg caaatgagta
     2281 cgcagttctt gcgggtcgtg gttggactca agaaggtgta gcattcaact cagttaaaga
     2341 tggtgttcca gtataccgtc tctacaatgc aggtcttaag aaacaccttt acacaacaga
     2401 tgcaaacgag tacaaagtac ttgcaactcg tggttggact caagaaggcg ttgctttcta
     2461 ctcagctaaa taataagtct ctttatcaac ttcagttagt agataaaaag ctaatactta
     2521 gagagaacga gattcgttct ctcatttttg atgtttaaag caatatatat ctttgtttta
     2581 aagttcctaa agccgaacgc ttgcctcttg atgtctttga ttctgattag ttctgtggta
     2641 tgatcttcgc ttttttattt ctaggctcag gaatccagag tcacttccct gactctggat
     2701 ttattccata tgagtctttc taatgtgagt ttggttgctt ttcattatag gtcatatggg
     2761 actctttttc tacactcaaa atgactccat aacctctaca gtggatttac ccactataag
     2821 aaattataga gccccttttt tggtgcaaag tctgtgaaat tttgataaga taggagtatg
     2881 aattttgaaa agatcgaaca ggcttacgac ctgctattag aaaacgtaca gactatccaa
     2941 aaccagctag gtaccaatat ctatgatgcc atgattgagc aaaatgctac ttacgtagct
     3001 gatcagcatg agacggacct tgttgtcaat aataacaaga ccttgaaaca actagattta
     3061 accaaggaag aatggcgtcg tgcctaccaa ttcctactca tcaaggccaa tcagactgaa
     3121 cccatgcagt acaatcacca gttcacacca gattccatcg gatttatcct atcttttcta
     3181 gtagaccaac tagtgccgac tcaaaaggtg acggttctgg aaattggttc ggggacaggc
     3241 aatctagctc agaccattct caacgccagt cagaaagact tggactatct tgggattgaa
     3301 gtagatgatc tcttgattga tttatcagct agcatggcag atgttatgca ggcagagatt
     3361 tcttttgccc agggcgatgc ggtacgtccg cagattttga aggaaagtca agtaattttg
     3421 ggagatttgc ctattggcta ctatccagat gaccagattg ctagccgtta tcaggtcgcc
     3481 agcccaaatg aacataccta cgcccatcat ttactcatgg aacaatccct caaatatctg
     3541 gaaaaagatg gctttgcgat tttgttggct ccaaatgatt tattgactag cccgcaaagc
     3601 gatttgctga aaggttggtt acaggagcaa gccaatattg ttgccatgat tgccctgcca
     3661 ccaaatctct ttgggaaggc tgctatggcc aagtctattt ttgtcttgca aaagaaagct
     3721 gcaagatcgt tgacgccatt tgtttatccc ttgcaaagcc ttcaagaacc agaagctatt
     3781 cagaagttca tgctcaattt caaaaattgg aagcaagaga atgcaattta agtgaaaatc
     3841 tgttatacta attaggaaaa cgctttaaaa aggggaacga tatgtcaaaa acaattgcaa
     3901 ttaatgcagg tagttcaagt ctaaaatggc aactttatca aatgccagaa gaaacagtat
     3961 tagcggcagg gattgttgag cgcatcggtt tgaacgattc catctcaaca gttaagtatg
     4021 atgggaagaa agaaagtgaa gttttagata ttcctaatca tacggttgcg gttaagattc
     4081 tcctagaaga cttgcttaag cacaacatca ttgctgctta cgaggaaatt actggtatcg
     4141 gacaccgtgt tgttgcaggt ggagagattt tcaaagaatc agctgttatt ggaccaaaag
     4201 aggttgagca aattgaagaa ctaagtgctt tggcaccact tcataaccct gctcacgtag
     4261 cagcaattcg tgcatttgag gaagtactac cagaagtttt gaatgtagct gtttttgata
     4321 cagcctttca cactacgatt ccaaagcatg cctatcttta tccgattcca caaaagtact
     4381 ataccgacca caaggttcgt aagtatggag ctcacggaac tagtcactat tatgtagcgc
     4441 atgaggcagc aaaagtattg ggacgtccga ttgaggaatt aaaattgatt acggctcaca
     4501 tcggaaacgg tgtatctatt actgccaact accacggtca atcagttgac acttctatgg
     4561 gcttcactcc tctagctggt ccaatgatgg ggactcgttc gggagatatt gatccagcga
     4621 ttattcctta cttgattgca aatgttgatg agttgaagga tgctgcggat gttgttaaca
     4681 tgttgaataa acaatcaggc ttgttcggtg tatctggctt ctcaagcgat atgcgtgaca
     4741 ttgaatcagg catccaagct cacaatccag atgcagtgtt ggcctacaat atttttatcg
     4801 accgtatcaa gaaatttatc ggtcagtatc ttgcagtttt aaatggtgca gatgcccttg
     4861 tcttcacggc aggtatgggt gaaaatgcac cgcttatgcg caatgacgta gtagaaggct
     4921 tgtcttggtt tggtattgag ttggacccag aaaaaaatgt atttggcaac tatggtgaca
     4981 tttcaacggc agaatcaaaa gttcgtgtct tggttattcc aacggatgaa gaattggtta
     5041 ttgcgcgtga agtggagcgc ttgaaataag aaaaacgaac tggtagtcgg agactgccag
     5101 tttctcttat agtttatacc tttagaaagg tatagttttt agcaagtggt caaaatatat
     5161 agtgtgtgat acaatagact agcaaagaaa tttgcacaga gtagatggtt tgcgtcaagt
     5221 gtatgtggat gggatgttgc cacataacga agctaatctt tgcttgtatc tgatgtctcc
     5281 tagagtagga acattggatc tggctgagag tagcgcggta aaccattgca tccgctgtcg
     5341 aatatacacg acagctccat tttgaaaaag gagcattttt tatggaaaag aaaattccaa
     5401 aactaacggt gcagttgttg gctgctattg ctgtgaccct tgccttggtc atgattgtgg
     5461 agaactattt ctctattcgg atttctgata ctttacaggt tcagtttacc ttcattccca
     5521 atactatttt gggagctatt gcgggtccag tttgggcagc tgtctttgcg gctatttcag
     5581 acccagtctt tgtcttgttt agcgggcaaa cggtcctctt cacttggatt ttgattgagg
     5641 cggtatcggc gtttatctat ggctggttct tctatcgaaa accgctagac accaagaaca
     5701 aggctgattg gctctatgtt gcaggggttg ttgtcttgat tcaggttgtg atttccttta
     5761 tcatgacacc gattgccctc catttccatt ttggaacacc ttggattgcc ctgtatagca
     5821 gtcgtttcat aaaagctatt tttgaaattc cattacggat tgtcgtgacc atgcttgtct
     5881 tgccaagttt acaaaaaata cctgaattgg ccaagttaat gggcattaaa taaaacagta
     5941 tcaagcaaca ggtcatcccc ctgttgctgc ttttgtagag agggaatcat gaattatcaa
     6001 gaaactcgtc agtggctatc tagtcgtcct gcatcagatt tagaaaatgg tgttgcacgt
     6061 gtcaactgga ttttggaacg cttggacaat ccccagtttc aagtgccgac tattcacttt
     6121 gttggtacaa atggcaaggg ttcgaccttg aatgcgttac agtctatctt acggtcttcg
     6181 gattacaccg tcggtcgctt tacctcgccg tctatcattg attttcgaga gcagattgtc
     6241 tttgagcaag agatgatttc ggaggaagat tttgcgagga ttgtgacaga cttgcagcct
     6301 ttgatagaag acttggacca gacggctgga ctggatgcca tctcggagtt tgagattgta
     6361 gtagtggcta tgtttgtcta ctttgcccac taccagcgtc ccgatattct cttggtggag
     6421 gcaggcatgg gcggtttgca ggatgcgacc aatgtccttg cccccttggc agtcgtttgc
     6481 ccgtccatcg gcttggatca tcaggctttt ttgggagaga ctcatgcagc catagcccgt
     6541 cacaaggttg ctgtcttgcg tgagcgggtt cccctccttt atgcgaccga ccagccagaa
     6601 gtggtggcag tatttgagga gcaggctcgt cagcttcaga gtccgaccta tgcggtaggg
     6661 cgggagatta ttttggaaaa tagcagagca ggctttgcag tttcaagccc tctcggccgt
     6721 gtggaagagt tgaaagtctt gatgcagggc cgtcaccaag aggttaacgc agccttagca
     6781 gtgacaacag ctcagctcat cagccctgct tttccaaaga ttaccaatga aaccatccgc
     6841 catggcttgt cccaagccat ctggccgggc cgcttagagt tgattagacc taatctcatg
     6901 attgacggtg cccacaataa tgaaagcatc gccatcctga cacaactctt ggaagaaaag
     6961 tatgttgaca gagatattga aatcctcttt gcggccatca ataccaagcc tgtggaccag
     7021 atgttgtccc agcttagcca atttggacct gttagcgtta cgacttttga cgatttcaga
     7081 gcggtacagt tagaagacta tccagcaggt tatgaacggg tgcagaccta tcaggagtgg
     7141 ttggagcagg cggacttgga caatcccaaa aaactctacc tgattacagg ctcgctatat
     7201 ttcattaccc atgtgaggaa gtatgtttta gaaaagttat tctgatatta aaatttttcc
     7261 caaaaatttt ttgaaaaact tctcaaaaat catgcaaaat acttgacaaa agccctgcta
     7321 tactagtata gcagggcttg acacttcggc caagcccttc ctattagcct aaacaggagg
     7381 aaacaatgaa aaagaacaag tatatatatg gtacaatcgc cgcaaccact gctatcaccc
     7441 ttgcaaccgt tggtgcgtct accgtatcag cagatacaca atatggtatt gttttaaacc
     7501 gtgtgacagg cgagtggcaa actgtcaatc gtaccacagg cgaaattgta aaatctgaac
     7561 caaacggtac atactctaca tatgacgaag caaacgcagg tttatcctca tggttagaaa
     7621 ctcaagcatc aactgttgaa acaccagtaa ctgaaacaac tgttgcggaa gcgcctcaaa
     7681 catcagctga tattaaacca gctattgatg cacaacaagc tgttgttgat gctactgctc
     7741 aagatgcaac taacgctcaa gctgatgcag atgcagctaa ccaagacgtt accactgctc
     7801 aagcagaagt tgatactgca acacaagcag tcaaagacgc tgaagcaaat accgtaaacg
     7861 caacaccaga aaacattgca gcaaaccaag ctgaccaagc agctaacctt gcagaccaaa
     7921 cagctaacgc tactgaaaca gatgaagtca atgctgaaat cgcatcacaa acacagacag
     7981 ttgctgacgc acaagttgcg gtcgatactg ctcaagcaga aaaagaccaa gccgatagcg
     8041 ccgttactgc tgctgaaact gatgtaaaat cggcacaaga tgcactctca ggaactggac
     8101 ttgctgaagc tcaagcaacc cttgaccaag caactaaaga tgtcacaact gcacaagaca
     8161 acgttacaac tgctactaca gctgttgata cagctaagaa agcagatgca gaccgccgaa
     8221 ctgcaattga cgcagcaaca actgacctgg cagttaaaac agatgctgtt gatacagcaa
     8281 aagcaaaatt gacgactgca actgaagcaa aaagtattac tgagacgaat ttattaaaag
     8341 ctgaggaaga tcttcaaaaa gcaagtaaga attttgataa ttttcgagaa caaacgatac
     8401 tcctagaggc aaagaaagta gctgaagaag caaagagtgc ctaccaagac gtaaagacga
     8461 aggtagaaga tacccaaggc gagctagaca aacaaaaaga atatcagaat agtcttgtta
     8521 gtgctgttaa tagagctact gagaatctta atcaagctat tgaagaagag agcaagttgc
     8581 aagaaaagtt ggcaactgca caagaggaat tatctaaaca aagatcatta ctagaggaag
     8641 ctactagcga tctatcagaa aaaacattag ccctttcgaa aactgaagaa gcgtacaaag
     8701 aaaagcagaa tgaactagag caattaaagg aaaatctggt tggtaaagat ttaacaggga
     8761 tctatcgagt tgagttatca ccaagtttaa ctcgttggag tttgcgtcct ggtagacctg
     8821 aaatagtgat aacttccgag gattctgaag agttcaaaca attgacatct gagcaacaaa
     8881 gtctgtatcg tcaacgtaag caagagacgg atgctttata taaaaaagcc gcaataatct
     8941 ttggcgataa gcggatgggg caagtagacg gttctattca agttgctcca gaatcagata
     9001 aggatcgctt agtagatatt cacaatatga gttttgaaga ctatgtggaa atcaatgagc
     9061 ttggagctcg aattctaaat gatttgcgct atcaaactag tcaaaatgct ggggaatcgg
     9121 atacatttgc accttcaatt atcacaacag gtagtatcga aattagtaag aatatcgtag
     9181 aagcatatag taacttacca aagcatccga gagggcatgt gctttccatc ttggataaat
     9241 tcggaggtcc ttcaattgta gaaaattact atagcgcggg caggtattct gttcagggtc
     9301 agggtgagaa aaaatctatt tatagtatgt atcatctcaa gcaagctcta attacctcta
     9361 tcactaattc aactcttaat gatgctcatt actatgatgg tcacgctaaa ttaaatatgg
     9421 attataagag tggaacagtt ggctttggtt tttccatcac agttggggga gtcttacaag
     9481 tacatacctt tagtagaatt gcaatcggtc catatggaac taaggaagaa aacgatagcg
     9541 ataaatacaa ttatactaac gaacgttatt taaattcact cataccaaga gcacaagcaa
     9601 atcaggagaa gattgatgac ctgagggaag tgttggagaa agcaaaatca gagctacttg
     9661 aactccaaaa caaactagct aatagtcaac agattgttca agaaaaacaa ttgacagtag
     9721 agttggcttc tcaaaaagta gaagaactgg caacaagaac tgatactgtt gcaatggcaa
     9781 gacaggagtt ggaaagtcaa gaaaacctac taaaagattc aaaatctagt attttaacct
     9841 tatctaatga tttagaacgt ttacgaagtg atttaattga aaaggaatca ttacaagaac
     9901 aagcacaggt taaatatcac caactagaag aacaggtttc caatgaaaaa gtcaaacttc
     9961 agtcgcttct agttcaagct caagcagctc tcacagtagc acaaactgca tctgacgcag
    10021 ctaaagctga attgactaaa gcaagtgctg attacgctac cgcacttgaa gcaaaaaccg
    10081 cagcagaaaa aactcttgct gatgctactg caacaccact tcaaacacaa gttgctgaaa
    10141 acaacctacg tcttgcagaa attgcacttc aaaatgcaga agctcgcaag gctgatgcac
    10201 aaaaagcagt tgacaacttc tcagcaaatc ttgctgataa gaaagctgca cttgatacag
    10261 ctaaagctga cttggctacg gcacaagcta ctgctactgc aaaagcaact gttcttgaaa
    10321 cagctaaagc tgaacttgct aaacaacaag gcacacttga tagcttgaac aaagacaaag
    10381 cagcacttct tgcagaaaaa gaccgcttgg tcgaagaagc aaaagcactt gctgaagaac
    10441 ttgatggtta tttgaacgca ccaacacgcc ttgctgaagc tcaagcaacc ctcacagaaa
    10501 aacaaactgc tcttgtagac gcacaagcta aagctgaaac tgtacaagaa aaacttgaaa
    10561 ctgttactgc taaacttgct gaagaacaag ctaaactagc tgaacttcaa gcagagtaca
    10621 acaaactcaa agaccttgaa gacaaagcaa aagacaatgt gattgcaaca cttccagacg
    10681 gaacaatcgt tgcagtacca aaagatgcac caactgctgt tgaaaaacca gctatcaata
    10741 ttgatgcagt caaagacgct attaccaaag gtcaagatgt aacagttgtt gacggtgaag
    10801 ttgtggtgac gaaccctcaa gcaggtgtca ccgtgacaca aacagctact ggggaaaaag
    10861 tgacatactc acgtgtagaa cgtgctaaga ccttgccaaa cacaggggag caaacaagtc
    10921 tgttggcact cgcaggtctg acagtattgt ctagtcttgg tcttgtaagt gcaagaagac
    10981 gcaaacaagg atagatggct aaaatgaaaa aatcttctta ctatgacagt aggaagattt
    11041 ttttggattc ctaaaagttt cggaaagact acgctattcc aacaattttt agggataaaa
    11101 tatgatatac tagatgagta gaaaagtgaa gacggtagct cttgattttc tgaaagtgag
    11161 gtgatgccta tgggcaattc atcaaaatct gacggaaagg ggagcgttct tttgacagct
    11221 tttgaagttg tgcagacgat tttaagtttc agtggtttca cagttgcttt gattggtttg
    11281 tgctataaaa tcttcaaaga taatgacaaa aaataatccg tcccccactt ttgcgcgagt
    11341 aggacggatt aaatctgtaa tacgagccac cgtcttttta acggttctac atttagagct
    11401 ggacggcaat ccagctcttt ttctattttt attataacag attacatgta aaatgcaaat
    11461 aatctgttaa tttggagatt cgtttgctat aggtttgttt cttatagtag gctcagactt
    11521 atcggtgaat accataatat gacgatacag gttagagagc gtttactgct atgttatttt
    11581 ttactaattg ggtagactca gcgatcatag gggacttctt cgctttgcat aactgtgatg
    11641 ttagttgtct aatagttttt aatcaaatca accgttgagc ggtctagctt tttaacgatg
    11701 gcttgcaaga aggcttgagc ctctaggaag tcatccatgc tatagagggt ttgatgtgaa
    11761 tggatatagc gagcgcagac accgatggtt gtcgatggaa cgccatgatt tttcaagtgg
    11821 gctgcaccgg catctgttcc acctttacca cagtagtatt ggaatttgac accagcctcc
    11881 tcagcagtcg tcaagaggaa gtctttcatg ttttttaaca tgatatgacc tggatcatag
    11941 aaacgaagta gggtaccgtc accaattttt ccttggtcac catagatgtc gccagctggc
    12001 gagcaatcaa cagcaaggaa aatgtctgga ttgaacttgg ttgtagaagc atgagctcca
    12061 cgtagaccaa cctcttcttg cacattggcc ccagcaatca cctgatttgg caatgcttga
    12121 ccggataggc tttccagcaa ttccgtcacc ataaggacac cgaagcggtt gtcccaagcc
    12181 ttagaaataa cattttttcc gttggctgtt agaattgttt catttttggg aacgaggaca
    12241 tcccccggac gaacaccgaa cgcccaagct tcgtcataat tggcgaaacc agcatcgaaa
    12301 ataatatcag caatggcagg catgccagga gcgttagccc cacgagaaag atggggaggc
    12361 actgaacctg agatggctgg aatggtacgg ccgtcctgca actgaagcgt gaaggcttgg
    12421 ctagaaacaa ccagaggatt ccagccacct agctcgacaa cacggaaagt accgtctggc
    12481 ttgatttggc taatcataaa gccaacttca tccatgtggg cggccactag gatacgagga
    12541 gcatcttcaa cagccgtatc cttgatacca aaaattccac ctagcccatc tgtttcaatg
    12601 cggtccacat gtggcgtgat tttttggcgg atatggttgc ggacttgtcc ttcaaatcct
    12661 ggtaaacttt gcaattcggt tacttctttg attttttcaa aaagagtcat tcttcttcct
    12721 ccatgacatg attattacta ttttatcatg aagagctaga cttgtcttga aaatatagaa
    12781 aaatatggat agtattgaca agaatgcttg aaatttgcta ggatagaaat gcccctcaaa
    12841 atagagagga ggtgattgct aagtgtggga agcatttatc acagtttttc ttgtaccttt
    12901 gttcgtcagt tttctaacag ttttgtttga aagatggctc aacaatcgtg acaagtaggc
    12961 cccaggggca aaagaaaacc ctcaacgctg ggaacgttgg gggcattttg attgccaagt
    13021 gttgacaaac atttatcact gtaagaccat tctatctatt tttaagtctt ttgtcaagtg
    13081 gtgagagttc ttctcagctg tcacaagtcc aatggcattt ttgggaaaaa tcctgggaaa
    13141 tatgataaaa tagtcaacat gaaaaagaaa aagacagcct tactagcagg cttattgggg
    13201 gcaggtgtgc tcaccgctag tgctcaattt taccgtaaaa tccaagaaga ccgtaaaaaa
    13261 gcacaggcct tgcaggaggt gcgtgacttt ttcgctgatt taggagagat tgccacggtc
    13321 tatgtggatg aaacagcttc aactcgtgac cagcttattg gcggggttgt gatggaggca
    13381 ggacaggtat ttttatttga aaatacccaa ggttctattc aatacaggga ggaagaaaaa
    13441 tgatttttcc aacaaatctt gaagaagtag ctgctttgat tgaagatggc aagccaactg
    13501 tttttctatt tgtgacgact tggtgtggag attgccacta tatcaaaccg catttgccag
    13561 ctatcgaaga agcttttcca gatctccgtt ttgtgcaact ggatcgagat gattttatgc
    13621 ctttagcaca agaatgggct attttaggca ttccaagtct ggttgttttg gaaaatggta
    13681 aggaaattgg tcgctttgtc gataagaatc gcaagaccaa ggaagaaatc atgaacttct
    13741 tatctggact gggtagataa attagcagag aagctctgcc atttcccaaa agaaaggaaa
    13801 gaacatgaag aaatcactag gaaaaatcct tctagcacct gtggtgctgg ggttgagttt
    13861 gagtcttgct cccttggtgc aggctgagat tcaaacagat gttatcaatg aaaaatgggg
    13921 caagccaaca ctagtctacg gtggaggttt gtcagatgcg caggcgacag aggttaacaa
    13981 tctatttggt atttcggatg tcaataatgt cagtcgtcag gtggttgttg gcgcggatat
    14041 ggaccaatat ttaggtacat ctggagcgga cacagcctct ctttactcgt ctgtcttggt
    14101 gcaaaagcag gacgctggca aaggggttgt ggtggacatc aagacgccgc agaacatcac
    14161 cttgattact gaaacgcagt atgccaatgc ggccattaca gctggtgcga cagatgtctt
    14221 gattgacgtt gcggcaccca ttcaggtgac gggagagtcc gccctgacag gtgtttacaa
    14281 ggctcttgca gccaatggtg aaacagttga taccgctcga actgaagtag ctcaacagga
    14341 gctagagaca gtcaatgaag tggcaacggc tcacacaggt gacactaatt ttgatagttc
    14401 ggccttggat aaggcagtag cagaaatcaa gacagctctt gccgactaca aaaagtccaa
    14461 tggtcaggta gcttccgaat cagacatcaa tactatgatt aacgatgttt tggccaataa
    14521 cggtttggaa aatgtcatca cagcagatga aatttctaag ctagtcacat ttgccaaagc
    14581 ttatcaggaa acctctgcta ttgattcggc tgaggttgct gcccagctca accagttcaa
    14641 gcaacaggcg gagcaacaaa tttcagaagc ctataagaat ctacaagatt caggaatttt
    14701 agaaaaaatc ggtgccttct ttgaaaatct ttggaaaggc ttgaccggtc tatttgcata
    14761 aaggagaaat gaaaaagaaa tgatttttac atataataag gaacacgtcg gcgatgtcct
    14821 tatggtgatt gtggctgaag acaaggggca gcctgttcag tttgaacgca agggtcgagt
    14881 ggcgcgtgtt ttcctagagg acacaggaaa aacagtagcc tggaatattt ttgaagcatc
    14941 aagtttggtt gagattgctg gaaatggtca agttttcctg acagacgagc aagttgcgac
    15001 cttgaatgct gaattggcta aggaaggttt tacggaaagc ttggttaacg acaatgctcc
    15061 aaagtttgtt gtcggtcaga ttgcggaatt ggttcctcat ccagacagtg accacctcaa
    15121 tatctgtcag gtcaatgttg gggacaaaac ggtgcaaatc gtagctggtg ccccaaatgc
    15181 tgcccaaggc ttgaaaacca ttgtggctct tccgggggca atgatgccga gcggtagcct
    15241 gattttccca ggaaaactac gtggtgaaaa tagctttggt atgatgtgca gtccgcgtga
    15301 attggctctg ccaaacgcac cacaagtccg tggtattatc gaattggacg actccgcagt
    15361 agtcggagaa gcctttgatc cagtaaaaca ctggaaggga tagaaaagaa gaattggtca
    15421 ggtggccaat tcttttatgc tggttcaatt tttccttcaa tagcctgttc gatttcttca
    15481 gtcaaggcct gttgtgattt gagttggaag taaagactag acagaaaatg ttggagattg
    15541 agccatcgga agtagtctac tggttcttga tttggaaagt ccagcttgct aatccattcc
    15601 gtcagctctt ggcttgacac tttttcattc agcaggaggt agacagggat ttgtgctaga
    15661 cggatttcct cgccagctga gaaaacttta ctttgtttag ttagacaagt gacaatagtt
    15721 tgccagactt ctttgctttt ttcagcggga aattgatcat gacagcttgc ggccagaaga
    15781 aaatctgctc cgtgggcaac ggtatggatc caaccgagtt tttcatcgta gccagaccag
    15841 tcattttcaa tcgccaaata atccaaggcc tgctggaaga gtagctcacg gtcgttagtg
    15901 cttaaaaata catgataaat agactctggc tcattatcga cagacagcaa aagacagtag
    15961 agcaagcaag taaaacttcg ctttagtgtg gaactctcta gggaaagagg attggtttct
    16021 tgagagaatt gcagtagcga ctgtgcttgc tctcttgtga ccaagccctc caaaaagatg
    16081 tggcaaaaac tagcataaac cagttcgtcg cgtatagcag gatcaggatg accgatgttt
    16141 tccaacaacc aagccagttc ggcatcggca tatggttggg aggtctgtat cttttccatc
    16201 aaaaattctt tcatgatttt cgctcctttt ctaatccttc tacgaataaa taagtaggag
    16261 gatataaaat gtataataaa gttattttaa tcggtcgttt gacggcccaa cctgaactca
    16321 ctcaaacacc aactggtaaa aatttgactc gtgtaacagt cgcagtcaat cgccgattta
    16381 agactgaaaa tggtgagcgt gaagcagatt tccttaatat tattttctgg ggcaaactgg
    16441 cggaaacact tgtctcctat ggtagcaagg gcagtctgat ttctattgat ggtgaattgc
    16501 ggacgagaaa atacgaaaaa gacggcagca accattatgt gactgaaatc ttaggacaat
    16561 ccttccagtt gctcgaaagt cgtgcccaac gtgccatgcg tgaaaacaat actggtgatg
    16621 acctagctga cttggttctg gaagaggagg aattaccgtt ttaaagcaat atcggtccta
    16681 agactgatgg agaatgagaa aaagtcggct atactatagt caatcctaaa tatttttcat
    16741 atctccttaa aaacaccgac gaaagttggt gttttttgct acttattttc tatatttccg
    16801 ccattctatc agcatgataa ttagagaaag taggagaact ccgtagaaga aaaagatgat
    16861 gtaacgaggg tggctaaaga aaaatatcca gactagccag agtagatagg cggttgagca
    16921 aaaggcaaga ctcctcttct caggtctggt gtcaacatct cagcgcagtg gttgattggc
    16981 agttttgttc gtgttttaca ctccaaatct gacctaatca actgtgcggg ggtgggaaga
    17041 cgaactcttt ttgaccagtc gagttctttc ccactccccc aaaagcctaa tttacgtttt
    17101 aaaaaccatt ctgcaaaact ttcatgggct gaaaatcggc tttctaggta atctgttttt
    17161 agctctctaa aaaatttcat gaatacccct taacttttta ataatagtat agcatagttt
    17221 aacaataatg aataggtaaa ttctgtctca tacttaagaa ggatttttac gaaaaaggaa
    17281 tagaattttc ttgactattt ttgaccaagt gatacaatag gaaatgtgaa ttagcactcg
    17341 gaggtaaaga gtgctaaaaa gaccaggagg taataccatg ttgaaaccat tgggcgatcg
    17401 tatcgtcgta aaaattgaag aaaaagaaca aacagttggt ggatttgtcc tagcaggtgc
    17461 aagtcaagaa aagacaaaag aagcaagtgt cctagcgatt ggacaaggaa ttcgtacctt
    17521 gaacggagac ttggttgccc cagcggtgac agttggagat actgttttga ttgatgctca
    17581 cgcaggattg gaagtcaaag acggtgatca gaacgttcac atcatccgtg aagcagacat
    17641 tttggcaatt gtagaataag aggtaagaaa atggcaaaag aaatcaaatt tgcagcagat
    17701 gcacgtgaaa gcatggtccg tggtgtcgat attttggcgg atactgtcaa agtaaccttg
    17761 ggtccaaaag gtcgtaatgt tgtcttggaa aaagcttatg gctcaccact cattaccaat
    17821 gatggtgtga ccattgctaa agaaatcgag ttggaagatc attttgaaaa tatgggtgct
    17881 aagttggtat ccgaagtggc gtcaaaaacc aatgacatcg ctggtgacgg tacaacaact
    17941 gcaactgtat tgacccaagc tatcgtacgt gaaggcttga aaaacgtaac ggcaggtgcc
    18001 aacccaattg gtatccgtcg cgggattgaa gccgcggttg caacggcagt tgaagcattg
    18061 aaagcacaag caagtcctgt atccaataaa gctgaaattg ctcaagttgc ggctgtgtct
    18121 tcgcgctctg aaaaagttgg tgagtacatt tctgaggcta tggagcgcgt gggaacagac
    18181 ggcgtaatca ccattgaaga atctcgcggt atggaaactg agttggatgt ggtagaaggt
    18241 atgcaattcg atcgtggtta tctgtcacaa tacatggtaa cagataatga aaagatggtg
    18301 gcagaacttg aaaatccatt catcttgatt acagataaga aaatttctca tatccaagac
    18361 attttgccac tcttggaaag cattcttcaa accaatcgtc cgttgttgat aattgctgac
    18421 gatgtggatg gcgaagctct tcctaccctt gttctcaaca agattcgtgg tacattcaac
    18481 gttgttgcag tcaaagctcc aggctttggc gaccgtcgta aagccatgtt ggaagacatt
    18541 gctatcttga caggcggtac agtgattaca gaagaccttg gtttggactt gaaagatgcg
    18601 accattgaag cccttggtca agctgccaag gttgtggtcg acaaggatgg tacaaccatt
    18661 gttgaaggtg ctggaaatcc agaagccatt gccaaccgtg tcgcagttat caaatcacaa
    18721 attgagggaa caacttcaga atttgaccgt gaaaaattgc aagagcgttt ggccaaattg
    18781 tcaggcggtg ttgcagttat caaagtcggt gctgctactg agactgagtt gaaagaaatg
    18841 aaactccgta tcgaagacgc cctcaacgca acacgtgccg cagttgaaga aggaatcgtt
    18901 gccggtggtg gtactgccct tgtcaatgtt atcgatagcg tagcgaaatt ggagttgaca
    18961 ggcgatgatg aaacaggacg aaatattgtc cttcgtgctt tggaagagcc agtacgtcag
    19021 attgcctata acgcaggtta tgaaggttca gttatcattg ataaattgaa gaattctgag
    19081 cttggaacag gctttaatgc tgcgactggc gaatgggtca acatgatgga cgcaggtatc
    19141 attgaccctg ttaaagtaac acgctcagct cttcaaaatg cagcttccgt agccagcttg
    19201 attttgacaa cggaagcagt tgttgccaac aagccagaac cagtcgctcc agctatgcca
    19261 caaggtatgg acggaatggg tatgggctac taagaaatag caaaatgaca cagctgaaag
    19321 gctgtgtttt ttctggtaaa ttctcaaagt aagttctagt tcccgtcctt ccagaagtta
    19381 ctttgagaaa actgca
//
LOCUS       DASGAC010000025        19308 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.025, whole genome shotgun sequence.
ACCESSION   DASGAC010000025 DASGAC010000000
VERSION     DASGAC010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 19308)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19308)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19308
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.025"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..1247
                     /locus_tag="U1335_000675"
     CDS             <1..1247
                     /locus_tag="U1335_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5231181.1"
                     /translation="LFLSSFVADLISNFGDTLYYLALMNYVLLLPDTKFALAMITASE
                     TLPILAGLFIGIWADKTKNKLDTILATLVMRVGLYALVGFLMGFAPALWVVAVVCVIN
                     FLSDLAGQYENGLYMPVSLRVVAAEDRETAMAFKMTVKNLLQIAFQASGAILIGFMSY
                     QNLAFFNAGTFLVSLAIMVGLRPAFAKLLKENPIQEVEQTETEAGLIKGIGQSIKDSY
                     QAVQNIPVLKASIITIASLNAVFTALSPLAILNMKEFSDFVIVNAGTTVALISILFSV
                     GSILGSSLGMALFKNVSLVNLLKFSTLMPVLLFSGFFLHNIYVVLAVIFVTAVTLGIF
                     NPKMSALVMNELPEDKLATVGGGIDAFCQIGMVAGQALVALMVTVLSATSISLIFLLL
                     SVGLLGYSIFTGKNTEKIVASA"
     gene            1283..2554
                     /locus_tag="U1335_000676"
     CDS             1283..2554
                     /locus_tag="U1335_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5231182.1"
                     /translation="MKKIICNKIFLFSYLADVISNFGDTLYYLALMNYVLFLPDTKFA
                     LAMITVSETLPILSGIFMGIWADRTKNKLDTILATLVIRFVLYALVGLLMGFTPALWI
                     VAVVCVVNFLSDLAGQYENGLYMPLSLRVVEAEDRETAMAFKNTVGGILMIVFRSSGA
                     ILIGFMSYQNLAFFNAGTFLVSLAIMVTLRPAFAKLLKENPIQEVEQTETEAGLIKGI
                     GQSLKESYQAIQKIPVLKASILTIAGINTVFSAISPLVILSMKEFSDFVIVNSGITLA
                     LVFNLFSVGYILGSSLGMAFFKHISLSNLLKCCTFLSVILFVGFYLHNIYIVMATILV
                     TTMTTGIINPKLYALIMNELPEDKLATINAGMGTIFNIGMLAGQALVALMVTILSVTS
                     ISLIFLLLSVGLVSYTILVGRRPKNEVVVKA"
     gene            2566..3606
                     /locus_tag="U1335_000677"
     CDS             2566..3606
                     /locus_tag="U1335_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR family transcriptional regulator"
                     /protein_id="HEM5231183.1"
                     /translation="MKLDYRDYRSEIVEKFFIPLIVTEREEPIEADFSQKEKDILKDA
                     LDIRDEIEEKLADFRQEVNQVFVWGHIFNILHSLYFYILNDGQDPKTVEEACQLILKL
                     SQAEVEDAMRTMLASENDGHREKDLSLMELLEKTDKKPADKWYWSLAIRNPLETVERS
                     VHLLDKMLPIYQPYFEQARAEREKFAQEFDIEKLYRDSKQLAMTSLDALSVENAQFFV
                     LSPWNYWFAYYGNEEFDYMKVALLASCRIDQIMLSNDELDLDDLTTALKVISDSTRYQ
                     VLVELTKPHAKSKDIAERLAITGAAVSFHTQKLINGDLLLFNTKVKDAKYSVNRDLLQ
                     QVIDKLKEDFDL"
     gene            complement(3833..4840)
                     /locus_tag="U1335_000678"
     CDS             complement(3833..4840)
                     /locus_tag="U1335_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231184.1"
                     /translation="MQNKTKPLNTSLLSLIQFIGAILVIALHCRRLFEADQLHFIQKS
                     IFSRMVVPYFMVTASFFLRRNYPSLSKQYLIRYSKQYLTWSVLYLPFYLFYLNLQEIP
                     LLYYPLALLVGLTYTGTSYQLWYMPAFLLGLVLVHFSLEKWGWRITACLACLLYLLGS
                     VETYSSYLAESALLTAFDSYKTFFFTSRNGLFYAPIFVLTGFYLADKLNHPIFQYRQK
                     NKLLVCTALLAFEATIIYLNQGYDKNFLFSLIPFTAYLVAWTLTTDLFRQKKFQFLKE
                     YASYYYFIHVIPVEISFFFLETSSLTKIQQGWLVFFITIITCQLLSWLIINTQRKSKT
                     D"
     gene            5030..5716
                     /locus_tag="U1335_000679"
     CDS             5030..5716
                     /locus_tag="U1335_000679"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEM5231185.1"
                     /translation="MKDLHAKLLADFGIDFLDLNLLETAFTHTSYANEHRLLKISHNE
                     RLEFLGDAVLQLMISKYLYQKYPDSPEGEMSKLRSTFVREESLAGFSRACGFDRFLRL
                     GKGEEKSGGRNRDTILGDAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKGNFERVTD
                     YKTALQEILQVNGEIAISYQVIAESGPAHDKTFEVEVSADQRVIGRGRGRSKKLAEQA
                     AAKNAVEARG"
     gene            5719..9252
                     /gene="smc"
                     /locus_tag="U1335_000680"
     CDS             5719..9252
                     /gene="smc"
                     /locus_tag="U1335_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HEM5231186.1"
                     /translation="MYLKSIEMQGFKSFADKTKVVFDRGVTAVVGPNGSGKSNITESL
                     RWALGESSAKSLRGGKMPDVIFSGTESRKALNYASVVVTLDNSTGFIANKQKEIKVER
                     HIYRSGDSEYLIDGQKVRLRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSKPEERRAI
                     FEEAAGVLKYKTRKKETESKLAQAQGNLDRLDDIIYELDNQVKPLEKQAQTAKKFLEL
                     DGQRKELYLDVLVAQLSLGKEKLSKKEAELESVKTELTSYYKQRSELEQENQNLKEKR
                     HRLSEQLEREQAVLLDLTKLISDLERKIEVHKLESSQNESSRQEAQARLENLLTRREQ
                     LAEQIEQKQETLAQLDSSLSSLKDDIAAVDKEISYFSEDPDQVLDHLREQYVALMQEE
                     AEASNSLTKIQQDIANQISLSESKSEDLARLQTEKQTAQEVLDKSRKSLEEADYVLRQ
                     LLESYQTKKSELDQTQTAYQAEQGRLFDLLDQLKGKQARQSSLEAILKNHSNFYAGVK
                     AVLQAAPSLGGIIGAVSEQLTFDTRYQTALEIALGGASQNVIVEDEATAKRAIAFLKE
                     KRQGRATFLPLTTIKPRQLSGLQVSLLESSEGFLGLASDLVTYQPNLDAIFQNLLGTI
                     AIFDTIDHANQAALATKFQVRMVTMDGAEIRPGGAFAGGSNRNNSTTFIKPELDALLG
                     EIAELSSQLQEQESLVAAKKTSLDQTREALETIKAEGEEARLNQQSARIHQEQAENRL
                     AQLSAQYDLQMSQVSPTILTELEEAAAKEEVNVQALNEKKLALDQQINQVRDNRDSIQ
                     ESLQKLQTQKGQLTLEQAELTSQLRFEQTDLRRLQEEKVVADKEISLLEDMIDQKLEA
                     LEDTSIEILEEQLQAASDKQNQTNQILIRLKFELEDIDGQFEDLEERLQQARTKNDDL
                     IRKQAKLEADCEQAGDKLRTLLGNLTEHFKLSFEAAQSQAKEVENLPLAEQTLKDLER
                     SIRALGPVNLDAIEQYNEVNNRLTFLNEQRTDILSARDLLLNTIHEMDDEVKERFKVT
                     FEAIRESFKQTFKQMFGGGSADLILTSPDILTAGVEISVQPPGKKIQSLNLMSGGEKA
                     LSALALLFSIIRVKTIPFVILDEVEAALDEANVKRFGDYLNRFDKESQFIVVTHRKGT
                     MAAADAMYGVTMQESGVSKIVSVKLKDVEKL"
     gene            9249..10058
                     /locus_tag="U1335_000681"
     CDS             9249..10058
                     /locus_tag="U1335_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5231187.1"
                     /translation="MINKIYASDMDGTFLREDHSFDKERFRRILNQFKEKGYLFVAAS
                     GRSMQSLKLVFEDFVDEIGFVAENGSIVEYQGQTIFMDDPISPEIYLPIIAGIDAGPF
                     GSSQSMVLSGLENFYLLKNAEPQFLEAMTNYYAHFRLVDTFEEVREEIIKINAKFSPE
                     EMDDARRWLNDTFEGVTAMTTGFDNIDIIPNGSNKSVGLSHLCAHFGITGQDVVAFGD
                     NQNDLDMFDFAGLALATENAREDVKAKADSIIGHCNDGAVLAYLEEEVNGN"
     gene            10048..10860
                     /locus_tag="U1335_000682"
     CDS             10048..10860
                     /locus_tag="U1335_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016465979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEM5231188.1"
                     /translation="MAIKLIALDLDGTLLTSDKRISEANKKALQAARECGVYVVLTTG
                     RPLQAIGTFLEELDLLGENQYSITFNGGLVQENTGRVLDKVGFTIEDVRAIRRVTNEL
                     DLPLDVLYGGDVYSLPAAHESLYLTANPLLNKIPVTDEELPEDFVYNKAVSAVAADFL
                     DGQIPKIPAALYKRFEIFKSRDILLEWSPKGVHKANGLAKLIGHLGINQSEVMACGDE
                     GNDLSMIEWAGLGVAMANATDEIKSAANLVLPKTNDEDGIAWAIEHYVLNED"
     gene            10862..12136
                     /gene="ftsY"
                     /locus_tag="U1335_000683"
     CDS             10862..12136
                     /gene="ftsY"
                     /locus_tag="U1335_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEM5231189.1"
                     /translation="MGLFDRLFGQEKQEEQVALVEEVETDQLDFSEDTEAAETESVIQ
                     ETAVAEEPAGNADLSAEQEAQKQRTLDMMAQYYAAKEAAAARVKEAQEQGFDPAIQTK
                     VKEEPVEEVVPVEQESEQDKYQRTLKKTRTGFGARLNEFFANFRSVDEEFFEELEEML
                     ILSDVGVQVASTLAEELRYEAKLQNAKKTDELRRVIIEKLVDIYEKDGQFSEQINFQD
                     DLTVMLFVGVNGVGKTTSIGKLAYKYKQAGKKVMLVAADTFRAGAVAQLVEWGRRVNV
                     PVVTGPEKSDPASVVFDGVKRAVAEGVDILMIDTAGRLQNKDNLMAELEKIGRIIKRT
                     LPDAPHETLLALDASTGQNALSQAKEFAKITPLTGLVLTKLDGTAKGGVVLAIRQELD
                     IPVKLIGFGEKIDDIGEFKSEEFMRGLLEGLV"
     gene            complement(12164..12721)
                     /locus_tag="U1335_000684"
     CDS             complement(12164..12721)
                     /locus_tag="U1335_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5231190.1"
                     /translation="MQHKGTQILETERLILRPFQATDVEPVFQNWTSDEKVTTYLTWP
                     THQTIQDTHDYIQFCIQSYSQEETYRWVIELKESKQPIGDISVVSLDERVQAAELGWV
                     LGSRWWGQGYMPEALEAVTHFLLEEVGCLRITAVHDSENRPSGRVMEKVGMTYEGTLR
                     QAARNNRGFVDIAIYSLLHTDRKSR"
     gene            complement(12723..13397)
                     /locus_tag="U1335_000685"
     CDS             complement(12723..13397)
                     /locus_tag="U1335_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HEM5231191.1"
                     /translation="MIQIKELLTQLEAASHAGTLKRYEKIGETKPYYGVPMGAISGIA
                     KAYKNRLDLFSQLWQTGVLEAQYLAIQIAKNKPDQLPQADLENCLSEQVSVNVLDKLA
                     SIILSKRKDCKVWEEYLLDKNSAIFQRLGWFLRAKYFAGRTASNQEIEETLDHIRQHL
                     QTADPLVQWTMNQCLVEIAVAYPNYLEQGIAIGQELAVYADMKVPKGCTSAYAPDWIE
                     ALLRRK"
     gene            complement(13415..14476)
                     /locus_tag="U1335_000686"
     CDS             complement(13415..14476)
                     /locus_tag="U1335_000686"
                     /inference="COORDINATES: protein motif:HMM:NF021102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HpaII family restriction endonuclease"
                     /protein_id="HEM5231192.1"
                     /translation="MPNKVNKGEWAELFVFLKALSDGKIFAADERLNKIEHLFYTILT
                     ALNLHEEFKKEYIRDSNSNCIILEENGRELLRVPIQEFKQSADILLKAIQNGKGTFEI
                     PEIEPLLTKLKVDKIKASNDSKKDIIFKIHDHFTGTQPFIGFSIKSYIGSKPTLLNAS
                     GATRIHYRCSSDVSEKLREQVHSISTKNKIKDRIQCLKENKVELIFDSLPNSTFERNL
                     QMIDYRMPEILAYLFLTSYSVNGKSVSDVVKNYCQLYNEDMELVEYKVKDLLVAIALG
                     MEPNSKWSGLEDANGGYIVVKEDGEILCYHIYDRNKLREYLYRNTKFDSPSSKRTGAG
                     MFFSENEQEKFSLTVQIRF"
     gene            complement(14469..15620)
                     /locus_tag="U1335_000687"
     CDS             complement(14469..15620)
                     /locus_tag="U1335_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006737943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HEM5231193.1"
                     /translation="MRGGVRKNAGRKEISPEEKKIAKSIHVDPLLYQKIQELEIDGND
                     SFSSKCHYLLEEGLHYLSSKSAKKDCKLTFIDLFAGVGGIRKGFEDEQTKCVFSSEWD
                     KFSAKTYEANYGEVPHGDITKIDEQDIPKHDVLLAGFPCQPFSNIGKREGFEHSTQGT
                     LFFDVLRILKYHMPKMFLLENVPGLLTIQNGETFKIILQSLEELGYSVFYDVLDAQNF
                     GLAQVRKRVVIVGFHPDLAITSFAFPQGNPEKKVPVSSILEDNPTGYAISEHLQKSYL
                     FKKDDGKPQIVDTHSTIQVKTLVASYHKIQRLTGTFVKGGETGIRLLSELECKRLMGF
                     PDEFIIPVSRTQMYRQMGNSVAVPMMRAVANAMKEELALAEMEKRMHYA"
     gene            complement(15893..17380)
                     /locus_tag="U1335_000688"
     CDS             complement(15893..17380)
                     /locus_tag="U1335_000688"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000096131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEM5231194.1"
                     /translation="MSSHVLFTIFGASGDLAKRKLYPSLFRLYKAGHIKENFAVIGTA
                     RRPWTKEFFEQTVIESLGDLPDTPRQAHEFASHFYYQSHDVNDTEHYVALRKLQDDLC
                     EKYDTQHNKVFFLSMAPEFFGTIAKHLKSEQIVDGQGFERLIIEKPFGTSLATATKLN
                     DELAAAFNEDQIYRIDHYLGKEMVQNIFAVRFANIIFEHIWNRDYIDNVQITFAEAIG
                     VEDRGSYYDHSGALKDMVQNHALQVLSLLAMDKPASFKEEDVRAEKIKVFQHLRQPSD
                     EDLKRNFIRGQYAAGSIDGKDYVSYLDEPNIAEASQTETFAGGVFFVDTDRFRDVPFF
                     FRTGKRLTEKGTRVTITFKHAEDIFGQPSEANVLTIFIQPTEGFMLSINGKEVGSHFA
                     LTPAKLNFRHNATALGNSPEAYEKLFFDVLNGDSTNFSHWEEVKASWSLIDRIVDLWA
                     SNQVPLHTYPAGTMGPEAAFDLLESYGCKWVWTPDVWYRERGLLK"
     gene            complement(17459..18274)
                     /locus_tag="U1335_000689"
     CDS             complement(17459..18274)
                     /locus_tag="U1335_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000617844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03943 family protein"
                     /protein_id="HEM5231195.1"
                     /translation="MIRFLILAGYFEMTMYLYISGKLDQYINLHYSYLAYLSMILSFI
                     LAIVQLYVWVKEIRVHSHLKSKIAKLSSIGLLLIPLAIAWLFPTASLDSTTVAAKGYH
                     FPLAAENDTNTQNQEGTTVQYLKPDTSIYFTKSAYQNQMREIADRYLAEETIVVTNEN
                     YMEVMEAIYDYPTEFSGKTIEMIGFVYNDPDNSQQFFLFRFGIIHCIADSGVYGLLST
                     GATTEFPNNTWVKARGTIKVSYHTSLKQNLPTLELQSMVQIEQPDSPYVYRVF"
     gene            complement(18271..19176)
                     /locus_tag="U1335_000690"
     CDS             complement(18271..19176)
                     /locus_tag="U1335_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEM5231196.1"
                     /translation="MFGLDQLPTSVLQAGAIFLSIMIEALPFVLIGAIISGFIDVFIT
                     PDKVRKLLPKNKFLAILFGTFIGFIFPSCECGIVPIVNRLLEKKVPSYTAVPFLVTAP
                     VINPIVLFATFTAFGNSLLFALYRALGAIIVSLVLGIILGFFVKGPILKESKFDHHQH
                     DYSDKTSWQKVGFALIHAIDEFFDTGRYLVFGCLFASLVQVYIPTAVLTTIGHSPLTA
                     IILMMLLAFLLSLCSEADAFIGASLLSSFGFAPVMAFLVIGPMVDVKNLLMMKHYFKG
                     KFIAGFIITITLVILGYSLILGGVV"
BASE COUNT         5544 a         3636 c         4491 g         5637 t
ORIGIN      
        1 aattatttct atctagcttt gtagcggact tgatttctaa ctttggagat actctttact
       61 atctggcttt gatgaactat gttttactct taccagatac caagtttgcc ttggctatga
      121 ttaccgcatc tgaaaccttg ccgattttgg ctggtctctt tatcgggatt tgggcagaca
      181 agaccaaaaa caaattggat accattctag ctacccttgt gatgcgtgtt ggtttgtatg
      241 cccttgttgg tttcctcatg ggatttgcac cagccctctg ggttgtggca gtggtctgcg
      301 tcatcaactt cctgtctgac cttgctggtc aatacgaaaa cggtctctat atgccagtca
      361 gcttgcgggt tgtggctgct gaagaccgtg aaacagctat ggcttttaaa atgactgtta
      421 aaaatctctt gcagatcgcc tttcaagcca gtggtgccat cctgatcgga tttatgtcct
      481 atcaaaacct agccttcttc aacgctggga ccttcttggt cagccttgcg attatggtag
      541 gtttgcgtcc agcttttgcc aagttgttga aagagaatcc tatccaagaa gttgaacaaa
      601 ccgaaacaga agcaggactt atcaagggaa ttggtcagag tatcaaagat tcctaccaag
      661 ctgtgcagaa tattccagtt ctcaaagcgt caattattac cattgccagt ttgaatgccg
      721 ttttcaccgc actgtcacca ttagcaattc ttaatatgaa ggagttttca gactttgtga
      781 ttgtcaatgc ggggacaacg gtggctctga tttccattct cttctcagtt ggtagtatct
      841 tgggttccag tctagggatg gctcttttca aaaatgttag cttggtcaac ctcctcaagt
      901 tttctactct tatgcctgtt ttacttttct caggtttctt tcttcacaat atttatgtgg
      961 tgctggcagt gatcttcgta acggcagtga cactgggaat tttcaacccg aaaatgagtg
     1021 ctctggttat gaatgaactg ccagaggata aattggcaac tgtcggtggt gggattgatg
     1081 ctttctgcca gattggtatg gtagctggtc aagccttggt tgctcttatg gtgacggtgc
     1141 tttctgcgac aagtatttct ctcatcttcc tcttgctttc tgtgggactc ttgggttata
     1201 gcatttttac aggaaaaaat actgaaaaga ttgtagctag tgcatagata gaaaaatttg
     1261 actactagaa ggaaaattac ttgtgaaaaa aattatctgt aataaaatat tcttgttcag
     1321 ttacctagca gatgtgattt ccaactttgg cgatacgctt tactatctgg ctttgatgaa
     1381 ctatgtcttg tttttacccg ataccaagtt tgccttggcc atgattacgg tttctgaaac
     1441 tctgccgatc ttgtcgggca tttttatggg aatctgggct gatcggacaa aaaataaatt
     1501 ggatacgatt ttggctactc tggtgattcg ttttgttctt tatgccctcg ttggcttact
     1561 gatgggattt acaccagccc tgtggattgt agcggtagtt tgtgtggtca atttcctatc
     1621 tgacttggct ggtcagtatg aaaacgggct ttatatgcca cttagcctgc gggtcgtgga
     1681 ggcagaagac cgtgaaacag ccatggcttt taagaatacc gtgggcggca tcttgatgat
     1741 tgtctttcga tccagcggtg ccattctcat cggcttcatg tcttaccaga atcttgcctt
     1801 tttcaatgct gggaccttct tggtcagtct tgccatcatg gtaaccctcc gtccagcttt
     1861 tgccaagttg ttgaaagaaa atcctatcca agaggttgaa caaactgaaa cagaagcagg
     1921 acttatcaag ggaattggtc agagccttaa agaatcttat caagccattc aaaagattcc
     1981 tgtactaaag gcttctattc tgaccattgc gggcataaat acagtttttt ctgccatatc
     2041 tcccttggtt atcctgtcta tgaaggaatt ttcagacttc gtgattgtca attctggcat
     2101 aactcttgcc ttggtattca atctattttc tgttggttac atccttggct ctagtctagg
     2161 tatggctttc ttcaaacata tcagcttgtc taacctgctc aagtgttgta catttttgtc
     2221 ggtcatcctg tttgttggct tctaccttca taatatttat attgtgatgg cgactatctt
     2281 agtcactacc atgacgactg gcattatcaa tccaaaattg tatgccctga taatgaatga
     2341 actacccgaa gataaattag cgaccatcaa tgcaggaatg gggaccatat ttaatatcgg
     2401 catgcttgca ggtcaagcct tggtcgccct aatggtgaca atcttatctg ttacaagtat
     2461 ttccctcatc ttcctcttgc tttctgtggg actagtaagc tatactattc ttgtggggcg
     2521 taggcctaaa aatgaagtag ttgttaaagc ttagaaagta tgcgtatgaa attagattac
     2581 cgagattata gaagcgagat tgtcgaaaaa ttctttattc ctttaattgt tacggaacgt
     2641 gaggaaccga ttgaggcgga tttttcacag aaagaaaaag acattctcaa agatgccttg
     2701 gacattcgtg atgagattga agaaaagttg gcagattttc gtcaggaagt caatcaagtc
     2761 tttgtctggg gacatatttt taacattttg catagtcttt atttctatat cttgaatgat
     2821 gggcaggatc caaaaacagt tgaggaagct tgtcaattga ttttaaagct gtctcaagca
     2881 gaagtagaag atgccatgcg gactatgcta gcgtctgaaa atgacggtca tcgtgagaaa
     2941 gacctcagcc tcatggaact cttggaaaag acagataaaa agccggcaga taagtggtat
     3001 tggtcactgg ctattcgcaa tcctttggaa acagttgagc ggtctgtcca tctcttggat
     3061 aagatgctgc caatctatca gccctatttt gagcaggcaa gggcggagcg tgaaaaattt
     3121 gctcaggaat ttgacattga gaaactctat cgagactcca agcagttagc catgaccagc
     3181 ttggatgctt tgagtgttga aaatgctcaa ttcttcgttc tcagtccgtg gaattattgg
     3241 tttgcttatt atggcaacga agaatttgac tatatgaaag ttgctctttt agcttcctgt
     3301 cgaattgatc agattatgct gtcaaatgac gagctggatc tggatgattt gacaacggct
     3361 cttaaagtca tcagcgatag cacgcgctat caggtcttgg tggagctgac caagcctcat
     3421 gccaagagca aggacatcgc agagcgactg gctattacag gagcagccgt atccttccac
     3481 acccaaaagc tgattaatgg cgacctgctc ctctttaaca caaaagtcaa ggacgctaaa
     3541 tacagtgtca atcgcgacct gctccaacag gtgattgata agttgaaaga ggattttgat
     3601 ttgtaaaaaa gccttgtaag ttaagtctta caaggttctt ttgtgcttat actcttcgaa
     3661 aatcaaaatc agacgttgtt gacttgattt gatgagtgaa aaggtccagt ggatcttttc
     3721 agcctgttcc cttgaaatat aataaggaac agtgttctat ctgcatctta cgctcacgaa
     3781 ccaagttcgt ctaatttccg acctccaaca gtctattccc agactgttgg agctagtctg
     3841 tttttgattt tctttgagta ttaatgatta accagctgag cagttggcaa gtgatgatgg
     3901 tgataaagaa aaccagccaa ccttgctgta ttttggtcag ggaactagtt tctaggaaga
     3961 aaaagctgat ttccactggg ataacatgga taaaataata atagctggcg tattctttta
     4021 gaaattggaa ttttttctgg cggaagaggt ctgtggttag ggtccaggcg actagatagg
     4081 ctgtgaatgg aatcaggcta aatagaaagt tcttgtcgta gccctgattg agatagatga
     4141 tagtggcttc aaaggctaaa agggctgtgc agacaagtag tttgtttttt tgtcggtatt
     4201 ggaaaatggg gtgattgagt ttatcggcta gataaaagcc tgtcaggaca aaaatcggtg
     4261 cgtagaagag gccgttgcgg ctggtgaaaa agaaggtttt gtagctgtca aatgcggtca
     4321 gtaaagccga ttctgccagg taggaggagt aggtttcgac tgagcctagg agatagagaa
     4381 ggcaggctag acaagctgtg atgcgccagc cccatttctc caaggaaaaa tggacgagga
     4441 caagtcctag caggaaggcg ggcatgtacc agagttggta gctggtgccg gtgtaggtca
     4501 gtccgactag gagtgcgagg ggatagtaga gtagggggat ttcttggagg tttaggtaga
     4561 agaggtagaa gggtaggtag aggacggacc aggtcaggta ctgcttgctg tagcggatga
     4621 ggtattgttt ggagaggctg gggtagttgc gtcggaggaa gaagctggct gtgaccatga
     4681 agtagggaac gaccatgcga ctaaagattg atttttggat gaagtggagc tggtctgctt
     4741 caaataacct gcggcaatgg agggcgataa cgagaatggc tccgatgaac tggatgaggg
     4801 agagtagtga tgtattgagt ggttttgtct tattttgcat gctaacgttt ttcttttttt
     4861 cttccatttt atcgaaatct gatgaatatg taaatgtttg caaaaagatg tggagaggtg
     4921 ccggctgaaa cttagttgac aagagaagtc cagtggaaaa tatggtataa tgttaggacg
     4981 gagtaaatgt aaaccatcta tttcgtttaa gttagaaagg agcatataga tgaaagattt
     5041 acatgcaaaa ttattggctg attttgggat tgattttttg gatttgaatt tattagaaac
     5101 ggcttttacc catacttctt atgccaatga gcatcgcctt ctaaaaattt cacataatga
     5161 gcgcttggaa tttttaggag acgctgttct ccagttgatg atttccaaat atctctatca
     5221 aaaatatcct gatagccccg aaggtgagat gtccaagttg cgttcgacct ttgtacgtga
     5281 ggagtctttg gctggttttt cacgtgcttg tggttttgat cggtttcttc gtcttggtaa
     5341 gggggaagag aagtctggag ggcgaaatcg cgatactatt ttaggagatg ctttcgaggc
     5401 gttcttagga gctctgctat tggacaaggg ggaaaagacc gtggaggaat ttatccataa
     5461 ggtcatgatt cctcgtttag aaaaagggaa ttttgagcgc gtgaccgact ataagactgc
     5521 tttgcaggaa attttgcagg tcaatggtga gattgctatt tcgtatcaag taatagctga
     5581 gtctggacct gcccatgata agacctttga agtggaggta tctgctgatc agcgtgtgat
     5641 tggtcgtggt cgtggtcgct ctaagaaatt agctgaacaa gccgccgcca aaaatgctgt
     5701 ggaggctaga ggataggtat gtatctaaaa tcaattgaaa tgcagggctt taagtccttt
     5761 gcggataaga ctaaggtagt ctttgatcgt ggagtgactg ctgttgtagg gccgaatggt
     5821 tcgggcaagt ccaatattac agaaagtcta cgttgggcct tgggagagtc gtctgctaaa
     5881 agcctacgtg gaggcaagat gccagacgtc atcttttcgg gaacagaaag ccgcaaggct
     5941 cttaactatg cctcggttgt cgtgaccttg gataatagca caggttttat cgccaataaa
     6001 cagaaagaaa tcaaggtaga acgccatatt tatcggtctg gagatagcga gtatttgata
     6061 gatggtcaga aggttcgatt gcgggatatc catgatcttt tcatggatac aggcttggga
     6121 cgtgattctt tctctatcat ttcacaaggg cgggttgaag caattttcaa ttccaagcct
     6181 gaggaacgcc gtgctatttt tgaagaggcg gcaggagtct taaaatacaa gacgcgtaaa
     6241 aaagaaacag aaagtaagtt ggcacaggcc cagggcaact tggaccgctt ggatgatatt
     6301 atctatgaac tggataatca ggtcaaacca ttggagaaac aggcacaaac tgctaagaaa
     6361 tttctagaat tagatggtca acgtaaggaa ttatacttag atgttttggt ggctcagttg
     6421 tcgcttggta aggaaaagtt atcgaaaaaa gaagctgaac tagagtctgt caaaacggaa
     6481 ttgactagct actacaaaca gcgttctgag ctggagcaag aaaatcagaa cttgaaagag
     6541 aagcgccacc gcctttcaga acaattggag cgtgaacagg cagttctgtt ggatttgacc
     6601 aagttaatca gtgatttgga gcgaaaaatt gaggtccata aactggaatc tagtcaaaac
     6661 gaatcaagtc gtcaagaagc gcaggcgcgt ttggaaaact tgttgactag acgagagcag
     6721 ttggcagaac agattgagca aaagcaagaa acgcttgcgc aattagatag ttccttgtct
     6781 agcttgaaag acgatattgc tgcggtagac aaagaaattt cctacttttc agaagatcct
     6841 gatcaggttt tagatcatct acgtgaacag tatgttgctc tgatgcagga agaggcagaa
     6901 gcttcaaaca gtctgaccaa gattcagcag gatattgcca atcaaatcag tctttctgag
     6961 agtaaatctg aagacttggc acgcttgcag acggaaaaac aaacagctca agaagtactt
     7021 gataagagtc ggaaaagttt agaagaagct gattacgtgt tacgccagtt acttgagagc
     7081 tatcagacca aaaaatcgga attggatcaa acccagactg cttatcaggc tgagcaaggt
     7141 cgcttgtttg atttgctgga tcagttgaaa ggtaagcagg ctcgccagtc tagtttagaa
     7201 gctattttaa aaaatcattc caatttctac gcgggggtta aggctgtctt acaggcagcg
     7261 ccaagcttag gaggaattat tggagcagtc agtgaacaat tgacctttga tactcgttac
     7321 caaacggctt tggaaattgc tcttggcggt gctagtcaaa acgtcatcgt tgaagatgaa
     7381 gcgactgcta aacgggctat cgcatttttg aaagaaaaac ggcaaggacg ggcaaccttc
     7441 ttacctctaa caactatcaa gccacgtcag ctttctggac tgcaagtctc tttactagaa
     7501 tcttcagaag gattcttggg gcttgcaagt gatttggtga cttatcagcc aaatttagat
     7561 gcgattttcc aaaatttgct aggcactatc gcaatttttg ataccattga ccatgccaat
     7621 caggcggcgc tggcaaccaa gtttcaagtg cgtatggtga ccatggatgg agcggaaatc
     7681 cgtcctggtg gagcctttgc tggtggtagc aatcgaaata acagcacgac ctttatcaaa
     7741 ccagaactgg atgctctttt aggagaaata gcagagctgt ctagccagtt gcaggagcaa
     7801 gaaagcttgg ttgcagctaa gaaaactagc ttagaccaga ccagagaagc cttggaaacg
     7861 attaaggcgg agggggaaga agctagattg aaccagcaga gcgcaaggat tcatcaggaa
     7921 caggcagaaa atagactggc tcagctatca gcccagtatg acctgcaaat gagtcaggtt
     7981 agtccgacca ttttgactga gctagaagag gctgctgcta aggaagaagt aaatgtccaa
     8041 gccttgaatg agaaaaaact agccttggat caacaaatca atcaagtccg tgataatcgc
     8101 gacagtattc aagaaagctt gcagaaacta cagactcaga agggtcaact aactttggaa
     8161 caggctgaac taactagcca acttcgtttt gaacagacag atctgagacg tttgcaagaa
     8221 gaaaaagtgg ttgcagataa ggaaatttct cttttagagg atatgattga ccagaagcta
     8281 gaagctcttg aagatactag tattgagatt cttgaagaac aattgcaggc ggcatctgat
     8341 aagcaaaacc agaccaatca gattctaatt cgcttaaagt ttgaattgga agatattgat
     8401 gggcagtttg aagacttgga agaaagattg caacaagctc ggactaagaa tgatgatttg
     8461 attcgtaagc aggctaagtt agaggcggat tgtgagcaag cgggcgataa attacggact
     8521 ctacttggta atttgaccga gcatttcaaa ttgagttttg aagctgccca gtctcaggcc
     8581 aaggaagttg agaatttacc acttgctgaa caaactttga aagacttgga gcgttctatt
     8641 cgtgccttgg gaccagtcaa cttggacgcc attgagcagt ataatgaggt caataaccgc
     8701 ctgaccttcc tcaatgagca acggacggat attttatctg cacgtgattt gctcttgaat
     8761 accattcatg aaatggatga tgaagtcaag gaacgcttta aggtcacctt tgaagccatt
     8821 cgcgaaagct ttaagcagac attcaaacaa atgtttggcg gtggctctgc ggacttgatt
     8881 ttgaccagcc cagacatact gactgcgggt gtggagattt ctgttcagcc tccgggtaag
     8941 aaaattcaat ctctcaatct tatgtcaggt ggcgaaaaag ccctttcggc cctcgctctg
     9001 ctattttcca ttatccgtgt taagaccatt ccttttgtta ttctcgatga ggtggaggca
     9061 gccttggatg aggccaatgt caaacgtttt ggtgactatc tcaaccgttt tgataaggag
     9121 agtcagttta tcgtcgtgac ccaccgtaaa gggaccatgg cggcagcgga tgccatgtat
     9181 ggggtgacta tgcaggaatc tggcgtgtcc aagattgttt ccgttaagct gaaagatgtg
     9241 gagaaattat gattaacaaa atttacgcca gtgatatgga tggtaccttt ttacgagaag
     9301 accatagttt tgataaggaa cggtttcgtc gtatactgaa tcagtttaag gaaaaaggtt
     9361 atttatttgt ggcagcaagt gggcgatcta tgcaaagcct gaaacttgtt tttgaagatt
     9421 ttgtagatga aatcggtttt gtggcagaaa atggttcaat cgttgaatat caggggcaga
     9481 ctatctttat ggatgatcca attagtcctg aaatatatct gccgattatc gcgggtattg
     9541 atgcaggtcc ctttggtagc agtcagtcca tggtgttgtc tggactcgaa aacttttatt
     9601 tattaaaaaa tgctgagcct cagtttttag aagcgatgac gaattattac gcacattttc
     9661 gattggtaga cacatttgaa gaagttcgag aagagattat aaaaatcaat gccaaatttt
     9721 ctcctgagga aatggacgat gccagacgat ggttaaatga tacatttgaa ggcgtaacgg
     9781 ccatgacaac tggttttgac aatattgata taattccaaa tggctcaaat aaatcagttg
     9841 gattgagtca tctctgtgct cattttggaa ttaccggtca ggatgtagtg gcatttggtg
     9901 ataatcaaaa tgatttagat atgtttgact ttgcaggtct ggctcttgcg acagaaaatg
     9961 caagagagga cgtgaaggcc aaggcagatt ctattattgg tcattgcaat gatggagcag
    10021 tattagccta tttagaggag gaagtaaatg gcaattaagt tgattgcatt ggatttagat
    10081 ggaacacttc tgacatcgga caaacggatt tcagaagcta ataaaaaggc cttgcaggca
    10141 gcgcgtgagt gtggagttta tgtagttctg acaacagggc gtcctttaca agctatcggc
    10201 acttttctag aagaactaga tctgctaggg gagaatcaat attcgattac atttaacggt
    10261 ggtctagtcc aggaaaatac aggtcgagtt ttggataagg ttggcttcac cattgaagat
    10321 gtccgtgcca tccgtcgtgt gacaaatgaa ttagatttgc cattggatgt tttgtacggc
    10381 ggagatgttt actcgcttcc agctgcccat gaatctcttt acctaacagc caatccactt
    10441 ttgaataaaa tccctgtgac agatgaggag ctgccagaag attttgtcta caataaggca
    10501 gtttcagctg tggcagcaga ctttttggat ggacaaattc caaaaatacc tgcggcatta
    10561 tacaagcgtt tcgagatttt caaatcacgc gatatattgc ttgagtggag tcctaaaggg
    10621 gttcacaagg caaatggctt ggctaagttg attggtcatt tgggaattaa tcagtcagaa
    10681 gtcatggcct gtggcgatga aggaaatgat ctttcgatga ttgaatgggc tggtctgggt
    10741 gttgctatgg ctaatgcgac tgatgaaatc aagtctgcgg ccaaccttgt cctgccaaaa
    10801 accaatgatg aagatggcat tgcttgggcc atcgagcact atgtattgaa tgaggactag
    10861 tatgggatta tttgatcgat tatttggaca agaaaaacaa gaggagcaag tcgctcttgt
    10921 tgaagaagtg gagacagatc agttagattt tagtgaagat acagaagcag ctgaaactga
    10981 atcagtcatt caagaaactg ctgttgcaga ggagcctgcg gggaatgcag acctctcagc
    11041 agagcaagaa gctcaaaaac aacggacttt ggatatgatg gctcaatatt atgcagccaa
    11101 agaagccgct gcggctcgag tgaaggaagc gcaggaacaa ggctttgacc ctgctattca
    11161 aaccaaggtc aaagaagagc cagttgagga agttgttcca gtagagcaag aaagtgagca
    11221 ggacaagtac cagcgtacct tgaaaaaaac tcgtacagga tttggggcaa gactcaatga
    11281 attctttgcc aatttccgtt cagttgatga agaatttttc gaagagttgg aagaaatgct
    11341 gattttgtca gacgtaggtg tgcaagttgc ttctacgctg gcagaggagc tccgctatga
    11401 agccaagcta caaaatgcca agaagacaga tgaactccgt cgtgttatca tcgaaaaatt
    11461 ggtggatatt tacgaaaaag atggtcaatt cagcgagcaa atcaatttcc aagatgattt
    11521 gacagtcatg ctctttgtcg gtgtcaacgg tgttgggaag acgacgtcta tcggtaagtt
    11581 agcctacaag tacaagcagg ccggcaagaa ggtcatgttg gtcgcagcgg acaccttccg
    11641 tgcgggtgcg gtagcccagc tggtcgagtg gggtcgccgt gtcaatgtgc cagtagtcac
    11701 aggacctgaa aagtcagacc cagccagcgt ggtctttgac ggggtcaaac gtgccgtggc
    11761 agaaggcgtg gatattctca tgattgacac agcaggccgc ttgcagaata aggacaacct
    11821 catggcagag ctggaaaaaa ttggtcgtat catcaaacgg actttgccag atgcaccaca
    11881 tgaaaccctc ttagcactag atgcctcgac aggtcaaaat gccctcagtc aagccaagga
    11941 atttgcaaaa attaccccat tgacaggtct tgtcttgacc aagctagacg gtacagcaaa
    12001 aggtggtgtt gtccttgcta tccgtcagga actagatatt ccggtcaagc taatcggttt
    12061 cggtgaaaaa atcgatgaca tcggagaatt caaatctgaa gagtttatgc gtggactttt
    12121 agagggattg gtgtaatatt gaaaaaagtc gttagttgaa aaactagcga ctttttctat
    12181 ctgtatgcag cagtgagtaa atggcaatgt ccacaaagcc acgattgttt cgagcggctt
    12241 ggcggagagt gccttcgtag gtcataccga ctttttccat gacacgacca gaaggacgat
    12301 tttcactatc gtgaacagcc gtaatccgta aacaaccaac ttcttccagc agaaagtgag
    12361 tgactgcttc aagggcttcg ggcatataac cttggcccca ccacctgcta cctaacaccc
    12421 aacctaattc agcagcctgt acccgttcat ctagactgac gacggaaata tctccaatag
    12481 gttgcttact ttctttgagc tcaattaccc acctgtatgt ttcttcctgt gaataggatt
    12541 ggatacagaa ctggatgtag tcatgggtgt cttgaattgt ctgatgagtt ggccaggtca
    12601 gataggtggt aaccttttca tctgaagtcc agttttggaa aacgggctca acatctgttg
    12661 cttgaaaagg gcgtaaaatc agtcgttctg tttctaaaat ctgagttcct ttatgttgca
    12721 tctcatttcc tcctcagcaa tgcctcaatc cagtcgggtg cgtaggcaga agtgcagcct
    12781 tttggaactt tcatgtccgc atagacagcc aattcctgac cgattgcaat gccttgttcc
    12841 agatagttgg gataggcaac cgcaatctcc actaagcatt ggttcatggt ccattggaca
    12901 agcgggtcag cggtttgcaa atgctggcga atatggtcta gagtttcttc aatttcttga
    12961 tttgaggcag ttcttccagc aaaatatttg gcacggagga accagcctag gcgttgaaaa
    13021 atggctgaat ttttgtccag caagtattct tcccaaacct tacagtcttt tcgtttgctg
    13081 aggataatgg aagccagctt atcaaggaca ttgacagaaa cctgttcact gaggcagttc
    13141 tctagatcag cttggggaag ctggtcaggc ttattttttg caatttgaat agctaaatat
    13201 tgtgcctcta ggacccctgt ttgccagagt tgagaaaaca agtccagtcg atttttatag
    13261 gccttggcga taccagaaat agctcccatt ggaacgccgt agtagggctt ggtttcacca
    13321 attttttcat aacgcttgag ggtgccagca tggctggctg cttcaagttg ggtgagtaat
    13381 tcttttatct gtatcatggt aattagtcct ctacctagaa tcgaatttgc acagtcagtg
    13441 aaaatttctc ttgttcgttt tcagaaaaaa acatcccagc accagtccgt ttgcttgaag
    13501 gactatcaaa ttttgtattg cggtataaat attctctcaa tttattccga tcatagatat
    13561 ggtaacatag gatttcgccg tcttccttca ctacaatata gcctccattt gcatcttcca
    13621 aaccagacca ttttgaatta ggttccatac ccagggcaat agctacaagt aaatctttta
    13681 ctttgtattc cactaattcc atatcttcat tgtagagttg acagtaattt tttactacat
    13741 ccgaaacaga tttgccgtta acagagtaag aagttagaaa gagataggcg agtatttcag
    13801 gcatacgata atcaatcatt tgtaaatttc tctcaaatgt tgagttgggg agactatcga
    13861 agatgagttc aaccttattt tcttttaaac attgtatgcg gtccttgatt ttatttttgg
    13921 tagaaattga atggacctgt tctctcaatt tttcagaaac atcagatgaa caccgatagt
    13981 ggatgcgagt agctccactt gcatttaaca aagtaggctt gcttcctata tatgatttta
    14041 tggaaaagcc aataaaaggt tgtgtgcctg tgaaatggtc atgaatttta aagataatgt
    14101 cttttttgct gtcattactg gccttgattt tatctacttt gagttttgtt agtaagggct
    14161 ctatttctgg aatttcaaaa gtccccttac cattttgaat agcttttaat aaaatatcag
    14221 cagactgttt gaactcctga ataggaacac gtagcaactc tcttccattt tcttctaaaa
    14281 tgatgcagtt agaattgcta tctctgatat actccttttt aaactcttca tggaggttca
    14341 atgcagttaa tatcgtatag aataaatgtt caatcttgtt taatcgttca tcggccgcaa
    14401 atatcttccc atcagagaga gcttttaaga agacaaatag ttcagcccac tctcctttat
    14461 taactttatt aggcataatg catccttttc tccatttcag ctagggcaag ttcttctttc
    14521 atagcattgg caaccgcacg catcattggt acagcaacag aattgcccat ttgacgatac
    14581 atttgtgttc gactaactgg gataataaac tcatctggaa atcccatcaa tcgtttgcat
    14641 tctaattctg aaagtaagcg gatcccagtt tcacctccct ttacaaaagt ccccgttaaa
    14701 cgttggattt tatgatagga tgctaccagt gttttgactt gaatagtcga atgagtatcc
    14761 actatttggg gttttccgtc atccttttta aaaagatagg atttttgtaa atgttcggaa
    14821 atggcatatc cagtaggatt gtcttctaga atactggaaa caggaacttt tttttctgga
    14881 tttccctgtg ggaaagcaaa gctagtaata gccaaatcag ggtgaaatcc aactatcaca
    14941 actcgttttc gtacttgagc taaaccaaag ttttgtgcat caagaacatc atagaagaca
    15001 gagtaaccta attcttccag actttggaga ataattttaa acgtttcacc gttttgaatg
    15061 gtcagcaagc cggggacatt ttctaaaaga aacattttgg gcatatggta ttttaaaatt
    15121 ctaagcacat cgaaaaatag agttccttga gtggaatgtt caaagccctc tcgcttccca
    15181 atattagaaa atggctggca aggaaaacct gccaagagaa catcgtgttt tggaatatcc
    15241 tgctcatcta ttttcgtgat atctccatga ggtacttctc cataatttgc ctcataggtt
    15301 ttggctgaaa atttatccca ttccgaagaa aagacacatt tggtttgctc atcttcaaac
    15361 ccttttcgta tacccccaac accagcaaat aaatcaataa atgtcaattt acagtctttt
    15421 tttgctgact tagaggaaag ataatgcaat ccttcttcta atagatagtg acatttacta
    15481 gaaaaactat cgtttccgtc tatctctagt tcctgtattt tttggtagag taagggatca
    15541 acatgaattg attttgctat ttttttctct tctggactaa tttcttttct tccagcattt
    15601 tttcggacgc cacctctcat aagtaccacc tttctataac ggaattatat cacatatttt
    15661 ttgatttcac gaatatattt ttcaattttt aatccgtata tcaaaaaaaa actggattgc
    15721 tccagttttt atatgtagtc gtttagtttg cttttagtac aaggcaacga ggtgcaggtt
    15781 gctagaacag cctagaggct gttctaggtt ggaaataaga catgcgaagc aagtcacttt
    15841 cgtggagtac ggcaaagcga gttaacgaag taatcaaaga taaactaaat gactatttca
    15901 ataaaccacg ttcacggtac cagacatctg gcgtccaaac ccacttgcaa ccgtagcttt
    15961 ctagcaaatc aaaggctgcc tcaggtccca tagttccagc tggataggtg tggagtggga
    16021 cttggttgct tgcccacaaa tcaacaatgc ggtcaatcaa gctccagctt gctttcactt
    16081 cttcccaatg gctaaagtta gtagaatcac catttagaac atcgaaaaat agtttttcgt
    16141 aggcttcggg tgaatttcca agagcagtag cattgtggcg gaagttgagt ttggcaggag
    16201 taagagcaaa gtgggaacca acttccttac cgttgataga gagcatgaag ccttcagttg
    16261 gttggataaa tatggtcaat acattggcct cagaaggctg accaaaaata tcttccgcat
    16321 gcttgaaagt gatggtcacg cgcgtgcctt tttcagtcag gcgtttacct gtacggaaga
    16381 agaaaggtac atcacggaat cggtcagtat cgacgaagaa gacgcctcca gcaaaggttt
    16441 ctgtctgaga agcttcggca atatttggtt catccaagta gctaacgtag tcttttccat
    16501 cgatagaacc tgcagcatat tgaccacgga tgaagttgcg tttgaggtcc tcatcagaag
    16561 gctgacgcaa gtgttggaag accttgatct tttcagcgcg gacatcttcc tccttgaagc
    16621 tggctggctt atccattgct agaagggaaa ggacttgaag ggcatggttt tgcaccatgt
    16681 ccttcaaggc gccagaatga tcgtagtagc tcccacgatc ctcaacacca atcgcttcag
    16741 caaatgtaat ttggacgtta tcgatgtaat cgcggttcca aatatgctca aaaatgatat
    16801 tggcaaagcg aaccgcaaag atattttgta ccatttcctt gcctaggtaa tggtcgatgc
    16861 ggtagatttg gtcctcattg aaggctgctg ccaattcatc attgagtttg gtagctgtag
    16921 caaggctagt tccgaaaggt ttttcaatta tcaagcgttc aaaaccttgt ccgtcaacaa
    16981 tctgctcaga tttgaggtgt ttggcaatgg ttccgaaaaa ttcaggtgcc atagagagga
    17041 agaagacctt gttgtgctgg gtatcgtatt tttcacataa gtcatcctgc aatttacgaa
    17101 gagctacata atgttccgtg tcattgacat catggctttg gtagtagaaa tgactagcaa
    17161 attcatgagc ttgacgtggt gtgtcaggca gatcacctag tgattcaatg acggtttgct
    17221 caaaaaattc cttggtccag ggtctgcgag ctgtaccaat tactgcaaag ttttccttga
    17281 tgtgtccagc cttatagagg cgaaataaag atgggtaaag tttgcgtttg gcaaggtcgc
    17341 cactagcacc aaaaattgta aacaatacat gtgatgacat aatttcattc ctatctgttg
    17401 aatatcatta atagtatacc acaaattgtc agaaaattca ctttttgagt tgggattatt
    17461 agaaaacacg gtagacatac ggtgaatctg gctgttcaat ctgaaccatc gattgtaatt
    17521 caagtgttgg gagattttgt ttcaacgatg tgtggtagga aaccttgatt gttcctctgg
    17581 cttttaccca agtattgtta ggaaattctg tggtagcccc cgtagagagt aagccatata
    17641 ccccagaatc agcaatgcag tgaataatac caaagcggaa aaggaaaaat tgctggctat
    17701 tgtcagggtc attgtagaca aatccaatca tttcaatcgt ttttcctgaa aattccgtag
    17761 gatagtcgta gattgcttcc atcacttcca tatagttttc attagtaaca acaatggttt
    17821 cttcagccaa gtatctatca gcaatttcac gcatctggtt ttgataggca gattttgtaa
    17881 aataaataga agtatcaggc ttgagatact gaacagtcgt cccttcttgg ttttgtgtat
    17941 tagtatcgtt ttctgctgct agtgggaaat gatagccctt ggcagcaaca gttgttgaat
    18001 ccaggcttgc cgtaggaaag agccaggcta tagcaagagg aatgagcaat agtccaatgc
    18061 ttgatagttt ggcaattttg ctttttaaat ggctatgtac tcgaatttct tttacccaga
    18121 catacaattg tacgatggca agtatgaaag ataaaatcat ggatagatag gctagatagc
    18181 tatagtgcag attgatgtat tggtctaatt ttccagaaat atagagatac atggtcattt
    18241 caaaatagcc tgcaagaatt aaaaaacgaa tcatactaca cctccaagta tcagactata
    18301 tcccaaaata acgagagtga tagtaatgat aaaaccggct ataaattttc ccttgaaata
    18361 atgtttcatc atgagcaagt ttttaacatc caccatgggt ccgataacta agaatgccat
    18421 tactggggca aatccgaagc tggatagtag tgatgcacca ataaaggcat cggcttcaga
    18481 acatagggaa agaagaaagg ccagcaacat catcagtata atagctgtta atggactgtg
    18541 accgatggtg gtcaggacag cagttggaat atagacttgt acgagactgg caaatagaca
    18601 accaaagact aggtaacgtc ccgtatcaaa aaattcatca atggcatgaa taagtgcgaa
    18661 gccaactttt tgccagctgg ttttatctga ataatcatgc tggtgatggt caaacttgct
    18721 ttctttaaga attggtcctt ttacgaaaaa accaagaatg attcccaata ctagggatac
    18781 aatgatggct cctagggctc tatagagggc gaaaagtagg gaattgccaa aagcggtaaa
    18841 ggttgcaaaa aggacgatag gattaatgac aggcgccgtt actaaaaagg gaacagcagt
    18901 gtaactcggc acttttttct ctaatagccg attgacaata gggacaatac cacattcgca
    18961 agacggaaaa atgaagccga taaaggttcc aaatagaatg gcaagaaact tgtttttggg
    19021 taagagttta cgaaccttat ctggtgttat aaacacatcg ataaaacctg aaataatagc
    19081 tccaatcaag acaaagggca aggcttcaat catgatagac aggaaaatag cccccgcctg
    19141 taggacggag gtaggtaatt gatcaagacc aaacatatta tttattatcc tgattcaagt
    19201 tgtttttctc ggaatgttct tttgattttg gatctggata ctcaatttct tccaattttt
    19261 caaatgaagc aaattcttcc agcatctttt ctaaatcatc ttgtcgtt
//
LOCUS       DASGAC010000026        19242 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.026, whole genome shotgun sequence.
ACCESSION   DASGAC010000026 DASGAC010000000
VERSION     DASGAC010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 19242)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19242)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19242
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.026"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            180..518
                     /locus_tag="U1335_000691"
     CDS             180..518
                     /locus_tag="U1335_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231197.1"
                     /translation="MESIVGIIVIVVVMAVLVYLLINMWKIRATSAGQTDDTTLYFVR
                     FKGVNPPDLANSSVFNQVAKIKCAKGDTYQVTSTVNDVKLRDVIMDEFQLKSSEVVVY
                     YPPRLFFYAS"
     gene            696..1010
                     /locus_tag="U1335_000692"
     CDS             696..1010
                     /locus_tag="U1335_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003037418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose transporter subunit IIB"
                     /protein_id="HEM5231198.1"
                     /translation="MAKALIICAGGMSSSLIAKKTQTLLEEQGHTVEMNAVGVPEGGK
                     KINAAEYDLYLISPQTKMHFKQFEEAGKKVGKPVVQIPPQAYIPIPMGIEKMAKLVLD
                     NI"
     gene            1057..3030
                     /locus_tag="U1335_000693"
     CDS             1057..3030
                     /locus_tag="U1335_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM5231199.1"
                     /translation="MLNTKEKMILQYLYQHQNGFSTSKVLAEHLSYTDRTIRTYIKKM
                     ISEISEEEAGFTILSKQGYGYQLNISDEEKYHRFLSENQLVFGVDYSDAENRHKQILN
                     KLIFEEECILFDDLADQLFVSRSTLSHDFKHIREHLASYGLSIESKPYKGVYVVGEER
                     QKRHFIMDYFFSEHFYQNIHHFLSNDKSLALPLSFEELTIVVLDECRDSQLKLSDYII
                     QNLVIHLGLAIQRYQKGFTISPVTIDKEKYAEELAVATKIARRLSHRLEPQNRFPEEE
                     VVYIALHLISKTQLEVEKSSDRHLLRQALFEVLGRYDDEYGYQFSHDFSLIEGLLTHL
                     EVLIERLRHNLHIDNPLLDDIKTTYHDIFDLTQSLMAELSVFHSYSLSESEIAYVALH
                     LMASLERQKEKYKLNVLVICATGYGSAQMLKNRIKNELGQQVSISDVIGYYDLDNQKL
                     QGIDVIMSTIDLSGLVFKVPVITVSVFLTDQEVKEVKQRLADLRPSLQKTQVVERESN
                     LEKYFDQYFSEQRFLVVESAEKEMLLKQMISQLESEGLGNHQEFYKLIEARESLSTLV
                     FDKDIAVPHPLKPISEKHMISVAVIKNGLYWEEDYGQIRLVFLVSPSIYTNEGLSTIT
                     NRLVDLVDLPEVKKDIINSPDFETFKHVFLQRE"
     gene            3041..3355
                     /locus_tag="U1335_000694"
     CDS             3041..3355
                     /locus_tag="U1335_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018380105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose transporter subunit IIA"
                     /protein_id="HEM5231200.1"
                     /translation="MNTEELQMAAFGIILSSGNARSVIHEAFAAMREGDYDKAEELLE
                     AANADMLEAHHSQTGLLQEYASGTEVKVEIIMVHAQDHLMTTMTLREVALEMLALYRK
                     VG"
     gene            3370..3882
                     /locus_tag="U1335_000695"
     CDS             3370..3882
                     /locus_tag="U1335_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231201.1"
                     /translation="MSKGMASKKLQKTPEQLKQESKRKSQLFNRYMLFRYSLAVFFFA
                     NLYWLLVQLFQPSLYLILPSLMLIAIIIATAEQFKLYSAEESRLTKTEFVLRAQAILQ
                     GLIVVLVILGHISTLFPTFSNHTSAKLFVIGLQLLGLALVVLNIKRLEQVKQNTDKYY
                     LRFQIIRKYL"
     gene            3902..5251
                     /gene="celB"
                     /locus_tag="U1335_000696"
     CDS             3902..5251
                     /gene="celB"
                     /locus_tag="U1335_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose transporter subunit IIC"
                     /protein_id="HEM5231202.1"
                     /translation="MEEQKGFFGLLDKYLMGPMGKLASYKVVRAITAAGMAAVPFTIV
                     GSMFLVFSILPQAFSFWPVVADIFAASFDKFTPLYMVANTATMGVLSLYFALAIGYEL
                     TKIYAEEEELNLTPLNGALLSLFAFIMTVPQIIFEEGAMSAVSSLEEGAVIVDGWAMG
                     GGVTRFGTTGIFTAILMAVAAVLLYRMCVKNNWVIKMPESVPEGVSRGFTALIPSFVV
                     AFFVIFLNGVLVALGTDIFKVIAIPFSFVGNLTNTWIGLVIIYLLTQALWVVGIHGAN
                     IIFAFVSPIALANMSLNAAGERMIVAGEFSNMFVIAGGSGATLGLCIWLATRARSEQL
                     SAIGKAAIVPGIFNINEPLIFGLPIIYNPALAIPFMLAPIASMTVYYFSMKLNLINAV
                     VAQVPWPTPVGIGAFLGTADWRAIVVSIVCAVVAFLVYYPFIRAYDKQLLKEEAANA"
     gene            5656..7122
                     /gene="ascB"
                     /locus_tag="U1335_000697"
     CDS             5656..7122
                     /gene="ascB"
                     /locus_tag="U1335_000697"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM5231203.1"
                     /translation="MTKQFPKGFLWGGATAANQYEGGWNLGGRGPATSDTYIAVDPDK
                     RKDMSHFGKPVSRADVEFALADQEGLYPKRWGSDFYHRYKEDIALFAEMGFKTFRLSI
                     AWSRIFPKGDELEPNEEGLAFYDAVFDELNKYGIEPLVTLSHYEFPLHLALEYGGWKN
                     RKVIEFFVRYAETVFKRYQGKVKYWLTFNEINILGMVGYLSGGLLFEDGKNDLEAMYQ
                     AVHHQFIASSLATKAAHEIDPENKVGCMLARMENYAATCNPDDVLAALKKDQENLFYT
                     DVQVRGAYPSYMKRFFKENNIQVVFEPGDEAILKQYPVDFMSFSYYMTSITRALPDKD
                     KATAGNLMLGEANPYLEASDWGWQIDPVGLRITLNKLYDRYQVPLFIVENGLGALDKV
                     EEDGSIEDSYRIAYLEKHIQQMYEAIEDGVELMGYTPWGCIDLVSASTSEMSKRYGFI
                     YVDADDQGNGSFDRSRKASFYWYKDVIASNGANILTEK"
     gene            7131..7733
                     /locus_tag="U1335_000698"
     CDS             7131..7733
                     /locus_tag="U1335_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM5231204.1"
                     /translation="MTKTIYLMRHGETLFNTQKRVQGWSDSPLTERGIAQAQAVGQYF
                     KEQGIVFTSAYSSTQERATDTLKLVTAAPYQQLKGLKEMNFGIFEAREEELLPKPRPG
                     ARSFEDLLVPFGGEDIRAVGSRVKEAILSVAESDPADPILMVSHGAAIWGLVQVLEVT
                     FPPGVFLPNCAICRLTVENGQIRFEKLIDSAHDFKVYDFK"
     gene            7745..8362
                     /locus_tag="U1335_000699"
     CDS             7745..8362
                     /locus_tag="U1335_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM5231205.1"
                     /translation="MNYLYLMRHGQTRFNLQGRIQGACDSPLTEEGKEQARAAGRYFQ
                     EQAISFDKIYSSTQERACDTAELVTGRTDYVRLKGLKEQDFGAFEGQQEYLNPPLQGD
                     IGYGDYFVTFGGESYRDVRKRMEETIGGIMEEADNQSVLVVSHGAAIAQFFRQVLTDF
                     PRVRMRNCAILTFTYEDGHYDLQSIVDPVNKETLYQKEGKEKEKK"
     gene            8359..9798
                     /locus_tag="U1335_000700"
     CDS             8359..9798
                     /locus_tag="U1335_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018166879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM5231206.1"
                     /translation="MTVTKVFPKGFLWGGATAANQCEGAYDVDGRGLANVDVVPIGED
                     RAAIITGRKKMFDFEDGYFYPAKESIDMYHHFKEDIALFGEMGFKTYRLSIAWSRIFP
                     KGDELEPNEKGLQFYEDLFKECHKYGIEPLVTITHFDCPMHLIENYGGWRNRKMLEFY
                     ERLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENVEQVKYQAAHHELV
                     ASAIATKLAHEIDPENKVGCMLAAGQYYPHTCHPRDVWEALQEDRENYFFIDVQARGY
                     YPNYAKKKWERAGIEIEMTDQDLVLLKEHTVDFISFSYYSSRVASGDPVEKEKTAGNI
                     FASIKNPYLDASEWGWQIDPLGFRITINSIWDRYQKPLFVVENGLGAVDTPDENGYVE
                     DDYRIDYLRQHVLAMRDAIVEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDN
                     EGKGILKRSKKKSFDWYKKVIATNGADVE"
     gene            9881..10870
                     /locus_tag="U1335_000701"
     CDS             9881..10870
                     /locus_tag="U1335_000701"
                     /EC_number="6.3.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014677692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase"
                     /protein_id="HEM5231207.1"
                     /translation="MKYIVNNSNDPAYNIALEAYAFKELTDIDEIFILWINEPAIIIG
                     KHQNAIEEINKEFTDEKDIHVVRRLSGGGAVYHDLNNLNYTIISNKADEGAFDFKTFS
                     KPVIDTLATLGVEANFTGRNDLEIDGKKICGNAQAYAKGRMMHHGCLLFDVDMSVLAS
                     ALKVSKDKIESKGVKSVRARVTNINNELPEKMTVLEFKDAILNQMKQEYPDMDEYILS
                     EGDLARIQEIRDSQFATWDWTYGQTPEYTVERSVRYPAGKITTYIKAEKSVIESIKIY
                     GDFFGIGDVSDIEDLLVGTRYEYTDVLAKLQEIDTTHYFSRMTTEEVAKAIVA"
     gene            11042..11332
                     /locus_tag="U1335_000702"
     CDS             11042..11332
                     /locus_tag="U1335_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018030687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEM5231208.1"
                     /translation="MAKYEILYIIRPNIEEEAKNALVARFDSILTDNGATIVESKAWE
                     KRRLAYEIKDFREGLYHIVNVEANNDEALKEFDRLSKINGDILRHMIVKLDA"
     gene            11344..11838
                     /locus_tag="U1335_000703"
     CDS             11344..11838
                     /locus_tag="U1335_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEM5231209.1"
                     /translation="MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGER
                     EADFINVVIWRQQAENLANWAKKGALIGVTGRIQTRSYDNQQGQRVYVTEVVAESFQL
                     LESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
                     DLPF"
     gene            11871..12110
                     /locus_tag="U1335_000704"
     CDS             11871..12110
                     /locus_tag="U1335_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002983142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEM5231210.1"
                     /translation="MAQQRRGGFKRRKKVDYIAANKIEYVDYKDTELLSRFISERGKI
                     LPRRVTGTSAKNQRKVTTAIKRARVMALLPFVNED"
     gene            complement(12261..13568)
                     /locus_tag="U1335_000705"
                     /pseudo
     CDS             complement(12261..13568)
                     /locus_tag="U1335_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195628.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(13975..14631)
                     /locus_tag="U1335_000706"
     CDS             complement(13975..14631)
                     /locus_tag="U1335_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1129 domain-containing protein"
                     /protein_id="HEM5231211.1"
                     /translation="MSFTEINGLTKKNQEFIHIATNQLIKDGKSDSEIKELLEEILPT
                     IIEKQKTGVTARNLYGAPSEWAASKTISEQEKKDQVEYNENPWLMWLDSSLFMLAIIA
                     GINGLMNLFGQGAQYGLLTLFVIGFGVGAGMYLMYHFVYREQIKTGQRPKLLKAIAFL
                     GLATLAWSVVFILAALIPAAFNPVLPPLVTILIGAAAFGARYLLKKKYNIRNAMSPVQ
                     "
     gene            complement(14647..15591)
                     /locus_tag="U1335_000707"
     CDS             complement(14647..15591)
                     /locus_tag="U1335_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004250490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEM5231212.1"
                     /translation="MKQIFLSTMTDLEEIQTFEPGAWINLVNPSQSESMEVAEHYKID
                     IADLRAPLDAEESSRITVEDDYTLILVDVPILEERNNKTYYITIPLGIILTDDAIITT
                     CLEQLPLFEQFIHRRLRNFFTFMKSRFVFQILYRNAQLYLSALRTIDRKSEEIEKQLH
                     EATRNEELIVLMELEKTIVYFKASLKTNERLVKKLASSSRLLRKYEEDEDLLEDTLVE
                     TQQAIEMADIYGSILNSMTHAFASIISNNQNTIMKTLALVTIVLSIPTMVFSAYGMNF
                     KDNIIPFNDIPYAFWWIILFAFAISLSLTFYFIRKRWF"
     gene            16169..18994
                     /gene="uvrA"
                     /locus_tag="U1335_000708"
     CDS             16169..18994
                     /gene="uvrA"
                     /locus_tag="U1335_000708"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003037804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEM5231213.1"
                     /translation="MQENIVIHGARAHNLKNIDVTIPREKLVVVTGLSGSGKSSLAFD
                     TLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIEGLSPAISIDQKTTSRNPRSTVGTA
                     TEINDYLRLLYARVGVPYCINGHGAIAASSVEQIVDEVLELPERQRLQILAPIVRKKK
                     GQHKTIFEKVQKDGYVRVRVNGDVYDVSEVPELSKSKAHNIEVVVDRIVIKEGIRSRL
                     FDSIEAALRIADGYVIIDTMDEKEMLFSEYYACPVCGFTVPELEPRLFSFNAPFGSCS
                     DCDGLGMKLEVDTDLIVPDASKTLRDGALAPWNPISSNYYPQMLEQAMNHFGVDMDKP
                     FEELTEEEKNLIFNGSDGKEFHFHYENEFGGVRDIDIPFEGLITNINRRYRETNSDYT
                     RTVMKTYMNELTCGTCHGYRLNDQALSVKVGGEQGLHIGQLSDLSVADHLQVIENLTL
                     SENEATIATPIVKEIKDRLSFLNNVGLNYLTLSRAAGTLSGGESQRIRLATQIGSNLS
                     GVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADWLIDLGPGA
                     GVFGGEIVASGTPAQVAKNKKSITGQYLSGKREIPVPLERRVGNGRFLEVTGAKENNL
                     QDVTVRFPLGKFVAVTGVSGSGKSTLVNSILKKAIAQKLNRNLDKPGKFKSISGIEHL
                     DRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNEAKIRGYKKGRFSFNVKGGRC
                     EACSGDGIIKIEMHFLPDVFVPCEVCHGHRYNSETLEVHYKEKNIAQVLDMTVNDAVE
                     FFKHIPKIERKLRTIQDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYIL
                     DEPTTGLHTEDIAQLLKVLARFVDDGNTVLVIEHNLDVIKTADHIIDMGPEGGVGGGT
                     VVATGTPEEVAENPASFTGQYLKTKLK"
     gene            complement(19024..19197)
                     /locus_tag="U1335_000709"
     CDS             complement(19024..19197)
                     /locus_tag="U1335_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231214.1"
                     /translation="MAFKLKSDKKETEIKTIRFPSELVDRIEEAIVKKDVSFSSFVIQ
                     ACDYALNNMDKEQ"
BASE COUNT         5531 a         3696 c         4414 g         5601 t
ORIGIN      
        1 attgaaaacg cttgactttt ttttgtgaaa ggaatataat gatgacaaat aaatattgga
       61 agtgtgattg ctatgttaat tgttccactt tttttaaggt ttaacctttt taaaccacca
      121 agataatcgt tttttctagt tgtttgtaag tgtatcgtat cttggaaaag aggtttatta
      181 tggaatctat agttggaata attgttattg tagttgttat ggctgttctg gtttatttat
      241 tgattaatat gtggaaaatc agagcgactt cagctggtca gacggatgac actacgctat
      301 actttgtaag atttaagggg gtaaatccgc cagatttagc aaatagtagt gtttttaatc
      361 aagtagccaa aatcaaatgt gctaaaggag atacctatca agtcacttca acagtcaatg
      421 atgtgaaact gagagacgtg attatggatg agtttcagct caaatcttct gaggttgtag
      481 tttactatcc tcctcgtctt ttcttttatg catcatagtg gcaactcttc ggagttgcta
      541 tttttttgtt tctggagagt agcggaaaag cggtttattt tagtagcgaa atttccgtag
      601 tggtaaggaa atacttccta tggaaaatgt aagcgcgttc atgtaaaata aaatcataac
      661 aaaagtaaat aataaaatag ttggaggaaa atcctatggc aaaagctttg attatctgtg
      721 caggaggcat gtcctcttca cttattgcaa aaaaaacaca aactcttttg gaagaacaag
      781 ggcatacagt agaaatgaat gctgtcggtg ttccagaagg tggtaaaaaa ataaatgcgg
      841 cagagtatga cttgtacttg attagcccgc agacaaaaat gcattttaag caatttgaag
      901 aagcaggtaa gaaggtaggg aagccagttg tccaaattcc acctcaagct tatatcccaa
      961 ttccgatggg aattgaaaaa atggctaaat tggtcttgga taatatctag ttctttgcta
     1021 tcatagatgg tatattgatt tgaaaagagg ctagttatgc taaatactaa ggaaaaaatg
     1081 atattacagt atctttatca gcaccagaat ggtttttcaa ccagtaaagt attggcagag
     1141 catctttctt atacggatcg taccatccga acctatatca aaaaaatgat ttccgaaata
     1201 tccgaggaag aagcagggtt caccatttta tccaaacagg gatatggtta ccagctcaac
     1261 atcagtgatg aagagaaata ccatcgtttc ttatctgaaa accagctagt atttggggtg
     1321 gattatagtg atgcagaaaa tcgccataaa caaatcctga ataaattgat atttgaagaa
     1381 gaatgtatct tatttgatga tttggcggac cagctgtttg tcagtagatc aaccttgtct
     1441 catgatttca agcacattag ggagcatctt gcttcttatg gtttgagcat cgagagcaag
     1501 ccctataaag gagtctatgt ggttggtgaa gaacgtcaaa aacgtcactt catcatggac
     1561 tatttcttta gtgaacattt ttatcagaat atccatcatt ttttatccaa tgataaaagt
     1621 ctagccttac ctctatcttt tgaagagcta acaattgtag tcttagatga gtgtcgtgat
     1681 agtcagttga aactatctga ttatattatc caaaatttag ttattcattt aggtttagct
     1741 atccaacgct atcaaaaagg ttttacaatt tctcctgtca ccatcgataa ggaaaagtat
     1801 gctgaagaat tggcagtagc tacaaagatt gctaggcgat tatcccatcg attggaacct
     1861 cagaataggt tccctgagga agaagtggtc tacattgctc tacatttgat ttcaaaaaca
     1921 caattggagg tggagaagtc atcggaccgc cacttgttgc gccaagcact ttttgaagtt
     1981 ttagggcgtt atgatgatga atatggttat caattttcac atgatttttc cttgatagaa
     2041 ggtttgctaa cacatctgga ggttctcata gaacgactcc gtcacaatct ccatattgat
     2101 aaccccctac ttgatgatat taaaacaact tatcatgata tcttcgattt gacacaatca
     2161 ctaatggctg aactttcagt ttttcactct tatagcttgt ccgagtcaga aattgcctat
     2221 gtagctctac acttgatggc ttccttggaa cggcaaaaag aaaaatacaa attaaatgtt
     2281 ctggttatct gtgcaacagg ctacggtagt gctcagatgc tgaaaaatag gattaaaaat
     2341 gaacttgggc aacaggtgtc catatcagat gtcatcggtt actatgattt agataatcaa
     2401 aagttgcagg ggatagatgt gataatgtca accatcgact tatctggttt ggtgtttaag
     2461 gtccctgtta taactgtcag tgtcttttta acagatcagg aagttaagga agttaaacaa
     2521 cgattggcgg acttgagacc tagtctccaa aaaacacagg tagtggaaag agagagtaac
     2581 ttggagaaat actttgatca gtacttctca gaacaacgat ttttagttgt tgagtcagct
     2641 gaaaaagaaa tgttattaaa gcaaatgatt tcacagttgg agagcgaagg tcttggaaat
     2701 caccaggaat tttataaatt aattgaggcg cgtgaaagct tgagtacatt ggtatttgat
     2761 aaagatatag ctgttcctca ccccctaaaa cccattagcg aaaagcacat gatttctgtt
     2821 gcggttataa aaaatggtct atattgggaa gaagactatg ggcagattag attggttttc
     2881 ttagtgagtc catctatata tacaaatgaa ggtctatcaa ccattaccaa tcgattggta
     2941 gatttggtag atttaccaga agtcaagaaa gacataataa actctcctga ttttgaaaca
     3001 ttcaaacacg tttttttaca aagagaatag aaggtgacat atgaatacag aagaattaca
     3061 aatggctgca tttgggatca tcctcagtag tggcaatgca agaagtgtta tccacgaagc
     3121 ttttgctgct atgagagaag gtgattatga taaggcagaa gagttattgg aagcagccaa
     3181 tgctgacatg cttgaagccc accattctca aacgggtctc ctacaggaat acgcaagcgg
     3241 tactgaagtg aaggtagaga ttattatggt tcatgcgcaa gatcatttga tgacaacaat
     3301 gactttacgt gaggtagcgc ttgaaatgtt agctttgtat cgtaaagttg gttagaaaga
     3361 ggatatggga tgagtaaggg aatggcaagt aaaaagctac agaaaacacc agaacaatta
     3421 aaacaagagt ctaaacgcaa aagtcagctc tttaatcgct atatgctgtt tcgttatagt
     3481 ttagcagtgt tcttctttgc aaatctatac tggcttctgg ttcaattatt tcaaccaagt
     3541 ttgtatctaa tcctgccctc gcttatgctg attgcaataa tcattgcgac ggcagaacaa
     3601 tttaagttgt atagtgctga ggagtctcga ttgacaaaga cagaatttgt attaagggca
     3661 caagcaatct tgcaagggtt aattgtggtt ttagtgattt tgggtcatat ctcaaccctc
     3721 tttccaactt tttcaaacca tacatctgct aaactctttg ttattggctt gcagttgtta
     3781 ggtcttgctt tagttgttct caatataaaa aggttggagc aggtaaagca aaataccgat
     3841 aaatactacc tacgttttca aataataaga aaatatcttt aaaattttag gaggtcttct
     3901 catggaagaa caaaaagggt tctttggact attagataaa tatctgatgg gaccaatggg
     3961 taaactggca tcttacaaag ttgtacgtgc catcacagct gcaggtatgg ctgccgtacc
     4021 atttacgatt gttggttcga tgttcttggt tttcagtatc ttaccacagg cattttcatt
     4081 ctggccagtt gttgcagata tttttgcggc atcatttgat aaatttaccc cactctatat
     4141 ggttgctaat actgctacta tgggggtgct atcactttat tttgcacttg ctattggata
     4201 tgaattgaca aaaatttacg ctgaggaaga agaacttaat ttgactccgc ttaatggggc
     4261 gctcttatcc ctctttgctt tcatcatgac cgttcctcaa attatttttg aagaaggcgc
     4321 gatgtcggca gtcagctctc ttgaagaagg cgcagtaatt gttgatggtt gggcaatggg
     4381 tggtggcgta acacgctttg ggacaacagg tatcttcact gctatcttaa tggcggttgc
     4441 agcagttctt ttgtaccgca tgtgtgtaaa aaataactgg gtaattaaaa tgccagaatc
     4501 tgttcctgag ggtgtgtctc gtggtttcac tgctttgatt ccatcatttg tcgtagcctt
     4561 ctttgtaatt ttcttgaacg gtgtattggt tgcgcttggt actgatatat ttaaagttat
     4621 tgcaattcca tttagctttg ttggaaattt aacaaatact tggattggtt tagttattat
     4681 ctacttgttg actcaggcac tttgggtagt aggtattcac ggtgcaaata tcatctttgc
     4741 ttttgttagt ccgattgcac ttgcaaatat gtctcttaat gcagctggtg aacgaatgat
     4801 tgttgcaggt gaattttcaa acatgttcgt cattgcaggt ggttctggtg caacacttgg
     4861 actatgtatt tggttagcta ctcgtgctcg ttctgaacaa ttgagtgcga ttggtaaagc
     4921 agcaattgtt ccgggtattt tcaacatcaa tgaaccactg atttttggtt tgccaatcat
     4981 ctataatcca gcacttgcaa tcccattcat gcttgctcca attgcatcta tgacggtgta
     5041 ttacttctct atgaagttga atcttatcaa tgcagttgtt gctcaagtac catggccaac
     5101 tccagttggt atcggtgcct tccttggtac agctgactgg cgtgcaattg ttgtttcaat
     5161 tgtttgtgca gttgttgcct tccttgttta ctatccattc attcgtgcat acgataaaca
     5221 gttgctaaaa gaagaagcgg caaatgctta aactagagaa actccttgac ttcttctaag
     5281 tccaaggagt ttttctataa gagaatatca ggagacattg ttagataaac ataagatagt
     5341 atcatatttg ctttcttctt tctaaatcag aggagttgag gtagggcaag agaagaagat
     5401 tttttatagc tgacttgatg aagcgactat caatacacat ggaggtttaa aaaatctcta
     5461 ctacttttgc taatactgat tgagagaaaa cctctccctt gttccaagtt ttaattggga
     5521 tattatctaa tgttttaaga atagtgataa ttggaaatag catagaatag tatcagtttg
     5581 gcatattatc acgtaggaat gaagggagtt cttttgctat tatatagcta ataaagtcag
     5641 aaggagaatt gtgctatgac aaaacaattt ccaaaaggat ttctttgggg cggtgcgaca
     5701 gcggccaacc aatatgaagg tggttggaat ttgggaggtc gtggtccagc cacttccgat
     5761 acctatatag cggtcgatcc agataagcgg aaggatatga gtcactttgg taagcctgtt
     5821 tcgcgggctg atgtggaatt tgccttggca gatcaagaag ggctctaccc aaaacgttgg
     5881 ggttctgatt tctatcatcg ctacaaggaa gacatcgccc tctttgcaga aatgggcttc
     5941 aagaccttcc gcttgtcgat tgcctggtct cgtatttttc caaaaggaga cgagttagaa
     6001 ccgaacgaag aagggctggc cttttatgat gcggtcttcg atgagctgaa taaatatggt
     6061 atcgagccac tggtgaccct atcccactat gaatttcctc ttcatcttgc tctggaatac
     6121 ggcggctgga aaaaccgtaa ggtcatagag ttctttgttc gctatgccga gacagtattc
     6181 aaacgctatc agggtaaagt taagtattgg ctgactttta atgagatcaa tattttgggc
     6241 atggttggtt atctatcagg cggtctcctc tttgaagacg gaaagaatga cctagaagcc
     6301 atgtaccaag cggttcacca tcagtttatc gcttctagtt tggcaacaaa agctgcccat
     6361 gagattgacc cagaaaacaa ggttggttgt atgctggcac ggatggagaa ctatgcagcc
     6421 acctgcaatc cagacgatgt cttggcggcc ttgaaaaaag accaggaaaa tctcttctat
     6481 acagatgtgc aggtgcgtgg agcctaccca agttatatga aacgcttctt caaagaaaac
     6541 aatatccagg tcgtgttcga gccgggagac gaagcgattt tgaaacaata tcctgttgat
     6601 ttcatgagtt tttcttacta tatgacctcc atcacccgtg ctctgccaga caaggacaag
     6661 gcaacggcag gtaatttgat gttaggagag gccaatcctt atctggaagc gtcggactgg
     6721 ggctggcaaa ttgaccctgt cggacttcgt atcaccctca acaagctcta tgaccgttac
     6781 caagttcccc tcttcatcgt ggaaaatggt ctgggagcct tggataaggt ggaggaagac
     6841 ggcagtattg aggacagcta ccgtattgcc tacctagaaa aacacatcca gcaaatgtat
     6901 gaagctattg aagatggtgt ggagctcatg ggctataccc cttggggctg tatcgatctg
     6961 gtttctgctt ctaccagtga aatgtccaaa cgctacggct ttatctatgt ggatgcggac
     7021 gatcaaggca acggcagttt tgaccgatca cggaaggcat cattctactg gtataaagat
     7081 gtcattgcca gcaatggagc caatatattg acagaaaaat aggaggtctt atgacaaaaa
     7141 cgatttatct catgcgtcat ggtgaaaccc tctttaatac gcaaaaacga gtgcagggtt
     7201 ggtcggattc tcccttgaca gaacgtggta tcgctcaggc tcaagccgtt ggtcagtatt
     7261 ttaaggagca gggaatcgtc tttaccagtg cctattcttc cacgcaagag agggctactg
     7321 atacactaaa attagttacg gctgctccct accaacagct caagggactc aaggagatga
     7381 acttcgggat ttttgaagca agagaggaag aattacttcc caagcctcgt cctggagctc
     7441 gttctttcga agacctcttg gtgccatttg gaggcgagga cattcgagca gttggaagtc
     7501 gtgtcaaaga ggcgattctc tctgtcgcgg aaagcgatcc agctgatcca atcctcatgg
     7561 tcagtcatgg tgcagctatt tggggattgg tgcaggtttt ggaggtcacc ttcccaccag
     7621 gcgtcttcct gcccaactgt gccatttgcc ggctgactgt tgaaaatggg caaataagat
     7681 ttgaaaaact aattgattcc gcacatgatt ttaaggttta tgactttaag taaggaggtt
     7741 tagtatgaac tatctatact tgatgcgtca tggacagaca cggttcaacc tccaaggacg
     7801 gattcaaggt gcttgcgatt ctcctctgac agaagaagga aaggaacaag cacgggctgc
     7861 tggtcggtat tttcaagagc aggctatctc ttttgataag atttattctt ccactcaaga
     7921 acgggcctgt gatacggcag aattggttac agggaggacg gactatgtcc gcttgaaagg
     7981 attgaaagaa caggatttcg gagctttcga gggtcaacag gaatacctca atcctccctt
     8041 acagggagac attggctacg gtgattattt tgtcaccttc ggaggcgaat cctatcgaga
     8101 tgtccgaaaa cgtatggaag aaaccattgg aggcattatg gaagaagcgg acaatcaatc
     8161 cgttttagta gttagccatg gagccgccat tgcccaattt ttcagacagg tattgacaga
     8221 ttttccgcga gtgcggatgc ggaattgtgc catactgact tttacttatg aagacggtca
     8281 ctacgatttg caaagcattg tggatcccgt taataaagaa actctctatc aaaaagaagg
     8341 aaaggaaaag gagaaaaaat gacagtaaca aaagtatttc caaaaggatt tttatggggt
     8401 ggtgcaacag ccgccaacca atgtgaagga gcttacgatg tagacggacg tggacttgcc
     8461 aatgttgatg tagttccaat tggtgaagac cgagctgcca ttatcactgg tcgtaagaag
     8521 atgtttgact ttgaggacgg ttatttctat ccagccaagg agtctattga tatgtatcat
     8581 cacttcaagg aggatattgc tctctttggt gaaatgggct ttaagaccta tcgtctttca
     8641 atcgcctggt cccgtatttt tccaaaggga gatgaattgg agcctaatga aaaaggcctg
     8701 caattctacg aggacttgtt caaggaatgt cacaagtatg gtattgagcc cttggtgacc
     8761 atcacccact ttgactgccc gatgcacttg attgagaact acggtggctg gcgaaatcgt
     8821 aaaatgcttg aattttacga acgcctttgc cgtaccctct ttacacgcta caagggattg
     8881 gtcaaatatt ggctgacctt caacgagatc aacatgattc tccacgcacc atttatgggg
     8941 gctggtctct actttgaaga aggcgaaaat gtggagcagg tcaaatacca ggctgcccac
     9001 cacgaacttg ttgcctctgc cattgccaca aaattggccc atgaaatcga tccggaaaac
     9061 aaggtcggtt gtatgttggc tgcaggtcaa tactacccac acacctgcca cccacgtgat
     9121 gtatgggaag ctctgcaaga agaccgtgag aactatttct ttatcgatgt tcaggcacgt
     9181 ggctattatc caaactatgc caagaagaag tgggagcgtg caggtatcga gattgaaatg
     9241 accgaccaag acctagtact cctgaaagag catacggtgg actttatttc cttctcttac
     9301 tactctagcc gtgtggcttc tggagatcct gtagagaagg aaaaaacagc aggcaatatc
     9361 tttgcttcca ttaaaaatcc ttacctagac gcatcagaat ggggttggca gattgacccg
     9421 ctcggtttcc gcattaccat caattccata tgggatcgct atcaaaaacc actctttgtg
     9481 gttgaaaatg gtctgggagc agtcgacacg ccagatgaaa acggctatgt ggaagacgac
     9541 taccgtatcg actaccttcg ccaacatgtt ctagcaatga gagatgctat tgtagaagac
     9601 ggcgttgaac tcttgggata cactacttgg ggctgtattg acctagtgtc tgccggaacg
     9661 ggcgaaatga aaaaacgcta cggcttcatc tacgttgacc gtgacaatga aggaaaagga
     9721 atcctcaaac gctctaagaa aaaatcattt gattggtaca aaaaagtcat cgcgacaaac
     9781 ggagcggatg tggaataaag cagaaagaca agtcttgtgg cttgtctttt gttatcgttt
     9841 ccactataat aaaaattagt taacaataaa ggagttttgc atgaaataca tcgtaaacaa
     9901 cagcaatgac ccagcttaca acattgccct cgaagcctac gctttcaagg aattaacaga
     9961 tattgacgag atttttatcc tttggatcaa tgagcctgcc atcattatcg gtaagcacca
    10021 gaatgccatt gaagaaatca acaaggaatt cacagacgaa aaggacatcc atgtggttcg
    10081 acgtctgtca ggtggtggtg ctgtctatca tgacctcaac aaccttaact acactattat
    10141 ttcaaacaag gcggatgaag gagcttttga cttcaagacc ttctctaaac cagtgattga
    10201 tacccttgcg acactgggtg tagaggccaa tttcaccggc cgtaatgacc tggaaatcga
    10261 cggaaagaaa atctgtggta acgcccaagc ctatgccaaa ggtcgcatga tgcaccacgg
    10321 ttgcttgctc tttgatgtgg atatgtcagt cctcgcaagt gccctcaagg tcagcaagga
    10381 taagattgag tctaaaggcg tcaagtcagt ccgtgctcgc gtgaccaaca tcaacaacga
    10441 attgccagag aagatgacgg tcttggagtt caaagatgct atcctcaacc agatgaagca
    10501 agaatatcca gacatggatg agtatatctt gtcagaaggc gacttggccc gtatccaaga
    10561 aatccgtgat agccagtttg cgacatggga ttggacttac ggtcaaacac cagaatacac
    10621 tgtggagcgc agcgttcgtt acccagctgg taaaatcaca acctacatca aggctgaaaa
    10681 atcagtcatc gaatctatca agatttacgg agacttcttc ggaattggtg atgtatcgga
    10741 tattgaagac ttgttggtcg gcacccgtta tgaatacaca gatgtccttg ctaagttaca
    10801 agaaattgat acaactcact acttctctcg catgacaaca gaagaagtag caaaagcgat
    10861 tgtagcttaa ttcatagggc tgccctttgt ttgggcagtc tttatttttt gtgaaaatgt
    10921 tttcggaaaa ctgttttcac ttgcatattt tctatattat ggtataatta ttttctgtga
    10981 gtatccctca cttactcgtg gctagaccat gagtcattag accaaaagga ggaacatatc
    11041 aatggctaaa tacgaaattc tttatattat tcgtccaaac attgaagaag aagctaaaaa
    11101 cgctttggta gcacgctttg actctatctt gactgacaac ggtgcaacaa tcgttgaatc
    11161 aaaagcatgg gaaaaacgtc gccttgcata cgaaatcaaa gatttccgcg aaggtttgta
    11221 ccacatcgtt aacgttgaag ctaacaacga tgaagctctt aaagagtttg accgtttgtc
    11281 aaaaatcaac ggcgacattc ttcgtcacat gattgtcaaa cttgacgcgt aagaaggtag
    11341 attatgataa ataatgtagt attggttggt cgtatgaccc gtgatgcaga acttcgttat
    11401 actccgtcta accaagctgt tgcgactttt actttggcgg ttaaccgcaa ttttaaaaat
    11461 caaaacggtg agcgtgaagc ggactttatc aacgtagtca tttggcgtca acaagctgag
    11521 aatttggcga attgggctaa gaaaggtgct ctgattggtg ttactggtcg tatccagact
    11581 cgtagctatg acaatcagca agggcaacgt gtctacgtta ctgaggtagt tgcagaaagt
    11641 ttccaactct tggaaagccg tactgcccgt gaaggtcaag gtggaggcta ttcagctggc
    11701 aactcgtttg ctggaggaaa tgactacaac tcaccttatc aagcgcctgc acaatctaca
    11761 ccaaacttcg ctcgagaaga aagtccattt ggagcaagta atccaatgga tatatcagac
    11821 gatgacctac cattctaggt caaaaattaa taatataaag gagaacacac atggctcaac
    11881 aacgtcgtgg cggtttcaaa cgccgtaaaa aagttgacta tatcgcagct aacaaaattg
    11941 aatatgttga ttacaaagat actgagcttc ttagccgttt catttctgaa cgtggaaaaa
    12001 ttcttccacg ccgtgtaact ggaacttcag ctaaaaacca acgtaaagta acaacagcta
    12061 tcaaacgtgc tcgcgttatg gcacttctac cattcgtaaa cgaagattaa aaaaatgacc
    12121 ccaacgggtc attttttcat gagcatgaaa atacgaaagc gaattacagt ccttgaatgg
    12181 actgtttttt cacgagcatg aaaataagaa agcgagtaat ggtccaggct ctttgtcaac
    12241 tgtagtgggt agatgaaaag ctaacaccta gagaggacga aattcgttct ctctttttgt
    12301 atattcaaag caatatatat cttagtttta aagttcttaa agttcctaaa cccgaaagcc
    12361 tgtctcttga tgtccttgat gagtttattg gttgcttcga gtttagcgtt ggaataggga
    12421 atctccatgg tgttcatgat gtaagtttta tattttagaa acgttttaaa aacagtccta
    12481 aaggttggat tgacaagatt cagattgtcc tctagaagct cgaagaaatg tttcgagttc
    12541 ttctcttgga aatagaagag taaggtctgg tagagttcgt aatagaattt cagttcatct
    12601 gagaaattca atgtcttctg gacaacctct ctcggtgtta ccgtttgccc aaaagtgcga
    12661 gaaaagaagc gattcagaga cagttttcga ctatcttttt ggagaatacg ccagtgattt
    12721 ttcatggatc gataaggtag ggaacgcgta tcgaaagtct tcataatatc aattctagtc
    12781 gtcatcatag cacggctcag gtgttggata atgtgaaatc tatcaaggac aattttagct
    12841 cttgggagtg aaacagtctg ggaatagact gtttcagcct gagcctagaa attggagagc
    12901 gaaggggcaa gccaatttgt agtaggcgct aaacatagca tggttacgac ctcgacagtt
    12961 tctctgactg ccctaggata cttgtagaaa tagttcttga tggtggcttg gtggttgtct
    13021 tctagaatgg tcacaatgcg tctcgtctca aaatcctgag caataaaggc aagttttccc
    13081 ttgttccgac taaattcatc ccagctcaag acctttggta atttcgtaaa attatgctca
    13141 aattgaaact gagccagttt cctctggatg accgccacgg agatatgtaa tctcctagcg
    13201 atggctatat tggtcatgtt ttctgtatgg agttgtgtca ctttctccca aataggttgg
    13261 gaaatctgac agtttttctt gactagagtt gtctcagcta cagtcacttt ttggcaagat
    13321 ttgcattgaa accgccgttt cttaagcaag aggagggtcg gaaggcactg acaatccaaa
    13381 atcggaatct ttgacgactt ttgaaagtcg tacttgatac acattccttg gcaatgagga
    13441 caaccggggc tgtcgtaatc tagctttgcc ctgatttcta gatgggtctg atgtttcaaa
    13501 acaaagagaa ttttgatgtt tttgtctttg attccgatta gttctgtggt atgataaagt
    13561 tgttccatat gagtctttct aatgtgagtg tggttgcttt tcattatagg tcatatggga
    13621 ctttttgtat atactcaaaa tggctccata atctctacag tggatttacc cactacagaa
    13681 attatagagc catggtccag cggaccattt tttcttgcgc ccaagaaact ggaaaggggc
    13741 aacggcgagg atggaccatt ttttcatgag ctcgaaatta agaaagcgaa ttaagtcctt
    13801 gaatggactg tttcaaccca atccaagaag ttagaaagcg agtcacaatc tggggataga
    13861 ctgtttcagc agattacata gacaagcgac agcggataaa gttctcgggc gatttgatag
    13921 ctgaactgta tagataaaca aaagcgactg gaatattcca atcgctttgt tttattattg
    13981 aactggggac atggcattgc gaatgttata tttctttttc aagaggtagc gtgcaccgaa
    14041 agcagcagct ccgataagaa tagtaacaag cggaggtaga actgggttaa atgcggccgg
    14101 aatcagtgct gccagaatga aaacgactga ccaagccagc gtagcaagtc cgagaaaagc
    14161 gatagctttc agcaatttag gacgttgccc agttttaatt tgttctctgt aaacgaaatg
    14221 gtacatcaag tacatccctg caccaacacc gaaaccgatg acaaataagg ttaatagccc
    14281 atactgtgca ccttggccaa aaagattcat caaaccattg ataccagcaa taattgcaag
    14341 catgaaaaga ctagaatcta gccacatcaa ccatggattt tcattgtatt ccacttggtc
    14401 tttcttttcc tgttcagaaa ttgtcttact agcagcccac tcacttggtg ctccatagag
    14461 attgcgggca gtcacaccag ttttttgctt ttcaatgata gttggtaaaa tttcttccaa
    14521 gagttctttg atttcgctat cagactttcc atctttaatc agttggttgg tcgcaatatg
    14581 gataaattct tggttctttt ttgttaatcc gttgatttct gtaaatgaca tgttaatctc
    14641 cttaggttaa aaccatctct tacggatgaa gtagaaggtg agtgataagc tgattgcaaa
    14701 ggcgaaaaga ataatccacc aaaatgcata gggaatatcg ttaaaaggaa tgatgttgtc
    14761 cttaaagttc ataccgtatg cggagaagac catggttggg atagagagaa cgattgtcac
    14821 taatgccaag gttttcatga tggtattctg gttgttggaa atgatagatg cgaaagcatg
    14881 ggtcatggag ttcaggatag aaccgtagat gtctgccatt tcgatggcct gttgggtctc
    14941 gaccaaggta tcttcaagca aatcctcatc ctcttcatac ttacggagta gacgtgagga
    15001 actagcaagt tttttgacca aacgctcatt ggtcttgagg gaagccttga agtagacgat
    15061 ggttttttcc aattccatga gtacaattaa ttcttcattt cgagtggcct catggagttg
    15121 cttctcaatc tcttcgctct ttctgtcaat ggtccgtagg gctgacaagt agagttgagc
    15181 attgcggtag agaatttgga aaacgaaacg agacttcatg aaagtgaaga aattccgtag
    15241 acgacgatgg ataaactgct caaacagtgg caattgttcc aaacaagtcg tgataatcgc
    15301 atcatctgtt agaataattc ccaaaggaat agtaatataa tatgtcttgt tgtttcgttc
    15361 ttcaagaatt gggacgtcga ccaggatgag cgtatagtca tcttcgacag tgatacgaga
    15421 ggattcttcc gcatcgagcg gtgctcgcag gtcagcgatg tcaattttat agtgctcagc
    15481 aacttccata gactcgctct gggaggggtt gaccaaatta atccaagccc ctggttcaaa
    15541 ggtttgaatt tcttctaaat cagtcatggt tgatagaaaa atttgtttca tatctttgcc
    15601 ctccttttat ctttgttgcg ttaacgcaac ctctattata ccaaaaaatg tgcagtttcg
    15661 gaaaggtttt atatagaaat gtggtataat atgtagacat ttaagcgaat aagttgtacg
    15721 aactttttct aatctctcat ggtacagcta gatcctctta agaaaggaat tgaatgcgtg
    15781 ctaaaagcgt caagttttat agggttttct taacgtgaga ttttcaaaac gatatttttt
    15841 gaaaatcgag ctaatacaag atatagaaat tgcccatagg cagtttcgtc tggtgacgcg
    15901 gagctagttg accgtcacca gttatcttgt gaacgcactt atatctagaa aggaattgaa
    15961 cacgggctaa atgcagtgtc aaaaattgct ggtttcttca tgtttaagca tgtggaactg
    16021 gcttctgcgt cgtagacatc tgtgctttct tcggttttcg acctgtgaaa gcactagttg
    16081 tcttgacggg ggtgcgtctt cgaaatcaca gatttcggac ttaccgccta ttttgactgt
    16141 gcatttgacg ccctttgtat cttaaactat gcaagaaaat attgtgattc atggggcgcg
    16201 tgcccataat ttaaaaaata ttgatgtgac cattccgcgt gagaagctgg tggtggtgac
    16261 tggtttgtcg gggtctggta agtcgagttt ggctttcgat actctgtatg ccgaaggcca
    16321 acgccgctat gtagagtctt tgtctgccta tgctcgtcag ttcttgggca acatggacaa
    16381 gccagatgtg gattccatag agggtctcag ccctgctatt tccatcgacc aaaaaacgac
    16441 gtcgcggaat ccgcgttcga cagtcggtac agcgacggaa atcaatgatt atctccgttt
    16501 gctctatgct cgagttgggg tgccttattg tatcaatggg catggtgcca tcgcagcttc
    16561 ctcggtggag caaatcgtag atgaggtttt ggaattgcca gagcgtcaac gcttgcagat
    16621 tttagcgccg attgttcgta agaaaaaggg gcaacacaag accatttttg agaaagtgca
    16681 gaaggacggc tatgttcggg tacgggtcaa tggtgatgtc tatgatgtgt cggaagtgcc
    16741 ggagttgtcc aagagcaagg ctcataatat tgaagtcgtt gtcgatcgga ttgtcatcaa
    16801 agagggcatt cgttcgcggc tttttgactc cattgaggcg gccctgcgga ttgcggacgg
    16861 ctatgtcatc atcgacacca tggacgagaa ggaaatgctt ttctctgagt actatgcctg
    16921 cccagtatgt ggctttacag tgcctgagtt ggagcctcgt cttttctctt tcaatgcgcc
    16981 ttttgggtct tgtagcgatt gtgacggttt ggggatgaag ctggaggtgg atacggattt
    17041 gattgtccca gatgccagca agaccttgcg tgacggggct ttggctccgt ggaatcctat
    17101 ttcttctaac tactatcctc agatgttgga gcaagctatg aaccactttg gcgtggatat
    17161 ggacaagcct tttgaggaat tgacggaaga ggagaagaac ctgattttca acggttctga
    17221 cggtaaagaa ttccatttcc attatgaaaa tgagttcggt ggggtgcgtg atattgacat
    17281 tccatttgaa ggtttgatta ctaacatcaa ccgtcgctac cgtgaaacca acagtgatta
    17341 cacacggaca gttatgaaga cctacatgaa cgagttgacc tgtgggacct gccacggcta
    17401 tcgcctcaat gaccaagccc tgtctgtcaa agtcggtggc gagcagggac ttcatatcgg
    17461 gcagttgtct gatttgtccg tagcggatca tttgcaagtg attgaaaatc tgaccttgtc
    17521 tgaaaatgaa gccaccattg caacaccgat tgtcaaggaa atcaaggacc gcctgtcctt
    17581 ccttaacaac gttggtctga attacctgac gctttcacga gcagcaggta cgctttcggg
    17641 tggtgagagc cagcggattc gtctggcgac ccagattggg tccaacctgt caggcgtcct
    17701 ctatattctg gatgagccgt cgattggcct gcaccagcgg gacaatgacc gcctgattgc
    17761 cagtcttaag aaaatgcgtg atttgggcaa taccttgatt gtggtggagc atgatgagga
    17821 caccatgcgt gaggcggact ggttgattga ccttggtcca ggtgcgggtg tgtttggcgg
    17881 ggaaatcgtg gcttctggaa cgcctgccca agtggctaaa aataaaaaat ccattacagg
    17941 ccagtaccta tctggtaaac gtgaaatccc agttcctcta gaacgccgtg ttggaaatgg
    18001 tcggttctta gaggtaacag gtgccaaaga aaataacctg caggatgtga cggtccgttt
    18061 cccactcgga aaatttgtgg cggtgacagg ggtgtctggc tctggtaagt caactctggt
    18121 caattccatt ctgaaaaaag ctattgctca gaaactcaat cgcaatttgg acaagccagg
    18181 taaattcaag tctatttcag gaattgaaca cttggaccgc ctgattgaca ttgaccaaag
    18241 cccgattgga cgaacaccgc gttccaaccc agctacctac acaggtgttt ttgacgatat
    18301 tcgggacctc tttgctcaga ctaatgaagc aaaaatccgt ggctacaaga aaggacggtt
    18361 ctcctttaac gtcaaaggtg gacggtgtga ggcttgttct ggtgatggta tcatcaagat
    18421 tgaaatgcac ttcttgccag atgtctttgt gccatgtgag gtctgtcatg gacaccgtta
    18481 caattctgaa accttggaag tacattacaa ggagaaaaat atcgcccaag tccttgatat
    18541 gacggtcaat gacgcggtcg agttcttcaa acacattccg aaaattgagc ggaaactccg
    18601 caccattcaa gatgtaggtt tgggctatgt tactctaggt cagccagcaa cgaccctatc
    18661 aggtggggaa gcccagcgga tgaaactggc ttcggaactc cataagcggt caactggtaa
    18721 atccttgtat atcttggatg agccgacgac aggtctgcat acggaggaca ttgcccagtt
    18781 gctcaaggtc ttggctcgtt ttgttgatga tggcaatacc gtgctggtca tcgagcacaa
    18841 tctggatgtt atcaagacag ccgaccacat tatcgacatg gggccagaag gcggtgttgg
    18901 cggtggtacc gttgtcgcga caggaacgcc agaagaagtg gcggagaacc cggccagctt
    18961 tacaggccag tatttgaaaa ctaagttgaa gtaagcaagt aaaaaagagc catcggctct
    19021 tttttactgt tctttatcca tattattcaa ggcatagtca caagcctgaa tgacaaagct
    19081 tgagaaactg acatcttttt tgacgattgc ttcctcaatt ctatctacca actctgacgg
    19141 aaatcgaata gttttgattt ctgtttcttt tttatctgat tttaatttaa atgccattta
    19201 tttgctcctt gttacaagtg tatagcgaaa taaatgaata tg
//
LOCUS       DASGAC010000027        18064 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.027, whole genome shotgun sequence.
ACCESSION   DASGAC010000027 DASGAC010000000
VERSION     DASGAC010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 18064)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18064)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18064
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.027"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            114..2072
                     /gene="ligA"
                     /locus_tag="U1335_000710"
     CDS             114..2072
                     /gene="ligA"
                     /locus_tag="U1335_000710"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011837172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEM5231215.1"
                     /translation="MKTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELET
                     AHPELILPDSPTHRVGGKVLDGFEKYNHVYPLFSLQDAFSREELEAFDQRVRKEFPQA
                     TYICELKIDGLSISLTYEAGNLVVGATRGDGSVGENITENLKRVADIPLNLPEAVDIT
                     VRGECYMPKASFDRVNKQRQEAGEAEFANPRNAAAGTLRQLDTGVVAQRGLATFLYQE
                     ASPSEATSQSEVLRKLDSLGFVTNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVV
                     IKVNDLAIQEELGFTVKAPRWAVAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPV
                     QLAGTTVSRATLHNVDYIAEKDIRIGDTVIVYKAGDIIPAVLKVVDKYRKEQEIMPIP
                     SHCPSCQSDLQHYEDEVALRCINPICPSQLMSKLEHFASRDAMNIAGLGASIVEKLFG
                     AGLVHDVADIYKLTVDDLLTLEGFKEKSADKLYQAIQTSKSNSAERLLFGLGIRHVGS
                     KASKILVEKFGDLETLAFADQEAIASLEGLGQVIAKSLTTFFASEGAQQLLAELKEAK
                     VNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGANVAGSVSKKTNLVV
                     AGTDAGSKLTKAQELGIEIKDEAWLESL"
     gene            2083..3126
                     /locus_tag="U1335_000711"
     CDS             2083..3126
                     /locus_tag="U1335_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family lipid kinase"
                     /protein_id="HEM5231216.1"
                     /translation="MEERKRARLIYNPTSGQEIMKKNVAEVLEILEGYGYETSAFQTT
                     AEKDSAKNEATRAALAGFDLIIAAGGDGTINEVVNGIAPLEKRPQMAIIPTGTTNDYA
                     RALKVPRGNPVEAAKVIGKQQTILMDIGLAKNQKNSFHQEHYFINIAAAGTLTELTYS
                     VPSQLKTMFGYLAYVVKGAELLPQVQFTPVRVEHDEGVFEGSVSMIFVALTNSIGGFE
                     QIVPDAKLDDGNFTLLMVKTGNLFEILHLIRQVLDGGKHIESDLVEYIKTKSLSIENL
                     NPDNRLLLNLDGEFGGEAPVRLYNLSNHIEFFADTDLVSDHAITLDTDQMNREDMAKR
                     FIEETDHIDEAIK"
     gene            3263..3463
                     /locus_tag="U1335_000712"
     CDS             3263..3463
                     /locus_tag="U1335_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEM5231217.1"
                     /translation="MSLGALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGV
                     FLGVAFIEGTFFVTLAMTFVLK"
     gene            3500..4216
                     /gene="atpB"
                     /locus_tag="U1335_000713"
     CDS             3500..4216
                     /gene="atpB"
                     /locus_tag="U1335_000713"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEM5231218.1"
                     /translation="MEEHLSPTLTLGPVTFDLTMVLVSVITISIIFLLVFWASRRMEL
                     KPKGKQNVLEYVYELTINFTKGNLGDAEAKRYSLFFFTVFTFLLVANNLGLMTKLETA
                     EGHNLWTSPTANMAYDFGLATIATVFCHVEGIRRRGFKAYLKSFVTPWAMAPMNILEE
                     VTNLVSLALRLYGNIYAGEVLVSLLLQLSQQSALAYPIAFALNVVWTAFSVFISCLQG
                     YVFIMLVSMYLNKKISSESE"
     gene            4234..4740
                     /gene="atpF"
                     /locus_tag="U1335_000714"
     CDS             4234..4740
                     /gene="atpF"
                     /locus_tag="U1335_000714"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEM5231219.1"
                     /translation="MATTITMQSSTILGNFILVTVSFAVLIILIRVFAWDKITGIFEE
                     RANKIANDIDAAEEKLTAAANLVQQREDELVQGRIESQKIIQDAVERAKLEKKRILEQ
                     AEVEAQALKTKATMEIEAEKREAQENLRVQVAELAVDLASKIILEDLDQQAHSNLIDR
                     YLDKLGDK"
     gene            4741..5274
                     /locus_tag="U1335_000715"
     CDS             4741..5274
                     /locus_tag="U1335_000715"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEM5231220.1"
                     /translation="MNARENAIVQKYALSFVEKVSDHADIWDMYDQISDLISIIHDSK
                     LNRILLSATVSREEKADFVRTVRQSSFWQINDLIEDVIRDGHADLLLETLERVQLQIS
                     KFKNEFEARVVSVYPLTEAQKERLRHLVEQRFSLRVRNITEELDQSLLGGFIVTVNHK
                     VIDASVRTQLKDVRKKL"
     gene            5278..6798
                     /locus_tag="U1335_000716"
     CDS             5278..6798
                     /locus_tag="U1335_000716"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011889023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEM5231221.1"
                     /translation="MESGVLLINAQEISALLKQQIEGFQPDFDYTETGVVTYIGDGIA
                     RAQGLDNAMSGELLVFENGTIGMAQNLETNDVGIIILGQFTDIREGSVVRRTGKIMEV
                     PVGSALIGRVINPLGQPVDGLGEIRTSKTRPIEYPAPGVMQRKSVNEPLQTGLKAIDA
                     LVPIGRGQRELIIGDRQTGKTSVAIDAILNQKGQDMICIYVAIGQKESTVRTQVETLR
                     QYGALDYTIVVTASASQPSPLLFLAPYAGVAMAEEFMYEGKHVLIVYDDLSKQAVAYR
                     ELSLLLRRPPGREAYPGDVFYLHSRLLERSAKVSDELGGGSITALPFIETQAGDISAY
                     IATNVISITDGQIFLKDDLFNSGIRPAIDAGSSVSRVGGSAQIKAMKKVAGTLRIDLA
                     SYRELEAFTQFGSDLDAATQAKLNRGRRTVEVLKQPLHKPLPVEKQVLILYALTNGFL
                     DSVPIDDILAFEEELYAYFDLHYDGLLDVIRTTKDLPDTDELNAAIQAFKDQSVFK"
     gene            6810..7688
                     /locus_tag="U1335_000717"
     CDS             6810..7688
                     /locus_tag="U1335_000717"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000301235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEM5231222.1"
                     /translation="MAGSLNEIKSKIASTKKTSQITGAMQMVSASKLAKSEQLAQSFQ
                     IYASKVRQITTDLLRGELMASDTSNPMLIRRPVQKSGYIVITSDSGLKGSYNSSILKA
                     VMGMIEQDHDSKDEYEIIAIGSMGADFFRARGINPVFELRGLADNPSFEEVQKIISKS
                     VEMYKNELFDELYVCYNHHVNSLTSQVRVQQMLPVEDLDHNEADGYTATFELEPNREV
                     ILEQLLTQYAESTIYGAILDAKTAENAAGMTAMQTATDNAKNVINDLTIQYNRARQAA
                     ITQEITEIVAGASALE"
     gene            7708..9114
                     /gene="atpD"
                     /locus_tag="U1335_000718"
     CDS             7708..9114
                     /gene="atpD"
                     /locus_tag="U1335_000718"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016398931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEM5231223.1"
                     /translation="MSSGKITQVVGPVVDVAFAAEDKLPEINNALVVYKNDDSKQKVV
                     LEVALELGDGVVRTIAMESTDGLTRGMEVLDTGRPISVPVGKETLGRVFNVLGDTIDL
                     EESFSADFEREPIHKKAPAFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVG
                     KTVLIQELIHNIAQEHGGISVFTGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEP
                     PGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQP
                     TLATEMGQLQERITSTKKGSVTSIQAIYVPADDYTDPAPATAFAHLDSTTNLERKLTQ
                     LGIYPAVDPLASSSRALAPQIVGEEHYAVAMEVKRVLQRYQELQDIIAILGMDELSDE
                     EKTLVGRARRIQFFLSQNFNVAEQFTGMPGSYVPVAETVKGFKEILDGKHDHLPEDAF
                     RNVGSIEDVVAKAAKMKF"
     gene            9124..9540
                     /locus_tag="U1335_000719"
     CDS             9124..9540
                     /locus_tag="U1335_000719"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEM5231224.1"
                     /translation="MGQMTVQIVTPDGIKYDHHAAFVLVKTVDGEMGVYSGHEELIAV
                     LEIGEMKVRRVDDENHVDWIAVNGGIIEVNKDIITVISDSAERERDIDISRAERAKLR
                     AERELEEAQTARNIDMEMRATVALQRAINRIRVGKH"
     gene            9600..9824
                     /locus_tag="U1335_000720"
     CDS             9600..9824
                     /locus_tag="U1335_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1146 domain-containing protein"
                     /protein_id="HEM5231225.1"
                     /translation="MVISILQFFSHILFIYLAHHLLVTTVDWSRWLKVTGDNQRKINL
                     LILFLAIALGYLVSTFFLELLMMGRSFANM"
     gene            9848..11131
                     /gene="murA"
                     /locus_tag="U1335_000721"
     CDS             9848..11131
                     /gene="murA"
                     /locus_tag="U1335_000721"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEM5231226.1"
                     /translation="MDTIIVTGSKNGLKGQVEIEGAKNAVLPLLAATVLASQGQTKLT
                     QVPILYDVYTMNNVVRGLGVRVKFDEETKTIDIDATGKLGSETPYKYVSQMRASIVIL
                     GPILARNGYAKVSMPGGCTIGSRPIDLHLKGLQAMGAKIKQRAGYIEASAENLQGAHI
                     YLDFPSVGATQNLMMAATLSQGTTVLENAAREPEIVDLAIFLNKMGAKVKGAGTETIT
                     ITGVDQLHGAEHQVVQDRIEAGTFMVAAAMTGGDVLVKDAVWEHNRPLISKMLEMGVE
                     VTEEAEGIRVRSQVDKLKPVTVKTLPHPGFPTDMQAQFTALMAVAKGESTMIETVFEN
                     RFQHLEEMRRMDLHSEILRDTAIITGGQALQGAQVMSTDLRASAALILAGLVAEGETI
                     VGKLTHLDRGYYRFHEKLAALGATIERVSGEDENG"
     gene            11124..11315
                     /locus_tag="U1335_000722"
     CDS             11124..11315
                     /locus_tag="U1335_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEM5231227.1"
                     /translation="MDKDNLSYVGKNLILVAVVLLIAILVFILGLMVGYGVIGDGDNV
                     FAVLSPAKWQELIGKFTGK"
     gene            11345..12184
                     /locus_tag="U1335_000723"
     CDS             11345..12184
                     /locus_tag="U1335_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEM5231228.1"
                     /translation="MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYI
                     NQSQSSESSPSQELARSVLTEEVKKQLGHSIDWNGAGAFIINGNKTDLDASVSSKPYA
                     DNKTKTVQGETVPTVANALLAKSTRQYKSREETGNGSTSWTPPGWHQVQDLDGSYDHA
                     IDRGHLLGYALIGGLKGFDASTSNPKNIAVQTAWSNQARAEDSTGQNYFESQVRKALD
                     KNKRVRYRVTLIYAENNDLIPVGSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIA
                     VNE"
     gene            12599..13642
                     /gene="pheS"
                     /locus_tag="U1335_000724"
     CDS             12599..13642
                     /gene="pheS"
                     /locus_tag="U1335_000724"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEM5231229.1"
                     /translation="MSNIEQQLVELRQTTLEKLKEIQHQGEKELQDLRVAVLGKKGSL
                     TDLLKGLKDLSNEMKPIVGKQVNEVRDVLTAAFEETAQKVAAAKIQQQLASETIDVTL
                     PGRQVKVGKRHVLTQTSEEIEDIFLGMGFQIVDGFEVEKDYYNFERMNLPKDHPARDM
                     QDTFYITEEILMRTHTSPVQARTMDQHDFSKGALKMISPGRVFRRDTDDATHSHQFHQ
                     IEGLVVGENVSMGDLKGTLEMIIKKMFGEERQIRLRPSYFPFTEPSVEVDVSCFKCGG
                     DGCNVCKKTGWIEILGAGMVHPQVLEMSGIDSTKYSGFAFGLGQERIAMLRYGINDIR
                     GFYQGDVRFSEQF"
     gene            14079..14600
                     /locus_tag="U1335_000725"
     CDS             14079..14600
                     /locus_tag="U1335_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5231230.1"
                     /translation="MKIDPIQLEEVSVLQELAKQTFAETFAHDNDPNELEAFFDEAYS
                     VEVLTRELSDPNCQHYFLRVDNQIAGYLKLNQGPAQTEQELENAFEIQRIYLLQAFQG
                     RGLGKVLFEFALEKAEQSSCDWVWLGVWEHNYKAQKFYSKYGFEKFGQHEFAVGDKID
                     VDWLLKRPLHQKG"
     gene            14602..17001
                     /locus_tag="U1335_000726"
     CDS             14602..17001
                     /locus_tag="U1335_000726"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002897790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEM5231231.1"
                     /translation="MLVSYKWLKELVDFDATSHDLSEKMSTTGIEVEGVEQKSAGLSK
                     LVVGQVVSAEPIPDTHLNICQVNVGEEVTQIVCGAPNVKAGIKVIVALPGARIAGNYK
                     IKKGKIRGVESLGMLCSLSEIGVSDSVVPKVYADGIYHLPEDAVVGEPVFSYLDLDDE
                     IIELSITPNRADALSMRGVAHEVAAIYDSKVNFKPVVLEESDKKASEVIEVAIESDKV
                     TAYTARVIENVTIAPSPQWLQNLLMNAGIRPLNNVVDITNYILLYFGQPMHAFDFDKF
                     DGKKIVARQAKEGENLVTLDGEERDLISDDIVISVGDKAVALGGVMGGANTEIDNSSK
                     TVVLEAALFDGKSIRKTSGRLNLRSESSSRFEKGINVATLTEAMDTAAAMIAELAGGQ
                     VLSGIVSAGSVDTSDVPVTATIDYVNRSLGTNLDYAQIADIFRRLGMETTGDASQFTV
                     AVPRRRWDIRIPADLVEEIARIYGYNNLPTTLPKEDGTAGELTLIQHIRRQVRSLAEG
                     AGLTEIISYALTTPEKAVEFAARPTTVTELMWPMTVDRSALRQNMVSGMLETVAYNVA
                     RKNKNLALYEIGKIFEQSGNPKEDLPQEINKFALVLTGLVAEKDFQTPAVPVDFFHAK
                     GVLEAIFAHYKLAVDFVATSEIAALHPGRTAEIHLNGAVIGFVGQVHPQTAKDYGIPE
                     TYVAEINLDAIEEALQPAQPFAEISKFPAVSRDIALLLSSDVKHQDVLDAIAGAGVKR
                     LTKVTLFDVYAGSNIEAGKKSMAYNLTFQNPADSLTDEEVAKYMEKISKALVELGAEI
                     R"
     gene            17056..17322
                     /locus_tag="U1335_000727"
     CDS             17056..17322
                     /locus_tag="U1335_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2087 domain-containing protein"
                     /protein_id="HEM5231232.1"
                     /translation="MKAQDIHEKFFRDGKLIVIPKKLKSKQVLFAYLQEELAKKGSTF
                     TEKEVNAFLAEIYDDYAILRRYLVDYGYLSRDQYGLEYRIEEKR"
     gene            complement(17343..17645)
                     /locus_tag="U1335_000728"
     CDS             complement(17343..17645)
                     /locus_tag="U1335_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231233.1"
                     /translation="MYEFVLEYGSFPVKLIDGFVNNRSEIPDFLKEDEEMIARLNEIN
                     ELFHQLFLTIECKFDYIGKQFPDKIEHLRTLYHPLADDLLAKYGNQIELKIEPFIL"
     gene            17838..>18064
                     /locus_tag="U1335_000729"
     CDS             17838..>18064
                     /locus_tag="U1335_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTC domain-containing protein"
                     /protein_id="HEM5231234.1"
                     /translation="MKTRIVQKQFKRKETKYIVDKETFALLEKDLQKYMVSDEFATST
                     ITNIYFDNEEFDMIQDSIAKKNGREKIRMRV"
BASE COUNT         5212 a         3403 c         4332 g         5117 t
ORIGIN      
        1 ccaaaaattt tatatacaca ttatacattt tttactaaaa attatctaaa ggaatctgtt
       61 tttattgaag cgcaaatata gttcgcaccc tcaaatcatg atataatatt cttatgaaaa
      121 caagaatatc agaattagtt agcgtgctca atcaatacgc taaagagtat tatcaattag
      181 accaacctag cgtatcagat gcagaatatg atacgcttta tcgtgaatta gtagagctag
      241 aaacggctca tccagaactg attttaccag atagtcctac ccatcgggtc gggggaaagg
      301 tgctagacgg atttgaaaaa tataatcatg tttatcctct ttttagtttg caggatgcct
      361 tttctcgtga agagttagaa gcttttgacc agcgagttcg caaggaattt cctcaagcaa
      421 cgtatatctg tgaattgaag attgatggtc tatctatttc cctgacctat gaagcgggta
      481 atttagtcgt gggtgctaca cgtggtgacg gtagtgtcgg tgaaaatatc acagaaaatc
      541 tcaaacgagt ggctgatatt cctttgaacc taccagaagc tgtggacatc actgtccgag
      601 gtgagtgtta tatgccaaag gcttcctttg accgtgttaa caaacagcgt caggaggctg
      661 gtgaagctga atttgccaat ccgcgtaacg cagcggcagg aactcttcgc caattagaca
      721 caggtgtcgt ggcccagcgt ggacttgcaa ccttcctcta ccaagaagct agtccatctg
      781 aagcgactag tcagtccgaa gtgcttcgca agttagattc tttgggattt gtgaccaacc
      841 acgaatattg cttggcggag tcgattgatg acacgtggga ttttattgaa aaaatagcag
      901 agcgtagaga tgatttgccc tatgagatag atggtgttgt catcaaggta aatgatttag
      961 ctatacaaga agaactagga tttacagtta aagcgcctcg atgggcagta gcttacaagt
     1021 ttccagctga ggaaaaagaa gcagaaatct tgtcggttga ttggactgtt ggccgaacag
     1081 gtgttgtgac accaactgcc aaccttagtc ctgttcaact ggcaggaacg actgtcagtc
     1141 gagcgacctt gcacaacgta gactatatcg ctgaaaaaga tattcgtatt ggcgatacgg
     1201 tcattgttta taaggcagga gatattattc cagcagttct gaaagtggtg gacaagtatc
     1261 gaaaagagca agaaatcatg cccattccta gtcattgtcc gtcttgtcag agcgacctac
     1321 aacactatga ggacgaagtt gccctccgct gtatcaaccc tatttgtcct agccagctga
     1381 tgagtaagtt ggaacatttt gcaagtcggg acgccatgaa catcgcaggg ctaggggctt
     1441 caatcgttga aaaactcttt ggagcaggct tggtacacga tgttgctgat atttataaat
     1501 tgactgttga tgacctattg accttggaag gtttcaaaga aaaatcagct gacaagctct
     1561 atcaagctat tcaaacttct aagagcaact cagcagaacg cctcctattt ggactaggta
     1621 ttcgccatgt aggtagtaag gcaagtaaga ttttagtaga aaaatttggt gatttagaaa
     1681 ctctagcatt tgctgatcaa gaagcaattg cttcgctaga agggcttggt caggttatcg
     1741 ctaagtcttt gacaactttt tttgctagtg agggtgcgca acaactttta gccgaactta
     1801 aggaagctaa ggtaaactta acctatctcg gacaagtagt agatgaaaat gctgcgctat
     1861 cgggtatgac agttgtactg actggtaaat tggagcgaat gaaacgaaac gaagccaaag
     1921 ccaaattaga agctttaggg gcaaatgtag cgggatctgt ttctaaaaaa actaatcttg
     1981 tggttgccgg aacagatgca ggcagtaaat tgaccaaagc acaggagcta ggtattgaaa
     2041 taaaagatga ggcttggtta gagagtttgt aaaggtaaaa cgatggaaga aagaaaacgt
     2101 gctagactaa tatataatcc gacctcaggt caagaaatca tgaagaaaaa tgtggccgaa
     2161 gtattggaaa ttttggaagg ctacggttat gagacttcag ctttccaaac aactgctgag
     2221 aaagactctg caaagaatga agctacacgt gcggcgcttg caggctttga cttgattatc
     2281 gcggctggtg gagatggaac gatcaatgaa gtcgtcaatg gaattgctcc gcttgaaaaa
     2341 cgtccgcaga tggccattat accgactggc accaccaatg actatgcgcg tgccttaaaa
     2401 gttcccaggg gaaatcctgt agaagcagct aaggttattg gtaagcagca gaccatttta
     2461 atggatattg gtttagccaa aaatcaaaaa aatagttttc atcaagaaca ttattttatc
     2521 aatattgctg cggcaggtac acttacggag ttgacctaca gtgttcccag tcaacttaag
     2581 accatgtttg gctatttggc ctatgtggta aaaggagcag aactcctgcc acaagtacaa
     2641 tttacacctg ttcgtgtaga gcatgatgag ggcgtgtttg aaggctcggt ttcaatgatt
     2701 tttgttgcct taaccaattc aattggaggt tttgaacaga ttgttcccga tgctaagtta
     2761 gatgatggta attttacctt attgatggtt aaaacaggga atttatttga aattctgcat
     2821 ctgattcgtc aagtcttaga cggtggcaaa cacattgaga gtgatttagt tgaatacata
     2881 aaaaccaaga gcctatccat cgaaaatctt aacccggata accgtctact gctcaatcta
     2941 gatggagagt ttggtgggga agccccagtt cgtctgtaca acctatcaaa ccatatagag
     3001 tttttcgcag atacagatct ggtttctgac catgcaatca ctcttgatac tgatcagatg
     3061 aatcgagaag atatggccaa acgattcatt gaagaaacag accatattga tgaagctatt
     3121 aaataggaag aaaagatgaa atactctttt ctttttattt tacaaaaacg aattaaacgc
     3181 ttacaatggc ggtattttct tgacaaatag atgttttagg agtatcctta catggtatta
     3241 aattttaaaa ggagaattcg ttatgagttt aggcgcattg gcccttggat tggcctgtct
     3301 tggtgtaagt atcggtgagg gactgttggt ggcttcatac cttagttcga ctgcacgtca
     3361 accagaaatg caaagtaaat tgatggctgg tgtatttttg ggtgttgcct ttatcgaggg
     3421 aactttcttc gtaaccttgg ctatgacatt tgtcttgaaa tagtagaaaa tagagaaata
     3481 gaaaaggggg gaacctccat tggaagaaca tttaagtcca acccttaccc ttggtcccgt
     3541 aacctttgac ctgaccatgg tattggtttc tgtcattacc atttccatta ttttcttact
     3601 tgttttttgg gctagtcgtc ggatggagct caagcctaaa ggaaaacaga atgttttgga
     3661 gtacgtttac gaattgacca tcaattttac aaaagggaat cttggcgatg cggaagcaaa
     3721 gcggtattcc ttgttcttct ttacagtctt tacttttctt ttggttgcca ataatctagg
     3781 tttgatgacc aaattggaaa cagcagaagg acataatttg tggacttctc caacggccaa
     3841 tatggcttac gatttcggtt tggcaacaat tgcaacagta ttttgtcatg ttgagggtat
     3901 tcgtcgtcgc ggtttcaagg catacctcaa atcttttgtg acaccctggg ctatggctcc
     3961 aatgaacatt ttggaagaag tgaccaacct tgtgtcgctt gctcttcgtc tgtacggtaa
     4021 catttatgct ggtgaagtgc ttgtctctct tcttctacaa ttatctcaac aaagtgcact
     4081 tgcatatcca attgcctttg ctctgaacgt tgtttggaca gcattttctg tattcatttc
     4141 atgcttgcag ggatatgtat ttatcatgtt ggtatctatg tacttaaata aaaaaatcag
     4201 tagtgagagt gaataggaaa gggaaagaca actatggcaa caactattac aatgcaatct
     4261 agtaccattc ttggaaactt tatcttggta acagtctcat ttgcagtact tattattctt
     4321 attcgtgttt ttgcatggga taaaattaca ggtatttttg aagaacgtgc caataagatt
     4381 gcgaacgata ttgatgctgc agaagaaaaa ttaacagcag cagcaaacct tgttcaacaa
     4441 cgtgaagatg agttggtaca gggacgtatc gaaagtcaaa agattattca agatgcggtt
     4501 gaacgtgcaa aactagagaa aaaacgaatt ttagaacaag ctgaagttga ggctcaagct
     4561 ctaaaaacaa aagcgacaat ggaaattgaa gctgaaaaac gtgaagcaca ggaaaacttg
     4621 cgtgttcaag ttgctgaatt ggcagttgat cttgcaagca aaattatttt ggaagatttg
     4681 gaccaacaag ctcatagtaa cttgattgac cgttatttgg acaaactagg agacaagtag
     4741 atgaacgcta gagaaaatgc catcgtgcaa aaatatgctc tatcatttgt tgaaaaagtc
     4801 agtgatcatg cagatatttg ggatatgtat gaccagattt ctgacttgat ttccatcatt
     4861 catgatagta agctgaatcg aatcttgctg tcagcgacag tatcgagaga agaaaaggct
     4921 gactttgtaa ggacggtacg tcaatctagt ttctggcaaa tcaatgactt gattgaagat
     4981 gttattcgtg atggtcatgc agacttgctt cttgaaaccc ttgagcgtgt ccaattacaa
     5041 atcagtaaat ttaaaaatga atttgaagcc cgtgtggttt cagtctatcc gttgacagaa
     5101 gctcaaaaag agcgtctccg tcacttggta gaacaacgat tttccttgcg tgtacgcaat
     5161 atcacggaag aacttgatca aagtctcctc ggtggtttta ttgtaacggt taaccataag
     5221 gtaatcgatg caagcgttcg gacacagttg aaggacgtta gaaaaaaact ttagaaaata
     5281 gaaagtggtg ttcttttgat taatgcacaa gaaattagcg ctttactaaa acaacaaatt
     5341 gaaggctttc agcctgactt tgactacaca gagactggtg tcgtaaccta tatcggtgac
     5401 ggtatcgccc gtgcgcaagg tcttgacaat gccatgagtg gagagctttt ggtatttgaa
     5461 aatggcacca ttggtatggc acaaaactta gaaaccaacg atgttggtat catcattctc
     5521 ggacaattta ccgatattcg tgaagggtca gttgttcgtc gtactggtaa aattatggaa
     5581 gtaccagttg gttcggcttt gattggtcga gtcatcaacc cacttggtca acctgtggat
     5641 ggtcttggtg aaattcgtac tagtaagact cgtccgattg aatatccagc accaggtgtt
     5701 atgcaacgta agtcggttaa tgaaccgctt caaactggtc tcaaggctat tgacgctttg
     5761 gttccgattg gtcgtggtca gcgtgaattg attatcggtg accgtcagac agggaagaca
     5821 tctgtagcta ttgatgctat tctcaaccaa aaaggccaag acatgatttg tatctatgtg
     5881 gctatcggtc agaaagagtc aactgttcgt actcaggttg aaacccttcg tcaatatggt
     5941 gctttggatt acacaatcgt agtaactgcg tctgcttcac aaccgtctcc attgcttttt
     6001 ttggctcctt atgctggtgt tgcgatggca gaagagttca tgtatgaagg caaacacgtc
     6061 ttgattgttt acgatgattt gtcaaaacaa gcggtagctt accgtgaatt atctctcttg
     6121 cttcgtcgtc ctccgggtcg tgaagcctat ccaggggatg tattctactt gcacagtcgt
     6181 ttgctagagc gttcagcaaa ggtttcagat gaattgggcg gtggctccat tacagctcta
     6241 ccatttatcg aaacacaagc gggagatatt tcagcttaca tcgcgaccaa cgtgatttca
     6301 atcacggatg gacaaatctt cttgaaggac gatttattca actctggtat ccgtccagcc
     6361 attgatgcgg gttcttctgt atcacgtgta ggtggctctg cacagattaa ggccatgaaa
     6421 aaggtggcgg gtacccttcg tatcgactta gcttcttatc gtgaattaga agcctttact
     6481 caatttggtt cggatttgga tgcagcaact caggccaagc tcaaccgtgg tcgtcggact
     6541 gtagaagtgt tgaaacaacc attgcataag ccacttccag ttgaaaaaca ggttttgatt
     6601 ttgtatgctt tgacaaatgg cttcttggat tcagtgccaa ttgatgatat tttggcattt
     6661 gaagaagaac tgtacgcata ttttgatttg cactacgatg gtcttttgga tgttattcgt
     6721 acaacaaaag atcttcctga tacagatgaa ttgaatgctg ctatccaagc tttcaaagac
     6781 cagtctgtct ttaagtaaag gagtgaataa tggcaggttc tctcaatgaa atcaagtcaa
     6841 aaattgcatc tactaagaaa accagtcaaa tcaccggtgc catgcagatg gtttcggctt
     6901 ctaaactagc caaatcagag caattagcgc aatcctttca aatctacgct agtaaggttc
     6961 gtcagattac aacagacctc ttgcgtggag aattgatggc ttcagataca agcaatccaa
     7021 tgctgattcg ccgtccagtt caaaaatctg gttatattgt cattacctct gacagtggac
     7081 taaaaggttc ttataattcc agtattttga aggctgtgat gggaatgatt gaacaggacc
     7141 atgactcaaa agatgagtat gagattattg ctattggtag catgggagct gatttcttcc
     7201 gtgcccgtgg tatcaatcct gtctttgaat tgcgaggttt agcagacaac ccaagttttg
     7261 aagaggttca gaaaatcatt tctaagtctg ttgagatgta caagaatgaa ctctttgatg
     7321 agttgtatgt ttgttataac caccatgtca atagtttgac cagtcaggtg cgtgtacaac
     7381 agatgcttcc tgtagaagat ttggaccaca atgaagcaga tggttataca gctacctttg
     7441 agttggaacc aaaccgtgag gttattttgg aacaactctt gactcaatat gcagaatcaa
     7501 ctatttatgg agcgattttg gatgccaaaa ctgctgaaaa tgcagcaggt atgacagcca
     7561 tgcagacagc gacggataat gctaagaatg tcattaacga tttgacaatc caatacaata
     7621 gggctcgtca ggcagcgatt actcaggaaa ttactgagat tgtagctggg gcctcagccc
     7681 ttgagtaata gaaatagagg aaatagaatg agttcaggca aaattactca ggttgtcgga
     7741 ccagttgtag acgttgcgtt tgcagcagaa gataaacttc ctgagattaa caacgcactc
     7801 gttgtatata aaaatgatga ttccaaacaa aaagtcgtgc ttgaagtggc tttggaactt
     7861 ggtgatggcg ttgtacggac cattgccatg gaatcaacgg atggattgac acgtgggatg
     7921 gaagttctcg atacaggtcg tcccatctct gttccagtcg gtaaagaaac gctgggtcgt
     7981 gtcttcaatg tgttgggaga tactattgac cttgaagagt ctttttcggc agattttgaa
     8041 cgtgagccta tccataagaa agcgccggct tttgacgaat tatctacttc aagcgaaatt
     8101 ttggaaacag ggattaaggt tatcgacctc ctagcacctt atctaaaagg tggtaaggtt
     8161 ggtctcttcg gtggtgccgg tgtaggtaaa accgtcctta tccaagaatt gattcacaat
     8221 attgcccaag aacacggtgg tatctctgta tttaccggag ttggtgagcg tacccgtgaa
     8281 gggaacgatc tttactggga aatgaaagaa tcaggtgtta ttgaaaaaac ggccatggta
     8341 tttggtcaga tgaatgagcc accaggagcc cgtatgcgtg ttgctcttac tggtttgacc
     8401 attgcggaat acttccgtga tgtggaaggg caggatgttc ttctgttcat cgataatatc
     8461 ttccgtttca cgcaggctgg ttcagaagtg tctgccctct tgggtcgtat gccgtcagcc
     8521 gttggttatc agccaacact tgcaactgag atgggacaat tgcaggagcg tattacttca
     8581 accaagaagg gttctgttac gtctattcag gctatttacg tacctgcgga tgactataca
     8641 gacccagctc cagcgacagc tttcgctcac ttggattcaa caactaactt ggagcgtaag
     8701 ttgactcagc ttggtatcta ccctgcggtg gatccattgg cttcgtcatc acgtgcactt
     8761 gctccacaaa tcgttggtga agagcactat gcagtagcta tggaagtaaa acgtgtcctt
     8821 caacgttacc aagaattgca agatattatt gccattctcg gtatggatga attgtcagat
     8881 gaagagaaga ccttggttgg tcgcgctcgt cgtatccaat tcttcctctc tcaaaacttc
     8941 aacgttgcgg agcaatttac aggtatgcca ggttcttatg tgccagtagc tgaaacggtg
     9001 aaaggcttta aggaaatctt ggacggcaaa cacgaccatc taccagaaga tgccttccga
     9061 aatgttggtt caattgagga tgtggtcgct aaagctgcta aaatgaaatt ctagaggtgg
     9121 cttatgggac aaatgactgt acaaatcgta acaccagacg gtatcaaata tgaccatcat
     9181 gcagcatttg ttttggtcaa aacggttgat ggtgagatgg gtgtctattc tggacatgaa
     9241 gaactgattg cagttttgga aatcggtgaa atgaaagtgc gtcgtgttga tgatgaaaac
     9301 catgtggact ggattgcggt caatggtgga atcattgaag tcaacaagga tattattacg
     9361 gtcatttctg attccgctga gcgggaacgg gatattgata ttagtcgtgc agaacgtgcc
     9421 aaattgcgcg cggaacgtga attggaagaa gcacagactg ctcgtaatat tgatatggag
     9481 atgcgtgcaa cagtcgccct ccaacgtgcg ataaatcgta ttcgtgtcgg aaaacattaa
     9541 tatacatggg attgaacttg gttcagttcc attttttaat ttcatggtat aatggaaaca
     9601 tggtaatttc aattttacag ttttttagtc atatattgtt tatctatctg gctcatcatc
     9661 tcttggttac aacagttgat tggtcacggt ggttgaaggt gactggggac aatcagcgta
     9721 aaatcaattt gctgattctc tttctggcaa tagcactggg atacttggtc tcgactttct
     9781 ttttagaatt gttgatgatg ggacgctctt ttgcgaatat gtgatttaag taagaaaagg
     9841 ataagaaatg gatacaatta ttgttacagg tagtaaaaac ggtttgaaag gacaggttga
     9901 gattgagggg gcgaagaatg ccgttctgcc tttattggca gcaacagttc tagcaagtca
     9961 agggcaaacc aaattgactc aagtgcctat tttgtatgat gtctatacaa tgaataatgt
    10021 tgtacgtggt ctaggagttc gtgtgaaatt tgacgaggaa acaaagacta tcgatattga
    10081 cgcaacaggt aaacttggta gcgaaactcc ttataagtat gtgagtcaaa tgcgcgcctc
    10141 tattgttatt cttggtccga ttttggcacg caatggttat gctaaggttt ctatgccagg
    10201 aggttgtaca attggtagcc gtccaataga tttgcactta aaaggtttgc aagctatggg
    10261 ggctaaaatt aaacaacgag ctggttatat tgaagcgagt gcagagaact tgcagggagc
    10321 tcatatctat cttgatttcc caagtgttgg ggcaacgcaa aacttaatga tggctgcaac
    10381 tctgtcgcaa ggtaccactg ttttagaaaa tgcagcgcga gaacctgaaa ttgttgactt
    10441 ggccattttc ctaaacaaaa tgggtgctaa ggtcaagggg gcaggtacag aaaccattac
    10501 catcacaggt gttgaccagc tacatggagc agaacatcaa gtggtgcaag atcgtatcga
    10561 agcgggtacc tttatggtgg cagcggcaat gactggtggc gatgtcttgg tcaaggatgc
    10621 tgtctgggag cacaatcgtc cactcatttc taagatgttg gaaatgggag ttgaggtgac
    10681 ggaagaagct gaagggattc gagttcgttc gcaagtggat aagcttaaac ctgtaacagt
    10741 aaaaactttg ccccacccag gcttcccaac ggatatgcag gctcaattta cagctctaat
    10801 ggcagttgca aagggtgaat cgaccatgat tgaaacggta tttgagaatc gtttccagca
    10861 tttggaagag atgcgtcgga tggacttaca ttcggaaatt ttacgagata cagctatcat
    10921 cacgggagga caagctctgc aaggtgctca ggttatgtct actgatttgc gagctagtgc
    10981 tgcattgatt ttggcaggtt tggttgctga aggtgagacg attgtaggta aattaacgca
    11041 cttagatcga ggttactatc gttttcatga gaaattagct gctttaggtg caacgattga
    11101 acgtgtgagt ggagaagatg aaaatggata aggataatct tagctatgtt ggtaaaaatt
    11161 taatcttagt agcagttgtt ttgttgattg ctattttggt gtttatttta ggattaatgg
    11221 ttggttacgg tgtcatagga gatggagaca atgtatttgc ggtgttgtca ccagctaagt
    11281 ggcaagaact aatcggtaaa tttacaggaa agtaggctgg acctgctttt tttatggaga
    11341 gaaaatggcg aagaaaaatg taaaaaaaca agcgatgagt ctgctcagct tattggctac
    11401 gattgttgta gtggcggggg gctatctttt aagtgataac aagagcagta acgttgctga
    11461 ttattcctat tatatcaatc agtcgcagag cagcgagtca agtcctagtc aggaactagc
    11521 tagatctgta ttgactgagg aagttaagaa acagcttgga cattcaattg actggaatgg
    11581 agcgggtgct tttatcatca acggaaataa gactgattta gatgcttcag tctctagcaa
    11641 gccctatgcg gataataaga caaagactgt gcagggagaa acggttccaa cagtggcaaa
    11701 tgccctttta gccaaatcaa cgcgacagta taagagtcgt gaagaaacag gaaatggttc
    11761 gacttcatgg actccgcctg gctggcatca ggtacaggat ttggatggat cctatgatca
    11821 tgcgattgat agggggcatc tgctgggcta tgccttgatt ggcggtttaa aaggctttga
    11881 tgcttcaacc agcaatccta agaatattgc agttcaaaca gcttggtcca atcaggcaag
    11941 ggctgaggat tcgacggggc aaaactattt tgagagtcaa gttcgtaaag ctttggataa
    12001 gaacaaacgt gttcgctacc gtgtaaccct tatttatgca gaaaacaatg acttgattcc
    12061 agtaggaagt catctagagg caaaagcagc agatggtagc ttagagttca atgtatttgt
    12121 tccaaatgta cagagcggcc tcagtatcaa ctatcatagt ggggaaattg cagtaaatga
    12181 gtaaagaaat caattgccaa acattcttat ttttgataga atattcttaa ttgaatagaa
    12241 gtctgtgaga ctagtacacc tatggaaact gctcagggag ttgagccgtg actgcaagct
    12301 caatcagtga aagttggtcg aattcactca cacaaggact tagaacctgt attcacagtt
    12361 cagcacttcc atctaaggct agtttttcag ctactcatca ttagtttttt tcaaaataca
    12421 gtcagtattc cctcaaaaaa cagccttgat tagcgaaaaa ccatctctta tgtgcaagca
    12481 ctttacttgt gaatacaggt tcatagaact aaggtctgcc ttgcagatga aaacggatgg
    12541 taccgcgtga caacgctccg atacgagtgg tgtcatgcgt ttttttattg gaggaattat
    12601 gtcaaacatt gaacaacagt tggtggaatt acgccaaaca acacttgaaa agctaaaaga
    12661 aatccagcac caaggcgaaa aagaactaca agacctgcgt gttgcggttt tgggtaaaaa
    12721 agggtccttg actgacttgt tgaaaggctt gaaggaccta tctaacgaaa tgaaaccaat
    12781 cgttggtaag caggtcaatg aagttcgcga tgtgctgaca gctgcctttg aagaaacagc
    12841 tcagaaggtt gcggcagcaa aaatccaaca gcaattagca tcagaaacta ttgatgtgac
    12901 cttgccaggt cgtcaggtta aggtcggaaa acgccatgtc ttgacccaaa cttctgaaga
    12961 aatcgaagat attttcttgg gcatgggctt ccaaatcgtt gatggttttg aagtggaaaa
    13021 agactactac aattttgagc ggatgaattt gccaaaagat cacccagccc gtgatatgca
    13081 agacaccttc tacatcacag aagaaatcct tatgcggacc catacatcac ctgttcaggc
    13141 tcgaaccatg gaccagcatg atttttctaa aggtgccttg aagatgattt cgcctggacg
    13201 tgttttccgt cgtgatacgg atgatgcgac ccacagccac cagttccacc agattgaagg
    13261 tttggttgtt ggtgaaaatg tatccatggg cgatctcaaa ggtacgcttg aaatgattat
    13321 caagaaaatg tttggtgaag agcgtcagat tcgcctgcgt ccatcttact tcccgttcac
    13381 tgagccctct gttgaggtag atgtttcctg cttcaagtgt ggtggtgacg gctgtaacgt
    13441 atgtaagaaa acaggctgga ttgaaatcct cggtgccggc atggtccacc cgcaagtatt
    13501 ggaaatgagt ggcattgact caaccaagta ctctggattt gccttcggtc ttggtcaaga
    13561 acggattgcc atgctccgtt acggtatcaa cgatattcgt ggattctatc aaggcgatgt
    13621 acgattctcg gagcagtttt aacgtagcac tacttaaggc tgacaaagtc agctcttaag
    13681 tagacggaaa tcgctgctct gcgactttcc tggctacctt actaggattt caagcaaaaa
    13741 atatcgtttt gcttgaaatc cgtcgtgatt tagtaagttt gtcaggttgt ttaaggtgaa
    13801 aaacggtagc cgctatggcg gtctacctac tcccctcact aggtttagag ttgaaaaagt
    13861 atcgctttca accttagaac gtcgtaatct cgcactattt aaggtgtggg aatcgctgct
    13921 ctgcgacttt cctagctacc ttactaggct ttcaagcaaa aaatatcgtt ttgcttgaaa
    13981 tccgtcgtaa tccgataaag ttagtagatt gttgattgag agaagcggta gctgctctag
    14041 cagcttactt aacccagtta gaaatgagag gcaatgagat gaagattgac cctatacaat
    14101 tagaagaggt ttccgttttg caggagttgg ccaagcagac ctttgcagag accttcgctc
    14161 acgataatga tccgaatgaa ctggaagctt tcttcgatga ggcttattcc gtggaggttt
    14221 tgacaaggga gttgtcggac cccaattgcc agcactattt tctaagagta gataatcaga
    14281 tagctggtta tctcaagcta aaccaaggtc ctgcccagac agaacaggaa ttggaaaatg
    14341 cctttgagat ccagcgtatc tatctcttgc aggcttttca aggtcgcggt cttgggaagg
    14401 tcttgtttga atttgctttg gaaaaagcag agcagtctag ttgtgactgg gtctggctgg
    14461 gagtttggga acataattac aaggctcaga aattctattc caaatacgga tttgaaaaat
    14521 ttggccagca tgaatttgcg gtcggtgata agattgatgt ggattggcta ttaaaacggc
    14581 ctttgcacca gaaaggataa tatgttagta agttacaaat ggttaaaaga actcgttgac
    14641 tttgatgcga caagtcatga cttgtctgaa aaaatgtcaa caacaggaat tgaagtagaa
    14701 ggggttgagc aaaagagtgc tggcctgtct aagttggttg ttggtcaggt tgtgtctgct
    14761 gagcccattc cagataccca cctcaatatt tgtcaggtaa atgtgggtga ggaagttacg
    14821 caaattgttt gcggtgctcc aaatgtgaaa gctggtatca aggtgatcgt cgctctgcca
    14881 ggagctcgta tcgctggcaa ctacaagatt aagaaaggca aaatccgcgg agttgagtcc
    14941 ttgggtatgc tctgctcatt gagcgaaatc ggcgtgtccg actcagttgt gccaaaagtc
    15001 tatgcggacg gcatttacca cttgcctgaa gatgcagtcg tgggtgagcc agtcttttca
    15061 tacttagacc tcgacgacga gattattgag ttgtccatca caccaaaccg tgccgacgcc
    15121 ctctctatgc gtggtgtggc tcacgaagtg gcagctatct atgacagcaa ggtcaacttt
    15181 aagcctgtgg tcttggaaga aagcgacaag aaagccagcg aagtgattga agtggccatt
    15241 gagtcagaca aggtgactgc ctacacggcc cgtgttattg aaaatgtgac catcgcaccg
    15301 agcccacagt ggttgcaaaa cctgctcatg aacgcaggta ttcgcccgct caacaatgtg
    15361 gtggacatca ccaactacat cttactctac ttcggtcagc caatgcacgc ctttgacttt
    15421 gacaagtttg atggcaagaa aatcgtggct cgccaggcaa aagagggtga gaacttggta
    15481 actcttgacg gggaagagcg tgacttgatt agtgatgaca tcgtgatttc cgttggggac
    15541 aaggcggttg ccctcggtgg tgtcatgggt ggtgccaata cagaaattga caatagctct
    15601 aaaactgttg tgctggaagc tgccctcttt gacggcaagt ctatccgcaa gacctcaggt
    15661 cgcctcaacc ttcggtctga gtcctcatct cgctttgaaa aaggcatcaa cgtagcaact
    15721 ttgacggagg ctatggacac agcggctgct atgattgcgg aactggctgg cggtcaggtc
    15781 ttgtctggca tcgtttctgc gggcagcgtg gacacttcgg acgtcccagt cacagcgacc
    15841 atcgattacg ttaaccgctc gctcgggacc aaccttgact atgcccaaat cgcagacatt
    15901 ttccgtcgtt taggcatgga aacaactggc gatgcaagtc agtttacagt agcagtacca
    15961 cgtcgtcgtt gggacattcg cattccagct gacttggtag aggaaatcgc tcgtatttat
    16021 ggctataata atctgccgac cactcttcca aaagaggacg gaacagcagg tgagttgacc
    16081 ctgatccagc acatccgtcg ccaagtgcgt agcctggcag aaggtgcagg tctgacagaa
    16141 atcatttctt acgctctgac gacgcctgag aaggcagtgg agtttgcggc tcgtccaacc
    16201 acagtcaccg aactcatgtg gccgatgaca gttgaccgct cagcccttcg tcagaacatg
    16261 gtgtctggta tgctggaaac agtagcctac aacgtggctc gtaagaacaa gaatttggcc
    16321 ctctacgaaa tcggaaaaat ctttgaacag tctggaaatc caaaagaaga cctgccacaa
    16381 gaaatcaata agtttgccct tgttttgact ggtttggtag ctgagaaaga cttccagaca
    16441 ccagctgtac ccgttgattt cttccatgcc aaaggggttt tggaagctat ctttgctcat
    16501 tacaagttgg cagttgactt tgtagcgact agtgagattg ctgctctgca cccaggtcgg
    16561 acagctgaaa tccatttgaa tggggcggtt atcggctttg tcggtcaggt acatcctcaa
    16621 acggctaagg actacggtat tcctgaaacc tatgtggctg aaatcaatct ggatgcgatt
    16681 gaagaagcac tccagcctgc tcagccattt gccgaaatct ctaaattccc agcggttagc
    16741 cgtgatattg ccctgctttt gagcagtgat gtcaaacatc aggatgtctt ggatgccatt
    16801 gctggtgcgg gcgtgaaacg cttgaccaag gtgaccctct ttgatgtcta tgcgggcagc
    16861 aatattgagg ctggtaagaa gtctatggct tacaacctga ccttccagaa tcctgcggat
    16921 agcctgacgg atgaggaagt ggctaagtat atggagaaaa ttagtaaggc tttggtagag
    16981 cttggtgctg aaattcgtta aaatgtaaat cttgtgaaat cctagtctgc gagctaggat
    17041 ttttgggagg gagatatgaa ggctcaagat attcacgaaa aatttttccg agatggaaag
    17101 cttatcgtta ttcctaagaa gttgaaaagt aagcaagttt tgtttgccta tttacaagaa
    17161 gagttggcta agaagggctc aacattcacc gaaaaagagg ttaatgcctt tctagctgag
    17221 atctatgatg attatgctat tttaagacgc tacttggtgg attatggcta cttatcgcgt
    17281 gaccaatatg gtttggaata cagaatagaa gaaaagagat gattgcggtc atctcttttg
    17341 tcttacaaaa taaagggttc aatcttcaac tctatctggt tgccatactt ggctagtaaa
    17401 tcgtctgcca ggggatgata gagtgttctt aggtgttcaa tcttgtcagg aaattgtttt
    17461 ccgatgtagt caaacttgca ctcgatggtt aagaaaagtt ggtggaagag ttcgttaatc
    17521 tcattcaagc gggcaatcat ttcttcgtct tctttgagaa aatcaggaat ttctgagcga
    17581 ttgttgacaa aaccgtcgat gagttttacg gggaaagagc cgtattctag gacaaattcg
    17641 tacatggggt tctccttgcc ttgctattga taggactatt gtagcataga ttagaatgtg
    17701 acaaaagaat ttcaacttta ttgtagttta agttttgttt aattttattt tcagtttcat
    17761 ttaaagcttg gccggtaaac tatatcttgt aaacaagaca gggacctgtc aaaatttagg
    17821 atagaagagg cacaataatg aaaacaagaa tcgtacaaaa acagtttaag cgtaaagaaa
    17881 caaaatatat cgttgataaa gaaacttttg ccttgctaga aaaagatttg cagaaatata
    17941 tggtttcaga tgagtttgca acttcaacca ttacgaatat ttatttcgac aatgaagaat
    18001 tcgatatgat tcaagattcc attgccaaaa agaatggacg agaaaaaatt cggatgcgtg
    18061 tcta
//
LOCUS       DASGAC010000028        17360 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.028, whole genome shotgun sequence.
ACCESSION   DASGAC010000028 DASGAC010000000
VERSION     DASGAC010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17360
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.028"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(42..877)
                     /locus_tag="U1335_000730"
                     /pseudo
     CDS             complement(42..877)
                     /locus_tag="U1335_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030296.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyl transferase AbiEii/AbiGii toxin
                     family protein"
     gene            complement(874..1464)
                     /locus_tag="U1335_000731"
     CDS             complement(874..1464)
                     /locus_tag="U1335_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000037247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV toxin-antitoxin system AbiEi family
                     antitoxin domain-containing protein"
                     /protein_id="HEM5231235.1"
                     /translation="MSNKETVLNYLKQNNGIITYKDCKELGVPAVYLSRLENEEKIFR
                     VDKGIYLSTDGDYDEYYFFQYRFSRAIYSYVSALYLQGFTDEIPQYFEVTVPRGYRFN
                     NPPQNLAVHTVPKEIVDLGVISVKTPWGQTVKTYDFERIICDFIQNRKKIDNELFVKT
                     LKAYVNYPNKNLTNLYQYAEKMKIINQTKQTLEVLM"
     gene            complement(1843..3756)
                     /gene="ltrA"
                     /locus_tag="U1335_000732"
     CDS             complement(1843..3756)
                     /gene="ltrA"
                     /locus_tag="U1335_000732"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HEM5231236.1"
                     /translation="MTKPKNDDKLLKHQKLRYAEYYGMTEIFDDLYSKSQNGFSFKNL
                     MNIITSPENILLAYRTIKRNGGSQTEGVDGVTIKDLENLTQEDFISKVQRRFQYYRPR
                     KVRRVEIPKPNGNKRPLGIPSMWDRVAQQCILQVLEPICEAKFYKHSYGFRPLRSADN
                     AIMDCMYRMNKSHMTYVVDVDIKGFFDEVNHTKLMRQIWTLGIRDKQLLVIIRKMLKA
                     PIVLPNGKVTYPTKGTPQGGILSPLLANINLNEFDWWIGRQWEERDCKELVPQYNSKG
                     TRHKSHVYRKLRTSTTLKEVYIIRYADDFKIFCRNRNEAERTFMAVKLWLKERLSLPI
                     SEEKSQITNLKKKSNEFLGITLKLVSKNNRFVCFSHIAPKAKKRIKHQLKQQLKLIQI
                     KGVKETIIREIQKYNSMVIGIHNYYSMATHVSKDLEEIHYQLYLSFKNRLQAKGLTKK
                     GEYKGKDKGLLPYLQSQNIRYLMGYPILLISYVKTRTLKGRNKNLNRYTPEGRKLIHK
                     QQESVEIWKLKWLREHPIINKRATVEYNDNRISLFVAQKGKCAVTGQELDMDDIHCHH
                     KRPWSETKDDSYRNLVIVGRDIHRLIHATNEKVIKNLFQLLNLSSTGLTKLNQLRELV
                     GNPPLLKENLNLE"
     gene            complement(4405..5472)
                     /locus_tag="U1335_000733"
                     /pseudo
     CDS             complement(4405..5472)
                     /locus_tag="U1335_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016480259.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
     gene            complement(5491..5718)
                     /locus_tag="U1335_000734"
     CDS             complement(5491..5718)
                     /locus_tag="U1335_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006531355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231237.1"
                     /translation="MDTIRIYTRSQIQPVLEKYIYQAYENDLKAIKVTVLYPVNDQEA
                     KRIIELCRAIPAVLDAKWLLGTVIFKVYLKH"
     gene            complement(5705..7619)
                     /locus_tag="U1335_000735"
                     /pseudo
     CDS             complement(5705..7619)
                     /locus_tag="U1335_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003103538.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
     gene            complement(7634..10138)
                     /locus_tag="U1335_000736"
                     /pseudo
     CDS             complement(7634..10138)
                     /locus_tag="U1335_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017646450.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            complement(10151..10570)
                     /locus_tag="U1335_000737"
     CDS             complement(10151..10570)
                     /locus_tag="U1335_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001001540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HEM5231238.1"
                     /translation="MNNEKEPLYDYARGLNAPYWIQEIKTQKGARIWYFATPMQLSFF
                     VVFILVFVVMLLGLSFLVPLAKITHSISLLLYAYVPYKLAKFYTEYEPHGKKMHIFLV
                     DYFRYLYEFRWNKKAIYHDERVEPYDDEDIVFEQTHL"
     gene            complement(10572..10796)
                     /locus_tag="U1335_000738"
                     /pseudo
     CDS             complement(10572..10796)
                     /locus_tag="U1335_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003005585.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(10802..11783)
                     /locus_tag="U1335_000739"
                     /pseudo
     CDS             complement(10802..11783)
                     /locus_tag="U1335_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017649866.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
     gene            complement(11796..12347)
                     /locus_tag="U1335_000740"
     CDS             complement(11796..12347)
                     /locus_tag="U1335_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003104355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HEM5231239.1"
                     /translation="MLVKKIYEGITCFPDTNEFWNLYIVLMKEKDFFFDAFARETVDL
                     DSPAKYQHAYFTTDGQVLDFNRNMDSKLVTLFRQVILDQQEQFMEEIIMAKQSLIEKK
                     IKVASFELSELMKAHKDKEAWTKAGELNHLLKNEEAEMLPADLLEKIRLELRGYYYVN
                     GEINKLHKQLYAKGNKLIELASA"
     gene            complement(12368..12598)
                     /locus_tag="U1335_000741"
     CDS             complement(12368..12598)
                     /locus_tag="U1335_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002270998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231240.1"
                     /translation="MEYKVELSSIDNFKAWSGARETLDTVRERGGIDQLTSLCEDVFS
                     GSTPTEGQINDWLWFDDDYIYQALGYHDLIEE"
     gene            complement(12582..13841)
                     /locus_tag="U1335_000742"
     CDS             complement(12582..13841)
                     /locus_tag="U1335_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003104105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEM5231241.1"
                     /translation="MDKLSPLNLKKFRKQTGMTQKQFAESVGISTRTYRSYEDGSRGL
                     SLEKFGQFKAELGFHQENADDLIDVHIDYLRMTFMSIRDLSHFCQNCLHCSFTEFKEF
                     ETRLLNYTRLWKRGNIWLFDFFDKIETGNYQVILQLSGQGCREMELILESVDMSWQEF
                     LQALLFDLTDSRVTRLDIAMDERYLGHEKEDEQFLLSDMVAKVYKDEVSFKSIRTWSH
                     IGGGNLRNMDEVEGSQGISLYFGSRQSNLYFNFYEKRYELAKSEQISVEESLEIFGIW
                     NRYELRFAQEKAQLAIEEYISGVDLAEIARGVINHEMQVYDGTNKFGAFVPDQKWQRM
                     FGGTEPLKLRMKPEPYSIDRTIKWLMYQVANSLKLVEEADKIMETDFIKMIQENGEIT
                     DRAESILQDLQASYNLKKKEENHGIQS"
     gene            complement(14053..15741)
                     /locus_tag="U1335_000743"
     CDS             complement(14053..15741)
                     /locus_tag="U1335_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006149315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HEM5231242.1"
                     /translation="MHLFTYRGLRVHKFYRHIRVITILLMLSPFLIGNAFYFYLIYDL
                     IIADPLFYLPKILLTTLPPIVIIPIVNLILYQKVLIFQRLNSLRIMTNFLLENRYYLS
                     KTVKHDGKTVEKIALPKVYVKRGKYQLLASFILEGNKFQDRFINLGATLEVMFNGDFR
                     NKTFDNRFVTYEIVINRIASHINVSEVTMTDKGLRLMKDVFWDYIAEPHLLIGGGTGG
                     GKTVVLMSIVWALAKIDFVDLCDPKNADLAGLKTIPVFKGRVFTSKEDIIACLKDNVT
                     FMEDRYEAIQNRPDYKIGKNFSDYGLKPKFIVIDEWAAFIAKIENDYRLQAEATEYLS
                     QIVLEGRQSGVFVIFAMQRPDGEYIKTALRDNFMKRLSVGHLEDTGYTMMFGDANRNK
                     EFKKLDKINGKKVHGRGYIANNGELAGEFFSPYVPFDKGFSFEEEFRKLPVLDEDEAV
                     LPQDRPAPADPGEKASPKEKTIAEILEENRLLTDFAKEHDLTVKTLRKIIYLLDERGV
                     PFDKVDNALVVTPFQEQLLLETLGLFEAEGRKSYPKAVDSCLANHGLGQEQGQA"
     gene            complement(15757..16212)
                     /locus_tag="U1335_000744"
     CDS             complement(15757..16212)
                     /locus_tag="U1335_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001062570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HEM5231243.1"
                     /translation="MAKTGLNFGEKLQIVDKSYRVITDALKLDEVFGKLTFRSIEGAE
                     LIYEADRNQRNEDGSYVQVPTGEIRGITVGIHSANQHETLFFTFVDMSEQQLNDLGLN
                     YREEVELTDIVVTYSAIGRNDNYSLYASAIKKKRAQAAPKSEPKAEDKK"
     gene            complement(16231..16527)
                     /locus_tag="U1335_000745"
     CDS             complement(16231..16527)
                     /locus_tag="U1335_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoplasmic protein"
                     /protein_id="HEM5231244.1"
                     /translation="MIPETLAMKPEFIGAAYYEKLGHAPHTVFGKEGKYQRHVLNNQE
                     HGSFHVITPATNTVFDEDTLVKVVTPIFFPDRAVNGSNVAPALNVFAEKLEIVK"
     gene            complement(16564..16812)
                     /locus_tag="U1335_000746"
     CDS             complement(16564..16812)
                     /locus_tag="U1335_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003105203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231245.1"
                     /translation="MTSYFEQCLERHYQNYLFTHKMYAHSLDLQASLFGSAKEEIDTL
                     VKKFKATGYPLAELTYYSQIYKNKINRFYFAQVSLVIC"
     gene            complement(17183..>17360)
                     /locus_tag="U1335_000747"
     CDS             complement(17183..>17360)
                     /locus_tag="U1335_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012677188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5231246.1"
                     /translation="TNAMELPYSNAKLEATNKLIKDIKRQAFGFRNFTNFKTKIYIAL
                     NIKNERTNFVLSRC"
BASE COUNT         4665 a         3486 c         3754 g         5455 t
ORIGIN      
        1 atcaatagta actaatttat atttgattgc catgattctt cttagagatt tttgatagtt
       61 acaagcaaat cagtcatttc tgtcagaaca tcgttaaatg taataccttt agtgtaacta
      121 tactttttag agtagttttc ccactgatgg ttttgggttg aatccgtttt gaatgtttct
      181 agcagattga tgaatttatc gaagtctaat tcagtacctc gataatcgaa ggtacgctga
      241 caagcagtga gaagttgctg cgaatcaatt tctgatttct tcaattttga caagatatag
      301 acgtcataga agtctttgct tcgactattc aagaagctga gagaataaat agtttgtagt
      361 ttctctgcta agatagtctc aatcgtgtag gcaatgatag gaaactgttc tgatgtgaag
      421 attggcttgt agtcgtaagt gatgggctgc ggagtgacaa tgtccccagt cgcaatatct
      481 aggtggatga cctgtctgat attctcaagc tggcaaagga tacttgcacg ataacctccg
      541 taatcatcac tttccttaat tgcagtgacc gactgaatag tgaaagaaat atcttcatca
      601 gattttccaa ggatatcctc caattgctga tgcacggtct cttctgatag attcatttta
      661 ctaaagagaa agtcaatgtc aacggtacta cgggaagcaa ccccgacgac atttgtgagc
      721 agaaaacctc ctttgaaaat gtaattttga gcataagcgc tttggctcaa tttttcagaa
      781 taatttccag gaagtagtag gtcatcacag aattaaacgt taatcctgtt tcttttgaaa
      841 ctttatggca gagtgccgtt aattttgctt tgttcacatt agcacctcaa gtgtttgttt
      901 tgtttgattg ataattttca ttttttcagc gtattggtaa aggtttgtca ggtttttatt
      961 tggatagttg acataagcct taagagtttt gacgaaaagt tcattatcaa tttttttacg
     1021 attttgaata aagtcacaga tgatacgctc aaagtcgtag gtcttaacgg tctgtcccca
     1081 gggtgtcttt acagagataa caccaaggtc aacaatttcc tttgggacgg tatgaaccgc
     1141 aaggttttga ggcggattat tgaaacgata ccctcttggt acggtgactt caaaatattg
     1201 agggatttca tccgtgaacc cttgaagata aagagcggaa acataggagt aaatagctct
     1261 tgaaaatctg tattggaaga agtagtactc gtcatagtca ccatcagtag aaagatagat
     1321 gcccttgtcc actcggaata ttttctcttc attttcaagt cgtgagagat agacagctgg
     1381 aaccccaagc tctttacagt ctttatatgt aatgataccg ttattctgtt tgagataatt
     1441 cagaacggtt tctttattag acatacgaac tctcctcttt tgttatgttt atactacaat
     1501 tttaactctt ttgtcgtatg gacgcaacac ttaacaatcg taaaaactat aaagaatcgt
     1561 aaaaattcgt aaatcttatt gtgcaatcgc aaaactgtaa tagctttggt tgctgagaac
     1621 ggcatagtgt ggtttgtttt gaacgccacc gacattacat tctgagatga ggaaggttcc
     1681 atcttgattg acagcttata gcgataggta aaactttgat actatctcca tcttttcccc
     1741 cgctccacac cgtgcgtgcg actttcaccg catacggcgt tccatcaata gtgtattatc
     1801 acgatttcgc tttatcgttc tatattaata tgattaacat ggttattcta agttcaaatt
     1861 ttctttcaat aatggtggat ttcctacaag ttcacgcaac tgatttaatt tggtcagtcc
     1921 tgtactactc aaattcaaaa gctgaaagag atttttgata accttctcat ttgttgcgtg
     1981 aatcaggcga tgaatatctc gtccaacaat gaccaggttc ctataagagt catcctttgt
     2041 ttctgaccaa ggtctcttat ggtgacaatg aatatcatcc atatccaatt cctgaccggt
     2101 tacagcacat ttcccttttt gagctacaaa taaagaaatt cgattatcat tgtattcaac
     2161 tgttgcacgc ttatttataa ttgggtgttc tctcagccat tttaatttcc atatttcaac
     2221 agattcctgt tgtttatgaa tcaattttct cccctcagga gtatacctat tcagattctt
     2281 atttcttcct tttaacgtcc tcgtcttgac atagctaatt agaagaattg gataacccat
     2341 taagtaccga atattttgag attggaggta ggggagaagt cctttatctt ttcccttgta
     2401 ttctcctttt tttgtcagac ctttcgcctg caatcgattt ttaaaagaga gataaagctg
     2461 ataatgaatt tcttctaaat ccttactcac atgtgttgcc atactatagt agttatgaat
     2521 accgataacc atactattat acttctgtat ttcacgaata attgtttctt taacaccttt
     2581 aatttgtatc aatttcagct gttgttttag ttgatgctta atacgtttct tggctttcgg
     2641 tgcaatatga gaaaaacaga caaaacgatt attcttagaa actagcttta gagtaatccc
     2701 aaggaattca ttgcttttct ttttcagatt ggtaatttga gatttttcct ctgaaatagg
     2761 aaggctaagt cgctctttta gccacaattt tacagccata aaagttcgtt ctgcttcgtt
     2821 tctatttcga caaaagattt taaaatcatc cgcatatcga ataatgtaaa cttcttttag
     2881 tgtcgttgaa gttcgcaact ttctgtacac atgtgacttg tgtcttgttc ccttggaatt
     2941 atattgagga actaattcct tacaatctct ttcttcccat tgtcgtccta tccaccaatc
     3001 aaattcatta aggttaatgt tggcaagtag tggagataag atacctcctt gtggtgtgcc
     3061 cttagttgga taggtcactt ttccattcgg aagaacaata ggtgctttta acatttttcg
     3121 aataatcact agaagctgtt tgtccctaat gcctaatgtc cagatttgac gcattaactt
     3181 agtatgattc acttcatcaa agaaaccttt gatatcaacg tcaacaacat aggtcatatg
     3241 acttttattc atacgataca tacagtccat aatagcgtta tcagccgacc ttaagggtct
     3301 aaatccataa ctgtgtttgt aaaatttcgc ttcacagatt ggctccaaca cttgtaaaat
     3361 acactgttgg gctactctgt cccacatcga gggaatgcca agtggtcgtt tattcccatt
     3421 tggcttagga atctctactc ttctgacttt tctgggtcta taatattgaa atcttctttg
     3481 aactttagag ataaagtctt cttgggtcag attttctaaa tctttaatgg taacaccatc
     3541 tactccttcg gtttgactac caccattccg cttaatggta cgataagcga gcagtatatt
     3601 ctcgggagat gtgataatgt tcattaagtt cttaaaactg aatccatttt gacttttgga
     3661 atataaatca tcaaatatct cggtcatgcc atagtattcc gcatacctta gtttttgatg
     3721 ttttaatagt ttgtcatcat tttttggttt cgtcatggtc tatcactcct ctctttggat
     3781 tcgtgacctt ttatgtctta caagaatcca tgaaatgata aagttcataa caatacacta
     3841 ttgactagtg gctgttcctc cagtatcatt acaacacttt caaaggtcgt gccaccactc
     3901 tcactagaga ttaaggaaag ttatgatttc ctttccaatg tttctctggt tgtgcaacct
     3961 ccacatctct agctttcgac gttcccttat ctttatcaat actaaactta ggtgcctagc
     4021 tatacccctt caactttgat atgcctgtaa cataacaagg aatttcatat cgtcgattct
     4081 tactcttcct caagttgaaa caacttacgt tgttatacgc atttctacgt actcgccttt
     4141 ggagcgtaca ttcgctggtt cgtcagtgct catgcacatt ctcaccctat ttagttttta
     4201 atgactcccg acctatcaga tacatattcc acctctggaa cactttcgat tcttaagtcc
     4261 ttaagaatga cggtatcttt cagccgactt caccgagctt cataccttta cctttgcacc
     4321 agataaacgc atgtcggagt attagagaaa tcgtttcagg gcgttacccc ttcattccaa
     4381 ttttcaagat aagagttctc cattctattc aaatttaacc tgattatcag gttgattttt
     4441 caagaacgtg tctaaccttt tcagttagaa acgtctcgca ccgacgaaag ccacatgtcc
     4501 gtattctgca taggtgcctc cataaccacc ttgaacggac ataacggcgc caacttgagg
     4561 ctctgatact tgtttccaac tacgagagac aagactagca gcccaatctt gaccgttccc
     4621 gttgtaattg tagatagctg agttggtaca gatgcctgtc tcaatcagtc gattacaaac
     4681 ataccaggta cattgaccag ctggataggt attgtttcct tgagtagtaa cagagttctc
     4741 actaggaact ccgtacttga gttttccaag gtattctggt ggtaagtcaa aggtagacgt
     4801 gagagtgcca gtagcaagac ctgtatcgcc tgagaaagcg acagaggagt ctgaggtaat
     4861 tgttccatca aataccttaa accacttgtc agcgtccgtt tggagcttct cagcctttgt
     4921 ctgaccgtct aagagggcaa caccttcata atgttctgac caatacaaag tagcatcccc
     4981 tggggcagtt gctttttgca tttctgtttt gacttttttg taggcaccat ttaactcggt
     5041 tgacatgagt tggagctcaa catcagcatc cagcgttcga ctagaagcct gtgcccaacg
     5101 gtcaccgttg acggtgttag accagcctga ccactggaag taaccagcta cgccaccgcc
     5161 agtgttgata gcttttgggt caaagcctga ctcacgttct gcaacggcta aactaccagt
     5221 agagccagcc agagtaaatc cttcttttga tagctggtaa ttaaggattt tgatgacatc
     5281 ctctgcccgt tcttctgtga ttgacgcttt ttgtgctacc tctttagctg ttagtgtcgt
     5341 ccgcttccca gttgaacctc cattacttga tgtgttagac gagtcaccag caatcgcagc
     5401 tgcacaaatg atgacaagta ataggggcaa cagaagcgaa gagagaagac tcagtttgaa
     5461 tagttttttc atgtgtccct atcacctcct ttagtgtttg agatagactt tgaagataac
     5521 tgttccaagg agccatttgg catctaggac ggctggaata gcacggcaga gttcgataat
     5581 ccgtttggct tcttggtcat taacgggata aaggacagtt accttgatag cctttaggtc
     5641 attttcatag gcttggtaaa tgtacttttc aaggacaggt tgaatctgac ttctcgtata
     5701 tatcctaata gtgtccattt tgttcacctc gcaatctgtt gagttcttga gtgagacggt
     5761 tctttcgctc gatattggct ttgattttgt cgtccctggt ccatcgattg acggaagctt
     5821 cgggtaaagg catttgagcc ttgcgcttga tacatggctc ctgcatcatc ataggcgcta
     5881 agttctcttt ccaagcgttc cattttccgt tgtttacgtg gagataccca ttgttccttg
     5941 agctcctgga attccatctc aggtgatgga ggagttgttg gttgactagg gatagcttcg
     6001 ggagttggtg ttttctcttg ggtaggatta tctgttggaa tatcctgttt tggaagattt
     6061 ggttcagatg atgttggtgg caattggtca ggtgtcggag caggttgttc agtcgggtgt
     6121 tccgttggaa cgtttggttc ctcagttggc tcagggcttg gttttgactg tctaaagaag
     6181 ttgccaactt ccttgaggtg agaagaagcg ttcatagcac ttccagccac aaagccagta
     6241 ccagctatgg caaagttacc caggtgttgc gcagcttcaa agctacgtga cggcatctgt
     6301 tggatgaggt ctttgccctg gctaacttta ttttcaactt ggtttccaat gtcttccatc
     6361 ttgatgcgtg cccgtgagcc catgatgaat tcaatgagtt cgcctttata aatccaaagg
     6421 aaataataga cggcagcttt ggcaacgact gaaagaatga gcttgaagag aagggcgaat
     6481 gttcctaaag atgggaacga ttcgatgacc ccatcaaaac cagaggtaat cagcgtctca
     6541 atgacttttt cgatgtagaa gataatgagt gtgatgagtg tcgtaatcgt agggaaaacg
     6601 agaccaccaa acatgacctt gaaaatccca aagatgatat cttgcatggc agggacaaag
     6661 gaaatgagaa gagcgatagg gaacaggaga atcatgacca ggactaagag ttgagcaatc
     6721 agattcagaa gttgtatcag gataattgga accgcaataa cgatggcttc aataattttg
     6781 aagatgacgt agaatgtctt aatgaaaagg tagtcccaga cggctgatac ccagcggttc
     6841 ttttccttcc cgtcatcagc cttgtcacca agtttatcca gatagtcttt tctatctttg
     6901 tttttgaccg ctacaaattt tcctgagtca tcaacgcttc ccaagacttt agaatcctcg
     6961 aaggcttcct cttcacctgt ttggctattg acgtactttc cgttttcttg acccgtgttg
     7021 acaaagacat aggcagtgta ggaagtttgt gcgatatagc tatcagccat ggattttcct
     7081 accttgattg acttattctc gccataagaa acggagatat tggaaatctt agaggtgaca
     7141 atgtccgcaa ggttatcaac cgtatcaagg atgtagagcc caccagaggt agaagcgacg
     7201 gttccaaagt aaccaaatcc aagcagtacg acgagcagca catgaaggac ttttcgtatg
     7261 aagtttccac gagaaaagaa atactggtag aagaggtaaa aggctccaat ggtcagaagc
     7321 atggaaacta gggaaccact tgataatccg ccagaagttg aacctgttag tccctgccag
     7381 atggatttag cagcgttata gacgtaggtt ttataagagt cgtagaggtc aatattctcc
     7441 atgatacgta tcatgaggga gaagaaaccc accaccagat tgaggagaaa gaaaaagaga
     7501 ttgacgaaaa tctcattcat tgccacgata atggaggtct caatttttga cgtcttttcc
     7561 agatacgatt ttaaggcgaa gatgtccacg ccttttagct tctcaaaggc ttcttgcatg
     7621 tgagccctcc tttctaacta gcatatttat tttcgaggct agatgatgcc gttgctttca
     7681 ttggtttcaa aagcatatcg atgtcttcaa agatgttgtg aatggaaatc atgttcagat
     7741 tgccatagac gtcatagtag aggcattgcc ctgaaatcat gttgtcaatc cattccaggt
     7801 tgctttctgt tggttccaga ttgacgtgct tgagaatatc ttctcgttct gatttttcgt
     7861 agaaggcaaa gatggttcca aagccagtgg tgtcatcatc gttttcagca tcatggacag
     7921 attgtgtgat aagtgccaga gtgttatttt tcgagcgacc gatacggcgc atattcttga
     7981 taacggcttg accttcggca gacttcataa gaatccaggc ttcgtcaaag aactcaatag
     8041 tgtcttcact ttcatcacgt tccccaaagt gggtacagaa agcaccaagg gcaaacataa
     8101 gagcgataga gtttcgttcg tggtctgaaa tcttcgttgc gtctgtctta ggcaatttca
     8161 ggttcgcaac ttcaagtaca gtgacttgtg actcataatt gagcccttgc gttgttccat
     8221 cagagaaggc aagttccaag atggaattgg tcacaataga agtgaggtag cgaccaactg
     8281 aggcgatttg gtcattgtca ctgtctttga gggcttccag aacgtgctta aagccaacgg
     8341 tttgacctgc ttgtctctta tcgacaatgt cgttgatggt ttcggtaatg gctgtcttct
     8401 gatccatggt gacgttgtca accgcttgga gcaagaattc cagcatattc ttagcgacct
     8461 caacggcttg ttctttatct agtacgacaa tagggtcaag cactccatgg ttggaggtga
     8521 gcgagctatc gagagtgaca aagttaaagg cttcaatttg tttcttgcgt tcaggataga
     8581 gacgggcgaa ctcaggacta ctgatgattt cttggtagtg atggcggagt tcccgtttgg
     8641 ggtcaatgta gagcgtcttc acgttttgaa gggcaactga cagaaagata atctgagcga
     8701 ggaatgactt cccttgacct gtagcgcctg taatgatgat gtgcgggttc ttggtaattt
     8761 tgcctgcaat gtcttcttta ttaccgacag tcgcattaaa gaggacaatg tttttagaag
     8821 cgttgatggc tttttcgata ttatcccagc gaccagtcta gttatcgact cgtccgatat
     8881 accaaccaat acggttacca gcggaggtgt tggtaaaagg catgagctcc gcaaaaacac
     8941 gactagtgac catgtgtgtc caggttcgag ttttcttctg caagtcttga ccgtagagca
     9001 aagcttggaa gagataggga gtgtcatggc tagcctcgct gatttcaacg cccatgtcat
     9061 caaagtagtt gaggacgact tgacggcgac ttctcagttg actaagtgac gaaccagaaa
     9121 caataagata agcaccgtat tcaatgattt cttctttatt ccctactttc ttcatcaggt
     9181 ctttcagaga gaaagaactc atgataatct cgtcttgttg gacggtatcg gtattctcgg
     9241 cttcttccat gatgttcttg tagcgagtgt tggagcgtcc cattttccct ttaattttat
     9301 tacggtcaat gaattcagcc ttgaagcgca gttccactgg gaagttgaga cgttgaacaa
     9361 attctcctag atggaagccg ttgaagatgg tgttgaattt cccaacagga agaatggtta
     9421 caaaagaatt tccataggga ctttcgagtt tgagaaagcc tccgttcatg cttttaatca
     9481 gtgtgtctgt gacattgaaa agggaacggt tagcaatgac ttctttcttg agatggggaa
     9541 tgtagcggag gtattgcatc cgctggtaat agaagagttc atcatctgtc agacgacgac
     9601 aacgaagcat tgaaagcact tggtagatga cttgctcatc agcgaggtag tcttcaaacc
     9661 aaggcttttc ttcttccagt tcaaagccta gcccgttagc gagggtctct gaaatctcag
     9721 agagtcgttc ataggcgacg ttagcaagac tagctccctt gtcatgcttt ctaagacgga
     9781 cacctacaag ccagtcgaac tgataaggaa tttccatttc atctgtcagt ttgtcgacag
     9841 tgtaaagtag caggtcttca cccagtgttt gattgtttgg tgagagagca tccataaagt
     9901 cacgcatctt ttcttctagg agataatcct ttggaataag tgagatgtca aagtgctggt
     9961 ttttagctag tttgttgagc atctgactga ccgtgatttt gtgcttccct tttttctcat
    10021 catccgtgat ggtgataggc gtattaggaa tacggtagta agccataact tgcttgtctt
    10081 tgcgaaaggc taagttttcg tgtgtggctt taatagggta ttgtagtttt agtgctatag
    10141 tgcctccttt ctaaaggtgt gtctgttcaa agacaatatc ttcatcgtca taaggttcca
    10201 ctcgctcatc atggtagatg gctttcttgt tccaacgaaa ttcatagagg taacggaagt
    10261 aatcaaccag aaagatatgc attttcttgc cgtgcggttc atattctgtg tagaatttag
    10321 cgagcttgta gggaacgtaa gcatagagca gcaaggagat agagtgggtg attttggcta
    10381 gtgggacaag gaaagaaagt cccaggagca tgacgacaaa gacgagaatg aaaacaacaa
    10441 aaaaggacag ctgcatcggt gttgcgaagt accagatacg tgcccctttt tgtgtcttga
    10501 tttcctgaat ccagtaagga gcatttagcc ccctagcata gtcatagagt ggttctttct
    10561 cgttgttcat atcagagccc cgtttcaata ccgatgaggc gtaggaacca accaatgaca
    10621 gagagaatct gttgtccttt ggtcatggac acgataatcc cccaaaatcc gataacggaa
    10681 aagagttgga gccaggagct atttttccaa gctttgatgg ctaaaaggat tgccacagca
    10741 gtgataatcc aagcgccatc cccttggagg aattgttata gtgagcttgt gttcatagat
    10801 gttattctcc ttcgtgtttt gcataatctt ttggaatagt atgagccact tttgtgacgt
    10861 agtatgaatt tcctttaggc gtaagggtca aagtgaaatt ctctgagcga gtgttgccag
    10921 cgacttcaaa ggtgacttga acataggagg taatggcaat caccgtcttc tgtcagatag
    10981 acatagtcta gtgacttgaa agtcgtgttt tcaagcacaa ctaaatcttt accgaccaag
    11041 tccagattgt cttggtctgt ggtgtagttg gtaaagaaga cgttgagaaa cttcttgact
    11101 ttcttgtgtg tcttttctgg gagattgtca gaagcggtta gactgagcgc tgattctttg
    11161 tcaaagcctt tggcttggtt gtcactgaga ctagaatacc aaggaaatcc agaaacgtag
    11221 taggagctgt ttttagtagc gtaagggata ttgaaccctg tggtaatttc ttcctcctta
    11281 tcaccgactt tttgcttata ggtcacttga taagtggcgg tgttctccgt cagcaataac
    11341 aacctagctg agactagaga catcggtgtt cgcttctgac cttgtgactt aatctcaggt
    11401 tcaacgtcat aaaagctatt gagcttttca atttgggctt cttgttcttc ggctttatca
    11461 gagaaagaga agtaggctgc gacaaagtca ttgaggtaat aagttaagcg gtagttggtg
    11521 tcagttgccg tagtcaccac ttgggaggat tgagcttttt tgacttccgt ttcaagagag
    11581 gagaccttgc ttgatagcgt gatagcacac agggaaccag tagctccgat gaaagctaaa
    11641 aatcctaatc cagtaaggac taagatattc acgtttttcc gtgttgtctt gatgagtttt
    11701 ggtgagccac gcttcttatc ttgtttcttg aaacgagaca agtaatgggt gacttgttgg
    11761 atgactgttt tcagtttgtt cataatccct ccttatcagg cactagccag ttcaatcaat
    11821 ttattgcctt tggcatagag ctgtttgtgg agtttattga tttctccgtt gacgtagtag
    11881 tagccacgaa gttccaggcg gattttttcg agaaggtcag caggtagcat ttcggcttct
    11941 tcatttttaa gcaggtgatt gagttcacca gcttttgtcc aggcttcctt gtctttatgg
    12001 gctttcatga gttcacttag ttcaaaggaa gcaactttga ttttcttttc aatgagtgat
    12061 tgttttgcca tgattatttc ctccatgaat tgttcttgtt ggtctaagat gacttgtcga
    12121 aagagagtga ccagtttgga gtccatgttt cggttaaagt ctaggacttg accatcagtt
    12181 gtaaagtaag cgtgttggta tttggcggga gagtctaggt caacggtttc acgagcaaag
    12241 gcatcaaaga agaaatcttt ttctttcatg agtacgatat agagattcca gaactcattg
    12301 gtatcaggaa agcaagtgat gccttcgtag atttttttga caagcatgac tcagagatac
    12361 ctccttatca ttcttcgatt aggtcatgat agccgagagc ttgataaata tagtcatcat
    12421 caaaccatag ccaatcattg atttgtccct ctgttggtgt acttcctgag aagacatctt
    12481 cacagaggct agtgagttgg tcaatcccgc cacgttcacg gacggtgtct agggtttctc
    12541 tagcacctga ccaagccttg aaattgtcga tgctagaaag ttcaactttg tattccatga
    12601 ttttcctcct ttttctttag attataggat gcttgcaaat cttgaagaat gctttcagct
    12661 ctatcagtaa tttcaccgtt ttcctgaatc atcttgataa agtcagtctc catgattttg
    12721 tcagcttcct ctaccagttt gagcgagtta gcgacttggt acatgagcca tttgattgtt
    12781 ctgtcgatag agtatggttc aggtttcatc ctgagtttca agggctctgt accaccaaac
    12841 atccgctgcc atttctggtc aggaacaaaa gcaccaaatt tattggtgcc atcgtaaacc
    12901 tgcatttcat gattgatgac gccacgggct atttctgcca ggtcaacacc gctaatatat
    12961 tcttcaatgg caagttgggc tttttcctga gcgaagcgca attcataacg gttccagata
    13021 ccaaaaatct ccagggattc ttctacggag atttgttcac ttttggcgag ttcataccgc
    13081 ttctcataga agttgaagta gagattactt tggcgacttc caaaataaag ggagatgcct
    13141 tggctgcctt ctacctcatc catgtttctg aggttgccac cgccaatgtg actccacgtt
    13201 cggatgctct taaagctaac ctcgtcctta tagactttcg caaccatgtc agagaggaga
    13261 aattgctcat cttctttttc gtgaccgaga tagcgttcat ccatggcaat gtctaaccta
    13321 gttacccgac tatcagttag gtcaaagagc agagcttgaa gaaattcttg ccagctcatg
    13381 tcaacacttt ccagaatcag ttccatttca cggcaacctt gaccagagag ttgcaagatc
    13441 acttggtaat ttcctgtttc gattttgtca aaaaaatcaa ataaccagat gttgcctcgc
    13501 ttccagagcc ttgtgtaatt cagaagtctg gtttcaaatt ctttgaactc tgtgaaggag
    13561 cagtgaagac agttctgaca gaagtgagat aggtcacgga tagacatgaa ggtcatgcgg
    13621 aggtagtcga tatgaacatc aatcaggtca tcggcattct cttgatgaaa gccaagctcc
    13681 gctttgaact gaccgaattt ttctaggctt aaacctcgtg aaccatcttc atagctgcgg
    13741 taggtacgag ttgaaatccc aacagactcc gcaaattgtt tttgcgtcat gcctgtttgt
    13801 tttcggaatt tcttgagatt gagtgggctt agtttatcca ttcataaggt agaactcctt
    13861 tctagtgagt gacacagttt tttagcgaaa gtgacacact aagtaaatct ttgaaaaact
    13921 tggtactatt ggtgtgttgg gggtcggacg ttgtcatttt gacaaatgtt accccctatt
    13981 agaatttggg ggtaggcaca ctaatcatgg gcacttggga acggcgaact acggtctgcg
    14041 cctgacctgt ggtcaggctt gcccttgctc ttgtcccagc ccatgattgg ctagacagct
    14101 gtccactgcc ttggggtaag acttccgtcc ctctgcttca aagagtccca aggtctcaag
    14161 aagtaattgc tcttgaaagg gtgtcacaac aagcgcatta tccaccttgt caaaaggaac
    14221 gcctcgctca tctagcaggt agatgatttt acgaagggtc ttgacggtca agtcatgttc
    14281 cttggcaaag tctgttaaga gacggttttc ttctaaaatt tctgcgatgg ttttttcttt
    14341 tgggcttgcc ttttcgccag gatcagcagg agctggtctg tcttgaggca agactgcttc
    14401 atcctcatct aacacaggaa gtttgcgaaa ctcttcttca aaagaaaagc ctttgtcaaa
    14461 gggaacgtag ggagagaaga actccccagc cagttccccg ttattggcga tatatcctcg
    14521 tccatgaact ttcttcccgt tgattttatc caactttttg aactctttat tacggttggc
    14581 atcgccaaac atcatggtgt acccagtgtc ttctaagtgt ccgacagaaa ggcgtttcat
    14641 gaagttatcc cgaagagcgg ttttgatata ctccccgtca ggacgttgca tggcaaagat
    14701 gacaaagacc ccagattgac gcccttctag gacaatctga ctaaggtatt cggtggcttc
    14761 tgcctgcaag cggtagtcat tttcaatctt ggcaataaag gctgcccatt cgtcaatgac
    14821 aatgaatttg ggtttgagtc catagtctga gaagttcttc ccaattttat agtcaggacg
    14881 gttctgaata gcttcatagc ggtcttccat aaaagtcacg ttgtctttca aacaagcgat
    14941 aatatcttct tttgaggtaa agacccgtcc tttaaagaca ggaatagtct ttaaacctgc
    15001 caagtcagca tttttagggt cacaaaggtc aacaaagtca attttagcca gtgcccaaac
    15061 aatgctcatg agaacaacgg ttttcccacc acccgttccg ccaccaatca gtagatgagg
    15121 ttctgcgata taatcccaga aaacatcttt catgagtcgc aagcctttat ccgtcatggt
    15181 cacttctgaa acgttgatat gagaggcaat ccgattgatg acaatctcgt aggtcacaaa
    15241 acgattgtca aaggttttat tacgaaagtc accgttaaac ataacttcta gcgttgcccc
    15301 aagattgata aatcggtctt gaaatttatt tccttctagg ataaaggaag caagtagctg
    15361 atacttacca cgtttgacat aaactttggg aagagcaatc ttttcaaccg ttttaccatc
    15421 atgtttgact gtctttgaaa gatagtaccg attttctagg agaaagttag tcataatcct
    15481 cagcgagtta agacgctgaa agatgagaac tttctggtag agaataagat tgacaatcgg
    15541 aattatcaca ataggtggca gggtagtcag taggatttta ggcaggtaaa ataaagggtc
    15601 agcgataatc aggtcataga tgagatagaa gtaaaaggcg ttaccaatca aaaagggcga
    15661 taacataaga agaattgtta tcaccctgat atgacggtag aatttatgga cacgaagtcc
    15721 ccgataggta aagaggtgca tgattacctc ctagcatcat tttttatctt ctgcttttgg
    15781 ttcagatttt ggagctgctt gagccctttt tttcttgatg gcagaagcat agagactgta
    15841 gttgtcattt cgaccgatag cagagtaggt cacgacaata tcagtgagtt ccacttcttc
    15901 acggtaattg agcccaaggt cgttgagttg ttgttcagac atatctacga aagtgaagaa
    15961 gagtgtttcg tgttgattag ctgagtgaat cccaacggtg ataccacgaa tttcaccagt
    16021 cggaacttgg acgtaggagc cgtcttcatt acgctgatta cggtctgctt catagatgag
    16081 ttcagctcct tcaatagagc ggaaggtcag tttaccaaag acttcatcca gtttgagagc
    16141 gtcagtaata acacggtagc ttttatcaac aatttggagt ttttctccga agttcaatcc
    16201 agttttagcc ataatatttt gtttcctttc ttatttgacg atttcgagtt tttccgcaaa
    16261 gacattaagc gctggggcta cgtttgagcc attgaccgca cggtctggga agaaaatagg
    16321 ggtgacgact ttgacaagcg tgtcttcatc aaagacggta ttagttgcag gagtaatgac
    16381 atggaaagag ccatgttctt gattgttcag gacatgacgt tggtatttgc cttctttacc
    16441 aaagacggta tgtggggcat gaccaagttt ttcataataa gcagctccaa taaattctgg
    16501 tttcatagca agtgtttcag gaatcataag tattctccgt ttctatattt gagtaataaa
    16561 aaatcagcat ataacaaggc tgacttgagc aaagtaaaag cgattgattt tgtttttgta
    16621 gatttgacta taataagtca attcagcaag tggatagcca gttgccttga atttcttgac
    16681 gagcgtatca atttcttctt tggcagagcc aaagagactt gcctgtaagt ctaggctgtg
    16741 agcgtacatc ttatgagtaa agagataatt ttgatagtga cgctctaagc attgttcaaa
    16801 atatgaggtc ataaatgcct cctttcttta ttgtaaaaac aaaagctact agaaacatcc
    16861 agtagcttga gcatagacta ctcctgtaaa ataaggagaa gtagtcagtt tgaaaaagag
    16921 ttatttggtt gaaagaccta tctaggaact agacaaacct ttcacggtgg caacgtttag
    16981 caaggtgctt tgcgtcatta ccatcgcttt cccagccaat catccaggta gtcgttatca
    17041 tgcctgtcac gattctctta cgccctttgg cgaagccagt tcactttact attcggaaaa
    17101 gtgctaaagt ccgaaatgcg tgtgagccca caattcctta gaattgtggg ctcattgtca
    17161 actgtagtgg gtagacgaaa agctaacacc tagagaggac gaaattcgtt ctctcatttt
    17221 tgatgttcaa agcaatatat atcttggttt taaagttcgt aaagttccta aagccgaacg
    17281 cttgcctctt gatgtctttg atgagtttat tggtcgcttc cagcttagcg ttggaatatg
    17341 gaagctccat ggcgttcgtg
//
LOCUS       DASGAC010000029        17191 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.029, whole genome shotgun sequence.
ACCESSION   DASGAC010000029 DASGAC010000000
VERSION     DASGAC010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17191
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.029"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(71..799)
                     /locus_tag="U1335_000748"
     CDS             complement(71..799)
                     /locus_tag="U1335_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004185339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEM5231247.1"
                     /translation="MRLDKFLVDCGVGSRTEVKKLLKNKQVTVNGQVETSPKQQIDEK
                     SDQIALAGQVLSHETFVYYLLNKPKGVISATEDDHHRTVLDLLDNTARQKEVFPVGRL
                     DIDTHGLLLLTNNGQLAHAMLSPKKHVDKRYRAQVDGVMAQEDVERFAAGIELKDFTC
                     QPAQLTILSTDEAKQTSLIDITIREGKFHQVKRMVQACGKTVTDLQRLTMGPLRLDPK
                     LALGEYRRLTAAELKQLEVFGVEL"
     gene            complement(790..1239)
                     /locus_tag="U1335_000749"
     CDS             complement(790..1239)
                     /locus_tag="U1335_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5231248.1"
                     /translation="MDYFYIMPLPQDLALEIANQWRYQPPLDAYTISANPETYAEMIS
                     PEGRGDRFFAVIRNAALMGYFCMDQDGETVDIRLGMKPSLTGQGNGRAFYQTIEDYLV
                     EHVQPASIKLTVASSHQVAQKLFHALGFAEREKQAEYIKMEKKVVCD"
     gene            complement(1246..1416)
                     /locus_tag="U1335_000750"
                     /pseudo
     CDS             complement(1246..1416)
                     /locus_tag="U1335_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028520.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
     gene            complement(1452..2615)
                     /locus_tag="U1335_000751"
     CDS             complement(1452..2615)
                     /locus_tag="U1335_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5231249.1"
                     /translation="MKRILEKASLLALSTMLVSTFAVSPAIPQMIEHFAQQGIAAAQV
                     ENLITVTSFAIMVALLANGLVVRFLSERNIIIAGLLLMAIGGALPVFLTAYPLILLAR
                     ILLGLGIGLINARAINIIGNFFTGQERVQMMGLRGSAEVLGSAGLTLLVGWLTQFGWQ
                     PAFLVYLFALVILALFLLFVPKEELLARMEVKVEENAPKVKLDKTMWMMGIYLAFLAF
                     FVINVNTFLTIRIPQIVLAKGIGTAQQASLILSLMQVMGIVAGTVFSSLVGRLKGWLL
                     AVSYVVFGLAVIGIAFADNLWVLGLGGMVSGFFYSIILTIVFSQVTDRAPKALLNAVM
                     TIVLMGCNIGGATSAILPTYLEKLNPTPTGAFGIYAIGCALISAGLIYKQLKK"
     gene            2745..3359
                     /locus_tag="U1335_000752"
     CDS             2745..3359
                     /locus_tag="U1335_000752"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEM5231250.1"
                     /translation="MSVIERLTKAAHLIDMDDIIREGHPTLRQVAEEVAFPLSDQEII
                     LGEKMMQFLKHSQDPVMAEKMKLRGGVGLAAPQIDVSKRIIAVLVPNPEDEEGNPPAQ
                     AYSLQEVMYNPKIVAHSVQEAAMEGGEGCLSVDREVQGYVVRHARVTVDYMDKNGETH
                     RIKLKGFNAIVVQHEIDHLNGVMFYDRIDPEHPFAVKEGMLVIE"
     gene            complement(3404..5746)
                     /locus_tag="U1335_000753"
     CDS             complement(3404..5746)
                     /locus_tag="U1335_000753"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231251.1"
                     /translation="MRLNFEIKKILWSPLYCLLVLGFLGLAYLPISQRQAHQAAYVET
                     YKEELSELASVLAEIKIEEGSEEAPRMLGLKSDIESVRQALDEGKFEAIPNYRKLMYQ
                     DLDYFISRNRQLFQTRNSFTQTEGERLARWNDWLLEHQLPDGPENKAWSTGRIVQAYL
                     ESLFGFLPVFLVLGFLLANQLSEKTLAHQVWQLRQWDSLSLQGIRRLVASMLSLLFAV
                     GIGLLFIMVYDGLTGQLAVSSFQAPVEILGQSQLIGSWLYGLILLGFWLVLLLAVRLL
                     FGFLDHLLASRLTFVVTGLLLAVVLSYQAGAVAGWSGQVLPLLAFPSFLDTGAFSQVF
                     LQVDVFLLLTIGLFVAYYVLTEKKRLVLTVGHQKELETGPLDKAWSFEILILSRLNSW
                     KGLVLGNLLLALLFSLLTGLEKQEVAQEERVSMELVAQSYEQDGVYVESLQSEINRLR
                     QLVKEDASYQEELEWRVELLQEYHIYKDLYVKQWQVYQDNPNALPASHLAMLEAEQVY
                     LWAREEKAFANGDIGASQTVDNLRRYQTRNQVSQYYWKQLMEAGVPATKRGKDVILPS
                     LENRFDINDAFVPVDDPSWDRSRDLSGIGSLRSLFDGPAYLVVLLLAVWIGSRGKAVE
                     VAGKNWRLYQTQPVDLRQVLLTKWLLGLGQALGFTMLFLASLFLVNSLVGGICYLEDG
                     LILLSHSERGIFLELLRGQELWAWFLPNAPYLLWMVLGLLVLDIVLVSLNHLLQVRFS
                     NRLVVFILLAGLLALLDYLLFQDLVLDGQEVFRQLALLFS"
     gene            complement(5743..6627)
                     /locus_tag="U1335_000754"
     CDS             complement(5743..6627)
                     /locus_tag="U1335_000754"
                     /inference="COORDINATES: protein motif:HMM:NF012235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM5231252.1"
                     /translation="MLKVVDVCKRYGAHQVLSYVSFELQAGDLVALVGPNGVGKSTLL
                     NIISNTETADRGSVTINGRPNSDRAIFQDMSVMLDAQALYPQLTGYDHLTYVAATHKL
                     GKKEVDGLVEELGMGYYVKKRVAGYSMGMKQKLLFAMAVLPKPKLLLLDEPHIGLDPT
                     NIIQQREFLLNLQAEGVAILLSSHHLSEIEKLTNQVYFLKASKLIATEVELTADYDYH
                     LAVENSKQVQEFLRDYPQLLWKKAEQGLVEIFLPERDLLDCLDRIPIQQVAGLTKASD
                     YMESLYRDLYVEEGGEEI"
     gene            complement(6694..6906)
                     /locus_tag="U1335_000755"
     CDS             complement(6694..6906)
                     /locus_tag="U1335_000755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231253.1"
                     /translation="MEQLDKNTLFLSAVIVLSCSVLLFHMDPIRIVDREIWLWLHSFI
                     HVLFLKPAASLGFLMGLYLLYKALKK"
     gene            complement(7359..8438)
                     /locus_tag="U1335_000756"
     CDS             complement(7359..8438)
                     /locus_tag="U1335_000756"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231254.1"
                     /translation="MKKWIIFLLPLLLVMGGCTKQSSKQDYDFVLSDRQNLVAFKWNG
                     NAIEKVGKITNVLPEQVSFYFYNTFEFSNRVLGSSASYGGKNFFLYDLDKETLAVRTR
                     KTSSGEPKGEALTASEEGIIYGIVVTMEDIQLIKYKEDLQVEKSVSFSNSTAMGKQCI
                     YDTIAVGDKVYATIGIQDDASARIKFELWILNTELDLEQKISLDVNEDRRKVGYDLAY
                     GDGILYIAQWLEVDLYGDIKSGGKSIQTLNLSTMELGEISLENPYPKYLTYDKEKHIL
                     QVSHDSTEVADNLVTFVEMKTGEQKTIKLDGGSSYYYFTKRGEDYFYVFPQKMIKYTY
                     DTEERIEYNLEEYDIKSSDIMFFSD"
     gene            complement(8456..8602)
                     /locus_tag="U1335_000757"
     CDS             complement(8456..8602)
                     /locus_tag="U1335_000757"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231255.1"
                     /translation="MKKKVAYLTIVILVLVISVIRIFSEPDEDIYETQPATHLVGKFI
                     YRRY"
     gene            8798..9658
                     /locus_tag="U1335_000758"
     CDS             8798..9658
                     /locus_tag="U1335_000758"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5231256.1"
                     /translation="MRWDYGSVYKSIRKSKHLSQEQICGDFINRTTLVRFEKNQNIPS
                     YELMRFLLKQVDMTFEEFEYLCNYYQPSQRQQLLYDIDKLRNPTTKTMEGLIKRCQDH
                     LKKEPNDIPIHRKCLLLETVVAVRKSSSITQLSDEAETLSKLLWSQLEGYDNWYHSDI
                     ILVGTLLSKISSLDSLEETANLLLKRLEKYKDYKRIQPTILSHYQSLSYFFLEQRQYS
                     KSTFFATKLMDLAKQEKRYDQLARAYVYLGLAENKQGLIDKGLQILELTDEKRLVDNL
                     QFLIKQHQTD"
     gene            complement(9723..10508)
                     /locus_tag="U1335_000759"
     CDS             complement(9723..10508)
                     /locus_tag="U1335_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002276310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HEM5231257.1"
                     /translation="MTKQIHWDGALSQEGFDIIKGEGGVIVCPTKVGYIIMTADKAGL
                     ERKFDAKERKRNKPGVVLCGSMEELRELAQLTPEIDAFYQKHWDEDILLGCILPWKPE
                     AYAKLQAYGDGREELMTDVRGTSCFVIKFGVAGEQIAKEMWEKEGRMVYASSANPSGK
                     GNRGKVEGIGERIASKVDLIIEADDYVASIQPDKTIETRYEQGVMVSMVDKDGKLIPE
                     QGADSRSISPCPVVIRKGLDIDKIMMHLSDHFNSWDYRQGEYY"
     gene            complement(10571..11164)
                     /gene="leuD"
                     /locus_tag="U1335_000760"
     CDS             complement(10571..11164)
                     /gene="leuD"
                     /locus_tag="U1335_000760"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018167039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEM5231258.1"
                     /translation="MHQFTTWTGTTVPLMNDNIDTDQLLPKQFLKLIDKKGFGKYLLY
                     AWRYLDDNYTDNPDFILNQPEYQGASILISGDNFGAGSSREHAAWALADYGFKVIIAG
                     SFGDIHYNNDLNNGILPIIQPKEVRDQLAQLGPDQEITVDLADQLIRTPFGEFPFDIE
                     QDWKHKLLNGLDDIGITLQYQDLIEEYERNRPSYWQE"
     gene            complement(11164..12555)
                     /gene="leuC"
                     /locus_tag="U1335_000761"
     CDS             complement(11164..12555)
                     /gene="leuC"
                     /locus_tag="U1335_000761"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEM5231259.1"
                     /translation="MSGKSIFDKLWDRHVITGQEGQPQLLYVDQHYIHEVTSPQAFQG
                     LRDTGRPVRRPDLTFATFDHNVPTVDIHNIRDVISKAQMDALAKNIEDFGIPHAAHGS
                     EHQGIVHMVGPETGRTQPGKFIVCGDSHTATHGAFGAIAFGIGTSEVEHVLATQTIWQ
                     VKPKRLLVEFIGQAQRGVYAKDFILALIARYGVDCGLGHVVEFAGPIIDRLSMEERMT
                     ICNMSIEFGSKMGIMAPDQTTFDYLRGRECAPADFEAAVADWKELYSDADTVYDKHLV
                     LDVSDLAPMVTWGTTPAMGVSFDEIFPAIRDHNDERAYAYMDLAPGQKAADIPVGYVF
                     LGSCTNARLSDLQLAARIVKGRKIAEQVMAIVVPGSRPVKRAAEKLGLDKIFMEAGFE
                     WRDPGCSMCLGMNPDKVPAGVHCASTSNRNFEDRQGFGAKTHLCSPAMAAAAALYGRF
                     VDTRQLDILKEGV"
     gene            complement(12558..13604)
                     /gene="leuB"
                     /locus_tag="U1335_000762"
     CDS             complement(12558..13604)
                     /gene="leuB"
                     /locus_tag="U1335_000762"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEM5231260.1"
                     /translation="MTKKIVALAGDGIGPEIMEAGLAVLEAVAGQVGFDYEIEERAFG
                     GAGIDAAGHPLPDATLQACRQADAILLAAIGSPQYDDAAVRPEQGLLQLRKELGLFAN
                     IRPVKIFDSLKDYSPLKADRLDGVDLVMVRELTGGIYFGEHILETDQASDSNTYQAEE
                     IERVVRSAFDLAQKRRKKVTSIDKQNVLATSKLWRKVADEVAKDYPDVVLEHQLVDSA
                     AMLLITNPSRFDVLVTENLFGDILSDEASVLTGTLGVLPSASHAVAGSSLYEPIHGSA
                     PDIAGQGIANPVSMILSVAMMLEESFDLVQAGQTIRQAVEAVFAEGIFTKDLGGTAST
                     KEMTEAIIAQIGGG"
     gene            complement(13613..15175)
                     /locus_tag="U1335_000763"
     CDS             complement(13613..15175)
                     /locus_tag="U1335_000763"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEM5231261.1"
                     /translation="MRVIEFLDTTLRDGEQTPGVNFSIKEKVTIAKQLEKWGISAIEA
                     GFPAASPDSFEAVRQIAAAMTKTAVTGLARSVKSDIDACYEALKDAKYPQIHVFIATS
                     PIHREFKLQKTKEEILAQITEHVSYARERFEVVEFSPEDATRTELDYLLEVVQTAVDA
                     GATYINIPDTVGFTTPQHYGEIFRYLTTNVKSDREIIFSPHCHNDLGMAVANTLSAIK
                     NGAGRVEGTINGIGERAGNAALEEVAVALEIRKDFYDVTSPIVLKETLNTSELVSRFS
                     GIAIPRNKAVVGGNAFSHESGIHQDGVLKNPLTYEIITPELVGVKKNSLPLGKLSGRH
                     AFVEKLKELDLYFEEGDVASLFARFKKLADKKEKITDADIRALVAGTEISNRDGFQFK
                     DLRLDSQSDGSIQAQVIFINQDEEEVVVAESGKGSVEAVFNAIDQFFHQEISLERYHI
                     DAITDGIDAQARVLVAVENKATETIFNASGIDFDVVKASAIAYIHANVMVQKENSGQI
                     DKKLSEKDLPHI"
     gene            complement(15561..15794)
                     /locus_tag="U1335_000764"
     CDS             complement(15561..15794)
                     /locus_tag="U1335_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HEM5231262.1"
                     /translation="MLTSIIAGAIIGLIAGALTSSDDRRGCLGNIILGLAGSWIGQLL
                     FGDWGPQFAGMALVPSVFGAVLLVAIFSSSRRN"
     gene            complement(15854..17095)
                     /locus_tag="U1335_000765"
     CDS             complement(15854..17095)
                     /locus_tag="U1335_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HEM5231263.1"
                     /translation="MVLPNFKENLAKYAKLLVSTGINVQPGHTVQLTIGVEQAELARL
                     IVKEAYAHGAKEVLVNWLDDVIARERLVNVDVELLEQVHPQRITEMNYLLERKASRLV
                     VLSEDPGAYDGVDPEKLSRNARALSQALNPMRQATQANKVSWTLGAASGLEWAKKVFP
                     NAASDEEAVDLLWDQIFKTCRIYEEDPIKAWEEHEARLVAKAKVLNDEQFVKLHYTAP
                     GTDLVLGMPKNHLWEAAGSVNAQGEHFIANMPTEEVFTAPDYRVADGYVTSTKPLSYN
                     GNIIEGIKVTFKDGEIVDVTAEKGDEVMKKLVFDNAGARGLGEVALVPDKSPISQSGV
                     TFFNTLFDENASNHLAIGQAYAFSIEGGTEMSQEELKEAGLNRSDVHVDFMIGSNKMN
                     IDGIREDGTRVPIFRDGEWAI"
BASE COUNT         4889 a         4343 c         3422 g         4537 t
ORIGIN      
        1 aaaacgaaaa attgttgacg aactcttttt ttgacagtcg agttctttcc cgctccctct
       61 tctattttat ctataattcc accccaaaga cttctaattg ctttaattcg gcagcagtca
      121 acctgcgata ttctccaagc gctaattttg gatctaagcg aagaggaccc atggtcaatc
      181 gttgcaggtc tgtcaccgtc ttgccacagg cctgcaccat gcgtttgacc tggtgaaatt
      241 tcccttctcg gatggtgatg tcaatgagcg aggtctgctt agcttcatct gtagagagga
      301 tggtcaactg ggctggttga caggtaaagt ctttcagctc aattcctgcc gcaaatcgtt
      361 cgacatcctc ttgggccatg accccgtcaa cctgtgcacg gtagcgttta tcaacatgtt
      421 ttttcggaga aagcatggca tgagccagct gaccgttgtt ggtcaagagg agcaagccat
      481 gggtatcgat gtccaagcgt ccaacaggaa aaacttcctt ctggcgagct gtattatcta
      541 gcaggtccaa aacagtccga tggtggtcat cctcggttgc tgaaataact cccttgggct
      601 tgttcaataa ataataaaca aaggtttcat gactaaggac ttgacctgct agtgcaatct
      661 gatctgactt ttcatcaatc tgctgttttg gggaggtttc tacttggccg ttgactgtga
      721 cttgcttgtt tttcaggagt ttcttgactt ctgtccgact gccgacacca cagtccacta
      781 aaaatttatc taatcgcata cgactttctt ttccattttg atatattctg cttgcttttc
      841 tctttctgca aatccaagag catgaaagag tttttgggca acttgatgag agctagcaac
      901 tgtcagtttg atactagctg gctgaacatg ctctactaaa tagtcttcaa tagtctggta
      961 gaaagctctg ccatttccct gacctgtcaa agaaggtttc atccccaaac gaatgtcaac
     1021 tgtctcgcca tcttggtcca tacagaaata gcccatgagg gcggcattgc ggatgactgc
     1081 aaaaaagcgg tccccacgcc cctctggtga aatcatctca gcataagtct cggggtttgc
     1141 actaatcgta taagcatcca aaggtggttg atagcgccat tggttagcaa tttccaatgc
     1201 cagatcctgg ggcagaggca tgatgtaaaa ataatccatt cttcggaaat tttttgctaa
     1261 atttttaatc ctgcggtttt gggtggcata attatctgtt tgataaacat aatccacata
     1321 gcctagctga taagagggaa tcatgtcctt aaaaatcaac tgaacatcct cgggaaaacg
     1381 gagtattaat tcattcaagc ggttgttttc taacataaga atattatacc aaaaggagcg
     1441 gaaatccgct cctacttctt cagttgttta taaatcaaac ctgcgcttat caaggcacag
     1501 ccgatggcgt aaataccaaa ggcacctgtt ggggttgggt tgagtttttc cagataagtc
     1561 ggcaagatag cagatgtcgc accgccgata ttgcagccca taaggacgat tgtcatgacc
     1621 gcattgagca aggccttggg tgcacggtct gttacctgac taaagacaat ggttagaatg
     1681 atgctgtaga aaaatcctga caccatgcca ccgagtccca gcacccagag attatccgca
     1741 aaggcaatgc cgataaccgc gagtccaaag accacgtagg aaacagctaa aagccagccc
     1801 ttcaaacgac caaccaggct actaaagacc gtccctgcca caatccccat gacctgcata
     1861 agactgagaa tgagactggc ttgctgagca gtaccgatgc ccttggctaa aacaatctga
     1921 ggaatacgaa tggtcaggaa ggtattgaca ttgataacaa agaaggctaa gaatgccaga
     1981 taaattccca tcatccacat ggtcttgtct agtttgacct tgggcgcgtt ctcctcaacc
     2041 tttacctcca tgcgagccag caattcctcc ttgggaacaa agagaaggaa gagagccaag
     2101 atgaccaagg caaaaaggta gaccaagaag gcaggttgcc aaccaaactg ggtcaaccaa
     2161 ccgacaagga gggtaagccc tgcgcttccc aaaacttctg ctgaaccacg caagcccatc
     2221 atctgcaccc gctcctgacc ggtgaaaaaa ttaccgatga tattaatagc acgcgcattg
     2281 atcaagccaa tccctaaacc aagcaagata cgagccagca aaatcagagg ataagcagtt
     2341 agaaacacgg gcaaagctcc gccgatggcc ataagcaaaa gccctgcaat gataatgttt
     2401 cgttcagaca agaaacggac aactagacca tttgccaata gagcaaccat aatagcaaaa
     2461 gaggtcaccg taattaagtt ttccacctgg gccgctgcaa ttccctgctg ggcaaaatgc
     2521 tcaatcatct gtggaatagc tggcgagaca gcaaatgtcg aaaccagcat ggtggacagg
     2581 gccagcaaac tggctttttc taaaattctt ttcatttttc tccctttcag cgttcgtctt
     2641 ttactagtat agcagatttg agacagaata gataggtgac tgagactttt attctcctag
     2701 atttcatgct atacttatct taactatatt caaaggagag aatcatgtct gttattgaac
     2761 gattgacaaa agctgcccat ttgattgaca tggatgacat catccgtgaa ggacatccaa
     2821 ccctacgcca agttgctgaa gaagttgcat ttcctctatc tgatcaggaa attattttag
     2881 gcgaaaaaat gatgcaattc ctcaaacatt cgcaggatcc tgtcatggct gaaaaaatga
     2941 aactccgtgg cggagttggt ctagctgcac ctcagattga cgtttccaaa cgcatcattg
     3001 ctgtcttagt cccaaatcca gaagatgagg aaggcaatcc acctgcccaa gcctactccc
     3061 tccaagaggt catgtacaac cctaaaattg tggcacattc tgtccaagaa gcggctatgg
     3121 aagggggcga gggctgccta tccgttgacc gcgaagtcca aggttacgtt gtccgccatg
     3181 cgcgcgtgac tgttgattac atggacaaaa atggagaaac acaccgtatc aaactcaaag
     3241 gatttaatgc catcgtggtc caacacgaaa tcgaccacct caacggtgtc atgttctacg
     3301 accgcattga cccagaacac ccatttgccg ttaaagaagg catgctggtg attgaataaa
     3361 gataagaaac tgactgaaaa attttcagcc agtttttctt ttttcatgaa aatagcagag
     3421 ctaactgcct aaagacctcc tgcccatcca agactagatc ttgaaagagt aggtagtcca
     3481 gcagagccaa caaaccagct agtaggatga aaaccactaa gcgatttgaa aaccgaactt
     3541 gcaaaagatg gttgaggctg actagaacaa tgtccaaaac aagcaagcca agcaccatcc
     3601 acaagagata aggagcattg ggaaggaacc aagcccagag ttcttgtccc ctcaggagtt
     3661 caagaaaaat acccctctcc gaatgggaaa gcaagataag gccatcttcc agataacaga
     3721 ttcctccgac cagactattg actaggaaaa gactagctag aaagagcatt gtaaaaccaa
     3781 gggcttgccc caatcccagc aaccacttgg taagcaggac ctgacgcaaa tccacaggct
     3841 gggtctgata gagacgccag ttttttccag caacttccac cgccttgccc cgactgccaa
     3901 tccaaaccgc cagcaatagc accaccaaat aggccggacc atcaaaaaga gagcgcaggc
     3961 tgccgatacc tgacagatct ctggaacggt cccaagaggg atcgtctacc ggaacaaagg
     4021 catcattgat gtcaaaacga ttttccaagc tgggcaaaat gacatccttg ccccgcttag
     4081 ttgctggcac cccagcctcc atcagctgct tccagtaata ctgactgacc tgattgcggg
     4141 tctggtaacg gcgcagatta tctaccgtct ggctggcccc aatatcacca ttggcaaacg
     4201 ctttctcctc tctagcccat agatagacct gctctgcctc cagcatagca aggtgactgg
     4261 ctggcaaagc attaggattg tcctgataaa cctgccattg cttgacatag aggtccttat
     4321 agatatggta ttcctgcaga agctccactc tccactccaa ctcctcctga tagctcgcgt
     4381 cctctttgac caactgcctc agacggttga tttccgactg caaactctcc acatagaccc
     4441 catcctgctc ataggactgg gcaaccaact ccatcgaaac cctctcctcc tgggcaacct
     4501 cttgcttttc tagtcccgtc agtagggaaa atagcagagc taagagcaag tttcccaaga
     4561 cgagcccttt ccaagaattg agccgactaa ggatgagtat ttcaaaagac caagccttgt
     4621 ccaaaggacc ggtttccaat tctttctgat gcccaacggt caggaccagc cttttctttt
     4681 ctgtcagcac ataataagca acgaaaagcc caatggtcag caggaggaaa acatccacct
     4741 gtaaaaagac ctgcgaaaat gcacctgtgt ctaaaaaact cggaaaggct aacaaaggca
     4801 gaacttgacc tgaccaacca gcaactgcac cagcctgata ggaaagaacc acagccaata
     4861 gtaaccccgt cactacaaaa gtcaaccgac tggctaacaa gtggtccaaa aatccaaaaa
     4921 gtaggcgaac agctagaagc aagaccagcc aaaaaccaag caagataagt ccgtaaagcc
     4981 aagagccgat caactgactc tgacccaaaa tctcaacagg ggcttgaaaa ctagatacag
     5041 ccaactgacc tgtcagccca tcatagacca tgataaaaag caaacctatc ccaactgcaa
     5101 agagtagcga tagcatggag gcaaccaaac gcctgattcc ctgcaaactc agactatccc
     5161 attgccgcaa ttgccaaact tgatgagcca atgtcttttc tgacagttga ttggcaagta
     5221 aaaaaccaag caccaaaaat acaggaagaa aaccaaacaa actttctaag taggcttgaa
     5281 caatacgacc tgttgaccaa gccttgtttt caggaccatc aggcaattga tgctcaagca
     5341 accagtcatt ccatctggcc aaacgttcgc cttccgtttg tgtaaaggaa ttccgagttt
     5401 gaaaaagctg tcgattgcga ctgataaaat agtccaaatc ctgatacatg agtttgcggt
     5461 agttggggat agcttcaaac ttcccctcat ctaaggcctg acggacactt tctatatcgg
     5521 atttcaagcc cagcatccgc ggtgcttctt ctgagccctc ctcaattttt atctctgcca
     5581 aaacactggc caattcactc agttcttctt tataggtttc cacataggcc gcttgatggg
     5641 cttgacgttg tgagatggga agataggcca gacctagaaa acctagcacg agcaagcagt
     5701 agagaggcga ccagagaatt ttcttgattt caaagttcag cctcatatct cctcaccacc
     5761 ttcctccacg tagagatcac ggtagaggga ctccatatag tcgctggctt ttgtaaggcc
     5821 cgccacctgc tggattggaa tacgatccag acagtctagt aaatctctct caggcaagaa
     5881 gatttccacc agaccctgct ctgccttttt ccacaagagt tgaggataat cccgtaaaaa
     5941 ttcctgaacc tgcttggagt tttccacagc aagatggtaa tcataatccg ccgtcaactc
     6001 cacttctgtg gcaatcaact tgctagcctt gaggaaataa acctgattag tcagcttctc
     6061 aatctccgac aaatggtggg aagaaagtaa aatggcaacc ccttctgctt gtaggtttag
     6121 aagaaattcc cgctgttgaa tgatattggt cggatccaag ccgatatggg gttcatccag
     6181 caacaagagc ttgggcttgg gaaggacagc catggcaaag agcaacttct gcttcatacc
     6241 catggaataa ccagccaccc gctttttgac atagtagccc atccccaatt cttccaccaa
     6301 cccatccact tcctttttcc ccagcttgtg ggtggcagcc acataggtca gatggtcgta
     6361 acccgtcaac tgtggataaa gggcttgggc atccaacatg acagacatat cttgaaaaat
     6421 cgctcggtca ctattgggac gaccattgat ggttaccgac ccacggtcag cggtttctgt
     6481 gttgctgata atattcaaca gagtggattt ccccacacca ttgggaccta ctagggcaac
     6541 caagtccccc gcttgcagct caaaggacac ataggacaag acctggtggg caccgtatcg
     6601 cttacagaca tcgactactt ttagcataga aactcctttc ttggggaaat ggcagagcgg
     6661 tgcagcagac tttcatcagc ttagttagct cgactacttc ttgagagcct tgtatagcag
     6721 ataaagcccc ataagaaaac ctagactagc agcaggtttt aaaaatagca catgaataaa
     6781 tgaatgtagc cagagccaaa tctctctatc tacaatccga atcgggtcca tatgaaataa
     6841 taggacacta cacgaaagaa caataactgc acttaaaaat aaggtgtttt tatcaagttg
     6901 ttccattagg ttacaccttt tcataactga ctaattccaa ttcaactcta cactctagtt
     6961 aatcgttcaa tataataata gcattttttg tttatacaaa caagtaaaaa taggtattac
     7021 tttgacaaaa agagaagact gtaacaatct tctctatgca ttcgtatatt ggttgtcccc
     7081 tttgggtaaa caccatctta cttttctgcc atttcctcca gaaaatagat tactaactat
     7141 tcagagataa ggaaagccac aaacataaca atagagcaag aacctgtagt cagagttatc
     7201 ctccgactca gactggtttt taagttaccc atccttgttt tttcaaccaa cagttagtat
     7261 ttcctctaaa atttccctga ttagcgaaaa aaaacatttc ttatttcaag cacttaactt
     7321 gtgaatacag gttctctcat catgttgatg aagcatcact aatcactgaa gaacattata
     7381 tcagagcttt taatatcata ttcttccaaa ttatactcga ttctttcctc tgtatcatat
     7441 gtatatttta tcatcttttg aggaaaaaca tagaaataat cttcaccacg ctttgtaaaa
     7501 taataatagc tactgccacc atctaatttg atagttttct gttctccagt tttcatctca
     7561 acgaatgtaa ctaggttatc tgcaacctca gtcgaatcat gactaacctg taagatatgc
     7621 ttctccttat cataagttag atactttgga tatggatttt ccaaggaaat ctcccctaac
     7681 tccatagtag atagattcag agtctgaata gattttccac ctgattttat atctccatat
     7741 aaatcaactt ccaaccattg agcaatatag agaatcccat caccataagc taaatcgtac
     7801 cctaccttgc gacgatcttc gttaacatct aaactaatct tttgttcaag atctaactcc
     7861 gtatttaaaa tccataactc aaattttata cgagcactag catcgtcttg tataccaatt
     7921 gtcgcataca ctttatcccc aacagctatt gtgtcataaa tacattgttt ccccatcgca
     7981 gtggagtttg aaaacgaaac actcttttcc acctgcaaat cttctttata tttgatcaac
     8041 tgaatgtctt ccatagtaac aactatacca tagataattc cctcctcact agcagtaagg
     8101 gcttcaccct taggctctcc cgaactggtc tttcgagtcc ttacagcaag agtttcctta
     8161 tctaagtcat agaggaaaaa attttttccg ccataggagg cacttgaacc taggactcta
     8221 tttgaaaatt caaaagtatt ataaaaatag aaactaacct gttctggtaa aacgttagta
     8281 atctttccta ctttctcaat tgcattccca ttccacttaa atgcaactaa attttgacga
     8341 tccgaaagaa caaaatcata atcttgcttt gaagactgct ttgtgcaccc acccataacc
     8401 aataacaaag gtaggagaaa tattatccat tttttcatag ttactcctta cttccctagt
     8461 aacgacgata aataaacttc cccaccagat gagttgccgg ttgggtttca tagatatctt
     8521 catctggctc actaaaaatg cgaatgaccg agataactaa gaccaatata actattgtca
     8581 agtatgcaac cttctttttc atctttccct tcctcctctc tgatgggatt ttttcttgaa
     8641 taccttaact cctaccaaga atatcgtttc cgttcttcct tttctccttt ctacccgata
     8701 gaaattgatg tatattttat accattatga tatactattt ttacaaatat tgtttatttt
     8761 gttacatatt ttcacagttt tttgaaagga gtagattatg cggtgggatt acggcagtgt
     8821 gtataagagc attcggaaaa gtaagcattt aagtcaggag caaatatgcg gagattttat
     8881 caatcggacg accttggttc gcttcgagaa aaatcagaac attcctagct atgagctcat
     8941 gcggttcttg ctcaagcagg tggatatgac cttcgaggag tttgaatacc tctgtaacta
     9001 ctaccagccc agccaacgcc aacaattgct ctacgatata gataagctca gaaatccgac
     9061 cactaagacc atggagggtt tgataaagcg ttgccaggac catttgaaaa aagaacccaa
     9121 tgatattcct attcacagaa agtgcctcct cctggagacc gttgtagctg tccgaaaaag
     9181 ttcttctatc acccagcttt ccgacgaagc tgaaaccctt tctaagctcc tctggtccca
     9241 actagaagga tacgataact ggtaccatag cgatattatc ttagtaggca ctcttctgtc
     9301 caagatttct tcacttgata gccttgaaga aactgccaat cttcttctaa aacgattaga
     9361 aaaatacaag gattacaagc gaatccagcc caccatactc tcacactatc agtctctttc
     9421 ttattttttc ttggaacaaa gacagtacag caagtctact ttttttgcca ccaaactcat
     9481 ggacctagcc aagcaggaaa aacgctatga ccaactagcc cgtgcctatg tttacctcgg
     9541 actcgccgaa aacaagcagg gattgattga caaaggatta caaatcttgg aactgacaga
     9601 cgagaaaagg ctagtcgaca acctccaatt tcttatcaaa cagcaccaaa ctgactgaaa
     9661 tctcggtcag tttttttatg tgagtacgaa aaaacgaccc tttcggatcg ttctcaatta
     9721 tcttaataat attccccttg tctataatcc caagagttga aatgatctga caagtgcatc
     9781 atgattttat cgatgtccaa acctttacgg atgacaactg ggcatgggct gatagaacgg
     9841 ctatctgcac cttgttctgg aatgagttta ccatctttgt ctaccataga caccataacc
     9901 ccttgctcat agcgggtttc gatggtcttg tctggctgga tagaggccac atagtcatcc
     9961 gcctcgataa tcaaatccac cttagaagca atccgctcac cgataccttc taccttgcca
    10021 cgatttccct tacctgacgg gttagcagaa gaagcgtaga ccatacggcc ttctttttcc
    10081 cacatttcct tggcaatctg ctcgccagct acaccaaact tgatgacaaa gcatgaagtc
    10141 ccacgaacgt cggtcatcaa ctcttcacga ccatcgccgt aagcttgcaa tttagcataa
    10201 gcctctggtt tccacggcag gatacaaccc aacaaaatgt cctcatccca atgtttttgg
    10261 tagaaggcat caatctcagg agtcaactga gccaactcac gaagctcctc catgctacca
    10321 caaaggacca cgcccggctt attacgcttg cgctctttag cgtcaaactt acgctccaag
    10381 ccagccttgt cagcagtcat gatgatgtaa ccaaccttcg tcgggcagac aatcacgcct
    10441 ccctcaccct tgataatgtc aaaaccttct tgtgaaagtg cgccatccca gtgaatttgt
    10501 ttcgtcataa taatttcctc ttttctttta ttccatagca gagcgatctg cttgttttct
    10561 aatatatatt ttattcttgc caataacttg gccgattcct ctcatactcc tcaatcaaat
    10621 cctgatactg aagggtaata ccgatatcgt ctaagccatt gagtaatttg tgtttccagt
    10681 cctgttcgat gtcaaatggg aattccccaa aaggcgtccg tatcaactga tctgccaagt
    10741 caaccgtgat ttcttggtca ggacccagct gagctagttg gtccctgact tctttgggct
    10801 ggataatggg cagaatgcca ttgtttaagt cattgttgta atgaatatct ccaaaggagc
    10861 ctgcaatgat aaccttgaag ccataatctg ccagagccca agcagcgtgt tccctagaag
    10921 aacctgctcc gaagttatcc ccagatatga ggatactagc gccttgatac tcaggctgat
    10981 tgagaatgaa gtcaggatta tccgtgtagt tatcatccaa gtaccgccaa gcatatagca
    11041 gatatttgcc aaatcccttt ttgtcaatca gcttgagaaa ctgcttgggc aagagctggt
    11101 cggtatcaat attatcattc atgagcggaa cggtcgtccc tgtccatgtg gtaaattggt
    11161 gcattagact ccctccttga gaatgtctag ctgtctagtg tcaacaaatc gtccataaag
    11221 tgcagctgcg gcagccatag caggactaca caagtgggtc ttggccccaa agccctgtcg
    11281 gtcttcaaag tttcgattac ttgtggaggc gcagtggaca cctgcaggca ccttgtctgg
    11341 attcataccc agacacatgg agcaacctgg atcccgccac tcaaaaccag cctccataaa
    11401 aatcttgtct agcccaagct tttctgcagc tcgcttgaca gggcgactac ctggtacgac
    11461 aatagccata acctgctctg ctattttccg ccccttaaca atcctagctg ccagctgcaa
    11521 atcgctgagg cgagcattgg tacaagagcc taggaagaca tagccaacgg gaatgtccgc
    11581 agccttttgc ccaggagcta agtccatgta agcataggca cgctcgtcgt tgtggtcacg
    11641 gatggctggg aagatttcgt caaagctaac ccccatagca ggggtggtcc cccaagtgac
    11701 catgggtgcc aagtctgaca catcaaggac tagatgcttg tcatagacgg tgtcggcgtc
    11761 tgagtagagc tccttccaat ctgccaccgc cgcctcaaag tccgctggtg cacactcccg
    11821 acctcgcagg taatcaaaag tggtctggtc aggagccata atgcccatct tagaaccgaa
    11881 ctcaatggac atattgcaaa tagtcatccg ctcttccata ctgagtcggt cgatgattgg
    11941 accagcaaac tccaccacat gccccaagcc acaatccacg ccgtagcggg caatcagagc
    12001 caggataaaa tccttagcat agacgcctct ttgcgcctga ccgataaact ctaccaagag
    12061 ccgcttgggc ttgacctgcc aaatggtctg ggtagcgaga acgtgctcta cttcagaagt
    12121 accaatccca aatgcgatag ccccaaaggc tccgtgagtc gctgtatggc tatctccgca
    12181 gacaatgaac ttacctggct gtgtcctgcc tgtttctggt ccaaccatgt ggacaatccc
    12241 ctgatgttcc gaaccgtggg ctgcgtgggg aatgccgaaa tcttctatat tcttagccaa
    12301 ggcatccatc tgagccttgg aaatgacatc acggatattg tgaatatcaa cggttggcac
    12361 gttgtggtca aaagtcgcaa aagtcaagtc tggtcgccga acaggtcgcc ctgtatccct
    12421 cagtccttga aaggcctgag ggctggtcac ctcatggata tagtgctggt ccacatagag
    12481 gagctggggc tgaccttcct gccctgtaat cacatggcga tcccagagct tatcgaaaat
    12541 ggatttgcca ctcatatcta cccacctcca atctgggcaa taatggcctc agtcatttct
    12601 ttggtagagg cggtcccacc cagatccttg gtgaaaatgc cttctgcaaa gaccgcttca
    12661 acggcttggc gaatggtctg acccgcttgg accaaatcaa aactttcttc cagcatcatg
    12721 gcaacagata gaatcatgct gacagggttg gcaatgccct gacctgcaat atccggtgcc
    12781 gaaccatgga taggttcata aagactagaa cctgccaccg catgactagc agaaggcaga
    12841 acccctagcg ttcctgttaa tacgctggcc tcatccgaca aaatatcacc gaaaagattt
    12901 tccgtcacca agacgtcaaa tcgactagga ttggtaatca agagcatggc tgcgctatcc
    12961 accaactggt gctccaagac cacatctggg tagtccttgg ctacctcatc cgccaccttc
    13021 cgccataatt ttgacgtcgc cagtacattt tgtttatcaa tactggtgac tttttttcgt
    13081 cttttttggg ctaggtcaaa ggcagagcgg acaacccgtt caatctcttc tgcctgatag
    13141 gtattgctat cgctggcttg gtcagtttca aggatatgct ctccaaaata tatcccgcct
    13201 gtcagctccc ttaccatgac caaatccaca ccgtccagtc ggtcggcttt cagaggagaa
    13261 tagtctttca ggctatcaaa aattttcacc ggacgaatat tggcaaagag acccaattcc
    13321 ttccgaagtt gaagcagacc ttgttctgga cggaccgccg catcatcata ctgaggacta
    13381 ccgattgctg ctaacaaaat cgcatccgcc tgacggcagg cttgcaaggt agcatctggt
    13441 agaggatggc cagccgcatc aatcccagca ccaccaaaag ctctctcctc aatctcataa
    13501 tcaaatccta cttgcccagc cacagcctcg aggactgcta ggccagcctc catgatttca
    13561 ggaccgattc catcaccagc caaggctaca atttttttcg tcatatttcc tcctagatgt
    13621 gtggcaagtc tttctctgat agtttcttat ctatctgtcc gctattttct ttttgcacca
    13681 tgacattagc atggatatag gcaatggcag aagccttcac cacgtcaaag tcaataccag
    13741 aggcattaaa gattgtttcc gttgccttgt tttctacagc gacaagcaca cgagcctggg
    13801 catcaattcc atcggtgatg gcgtcaatat ggtagcgttc caagctaatc tcttggtgga
    13861 agaattggtc aatagcatta aagacagcct caacagaacc cttgcctgac tctgcaacaa
    13921 ccacttcttc ctcatcctga ttgatgaaga tgacctgagc ctgaatactt ccgtcagact
    13981 gactatccaa acgcaaatct ttaaattgga agccatcacg attgctaatt tctgtcccag
    14041 ctactagagc tcgaatatcc gcatccgtaa ttttttcctt cttgtctgcc agttttttga
    14101 aacgagcaaa caagctagca acgtctcctt cttcaaaata caggtctagt tctttcagct
    14161 tttctacaaa ggcatggcga ccagatagtt tccccagtgg cagagaattt ttcttgaccc
    14221 ctaccaactc aggtgtaatg atttcatagg tcaatggatt tttcaataca ccatcttggt
    14281 gaattcctga ctcgtgagag aaagcattgc caccgacaac cgccttattg cgtggaatgg
    14341 caatcccaga aaagcgagag accaattccg aagtattgag cgtttcctta agaacaatcg
    14401 gactagtcac atcatagaaa tctttccgaa tttcaagggc aactgctact tcttcaaggg
    14461 ccgcattccc tgctcgctca ccgataccgt tgatggtccc ctcgacacga cctgcaccgt
    14521 ttttaatagc tgaaagggta ttggcaactg ccatacctag gtcattatgg caatgcggac
    14581 tgaaaataat ctcacggtcc gatttgacgt ttgttgtcaa gtaacggaaa atttctccgt
    14641 agtgctgagg agtcgtaaag ccgactgtat ctggaatgtt gatgtaggtc gcaccagcat
    14701 ctaccgctgt ctgcaccact tctagcaagt aatccaactc cgtccgtgtc gcatcctctg
    14761 gcgagaactc caccacctca aaacgctcac gggcatagct gacatgttca gtgatttgcg
    14821 ccaaaatttc ttctttggtc ttttgaagtt taaattcacg gtggatggga ctggtcgcaa
    14881 tgaaaacatg gatctgcgga tacttggcat ctttcagagc ctcataacaa gcatcaatgt
    14941 ctgacttgac tgaccgtgcc aaacctgtca cagccgtctt ggtcatcgct gccgcaatct
    15001 gacgaaccgc ttcaaacgaa tcaggactgg ccgctgggaa acccgcttca atggcagaaa
    15061 tcccccattt ttccaactgc ttggcgatgg tcactttttc cttgatagaa aaattcacac
    15121 ctggcgtctg ttcaccatct cgtaaagtcg tatctaaaaa ttcaatcaca cgcataagaa
    15181 tacctttcta aataagccta acgtaaatat ttagttctcc ttcttagtta tctaagtaaa
    15241 ctaaataaaa gaaaacacct cgaggattac tacccgcgag atgttgtcaa cagcgcccgc
    15301 ttggtaagcc aaacaggact aatgctacct agtgcactag cccgaccgtc gcaacaacaa
    15361 agcaaagaat tttgtagtga caggtttcat ttgacttttt cctctctgtg ttttacttgt
    15421 tttccatgat aacgtacttt ttttcacttg tcaacagaaa aatggaaatt ttctgaaaaa
    15481 tccgaacaat agagcaattt acgcaaattc ctccacaaat aaaaccaaac ctcatcagaa
    15541 gtctggtctt acagttcata ttaattccgt ctagaacttg aaaaaatagc cactagcaat
    15601 actgctccaa agactgacgg taccagagcc atgccagcaa attgtggtcc ccaatcacca
    15661 aagagcaact gtccaatcca tgaaccagca agcccaagga tgatatttcc cagacagcca
    15721 cgacggtcat ctgatgaggt caaagcccca gcaatcaggc caataatggc tcccgcgata
    15781 atacttgtta acatcttgtt ttcctcctat tcttacaaaa taagactggt tgcccagtct
    15841 tatacacata tcattaaatc gcccactcgc cgtcacggaa gattggtaca cgggtaccgt
    15901 cttctcggat accgtcaatg ttcatcttgt tagaaccaat catgaagtcc acatggacat
    15961 ctgaacggtt gagaccagct tctttcaact cttcttggct catttctgta ccaccttcga
    16021 tagagaaggc ataggcttga ccaatcgcca agtggtttga ggcattttca tcaaagaggg
    16081 tgttgaagaa ggtcacgcct gattgagaaa tcggactctt gtctggcaca agagcaactt
    16141 caccaagacc acgtgctccg gcattatcaa agactaattt cttcatgact tcatcgcctt
    16201 tttcagccgt cacgtccaca atttcaccgt ctttgaaggt taccttgatg ccttcgatga
    16261 tgttaccgtt gtagctgagt ggtttagttg acgttacata gccatctgcc acacggtagt
    16321 caggtgctgt gaagacctct tctgttggca tgttggcaat aaagtgttca ccttgggcat
    16381 tgaccgaacc agccgcttcc cacaagtgat ttttcggcat accaagaacg aggtcagttc
    16441 ctggagctgt gtagtgcaat ttgacaaact gctcgtcgtt aaggaccttg gccttagcca
    16501 ccaagcgtgc ctcgtgctct tcccaagcct tgatcggatc ttcctcgtag atacggcaag
    16561 tcttgaagat ttggtcccaa aggaggtcca ctgcctcttc gtcagacgct gcatttggga
    16621 agactttttt agcccattcc aaaccagagg ctgcaccaag tgtccaacta accttgttag
    16681 cttgcgttgc ttgacgcatt gggttcaaag cctggctgag agcacgagcg ttgcgagaca
    16741 atttctctgg atcaacgcca tcgtaagcac ctggatcttc tgacaagacc accaaacggc
    16801 tggccttacg ctccaagagg tagttcattt cagtaatgcg ttgtggatga acttgttcca
    16861 agagttccac atctacattg accaaacgtt cacgcgcaat cacatcgtcc aaccaattga
    16921 ccaatacttc cttagcaccg tgggcgtagg cttctttgac aatcaagcgt gccaactcag
    16981 cctgttccac accaattgtc aactgcaccg tgtgaccagg ttgcacattg atacctgttg
    17041 aaaccaagag tttagcatat ttagcaagat tttctttaaa atttggtaat accatttttt
    17101 tctcctttgt actttgaaat accctattat tgtatcatat tttaagctag acagataaaa
    17161 aaacttcctg ctgatacagg aagtctcaga t
//
LOCUS       DASGAC010000030        17141 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.030, whole genome shotgun sequence.
ACCESSION   DASGAC010000030 DASGAC010000000
VERSION     DASGAC010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17141)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17141)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17141
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.030"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(77..1624)
                     /gene="cls"
                     /locus_tag="U1335_000766"
     CDS             complement(77..1624)
                     /gene="cls"
                     /locus_tag="U1335_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HEM5231264.1"
                     /translation="MKKLWKIIYSRVFIVLALLLLTVFAIFWVVGSLAVYVPAILTVL
                     QLFSIIVAISIINRPMNASFKLTWIIFVIGVPIFGALFYFILQSNLETQRYRRTFKRQ
                     AAVMREYGHTSEKVMKGLAGEDKEQLKLAHYMSEYVGYPLHTNTDAVYFPSGEAKFEA
                     LLEELKKAEQYIFMEYFIVDFGYMWESILTILKEKAEQGVEVRFLYDGMNSLSLLPYN
                     YYKTLRSYGIKAKVFSQIIPALSTVQNNRDHRKITVIDGKVAFTGGVNIADEYINQKE
                     RFGYWKDAAIMVKGEAVANFTNMFLQMWNFDERKENDDLAYLRAHKESESDTVAGEGY
                     FLAYGESPFDNDEVAKRVYLDMIQSATDYIYIMTPYLVLDDEMIDNLTYAAKSGVRVK
                     ILLPHIYDKQSAYLVARTDFRTYLEAGIEIYEFTPGFVHSKVVLVDDKKATVGTVNMD
                     FRSFYLNFECGLYVYNHKQVLADIHKDFEDSFAQSQRITLLGFENTYPWYKRLAGALM
                     NIISPLL"
     gene            complement(1798..3972)
                     /locus_tag="U1335_000767"
     CDS             complement(1798..3972)
                     /locus_tag="U1335_000767"
                     /EC_number="3.6.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HEM5231265.1"
                     /translation="MNHSKENEQEHQHMMHSEEVGQTSHHSHQQEHPHEEGVHANHHS
                     DHHVHHDHHHVGGSDVSHHSHHTHDAHQHHQGHDHDMMEHGGHMMHMGDMNTKLKVAV
                     AVMIPLLAISPIAGFTLLRFPGVELVQLILGSIIFFYSGTPFFNGARGELQAKKPAMM
                     TLISMGIIVSYLYSVYATILALLGQESMNFWFELSTLIVIMLIGHIIEMKAVMGAGDA
                     LKDLASLIPKKAHLKDGTDVAVEDLQIGDFLLVKENEKIPADGKILSVAHIDESMITG
                     ESRAVKKEAGDRVFGGSLNQNTPFEMEVTSLGKDSFLAEVTEMVRQAQNQKSKLENMA
                     DRVASWLFYAALIMGILAFIYWTMTANLAFALMMAVSVFVIACPHALGLAIPLVVARL
                     TTISSKNGLLVQNRTALEQVNQIRFALMDKTGTLTDGKFQVRHSQDLVEGADALAKMA
                     ALEVLSTHPIALSIVEAAGPLFYQAERVENIPGSGIRGVLDGRIYEIMSYKGLQEIGL
                     SVDQDVIAPYLDLGLTLSFLVTDHVVLGFVALGDQIREDAKDFVAGLKAQGISPVMLT
                     GDNPATAQKVAIQLGIEDYRAELKPEDKAKLVKDYQARGAVLFIGDGVNDSPALATAD
                     LGFAIGAGTSVAIHSADVVLVQSNPSAVLDMLSIAKTTIRKMRQNLWFGAGYNIIAIP
                     LAAGILYPSMGIMVDPLLAAVLMSLSTVIVAINAMGLRYGKP"
     gene            complement(4116..4871)
                     /locus_tag="U1335_000768"
     CDS             complement(4116..4871)
                     /locus_tag="U1335_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM5231266.1"
                     /translation="MRTILITGASGGLVQEMVPLLKDDFLILLGRDVAKIEQLYAYHE
                     KKAVFDVDIRDEIALTAFFDELDSQFGQIDILVNNAGYAIYDDFENFSSQQVQAMFDI
                     NTFALMTMCRLVGKRMKASRSGQMINIISMSGLIASSKSSVYSATKFAAMGFSNTIRL
                     ELAQYGVTVTTVNPGPIATSFFDQADPDGTYRESVKAFLLQPDYVAKKIVSAMGTKKR
                     DINLPWSLAAAHKLYTLFPRLADYLASTVFNLK"
     gene            complement(4868..5797)
                     /locus_tag="U1335_000769"
     CDS             complement(4868..5797)
                     /locus_tag="U1335_000769"
                     /EC_number="3.1.26.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000354350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HEM5231267.1"
                     /translation="MQIQFLGTGAGQPSKARNVSSLALKLLDEINQVWLFDCGEGTQN
                     QILETTIRPRKVAKIFITHLHGDHIFGLPGFLSSRSFQSSEEQTDIDIYGPVGIRSFV
                     LASLKVSGTRLPYRIHFHEFDVDTVGQVLETDKFTVFAEKLDHTIPCVGYRVIQKDLE
                     GTLDAEALRAAGVPFGPLFGKIKNGQNVTLEDGTEIIASDYISPPRPGKVVTILGDTR
                     KCHASVRLAVNADVLVHEATYGKGDEKIARKHGHSTNMEAAQVAKDAGVKQLLLNHIS
                     PRFLSKDISQLRKDASTIFEQVHIVKDLEEIEV"
     gene            complement(5808..6437)
                     /locus_tag="U1335_000770"
     CDS             complement(5808..6437)
                     /locus_tag="U1335_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HEM5231268.1"
                     /translation="MTDYLDLAIKYGGFTSLDKVYLAKKLADLTDQQKLDFITPPPSV
                     INAYFAEIYQKQGAEEATDYYLTLSQQLSLFPKEPSFAEDKPFVRLNLSGKSFGFAYV
                     SADGLAQVFSEQVEEVTDSLLFEIAQVFPHYVVFVEEGKIFIKAKPFEDAELEEVETD
                     YLLTQVATAKGLVKISGFNQEEVVEVAEGFSGQYYYVWSGRSAILYIKH"
     gene            complement(6421..7671)
                     /gene="hflX"
                     /locus_tag="U1335_000771"
     CDS             complement(6421..7671)
                     /gene="hflX"
                     /locus_tag="U1335_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEM5231269.1"
                     /translation="MIETQKEQERALLVGVELQQTDNFDMSMEELASLAKTAGALVKG
                     VYTQKREKYDSKTFVGSGKLEEIAQMVEADEIDTVIVNNRLTPRQNVNLEEILGVKVI
                     DRMQLILDIFAMRARSHEGKLQVHLAQLKYMLPRLVGQGIMLSRQAGGIGSRGPGESQ
                     LELNRRSIRNQIHDIERQLKTVEKNRATVRERRLQSGVFKIGLIGYTNAGKSTIMNAM
                     TDKRQYEADELFATLDATTKQINLADKFNVTLTDTVGFIQDLPTELISAFKSTLEESM
                     NVDLLLHVIDASDPNHSEQEQVVLDILKDLDMLDIPRLALYNKLDKTDDSFTPSQFPH
                     VMLSAKADNAKGHIQMMVLAKMKTMFERFEVRVPLAEAYKLHDLATLALIENRTYEED
                     VEVVSGYIASSNKWKLEEFYDGLS"
     gene            complement(7664..8548)
                     /gene="miaA"
                     /locus_tag="U1335_000772"
     CDS             complement(7664..8548)
                     /gene="miaA"
                     /locus_tag="U1335_000772"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEM5231270.1"
                     /translation="MKTKVIVVIGPTAVGKTALGIDLAQRYNGEIISGDSQQVYRKLD
                     IGTAKASPEEQAAAVHHLIDVRDVTEGYSAYEFVAEAKALIADIKSRGKLPIIVGGTG
                     LYIQSLLEGYHLGGLVDQEQVLAYRAELDCLSDEDLETMAEQAGLMVEGNSRRRIIRG
                     LELKKFGKNLENTESDYEPIYICLTDDRQVLYDRINQRVDKMMAAGLLDEVSWLYQEH
                     PEAQAAMGIGYKEFFPYLAGQISLEEAIDKVKQNSRRFAKRQLTWFRNRMQVPFYSVG
                     EPDYKLQIFTAVEEFLDD"
     gene            8617..8787
                     /locus_tag="U1335_000773"
     CDS             8617..8787
                     /locus_tag="U1335_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003002781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3042 family protein"
                     /protein_id="HEM5231271.1"
                     /translation="MAKGFGKGFLTGVLSTVALAAGAVFTVHKTIIEPEEKKEAFIEE
                     NRKKAARRRVAH"
     gene            complement(8887..10053)
                     /locus_tag="U1335_000774"
     CDS             complement(8887..10053)
                     /locus_tag="U1335_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5231272.1"
                     /translation="MKKQSPFIIAGIVMLGVVMRAPFTALPAILTDVAAGLGVEVSSL
                     GILTSIPLIMFALCSSLAPRLAAKFGMEKLMALVLLVMVLGSGMRVLNLPALYIGTML
                     VGATIAFINVLLPSLVAANFPKKIGLYTTIYITLMGVAATVASMIAVPIVSSSSWEFF
                     ILLITGLVFMAFLIWLPNVRNNHRFASENQGNQKLSIWKNKAAIAFLIFGGLQSVLYY
                     TEITWLPTISQSVGFSKAEAGLMAGLFNMTAIPMSMIIPAVLSRQTKEMRRNIMLAIS
                     SVTLLGLVMMALIPTNLILWSALHIILSFSNAALFPYMMLSFTLKTSNSQATAQLSGM
                     VQTGGYLIAAFGPGLFGYSYPIFGNWMPLILALAIVTLAMMWTIVLIEKEDIIL"
     gene            10252..11400
                     /locus_tag="U1335_000775"
     CDS             10252..11400
                     /locus_tag="U1335_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine methyltransferase"
                     /protein_id="HEM5231273.1"
                     /translation="MTTSKFQLVGSLLRPANLGEFKRQIEAREDIKYPFYDDFDGYKE
                     TEASLIQKIVAEQKENGLDIVTDGEFGRSMWHLDFLWGLEGIERYIAEHGYPFKDHDG
                     QIFETRKDIGLRITAPLSAKNHHFIDIFKQVKELAGETVTKQTIFGPAHAFNELTIFN
                     GQVGPDQIYRTRDELKDGLIAAYKEFLDQYKEAGGQIVQFDDCLWELFDPANPVPFLP
                     QDDSEALAALADEFVAINNAVIDYGHEIGLTVWTHNCRGNYESRSAAGGTYEAIAEKF
                     LRDQKYDRFFLEWDDERAGDLKALESLRDKNVEVVLGLLSSKTSDLDDEERVYKLLEE
                     ASKIIPKERLYLSHQCGFASCDSGNELAIPQQWAKIKQGQEIAEKFWS"
     gene            complement(11471..12781)
                     /locus_tag="U1335_000776"
     CDS             complement(11471..12781)
                     /locus_tag="U1335_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HEM5231274.1"
                     /translation="MEILAILGVLLAVVAIIYWTTKNLHVIVAAPLASLIIILTNQMN
                     ILEVMLGKEQSYMAGLAGFLINNFAIFMLGSILARYMEASGATQTIANSILKVMGKDS
                     PYKGLLAITLIASILTYGGVSIFVVIFTLLPLSRPLFKELNINWALFPIPVFLGAGTY
                     TMTTLPGAPSIQNVIPTKVLGTSLTAAPIISLAASLTLLVFGLLYMAYCLKKSLANGE
                     TYTEEEDETAVVVADKTPNLFLSVLPLFSLIGTIFLMSKTPNVLAIGLLVSILISALI
                     FYPYLPNQKDILNAATTASIVPAFATSSTVAFGTVLTLSAGFAVIQEWIQQIPGSPLI
                     SLSVSIALVSGIIGSSSGAVGIASSNFLPAYLEMGINPELLHRVVVVASAILTVVPQS
                     GVMITFHNLSKLSMKRGLKYSFILVTVGHLLALLVILLLAPLLY"
     gene            complement(12803..13297)
                     /gene="folK"
                     /locus_tag="U1335_000777"
     CDS             complement(12803..13297)
                     /gene="folK"
                     /locus_tag="U1335_000777"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEM5231275.1"
                     /translation="MKHLAYLSIGGNMGNRQAYLQAALDKLASHPGCQLGLVSNIYET
                     PAWGKTDQADFLNLACQVYTDLSAQDFLSVCQNIEQELDRVRIEKWGQRTIDLDIIFW
                     DEQVIDEENLIVPHPYAHERAFVLLPLADIAADYRHPGLGQRVEVLVSNLGDTSDIKK
                     ISLD"
     gene            complement(13294..13656)
                     /gene="folB"
                     /locus_tag="U1335_000778"
     CDS             complement(13294..13656)
                     /gene="folB"
                     /locus_tag="U1335_000778"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEM5231276.1"
                     /translation="MDKISLNKCRFYGYHGAFKEEQVLGQIFTVDCDLFVDLTAASQT
                     DNLEDTVHYGMVFETIKAVVEGKPYILIEKVAGVICQEIFDQFPKVEKIRLAIYKENP
                     PIAGHYDSVGIELERERP"
     gene            complement(13649..14461)
                     /gene="folP"
                     /locus_tag="U1335_000779"
     CDS             complement(13649..14461)
                     /gene="folP"
                     /locus_tag="U1335_000779"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEM5231277.1"
                     /translation="MSIDQLAHQVTIMGILNVTPDSFSDGGHYNEVESALVQVEKLLA
                     EGATVIDVGGESTRPGATFVSEEDEIARVVPIIRAIKENYDCLVSVDTYKTGTARAAL
                     EAGADILNDVWAGLYDGDMLALAAEYKVPIILMHNQKEESYADVVGEVKNFLAERAQA
                     ALDAGVSANQIWLDPGFGFSKNVQHNLDLLQGLEQITALGYPVLFGISRKRVVDYLLG
                     GNSLPTDRDQATAALSAWAVQKGCKMVRVHNVAANRDIVKVWDQLTSGGHHG"
     gene            complement(14470..15024)
                     /gene="folE"
                     /locus_tag="U1335_000780"
                     /pseudo
     CDS             complement(14470..15024)
                     /gene="folE"
                     /locus_tag="U1335_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938082.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
     gene            15191..15673
                     /locus_tag="U1335_000781"
     CDS             15191..15673
                     /locus_tag="U1335_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase"
                     /protein_id="HEM5231278.1"
                     /translation="MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKL
                     EPGETPQACAIREVFEETGLTVTKHALKGVITFPDFTPNTDWYTYVFKITGFEGSLID
                     CIEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGDRLLDYSVDFYEE
                     "
     gene            complement(15984..16661)
                     /locus_tag="U1335_000782"
     CDS             complement(15984..16661)
                     /locus_tag="U1335_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4956 domain-containing protein"
                     /protein_id="HEM5231279.1"
                     /translation="MQLFNSIFSTANSSITLTQMAMVFAVSLSMGVLLAAVYKYKSNY
                     TKEFVITLSLMPALIAVIIALVNGNLGAGVAVAGTFSLIKFRSAAGSSKEMLAVLLAM
                     AIGLATGMGFLGLAVFMTVILSACILIFENISFAQVNQNRRHLLVTVPMNFDYDQFFE
                     KQFGKSCKQADLISLKYKKKKEALILEYQVLLDKKITDKHLVDTVLSASPLDVVLNKQ
                     MPKKKYL"
     gene            complement(16648..>17141)
                     /locus_tag="U1335_000783"
     CDS             complement(16648..>17141)
                     /locus_tag="U1335_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="polyphosphate polymerase domain-containing
                     protein"
                     /protein_id="HEM5231280.1"
                     /translation="QAFLEIKKKENKIGYKYRLTSNPVSVTNYIENGVIDSTIKDDKV
                     TSELEMLRERYGTIKPKMYIYYDRVSYKGIEDKKVRLTIDKNLLYRDYDVDAMEGKFG
                     KDLLDPTKVIMEVKVPEERPDWLVALLEKYQIEKQSFSKYGNAYKLAHNITGEEVSQH
                     AAV"
BASE COUNT         4972 a         3938 c         3486 g         4745 t
ORIGIN      
        1 ttttccaaga aaaatggagc agagggagga ctgaatttaa tcaatcaacc cttgctccaa
       61 ctatgcaaga ttatttttaa agcaatggag aaataatatt catcaaggca ccagctaatc
      121 gcttgtacca tggatatgta ttttcaaagc cgagtaaagt aatgcgttga gactgagcaa
      181 aggagtcttc aaagtccttg tgaatgtctg ccagaacttg cttatggtta taaacataga
      241 gaccgcattc aaagttgaga tagaaggatc ggaagtccat attgacagta ccaacggttg
      301 cctttttgtc atcgactaag actaccttag aatgcacaaa tcctggtgtg aactcgtaaa
      361 tttcaatgcc tgcttccaga taagttctga aatccgtccg agcgaccaag taggccgact
      421 gcttatcgta gatatgaggt aatagtatct tgactcgtac accgctcttg gctgcatagg
      481 tcagattgtc aatcatctca tcgtctaaga ctagataggg agtcataata taaatgtagt
      541 cagttgcaga ctgaatcata tccagataaa ctcgtttggc tacttcatca ttgtcaaagg
      601 gactttcacc ataagctagg aaatacccct ctcctgcaac cgtatctgat tcggattcct
      661 tatgagctcg gaggtaggcg aggtcgtcat tttcctttcg ctcatcgaaa ttccacattt
      721 gtaggaacat attcgtaaag ttggcaacag cctcgccttt gaccataatg gctgcatcct
      781 tccagtaacc aaatcgttct ttttggttaa tgtactcgtc tgcgatgttg accccgcctg
      841 tgaaggcaac cttgccgtca ataacagtaa ttttacggtg gtcacggttg ttctgaacgg
      901 ttgacagggc tgggataatt tgcgaaaaga ccttggcctt aataccgtaa gaacgtagag
      961 tcttgtagta attatagggg agcaaactga gggaattcat gccgtcgtac aaaaaccgca
     1021 cttccactcc ctgctctgct ttttccttga gaatggtcag gatagactcc cacatatagc
     1081 caaaatcgac aatgaaatac tccataaaga tgtactgctc tgcctttttc aactcctcta
     1141 agagtgcctc aaacttggcc tcccccgacg gaaaataaac cgcatctgta ttggtatgca
     1201 gaggatagcc gacgtactcg ctcatgtagt gagctagttt gagctgctcc ttatcctctc
     1261 ctgccaagcc cttcataacc ttttcagagg tgtgtccgta ctcccgcata accgctgcct
     1321 gtcgcttaaa agttcgacga tagcgttggg tttccaggtt ggactggagg ataaagtaaa
     1381 agagggcacc aaaaatcgga acaccaatga caaagataat ccaagtcaac ttaaaacttg
     1441 cgttcatggg ccggttaatg atggaaatgg ctacgattat agaaaaaagt tgtaataccg
     1501 tcaagatagc tgggacatag actgctagtg agccaaccac ccaaaatatc gcaaagactg
     1561 tcaataataa aagggcaaga actataaaaa cccgactata aataattttc cacaattttt
     1621 tcatactaca ctctcacgat gttttttccc attataccag attatagtca aatatcctac
     1681 taattatcgc agtagatttc tcgcagttct tacttgaaaa cagcacccct atctcctaca
     1741 tcataaaaca ccgacataga ccggtgtttt acttatatat attatctgtc aaaatttcta
     1801 cggtttaccg taacgtaaac ccatagcatt gatagcgaca ataaccgtcg atagactcat
     1861 gagcacggcc gccaataaag gatccaccat aatgcccatg cttggataaa ggattccagc
     1921 agctaaagga atggcaatga tgttgtatcc tgccccaaac cagagatttt gcctcatttt
     1981 gcggatggtt gtcttggcaa tgctcaacat atccaagact gctgatggat tggattgaac
     2041 caagaccacg tctgcagagt ggatggcaac agaagttcct gcgccaatgg caaagcctaa
     2101 atctgccgtc gctagagcag gcgaatcatt gaccccatcg ccgatgaaaa gaactgcccc
     2161 acgcgcctga tagtccttga ccagttttgc cttatcctct ggtttaagtt cagctcggta
     2221 atcctctatg cccaactgaa tggctacttt ttgtgcggta gctggattgt cacccgttaa
     2281 catcacagga ctaatcccct gcgctttcaa gcctgctaca aaatctttag catcttctct
     2341 tatctggtcg cccaaggcta caaatcccaa gaccacatga tcagtcacca aaaaactcaa
     2401 ggttagaccc aaatcaagat agggagcaat cacgtcctga tccactgaca aacctatttc
     2461 ctgcagacct ttgtaggaca taatttcata aatccttcca tccaagacgc ctcgaatccc
     2521 actaccaggg atattctcaa cccgttctgc ttgatagaaa agtggacctg ccgcctccac
     2581 aatcgaaagg gcaattgggt gggttgaaag aacttctaat gctgccattt tggccagcgc
     2641 atccgctccc tcaaccaaat cttggctgtg gcgaacttga aattttccgt cggtcaaggt
     2701 tccggtctta tccatcaagg caaaccgaat ctggttaacc tgttcaagag ctgttcggtt
     2761 ctgaaccaaa agaccatttt ttgaagaaat cgtggtcaaa cgcgccacaa caagagggat
     2821 ggctaaacca agggcatgcg gacaggcaat gacaaaaaca gaaactgcca tcatcaaggc
     2881 aaaggcaaga ttagccgtca tggtccaata aataaaggcc aaaatcccca taattaaagc
     2941 tgcatagaag agccaagagg ctacgcggtc agccatattt tcaagcttgg atttctggtt
     3001 ttgcgcttga cggaccattt cggtcacctc cgccaaaaag ctgtccttac caagactggt
     3061 cacttccatt tcaaagggcg tgttttgatt gagcgaacca ccgaataccc tatctcctgc
     3121 ctcttttttg acagctcgag attccccagt aatcatggat tcatcaatat gagcaacact
     3181 caaaatctta ccgtcagccg gaattttttc attttccttg actaagagga aatccccaat
     3241 ctgcaagtcc tctaccgcaa catctgtccc atccttgaga tgggcttttt tcggaatgag
     3301 agaggccaag tctttcaggg catcgcctgc tcccataacc gccttcatct caatgatatg
     3361 cccaatcagc ataatgacaa tcagcgtaga caactcaaac caaaagttca tgctttcttg
     3421 tcccaatagc gctaaaattg ttgcataaac ggagtaaaga taggaaacaa taatccccat
     3481 ggaaatcagg gtcatcattg caggtttttt agcttgcaac tcccctctag ctccgttaaa
     3541 gaaaggtgtt cctgagtaga agaagataat agaacctaat atcagctgga caagttcaac
     3601 acccggaaaa cgtaaaagag tgaaacctgc aattggagaa atggccagta ggggaatcat
     3661 gactgccact gcgactttga gttttgtatt catatccccc atgtgcatca tgtgcccacc
     3721 atgctccatc atgtcatggt catgcccttg gtgatgctga tgagcatcat gagtatgatg
     3781 agaatgatga ctgacgtcag agccccctac atgatgatgg tcgtgatgga cgtgatggtc
     3841 agaatgatga ttggcgtgaa ccccctcttc atgaggatgc tcctgctgat gagaatgatg
     3901 gctggtctga ccaacttcct cagaatgcat catatgttgg tgttcctgct cattttcttt
     3961 tgaatggttc ataagataac tcctatttct gtctacattt gtaatcgatt tacaattata
     4021 gtttacactt gtagtcaaaa aatgtcaacc gattagatca aaaaaaccta gaatggcatt
     4081 aatccatcta ggtcatatta tgtgttcact tttctttatt tcaaattaaa gaccgtactg
     4141 gccagataat cagccagtct cggaaaaaga gtatatagct tatgagcagc tgctagtgac
     4201 caaggcagat tgatgtctcg tttcttcgtc cccatagctg aaacaatctt cttggcaaca
     4261 tagtctggct gaagtaagaa agccttgaca ctttctcgat aagtaccatc tggatctgct
     4321 tggtcgaaaa agctggttgc gattggacct gggttaacag ttgtaactgt cacaccgtac
     4381 tgggctaatt ctaagcgaat ggtatttgaa aaacccatgg ccgcaaactt ggtcgccgaa
     4441 taaaccgatg acttgcttga agcaatcaaa cctgacatgg aaatgatatt gatcatctgc
     4501 ccactccgac ttgccttcat gcgcttgcct actaaacggc acatggtcat cagggcaaag
     4561 gtattgatgt caaacatagc ctgcacctgc tggctggaaa aattctcaaa atcatcgtaa
     4621 atggcatagc cagcattatt gactaaaata tcaatctgac caaactgact atccagttca
     4681 tcgaaaaatg ccgtcagagc tatttcatct cggatgtcta catcaaagac agcctttttt
     4741 tcatggtaag catagagctg ctcaattttt gccacatcac gacctagtaa aatcaaaaaa
     4801 tcatctttca gcaagggcac catttcctgt accaagccac cagaagcacc tgtgattaga
     4861 atggttctca tacttcgatt tcctctaaat ccttgacaat atgaacctgc tcgaaaatag
     4921 tacttgcatc tttccgtagt tgactaatat ccttggataa aaatcgtgga ctgatatgat
     4981 tgagtaagag ttgcttgaca ccagcatcct tggcaacctg agcggcttcc atattggtcg
     5041 aatgcccgtg cttgcgagca atcttctcat cgccttttcc gtaggtcgcc tcatgaacca
     5101 agacatcggc attgacagcc agacggacac tggcatgaca cttgcgtgta tcgcctagaa
     5161 tggtcactac tttaccaggc cgaggaggag aaatatagtc actcgcgata atttcagtcc
     5221 catcttctag cgtcacgttt tgaccatttt tgatttttcc aaagagggga ccaaatggta
     5281 cacctgccgc gcgcagagcc tctgcatcca gtgttccttc caaatctttt tggatgacac
     5341 gatagccgac acaaggaatg gtatggtcca acttttcagc gaataccgtg aatttgtccg
     5401 tttctaggac ctgaccgacc gtatcaacat caaactcatg aaaatgaatg cgataaggta
     5461 ggcgtgtccc tgatacttta agacttgcca agacaaagga acgaatgccc acaggtccat
     5521 aaatatcaat atctgtctgc tcctcgctag actggaaaga acggctagac aaaaaaccag
     5581 gcaagccaaa aatatggtct ccatgcaggt gagtgataaa aatttttgca accttacgtg
     5641 ggcggatagt tgtttccaaa atttgatttt gagttccttc gccacagtca aatagccaaa
     5701 cctgattgat ttcatccaag agtttcaagg ccaaactgga tacatttcga gccttggagg
     5761 gctgaccagc ccccgtacct aaaaattgaa tttgcattgt ttactttcta atgttttata
     5821 tataaaattg cagagcgacc cgaccagaca tagtaatact gaccagaaaa tccttccgcc
     5881 acttccacca cttcttcctg attaaagcct gaaatcttga ccaaaccttt cgctgtcgcc
     5941 acttgggtca aaaggtagtc tgtttcaact tcctctaact cggcgtcctc aaagggtttg
     6001 gcttttatga aaatcttgcc ctcctccaca aagacgacat agtggggaaa gacttgggcg
     6061 atttcaaaga gcaggctgtc tgtaacttcc tccacttgct ccgaaaaaac ttgagccaga
     6121 ccgtccgccg acacataggc aaatccgaaa gacttgcctg acaaattaag acggacaaag
     6181 ggcttgtcct cagcaaagct aggttctttt ggaaaaaggc tcagctgctg agaaagggtc
     6241 agatagtagt cggtcgcctc ttctgcacct tgtttctggt agatttccgc aaaataggca
     6301 ttgataaccg agggcggtgg cgtgataaaa tccagttttt gttggtcagt caaatcggct
     6361 aatttcttag ccagatagac cttgtccaga ctggtaaagc caccgtattt gattgccaaa
     6421 tcaagataat ccgtcataaa attcttccaa cttccattta ttgctggaag cgatatagcc
     6481 tgataccact tccacatcct cttcgtaggt ccgattttca atcagagcca gagtagctaa
     6541 atcatgcaac ttgtaggcct cggccagtgg gaccctgacc tcaaatcgtt caaacatggt
     6601 cttcatcttg gccaagacca tcatctgtat atggcctttg gcattgtcag ccttggctga
     6661 cagcatgaca tgaggaaact gactgggggt aaagctgtca tcggtcttgt ccaacttgtt
     6721 gtaaagggcc aggcgaggaa tgtccagcat atccaggtct tttagaatgt ccaagaccac
     6781 ctgctcctgc tcactgtggt tggggtcaga ggcgtcgatg acatggagca agagatccac
     6841 gttcatggac tcctccaagg tggacttgaa ggcggaaatc aactcggtcg gcaggtcctg
     6901 aatgaaacca accgtatcgg tcaaggtcac gttgaacttg tcagccaagt ttatctgctt
     6961 ggtcgtggca tcaagcgtag caaagagttc gtccgcctcg tactgtcgct tatccgtcat
     7021 ggcattcata atcgtggact tgccagcgtt ggtgtagcca atcaaaccaa ttttgaagac
     7081 acctgattgc agtcggcgtt cacggacagt cgctcggttt ttctccaccg ttttgagttg
     7141 gcgttcaatg tcgtgaatct ggttgcggat gcttcggcgg ttgagctcca actggctttc
     7201 acccggtcca cgagagccga taccccctgc ctgacggctg agcatgatcc cctgtccaac
     7261 caagcgtggc aacatgtact tgagctgggc cagatgaact tgtagttttc cttcgtggct
     7321 tcgagcccgc atggcaaaaa tatccaaaat caactgcata cggtcgataa ccttaacccc
     7381 cagaatttcc tccaaattga cattctgacg gggcgtcagt cggttattga caatgacggt
     7441 atcaatctca tcggcctcga ccatctgggc aatttcttct agtttccctg agccaacaaa
     7501 ggtcttgctg tcgtattttt ctcgtttttg agtgtagact cccttgacca gagcgccagc
     7561 agtcttagca agacttgcca actcctccat ggacatgtca aaattatctg tctgctgtag
     7621 ttccactcca accaggaggg cacgttcttg ttctttctgc gtttcaatca tctaaaaatt
     7681 cctccacggc ggtgaaaatc tgcaacttgt aatctggctc gcctactgaa taaaagggaa
     7741 cctgcatgcg atttctgaac caggtcaatt ggcgtttggc aaagcggcgg ctattttgct
     7801 tgaccttatc aattgcctct tctaggctga tttgacctgc taagtatggg aaaaactcct
     7861 tgtagccaat tcccatagcg gcttgagctt ctgggtgttc ttggtagagc cagctgactt
     7921 catccagtaa gcccgccgcc atcatcttat ccactcgctg attgatgcgg tcgtaaagaa
     7981 cctgtctgtc atccgtcagg caaatgtaaa taggctcata gtctgactct gtattttcta
     8041 agtttttgcc aaattttttc aattctaacc cacgaatgat tctccgtcgg ctgtttccct
     8101 cgaccatcaa acctgcctgc tctgccattg tttccaaatc ctcgtcagac aagcagtcga
     8161 gttccgcccg ataagcaagt acctgctcct ggtcaaccag cccgcccaga tggtagcctt
     8221 caagcaagct ctgaatgtaa agccctgtcc cacccacgat aataggcaac ttgccacgac
     8281 ttttaatgtc agcaatcagg gccttggctt ctgctacaaa ttcataagct gaatagccct
     8341 cggtcacatc tcggacatca atcaagtgat gaaccgcagc agcctgctct tcaggactag
     8401 cttttgccgt accaatatcc agtttgcgat agacctgctg gctatcaccg ctgataatct
     8461 ctccattgta gcgctgggcc aagtctatgc caagggcagt ttttcctacc gctgtcggtc
     8521 caatgaccac aataacttta gttttcatct ttttccttga aaatattttg ttttttcgct
     8581 aaaatctatt ataacacaag taaaggagaa ataactatgg ctaaaggttt tggtaaaggt
     8641 ttcttaacag gtgttctttc tacagttgct cttgcagcag gcgcagtctt cactgttcac
     8701 aaaacaatca ttgaaccaga agaaaagaaa gaagccttca ttgaggaaaa tcgtaaaaaa
     8761 gcagcacgtc gtcgtgtggc acattaaaaa gctggcaaat gtctagcttt ttttgtttga
     8821 caaaaaatcc cttagaagct ctgctatttc caaaaggcaa ttaacaagct ttctaagaga
     8881 tttcacttat aatataatat cttctttttc aatcaatacg atagtccaca tcatggcaag
     8941 tgtgacgata gccagagcaa gaatcaatgg catccagttt ccgaagattg gatagctata
     9001 accgaaaagg cctggtccaa atgctgcaat gagatagcca cctgtctgca ccattcctga
     9061 taactgggca gtagcctggc tgttgcttgt tttcaaagta aagctcaaca tcatataagg
     9121 gaagagggct gcatttgaaa aacttaaaat aatgtgaagc gctgaccaaa gaatgagatt
     9181 ggtcggaatc aatgccatca tgaccaaacc aagcaaggta acagatgaaa tagccagcat
     9241 gatatttcga cgcatttctt ttgtctgacg ggaaagaaca gctgggataa tcatagacat
     9301 gggaatagct gtcatattga agaggccagc cattagacct gcttctgcct tactaaagcc
     9361 aactgattga gaaatagttg gcaaccaggt aatctctgta tagtagagga ctgattgtag
     9421 tccaccaaat atcaaaaagg caatcgctgc tttatttttc cagatagata atttctggtt
     9481 tccttggttc tcacttgcaa atcgatggtt atttcttaca ttaggcaacc agattaggaa
     9541 agccataaac accaatcctg taattaatag aataaaaaat tcccaagaac tagaggatac
     9601 aattggaaca gcaatcatgg atgcaactgt tgccgccacc cccatgagag tgatataaat
     9661 cgtcgtatac agaccaattt tctttggaaa attagccgca accaaacttg gtagcaaaac
     9721 attaataaat gctattgtag caccaacaag cattgtacca atgtaaaggg ctggtaggtt
     9781 gagaactcgc attcctgaac ccagcaccat aaccagtaag actagggcca ttagtttttc
     9841 catgccaaac ttagccgcaa gacgcggtgc taaggatgaa cagagagcaa acatgatgag
     9901 cggaatagag gttaaaattc ctaatgaact cacttctact cccagtcctg ctgccacatc
     9961 tgtcaaaata gcaggtaaag ctgtaaaggg ggcacgcatc acgaccccta gcatgacgat
    10021 tcctgcaata ataaagggtg attgtttttt catttttctc ctaagtctcc taatgttcgg
    10081 atttcagcac tttcgattat accatagttg acaaatgata gaaagttatt tccgtctatt
    10141 ttttctagtt atagttttta actatggatt tgccatgaaa ataactattt ttcaaatgat
    10201 agcttatgag ttagaatagg ttcatcacta aaacgaaaga gagacacaca tatgacaact
    10261 tcaaaattcc aattagtcgg ttcacttctt cgaccagcaa acttaggaga atttaaacga
    10321 caaatcgaag ctcgtgaaga catcaaatac ccattctatg atgacttcga tggttacaaa
    10381 gaaactgaag cttcactcat ccaaaaaatt gttgcagaac aaaaagaaaa cggtttggat
    10441 attgtgacag atggagaatt tggtcgttca atgtggcacc tagattttct ctggggctta
    10501 gagggaatcg aacgctacat tgctgaacat ggctatccat ttaaagacca tgatggacag
    10561 atttttgaaa cacgtaagga cattggtttg cgtattactg ctccactttc tgcaaaaaat
    10621 caccatttca ttgatatttt caaacaagtg aaagaattag caggagaaac tgtaaccaaa
    10681 cagactattt tcggtccagc ccatgccttt aatgaattga caattttcaa tggacaagtt
    10741 ggaccagatc aaatctacag gactcgtgat gaattgaaag acgggctcat cgctgcctat
    10801 aaggaatttt tagaccagta caaggaagct ggtggacaaa tcgttcaatt tgatgactgc
    10861 ctttgggaat tattcgaccc tgctaaccct gtacctttct tgccacaaga cgattctgaa
    10921 gcattggctg ctttggctga cgagtttgtt gctatcaata atgctgttat tgattacggg
    10981 catgaaattg gcttgaccgt ctggacgcac aactgccgtg gtaactatga aagccgctct
    11041 gcagctggcg gaacttacga agctattgct gaaaaattcc tgcgtgacca aaaatacgat
    11101 cgattcttcc ttgagtggga tgatgaacgt gcaggtgatt taaaagcttt ggaaagcctg
    11161 cgtgacaaga atgtcgaagt cgttcttggt ctactttcaa gtaaaacttc tgatttggat
    11221 gatgaagaac gtgtttacaa attactcgag gaagcaagca agattattcc aaaagagcgc
    11281 ctctacttgt cacatcaatg tggattcgct tcatgtgatt caggtaatga attggccatc
    11341 ccgcaacagt gggcaaaaat taaacaaggt caagaaattg cagagaagtt ttggtcttaa
    11401 gccacttctt gttattcgtg cataaaagcc ccgccattcg gcagggcttt tatttgtttg
    11461 ttaatcaatc ctaatatagc aaaggtgcca acagtaaaat cacaagtaag gctaacaaat
    11521 gcccaactgt tactaggata aacgaatact tgagtccacg tttcatactt aatttcgata
    11581 gattgtggaa ggtaatcatc acgccagact gaggcacaac tgtcaagata gctgatgcaa
    11641 ctactactac acgatgcagc aactctggat taatccccat ttctaaatag gcaggaagga
    11701 aattacttga agcaatacct actgcaccag aagaggaacc gataatacca ctaaccaatg
    11761 ctatcgaaac agataaacta atcagcggcg atcctggtat ttgttgaatc cattcttgaa
    11821 tgactgcaaa acctgctgac aaggttaaca ccgtcccaaa tgctactgta ctagaagttg
    11881 caaaagcagg cactatagat gccgttgtcg cagcattcaa aatatctttt tgatttggca
    11941 aatatggata aaaaatcaag gctgaaatga gaattgaaac aagcaaaccg attgctagta
    12001 cattcggagt tttactcatt aggaaaatcg tcccaataag actgaataga ggcaagactg
    12061 ataaaaatag atttggtgtc ttatcagcta ccactactgc agtttcatcc tcttcttctg
    12121 tatacgtctc tccatttgct agacttttct tgaggcagta ggccatgtag agcaagccaa
    12181 atactaatag cgtcaagctg gctgccaaac tgataatggg ggccgcggtc aagctagttc
    12241 ccaaaacttt tgtcggaata acattctgga tggaaggtgc cccaggaaga gttgtcatcg
    12301 tataagtacc ggctcccaaa aagacaggaa ttggaaaaag ggcccagtta atattcaatt
    12361 ctttgaaaag tggtcgtgac aggggaagca aggtaaaaat aactacaaaa atactgacac
    12421 caccataggt cagaatggaa gcaatcaaag tgatggctaa caagccctta tagggactat
    12481 cctttcccat tactttcaaa atgctattgg caatcgtctg cgtggctcca cttgcctcca
    12541 tataacgtgc caagatagac cccaacataa agatggcaaa attattaatc aaaaaacctg
    12601 ctaagcccgc catataagac tgctctttgc ctagcataac ctccaaaata ttcatctggt
    12661 tggtcaagat gatgatcaaa ctagccaatg gcgctgcaac aatgacatgt agattctttg
    12721 tagtccaata aataatggcc acaacggcca gtaaaactcc taaaattgct aaaatttcca
    12781 tagttctcct tattttccct tcctagtcaa gggagatttt tttaatgtct gacgtatctc
    12841 ctaaattact tactagcact tctacccttt gtccaagacc aggatgtcga taatctgctg
    12901 caatatcagc cagtggtaaa agaacaaatg ccctctcatg tgcataagga tgtggtacga
    12961 tgagattttc ttcgtctatc acttgctcat cccaaaaaat aatatccaaa tcaatggtcc
    13021 gttgacccca tttttcaatc cgtactcggt ccaactcttg ttcgatgttc tggcaaacgc
    13081 ttagaaaatc ctgagcagac aaatcagtat acacttgaca ggctagattg aggaaatcag
    13141 cctgatctgt cttgccccaa gctggtgttt cataaatgtt ggaaactaag ccaagctggc
    13201 aacctggatg actggctaat ttgtctagag ctgcctgtaa ataggcttgc cgattgccca
    13261 tgttccctcc gatactgaga taggctagat gcttcatggt cgttcacgct ccaattcaat
    13321 tccgaccgaa tcatagtgtc cagcaatggg tggattttcc ttgtaaatag ccaagcgaat
    13381 cttctccacc tttggaaatt gatcaaaaat ctcctgacaa ataacacctg ctaccttttc
    13441 tataaggatg tagggcttgc cttccacaac tgctttaatg gtttcaaaga ccataccata
    13501 gtgaactgtg tcttctaaat tgtcagtttg tgaagctgct gtcaggtcaa caaacaaatc
    13561 acagtcaact gtgaaaattt gaccaagaac ttgttcttct ttgaaggctc catggtagcc
    13621 gtaaaagcga catttattga gagaaatctt atccatgatg acctccagaa gtcaattggt
    13681 cccaaacttt aacgatgtca cggttggcag cgacattatg aacacggacc attttgcagc
    13741 ctttttggac tgcccaggca gacaaggctg ccgttgcttg atcgcggtct gtcggtaggc
    13801 tattgccccc aagcagataa tccaccacgc gcttacgaga tattccaaat agaacgggat
    13861 aaccaagagc agtaatctgt tccaaacctt gtaagagatc taagttatgt tggacattct
    13921 ttgaaaagcc aaatcctgga tccaaccaaa tctggttcgc ggaaacacca gcatcaagtg
    13981 ctgcttgggc acgctcggct agaaagtttt tgacctctcc aacaacatcc gcatagcttt
    14041 cttctttctg gttgtgcatg agaataattg gtaccttgta ctccgcagcc agggccaaca
    14101 tatctccatc ataaagtcct gcccagacat catttaaaat atctgcgcct gcttccaagg
    14161 ctgcgcgtgc tgtgcctgtt ttataggtat cgacgctgac aagacagtca tagttttctt
    14221 tgatagcgcg gataatcgga accacacgag caatctcgtc ttcttcagac acaaaggttg
    14281 cacctggacg agtggattct ccaccgacat caatgacggt agcaccctca gccaacaact
    14341 tttctacttg taccaaggca gactccacct cattatagtg accaccatct gaaaatgaat
    14401 cgggtgtcac attgagaatc cccataatgg ttacttgatg ggctaattga tcaattgaca
    14461 tagaacctcc tatttattgt ggatcatgga taagagttca cggcgcaaga tggcatcgtc
    14521 cttgtatttg ccaaaggcaa ctgtggtcac tgtcttacta cctggcttgc gaataccacg
    14581 catactcatg cacatgtgct ctgcttctac catgacaaaa acgccttctg gatctaaagc
    14641 atcttgaagg gcgtgtgcaa cctgatgggt caaacgttcc tgtaactgag gacggcggct
    14701 tgccacctct actgcacgcg ccaatttgct aagacctgtc acacgcccct tgctaggaat
    14761 ataggctaca tgggcaatgc cataaaaggg taccaaatgg tgttcacaca tagaatgaaa
    14821 gggaatatcc ttgaccaaga ccacttcctc atgtccctct gaaaaaacag ctgtaaattg
    14881 gtcttttggg tcctcttcta agccgttaaa catctcaaga tacatcttag cgacccgctt
    14941 aggtgtatct aataaacctt cacgattcgg gtcctcaccc aataattgat aaattgtttg
    15001 ttcgatttgt tcttattttg acatagtaca tcctaaatag tttgatgttc ttattatacc
    15061 ctaaaaactg ttttcagaaa agggctttca acatgctaat cccaaaactg tcccctacca
    15121 gagcaccaag caggtgtccc tactcccacc tttgtggtat aataggataa atcaactaca
    15181 aggagcctct atgaccaaga aacctgtcca actcgctacg atttgttaca ttgataatgg
    15241 taaggaattt cttctccttc atcgaaacaa gaaagaaaac gatgtccatc aaggaaaatg
    15301 gattggagtt ggtggcaaac tggaacctgg cgaaacacca caggcttgcg ctattcgtga
    15361 agtctttgag gaaactgggc ttactgtaac aaagcatgct ctaaaaggag tgataacctt
    15421 cccagacttt actccaaata cagactggta cacctatgtc tttaagataa cgggttttga
    15481 aggaagtctt attgactgca ttgaaggtga tttagaatgg gttccttatg accaagtgct
    15541 ctccaaacca acctgggaag gggacagaca ctttcaagaa tggctattag aggacaaacc
    15601 atttttttcc gcttgcttcc gctatgatgg ggacagactg cttgattata gtgttgattt
    15661 ttatgaagaa taagctaata aaaaacgaaa aaggctgggc tcaagcccag caccgcttct
    15721 caacgttagt gtcaatatct catcgcagtg gttgattggc agatttgttc gtgttttaca
    15781 ctccaaatct gaccattacg actgttgcga acaaagttcg ctctatttcc aacctcaaaa
    15841 ggttcactga accttttgag ctatgcgggg gtgggagtga aacagtctgg ggatagactg
    15901 tttcagctca acaattggaa ataaggactt gttgacgaac tcttctaaga atggtcgagt
    15961 tctttctcac tccctctttg atattacaaa tacttcttct tcggcatttg cttgttcaat
    16021 acgacatcca agggactggc tgacaatact gtatctacca agtgtttatc tgtaatcttc
    16081 ttatcgagga gaacttgata ttctaaaatc agcgcttctt ttttcttctt gtatttgagt
    16141 gaaatcaagt cggcttgctt gcaagattta ccaaattgtt tttcaaaaaa ttggtcgtag
    16201 tcaaaattca ttggcactgt taccaagaga tgacgacgat tttgattgac ttgagcaaag
    16261 ctgatatttt caaaaatcaa gatacaggca gataggatga ccgtcataaa gacagccaaa
    16321 cctaggaagc ccatcccagt cgctagacca atagccatcg ctaagaggac tgcaagcatt
    16381 tccttcgaag aacctgccgc tgaacggaat ttaataagac tgaaagtccc tgctaccgca
    16441 acacctgctc ctaaatttcc atttaccaat gctatgatta ctgcaatcaa tgccggcatt
    16501 agacttagtg tgatgacaaa ttcctttgta taattggatt tatatttata aacagctgct
    16561 aagagcaccc ccatagacag actgactgca aagaccatcg ccatctgtgt taaggtgata
    16621 ctgctattgg cagttgaaaa tatactgtta aacagctgca tgttgactta cttcctctcc
    16681 agtgatgttg tgggcaagct tataggcatt gccatacttt gaaaatgatt gtttttcgat
    16741 ctggtatttt tcgagcaggg ctaccaacca gtctggtcgt tcttctggaa cttttacttc
    16801 catgatgact tttgttggat ccaaaaggtc cttaccaaat ttgccctcca tggcatctac
    16861 atcgtaatct cgataaagta agttcttatc gattgtgaga cgaacttttt tgtcttcgat
    16921 tcctttatag gatacgcgat cgtagtagat atacatcttc ggcttaatag taccgtagcg
    16981 ttctctcaac atttcgagtt ctgaggttac cttatcatcc ttgattgtag aatcaatcac
    17041 tccattttcg atataatttg ttacagaaac agggtttgag gttaaacggt atttatagcc
    17101 aattttattt tcttttttct tgatttcaag aaaagcttga c
//
LOCUS       DASGAC010000031        17037 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.031, whole genome shotgun sequence.
ACCESSION   DASGAC010000031 DASGAC010000000
VERSION     DASGAC010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 17037)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17037)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17037
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.031"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            82..1158
                     /locus_tag="U1335_000784"
     CDS             82..1158
                     /locus_tag="U1335_000784"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="M50 family metallopeptidase"
                     /protein_id="HEM5231281.1"
                     /translation="MKKVWNWFVIGVSVLCGFASAMYSTYGMAQLLPENDSFHGLWVF
                     GLGYAWFLGSFYLTLILHELGHAFFGWLTGFDLVALGLGNRLLVKTDQGWKWKKTVIV
                     QGAAAQYIGVKRDENDPRAILVFAGGPIVHLSLILISVLIGFLTGHWSLPLSQILLNL
                     ALFILNANPSGMADGAKIQELRTHPEYSRLVYQSLRHTSQVMVDPTAANLSDFVMDLP
                     ILPGHLPQIHYLNWTEVLIFKGEYQEAQERLEKVIVASDNDYIVKMAKLVLLEVYLLQ
                     GLNEEARELGQDRQVKSLLKYPMGNHQVIAALYHQRITKDSKALKKSLNQAKKMLPNS
                     PLLADEQDYYSKLLIEVELESQVP"
     gene            1235..1606
                     /locus_tag="U1335_000785"
     CDS             1235..1606
                     /locus_tag="U1335_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231282.1"
                     /translation="MKKFVYAFLVLAYVTIAYLSVYVLPHYYFGAIIGAAGASLGTSF
                     KQFKEVKAFFDKALSAYFKWDKKKASSLLLVFLGIFLFVSLVLEFNWQYGLAFVVAIS
                     YAMLWNVLHIQFLRKYYFKNA"
     gene            complement(1625..2962)
                     /locus_tag="U1335_000786"
     CDS             complement(1625..2962)
                     /locus_tag="U1335_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM5231283.1"
                     /translation="MNDLTKGKPIAVILQFAIPLLIGSFFQLAYNFADSMIVGHTLGK
                     DAFASVGSTASLIFLIIGFAQGVTNGLTIISAQRFGAGDLEGLKKSFVHGLFYASLIS
                     LLLTVLALAFLKPILVLMQTPVSIIDHSHAFLTAMFGGLTFTIFYNFLSSALRSLGNS
                     KTPLLALVIACLINIGLDFFFILVMNWGVFGAGFATILAQACSVLFLIFYIIHKVPHY
                     HIGLADLKLDRGNLKKHAQLAFPMGFQASIIAIGAMTLQFMVNQLGTDAIAAQAIALR
                     TDQLAMLPMVNLGLAIATFTAQNYGAKLYDRIREGVRHSLLLSISWAIVFAVILILGN
                     RFFSGLFLPNASQTVLDLALIYYIINGSCYWIVASLFILRSFIQGLGKGFIPTLAGFG
                     ELIFRAAVAIIGMQYFGFYGTAAANPAAWIGSIIVLIPSSILFMKKLKAGQSI"
     gene            complement(3283..3948)
                     /locus_tag="U1335_000787"
     CDS             complement(3283..3948)
                     /locus_tag="U1335_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEM5231284.1"
                     /translation="MPNYTIGILGLGVFGTTIAKTLHNYDCNIIAIDNHEQRINHLEP
                     ILTRGIVGDITDRSLLRAAGIGNCDAVVVATGENLESSVLAVMHSKVLGVPMVIAKVK
                     GTTAKEVLLRVGADKVISPERETGISLAKQLLHRDTTSLFELDGNVSIVEFHPPVKWI
                     GKTLGELKLRQHYKLNIIGYRSGKNQELNIQLTPDYVFKSDELILAVTDHNTVDHFEE
                     LTN"
     gene            complement(3960..5309)
                     /locus_tag="U1335_000788"
     CDS             complement(3960..5309)
                     /locus_tag="U1335_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HEM5231285.1"
                     /translation="MSPFRIKLSPSQRIIISFLFVILTGSILLSLPISQISTSTASYW
                     DHLFTSVSMVCVTGLFTKAVAETYSTFGQIICMILIQIGGLSLIGFIGLFALRGGRKM
                     NFINMATLQEALNRSDTKYFRNFLKSAFGFTLAVEAFGALLLSFHFVPEFGWARGLFT
                     SIFVAISAFCNAGFDNFGATSIMRYVDNPLINITLASLIIMGGLGFSVWFDLQTQIGQ
                     KRSLRKLGFHTKIVLGLTAIILTLGTLTTLLTEWNNPSTIGQLSFGHKLLASFFQTVT
                     MRTAGFASIDYTKAEPITLLLYIFQMMLGGAPGGTAGGIKITAFLTLVLYARSEILGL
                     PHTNFMGRTIDNLSIRKAFATFSVFLLMFIIGLFALALTDDRQPLLFLMFEVMSALAT
                     VGVTANQTPSLTMAGQAVIMALMFFGRIGPLSILASLSVRKLSKTESLQYAKSSMLV"
     gene            complement(5728..6267)
                     /locus_tag="U1335_000789"
     CDS             complement(5728..6267)
                     /locus_tag="U1335_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gx transporter family protein"
                     /protein_id="HEM5231286.1"
                     /translation="MNSKRQTLNFITMLAAQAVVISLIERLITPPFAFAPGAKLGLGN
                     LISLIAIFTLPTKDSLKVVALRLLISTFLGGTFSTFLYGFAGTTLSYVGMLSAKQLGP
                     NRVSPIGISILGGMLHNLGQLLVFATIARSFYVLNYLPILAFTGILSGLLVGLAATYL
                     LQKVGPLRHYHQQVLAEWK"
     gene            6450..8342
                     /locus_tag="U1335_000790"
     CDS             6450..8342
                     /locus_tag="U1335_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM5231287.1"
                     /translation="MTKNIVIVGAGYAGIAAARLLGKTFKKDQDVTVTLIDKNSFHTY
                     MTELHEVAAGRVEANAIKYDLQRIFKKYPKVQLVTDKVVEIDYDKKQVVAEHQTLDFD
                     YLLLAMGGEANDFGVKGVKEHGFTLWSIEAAERLHDHMIDACYQAMREHDEAKRRALL
                     TFTVIGAGFTGIEMIGELIDWVPILAREFKLDPKEFSLKVVEAMPNILAMVTEKEQVK
                     ARKYLEKKGVELVLGDGVASVQEDSLTLSSGRQIPTYTSIWTAGVQANTDASEFGIEK
                     ARAGRLVANEFMEAKGKENVYVAGDLVYFEESEGKPTPQIVQAAEQTGHTAASNIIAT
                     IKGGEKHSYKGKYDGFMVSIGARYGVAFLMDKYHMSGFMAMAVKHMVNLLYFFTIRSF
                     FYMGSYVRHEFFDIQNKRNIFGGHTSGKGNLLWSVPMRVLYGSVWLYEGIKKAFGLFG
                     TTSWFGDQVVFPFPWLADPVSGASAAEAVSSASQAATAAAEAAEPIFGLSYAYGEAPM
                     AVLDKMPDWFASIMEFMMPNQEVALFMQKFMTVAEIGIGLALIAGAFVWIVSAATVAL
                     VVMFSLSGMFYWVNIWFIPAAISLMNGAGRAFGLDYWIMPWLGRFLDKKIYGKPKHIY
                     RIKDKK"
     gene            8387..8935
                     /locus_tag="U1335_000791"
                     /pseudo
     CDS             8387..8935
                     /locus_tag="U1335_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736269.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
     gene            complement(8977..9405)
                     /locus_tag="U1335_000792"
     CDS             complement(8977..9405)
                     /locus_tag="U1335_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NusG domain II-containing protein"
                     /protein_id="HEM5231288.1"
                     /translation="MTIKSILKQLKLFDYILIGFTLVLSFLPAIFTYTHLTTDTNEAK
                     TIAYVRINGEVVDQFELSKDTPHQEKTYYPNDGQYNIIEVDGERIRVKEDNSPDQIAV
                     MTSWISQPGQLSVCLPHNLLIEIKSVGGENTDEEELILPL"
     gene            complement(9458..9805)
                     /locus_tag="U1335_000793"
     CDS             complement(9458..9805)
                     /locus_tag="U1335_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231289.1"
                     /translation="MNVNKPKLILTLIVLSYTTICSLYIHSYLTGDNPPIFILLFTML
                     PILNSDWQTSSPEANAVQEAIHLYHKPLLWFLFAGFALTFSIVFFAGKIQSLHAGFWG
                     IFALLLFIGQLKK"
     gene            complement(9795..10139)
                     /locus_tag="U1335_000794"
     CDS             complement(9795..10139)
                     /locus_tag="U1335_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5231290.1"
                     /translation="MNKPFSPKQTCQFFVLFYGLFSAFFIYSYMVNEPINGSFLLTLP
                     TVQIIKSYQTAEEKRYFIIQAFFALFAMTLTYSVGIWLGHVKPHILILPAGFAVAILY
                     RLYFKKEKTDER"
     gene            complement(10152..11234)
                     /locus_tag="U1335_000795"
     CDS             complement(10152..11234)
                     /locus_tag="U1335_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3278 domain-containing protein"
                     /protein_id="HEM5231291.1"
                     /translation="MKKETFQDKLIKRFYGIAGPLDEFRQKEAFRLGNTCFILLFWGT
                     MALTLLAIALYKRFPQVVAYGYPTALFLSTLSASMYMTSKMRHSQVDSLDVEELTSKE
                     QKQLKGASIKFALYFTTVMYIWVVIFGAWMEGLNPFDHLFDLRKFLAACLGGIFTGIA
                     LEIMLRKRMKKAEKLTVSSAISKEEPKWIQNMIRHFYGIRGPLDEYRRTKADEIGGLA
                     FVYHFYFLALGNAVAYFLAIRFPVEVANYYPMIIALFSFILLGIVNMQTLHANLPQYD
                     LDELSPEERQGQTLNPLVWGLGVALLSSLFAGLADLFSLQLPLLDSIFHVKSLLFGGM
                     MGLFASLALSALAYLQKLEAETTKKK"
     gene            complement(11248..11448)
                     /locus_tag="U1335_000796"
     CDS             complement(11248..11448)
                     /locus_tag="U1335_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231292.1"
                     /translation="MKKNIRQALISTLIFIPLFVLFQLWGNSGADILHTISQVKFWLQ
                     LLITGAIYFLGLAYLPLIFRRK"
     gene            complement(11463..11996)
                     /locus_tag="U1335_000797"
     CDS             complement(11463..11996)
                     /locus_tag="U1335_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3278 domain-containing protein"
                     /protein_id="HEM5231293.1"
                     /translation="MKDIFTKILNQATKDFYSISGPMDEMRQQESYRFSNTIVMIVFP
                     ILVIGNTIALLIALRQPEKVGFLLPLTNILIIGFTQALASHLALKNGISQSYEDEIDV
                     AKLNKSLLKNSRAIFFGAFLASTTAPAFYKEWSVFLEELTDPFLLLGRLIVAGAITFI
                     HYYYCKKQLQKKILANK"
     gene            complement(12007..12195)
                     /locus_tag="U1335_000798"
     CDS             complement(12007..12195)
                     /locus_tag="U1335_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5231294.1"
                     /translation="MNRVKDYRLLLGISQLDLAKAIGVSRQTINMIENNKYNPSLDLC
                     INLAKALQTDLNSLFWNE"
     gene            12463..13413
                     /gene="rsmH"
                     /locus_tag="U1335_000799"
     CDS             12463..13413
                     /gene="rsmH"
                     /locus_tag="U1335_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016466808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEM5231295.1"
                     /translation="MSKEFNHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQ
                     LTDGGHLYAFDQDQTAIDHAQIRLADYIEKGQVTFIKDNFRNLKTRLAELGVTEIDGI
                     CYDLGVSSPQLDERERGFSYKQDAPLDMRMNRDGQLTAYDVVNTYDYHDLVRIFFKYG
                     EDKFSKQIARKIEQVRAVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEV
                     NDELGAADESIQQAIDLLALEGRISVITFHSLEDRLTKQLFKEASTIDVPKGLPFIPD
                     DLKAPLELVNRKPILPSQEELEANNRAHSAKLRVAKKVHK"
     gene            13424..13747
                     /gene="ftsL"
                     /locus_tag="U1335_000800"
     CDS             13424..13747
                     /gene="ftsL"
                     /locus_tag="U1335_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HEM5231296.1"
                     /translation="MLQEKRREATMRVIGDKIRTFTRVEKAFYSSIVLSGLALAIGII
                     FMQTRLLQLQSGMAKVNQDISQKQIEINDAKQAVNELTRSARLMEIAEKAGLTFNNDN
                     IGVAE"
     gene            13747..15996
                     /locus_tag="U1335_000801"
     CDS             13747..15996
                     /locus_tag="U1335_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEM5231297.1"
                     /translation="MPRRNNKLLRYVLKKRYIPSKNRRRVGQSLLLLTVFVFFLFLIN
                     FAYIIGTDSKFGVDLSERADAVHQREVTVQAKRGTIYDRTGIPIAEDSTTYTVYAIID
                     TEYVSELKKVLYVQSSQFSKVAEIFKKHLGMETDYVMEQLNQPKLKQVYFGTLGKNIS
                     YSTMSSIQEEMKAAGIEGIAFDASPGRMYSNGNFASIFVGLANPVENKDGSYSLQGVS
                     GLEYYLNDILAGQDGKVIYEKDSQGRVLPGTEKVETETVNGQDVYTTISADLQRSLET
                     NMNTFFDNAKGRYANATLVSAKTGEILATTQRPSYDSDTKEGLGQEGLLERSLLYQEA
                     FEPGSTMKVLTVASAIDNGTFDPNAYYTNNEYVIADAKINDWTLNAGYSAVTLNYAQG
                     FSLSSNVGMTLLQQQMGDEKWLNYLAKFRFGYPTRFGMGDEAPGMVPVDNIVSIAMSS
                     FGQGISANQAQMLRSFTAIANNGIMLEPKFISALYNPNTDTARVSSKEEMGNPVSEQA
                     ADDTLRYMINVGTDPVYGTLYSHDLQGPAIQVDGYDIAVKSGSAEIAGEDGQGYIKGA
                     YINSVVAMIPAEDPEFIMYVTIRQPEVLNVLSWRDIVSPTLKEAMLLKDNLNLDSPAP
                     ALTRVANETEYQLPDLIGKAPGESAEELRRQLVQPVILGNGAEIKKVSVEKGSNVIAN
                     QQVLLLTNNFEEMPDLYAITKENMDIFAEWTGIEVTYKGTGSKVVDQSVEVGTALNKT
                     EKITITLGD"
     gene            15998..16996
                     /locus_tag="U1335_000802"
     CDS             15998..16996
                     /locus_tag="U1335_000802"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEM5231298.1"
                     /translation="MQFALMSGLVAFLATVLLIPRFITFYQAKRIEGQQMHEDVKQHQ
                     FKAGTPTMGGTVFLVVAILVSLLFATAFQLLTGGVLAILFILALYGVVGFLDDFLKIF
                     RKINEGLNPKQKLALQILGGIVFYFVHVRGAGSGELNVFGHMVHLGVLYFPFVLFWLV
                     GFSNAVNLTDGIDGLASISVVISLLAYSVIAFNEQKFDILLVCVTMIGGLLGFFVYNR
                     KPAKIFMGDVGSLALGGMLATISIALRQEWTLLLIGLVYVIETSSVMLQVSYFKYTKK
                     RFGEGRRIFRMTPFHHHLELGGLTGKAEKWSEWKVDFFLWSVGLIMSLITLAILYL"
BASE COUNT         4981 a         3151 c         4033 g         4872 t
ORIGIN      
        1 gaataacgtt gctaaaaaaa acaaggaaag actaggtttt ctagtctttt tctgttatac
       61 tatatgaaaa ggaggtttgc tatgaaaaaa gtgtggaatt ggtttgttat aggtgtttct
      121 gttctttgtg gttttgcaag tgccatgtat tcgacttatg ggatggctca gctgttacca
      181 gaaaatgatt ccttccatgg attgtgggtg tttggtctag gttatgcctg gtttctaggt
      241 agtttttacc tgaccctcat tctccatgaa ctggggcatg ctttctttgg ttggttgaca
      301 ggttttgact tggtggcact tggcttgggc aatcgcttgt tggtcaagac tgaccagggc
      361 tggaaatgga agaaaaccgt gattgtgcaa ggagcagcgg ctcagtatat cggagtcaaa
      421 agagacgaga atgaccctcg ggcgattctg gtgtttgcag gtggtccgat tgtccatctc
      481 agtctcatcc ttatttctgt tttgattggg ttcttgacag ggcattggag tctgcccctg
      541 tcgcaaatcc tcctcaatct agccttgttt atcctcaacg ccaacccttc tggtatggcg
      601 gatggtgcta agattcagga gttgcgtact catcctgagt atagccgatt ggtttatcaa
      661 tcgcttagac acacctctca agtcatggtg gatccaactg ctgcgaattt aagtgatttt
      721 gtcatggact tgccaatctt gcctggtcat ttgccacaga ttcactatct taactggacg
      781 gaagtactga ttttcaaagg ggagtatcaa gaagcccaag aacgcttgga aaaagtgata
      841 gtggcatcgg acaatgatta tatcgtgaag atggcaaaac ttgtactgtt ggaagtttat
      901 ctcttgcaag gattgaatga agaggcaagg gaattaggcc aagacaggca agtcaagtcc
      961 ctgctcaaat accctatggg aaatcaccaa gtcattgcgg ctctctacca ccagcgaatt
     1021 acgaaagata gcaaagcctt gaaaaaatct ctaaatcagg ctaaaaaaat gctgcccaac
     1081 agcccgcttt tggctgatga acaggattat tatagcaagc tcttgataga agttgagtta
     1141 gaaagtcaag tgccatagta gattattttg acttgtgtta caagaaaaaa catgttaaaa
     1201 taggtacaga agcaaataga tagggaggtt ggtcatgaaa aaatttgtat atgccttctt
     1261 ggtgcttgcc tatgttacga tcgcttattt gtcggtctat gtccttccac actattattt
     1321 tggtgcaatt ataggagcgg caggagcaag tcttggtact agtttcaaac agttcaagga
     1381 agtgaaagct ttttttgata aagccttgtc ggcttatttt aagtgggata agaaaaaggc
     1441 gagtagttta ttattggtct ttctgggaat attccttttt gttagccttg tgttggaatt
     1501 taattggcaa tatggcttag cttttgtagt ggcgattagc tatgctatgc tttggaatgt
     1561 ccttcatatc caattcctac gaaaatacta ttttaaaaac gcatgagagt ttcatgcgtt
     1621 ttctttatat actttgtcca gcttttaatt ttttcataaa gaggatggaa cttggaatca
     1681 ggacgatgat gcttccgatc caggcggcgg ggttagcagc ggcggttcca tagaagccga
     1741 aatactgcat gccgatgatg gcgactgctg ctcggaaaat caattctcca aagcctgcta
     1801 gtgttgggat aaagcccttg ccaagtccct gaataaagct acgaagaata aagagggaag
     1861 caacaatcca gtaacaagat ccgttaatga tgtagtaaat gagagccaag tctagtacag
     1921 tttgactagc atttggcaga aagagaccag agaagaagcg attgcccaag atgagaatga
     1981 ccgcaaatac aatggcccaa gaaatgctga ggagtaatga gtggcgcact ccttctcgaa
     2041 tacggtcata gagcttggcg ccgtagttct gagcagtaaa ggttgcgata gccaatccca
     2101 gattgaccat gggcagcata gccaactggt cagtacgaag ggcaatggcc tgggcggcga
     2161 tggcgtctgt ccctagttgg ttgaccataa actgcaaggt catggctccg atggcgataa
     2221 tactggcttg aaatcccatt ggaaaagcaa gctgggcatg tttcttgaga ttacctctat
     2281 ccaattttaa atcagctagt ccgatatgat agtgaggtac cttgtggata atgtaaaaaa
     2341 taagaaagag gaccgaacag gcttgggcaa ggatagttgc aaagccagct ccgaaaacgc
     2401 cccagttcat aactaagata aagaaaaaat ccagaccgat attgattaaa caagcgataa
     2461 ctagagcaag tagaggtgtt ttagagtttc cgagactgcg tagggctgaa gacaggaaat
     2521 tataaaaaat agtaaaggtc aatcctccaa acatggccgt tagaaaggca tgggagtggt
     2581 cgatgatact cacaggcgtt tgcattaaga ccaagatagg tttcaaaaaa gctaaggcta
     2641 agactgttag taaaaggctg atgagggaag cgtagaagag tccgtggaca aaagattttt
     2701 taagcccctc taagtcgcca gctccaaagc gttgggcaga aataatggtt aatccattgg
     2761 taacaccttg ggcaaaaccg atgattaaaa aaatcaggct ggctgtcgaa ccgacacttg
     2821 caaaggcgtc ctttcccaaa gtatgtccca caatcatgga atcagcaaaa ttataggcca
     2881 gttgaaaaaa agatccaatc aataagggaa tagcgaattg taagatgact gcaatcggct
     2941 ttcctttggt taaatcattc ataacatctc cttttgacag atgataagcc cactagataa
     3001 atgatagtct agtaggcttt ctagggataa aatatttctc ctgaaaacgg agtatagggc
     3061 gtaaatttgt tatttatact cttcgaaaat caaaatcaga cgttgttgac ttgatttgat
     3121 gagtgaaagg ctccagtgga gcctttcagc ctgttacctt gaaacgaaat agtaacaggg
     3181 ttctatctgc gtaagtagta acgaactacg ttcgccctat ctccaacctc caaaggttcc
     3241 ccaaaccttt ggagctagtc tgtttttgat tttcattgag tattaatttg tcagttcttc
     3301 aaaatgatcg acagtgttat ggtctgttac tgctaagatg agttcgtcag atttgaagac
     3361 atagtcagga gtcagttgga tgtttaattc ctgatttttg ccacttcggt aaccgataat
     3421 attgagttta tagtgttggc ggagttttaa ttcgccgagt gttttgccaa tccattttac
     3481 tggcgggtga aactcaacaa tggaaacatt accgtcaagc tcaaaaaggc tggttgtgtc
     3541 gcggtggagt aattgttttg ctagggaaat acctgtttcg cgttcgggag aaatgacctt
     3601 gtcagcacca acacggagaa ggacttcttt cgcagttgtt cctttgactt tggcaatgac
     3661 cataggaaca cctaggacct tgctatgcat aacagcaaga acactggatt ccaagttttc
     3721 gccagtagct acaacaacag catcgcagtt accgattcct gctgcacgta ggagcgagcg
     3781 atcggtgatg tctccgacaa taccgcgcgt gagaataggt tctagatgat tgatacgttg
     3841 ctcatgatta tcaatagcaa tgatattgca atcgtaattg tgtaatgttt ttgcaatggt
     3901 agtaccaaaa actcccaggc cgagaattcc gatagtatag tttggcatga tttctccttt
     3961 taaacgagca tagatgattt tgcgtattga agactttcgg ttttagataa ttttcgaaca
     4021 gaaaggcttg cgagaataga aagtggaccg atacggccga agaacatgag cgccataatg
     4081 actgcttgac cggccatggt tagacttggt gtctgattgg cagtaacacc tacagtggct
     4141 agtgctgaca tgacctcgaa cattaaaaat agaagtggtt gtcggtcatc tgttaaggca
     4201 agtgcgaaga gtcctatgat aaacataagc aggaagacgg agaatgtcgc aaaagctttg
     4261 cggatgctga ggttatcaat ggttcgtccc ataaagttgg tatgagggag gccgagaatt
     4321 tcactacgag catagagtac taaggttagg aaggcggtta ttttaatacc gccggctgtt
     4381 ccacctgggg ccccgccaag catcatctga aagatataga gcaagagggt gattggttca
     4441 gctttcgtgt agtcgatact ggcaaaacca gcggttcgca tggtaaccgt ctggaaaaag
     4501 ctggctaata atttatgacc aaatgatagt tgcccgatag tagaagggtt gttccattcg
     4561 gtgagtaagg ttgtcagagt tccgagggtt agtataatgg ctgttaggcc tagaacaatc
     4621 tttgtatgga accctagttt tcgtaggcta cgtttttgcc cgatttgtgt ctgaaggtca
     4681 aaccaaaccg agaatccaag acctcccata ataatgagac tggctaatgt tatgttgatt
     4741 agaggattat ccacatagcg catgatgcta gttgcgccaa aattatcaaa accagcatta
     4801 caaaaggctg atatagctac gaaaatcgag gtaaataaac ctctcgccca tccaaattca
     4861 ggtacaaaat gaaaggatag taagagggct ccaaaggctt cgaccgccaa ggtaaaacca
     4921 aaagctgatt tgaggaagtt acgaaaatat tttgtgtcag atcggtttag agcttcttgt
     4981 aaggtcgcca tattgatgaa gttcatttta cgaccaccgc gtagagcgaa gagaccgata
     5041 aatcctatca agctcaaacc accaatttgg attagtatca tacagataat ctgtccaaaa
     5101 gtagaatagg tttcagcaac ggctttggta aatagccctg tcacacaaac catggagaca
     5161 gatgtgaaga gatgatccca ataacttgct gtagaggtgc taatttgtga gatgggaaga
     5221 cttagtaaaa ttgatccagt cagaatcacg aataagaaac tgataatgat tcgctgactg
     5281 ggagaaagtt tgatcctaaa tggtgacata attctacctt ttctcaaaaa aataaaagat
     5341 gaagatattg tagcacaaaa gaaagaaaat gtacgactaa aacacgcaaa gaacctgatt
     5401 ttttctcttc ttgaaagctt cattgttttt tattaccatg gattttataa gtggtgttta
     5461 catgaggtgg ctcaggtggc tcattttatt tgtgacacca ggattatggg gaaattatta
     5521 tgggtaatga aaaagtagtg cggactataa aaagaagagg ctggacaaca agcccaggac
     5581 cacttctcag agttcgtgtc aacatctcag cgcagtggtt gattggcaga tttgttcgtg
     5641 ttttgcactc caaatctggc ctaatcaact gtgcgggggt gggaagacga actctttttg
     5701 aactagtcga gttctttccc actcccttta tttccattct gctaagactt gttgatgata
     5761 gtgacgtaaa ggtccgacct tttggaggag gtaggtagca gccagtccga ccaataagcc
     5821 tgataaaatt cctgtaaaag cgaggattgg caggtagttc agtacataga aagaacgggc
     5881 gatggtagca aaaacaagaa gctgaccaag attgtgcaac atcccaccca gaatagaaat
     5941 tccaatagga ctgacacggt ttggaccgag ctgcttggca gagagcattc ctacataact
     6001 caaagtagtt ccggcaaagc catagaggaa tgtggaaaag gtgcctccca gaaaggttga
     6061 gatgagcaag cgtagtgcga caacctttag gctatccttt gtagggaggg taaagatagc
     6121 gatcaagcta attaaatttc ccagtcctag cttggcacct ggagcaaagg caaatggggg
     6181 ggtgatgagt cgttcaatca aagaaatgac aactgcctga gctgccagca tcgtaataaa
     6241 gttaagtgtt tgacgtttag aattcatggg tatagagaaa aaactctttc tagtcgatta
     6301 tctattttac tatcatactt gtttttgttc actatggcaa gttttgtttg tgtatattac
     6361 taattattga aattcgcttg tcaactatct tggaatacga tataatggga acatgtaatt
     6421 tgttttgatt ttcacaagga ggaaacattg tgacgaaaaa tattgtgatt gtcggtgctg
     6481 gttatgcggg gattgcagca gctcgattgc taggaaaaac ttttaaaaag gatcaagatg
     6541 taacagttac cttgattgat aagaactctt tccataccta tatgacagag ttgcatgaag
     6601 ttgcggctgg gcgtgtggaa gccaatgcaa tcaagtatga ccttcaacgt atcttcaaaa
     6661 aatatccaaa ggttcaattg gtaacagaca aggttgttga gattgactac gataagaaac
     6721 aagtagttgc ggaacaccaa actctagatt ttgattacct gctccttgca atgggtggtg
     6781 aggctaatga ctttggtgtg aaaggtgtta aagaacacgg ttttacactt tggtctatcg
     6841 aagcagcaga acgtttgcat gaccacatga ttgacgcttg ctatcaggcc atgcgtgagc
     6901 atgatgaagc caaacgtcgc gctcttttaa cctttaccgt tatcggtgct ggcttcacag
     6961 gtattgagat gatcggtgag ttgattgact gggtaccaat tttggcgcgt gagttcaagt
     7021 tagatccaaa agaattctct ctcaaggttg tcgaagcaat gccaaatatc ttggctatgg
     7081 ttactgaaaa agagcaagtc aaggcacgta aataccttga gaaaaaaggt gttgaattgg
     7141 tacttggcga tggtgtagca agtgtacaag aagatagctt gacactttca tcaggtcgtc
     7201 aaattcctac ctatacctct atttggacag ctggtgttca agccaataca gacgcaagtg
     7261 aatttggtat tgaaaaagca cgtgcaggtc gtttggtagc caatgagttc atggaagcga
     7321 aaggcaagga aaatgtctat gtagctggcg acttggttta ctttgaagaa tcagaaggaa
     7381 aaccaactcc acagattgta caagcagctg aacagacagg ccatactgcg gcaagcaata
     7441 ttattgcaac aatcaagggt ggcgaaaaac atagctacaa aggtaaatat gatgggttta
     7501 tggtatctat tggagcacgc tacggtgtag ccttcttgat ggacaaatac cacatgtcag
     7561 gctttatggc aatggctgtc aaacacatgg taaacctact ctacttcttt actatccgta
     7621 gtttcttcta catgggttct tatgttcgtc atgaattctt tgacattcag aataagcgaa
     7681 acatttttgg cggtcatact tcaggcaaag gaaatcttct ctggtctgtg ccaatgcgtg
     7741 tcctttatgg ttcagtatgg ctctacgaag gtatcaagaa agcctttggt ctatttggaa
     7801 caacatcatg gtttggggat caagttgtct tcccattccc ttggttagct gatccagtat
     7861 ctggtgcatc tgctgctgag gcggtttcaa gtgcctcaca agcggcaact gctgcggcag
     7921 aagcagctga accaattttt ggtttgagct atgcctatgg tgaagcaccg atggctgttt
     7981 tggacaaaat gcctgattgg tttgcttcta tcatggaatt tatgatgcca aaccaagaag
     8041 ttgctctctt tatgcaaaaa ttcatgacag tagcagaaat cggtattggt ctggctttga
     8101 ttgctggtgc ctttgtatgg attgtatctg ctgcaaccgt tgctttggta gttatgttca
     8161 gcctgtcagg catgttctac tgggtaaata tttggttcat cccagcagct atttctctta
     8221 tgaatggtgc gggtagagcc ttcggtctag actattggat tatgccgtgg ttgggtcgtt
     8281 tcctagacaa gaagatttat ggaaagccca agcatattta ccgtatcaag gataaaaaat
     8341 aaaggaaata tagaaagtta gtggtacatc agatttggaa tacctaacct ttggacctat
     8401 tccgctttcg agaatgccac taggtgaagt tttctctgga gtaaccatgg gatttggcat
     8461 cttctttctt gctgtattta ttcagcaacc agatttgcta ctgaccagcc aagtgagcgg
     8521 ccagtggatg atcttgcaat tctcttggac aagaataata gaaattattt tcatgtccat
     8581 tcctttggta accttgattg ccaatatcat gttggccaac aatacctgtg atttagaaga
     8641 agatattcgc aaccatcgtt atactctggt ttactatatt ggcaagaaaa atgctcttaa
     8701 attgtatttt gtcttggcaa gtttaccatg gttgctgtgg ataatctact gtctgactgg
     8761 attcttacca atctgggcac tggccggttt aatcggtgtt tggcctgcct ataagagtct
     8821 agaaacattt ttgaaaaagc aagtcaaacg ggaaaccttt atcgaggcag taaagagttt
     8881 tgtactcttt gcgctgctat atgtggtgat acttgcttta gcccttattt tctaaaaagg
     8941 aaagacacag tcgttcatca gactgtgtct tctttcttat agtggcaaaa taagctcttc
     9001 ttcgtcagtg ttttccccgc cgacagattt gatttcaatc aagagattat ggggcagaca
     9061 gacggagagc tgacccggct ggctaatcca actggtcata acggcaattt ggtcggggct
     9121 attgtcttcc ttgactcgaa tgcgttcgcc atcaacttca atgatgttgt attgcccatc
     9181 attggggtag taggtttttt cttgatgtgg tgtgtccttt gataattcaa attggtcgac
     9241 cacctcacca ttgatgcgga cataggcaat tgtttttgcc tcatttgtat ctgttgtcag
     9301 atgtgtgtag gtaaaaattg ctggaagaaa ggataaaact agggtgaatc cgattaagat
     9361 ataatcaaat agtttgagtt gtttgagaat ggatttgata gtcatatgta gtctatttta
     9421 tagaaaaaat cctactttgt aaaatgttgg atgcagacta ctttttcaat tgtccaataa
     9481 agagcaggag agcaaatatt ccccaaaatc cagcatggag tgactgaatt ttcccagcga
     9541 aaaatacaat ggagaaagtt agggcaaaac ctgcaaagag aaaccagagc agtggtttat
     9601 gataaagatg gatagcttct tggacagcat ttgcttctgg gctgctagtc tgccagtcac
     9661 tattcaagat tggaagcata gtgaacagta agataaagat tggtggattg tccccagtca
     9721 ggtagctatg tatatacagg ctacaaattg ttgtatagga gagaacaatc aaagtgagta
     9781 taagtttcgg tttgttaacg ttcatctgtt ttctcctttt tgaaatacaa tcgataaaga
     9841 atagccacag caaatccagc aggaaggatg aggatatgtg gtttgacatg tcctagccaa
     9901 atgcccacgg aataagtcaa ggtcatggca aatagggcaa agaaggcttg aatgataaag
     9961 tagcgttttt cttctgctgt ttgataggat ttgataatct gaacggtcgg taaggtaagt
    10021 aagaatgaac cgttaatcgg ctcattgacc atgtaagagt agatgaagaa ggcagaaaat
    10081 aatccataaa atagaacaaa aaattgacag gtttgcttgg gagagaaggg tttattcatg
    10141 atgggagctc cttatttttt cttagtagtt tctgcttcca gtttttgcag ataggcaagg
    10201 gcagacaggg ctagactggc aaagaggccc atcatgccac cgaagaggag ggattttacg
    10261 tggaagatgg aatccagtag gggaagctgg aggctaaaga ggtctgccag cccagcaaag
    10321 aggctagata gcagggcaac tcccagtccc caaactagtg gattgagggt ctgtccttgt
    10381 ctttcctcag ggctaagctc atccaagtca tattggggca ggttagcatg gagggtctgc
    10441 atattgacga tacctagcaa gataaagcta aagagagcaa tgatcattgg ataatagttg
    10501 gcaacctcca caggaaagcg gatagctagg aagtaggcga cagcatttcc aagagcaagg
    10561 aagtagaagt gatagacaaa agctagtccc ccaatctcat ctgcctttgt ccgtcggtac
    10621 tcgtctaaag gaccacggat accatagaag tgccgtatca tgttttggat ccacttgggt
    10681 tcttctttgg aaatagcaga gctgacagtt agtttttctg cctttttcat gcgtttgcgt
    10741 aacatgattt caagagcaat gcctgtgaaa ataccaccta gacaggctgc tagaaatttt
    10801 cggaggtcaa ataggtggtc gaaaggattg agtccctcca tccaggcccc aaaaataacc
    10861 acccaaatgt acataacggt agtgaaatag agggcgaatt tgatacttgc tcccttgagc
    10921 tgcttctgtt ccttactagt cagttcttct acatctaaac tgtccacttg gctgtgacgc
    10981 atcttggatg tcatatacat actggcggaa agagtggata ggaatagagc cgttgggtag
    11041 ccataggcaa cgacttgtgg gaagcgtttg tataaggcaa ttgccagtag ggtaagagcc
    11101 atggtgcccc aaaagagcag gataaagcag gtattgccta gtcggaaggc ttctttttgg
    11161 cgaaattcat ccaagggccc tgcgataccg taaaatcgtt tgattaattt atcttgaaag
    11221 gtttcttttt tcatacgata ctcctattta cttacgacga aaaatgagtg gtaggtaggc
    11281 tagtcctaag aagtagattg ccccagtaat cagcagttgt agccagaatt tgacttggct
    11341 gatggtatgc aagatgtctg ctccgctatt gccccaaagc tgaaagagga cgaagagcgg
    11401 gataaatata agagtagaga taagagcttg acgtatattc tttttcatgg tgtttcttcc
    11461 ttttatttgt ttgcgagaat tttcttttgt aactgcttct tacaatagta gtaatggatg
    11521 aaggtgatag ctcctgcgac aattaaccga cctagtagga ggaacgggtc tgttagttct
    11581 tcaagaaata cagaccattc tttatagaaa gcaggggcag tcgtggaagc caggaaggcc
    11641 ccgaaaaata tagcacgact attctttaaa agggatttat tgagtttggc gacatcaatt
    11701 tcatcctcat agctttgact aatgccattt ttcaaggcaa ggtgggaagc taaggcttgc
    11761 gtgaaaccaa tgatcagtat attggttagg gggagcagaa agccaacttt ttcaggttgt
    11821 cgtaaggcga taagaagtgc aattgtattt cctattacca ggataggaaa tacaatcatg
    11881 acaatggtgt tactgaaacg atagctttct tgctgccgca tttcatccat gggtccgctg
    11941 atagaataaa aatccttggt tgcttgattg agaatttttg taaatatatc tttcatgata
    12001 aactccttat tcattccaaa agagactatt aagatcagtc tgtaaagctt tggctaggtt
    12061 gatacagagg tctagcgagg gattgtactt gttgttttca atcatgttga tggtctgcct
    12121 ggatacgccg atggccttgg ccagatccag ctgggaaatc cctagcagta ggcggtaatc
    12181 tttgacacgg ttcatgggtt ctcctttcgt gtaaaatata tgcgacactc tattgtaaag
    12241 agagaggata gactagctat ccttaggcac gatgtcaatt atatgcgaca gttggttgta
    12301 aaaaaatgtg ggagacctcc ctgttgatgt caactatatg tgacatgttt ctttactgtt
    12361 agtatatacc tgttcatata agttgtcaac tatatttgac atattttttg taaaaagttt
    12421 gcaacaactt tttgtattgt tttgtggtac aatagaaaag atatgagcaa ggaatttaat
    12481 cacacaactg ttctcttgca tgagacagtc gatatgttag acatcaaacc aaatggaatt
    12541 tatgtagatg caacgctggg gggagcaggg catagtgagt atctgctcag tcagttgacg
    12601 gatggtgggc atctttatgc ctttgaccag gatcagacgg ccattgacca tgcccaaatc
    12661 cgcttggcag actacattga aaaaggacaa gtgaccttta tcaaggacaa ttttcgcaat
    12721 ctcaagactc gcttggcgga gctaggtgta acagagattg atgggatttg ttatgattta
    12781 ggagtatcta gtccacagtt agacgaacga gagcgaggtt tttcctataa gcaggacgca
    12841 ccattggaca tgcggatgaa tcgagatggt cagttgacgg catatgatgt cgtcaatacc
    12901 tatgactacc atgatttggt gcggattttc ttcaaatatg gtgaggataa attttccaag
    12961 cagattgctc gtaagattga acaggtgcgt gcggtcaagc cgattgaaac gacgacagag
    13021 ttggcagaaa ttatcaagtc tgctaagccg gctaaggaac tcaagaagaa ggggcatcct
    13081 gctaagcaga ttttccaagc tattcggatt gaggtcaacg atgagttggg agcagcagat
    13141 gaatctatcc agcaggccat tgacttgctg gctctggaag gacgaatttc agtcattact
    13201 ttccattcct tagaagatcg tctgaccaaa caactcttta aggaagcaag tacgattgat
    13261 gttccaaaag gtttgccatt tattccagac gacttgaagg cgccacttga attggtcaat
    13321 cgtaagccta tcttacctag tcaagaagaa ttagaggcaa ataatcgcgc gcattcagcc
    13381 aaactgcgtg tagctaagaa agtacataaa taggagagag tctatgttgc aagaaaaacg
    13441 tagagaagcc actatgcggg ttatcggtga taaaattaga accttcacac gtgtagaaaa
    13501 agccttctat tcaagcatcg tattatctgg actagccctt gcgataggaa ttatctttat
    13561 gcaaacgcgg cttttgcaac ttcaatctgg catggccaaa gtcaatcaag atattagcca
    13621 aaaacagatt gaaattaacg atgcaaagca agctgtcaat gaattgacac gttcagctcg
    13681 cttgatggaa attgctgaaa aagctggatt aacttttaat aatgacaata ttggagtagc
    13741 cgaataatgc ccagaagaaa taataaactc ttgcggtatg tcttgaaaaa acgatatatt
    13801 ccgtccaaaa atcgtcgaag agtaggacag agcctacttc ttttgacggt tttcgtcttt
    13861 tttctctttt taatcaactt tgcctatatt atcggcactg atagtaaatt tggggtggat
    13921 ttgtcagaga gagctgatgc ggtacaccag cgtgaagtca ccgttcaagc taaacggggg
    13981 acgatatacg atcgtacagg aattcctatt gcagaagatt caacgaccta tacagtctat
    14041 gccatcattg acacagaata tgtgtcagaa ctgaaaaaag ttttgtatgt gcagtcttct
    14101 cagttcagca aagtagcaga aatctttaaa aagcatctcg gaatggagac agattatgtt
    14161 atggagcagc tgaatcaacc gaaactgaag caggtgtact ttgggacctt aggtaagaat
    14221 atctcctata gtacaatgtc gtcaatccaa gaagagatga aggcggcagg tattgaaggg
    14281 attgcctttg acgctagtcc aggacggatg tattcgaatg gaaattttgc ttcaattttt
    14341 gtcgggttag ctaatccggt tgaaaacaag gatggtagtt atagtttaca gggtgtgagt
    14401 ggtttagaat attatctgaa tgatattctg gctggtcaag acggaaaggt tatctacgag
    14461 aaagatagtc aaggtcgtgt cctacctggg acagagaagg ttgaaacgga gacagtaaac
    14521 gggcaggatg tctatacgac aatttcagcc gatctgcaac gttctcttga aaccaatatg
    14581 aataccttct ttgataacgc caaagggcga tatgcgaatg caactttggt ttcagccaag
    14641 acgggtgaaa tactggcgac gacccaaagg ccaagctatg attcagatac caaagaaggt
    14701 ctgggacaag aaggcctgct agagcggtcg ctcttatatc aagaggcctt tgagcctggt
    14761 tcaacaatga aggtgctaac agtagcgtca gctatcgata atggaacctt tgatccaaat
    14821 gcgtattata ccaataatga gtacgttatt gcagacgcga aaatcaatga ctggaccctc
    14881 aatgcaggtt attcagctgt gactctcaat tatgcgcaag gcttctccct atccagtaac
    14941 gttgggatga ccttattgca gcaacagatg ggagatgaaa aatggctaaa ttacctcgct
    15001 aaattccgct ttggataccc aacgcgtttt ggtatggggg acgaggcgcc aggaatggta
    15061 ccagtggata acattgtttc tatcgccatg tcatcgtttg gtcaggggat ttctgcaaac
    15121 caagcacaga tgcttcgtag ttttaccgcc attgcgaaca atggtattat gctagagcct
    15181 aaattcatct cagctcttta taatcctaat acagatacag ctagagtttc ttcgaaagaa
    15241 gaaatgggaa atccagtttc tgaacaagct gccgacgata cacttcgcta tatgattaat
    15301 gtcggtactg accctgttta tggtacgctc tactcacatg atttacaggg gcctgcaatt
    15361 caggttgacg gctatgatat tgcagtcaaa tcaggttcgg cggaaattgc cggtgaagat
    15421 ggtcaagggt acattaaagg tgcctacatc aactctgtag tagccatgat ccctgctgag
    15481 gaccctgaat ttatcatgta tgtgaccatt cgccaaccgg aagtattaaa tgtcctgtct
    15541 tggcgtgaca ttgtcagtcc tacattgaaa gaagcgatgc tgttgaaaga caatttgaat
    15601 ctggattcac ctgcgccagc attgacccgg gttgctaatg agacagagta tcaattgcca
    15661 gacctcattg gtaaggcacc aggcgagtcg gctgaggaac ttcgccgtca attagttcaa
    15721 ccagttattc ttggaaacgg tgctgaaatt aaaaaagttt cagtcgaaaa aggaagtaac
    15781 gtaatcgcca accaacaggt tctactcttg acaaataatt tcgaagaaat gccagacctg
    15841 tacgcaatca ccaaagagaa tatggatata tttgctgaat ggactggtat tgaagtgacc
    15901 tataaaggaa cgggttcaaa agtcgtcgac caaagtgtag aggttggtac cgctttgaat
    15961 aaaaccgaga aaataacaat aaccttagga gactaacatg caattcgcac ttatgtcggg
    16021 attggtagct tttctagcaa ccgttctctt aatcccacga tttattacat tttatcaagc
    16081 caaacgcatc gaggggcaac agatgcacga agatgtgaaa caacatcagt ttaaggcagg
    16141 tacaccaaca atggggggaa cagtttttct cgttgttgcg attcttgtca gcttgttgtt
    16201 tgcaacggcc tttcaactgt tgacgggagg tgtccttgcc atcctcttca tccttgccct
    16261 ttatggtgta gtaggatttt tggatgactt tttaaaaatt ttccgtaaaa taaatgaagg
    16321 tcttaatcct aaacaaaagc ttgctctaca aattttagga ggtattgtct tctactttgt
    16381 acacgtaaga ggagcaggta gcggagaatt gaatgtattt ggtcacatgg tacatttggg
    16441 agttctttat ttcccatttg ttctgttctg gctggtcggt ttttcaaatg cagttaattt
    16501 gacagatggt attgatggat tggcttctat ctcagttgtt atcagccttc tagcttactc
    16561 tgttatcgcc ttcaatgagc aaaaattcga tattcttcta gtttgtgtga ccatgattgg
    16621 aggcttgctc ggtttctttg tttataaccg taaaccagcg aagattttca tgggggatgt
    16681 gggaagcttg gctctcggcg gtatgttggc aactatttcg attgccctcc gtcaggaatg
    16741 gactctcctc cttatcggct tggtctatgt cattgaaacg tcctctgtta tgttgcaagt
    16801 ttcatatttt aaatacacca aaaaacgctt tggagaaggt cgtcgtatct tccgtatgac
    16861 tccttttcat caccatttgg agcttggagg tttgaccgga aaagctgaaa aatggagcga
    16921 gtggaaagtt gactttttcc tctggtcagt cggtctcatc atgagcttga ttaccctagc
    16981 tattctttat ctataaaatg tcagaaacag cagaaatgct gtttttttac cttgaca
//
LOCUS       DASGAC010000032        16832 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.032, whole genome shotgun sequence.
ACCESSION   DASGAC010000032 DASGAC010000000
VERSION     DASGAC010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16832)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16832)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16832
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.032"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            30..1100
                     /gene="xerS"
                     /locus_tag="U1335_000803"
     CDS             30..1100
                     /gene="xerS"
                     /locus_tag="U1335_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002268833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerS"
                     /protein_id="HEM5231299.1"
                     /translation="MRRELLLEKIEQLKEIMPWYVLEYYQSKLAVPYSFTTLYEYLKE
                     YRRFFEWLQDSDLLSVERIADIPLDVLEHLTKKDMESFILYLRERPLLNANTTQNGVS
                     QTTINRTLSALSSLFKYLTEEVENGQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
                     LFLGDETMEFLDYVDKEYQVKLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLD
                     LRDVNLNMMIIEVTRKGGKRDSVNVAGFAKPYLEAYMGIRQQRYKAEKTDTAFFLSEY
                     RGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHAN
                     TQVTDLYTHIVNDEQKNALDQL"
     gene            complement(1171..2679)
                     /locus_tag="U1335_000804"
     CDS             complement(1171..2679)
                     /locus_tag="U1335_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HEM5231300.1"
                     /translation="MSHHHVLQNGSDIRGIAIATDEYAVNLTPLAIKEVVRGLIHWLT
                     QKPELAQAYQVGQLKIGIGRDSRLSGPDLVAAFTEEAVRLGIQLIDFGMATTPALFMS
                     TQYPQFKCHAGVMVTASHLPYYFNGIKIFSENGGAEHEDIDFILSHSEDLPASTLGSV
                     TTADLIMPYSQDLVGKIRTACGGQEKPLANLNIIVDAGNGAGGFFAEKVLAELGADTT
                     GSQFLDPDGTFPNHVPNPDNKEAMESIRQAVLKQGVDLGIIFDTDVDRAALVTKSGQI
                     LNRNNLIAVLSQIVLAEHPGTSIVTNSPTTEHLKVFIESLGGKQIRYISGYRNVINRA
                     ILANQEGVDCQLAIETSGHAAFKENYFLDDGTYVAAKILMLLPKLQAEGKSLDDLIAQ
                     LKQPLETQEVRFKLEVADYRALGEQVIADLRQTSIEGFAFNPENEEGVRFDLTQPYGD
                     GWLLLRMSLHEPLLVLQVENDQTGYIPAVLKTLSAFLDQYPAVNQEKLKALI"
     gene            complement(2756..3697)
                     /locus_tag="U1335_000805"
     CDS             complement(2756..3697)
                     /locus_tag="U1335_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM5231301.1"
                     /translation="MIAKFIREYRSFYFSYIVLATSFILLFFLYQLPTEFLQNALLLS
                     LTLLILLTVGLFWKFRNRMRALEDYVHEEALALLNKPVDLVYLNLIEAEKEATREQLL
                     VYKSREEDLQAMVKMWSHQMKVPLAALSLMSQTDNLNQQDVDHQLLRLDNYMANLLNY
                     LKLTNHTSDFRFEQVEVREVVVDLVKKYRNQFLQKEISVHIDGNWSLKTDKKWLAFAL
                     SQIIDNALKYNKTGGKVAIELNEGISISDTGIGILAEDIPRLFDEGFTGFNGREHQKA
                     TGFGLYLTKRVLDQLELAISVESRVDVGTTVTITKVQ"
     gene            complement(3694..4359)
                     /locus_tag="U1335_000806"
     CDS             complement(3694..4359)
                     /locus_tag="U1335_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012961975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5231302.1"
                     /translation="MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVTE
                     IKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFISSSDDEMNAVMAMNMGGDDFVSK
                     PFSLGILDAKIGAFLRRVNQFSKSSDLSIDQFQLSLDGRFSNESEQVQLSPTETKILS
                     ALLERQGQIVSKDELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGY
                     LVK"
     gene            complement(4401..4667)
                     /locus_tag="U1335_000807"
     CDS             complement(4401..4667)
                     /locus_tag="U1335_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM5231303.1"
                     /translation="MSYKVILSAKAQKQIRKMDKTAASLILRYLYKHIDGCDNPRQYG
                     KALTANRSGQWRYRIGNYRVIVSIEDDKLIVTALEVGHRKEIYK"
     gene            complement(4657..4896)
                     /locus_tag="U1335_000808"
     CDS             complement(4657..4896)
                     /locus_tag="U1335_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HEM5231304.1"
                     /translation="MAAITLKVSEQDKLFMQAMAKFEGVSLSELIRTKTLEALEDEYD
                     ARVADIAWAEYQEDLANGIEPITLEQMAEELGIEL"
     gene            complement(4989..6959)
                     /locus_tag="U1335_000809"
     CDS             complement(4989..6959)
                     /locus_tag="U1335_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEM5231305.1"
                     /translation="MFYLKLAGQNIRKSMGVFAPFVLASLVLFTLICSMFLLMLSPVM
                     KTMGSGAISIGLGVVVLTIFSVIMEIYSFNFLMKQRAREFGLYNMLGMNKKKVALIAS
                     LELMMIFLLVVVLGSVLAGVFSNVLYLIFVNLTHYSDLHFGIAPLAFVMTAFLFAGFF
                     FLLELLAIRTIGKTSPLILFRASEKGEKEPKGNVLLAALGVVGLGVGYYLSLSSKAVG
                     LDVIYRFFIAVLFVIAGTYLFYISFMTWYLKTRRKNKRYFYTPEYFITTSQMIFRMKQ
                     HATGLANITLLAVMAFVTIATTTSLYTGMSSMTGALYPKETSITYKVSNRSQGEMAFQ
                     QSVLSHFPEKANDSLSYLTYQAGLVYDGGEEIVISPETISNPDFSKMAFTYFITQDDF
                     RKLGNDLPELAANQVVFMRPSEKPSLKKLVLGDQTFENVANLDQVIFPDITNTLNAAV
                     MVVSDDTVLNTVREYYESNNPQGYLVSLDYRVFTDLTDEEVLSLGEQSGEIYEILDEN
                     GEYLGNVMQRTDFNNLLMGFTGGFLFTGFLLGISFLLGAALIIYYKQYSEGYEDKKSY
                     KILQEVGMSAAAVKKTINAQTLTVFFMPLVMATLHFVIALVMLKQMLLSFGVTSSLMI
                     YTVSGITLLAVVFIYFVIYKWTSRTYYRIIER"
     gene            complement(6960..7712)
                     /locus_tag="U1335_000810"
     CDS             complement(6960..7712)
                     /locus_tag="U1335_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017650232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231306.1"
                     /translation="MLLEINHLEKVYRTRFSKEETRALQDVDFKVEEGEFIAIMGESG
                     SGKTTLLNILATLDKPTRGSVILNNQDITKIKESKLADFRLRNLGFVFQDFNLLDTLS
                     IQDNIFLPLVLARTSHEEMENRLKVLAPKLRIQDLLKKRPFELSGGQKQRVAIARSLI
                     TQPQIVLADEPTAALDYRNSEDLLNLFEEINRDGQTILMVTHSANAASHAKRVLFIKD
                     GRIFHQLYKAGKSNQDFAKEISLNMSALLGGE"
     gene            complement(7729..8112)
                     /locus_tag="U1335_000811"
     CDS             complement(7729..8112)
                     /locus_tag="U1335_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NisI/SpaI family lantibiotic immunity
                     lipoprotein"
                     /protein_id="HEM5231307.1"
                     /translation="MKKKVFGLLALGSIMLTACSSSSAGLSFDEGYQTFHYKGKDYAV
                     SKQEVAEDSIRGTEAKFMEWPVVKEESSVKETVSLNNLYTTSNKEWAIGVQGGYYKVD
                     LEDNIAESDRIDYQAVLDQVDLDSE"
     gene            complement(8125..8265)
                     /locus_tag="U1335_000812"
     CDS             complement(8125..8265)
                     /locus_tag="U1335_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231308.1"
                     /translation="MSFKFLQAKRIEEKVFSEKEKAELMEQASFLEELAHDLQSIRFM
                     AY"
     gene            complement(8405..9571)
                     /locus_tag="U1335_000813"
     CDS             complement(8405..9571)
                     /locus_tag="U1335_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEM5231309.1"
                     /translation="MNYLVISPFYPENFQPFTIELAKKEGVTVLGIGQEPYDQLPEEL
                     RNALTEYFRVNDLENIDEVKRAAAFLIYKHGPIDRVESHNEHWLENDAALREQFNIFG
                     AKPKHLKKTKFKSEMKKFFSKAGVPVVPGMVVKTEKDIEKAVKAIGFPMIAKPDNGVG
                     ASGTFKLTKKADIETFKNAWDGQTVYFFEKFVNSSIITTYDGLVDHEGNVVFETGLTY
                     VHTPFELMQSKKDNAYYIEKELDPKLVKYGRAVIKAFGMRERFFHIEFFKDGKDYIAI
                     EYNNRMAGGFTVEAYNYAHSIDLFRDYANIVTGGNVEERRFDSQYCLVATRRDTTDYV
                     YSADDIYQKFADKIKTVKRMPDAFAELQGNDAYILVTESKEELDEMIAYIGLTK"
     gene            complement(9589..10335)
                     /locus_tag="U1335_000814"
     CDS             complement(9589..10335)
                     /locus_tag="U1335_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HEM5231310.1"
                     /translation="MHVEFLSHWSGNLGREMNLNRYGHAGIPVVVFASSGGSYNEYAD
                     FGMIEACRGSIEAGHVQFFTLTSYDSESWLADWKSIHDKAEAHRAYERYVIEEAIPFI
                     KHKTGWFDGMMTTGCSMGAYHALNFFLQHPDVFTKVIALSGVYDARFFNNNQDYGHDD
                     AVYQNSPSDYIWNQNDGWFIDKYRQADIIVCTGLGDWEQDGLDSFYNLKRAFEEKNIP
                     AWFDTWGTDVAHDWVWWRKQMPFFLHSIGL"
     gene            complement(10363..11187)
                     /locus_tag="U1335_000815"
     CDS             complement(10363..11187)
                     /locus_tag="U1335_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002897562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM5231311.1"
                     /translation="MNKSYFYLDMKTHELDVPFTGRKRRVRVLLPKGYEENTETTYPV
                     VYFHDGQNVLYSKEAFSGHSWKVIPTIKRNPDIAKMIIVAIDNDGTERMHEYAAWKFS
                     EMGIPGIQFGGKGTLYAEFVMVVVKPFIDQEYRTKSDKAHTAMIGSSLGGNITQFMGL
                     AYQDQIGCLGVFSSANWLHQEAFDRYIERQNLDKDQRVYIYVGTEEADDTDKTLMAGN
                     IKQAYINSSLTYYRQLIAGGVDLDNIALEVVSGAVHSEEAWATYLPDCLRFLSEKW"
     gene            complement(11266..12306)
                     /locus_tag="U1335_000816"
     CDS             complement(11266..12306)
                     /locus_tag="U1335_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix DNA-binding domain-containing
                     protein"
                     /protein_id="HEM5231312.1"
                     /translation="MHHDTWKGIILQKQGLLKPQSVQQICQNLNGLQAQFQPYVHVGF
                     RNRMTVEDFYEGSWQEDLTRQWFIRRTVHAYLKSEISLYIHEGRLASTDYLKIEGRDG
                     FSPQTKQKYHQLILEALEQGPMTREELKSLCRSEKMTLEEEKQVFNAWGGLFRYMVER
                     GEVYQEYGAKRFHRLIDFQPLLREKAELEIARRYFVGFGPVSLADARYYFKENKSTVL
                     NWMEQLDLKTVEVAGEERFYLGELEEAALPDCLFIAGFDQLLLGYEKKANPFFDPKHI
                     RQIYTLTGIVKPVVFYKGRLVATWRRDKGRIELSILEKLTSREQKELENYRQDYEERL
                     KQEASLFGKSEK"
     gene            complement(12372..13208)
                     /locus_tag="U1335_000817"
     CDS             complement(12372..13208)
                     /locus_tag="U1335_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM5231313.1"
                     /translation="MIKEFNETVRYLESVLESEIDEREFLRISGYSVPMFSRLFSILT
                     DMSLSEYVRLRKLTRAAMDIREGQAKIIDIALKYGYESSDSFAFAFKQFHQISPSQVR
                     KGLPFKVLLPLQLSLTIQGGKEMDVRIEKKAGFTVAGLLRTAISNEVCPQVWEDLFKN
                     HTYEELAALGSGRSFGVCTLAQADETINYMAAYDVTDSEKATKLGLELLDVHEADYAI
                     FTPTGPVPQSIHAGWRYALETFFPEHGYRHSGAPDFEYYFEGDMSSPDYQMELWIPIV
                     KA"
     gene            complement(13285..14619)
                     /gene="trmFO"
                     /locus_tag="U1335_000818"
     CDS             complement(13285..14619)
                     /gene="trmFO"
                     /locus_tag="U1335_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate--tRNA-(uracil(54)-
                     C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO"
                     /protein_id="HEM5231314.1"
                     /translation="MSQTHINVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKPTPQHK
                     TDKFAELVCSNSFRGDSLTNAVGLLKEEMRRLDSIIMRAGEAHRVPAGGAMAMDRENF
                     SQAVTDEIHNHPLIEVIRGEITEIPEDAITVIATGPLTSDALAEKIHALNGGDGFYFY
                     DAAAPIVDSSTINMDLVYLKSRYDKGEAAYLNAPMNKEQFTAFYEALISAEEAPLNSF
                     EKEKYFEGCMPIEIMAKRGIKTMLYGPMKPVGLEYPEDYKGPRDGEYKTPYAVVQLRQ
                     DNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLEQT
                     FATKKNPNLFFAGQMTGVEGYVESAASGLVAGINAVRRFRGEEPVIFPQTTAIGALPF
                     YITHTESKHFQPMNVNFGIIKELDGPRIRDKKERYEAIAERALKDLEEFLTV"
     gene            complement(14815..15564)
                     /locus_tag="U1335_000819"
     CDS             complement(14815..15564)
                     /locus_tag="U1335_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5231315.1"
                     /translation="MKSYKNYIFDFYGTLVDIRTDENKLEAWNQLTQIYNAFGCSYRP
                     RQLKNAYHRFVEEAERSLAATVSYQYVEIDLETIFIRLLTDAPNANQSTNKPTDLETF
                     GQVVATIFRVLSREKLEAYENTLTSLQTLKDREVRLFILSNAQRIFTQAEIEQTGCAD
                     LMEKIYISSDFKMKKPEPAFLQLVLEENNLDVEETVMVGNDLTSDIAIAHELGMDSIL
                     LNTFPYSQEEIDSYRRLGWNFEVVGDIAELL"
     gene            complement(15689..16054)
                     /gene="rplL"
                     /locus_tag="U1335_000820"
     CDS             complement(15689..16054)
                     /gene="rplL"
                     /locus_tag="U1335_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018371186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEM5231316.1"
                     /translation="MALNIENIIAEIKEATILELNDLVKAIEEEFGVTAAAPVAVAAA
                     GGAAEEAKDSFDVELTSAGDKKVGVIKVVREITGLGLKEAKELVDGAPAMVKEGVATA
                     EAEEIKAKLEEAGASVTLK"
     gene            complement(16120..16614)
                     /locus_tag="U1335_000821"
     CDS             complement(16120..16614)
                     /locus_tag="U1335_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001287276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEM5231317.1"
                     /translation="MSEAIIAKKAELVNAVAEQMKAATSIVVVDARGLTVEQDTVLRR
                     NLRGAEVEYKVIKNSILRRAAEQAGLEGLAELFVGPSAVAFSNDAVAPAKTIYDFAKT
                     ADALEIKGGAVEGKVSSKEEIEALATLPNREGMLSMLLSVLQAPVRNVAYAVKAVAEK
                     EDAA"
     misc_feature    complement(16641..16775)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00557"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L10 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00557"
BASE COUNT         4708 a         3864 c         3395 g         4865 t
ORIGIN      
        1 actcatatag caaaattcag gagaaaatga tgagacgcga gttattattg gaaaaaattg
       61 aacagctaaa agaaatcatg ccttggtatg tcttggaata ttatcagtca aaattggctg
      121 tgccttacag ttttacaacc ttatatgaat acttgaaaga ataccgtcgt ttttttgaat
      181 ggttacagga ttcagatttg ctatctgtgg aacggattgc tgacattccg ctggatgttc
      241 tggaacattt gacaaaaaaa gatatggagt cctttattct ttatctgcgg gagcgtcccc
      301 tgctgaacgc caataccacg cagaatggtg tgtcgcagac cactattaac cgcactctgt
      361 cggctctttc tagtctcttc aagtatttaa ccgaagaagt ggaaaatggg cagggcgagc
      421 cctacttcta ccgcaatgtc atgaagaagg tgtccaccaa gaagaagaag gaaaccttgg
      481 cggcgcgggc ggagaatatc aagcaaaagc tctttttggg cgatgaaacg atggaatttt
      541 tggactatgt agacaaggaa taccaggtta agctgtccaa acgtgccctc tcctccttcc
      601 aaaaaaacaa ggaacgggat ttggcgattc tggcacttct cttggcttct ggcgtccgtc
      661 tgtcagaagc ggtgaatttg gatcttcgag atgtcaacct caatatgatg attatcgaag
      721 taacccgtaa gggtggtaaa cgggactctg tcaatgtggc aggatttgct aagccttact
      781 tagaagccta catgggcatt cgccagcaac gctacaaggc tgagaaaacg gacacggcct
      841 ttttcctgtc tgagtaccgt ggtctgccta atcgcatcga cgcttcttcc attgagaaaa
      901 tggtggctaa gtattctgcg gacttcaaga tacgcgtaac cccccacaaa ctccgtcaca
      961 cattggcaac tcgtctctac gacgccacca agtcgcaagt tctagtcagt catcagctgg
     1021 gccacgccaa tacccaggtc accgatctct acacccatat cgtcaacgat gagcaaaaaa
     1081 atgcactgga tcagttgtaa tattacataa tataaattat gcaaacaaaa ttaaggagta
     1141 agcgaaaact tacccctttt tctcttaaat ctaaatcaat gctttcaatt tttcctgatt
     1201 gacagctggg tactggtcca aaaaggctga taaagttttc aaaacggcag gaatatagcc
     1261 agtttggtcg ttttccacct gcaagaccaa gagtggctcg tggaggctca tgcggagcaa
     1321 gagccagccg tccccataag gctgagtcag gtcaaaccgc actccttctt cattttctgg
     1381 gttaaaagca aagccttcga tgctggtttg gcggaggtca gcaatcacct gttcaccaag
     1441 tgctcgatag tctgccactt ctaatttgaa acgcacttct tgggtttcca gcggttgttt
     1501 aagctgggca atcaagtcgt ccaaggactt gccttccgct tgtagttttg gtaagagcat
     1561 gagaatctta gccgccacat acgttccatc atcaaggaag taattttcct taaaggcagc
     1621 gtgtcctgag gtttcgatag ccaactggca atcaactcct tcttgattag ctaaaatagc
     1681 acggttaatg acattacggt aacctgaaat atagcgaatt tgtttgcctc ccaggctttc
     1741 tataaagacc ttaaggtgtt cagtcgttgg ggaattggtc acaatgctgg ttcctggatg
     1801 ttcagctagg acaatctggc tgagaacggc aatcaggttg tttcgattga gaatttgacc
     1861 tgacttggtg accagggcgg cacggtcaac gtcggtatca aatataatac caagatctac
     1921 accttgcttc aagacagcct gacgaatgct ttccatagct tccttgttat cagggtttgg
     1981 aacgtgattt gggaaagttc cgtctgggtc taggaattgt gagcctgtgg tgtctgctcc
     2041 tagctctgcc aacactttct cagcaaagaa tcctcccgca ccgtttccag catcaacgat
     2101 aatgttgaga ttggcaagtg gtttttcttg tccaccacaa gcggtacgaa ttttgcctac
     2161 gaggtcttgg gagtaaggca taatcaggtc tgcggtggtc acacttccaa gggtggaagc
     2221 tggcaagtct tcgctatgtg agaggatgaa gtcgatatct tcgtgctctg ctccgccatt
     2281 ttccgaaaaa atcttaatgc cgttaaagta ataaggcagg tgactggcag taaccatgac
     2341 gcctgcgtgg cacttgaact gcgggtactg ggtgctcatg aagagtgctg gtgtggtggc
     2401 catgccgaag tcaatcaact gaatgcccaa acgcactgct tcttctgtga aggcggcgac
     2461 caagtctgga ccactgaggc ggctatctcg gccaatacca atcttgagtt gtcctacttg
     2521 ataggcttga gcaagttcag gcttctgggt cagccaatga attagtccgc gaaccacttc
     2581 cttgatggcc agtggagtga gattgacagc atattcatct gtagcgatag caattccacg
     2641 aatatccgat ccgttttgca aaacatgatg gtgtgacata gtagcctcct gatttatcta
     2701 gtaggttcag tatatcacaa aatcaaaacg ctttcaaaag aaaaaagtac agcttctact
     2761 gtactttggt gatggttact gtggtgccga cgtctactcg gctttccacg gaaatagcta
     2821 gctccaactg atccaagact cgcttggtca gatagaggcc aaaacctgtc gctttctggt
     2881 gttcacgacc gttaaagcct gtaaatccct catcaaacag gcgtggaata tcttccgcca
     2941 gaatgccaat tcccgtatcg gaaatggaaa ttccctcatt cagttcaatg gctaccttac
     3001 caccagtctt attgtacttg agggcgttgt ctataatctg tgatagggca aaggcgagcc
     3061 atttcttatc ggttttcagc gaccagttac cgtcaatatg gacactgatt tctttttgta
     3121 ggaactgatt gcggtatttt ttgaccaaat cgaccaccac ttctcttact tccacctgct
     3181 caaatcgaaa atcgctggta tggttggtca gcttgaggta gttgagcaga ttggccatgt
     3241 aattatccaa ccgcaaaagc tggtgatcga catcctgctg gttgagattg tcagtctggc
     3301 tcatcaaaga cagggcagca agaggcactt tcatctggtg agaccacatt ttgaccatag
     3361 cttgcaggtc ttcttctcgt gacttataga ccaaaagctg ctcccgcgtc gcctcctttt
     3421 ccgcttcaat taagttcaga tagaccaagt ccaccggctt attaagcagg gccagagcct
     3481 cctcatgcac atagtcttcc aaggccctca tacggttgcg aaacttccag aacaggccta
     3541 cagtcagtag gattaaaagg gttagggaca atagcagagc gttttgcagg aattcggtgg
     3601 gcagttgata gagaaagaaa agcaagataa aactagtagc cagaacaatg taggagaagt
     3661 aaaaactccg gtattcgcgg ataaattttg ctatcatttg accaagtacc ccacgccacg
     3721 aacggtatga attcgttcaa acccgacttc gctcaccttc ttacgcaatc tagtcatgtt
     3781 tacattgagc gtattctggt caataaattc ctcattttcc cagagctttt ccaagagttc
     3841 gtccttgcta acaatctgcc cttgtcgttc tagtaaggca gataaaatct tggtttccgt
     3901 aggtgaaagc tgaacctgtt ccgattcgtt tgaaaatcga ccgtctaaac taagttgaaa
     3961 ctggtcgata gacaaatcgc tcgatttgct gaattgatta acccgacgca gaaaggcacc
     4021 gattttggca tccaaaattc ccagtgaaaa aggcttagaa acaaaatcat cgcctcccat
     4081 gttcatggcc atgactgcat tcatctcatc atcgctagag gaaataaaga taatgggcat
     4141 ggtcatggtt ttacggattt ctgtcgtcca gtaaaaaccg ttgtaataag gcaggctaat
     4201 gtccatcagc accaagtctg gtttgatttc agtaacttcc tgactgacag ctcggaaatt
     4261 ctgcacactt tccacctgat acgattttcc cagatgctgc ttcaagagct gtacaatcat
     4321 ttcatcgtct tcaacaatat aaatcttctc ttttttcatc ttcttcattc tgcaaaagcc
     4381 aggacacaag tcttggcttt ctatttatat atttctttcc gatgcccgac ttcaagggct
     4441 gttacgatca atttatcatc ctcaatgctg acgatgaccc tgtagtttcc gatacgatag
     4501 cgccattggc cagaacgatt ggcagtcaag gcttttccgt actgtctggg attgtcacac
     4561 ccgtcaatat gcttgtaaag ataccgcaaa atcaaacttg cagcagtttt atccatcttt
     4621 cgaatttgct tttgagcctt agcggacaaa ataaccttat aactcaatgc ccaactcctc
     4681 agccatttgt tctagtgtta tcggctcaat tccattcgcc aagtcttctt ggtattctgc
     4741 ccaagcaata tctgccacac gcgcatcgta ctcgtcttca agggcttcaa gggttttagt
     4801 ccgaatgagt tctgacaaac tcacaccttc aaactttgcc atagcctgca taaagagctt
     4861 gtcctgctca gaaactttca atgtgatagc tgccattttt cttacctctt atagtattcc
     4921 tttggtatta ccattgtaac actatttccc taagaaagca agaaatctcg cacaaggcga
     4981 gacttctgct accgttcaat aatgcggtaa taggtgcgac tagtccactt gtaaatgaca
     5041 aagtagatga atacaactgc cagtagggta attccgctga ccgtataaat cattagagat
     5101 gaggtaaccc caaaactcag tagcatttgc ttgagcatga caagggcgat gacaaagtgt
     5161 agggtcgcca tgaccaaagg cataaagaag accgtaagtg tttgggcgtt aatggtcttt
     5221 ttgaccgctg ctgcactcat ccccacttct tgaagaatct tgtaggattt cttgtcctca
     5281 tacccttccg agtactgctt gtagtagata atcaaggctg cacccagtag gaaactaatt
     5341 cccagcaaga aacctgtaaa gaggaaaccg cctgtaaagc ccatcagtaa attgttgaaa
     5401 tccgtacgtt gcataacatt tccaagatat tccccatttt catcgagaat ttcatatatt
     5461 tcaccagatt gctctccaag agagagtacc tcttcatcag tcaagtcggt aaagacacgg
     5521 tagtccagac taacaagata gccttgcgga ttattggact cataatactc acgaacagta
     5581 ttcaatacgg tgtcatcact gactaccata acggcggcat ttagcgtatt ggtgatgtct
     5641 gggaaaataa cctggtcaag attggctaca ttctcaaagg tttgatcacc caaaacaagc
     5701 ttcttaagcg atggcttttc actcggacgc ataaagacca cttgattggc agcaagctct
     5761 ggcaggtcat tccccaattt cctgaaatca tcttgggtaa tgaagtaggt aaaggccatt
     5821 ttgctaaaat ctggattgga aatggtttct gggctaatga caatctcttc gccaccatca
     5881 tagaccagac cagcttggta ggtcagatag gatagactgt catttgcttt ttctggaaaa
     5941 tggctgagca ccgattgctg gaaggccatt tcaccctgac ttctattcga aactttatag
     6001 gtaatagatg tttccttggg atatagtgca cctgtcatac tgctcatacc tgtataaagg
     6061 gaggttgtgg tcgcaatggt cacaaaggcc atgactgcaa gcagtgtaat attggccaaa
     6121 cccgttgcgt gctgtttcat ccgaaaaatc atctgcgatg tggtaatgaa atactctggc
     6181 gtatagaaat accgcttgtt tttccgacga gtcttcaaat accaagtcat aaagctgatg
     6241 tagaacagat aggtccccgc aatgacaaag agcacagcga taaagaaccg atagataaca
     6301 tctagaccta ctgctttaga tgaaagcgat aggtagtatc caacacccag tcccactaca
     6361 ccaagggcag ccagaaggac attgcctttc ggttccttct ctcctttttc actagctcgg
     6421 aacaaaatca gcggactggt cttgccaatg gttcgaatgg ccagcaattc caagagaaag
     6481 aagaaaccag caaagagaaa ggcggtcatg acaaaggcca gaggggcaat tccaaaatgc
     6541 aaatcactat aatgtgttag attgacaaaa atcaagtaga gaacatttga aaaaactcca
     6601 gctaagacag aaccaagaac cacaactagc aagaaaatca tcatcaattc gaggctagct
     6661 atcaaggcta cttttttctt gttcatcccc agcatgttat agagaccaaa ttccctcgcc
     6721 cgttgtttca tcaagaaatt aaagctataa atctccataa tgaccgagaa aatggttaga
     6781 acaacaacac caagaccgat agaaatggca cctgagccca tggtcttcat tactggactc
     6841 agcatgagta agaacatgga acaaatcaag gtaaagagaa ccagactggc taaaacgaag
     6901 ggagcaaaaa cacccatgga ttttcggata ttttgcccag caagtttgag gtaaaacatc
     6961 tactcacccc ctaaaagtgc agacatattg agcgaaatct ccttggcaaa gtcttgattg
     7021 ctcttacctg ccttgtacaa ttggtggaaa atccgaccat ccttgatgaa gaggacgcgt
     7081 ttggcgtggc tggctgcgtt ggccgagtgg gtcaccatga gaatggtttg accgtcacgg
     7141 ttaatctctt caaacaaatt cagcaagtct tccgaattgc ggtaatctag ggcagctgtc
     7201 ggttcgtccg ctaggacaat ctgtggctgg gtaatcaaac tacgagcaat ggccacgcgc
     7261 tgcttttgtc caccagaaag ttcaaaggga cgttttttca gcaaatcttg aatccgcagt
     7321 tttggcgcca aaactttcaa acgattttcc atttcctcat ggctggtacg tgccaatacc
     7381 agaggtaaaa agatattgtc ttggatggac agggtgtcca agagattaaa atcttggaag
     7441 acaaagccca gattacgcaa acggaaatct gccagcttgc tttccttgat ttttgtgatg
     7501 tcttgattgt ttaagataac agaacctctc gttggcttgt ccagggttgc tagaatgttg
     7561 agcaaagtcg tcttacctga accactttca cccatgatgg cgataaactc gccctcttct
     7621 accttaaaat ccacatcttg caaagcacga gtttcctctt ttgaaaagcg cgtgcgataa
     7681 actttttcta aatgattgat ttctaataac atagttactc ctaattcctt attcactgtc
     7741 taaatcaact tggtcaagaa ctgcttgata gtcgattcgg tctgattcag caatattatc
     7801 ttctaaatcc accttataat aaccaccctg gacaccgatg gcccattcct tgttagaagt
     7861 agtgtaaaga ttattcaagg aaactgtttc tttgacagaa ctctcttctt tgacaacggg
     7921 ccattccata aacttggctt ctgttcctcg aatactatct tcggcaactt cctgcttgct
     7981 aacggcatag tcttttccct tgtaatggaa agtttgatag ccctcatcaa agctaagacc
     8041 tgctgaagag gaagaacaag cagttagcat tatactgccc aaagccagca aaccaaatac
     8101 tttctttttc atagtttcct ccctctagta tgccataaat cttatacttt gcaaatcatg
     8161 ggcgagctct tctaagaatg aggcttgttc catgagttca gccttttctt tttctgagaa
     8221 tactttttct tctattctct ttgcttgtaa aaatttgaat gacatatgat ttccttcttt
     8281 ctatttctta tgagtctatt atagaaaata ttcctcctgt gctctcttac agttctgatt
     8341 aaaaaactta cagctttgta aggaaagaaa aaaagacacc atttctggcg tcttacagtt
     8401 agttttattt tgttagacca atgtaggcaa tcatttcatc taactcttcc ttgctttcag
     8461 tcactagaat gtaggcatcg ttgccttgca attccgcaaa ggcgtctggc atgcgtttga
     8521 ctgtcttaat cttatcagca aatttctgat aaatatcatc tgctgagtaa acatagtctg
     8581 ttgtatcacg acgagttgct accaagcagt attgtgaatc gaatcgtctc tcttcaacat
     8641 taccacctgt tacaatgttt gcgtaatcac ggaaaaggtc gatagaatgt gcatagttgt
     8701 aggcttcaac agtaaagcca cccgccatgc ggttgttgta ttcaatggcg atatagtctt
     8761 taccatcttt gaagaattca atgtggaaga aacgctccct cataccaaaa gctttgatga
     8821 ccgcacgtcc gtatttaact aatttcggat ctaattcttt ttcaatatag taggcattat
     8881 cttttttgct ttgcatcaat tcaaacggtg tatgaacata ggttaaacct gtttcaaaaa
     8941 caacatttcc ttcatgatcg accaatccat catatgttgt gatgatgctt gaattaacaa
     9001 atttttcaaa gaagtaaacc gtttgaccgt cccaagcatt tttaaatgtt tcgatatcag
     9061 cttttttggt caatttaaag gttccggaag caccgactcc attatctggc ttggcaatca
     9121 ttgggaatcc aattgctttt acagcttttt caatatcttt ttcagtcttg acaaccattc
     9181 caggaacgac tggtacccct gcttttgaga agaatttttt catctctgac ttaaatttag
     9241 tctttttcag gtgttttggt ttggcaccaa agatattaaa ttgttcacga agggctgcat
     9301 cattttcaag ccaatgttca ttgtgggatt ctacacggtc aattggacca tgcttgtata
     9361 tcaagaaagc agctgcacgc ttgacttcgt caatattttc caaatcattg acacggaagt
     9421 attctgttaa ggcattacga agttcttcag gcaattgatc gtaaggttct tgcccgatac
     9481 ctagaaccgt aacgccttct tttttagcca attcaatggt aaacggttga aaattttctg
     9541 gataaaaagg tgaaataacg agataattca taggtagtcc tttctaactt aaagtccaat
     9601 agaatgaagg aagaatggca tttgctttct ccaccacacc cagtcgtggg ccacatctgt
     9661 tccccaagtg tcaaaccaag ctgggatatt cttttcttca aaggcacgtt ttaggttgta
     9721 gaatgagtcc agaccgtctt gttcccaatc gcccaaaccg gtacaaacga taatatcagc
     9781 ttggcggtat ttgtcgatga accaaccatc attctggttc cagatgtaat cagacggtga
     9841 attttgatag accgcatcat catgaccata atcttgattg ttgttgaaga aacgagcatc
     9901 atagacacct gaaagggcga tgacttttgt gaaaacatcc ggatgctgga ggaagaaatt
     9961 cagcgcgtgg taggctccca tagagcaacc agtcgtcatc atcccatcga accagccagt
    10021 tttatgtttg ataaagggaa tcgcttcttc aatcacatag cgttcgtagg cgcggtgagc
    10081 ttctgcctta tcatgaatgg atttccagtc tgccaaccag ctttcactat cgtaactcgt
    10141 taaggtgaaa aattgaacat gacctgcctc gatagatcca cggcaggctt caatcatacc
    10201 aaaatctgcg tattcattgt acgaaccgcc tgatgaagcg aaaacaacca caggaatccc
    10261 tgcgtgacca taacgattta gattcatttc tcggccaaga tttccagacc aatgacttaa
    10321 aaattcaacg tgcatctttt ttctcctaac taattcttta aattaccatt tttcacttaa
    10381 aaagcgcaag caatctggca aataagttgc ccaagcttct tcactatgga ctgcacctga
    10441 aacgacttcc aaggcgatat tgtccaaatc cactccgcca gcgatcaatt gacgatagta
    10501 agtcagagag gaattgatat aggcctgctt gatatttcct gccatcaaag ttttatctgt
    10561 atcatcggct tcttctgttc caacgtagat ataaactcgt tgatccttgt ctaagttttg
    10621 gcgctcaata tagcggtcaa atgcttcttg atgaagccaa ttggctgatg aaaagacacc
    10681 cagacagcca atctggtctt gataagccaa tcccataaat tgtgtgatat taccacctaa
    10741 agatgaacca atcatagctg tgtgagcctt atcagactta gtacggtatt cttgatcgat
    10801 aaagggcttc accacaacca tgacaaattc ggcatataag gttcccttgc caccaaactg
    10861 aatgcctgga atccccattt cgctaaactt ccatgcggca tattcatgca tccgttcagt
    10921 accatcattg tcaatcgcta cgataatcat cttggcaata tcgggatttc gcttgattgt
    10981 cggaatgact ttccatgaat gacctgaaaa agcttcctta ctgtagagta cattttgccc
    11041 atcgtggaaa taaacaacgg gataggtcgt ttccgtattt tcttcgtaac cttttggcaa
    11101 taagacacgg acacgacgct ttcgaccagt gaatggaacg tctaattcat gggttttcat
    11161 atccaaataa aaataggact tgttcatata catctctttc taacagtatt tttagtatta
    11221 taccatagtt tttgtaaaat attcagaaaa tttagttatt tcaggtcatt tttcggactt
    11281 tccgaacaaa ctagcttcct gtttgagcct ctcctcgtag tcctgtctgt agttttccag
    11341 ttctttctgt tcccgactgg tcagtttttc caagatagac agttcaatcc tgcccttatc
    11401 tcgtctccag gtcgcaacta gtcgtccttt gtagaaaaca acgggtttga caatgccagt
    11461 cagtgtataa atctggcgga tatgcttggg atcaaagaaa ggattggctt tcttttcata
    11521 acctagcaaa agttggtcaa agcccgcaat gaagaggcag tcaggtaggg cggcttcttc
    11581 taattctccc agataaaagc gttcttcccc tgctacttca acggttttta aatctaattg
    11641 ctccatccaa tttagaaccg tagatttatt ttccttgaaa tagtaacggg catcggctag
    11701 gctgactggc ccaaaaccta caaaataccg tcgagcaatt tccagctctg ctttttctcg
    11761 caaaagtggc tgaaagtcta tcagacgatg aaaacgcttg gcaccgtact cttggtagac
    11821 ttccccacgc tcgaccatgt agcgaaagag accgccccag gcattaaaga cctgcttctc
    11881 ttcttccagt gtcattttct cggatcggca aagggacttg agttcctcgc gtgtcatggg
    11941 accttgttca agggcttcta aaatcagctg gtgatatttc tgcttggtct gaggactaaa
    12001 accgtcccgt ccttctatct tgaggtagtc ggtgctggcc agccgcccct cgtggatata
    12061 gagagaaatt tccgacttga gataggcatg gaccgttcgc cgaatgaacc actgacgagt
    12121 cagatcctcc tgccagctcc cctcataaaa atcctccact gtcatacggt tacgaaatcc
    12181 gacatgaaca tagggctgaa actgagcctg caaaccattg agattttggc agatttgctg
    12241 aacagactgg ggtttcaaca gaccttgttt ctgcagaata atccccttcc aagtatcgtg
    12301 gtgcatcgta tttttcctcc gcttttctaa tcccagtata acacaaaaga cacccgaagg
    12361 tgtcctgtac attatgcttt cacaatggga atccagagtt ccatttggta gtctggggaa
    12421 ctcatgtctc cttcaaaata gtactcaaaa tctggtgcac ctgaatggcg atagccgtgt
    12481 tcaggaaaaa aagtttctag cgcataacgc catcctgcat gaatagattg aggaacagga
    12541 cctgttgggg taaaaatagc atagtcagct tcgtgaacat caagaagttc taagcctaac
    12601 ttagtcgctt tttcactatc tgtgacatca taagcagcca tataattaat cgtctcgtcc
    12661 gcttgagcta atgtacaaac tccaaaggac cgcccacttc ctagagcagc taactcttca
    12721 taagtatggt tcttgaacaa gtcttcccat acctgcggac acacttcgtt actgattgct
    12781 gtgcgaagaa gtccagcaac tgtaaaacca gccttctttt caatacgaac atccatttct
    12841 ttacctcctt ggatggttaa tgatagttgc aagggtaaga ggaccttaaa aggcaacccc
    12901 ttacgcactt gactaggaga aatctgatga aattgtttga aggcaaaggc aaaagaatcc
    12961 gaagattcat acccatattt aagggctata tctataatct ttgcctgtcc ttcacgaatg
    13021 tccatagcag ctcgcgtcaa ctttcgtaac cgaacgtatt ctgacaagga catatctgtc
    13081 agaatcgaaa agagacgact aaacatggga acggaatatc ctgatatgcg caaaaattcc
    13141 cgttcatcga tttcgctttc taaaacggac tctaggtaac gtacggtttc attgaactct
    13201 tttatcatca acttcccctt tccctatcag tttaccatct accatccaag ttttcccgat
    13261 acttttcgtc ggaaaactat cggcttaaac cgttaaaaac tcttccaagt ccttgagggc
    13321 acgctctgct attgcttcat aacgctcctt cttgtcgcgg atccgcggtc cgtccagctc
    13381 cttaatgatg ccaaagttga cattcatagg ctggaagtgc ttgctttcgg tgtgggtgat
    13441 gtagaatggc agagcaccga tggctgtggt ctgtgggaag ataactggtt cttcgccacg
    13501 gaagcggcga acagcattga taccggccac taaaccagaa gcggcagact caacatagcc
    13561 ttctactcct gtcatttgac ctgcaaagaa cagattggga tttttcttgg tggcaaaggt
    13621 ctgttccaat aagtttggcg aatccatgta ggaattgcgg tgcataacgc cgtagcggac
    13681 aaattcagca ttttcgagtc ctggaatcat ctggaagacc cgcttctgct cgccccactt
    13741 gagatgagtc tggaagccaa caatattgta aaggctacct gctgcgttgt cctgacggag
    13801 ctgaacaact gcgtaaggtg tcttgtattc gccatcacgt ggtcccttgt agtcttctgg
    13861 atattccaat ccaactggtt tcattggtcc atacaacatg gttttgatac cacgtttggc
    13921 catgatctca atgggcatac agccttcaaa gtatttttct ttttcaaagg agttaagcgg
    13981 tgcttcctcg gctgaaatca aggcctcata gaaagcggtg aactgctcct tgttcatggg
    14041 tgcattgaga taggcagcct ctcccttgtc gtaacgggac ttaagataaa ccaagtccat
    14101 gttaatggtc gagctgtcca caatcggcgc tgccgcatcg tagaagtaaa aaccgtcgcc
    14161 accattgagc gcgtgaatct tctccgccaa ggcgtctgac gtcaaaggcc ctgtcgcaat
    14221 aactgtgata gcatcttcag ggatttctgt aatctcccca cgaatgacct caatcagtgg
    14281 atgattgtga atctcatctg tgaccgcttg agagaaattc tcgcggtcca tggccatggc
    14341 accgccagca ggcacacggt gagcctcacc agctcgcatg ataatggaat ccaaacgacg
    14401 catctcttcc ttgagcagtc cgacagcgtt agtcaaacta tcgccacgga aagagttaga
    14461 acaaaccaac tccgcaaact tgtcggtctt gtgctggggc gtcggcttaa cgccccgcat
    14521 ctcgtagagt ttgacaggaa tgccacgttt ggcaatctga tatgcagctt ctgagccagc
    14581 caagccagct cctataacgt taatgtgggt ttgagacatg aaactaatac ctctagccag
    14641 aatatctgac cactgtttgg gaatacccca aaacagaacc tttctaaatt ttatacctat
    14701 ctagtatacc agaaaatggc tagaaaagac aaaactacct tcattgaaat gaaagtagtc
    14761 ccatcgtttt acataatata ttttatgtat atcctttact gttctatcgc ttatttacaa
    14821 tagctccgct atatctccaa caacctcaaa attccaacca agtctcctat aagagtcgat
    14881 ttcttcctga ctatacggga aagtattcag caaaatggaa tccattccca attcatgagc
    14941 aatagctata tcggatgtca aatcattacc aaccataacc gtttcttcaa catcaagatt
    15001 attttcctct aaaaccagtt gaagaaatgc tggttcaggc ttcttcatct taaagtcaga
    15061 agagatataa attttttcca tcaaatccgc acaacctgtc tgttcaattt ctgcctgagt
    15121 aaaaattcgt tgagcattgg agagaataaa taatcgcact tctctgtcct ttaatgtctg
    15181 tagactagtt agggtatttt cataagcctc taacttttca cgtgaaagca cgcggaaaat
    15241 cgtagctact acttgcccaa aagtctctaa atcagtcggc ttattagtac tttggtttgc
    15301 atttggtgca tccgttaata ggcgaatgaa gattgtttct aaatcaattt cgacatactg
    15361 ataactcact gttgccgcga gagatctctc tgcctcttct acaaaacgat gataggcatt
    15421 tttcaactgg cgcggtcgat aggaacaacc aaaagcattg taaatctgtg ttagctgatt
    15481 ccaggcctct agtttatttt catctgtacg aatatcaacc aatgtaccat aaaaatcgaa
    15541 gatatagttt ttgtaacttt tcatgtcttt ctcctaatct ttagacagca ttttttatat
    15601 tatacctcac aacgaaaacg tttgcaataa tagaacaaaa aaacctacca catcaggtga
    15661 taggttttta ttttgattgg aaactctatt atttaagagt aactgaagcg cctgcttctt
    15721 ccaatttagc tttgatttct tcagcttctg cagttgcaac gccttcttta accatagctg
    15781 gtgcaccgtc aacaagctct ttagcttctt taagaccaag accagtgatt tcacgtacaa
    15841 ctttgataac gccaactttt ttgtcgccag cagatgtcaa ttcaacgtcg aatgaatctt
    15901 tagcttcttc agcagcacca ccagctgcag caacagctac aggagcagcc gcagttacac
    15961 caaattcttc ttcgatagct ttaacaaggt cgttaagctc aaggatagta gcttctttaa
    16021 tttcagcaat aatgttttca atgttcaatg ccattgtgat tttcctccaa tttaggtttt
    16081 taaatagttt gtagcactaa gcagctacgc tctgacgcat taagctgcgt cttctttttc
    16141 tgcaacagct ttgacagcgt atgcaacgtt gcgaactggc gcttgaagta cagaaagcaa
    16201 catagaaagc atgccttcgc ggtttggcaa tgtagcaagt gcttcgattt cttctttaga
    16261 agaaacttta ccttctacag caccaccttt gatttcaaga gcatcagcag ttttcgcgaa
    16321 atcgtaaatt gttttagctg gagcaactgc atcgtttgag aatgcaactg cagatggacc
    16381 tacaaacaat tctgcaagac cttcaagacc agcttgctca gcagcacgac gcaagattga
    16441 gtttttgata actttgtact caacttctgc accacgcaag ttacgacgaa gaactgtatc
    16501 ttgttctact gtcaaaccac gagcgtctac aacaacgata gaagttgcag ctttcatttg
    16561 ctcagcaacg gcatttacta attccgcttt tttagcgata atagcttcac tcattttttt
    16621 acctccgttt ttattttggg ctaggcacaa aaaaatcgta cctaaaccta gacacgaaag
    16681 tacaaatacg tttatctcaa taatcgtttt gtgcctcggt aggatgttta tgagtccagc
    16741 tcccctactg tcttaggtca gttttttcaa acctcaatta tcataacaca gtattttcaa
    16801 taatgcaaga cttttttcct atttttttaa tt
//
LOCUS       DASGAC010000033        16002 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.033, whole genome shotgun sequence.
ACCESSION   DASGAC010000033 DASGAC010000000
VERSION     DASGAC010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 16002)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16002)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16002
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.033"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..547)
                     /locus_tag="U1335_000822"
     CDS             complement(<1..547)
                     /locus_tag="U1335_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM5231318.1"
                     /translation="MKTVKEMSQLSGISVRALHYYDEINLLTPSFIAENGYRYYDNEA
                     FEKLQEILLFRELEFPLKEIKKIVGNAAYDREAALKDQIRLLELKKKHLEKVIKHAKS
                     LQQKGENYMNFEVFDKSDLLAFQEEAKERWGNTTAFQEFSAKTNQEGFAQISSEMSGI
                     MMEFGKMKNLSADDSKVQKQVE"
     gene            complement(611..1051)
                     /locus_tag="U1335_000823"
     CDS             complement(611..1051)
                     /locus_tag="U1335_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231319.1"
                     /translation="MAVWFQDVVDSLQMISQGDRYYYDSHIDELVYLSVGEFRIESRD
                     GLEEEIEEDVAGRFVRLPTYYDFNPYTFMELYISDLTDGDLSGRLSRAIRGRGAFRRF
                     KNELERCDRLEEWYAFETQCYKELVLDWCQENEIAIVENRLKKM"
     gene            complement(1055..2707)
                     /locus_tag="U1335_000824"
     CDS             complement(1055..2707)
                     /locus_tag="U1335_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231320.1"
                     /translation="MKNWMDYFKPHIVDRGCSLFLDDAVQGLQKTSDGYNAHVIGGQV
                     YEVEISFEHGQLVNMWCECPYAQEMNHCKHMAAVLFAISELDSQPALEGKDVSLAQLL
                     DKLTVEQLRAVVLELAQEDRELANRLQLRFSAQLTSQQVENVKKEIRDLGLPFEDRRM
                     GYIEYRQTRDYERAVTKAMAQYLQPLLDRCEYESFLAISDAFYHQICQQELDDSNGTI
                     GSLLYRLAGYWQHLLTVAPDKIVQELLDWCLEKLSGYKVAEVLLMEFVETEFQEEHFL
                     EQKLTYFQAVLQAIEGGDKSSWSWKFRRDRFALLCYRLLVQLDSSEADLLTFQANHWE
                     VAGLRKLAIAQAVANQHLDRAVHLLQESKRLDAQYRGLVSDYSQQLRDIYRSQGQDDK
                     VREELLEMIFSAGDTDLELVEELRDYVSREEWQSYLDDLLEDGRFRSQQLKLLQLADR
                     PQELLDRITASYWALENLDRFEDYLSEKLPEQLRDAYAQALCQQMDVASSRSRYRQLA
                     GYLVKIAGLPDGKVVSASLRTSWKVQYPRRKAMIEELDAVRW"
     gene            complement(2800..3891)
                     /locus_tag="U1335_000825"
     CDS             complement(2800..3891)
                     /locus_tag="U1335_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEM5231321.1"
                     /translation="MISGIIAEYNPFHTGHKYLLEQAEGLKIVVMSGNFMQRGEPAIV
                     DKWTRAQMALEHGADLVVEMPFLVSVQSADHFAKGAISILHRLGVEKLVFGTEEMLDY
                     QKIADIYVDKSEEMENFVKNLPDHLSYPQKTQAMWQEFAGLTFTGDTPNHILALAYAK
                     AVAGTGIQLSPVQRQGAGFHSEEVETSYASATAIRKGADQLDLVRAFLPSASLFEEAT
                     KVSWRNYFPLLRYQIATHRALSQVFQVNEELDSRIRSAIGSVATVEELVDAVATKRYT
                     KARVRRVLTYILVNAVEAPLPDAVHVLGFSARGQAYLKTVKERVDLVTRIGKEPWDSL
                     TQQADAVYQLGADAIVEQTYGRVPVRVVR"
     gene            complement(3888..4634)
                     /locus_tag="U1335_000826"
     CDS             complement(3888..4634)
                     /locus_tag="U1335_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5231322.1"
                     /translation="MATYETFAAVYDEIMDDSLYDKWTDFSLRNLPQDTKTILELACG
                     TGIQAVRFAQKGFEVTGLDLSYEMLELAQKKAEVAGVMMELAQADMMALEGVGDFDAV
                     TCYSDSLCYMADQEAVLRVFEGVHSVLNQGGTFLFDVHSIYQMEEVFAGYSYHENYED
                     FAFVWDTYEGEHEYSIVHELTFFVKDEDSQEERFIRRDEVHEERTYPIETYVELLKEA
                     GFASVEVFADFENQAPTETSQRWFFKAVKA"
     gene            complement(4757..5116)
                     /gene="rsfS"
                     /locus_tag="U1335_000827"
     CDS             complement(4757..5116)
                     /gene="rsfS"
                     /locus_tag="U1335_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002903960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEM5231323.1"
                     /translation="MKELDIVKLVVQAADDKRAEDLVVVDVQGVTSLTDYFVIASSMN
                     SRQLDAIAENIREKVAEVGIKSSRVEGDSNGGWVLLDLGGVVVHIFSEEMRDLYNLEK
                     LWHEGSFLEVAELLEEE"
     gene            complement(5118..5627)
                     /locus_tag="U1335_000828"
     CDS             complement(5118..5627)
                     /locus_tag="U1335_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HEM5231324.1"
                     /translation="MKSALLVIDIQNLLVKEKPYAIEERLALWQDSLAQARQAGLEVI
                     HVRHHDQELVKGTADWEIHSIVAPLASEKIFDKTFNSAFKETGLHAYLQEKGIEQLII
                     MGMATNFCVDTTVKVAFEYGYQLAIIKDGTTTGFTGNLSPKDLIDQYQMIWDGRFAQV
                     DTLENILRG"
     gene            complement(5624..6079)
                     /locus_tag="U1335_000829"
     CDS             complement(5624..6079)
                     /locus_tag="U1335_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5231325.1"
                     /translation="MIVLKSVDESSYQAVLDLTVAEEDKVFVAPNVRSLADAWLYREN
                     GDVFPYAIWADEQVVGFVLIDIDEDIQQYMLWRFMIGQEFQGKGYGQAALEVVINQAR
                     AHPVCDHLIAAYVKGNQKMAHLLEKNDFVLDSEEERELVFRLETPGVKL"
     gene            complement(6082..6669)
                     /gene="yqeK"
                     /locus_tag="U1335_000830"
     CDS             complement(6082..6669)
                     /gene="yqeK"
                     /locus_tag="U1335_000830"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     YqeK"
                     /protein_id="HEM5231326.1"
                     /translation="MIATDLTFDRQDLLEKIRAAMKPARFQHVLGVEQAALALADQYG
                     CDPKKASLAALLHDYAKEAEDQVFLDLIAKYDLDRDLLNWDNNIWHGVVGVYKIAEDF
                     GLKDEEIFQAIQRHTIGAGQMTLLDKVLYVADYIEPNRDFPGVDEARRIAKESLDKAV
                     AYETAQTISYLAKKGIPIYPQTLETYNGYVAYLKE"
     gene            complement(6666..7298)
                     /locus_tag="U1335_000831"
     CDS             complement(6666..7298)
                     /locus_tag="U1335_000831"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HEM5231327.1"
                     /translation="MAIELLTPFTKVELEVEKKETNRKQVGILGGNFNPVHNAHLIVA
                     DQVRQQLKLDEVLLMPEFIPPHVDKKETIDEYHRYSMLKMAIAGIDGLGIETIELERR
                     GVSYTYDTMKLLKEKNPDTDYYFIIGADMVDYLPKWHRIDELVQMVQFVGVQRPRYKA
                     GTSYPVIWVDVPLMDISSSMVRNFIKQGRVPNFMVPHEVLDYIEEKGLYQ"
     gene            complement(7311..7622)
                     /gene="yhbY"
                     /locus_tag="U1335_000832"
     CDS             complement(7311..7622)
                     /gene="yhbY"
                     /locus_tag="U1335_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000060164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HEM5231328.1"
                     /translation="MMLTSKQRAFLNSQAHSLKPIIQIGKNGLNDQIKTSVRQALDAR
                     ELIKVTLLQNTDENIHEVAEILEEEIGVDTVQKIGRILILFKQSSKKENRKISKQVKE
                     I"
     gene            complement(7941..9047)
                     /gene="yqeH"
                     /locus_tag="U1335_000833"
     CDS             complement(7941..9047)
                     /gene="yqeH"
                     /locus_tag="U1335_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000391231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YqeH"
                     /protein_id="HEM5231329.1"
                     /translation="MEELFCIGCGAQIQTLDKAVAGFTPQSALEKGLETGQLYCQRCF
                     RLRHYNEISDVNISDDDFLKLLHSVGESDALVVNVIDIFDFNGSVIPGLPRFISGNDV
                     LLVGNKQDILPKSVKTGKVTQWLTERAHEIGMRPVDVVLTSAQNKQAIKDLIEKIEQY
                     RKGRDVYVVGVTNVGKSTLINAIIQEITGDKDVITTSRFPGTTLDKIEIPLDDGSYIY
                     DTPGIIHRHQMAHYLTAKNLKYISPRKEIKPKTYQLNPEQTLFLAGLGRFDFVVGERQ
                     GFTAFFDNELQLHRTKLQGASEFYQKHAGSLLVPPTSKELKEFPELVRHEFTINEKTD
                     VVFSGLGWIRVNEKAKIAAWAPKGVDVVIRKAII"
     gene            complement(9048..9587)
                     /locus_tag="U1335_000834"
     CDS             complement(9048..9587)
                     /locus_tag="U1335_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014829756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqeG family HAD IIIA-type phosphatase"
                     /protein_id="HEM5231330.1"
                     /translation="METTVSLENYMPDFALEKVYDVTVESLKKHGIKVVFVDLDNTLI
                     AWNNPDGTPEMRQWLHDLQDAGIPVVVVSNNKYERVKRAVEKFGIEFEAFALKPFTFG
                     INRALKRFDVQPYEVIMIGDQLMTDIRAAKRAGLKSVLVKPLIQTDSINTQINRWRER
                     RTMKKIIAKYGAIDYKREM"
     gene            complement(9686..10363)
                     /locus_tag="U1335_000835"
     CDS             complement(9686..10363)
                     /locus_tag="U1335_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEC10/PgrA surface exclusion domain-containing
                     protein"
                     /protein_id="HEM5231331.1"
                     /translation="MTIIERADNLERIILPEGYYETLAQYVRAGKTGFDSELEKLGDQ
                     GLDINIYKGSEQDREVILEDIENLPQEIREELARFAANLLNPLREQLGTVAVEVSDLA
                     LDYAVSLAQSLSSSLRYHNYDSLIAIAQLKGVEPKGKDCLAFSEYREVYTLYDAKKLV
                     YKALTWRLFDDSHADYGHATTILGMDEDDSGVEEIGFAFSKYSLDIDWLLTHMIFIPK
                     DWILESK"
     gene            complement(10481..11110)
                     /locus_tag="U1335_000836"
     CDS             complement(10481..11110)
                     /locus_tag="U1335_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HEM5231332.1"
                     /translation="MIKEFCSENHVDLAKAISMGAQRIELCDNLAVGGTTPSYAVIKY
                     VCQLAHEQDATVMTMIRPRGGDFCYDEAEVEMMVEDCKAAIELGSDGLVYGLLTEENW
                     LDEPALERLFAVSQDCQIVFHMAFDQIPRERQFEALDWLAEHGVTRILTRGSLTGSAL
                     NNVEWLQEIVAYAQGKIEILIGGGLTVDNVPTLLEKLAIDQVHGTRLFW"
     gene            complement(11160..12068)
                     /locus_tag="U1335_000837"
     CDS             complement(11160..12068)
                     /locus_tag="U1335_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEM5231333.1"
                     /translation="MAEKRFGTLITLIAGIAWGLSGVSGQYLIGRGMSVQLITSMRLM
                     VSGLVLLGLCAVIARRNLLALLKNGRAVIAVSLFALFGLALNQLAYLQAIAYTNAATA
                     TVLQYLCPILVLAYTCLKDRQRPTGVEVISIVLAIVGTFFIATHGQLTELAITPLGLA
                     WGLFSALTYALYIILPAQVIDQYGSLSVIGLGMLMGGLMVTFGLQTWQGNLPLDGGSL
                     LGLFGIVGVGTIFAYTAFLKGVSMVGPVNGSLLASIEPIASVFFAVWLVNERFYPIDF
                     LGMALILGAVLLISLKDIIISEKSIG"
     gene            complement(12144..13625)
                     /gene="galT"
                     /locus_tag="U1335_000838"
     CDS             complement(12144..13625)
                     /gene="galT"
                     /locus_tag="U1335_000838"
                     /EC_number="2.7.7.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose--hexose-1-phosphate
                     uridylyltransferase"
                     /protein_id="HEM5231334.1"
                     /translation="MMTGLVDRFVEQVIANSDFEEMDALYLRNRVLALVGEQVLTVQT
                     ELTDLIELKEELLAHGVGTGFVGELLEEQDMVGACLMDLMTPSPSQVNRDFWQTYQDS
                     PEQAIGDFYELSKRNDYIKMAAIAKNIYYPVSTEYGDLEITINLSKPEKDPKSIAAAT
                     KAEASNYPKCLLCMENEGYQGRINHPARANHRIIRLDLGQEKWGFQYSPYAYYNEHAI
                     FLNQEHVPMVISPRTFEQLLDLLDLLPGYFVGSNSDLPISGGSILTHNHYQGGRHSFA
                     MEKAPIERQLVFDGFESVSAGIVKWPMSVIRLSSADKPSLLGLATKILEKWRSYSDDS
                     VQIKAETDGTPHHTITPIARKRGDLYELDLVLRDNQTSEEFPNGIYHPHPDVQHIKKE
                     NIGLIEVMGLAILPPRLKAELAEVEKFLLGQDSQVADYHQPWAESLKTAHPDVTEENV
                     EQVVRESVGQIFARVLEDAGVYKRTPEGQAAFLRFVEFVGLAI"
     gene            complement(13635..14807)
                     /locus_tag="U1335_000839"
     CDS             complement(13635..14807)
                     /locus_tag="U1335_000839"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HEM5231335.1"
                     /translation="MNTEQLKQAFLDVFGQEADATFFSPGRINLIGEHTDYNGGHVFP
                     AAITLGTYGVARKRDDQVLRFYSANFEEVGVIEVDLNNLVFDKADHWTNYAKGVLKFL
                     QEAGHSIDIGMEVFVYGNIPNGSGLSSSASLELLIGIIAEELYGLELTRLDLVKIGKQ
                     TENHFIGVNSGIMDQFAIGMGADQRAIYLDTNTLEYELVPLDLGDHVIVIMNTNKRRE
                     LADSKYNERRAECEKAVEELNVVLNIQTLGELDEWTFDQYSYLIKDENRIKRARHAVL
                     ENQRTLQARKALEEGDLGTFGRLVNASHVSLEHDYEVTGLELDTLAHTAWEQEGVLGA
                     RMTGAGFGGCGIAIVHKDKVDAFTENVGKTYTEVVGYEPSFYVAEIAGGSRVLSRK"
     gene            14940..15938
                     /locus_tag="U1335_000840"
     CDS             14940..15938
                     /locus_tag="U1335_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5231336.1"
                     /translation="MVTIKDIAEKAQLSSATVSRVLKGDLTLSVSQETRDRIFNLAQD
                     LGYTKHIKKQAPQQKGPIGIVQWYTESEELADLYYYSIRASIEQTASLLGYQIVRSFN
                     DLTNPLLQEVDGIIAVGKFSSGQIAELTNLSSKLIFVDSDTLTEGYSCVTTDFEHSVQ
                     TVIDHFHSQGLTDIGLLVGQEETTDGHQLPTDPRLTAFRDYLDTLGMLQEDYIYQGKF
                     STQSGYKLMSQAIEDLGNKLPPAFFMANDTLAVGALRALQERQIAVPERVQLITFNDT
                     AITRQVYPALSSISVFTEEMGQEAMQLLDRVIASPQPHHPRKIKLGTQLVIRESSY"
BASE COUNT         4486 a         4181 c         2993 g         4342 t
ORIGIN      
        1 cctctacctg tttctgaact ttagaatcat cagctgataa attcttcatt tttccaaatt
       61 ccatcataat accagacatt tctgaactta tctgagcaaa cccttcctga tttgtcttag
      121 cagaaaattc ctgaaaagct gtggtattac cccatctttc tttagcttcc tcctggaaag
      181 ccaacaaatc cgacttatca aacacttcaa aattcatgta attttctccc ttctgctgta
      241 aagacttggc atgctttatg actttttcca agtgtttctt tttcaactcc agtaatctaa
      301 tctggtcttt caaagccgct tctctgtcat acgccgcatt ccctacaatt tttttaattt
      361 ctttgagagg aaattccaat tcacgaaaaa gtaagatttc ttgcaacttt tcaaacgcct
      421 cgttatcata ataacgatat ccgttttccg caataaaact aggtgtcagc aaatttattt
      481 catcgtaata atgaagtgcg cgcacactga tacctgaaag ctgactcatt tccttcactg
      541 ttttcatggg taatctcctc tcataaatag cagtataatc tatgacccaa cgttagagtc
      601 aaggaaaaaa ttacattttt ttcagccgat tctccacaat agcaatctca ttctcttgac
      661 accagtccag tacaagttct ttgtaacatt gtgtttcaaa ggcataccat tcttccaaac
      721 ggtcacatct ctctaactca ttcttaaaac gtctaaaagc accgcgccct cgaatagctc
      781 gagacagacg gccagacaag tctccatcag tcaaatcaga aatatagagt tccataaatg
      841 tgtaaggatt gaagtcataa taggtcggca gccttacaaa ccgtccagcc acatcctcct
      901 caatctcctc ttctaaacca tcacgggatt caattctgaa ctccccaaca gacagataga
      961 ccaattcgtc tatgtgacta tcataatagt acctatcacc ttgactaatc atctgcaacg
     1021 aatcaaccac atcttgaaac caaactgcca tatcctacca cctcactgca tctaattcct
     1081 ctatcatggc tttgcgtcgc ggatactgga ctttccacga ggtgcgaaga cttgcactca
     1141 ccacttttcc atcaggtaaa cctgcaattt ttaccaaata ccctgctaac tgacgatagc
     1201 ggcttcgact actagccaca tccatctgct gacaaagagc ttgagcgtag gcatctcgta
     1261 attgctcagg cagtttctct gataaatagt cttcaaatcg atccaaattt tctaaggccc
     1321 agtaacttgc tgtaatgcgg tccaataatt cctgcggtcg gtctgccaat tgcaacaatt
     1381 tcaactgctg tgaccggaaa cgaccatcct ccagcaaatc atctaagtag ctctgccatt
     1441 cttccctaga aacatagtcc cgtaactcct ctaccagctc caaatcagta tcaccagcag
     1501 agaaaatcat ctccagcaat tcttctctga ccttgtcatc ctgcccctga gaccggtaga
     1561 tgtcccgtaa ctgctggcta taatccgaca ccagtcccct atactgggca tccaggcgct
     1621 tactttcctg caagaggtga acggcacggt ctagatgctg atttgctaca gcctgggcaa
     1681 tggctagttt acgaagtcca gccacctccc aatgattggc ctggaaggtc agcaagtctg
     1741 cctcactaga gtccaactga accaacaacc tgtaacagag caaggcaaat cggtcacgac
     1801 ggaatttcca tgaccaagag gacttgtctc ctccttctat cgcttgcaag accgcttgaa
     1861 aataggtcag tttctgctca aggaaatgtt cttcttgaaa ctctgtttct acaaattcca
     1921 tgagaaggac ttctgcaacc ttataaccac ttagcttttc taagcaccag tctagtaatt
     1981 cttggacaat cttatccgga gctacagtca ataaatgctg ccagtagcca gcaagtctat
     2041 acagcagact accaatcgtt ccattggaat catccaattc ctgctggcaa atctggtgat
     2101 agaaggcatc tgatatagcc aagaaactct catactcaca cctatctagc aaaggctgga
     2161 gatactgagc catagccttt gtcacagccc gttcgtaatc cctagtctgc ctatactcta
     2221 tataccccat acgccggtcc tcaaaaggca gacccaggtc tctgatttcc tttttcacat
     2281 tttccacttg ctgagaagtt agctgggcag agaaacgcag ttgtagccga ttggctagtt
     2341 ccctatcttc ttgggctaat tcaagaacaa cagcccgtag ttgctcaact gtcagtttat
     2401 ccaggagctg ggcaagtgac acatctttgc cctcaagagc tggctggcta tctaattcag
     2461 aaatagcaaa caagactgct gccatatgct tgcagtggtt catttcttga gcatatggac
     2521 actcacacca catattgacc agctgaccgt gctcaaagct aatctccacc tcatagactt
     2581 gaccaccaat aacgtgtgca ttgtagccat cactggtctt ttgaagccct tgaacggcat
     2641 cgtctaaaaa taaactgcag cccctatcta caatgtgagg cttaaaatag tccatccaat
     2701 ttttcatgat tatttccttt gatttttcta cttaaattat acaaaaaaaa taggaaggtt
     2761 ttcaagtcaa cgacaaaaac ttcctattct ttattgcatt catctcacca ccctcaccgg
     2821 cacgcgcccg taggtctgct ctactattgc gtcagcaccc agttgataga ctgcgtctgc
     2881 ctgctgggtc aggctgtccc aaggctcttt gccgatccgc gtcaccaagt ccacccgctc
     2941 cttgacggtc ttgagatagg cctgacctcg agctgaaaag cccaatacat ggaccgcatc
     3001 tggcaaggga gcttccaccg cattgaccaa gatgtaggtc agcacccgcc gcacccgcgc
     3061 ctttgtgtag cgcttggtcg caacggcatc cactaactcc tccacggtcg ctacgctccc
     3121 aatagcagag cggatacgac tgtctagttc ttcgttgacc tgaaagacct gactgagagc
     3181 tcggtgggtc gcaatctggt agcggagcag cggaaaatag tttctccagc ttaccttggt
     3241 cgcctcttca aagagactgg cagacggtaa aaaggcacgc accaagtcca gctggtcagc
     3301 acccttgcgg atagctgtcg ccgaggcgta ggacgtttcc acctcttccg aatgaaaacc
     3361 agctccctgc cgttgaacag ggctgagctg aatgcctgtt ccagccaccg ccttagcata
     3421 agccagagcc agaatatgat ttggcgtatc acctgtgaaa gtcagcccag caaactcctg
     3481 ccacatagcc tgggtcttct gtggataaga gagatggtca ggcaagtttt tcacaaaatt
     3541 ttccatctct tccgacttat ccacatagat atccgcaatt ttctggtaat ccagcatttc
     3601 ttccgtaccg aaaaccagtt tttccacacc tagcctgtgt aaaatgctga ttgctccctt
     3661 ggcaaaatgg tcagccgact ggaccgacac taaaaagggc atctcgacaa caagatctgc
     3721 cccgtgttcc agagccatct gagcccgtgt ccacttatcc acaatagctg gctcaccccg
     3781 ttgcataaaa ttgccagaca taaccacaat tttcaagcct tccgcctgtt ccagcaggta
     3841 tttatgccct gtatgaaaag gattgtattc tgctattatc cctgaaatca tgccttaacc
     3901 gccttaaaaa accaccgctg gcttgtttct gtcggcgctt gattttcaaa gtccgcaaag
     3961 acttccacag atgcaaaacc agcttctttc aataattcca cataggtttc aatcggatag
     4021 gtccgctctt cgtgaacttc atcccgacga ataaaccgct cctcctgact gtcctcatct
     4081 ttgacaaaga aggtcaattc atgaacgatg gaatactcat gctcaccttc ataggtgtcc
     4141 cagacaaagg caaaatcctc gtagttttca tggtagctat agcctgcaaa aacttcctcc
     4201 atttgataga tggagtgaac atcaaaaagg aaggtcccac cttgattgag aactgagtga
     4261 actccttcaa agacccgcaa aacggcttct tggtctgcca tatagcacag actgtccgag
     4321 taacaggtca ccgcatcgaa atctcccaca ccttccagag ccatcatatc tgcttgcgcc
     4381 agttccatca tgacaccagc aacttctgct tttttctggg ccaattccaa catttcatag
     4441 gacaggtcaa gacctgtcac ttcaaagccc ttttgagcaa aacgtacagc ctgaatccct
     4501 gtcccacagg ccaattctaa aattgtcttg gtgtcttgtg gcaagttccg caagctaaaa
     4561 tctgtccatt tatcatacaa gctgtcatcc atgatttcat catagaccgc cgcaaaggtt
     4621 tcataagttg ccatattttt cctttcataa aaagcagcca atagactgct tcattaactc
     4681 atgctgtgtt caagaagtca tagttttgag ttgttaacaa actctttttg accagtcgag
     4741 ttctctccca cttccactat tcctcttcta aaagttctgc gacttccagg aagcttcctt
     4801 cgtgccataa tttttcaagg ttgtagaggt cacgcatttc ttctgagaag atatgaacga
     4861 ctacgcctcc aaggtccaat aggacccagc caccgttact atcgccttca acacggctac
     4921 tcttgattcc gacttccgct accttttcac ggatattttc cgcaatagca tccaattggc
     4981 gactattcat tgaactggca atcacaaagt agtctgtcag gctggtcaca ccctgaacat
     5041 caaccacaac aaggtcttca gctcgcttat catccgcagc ctgaaccacc aattttacaa
     5101 tatctagttc tttcatttta tcctcttaaa atattttcta atgtatctac ttgagcaaat
     5161 cggccatccc aaatcatttg atactgatca atcaaatctt taggcgacag atttcccgta
     5221 aaacctgtcg ttgttccatc ctttataatt gcgagttgat agccgtactc aaaggctacc
     5281 ttgaccgtcg tatcaacaca aaaattggtc gccatcccca tgatgatgag ctgctcaatt
     5341 cccttttcct gcaaataagc atgaagcccc gtttccttga aggcactgtt aaaggtctta
     5401 tcgaaaatct tctcactagc taagggtgca acaattgagt gaatctccca gtcagcagtc
     5461 cccttgacca attcctgatc atgatggcgg acatggatga cttctagccc cgcttgacgg
     5521 gcctgtgcaa ggctatcttg ccagagggct aatcgctctt caatggcata aggtttttcc
     5581 ttcactagaa ggttctgaat gtcaatgact aacaatgcag atttcatagc ttaacaccag
     5641 gtgtttccaa acggaagacc aattcccttt cttcttcact atccaagaca aaatcatttt
     5701 tctccaagag atgagccatc ttctgattgc ccttaacata agctgcaatc aaatggtcgc
     5761 agacaggatg agctcttgct tgattgatta cgacctccaa agcagcctga ccatagccct
     5821 tcccttgaaa ttcttgacca atcataaacc gccagagcat atactgctgg atgtcctcat
     5881 caatgtcaat taagacaaaa ccaaccacct gttcatccgc ccagatggca taggggaaga
     5941 catccccgtt ttctctgtaa agccaagcgt cagcgagtga acgcacgttg ggagccacga
     6001 agaccttgtc ctcctcggct actgtcaagt ccaagactgc ttgataggag ctttcatcca
     6061 cagattttaa tacaatcatc cctactcctt caaatatgca acatatccat tataggtttc
     6121 caaggtttgt ggataaatgg gaattccctt tttagctaag taagaaatcg tttgggcagt
     6181 ttcataggct actgccttgt ccaaggactc ttttgcgata cgacgcgcct cgtccacccc
     6241 aggaaaatcc cgattgggtt cgatgtagtc cgccacatag agcaccttgt ccagcaaggt
     6301 catctgccca gcaccaatgg tgtgtcgttg aatggcttgg aaaatttcct catctttcaa
     6361 accaaaatct tctgcgattt tatagacgcc aaccacaccg tgccagatat tattatccca
     6421 gttgagcagg tccctatcca aatcatactt ggcaatcaag tccagaaaga cttggtcttc
     6481 cgcttccttg gcataatcat gcaagagtgc tgccagactg gcttttttcg gatcacagcc
     6541 atattggtct gccaaggcaa gtgctgcctg ctccacaccc aagacgtgtt ggaagcgtgc
     6601 tggcttcatg gccgcacgga ttttttccaa aagatcctga cggtcaaatg tcaaatctgt
     6661 tgcaatcatt ggtaaagtcc tttttcttcg atatagtcca gaacttcatg aggcaccata
     6721 aaattcggta cccgtccttg cttgataaag ttccgtacca tgctggatga aatgtccatc
     6781 aagggcacat ctacccagat aaccggatag gacgtccccg ccttgtagcg aggacgctgg
     6841 acaccaacaa actgcaccat ctggaccaat tcatcaatcc tgtgccattt tggaaggtag
     6901 tctaccatat ctgcaccgat gataaaataa taatccgtat caggattttt ttccttcagc
     6961 aatttcatgg tgtcgtaggt atagctgaca ccacggcgtt ccagttcaat agtttcaatc
     7021 cccaagccgt caatacctgc aatagccatc ttgagcatgg aatagcgatg gtattcgtca
     7081 atggtttctt ttttatccac atgaggcgga atgaattctg gcataagcaa gacttcatcc
     7141 aacttcaact gttgacggac ctggtctgcc acaatcaaat gagcattgtg gacagggttg
     7201 aaattccctc ccaaaatccc cacttgtttg cgattggttt ctttcttttc aacctctaat
     7261 tcaaccttgg taaagggtgt taagagttca atagccatag gctctccttc ttagatttct
     7321 ttgacctgtt tggaaatttt acggttctct ttcttgctag attgtttgaa taaaatcaag
     7381 atgcgaccaa ttttttggac tgtatccaca ccgatttctt cttccaagat ttcagctact
     7441 tcgtgaatgt tttcatccgt attttgtagc aaggtcacct tgatcaattc acgcgcatcc
     7501 agcgcctgac gaacactagt tttaatctgg tcatttagac catttttccc aatctgaata
     7561 atgggtttga gactgtgtgc ctgactgttc aaaaaggcac gttgttttga agttagcata
     7621 atttattata caaagggcgt tgtaacagac tgggagactg ttacaatcgg gaaataaaga
     7681 aaacaaagtt tttccttatt gcgccgatat acttagcccg tgttcaaatc agaagacttg
     7741 aacttccttt ctctttaatt gtaaaaactg aaatcaaata cctcttatac tcaatgaaaa
     7801 ttaaaatcag actaggcgac gcaaatgcag atagaaccct actactttca cgctttcagg
     7861 tagcaggctg taaagctcca ctggagcttt acactcatca aatcaagtca acaacgtctg
     7921 cttttaattt tcgaagagta ttagataatg gccttgcgaa taaccacatc cacaccctta
     7981 ggtgcccagg cagcaatctt ggctttttca ttgacacgaa tccaaccaag tcctgagaag
     8041 accacatccg tcttctcgtt gatggtaaat tcatggcgga ccaattcagg aaattctttc
     8101 aattccttgc tggttggcgg cactaaaagt gagcccgcat gtttctggta aaattcacta
     8161 gctccctgca gtttggtgcg gtggagctgg agttcattgt caaagaaggc cgtaaagcct
     8221 tggcgttcac caaccacaaa gtcaaatcgt cccaaaccag ccaaaaacaa ggtttgttct
     8281 ggattgagct ggtaggtctt tggcttgatt tccttacgag ggctgatgta cttgagattt
     8341 ttagccgtca agtaatgggc catctggtga cggtggataa ttcctggcgt gtcatagatg
     8401 tatgaaccat catccagagg aatttcaatc ttatccagcg tcgttccagg gaaacgtgaa
     8461 gtcgtaatga catccttgtc ccctgtgatt tcttgaataa tagcgttaat caaggttgac
     8521 ttgccgacgt tggtcacgcc gaccacatag acatcccgtc ccttgcggta ctgttcaatc
     8581 ttctcaatca aatctttgat ggcctgcttg ttttgggcag aggtcaagac cacatcaact
     8641 ggtcgcatgc cgatttcatg tgcccgctcg gtcaaccact gagtaacctt tcctgtcttg
     8701 acagacttgg gtaaaatgtc ctgcttgttg ccgaccaaaa gcacgtcatt tccagaaata
     8761 aagcgaggca agcctggaat gaccgaacca ttgaagtcaa aaatatcaat gacattaacc
     8821 accaaggcat cgctttctcc tacgctatgg aggagtttca agaaatcgtc atccgagata
     8881 ttgacatctg aaatctcatt gtaatggcgc aaacggaaac aacgttggca gtagagttgc
     8941 cctgtttcca agcctttttc tagggctgat tgaggtgtaa atccagcgac agccttgtct
     9001 agcgtctgaa tctgagcacc acagccgata caaaataatt cttccactta catctccctc
     9061 ttgtagtcta tcgctccata tttagcgatg atttttttca tggtccgtcg ctcacgccaa
     9121 cggttaatct gcgtattgat agagtcagtc tgaatcaagg gtttgaccaa gacagacttg
     9181 agaccagctc gcttagcagc ccgaatatcc gtcatcagct gatcgccaat cataattacc
     9241 tcatacggct ggacatcaaa gcgtttcaaa gcacggttaa tcccaaaggt gaaaggcttg
     9301 agagcgaagg cttcaaattc aatcccaaat ttttcaaccg cccgtttgac acgttcgtat
     9361 ttattgttag acaccaccac aacaggaata cctgcgtcct gcaaatcatg taaccactgg
     9421 cgcatctctg gcgtaccatc gggattgttc caagcaatca aggtattatc caagtcaaca
     9481 aacactactt ttatgccatg ttttttcaag ctttcgacgg tcacgtcata aaccttttcc
     9541 aaggcaaaat ccggcatgta attttctaaa ctcactgtcg tctccaaagt tttttatcag
     9601 acaattatac catttttcta ggaaaaaagc gaatagatag ccaaaaggaa aacacccggt
     9661 ggaaccgagt gcctattcta cgaacctatt tgctttctaa aatccaatcc ttaggaatga
     9721 aaatcatatg ggtcaacaac caatcaatat ccagtgagta ttttgaaaag gcaaacccaa
     9781 tctcctcaac accagaatca tcctcatcca tgcccaaaat cgtcgtcgca tgaccataat
     9841 cagcatggct atcatcaaag aggcgccaag ttagagcctt gtaaaccaat tttttggcat
     9901 catagagcgt atacacctct cgatattctg aaaaggctaa acagtccttg cctttgggtt
     9961 cgacaccctt aagttgagca atagcaatca agctatcata gttgtgataa cggagggagc
    10021 tactcaagga ttgagccaaa ctaaccgcat aatccaaggc caaatcactc acttccacag
    10081 ctacagttcc caactgttcc cgcagtggat tgagcaaatt cgcagcaaag cgagccaact
    10141 cttcacggat ctcttgaggt aaattctcta tatcttccag aataacctcc ctatcctgct
    10201 cagaaccctt gtagatattg atgtctagcc cctgatcacc cagtttttcc agttcagaat
    10261 caaaacctgt tttccctgct cgaacatatt gagcgagagt ttcatagtaa ccttctggca
    10321 agatgatacg ttctaaatta tcagctcttt caatgattgt catagatttc ttccccccta
    10381 tgcttgatat tcttattgta acaagataag gggaaattgt aaaccttttc aacttttatt
    10441 acatacttat aagaagtgta aggatttcat atgtcataac ctaccaaaac aatcttgtcc
    10501 catgaacttg gtcaatagct agtttttcta gtaaagtcgg cacattgtcc acagtcaatc
    10561 ctccaccaat caagatttca attttacctt gtgcataggc gacaatttcc tgtaaccact
    10621 ccacattgtt caaggcagac cccgtcagac ttccacgcgt caaaatccgt gtcactccat
    10681 gctctgccag ccaatcaaga gcctcaaatt ggcgttcgcg aggaatttgg tcaaaagcca
    10741 tgtgaaagac aatctgacag tcctgcgaaa cagcaaacag tctttccaag gctggttcgt
    10801 ccaaccaatt ttcctcggtt aacaaaccat aaaccagacc atctgacccc agttcaatcg
    10861 ctgctttaca atcttcaacc atcatttcaa cctctgcttc atcgtagcaa aaatctccac
    10921 cgcgagggcg aatcatggtc atgactgttg catcctgctc atgcgctagt tggcaaacat
    10981 atttgattac agcatagctc ggtgtcgtcc ctccgactgc caaattatcg cagagttcaa
    11041 tccgctgggc acccattgag atagctttgg caagatctac gtggttttcc gaacaaaatt
    11101 cttttatcat tgcaatttcc tcttatgtct tttactttag tatatcaaaa aagagtatat
    11161 taaccaatac tcttctctga aataataata tcctttaatg aaataagaag aacagctcct
    11221 aatatcaagg ccatgcctag aaaatcaatt ggataaaaac gttcattgac caaccatacc
    11281 gcaaaaaata ctgaggcgat tggttcgata gaagccaata gactaccatt gacaggacca
    11341 accatactga cccctttgag aaaggccgta taggcaaaaa tggttcctac tccaacaatc
    11401 ccaaataagc ccaatagact accaccatca agcggtagat tgccctgcca ggtctgtaaa
    11461 ccaaaagtaa ccatcaaccc tcccatcaac atgcccagac caatgactga caaactacca
    11521 tactggtcaa tgacttgggc aggtaggata atatagagag cataggtcag ggctgagaaa
    11581 agtccccagg ctaaaccaag cggggtaatc gctagttccg tcaactgtcc atgggttgca
    11641 ataaaaaaag ttcctacaat cgccaagaca atcgaaatca cttcaacccc tgtcggcctt
    11701 tgcctatctt tcaagcaggt ataagctagc actaagatag ggcagagata ttgaagaact
    11761 gttgccgttg ccgcatttgt ataagcaatg gcctgtaaat aagccagctg attgagggct
    11821 agaccaaaca aggcaaaaag agatacagct atcacggcgc gtccattttt caagagtgcc
    11881 agcaaatttc tcctagctat cacagcacac aaaccgagta aaacaagacc tgaaaccatc
    11941 aggcgcatgg aggtaatcaa ctgtacagac atgcctcgtc cgattaaata ctgtccactc
    12001 actccagaca agccccaggc tatacctgct attaatgtaa tcagtgtccc aaatctcttt
    12061 tccgccatca tatctccttc tcacactatg aatactttca ttataccaaa aagagtagga
    12121 caccgtccca ctctttctta catttatatt gctaaaccga caaactccac aaagcgtaga
    12181 aaggctgcct gtccttctgg agttcgtttg tagacccctg catcttccaa tacacgcgca
    12241 aaaatttgtc ccactgactc acgaacaact tgttcgacat tttcttccgt cacgtctggg
    12301 tgagctgttt tcaggctttc cgcccaaggc tgatgatagt cagccacctg actatcttga
    12361 cccagtaaga atttttctac ttcagccaat tctgccttta aacgtggggg taaaatcgct
    12421 aagcccatga cctcaatcaa gccgatattc tctttcttga tatgttgcac atctgggtgt
    12481 gggtgataga tgccattcgg aaactcttct gaggtctgat tgtcgcggag aaccaaatcc
    12541 agctcgtaca agtctcctcg tttccgagca atcggggtga tggtatgatg gggagttcca
    12601 tccgtctcag ccttaatctg aacgctatca tctgagtagc tccgccattt ttccaaaatc
    12661 ttagttgcta aaccaagaag agatggctta tctgctgaac tcaagcgaat caccgacata
    12721 ggccacttga caatgcccgc cgaaacggac tcaaagccgt cgaagaccag ctgacgctca
    12781 atcggtgcct tttccatggc aaaactgtgc cgcccacctt gatagtgatt gtgggtcaag
    12841 atagagccac ccgagatagg gaggtcagag ttggaaccga caaaatagcc tggcaataaa
    12901 tccaacaagt ccaagagctg ctcaaatgtt cgcggactga tgaccatcgg cacatgctct
    12961 tggttcaaga aaatagcatg ctcattgtag taagcatagg gcgaatactg gaagccccac
    13021 ttttcctgac caagatccaa gcgaataatg cggtgattgg cgcgtgcagg atgattaatc
    13081 cgaccctgat agccctcatt ttccatacag agtaggcatt tgggataatt gcttgcttca
    13141 gctttcgtag cagctgcaat agacttggga tccttctcgg gtttggacag attaatcgtg
    13201 atttccaaat ccccatactc tgtcgaaact ggataataga tatttttcgc aatcgcagcc
    13261 atcttgatat agtcattgcg cttgctcaat tcatagaagt caccaatcgc ttgctctgga
    13321 ctatcctgat aggtctgcca aaaatcgcga ttgacctgac tcggactcgg agtcatcaaa
    13381 tccatcaaac aagccccaac catgtcctgc tcttccaata attcacccac aaaaccagtt
    13441 ccaactccat gagccaataa ttcttccttg agttcaatca agtctgttag ctctgtttgg
    13501 acagtcaaaa cttgctcccc aaccaaggct aaaacccgat ttcgcaggta aagagcatcc
    13561 atttcctcaa aatcactgtt ggcaataacc tgctcaacaa aacgatctac caatccagtc
    13621 atcatttctc caatctattt acgagataaa acgcgagagc ctccagcaat ctccgctaca
    13681 tagaagctag gctcatagcc aaccacttca gtataggtct taccgacatt ttcagtaaag
    13741 gcatccacct tatctttgtg gacaatggca ataccacaac caccgaaacc agctcctgtc
    13801 atacgggctc cgagaacacc ttcttgttcc caagcagtat gtgccaaggt atccaattcc
    13861 aaaccagtca cttcataatc atgctccaaa gaaacatgag aagcattgac caaacgacca
    13921 aaggtgccca aatctccttc ttccaaggcc ttacgcgcct gcaaggtccg ttgattttct
    13981 aagacagcat ggcgggcacg cttgatgcgg ttttcatctt tgattaagta actatattgg
    14041 tcaaaggtcc actcatccaa ctcacccagg gtttgaatat tcaagactac attcaattct
    14101 tcgactgctt tttcacattc cgcacgacgc tcattgtact tagaatccgc caattcacgg
    14161 cgtttgttgg tgttcataat cacaatcaca tggtcaccca agtcaagtgg caccaattca
    14221 tactccaagg tattggtatc cagataaatg gcacgttggt ccgctcccat accgattgca
    14281 aactggtcca tgatcccaga attgacaccg ataaaatgat tttccgtctg tttgccgatt
    14341 ttcaccaaat caagtcgcgt caattcaagt ccatacaatt cttctgcgat aatgccaatc
    14401 aagagttcca gagaagctga tgatgacaag cctgaaccat ttggaatatt accgtacaca
    14461 aagacttcca tacctatatc aatgctgtgc cctgcttctt gcaagaattt gagaacaccc
    14521 ttggcatagt tggtccagtg gtccgccttg tcgaagacca agttgttcaa atccacctca
    14581 atcacaccaa cttcttcaaa gttagcagaa tagaaacgta aaacttggtc atcacgtttg
    14641 cgagcaaccc cgtaggtccc caaggtaata gccgcaggga aaacatgacc accgttgtag
    14701 tctgtatgct caccaatcag gttaatccga ccaggtgaga agaaagtcgc atccgcctct
    14761 tgaccaaaca catcgagaaa ggcttgcttg agttgttctg tgttcatagg aacctccttg
    14821 gttttgtaat cgttttcttt tattgtacaa cttaacaata taaaagtcaa tatatttact
    14881 aaaaatttac taattttatc atttgtgcta tactagatac aaatagatag gagaatccca
    14941 tggttaccat taaagacatc gctgaaaagg ctcaattatc ctctgccacc gtttcccgcg
    15001 ttctcaaggg agacctgacc ctatccgtca gccaagaaac ccgcgaccgc attttcaact
    15061 tggcacagga cctgggctac accaaacaca taaaaaaaca agcacctcaa caaaaaggcc
    15121 ccatcggcat tgtccaatgg tacactgaaa gcgaagagct ggctgacctc tactattatt
    15181 ccatccgagc cagcatcgag cagaccgcta gccttctcgg ctaccaaatc gtccgctcct
    15241 tcaacgacct gaccaatccc ctactccaag aagtggacgg catcatcgca gttggtaaat
    15301 tttcttctgg gcaaatagca gagctgacca acttgtcttc caagctgatc tttgtggatt
    15361 ctgatacact gacggaggga tactcctgcg tcacgactga ctttgaacac tctgttcaga
    15421 cagttattga ccacttccat tcacaaggcc tgacagatat tggcctccta gttggacagg
    15481 aagaaaccac agatggtcac caactgccaa cagacccccg cctgactgcc tttcgtgact
    15541 acctggacac cttgggcatg ctccaagaag actacatcta ccaaggaaaa ttctcaaccc
    15601 agtcaggata taagctgatg agccaggcaa ttgaggacct aggcaacaag ctaccccctg
    15661 cctttttcat ggccaatgat accctggcag tcggcgccct acgtgcttta caagagcgtc
    15721 aaatcgccgt accagaacgg gtccaactca tcacctttaa cgatacagcc atcacccgcc
    15781 aggtctatcc agccctgtct tccatcagcg tcttcaccga ggaaatgggc caggaagcca
    15841 tgcagctgct ggaccgtgtg attgctagtc cgcagcccca ccatccccgt aagattaaac
    15901 taggtaccca gctggttata cgggagagtt catattgaaa gtgtataaga aaaatcttcc
    15961 tactttttaa agtaagaaga ttttttaagt ggatatacac ga
//
LOCUS       DASGAC010000034        15867 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.034, whole genome shotgun sequence.
ACCESSION   DASGAC010000034 DASGAC010000000
VERSION     DASGAC010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15867
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.034"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            48..1613
                     /locus_tag="U1335_000841"
     CDS             48..1613
                     /locus_tag="U1335_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding
                     protein/permease"
                     /protein_id="HEM5231337.1"
                     /translation="MKRKLSIFLLTLIAVFSVTTGVRADEYLRVGMEAAYAPFNWTQE
                     DDSNGAVPIEGTNQFANGYDVQVAKKIAASMDKELLVVKTKWEGLVPALTSGKIDMII
                     AGMSPTEERKKEIAFSDSYYTSIPTLVVRSDSQYANATSLEDFAGAKITAQQGVYLYD
                     LIDQIEGANKQTAMGDFSQIRQALESGIIDAYVSERPEGRTAEAANKAFKMVELADSF
                     ETNAEDVTIAVGMRKDDERIAQVNEVLATISEEEQIALMDDMIENQPVEEASEGETPS
                     FFAQVWNIVVNNWQQLLRGTGMTLLISILGTIIGTAIGLLIGVFRTAPKAANKALAIG
                     QKVLGWIINIYIEIFRGTPMIVQSMVIYYGTAQAFGLNLDRTLAAIFIVSINTGAYMS
                     EIVRGGIFAVDKGQFEAATALGFTHNQTMRKIVLPQVIRNILPATGNEFVINIKDTSV
                     LNVISVVELYFSGNTVATQTYQYFQTFTVIAIIYFILTFTVTRILRAVEKHFDTDTYT
                     TGANQMQVEVPHD"
     gene            1606..2349
                     /locus_tag="U1335_000842"
     CDS             1606..2349
                     /locus_tag="U1335_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002886432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5231338.1"
                     /translation="MTKNVILEIKNLKKSYGQNQVLKDISISVEKGEVISIIGSSGSG
                     KSTFLRSINLLETPTEGQILYHGQDVLAKGYDLTTYREKLGMVFQSFNLFNNLNVLEN
                     AIVAQTTVLKRDRAEAEKIAKENLNKVGMTEQYWQAKPSQLSGGQKQRVAIARALSVD
                     PEVILFDEPTSALDPEMVGEVLKTMQDLAKSGLTMLIVTHEMEFARDVSDRVIFMDKG
                     VIAEEGSPQQIFENPQEERTREFLQRFLG"
     gene            complement(2477..2686)
                     /locus_tag="U1335_000843"
     CDS             complement(2477..2686)
                     /locus_tag="U1335_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231339.1"
                     /translation="MTSYEKVAAVVGWVREKKITGYRISKETNAREMSVIALAQGRAK
                     IDNISFATALGLIDFYDKNHKKFEN"
     gene            complement(2772..3674)
                     /locus_tag="U1335_000844"
     CDS             complement(2772..3674)
                     /locus_tag="U1335_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEM5231340.1"
                     /translation="MVLGPIVFIGSFLFFVLIALILIASGLYVVKQQTVAIIERFGKY
                     QKTSTSGINFKIPFGVDVIAARIQLRMLQSEIVVETKTQDNVFVTMNVATQYRVNENN
                     VTDAYYKLMHPEAQIKSYIEDALRSSVPKLTLDELFEKKDEIALEVQKQVAEEMSTYG
                     YVIVKTLITKVEPDAEVKQSMNEINAAQRKRVAAQELAEADKIKIVTAAEAEAEKDRL
                     HGVGIAQQRKAIVDGLADSIRELKESNVSLSEEQIMSILLTNQYLDTLNNFAQGGNQT
                     IFLPGNPEGVEDIRTQILSSLRAK"
     gene            complement(3684..4934)
                     /gene="ilvA"
                     /locus_tag="U1335_000845"
     CDS             complement(3684..4934)
                     /gene="ilvA"
                     /locus_tag="U1335_000845"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019322143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase IlvA"
                     /protein_id="HEM5231341.1"
                     /translation="MITAKNVEQAYSVLKRVVVRTPLDYSRYLSEKYGATIYLKRENE
                     QRVRSFKIRGAYYAISQLTDDEKSRGVVCASAGNHAQGVAYTCQEMQIPATIFMPITT
                     PQQKIGQVKFFGGDYVEIRLVGDTFDESAKAAQDYTQESGKTFIDPFDDENVQAGQGT
                     VAYEILEEAEEQTISFDQILVPIGGGGLVAGVSAYLKEHAPEIKIVGVEASGARSMKA
                     AFDKGRPVKLDQIDKFADGIAVQKVGKSTYEVARKYVDRLIGVDEGWISGTILDLYSK
                     LGIVAEPAGAATIAALEVVKDQIKGQTICCIISGGNNDINRMPEMEERALIYEGIKHY
                     FVVNFPQRPGALREFVNEILGPNDDITRFEYIKRANKGTGPVLIGIALGDKKDYAQFI
                     SRLEEFDPQYINLHENDSLYKMLV"
     gene            complement(5231..6253)
                     /gene="ilvC"
                     /locus_tag="U1335_000846"
     CDS             complement(5231..6253)
                     /gene="ilvC"
                     /locus_tag="U1335_000846"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006145054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEM5231342.1"
                     /translation="MTVTMQYEKDVTVAALDGKRIAVIGYGSQGHAHAQNLRDTGHDV
                     IIGVRAGKSFDKAKEDGFETFEVAEAAKQADVIMILAPDEIQADLYNEEIAPNLEAGN
                     ALGFAHGFNVHFEFIKVPADVDVFMCAPKGPGHLVRRTFEEGFGVPALYAVYQDATGN
                     AKHIAMDWAKGVGSARVGLLETTFKEETEEDLFGEQAVLCGGLTALMQAGFEVLTEAG
                     YAPELAYFEVLHEMKLIVDLVYEGGFKKMRQSISNTAEFGDYVSGPRVITDQVKENMK
                     AVLADIQSGKFANDFVNDYKAGRPRMEAYRKEAENLEIEKVGAELRKAMPFVGRNDDD
                     AFKIYN"
     gene            complement(6380..6856)
                     /gene="ilvN"
                     /locus_tag="U1335_000847"
     CDS             complement(6380..6856)
                     /gene="ilvN"
                     /locus_tag="U1335_000847"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002927678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEM5231343.1"
                     /translation="MRRMLTAKLRNSSGVLNRFTGVLSRRQINIESISVGPTEVDGIS
                     RVTVIVDVASHDEVEQIIKQLNRLIDVVRVRDLTDIPHLEREVILVKISAPPTKRAEI
                     LAIIQPFRANVVDVAPHSITIQMTGDGDKIDALLRVIQPYGIKNIARTGATGFSRD"
     gene            complement(6849..8552)
                     /locus_tag="U1335_000848"
     CDS             complement(6849..8552)
                     /locus_tag="U1335_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019803125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEM5231344.1"
                     /translation="MQEIQLDQPRSGSYLILDTLHQLGVDLVFGYPGGAVLPLYDAIY
                     QYEGIQHILARHEQGAVHEAEGYAKSSGKVGVAIVTSGPGATNAITGIADAMGDSVPL
                     LVFTGQVATRGIGKDAFQEADVLGMTMPITKYNYQIRDTADIPRVITEALHIATTGRP
                     GPVVIDVPKDIQERVVDFYHDPTVQLPSYQPTVEPNGLQVKKILKQLSQAQKPVILAG
                     GGVNYADANKELVAFAERYRIPVVSTLLGLGAMPIEHELSLAMGGMHGSYAANMAMDQ
                     ADYIINIGARFDDRLTGNPTTYAPNATVAHIDIDPAEIGKVVKTAIPVVGDAKATLKA
                     LLALETVETGYADWTAQVLENKRRAPFWYDEDEKVIKPQAAIELIGQLTQGDAIVVTD
                     VGQHQMWAAQFYPYKHARQLVTSGGMGTMGFGIPAAIGAKLANPDKEVIIFVGDGGFQ
                     MTNQELAILNGYGVPIKVVLINNHSLGMVRQWQESFYEKRRSQSVFDDEPNFQLLAEA
                     YGISHYSFDNPATLSEDMKVILEDKPMLIEVHISNREHVQPMVPAGKSNAEMLGVKFN
                     A"
     gene            8778..9830
                     /locus_tag="U1335_000849"
     CDS             8778..9830
                     /locus_tag="U1335_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glycosyltransferase family 2/GtrA
                     family protein"
                     /protein_id="HEM5231345.1"
                     /translation="MYYVVIPAYQPDEKLIQLLEIMKNRLNCQVIVVDDGSTGASKNI
                     LEIAKTYAIVLHHDVNKGKGQALRTAFSFIQDLRKPGVVVTADADGQHAVNDIDRVAR
                     AAMNLPSRLILGVRQFTKDIPFRNRFGNKLTRVLFRLQTGVNVSDTQTGLRGFHTDLI
                     PFMLDIEGDRYEYEMNMLTQASQRYKITEVPIQTIYIDDNASSHFRPIKDGLLIYKNL
                     FKFALASFGGFLVDYGVYALALLLLTSLPTALRLLVTNTIARICSATCNFALNKKLVF
                     NNEESIAQTGAGYFTLALVLFLCDTALLYLFHQILGLNLYIVKLAVGIFLFLTSWFVQ
                     KNIIFKERKSFSHEIA"
     gene            9817..10752
                     /locus_tag="U1335_000850"
     CDS             9817..10752
                     /locus_tag="U1335_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002918105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HEM5231346.1"
                     /translation="MKLLKKPFAYASIFGMLLTGGFTYSMLKTFVLSEAITTVAASNA
                     TANSQNTATSSSSTAATTATNVSTTDTSYTDDNIQINLETITTNNTTVYVADIQVSSP
                     EYLKTALAQNTYGTNVTAKTSETAAANNAILAVNGDYYGANSTGYVIKNGVLYRDTVR
                     DNAAYGDLAIYADGSFEVIYENEITAQELIDKGVVNLLAFGPSLVENGEIVVDTSTEV
                     GRAMSSNPRSAVGIIDENHYIIVVADGRTSESQGLSLYQLAEVMKQYGAQTAYNLDGG
                     GSSTLYFNGQVINNPTTNGNTISERAVSDIVYIGY"
     gene            10727..11143
                     /locus_tag="U1335_000851"
     CDS             10727..11143
                     /locus_tag="U1335_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231347.1"
                     /translation="MTLSTSVTNSTTRVSRTFISYLAITAFLFIFSRIYESLSYGEVS
                     VFMHYMFCVTLIGGTVLLGLLQLIPTLSRLSYNLWNSGVATITAGCLLRGIINLSGRS
                     TTLDQPYWYIGVGFLVLSLVGLFINPSASNHRKTTT"
     gene            11301..13016
                     /gene="ilvD"
                     /locus_tag="U1335_000852"
     CDS             11301..13016
                     /gene="ilvD"
                     /locus_tag="U1335_000852"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEM5231348.1"
                     /translation="MTEKETLKNLRHRSSVYDSMVKSPNRAMLRATGMTDDSFEKPIV
                     GVISTWAENTPCNIHLHDFGKLAKEGVKDAGAWPVQYGTITVADGIAMGTPGMRFSLT
                     SRDIIADSIEAAMGGHNVDAFVAIGGCDKNMPGSMIAIANMDIPAIFAYGGTIAPGNL
                     NGKDIDLVSVFEGIGKWNNGDLTAEEVRQIECNACPGPGGCGGMYTANTMATAIEVMG
                     MSIPGSSSHPAESPEKKADIEEAGRAVVRMLELGIKPSDIMTREAFEDAITVTMALGG
                     STNATLHLLAIAHAANVDLTLEDFNDFQERVPHLADLKPSGKYVFQDLYNVGGVPAVM
                     KYLLKNGFLHGNRITCTGKTVAENLENFADLTPGQDVIMPLENPKRADGPLIILKGNL
                     APEGAVAKVSGVKVRNHTGPAKVFDSEEEAIEAVLTDEIVDGDVVVVRYVGPKGGPGM
                     PEMLSLSSMIVGKGQGDKVALLTDGRFSGGTYGLVVGHIAPEAQDGGPIAYLRTGDLV
                     TVDQDTKEITMHVSDQEIEERKKTTVIPPLYSRGVLGKYAHTVSSASKGAVTDFWRPE
                     QTGKK"
     gene            13089..14324
                     /locus_tag="U1335_000853"
     CDS             13089..14324
                     /locus_tag="U1335_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 8"
                     /protein_id="HEM5231349.1"
                     /translation="MSNRIRKRREEKRAVVLAGDYGYIRQIETTLKSLIFHNSHLKIY
                     IFNQDIPKEWFIHYKSLLNQIGSDLIDIKLLDVPLNRDWYAGFSHITYMAFARYFIPQ
                     FVSEDKVLYLDSDIIITDSLDNLFTIDISQHYLAVVRATFGYGLGFNSGMMLINNKRW
                     KAENITTKLVEKTEQEKDSIQEGDQTILNLVLGHEAIWLDDTYNFQIGFDQGAFSYRH
                     QHLFELSLDPLPKILHYISGDKPWNTYSSGRLREVWWHYHFLAWTDILKKWENIQTMI
                     PKKHCKGKLLIITNTHWLQNIEYLVKQLPDYEFHITAFTDVANNLKQLSSQENVFIYP
                     HIIAYVLVDMIKNCDIYLDINHGSKLDELLEHVIVNQKLVLSFDNIAAPIFENYSHRQ
                     VFSYHLPENFVTAVRLLSE"
     gene            14338..14724
                     /locus_tag="U1335_000854"
     CDS             14338..14724
                     /locus_tag="U1335_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231350.1"
                     /translation="MKLNVELSRFRVKEGKTVQVDEWMAFLNEHMEDTLLTLEGEKMY
                     VETIFREVSDGLQYLYWYSVQAEGGIEVEDSESYIDKKHLEYWEECIDPNYGMVDLEP
                     QVIMIPKPIYETMEKLDKHYDETYKK"
     gene            complement(14751..15092)
                     /locus_tag="U1335_000855"
     CDS             complement(14751..15092)
                     /locus_tag="U1335_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003080443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF59 domain-containing protein"
                     /protein_id="HEM5231351.1"
                     /translation="MREDIQINERALVLSEQLVEVLESIYDPEIELDIYNLGLVYEIN
                     IDEAGFCKVIMTFTDSGCSCADTMPGELVTALKTIDGIEDAQVEIVWSPAWKMTRISR
                     LGRITLGISPK"
     gene            complement(15183..15632)
                     /locus_tag="U1335_000856"
     CDS             complement(15183..15632)
                     /locus_tag="U1335_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEM5231352.1"
                     /translation="MELKDIMHILEDMKVGVFATLDEYGNPHARHAHITAANEEGIFF
                     MTSPETHFYDQLMGDQRVAMTAISEEGYLIQVVRVEGTARPVENDYLKTVFADNPYYQ
                     HIYKDESSDTMQVFQIYAGHGFYHSLTQGHKYIFSIGQGENSEVRTL"
BASE COUNT         4636 a         3578 c         3038 g         4615 t
ORIGIN      
        1 tcagaatttt taataaaatg gtgtaatagc attttaaagg agacattatg aaacgtaaac
       61 tcagtatatt tctgctgacc ctaatcgctg ttttttctgt aacaacaggg gttcgggcag
      121 acgaatacct gcgggtcggt atggaagctg cctatgcacc atttaactgg acccaagaag
      181 atgatagtaa cggtgccgtt cctattgagg gaaccaatca atttgccaac ggatatgatg
      241 ttcaggttgc aaaaaaaatc gctgcatcca tggacaaaga actcttggtt gttaaaacca
      301 agtgggaagg cttagtccct gctctgacat ctggtaaaat cgatatgatt atcgccggta
      361 tgagcccgac agaagagcgc aagaaagaaa tcgccttctc agatagctac tacacttcaa
      421 ttcctaccct ggttgttcgt tctgatagtc agtacgcaaa tgcaaccagc ttggaagatt
      481 ttgctggcgc aaaaatcact gcccagcaag gggtttacct ctatgatttg attgaccaaa
      541 ttgaaggggc taacaaacag actgccatgg gagatttctc ccaaatccgt caagctttag
      601 aatctggcat tatagacgcc tatgtttctg aacgtccaga aggtcgtaca gcagaagctg
      661 caaataaagc tttcaaaatg gttgaattgg cagacagttt tgaaaccaat gccgaagacg
      721 tgaccattgc tgtcggtatg cgcaaagatg acgagcgtat cgctcaggtc aacgaagtct
      781 tagcaactat ttcagaagaa gagcaaatcg cacttatgga tgatatgatt gaaaaccagc
      841 ctgttgaaga agccagcgag ggcgaaacac ctagtttctt cgcccaagtt tggaatattg
      901 ttgttaacaa ctggcaacaa cttctgcgtg gaactgggat gacattactc atttccatcc
      961 tcggtacaat tatcggtact gctatcggtc tcctcatcgg tgtcttccgt acagctccaa
     1021 aagcagcaaa caaggcactt gctattggtc aaaaagtgct cggttggatt atcaatatct
     1081 acatcgaaat tttccgtggt acgccgatga ttgtacaatc catggttatt tactatggta
     1141 ccgcccaagc attcgggctc aatcttgacc gtaccctcgc agctatcttc attgtatcca
     1201 tcaacacagg tgcctacatg agtgagattg tccgcggtgg tatctttgcc gtcgataagg
     1261 gccaatttga agctgctact gctctcggat ttacccataa tcagaccatg cgtaagattg
     1321 tccttccaca ggttattcgt aacatcttac cagcgactgg taatgaattt gtcatcaata
     1381 tcaaagatac ttctgtattg aacgttatct cagttgttga actctatttc tcaggaaata
     1441 ctgtcgcaac ccaaacctat caatatttcc aaacctttac ggttattgct attatctact
     1501 tcatcctaac ctttactgtg acacgtatct tacgcgcagt tgaaaagcat tttgatacag
     1561 atacatacac aacaggtgca aaccaaatgc aagtcgaggt gccacatgac taaaaatgta
     1621 attcttgaaa tcaaaaatct aaagaaatca tacggacaaa atcaagtcct caaagacatc
     1681 tctattagcg ttgaaaaggg cgaggttatc tcaatcatcg gttcatctgg ttcgggaaaa
     1741 tcaaccttcc tccgatctat caaccttttg gaaacaccaa cagaaggaca gattctatac
     1801 cacggacaag atgttttggc taaaggatat gacttgacga cttaccgtga aaaactaggt
     1861 atggtattcc aatccttcaa ccttttcaac aatctaaatg tattggaaaa tgccattgta
     1921 gcacaaacta cggtactgaa acgagatcga gctgaggcag agaaaatcgc caaggaaaac
     1981 ctcaacaagg ttggcatgac cgaacagtac tggcaagcca aaccaagtca actctctggt
     2041 ggacagaaac aacgtgtggc cattgcacgt gccctatctg ttgacccaga agttatcctc
     2101 tttgatgagc cgacttctgc tctcgatcca gagatggttg gggaagttct caaaactatg
     2161 caagatttgg caaaatcagg attgacgatg cttatcgtaa ctcacgaaat ggaatttgcc
     2221 cgtgacgtat ctgaccgcgt tatctttatg gataagggtg tcatcgccga agaaggcagc
     2281 cctcaacaaa tctttgaaaa tccacaggaa gaacgcacac gtgaattcct tcagcgtttt
     2341 cttggataaa ctcaatctgt tccatagaag actattactt accagtttca aagctggtaa
     2401 gtttttttag actaaaaaaa gaggaattcg cagaattccc ctcctttttg gacatctcta
     2461 aatgaaacca tttagattag ttttcaaatt tcttgtggtt tttgtcgtaa aaatcaatca
     2521 aacccaaggc agttgcaaat gaaatattgt cgatcttagc gcgaccttgt gcaagagcga
     2581 taactgacat ttcacgagca tttgtttcct tactgatacg gtaacctgtg attttctttt
     2641 cacgaaccca gccaacaact gcggcaactt tttcgtaact tgtcatgaga aacccctttc
     2701 ctttttattc gtgcaattaa gtataataca gttaaaccta ttttgtcaag taaattgttc
     2761 ggtttttacc atcattttgc tctaagtgat gatagtattt gcgtccttat gtcttcgacc
     2821 ccctccggat tccctggaag gaagatagtt tgattacctc cttgtgcaaa attattgaga
     2881 gtatccaagt attggttggt cagcaagata gacataatct gctcttcaga taggctaaca
     2941 tttgattctt tcagttcacg aatcgaatct gccagtccgt ctacaatcgc cttacgttgt
     3001 tgtgcaatac ctacaccatg caagcgatcc ttttcagctt ccgcctctgc tgctgtgaca
     3061 attttaatct tgtcagcttc tgccaattcc tgggccgcaa cccgtttccg ctgagctgcg
     3121 ttaatttcat tcatagattg cttaacctcg gcgtctggct ctaccttggt aattaaggtt
     3181 ttgacaataa cataaccgta ggttgacatt tcttctgcta cttgtttttg tacctcaagt
     3241 gcaatctcat cctttttctc gaagagctca tccagggtca atttaggcac agatgaacgc
     3301 agggcatctt caatatagga cttaatctgt gcttctgggt gcatgagctt gtaataggca
     3361 tccgtcacat tattttcatt tactcgatat tgagttgcca cattcattgt gacaaaaacg
     3421 ttatcctgcg tcttggtttc taccacaatt tcactttgca acatccgcaa ttgaatgcgg
     3481 gctgcgatga catcgactcc aaatggtatt ttaaagttta tacctgaagt agatgttttt
     3541 tggtatttcc caaagcgctc aataatagcg accgtctgct gcttgacaac gtatagccct
     3601 gaagcaatca aaatcaaagc aatcagtaca aaaaacaaga aactaccaat aaaaacaatt
     3661 ggaccaagca ccataatgac ctcctaaact agcattttat aaagcgaatc attttcatga
     3721 agattgatgt actggggatc aaattcttcc aagcgagaaa taaactgcgc ataatctttt
     3781 ttatctccta gggcaatacc gattagaacc ggtcctgttc ccttattggc acgtttgata
     3841 tattcaaaac gagtaatatc atcatttggc cctagaattt catttacaaa ttcacgaaga
     3901 gcccctggac gttgtggaaa attaacaaca aagtagtgtt taattccctc gtagataagc
     3961 gcacgttcct ccatttccgg catcctgttg atgtcgttat taccaccaga aatgatacaa
     4021 caaatggttt gccccttgat ttggtccttg actacctcaa gagctgcaat cgttgctgct
     4081 cctgctggct cagcaacaat acccagctta gaatagaggt ctaaaatagt cccggaaatc
     4141 catccttcat ccacaccaat caggcgatct acgtatttcc gagccacttc gtaggtcgac
     4201 ttaccgactt tctgtaccgc aataccgtca gcaaatttat caatttggtc taatttaacc
     4261 ggacgacctt tatcaaaagc cgctttcatt gaccgtgccc cacttgcttc aacaccaaca
     4321 atcttaattt caggtgcatg ttctttcaga taggccgaaa cgcctgcaac cagaccacct
     4381 cctcctatgg gaactaaaat ttggtcaaaa ctaatggttt gctcttccgc ttcttccaag
     4441 atttcatagg ctactgttcc ctgaccagcc tgcacatttt catcatcgaa tgggtctata
     4501 aatgttttcc cactttcctg agtataatct tgtgctgcct tggctgactc atcgaaggta
     4561 tcacctacga gccgaatctc tacgtagtct cccccgaaaa atttaacctg ccctattttt
     4621 tgttgcggag ttgtaatggg cataaaaatc gtagcaggaa tttgcatttc ctgacaggtg
     4681 taggccacac cttgagcgtg gtttccggcc gaagcacaga ccactccgcg tgacttctca
     4741 tcatctgtca attgtgaaat agcataatag gctcctcgaa ttttaaaaga gcgaacacgc
     4801 tgttcatttt ctctttttaa ataaatagtt gcaccatatt tttccgacaa gtatcgacta
     4861 taatccaagg gggtacgtac taccacgcgc ttaagaacgg agtatgcttg ttctacattt
     4921 tttgctgtaa tcatagttcc attaatttct ttctatattt attgtatcat tattccctag
     4981 aaaatcctag tatttatact tatattcaag ctactagcat gttattcaac agaaaacgaa
     5041 tgtttaattt tgtaaagatc tatttatgaa caaaatgggc aaaagagctg gaaaaaacca
     5101 gctcttttat tcattttcgg agataaggga aaaagggaat gacattccct catccgccaa
     5161 ctcaaacctt aaatgtattg ccatcactca aagtaaagct gactatcccc cctatctacc
     5221 atgatagtgt ttaattatag attttgaatg cgtcgtcatc attgcgtccg acaaatggca
     5281 ttgctttgcg gagttctgca cctacttttt cgatttcaag attctctgct tctttacgat
     5341 aagcttccat acgtggacgg cctgctttat agtcatttac aaagtcattt gcaaatttac
     5401 cagattgaat atctgcaagg actgccttca tgttttcttt gacttggtct gtaatcacgc
     5461 gtggacctga tacatagtca ccaaattcag cagtgtttga gatagattgg cgcattttct
     5521 taaagccacc ttcgtagaca aggtcaacga tgagtttcat ctcgtggaga acttcgaaat
     5581 aagccaattc tggtgcataa ccagcttctg tcaagacttc aaaacctgcc tgcataaggg
     5641 ctgtcaaacc accgcagaga actgcttgct caccaaacaa atcttcttct gtctcttctt
     5701 tgaaagttgt ttccaaaaga ccaacacggg ctgaaccaac accttttgcc cagtccatcg
     5761 caatatgttt tgcattgcca gttgcatctt ggtaaacagc atagagggct ggtactccaa
     5821 aaccttcttc aaaggtacgg cggaccaagt gacctggacc ttttggtgca cacatgaaga
     5881 catccacatc tgctggtacc ttgataaatt caaagtgaac gttgaaacca tgggcaaaac
     5941 caagggcatt gcccgcttcc aagtttggtg cgatttcttc attgtaaagg tctgcttgga
     6001 tttcgtctgg agccaagatc atgatgacat ctgcttgttt tgctgcttct gctacttcaa
     6061 aagtttcaaa accgtcttct tttgccttgt caaatgactt acctgcacgc acaccgatga
     6121 tgacatcgtg ccctgtatca cgcaagtttt gagcatgggc atgaccttgt gaaccataac
     6181 cgatcacggc gatacgttta ccgtcaagtg ctgctactgt tacatctttt tcatattgca
     6241 ttgttactgt cataattttt ctcttttcta tttttatttg tagttttgga tgttcaaaga
     6301 aaatgaaggc tagactaggc gaagaactaa cgttcatcaa gccaaatcaa cgcaggatag
     6361 gttttattat cgaaaaggat tagtctctac taaatccagt cgcacccgtt cttgcgatat
     6421 tcttaatgcc ataaggctga atcacacgca gaagggcgtc aatcttatct ccatcacctg
     6481 tcatttggat ggtaatggag tgcggtgcca catcaacaac atttgctcta aagggttgga
     6541 taatcgctaa aatttctgct cgttttgttg gcggagctga aattttaaca agaatcacct
     6601 cacgctctaa gtggggaatg tccgtcaaat cacggacacg gaccacatca atcaagcgat
     6661 ttagctgttt gatgatttgt tcgacctcat cgtgactggc cacgtctaca atcaccgtca
     6721 cacgtgagat gccatctact tctgttgggc cgacggagat ggactcaata ttgatttgac
     6781 gacgagatag gacacctgta aaacgattca gaacaccaga tgaatttcgc aatttagctg
     6841 ttaacattct acgcattgaa cttcaccccc aacatctctg cattgctctt acctgctggc
     6901 accatcggtt gaacatgttc acgattagaa atatgaacct ctatgagcat tggtttatct
     6961 tctaagataa ctttcatatc ttcacttaga gtcgctggat tgtcaaaact ataatgacta
     7021 attccgtagg cctctgccaa caattggaaa ttcggttcat cgtcaaagac agattggcta
     7081 cgacgctttt catagaagga ttcctgccat tgacgaacca ttccaagaga gtggttattg
     7141 atcaatacaa ccttaatcgg tacaccatag ccattcaaaa tagccaattc ttggttggtc
     7201 atttggaagc cgccatcacc gacaaagatg attacttctt tatctggatt ggctaatttg
     7261 gcaccgatag ctgcaggaat accaaagccc atggttccca tgccaccaga tgttacaagt
     7321 tgacgtgcat gtttgtaggg atagaattga gcggcccaca tttgatgctg gccaacatct
     7381 gtcacgacaa tggcatcccc ttgcgtcaac tgaccaatta attcaattgc cgcctgtggc
     7441 ttaataacct tttcatcttc atcataccaa aatggcgccc gacgtttgtt ttccaatact
     7501 tgtgccgtcc aatcagcata gcctgtttcg actgtttcta aagcaagcag agctttcaag
     7561 gttgccttag catcgcccac tactggaata gccgttttga caactttacc aatttctgcg
     7621 ggatcaatat caatatgtgc taccgtcgca tttggcgcat aggttgttgg atttcctgtt
     7681 aggcggtcat cgaatcgcgc tccaatattg ataatgtaat cagcctgatc catagccata
     7741 ttggcagcat atgaaccgtg catccccccc atagccaagg ataattcatg ctcaatgggc
     7801 attgcaccta atccaaggag ggttgaaact actggaatac ggtagcgctc tgcaaaggca
     7861 actaattctt tattggcatc tgcataattg acaccaccac cagccaatat aactggtttt
     7921 tgagcttggc taagctgttt caaaattttc ttaacctgca aaccatttgg ctcaactgtc
     7981 ggttgataac ttggaagttg aacagttgga tcgtgataaa aatcaactac tctctcttga
     8041 atatcttttg gaacgtcaat gacaaccgga cctggacgac cagttgttgc aatatgaagc
     8101 gcctctgtaa tcacacgagg aatatctgcc gtatctcgaa tctgataatt atatttcgta
     8161 atgggcatgg tcatgcccaa aacatcggcc tcttgaaagg catccttacc gatcccccgt
     8221 gtagctactt gacctgtaaa gaccaacaaa gggacgctat ctcccattgc atccgcaatg
     8281 cctgtgatgg catttgttgc tcctggacca gaagtgacaa tggctacgcc cacctttcct
     8341 gatgatttag cgtatccttc ggcctcgtgg accgctcctt gttcatgacg agccaaaata
     8401 tgttggattc cctcatattg atagatagca tcatatagag gcaaaactgc cccaccagga
     8461 taaccaaaaa caaggtctac tcctagctga tgcagggtgt ccaaaatgag ataggacccc
     8521 gaacgcggtt ggtctagttg aatttcttgc acgaatattc ctcctctctg caaatttgtt
     8581 atctactata ttatcacaag gaagtagaat gtcaagaaat tttctgaaaa ttcctacatt
     8641 tgttcgtttt cttaacgatt tcctaacatt ttcttaagta aaacttaagt aaatcccttg
     8701 actggcttgg tttcagcttg cttttagaaa acttcagtat agtagtccca acaagaaaaa
     8761 taaatgaggt ttaggatatg tattatgtag tgataccagc ttaccagcca gatgaaaaat
     8821 taatccaact attagaaata atgaaaaaca ggctaaattg tcaggtcatc gttgtggatg
     8881 atggtagtac tggcgcatcc aaaaatattc ttgaaatcgc caaaacctat gccattgttc
     8941 tccaccacga tgtcaataaa ggaaaaggcc aagccttacg gactgccttt agctttatcc
     9001 aagatttgag aaagcctggt gtcgttgtta ccgctgatgc agatggtcaa catgctgtga
     9061 atgatataga ccgtgtcgca cgcgcagcca tgaatctacc aagccgcctc atccttggcg
     9121 tccgtcaatt tactaaggac attccctttc ggaatcgttt tggtaacaaa ctaaccagag
     9181 tcttgttccg actacaaacc ggtgtcaatg tatccgatac acaaacaggc ttgcgtggat
     9241 tccatactga cttaattcca ttcatgttag atattgaagg cgaccgctat gagtacgaga
     9301 tgaacatgtt aactcaggca agtcaacgct ataaaattac ggaagttcca attcaaacta
     9361 tttatatcga tgataatgcc agttcgcatt ttcgtcccat aaaagatgga ctgctcattt
     9421 acaagaatct cttcaaattt gccctggcat cttttggtgg atttctagtt gactacggag
     9481 tgtatgcact tgccttattg ctactcacta gcttaccaac tgctctacgc ttgttggtca
     9541 caaacacgat tgctcgcatt tgtagcgcta cctgtaattt tgcacttaat aagaaattag
     9601 tctttaacaa tgaagagagc atcgcacaaa caggcgccgg ctactttaca ctagcccttg
     9661 tcctcttcct ttgcgatacg gccctcctct atctcttcca ccaaattcta ggactcaacc
     9721 tctacattgt caaacttgca gttggtatct tccttttcct aacctcttgg tttgttcaaa
     9781 agaatattat ttttaaagaa aggaaatcat tttcccatga aattgcttaa aaaacccttt
     9841 gcctacgcat ccatcttcgg aatgcttttg acaggaggct ttacttactc catgttaaaa
     9901 accttcgtgc tttccgaggc tatcacaacg gttgctgcaa gtaatgccac agccaatagc
     9961 cagaacacag ctacttcatc gtcgtcaact gccgcaacca ctgcaactaa tgtctctacg
    10021 acggatacta gttacactga tgacaatatc caaatcaact tagagaccat cactaccaac
    10081 aacacaactg tttacgtcgc agatattcaa gtcagctcac ccgagtattt aaaaacagca
    10141 cttgcacaaa acacttacgg tacaaacgta acagctaaaa cttctgaaac tgcggcagca
    10201 aacaatgcta tcttagcggt taatggtgac tactacggag ccaactcaac gggttatgtt
    10261 attaagaatg gggttctgta tcgagacact gttcgggaca atgcagctta cggcgacttg
    10321 gccatctacg cagacggctc atttgaggtc atttatgaaa atgagattac cgcccaagaa
    10381 ttgattgaca agggcgttgt caacctctta gcatttggtc catcattggt cgaaaacggc
    10441 gaaattgtcg tcgatacttc aacagaagtc ggacgtgcaa tgtcatccaa ccctcgttct
    10501 gctgtcggga ttatcgatga aaatcattat atcatcgtcg tagcagatgg acgtacgtct
    10561 gaaagccaag gactttctct ctatcaattg gcagaagtta tgaaacaata tggtgctcaa
    10621 actgcctaca accttgatgg cggtggttca tccactcttt actttaacgg tcaagttatt
    10681 aacaacccaa caacaaatgg aaatactatc tcagaaaggg cggtgagtga cattgtctac
    10741 atcggttact aattcaacta caagagtttc aagaacgttt atctcctact tagcaataac
    10801 agctttcctg tttattttca gtcgaatcta tgaaagtctc agctatggcg aagtctctgt
    10861 ctttatgcat tatatgttct gtgtgaccct gattggcgga actgtgctac tcggtttgct
    10921 gcaacttata cctactcttt cacgtctctc ttataatttg tggaattctg gcgttgcaac
    10981 tattacagct ggttgtcttc tccgaggcat tatcaaccta tctggacgtt caactacctt
    11041 agatcaacct tattggtaca tcggcgtagg attcttagtt ctatcgttag tcggtctttt
    11101 catcaatcca tccgcaagca atcatcgaaa aacgaccact taatctacaa attaattgca
    11161 agggcactta acatcttaga tgccttttac tgtagaatga attattgaaa aattcggaaa
    11221 tttccaatta gttatcaaat cttttatcgt ttctttcata tctatgatat aatgggtaaa
    11281 ataagatagg gagaagagta atgactgaaa aagaaacact aaaaaacctc cgtcatcgta
    11341 gctctgtcta cgattcgatg gtcaaatcac ctaaccgtgc tatgttaaga gcaacaggaa
    11401 tgaccgacga tagttttgaa aaaccgattg ttggggttat ttcgacatgg gctgaaaata
    11461 caccttgtaa catccacctt catgactttg gaaaattagc caaggaaggg gttaaagatg
    11521 caggtgcttg gcctgtacag tatggaacca ttacggtagc agatgggatt gccatgggaa
    11581 ctcctggcat gcgtttctcc ttgacttcac gtgatattat cgctgattct attgaagcgg
    11641 ccatgggcgg tcataacgta gatgcctttg tcgcaatcgg tggctgtgat aagaacatgc
    11701 ctggttccat gattgctatc gccaatatgg atattcctgc tatctttgcc tacggtggaa
    11761 ccatcgcacc aggtaaccta aatggtaaag atattgactt ggtttctgtc tttgaaggaa
    11821 tcggaaaatg gaacaacggc gacttaaccg ctgaagaagt tcgtcaaatc gagtgtaacg
    11881 cttgccctgg acctggtggt tgtggtggta tgtacacggc caataccatg gcaacagcca
    11941 ttgaagtcat gggcatgtcc attccaggat cttcttctca ccctgctgaa tctcctgaga
    12001 aaaaagcgga tatcgaagaa gctggtcgtg ccgttgtccg catgctggaa ctgggcatca
    12061 aaccatctga cattatgacg cgtgaagcct ttgaagatgc cattacagtc accatggcac
    12121 tcggtggttc aaccaacgct acccttcacc ttctagccat cgctcatgct gccaatgtcg
    12181 acctcacact tgaggacttc aatgatttcc aagaacgagt acctcacttg gcagacctga
    12241 aaccatctgg aaaatatgtt ttccaagacc tctacaatgt cggcggtgtc cctgcggtta
    12301 tgaaatactt gctcaaaaat ggtttcctcc atggcaaccg catcacctgt acaggtaaaa
    12361 ccgttgcgga aaacttggaa aactttgcag acttgactcc aggtcaagat gtcatcatgc
    12421 cacttgaaaa tccaaaacgg gcggatggcc cactcatcat cctcaagggt aacctagcac
    12481 ctgaaggtgc cgttgccaag gtttcaggcg tgaaagtccg taaccacaca ggtccagcaa
    12541 aagtatttga ttccgaagaa gaagctatcg aagcagtctt gactgacgaa atcgtagatg
    12601 gagatgtagt cgttgtccgc tatgttggac caaaaggtgg tcctggtatg cctgaaatgc
    12661 tgtcactttc ttctatgatt gtcggaaaag gccaaggcga caaggtagct cttctaacag
    12721 atggtcgctt ctctggtggt acttatggtc tggttgttgg acacatcgca cctgaagctc
    12781 aggacggtgg accaattgcc taccttcgta ctggagattt ggtaaccgtt gatcaagata
    12841 ccaaagaaat caccatgcac gtttctgacc aagaaatcga agaacgcaag aaaacaactg
    12901 ttattccacc actctactct cgtggtgttc tcggaaaata cgcccacact gtatcctctg
    12961 cctctaaagg agccgttacc gacttctgga gaccggaaca aactgggaaa aaataaaaga
    13021 actcgtaaat ccacagggag gaaactatat ggtcaaacta caagattcga cctctcctct
    13081 gacttccaat aagcaaccgc ataaggaaga gaagagaaga gaagagggct gtagttctag
    13141 cgggtgacta tggttatatc cgtcaaattg aaacaacatt gaaatccttg atttttcata
    13201 atagtcatct taaaatttat atttttaatc aggatatccc taaagaatgg tttattcatt
    13261 ataaatcgtt actaaatcaa attggtagcg atttaatcga tataaaatta ttagacgtcc
    13321 ctctaaatag agactggtat gctggttttt cacatattac atacatggcc tttgctcgat
    13381 attttattcc tcagtttgtc tccgaggaca aagtattgta tctagatagc gacatcatca
    13441 ttactgattc cctagacaac ttattcacaa ttgacattag ccaacactat ctagctgtcg
    13501 ttcgagcaac atttggctac ggactaggtt ttaattccgg tatgatgcta atcaataata
    13561 aacgttggaa agccgaaaat attactacta aattagtcga aaaaacagaa caggaaaagg
    13621 attccattca agaaggtgac caaactattt taaacttggt tttaggtcac gaagcaattt
    13681 ggttagatga tacctataat tttcaaatcg gatttgatca aggagccttt tcctatcgcc
    13741 atcagcatct atttgaactc agcttagacc ccttgcctaa aattctgcac tatatctctg
    13801 gagataaacc ttggaatact tattcttctg gacgtcttcg tgaggtatgg tggcactatc
    13861 acttcctagc ttggacagac atcctgaaaa aatgggaaaa tattcaaaca atgattccta
    13921 aaaaacactg caagggaaaa ttactcataa tcaccaatac tcattggttg caaaatattg
    13981 aataccttgt taaacagctt cctgattatg agttccatat cacagctttt acagatgtcg
    14041 cgaataattt aaaacaacta agtagccaag aaaatgtctt catctatcca catatcatcg
    14101 cttatgtctt agtagatatg ataaaaaatt gcgatatcta tcttgatatt aaccatggga
    14161 gtaaattaga tgaattgcta gagcatgtca ttgtaaatca aaagctcgtt ctctcttttg
    14221 acaatatcgc agcaccaatt tttgagaatt attcacacag acaagtcttc tcctatcacc
    14281 ttcccgaaaa ctttgttact gcagtgcgat tacttagcga gtaaaaaagg agaaaaaatg
    14341 aaactaaacg tcgaactctc ccgcttccgt gttaaagaag gcaaaaccgt tcaagtagat
    14401 gaatggatgg cctttctcaa cgagcacatg gaagacaccc ttctcactct tgaaggagag
    14461 aaaatgtatg tcgaaaccat cttccgcgag gtatcggacg gacttcaata cctctattgg
    14521 tactctgtcc aagccgaagg aggaattgaa gtcgaagatt cagaatccta tatcgacaaa
    14581 aaacatttgg aatattggga ggagtgcatc gatccaaact atggtatggt tgacctcgaa
    14641 ccccaggtta ttatgattcc aaaaccgatt tatgaaacca tggaaaaact tgataaacat
    14701 tatgacgaaa catataaaaa atgagctgct ccacgcaact cattttcttt ttatttcgga
    14761 ctgataccaa gtgtaatgcg tccaagtcgg ctgatacggg tcatcttcca ggcaggagac
    14821 cagacaatct caacttgagc atcttcaatg ccatcaatgg tcttcaaggc tgtaacaagc
    14881 tctcctggca tagtatcggc acaagagcaa cctgagtctg taaaggtcat aatgacctta
    14941 caaaaaccag cttcatcaat atttatctcg tagaccaagc ccaaattata aatatccaat
    15001 tcaatttccg gatcgtaaat agattccaaa acctctacca actgttctga caaaacaagg
    15061 gctcgctcat tgatctgaat atcttctctc atttatccaa acactcctaa aacatttata
    15121 aaaagtattg tatcataatt atttgaaata tacttgtctt atcagatgtc ttcatctagt
    15181 tttcaaagtg tacgaacctc tgaattctca ccttgaccaa tagaaaagat atacttatga
    15241 ccttgagtca agctatgata gaagccatga ccagcataaa tctgaaatac ttgcattgta
    15301 tcactagact catctttata gatatgttga taataaggat tatccgcaaa aactgtcttt
    15361 agatagtcgt tctccacagg tctggcagtc ccttctacac gcactacctg gataaggtac
    15421 ccttcctcag aaatagcagt catcgcaact ctttgatccc ccatcaattg atcatagaaa
    15481 tgcgtttctg ggcttgtcat aaagaaaatc ccttcttcgt ttgctgcagt gatatgagca
    15541 tgacgagcat gtggatttcc atactcatcc agagttgcaa aaactccaac cttcatatct
    15601 tccaaaatat gcataatatc ttttagttcc atggtatcac cccttgaaaa cacctatttt
    15661 ctaaagtata tcaaaaacaa gcgaaaatgt taagtgggat attgatagaa atggtgaaag
    15721 tgtttcatga acaactccct actgacagaa ccattaaaga aggtagctat gtttgcctca
    15781 ttttcaacct tcaaaggttc ttcaaccctt ttgatttcca attggtatgg atttgactct
    15841 gaaccgatta tgacatcaat caaaatc
//
LOCUS       DASGAC010000035        15518 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.035, whole genome shotgun sequence.
ACCESSION   DASGAC010000035 DASGAC010000000
VERSION     DASGAC010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15518
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.035"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            235..1461
                     /locus_tag="U1335_000857"
     CDS             235..1461
                     /locus_tag="U1335_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyltransferase"
                     /protein_id="HEM5231353.1"
                     /translation="MFYTYKIGVSAEEHDSFVKQSPQANLLQSSQWATVKSEWRNERL
                     GFFKDGKLVAVASLLIRRLVVPFGFTMIYIPRGPVMNYEDAELVSFVFKSIKEFALRE
                     RSVVIKFDPFIRLSSKTITGDREEELNVLAVKDRIVDLGGIWSGRVQTMSATIQPTCH
                     AVLYSESFSEESLNKRVRQNIRSARNKGIEIRIGREELLRDFSELLKKTEERKSIRLR
                     GREYYQKILNAYPENSYIVVAYLDLAKRYEQLSYLEEKLVKEAMTFTSTTRQSKIENY
                     KKETRRINTELEMIHSLIRNGSKLVPLAGTLTIDFAGTSENIYAGMDEKFKHYQPALL
                     TWVETAKYAFERGVKWQNLGGIEPTLDGGLYHFKSHLNPVVEEYIGEFDLIVSPILYK
                     IFQVLLEIRKKLRKKK"
     gene            1461..2633
                     /locus_tag="U1335_000858"
     CDS             1461..2633
                     /locus_tag="U1335_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan bridge formation glycyltransferase
                     FemA/FemB family protein"
                     /protein_id="HEM5231354.1"
                     /translation="MAFCQITKEEFLKHCEQVNEKSFFQSIEMAGLLSKRGYDVRYVG
                     FKNSQSEIVISTLLFCKKMAGGLYMELNSGPLVTDDAYLEEFYQSLKNYAKREGVLEL
                     VVKPSQAYQLFDSVGNPISEADTQLIEKMVQVGFKHDGLQTGYPNGEPVWHYVKDLQG
                     YSTTSLLQSYNKNSKRNIKNSESYGIRIRSINHKELSAFKKIIEETGARQGFEDRDSG
                     YYNSLFESFGTQADFLVAELDPKASLKQIEKEIETSARNSKQYAQQVQKLLKKQEVVQ
                     NILNQTQTAPIFLACALIIYDVNEATYLFGGSYPEFQSLSAPFLLQYEAMQRAIKRNL
                     KRYNFLGIQGIFDNSDGVLRFKQNFNGYILRKAGTFRYYPHPIKHKIIQIIKKIVK"
     gene            2663..3073
                     /locus_tag="U1335_000859"
     CDS             2663..3073
                     /locus_tag="U1335_000859"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016502986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEM5231355.1"
                     /translation="MIQPIMKDIFFLQQKSEPATQQDVQIGQDLQDTLAANAHACVGM
                     AANMIGIKKRIIIVNMGFTNLVMYNPVLISKAKPYQTEEGCLSLEGTRPTTRYQEIEV
                     EFFDASWKKISLKLTDFQAQIVQHELDHLEGIII"
     gene            3490..5589
                     /locus_tag="U1335_000860"
     CDS             3490..5589
                     /locus_tag="U1335_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEM5231356.1"
                     /translation="MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEF
                     AMYRQTGRLPQTEEVAQTQAKGQIKSDGILAKLGRNLTQDAREGKLDPVIGRNKEIQE
                     TSEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
                     GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPAL
                     SRGELTVIGATTQDEYRNTIHKNAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHH
                     NIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQHPVTDIQTLEAEMAE
                     AKQLQLEAAEKEDYEKALNEKVRIDKLQKQIDNHTEQQKVVATVNDVAQAVERMTGIP
                     VSQMGASDIERLKELKNRLSAKVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVG
                     PTGVGKTELAKQLALDLFGNKDAIIRLDMSEYSDRTAVSKLIGTTAGYIGYDDNSHTL
                     TERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTIIIATSNA
                     GFGYGMAEGEENQDIMDRIAPFFRPEFLNRFNAVIEFKHLDKDDLKAIVELLLAQVNN
                     TLAKKGIHLEVTEAAKEFLMEEGYDKAMGARPLRRVIENQIRDKVTDYYLDHVDVKYL
                     EADVVDGSIQIKEQSFA"
     gene            5772..7280
                     /gene="malQ"
                     /locus_tag="U1335_000861"
     CDS             5772..7280
                     /gene="malQ"
                     /locus_tag="U1335_000861"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019312918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEM5231357.1"
                     /translation="MTNRTSGILMHITSLPGKFGIGTFGQSAYDFVDFLVETKQTYWQ
                     ILPLTTTSYGDSPYQSFSAIAGNTHLIDFDLLVEDGLLAPEDFQDVNFGDNPEKVDYA
                     LIYQVRRPILEKAVQAFLQDDKKKAAFLEFEKANSSWLTDYAEFMAIKEYFGNKALQE
                     WEDKKVVARNEEALDKYRLELANQIDYYKVTQYFFFSQWKQLKEYANKHHIKIIGDMP
                     IYVSADSVEVWTKPQLFKLDSERKPLYVAGVPADNFSADGQLWGNPIYDWPEHEKTGY
                     NWWIYRIHESFKLYDVLRIDHFKGFSDFWQVDGKAEVAKVGTWEPGPGYNLFKAVKET
                     LGDLPIIAEDLGNIDAKARKLLADCGYPGMKILEFGFFDVTGKSIDAPHRCIPNSVAY
                     TGTHDNEVVNGWYNNLDPEQQEYVDAYSNRKPIEKVSQAMLRMLFATVSDTAIATMQD
                     VLDLGEESRMNMPSTIGGNWEWRMKAEDLTQERKDFLTKMTLLYQRGNENHD"
     gene            7273..9537
                     /gene="glgP"
                     /locus_tag="U1335_000862"
     CDS             7273..9537
                     /gene="glgP"
                     /locus_tag="U1335_000862"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002992581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan family
                     phosphorylase"
                     /protein_id="HEM5231358.1"
                     /translation="MTKFTTFAETNTSKKLADLTNEEIYLQLLNYVKEAAASKPKNTG
                     KRKVYYISAEFLIGKLLSNNLINLGVYKDIQAELAAAGKSLAQVEDVEPEPSLGNGGL
                     GRLASCFIDSMSTLAINGEGVGLNYHCGLFRQVFKKNEQEAEPNFWIENDSWLIPTTI
                     SYDVPFKNFTLKSKLDRLDILGYKKETKNYLNLFDIESVNYDLITDGISFDKTDIKEN
                     LTLFLYPDDSDKNGELLRIYQQYFMVSNAAQFLIDEAIERGSNLHDLADYAYVQINDT
                     HPSMVIPELIRLLTEKHGIEFAEAVAIVKNMTGYTNHTILAEALEKWPLEFLEEVVPH
                     LVDIIKELDALIRAEIKDPAVQIIDESGRVHMAHMDIHFSNSVNGVAALHTEILKNSE
                     LKAFYELYPEKFNNKTNGITFRRWLEFANQDLADYIKELIGDEYLTDATKLEKLLAFA
                     DDKEVHAKLAEIKHNNKLALKRYLKDNKGIELDENSIIDTQIKRFHEYKRQQMNALYV
                     IHKYLEIKNGNLPKRKITVIFGGKAAPAYVIAQDIIHLILCLSELINNDPEVNKYLNV
                     HLVENYNVTVAEKLIPATDISEQISLASKEASGTGNMKFMLNGALTLGTMDGANVEIA
                     ELAGMDNIYTFGKDSDTIIDLYDKAGYVSADYYNGDANIKRAVDFIVSDEVLALGNEE
                     RLGRLHHELISKDWFMTLIDLAEYIEVKEQVFADYEDQDSWNKKVVHNIAKAGFFSSD
                     RTIEQYNEDIWHSK"
     gene            complement(9593..10300)
                     /locus_tag="U1335_000863"
     CDS             complement(9593..10300)
                     /locus_tag="U1335_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018367901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTRA domain-containing protein"
                     /protein_id="HEM5231359.1"
                     /translation="MSKYKKVYADIKEKIEQNIWHANQEMPTENELMEIYSYSKDTIR
                     KALSLLEMDGYIQKRQGRNSIILDHNLVRKPFVSELKTVSELNRSAHHQVQTELTNLY
                     IVQGQPEVMKELEVDEKTDLYRVSRVRTIDGERLEYEISYFDRRIVPYLSKEVAEKSI
                     YQYLENDLGLEISHSRREISFRFATEEEKSLLDLAGYDMVVSVTSTTYLSNGQAFQYG
                     TITYRPDKVTFVSMAKR"
     gene            10497..11288
                     /locus_tag="U1335_000864"
     CDS             10497..11288
                     /locus_tag="U1335_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEM5231360.1"
                     /translation="MKLLTVNVHAWLEENQVQKLDILAQTIAQKQYDVIALQEVNQLM
                     TSPLVTRELRQDNYGLVLLEKLKELGIADYSYFWSNSHIGYDKYDEGIAFLTKLPVYE
                     VDAFYCSQHQDLTSILSRKIIGLTVAYGNELIDLYSCHINLPDSQEENQLENIRSIVE
                     RTSSDRLKILMGDFNTDALSNPKAYQAIRDLGLYDSYDLAEEKDRGITVEKAIDGWAG
                     HSQEKRLDYVFLNQKRQVQSSRVIFNEENLPIISDHFGVEVEINV"
     gene            11322..13490
                     /locus_tag="U1335_000865"
     CDS             11322..13490
                     /locus_tag="U1335_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HEM5231361.1"
                     /translation="MKKFLSFEFWQKFGKCLMVVIAVMPAAGLMVSIGNSIPLISPES
                     ELLIRIGNIIAQIGWGIIGNLHLLFALAIGGSWAKEKAGGAFSAGLAFILINLITGHF
                     FGVTTDMLADAAATVTTVFGTEIPVSGYFVNILGQPALNMGVFVGIIAGFVGATAYNK
                     YYNYRKLPDVLTFFNGKRFVPFVVIYRSVLVALGLAIFWPVVQTGINSFGKWIASSQD
                     TAPILAPFVYGTLERLLLPFGLHHMLTIPMNYTSLGGTYDILTGAQAGTQVFGQDPLW
                     LAWITDLINLKDAGDLAQYNDLLANVTPARFKVGQMIGSSGILMGLTLAMYRNVDEDK
                     KKKYRGMFLSSAAAVFLTGVTEPIEFMFMFAAMPLYVVYAFVQGAAFAMADIVNLRMH
                     SFGNIEFLTRTPMAIKAGIGMDAFNFIWVTALFAVGMYFIANFMIKKFNLATAGRNGN
                     YDTETTDVVSNSNVDTADANSQVVQIINLLGGRDNIADVDACMTRLRVSVKDVAQVGD
                     ENAWKQAGAMGLIIKDSGVQAVYGPKADVLKSDIQDLLESGVAIPRTEIVATETVVEE
                     AQFKGVTEAVYAVAEGQAIAITEVKDPVFSQKMMGDGYAVEPSSGNVYAPVSGIVTSV
                     FPTKHAVGILSDKGVEVLVHVGLDTVALNGAPFSTKVTDGQRVEAGDFLLVADLEAIR
                     SAGRETTIVVAFTNTAEIKSVSLGNLGQVSKDSQVATVEL"
     gene            complement(13562..14188)
                     /locus_tag="U1335_000866"
     CDS             complement(13562..14188)
                     /locus_tag="U1335_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2812 domain-containing protein"
                     /protein_id="HEM5231362.1"
                     /translation="MELKFIKSSQQRLIWIFEEYQSEGYQLVKVTPWTAAYHFEKCSR
                     IPHPVRLDFHEHIAKGEYSNYLSLFEDCGWQPIQGSRRCGIHYFQQTIEASSTEIFSD
                     TESKKAFYSRYQNYAYSYFGLFLTLFFIHYQVGLQNGYTLWNPKSWYLTPGLWERTGT
                     SFWFGFLFETPFALFRSGIIPLFFLAWSIYFLHIAEKGKKEAKKLEKY"
     gene            complement(14304..14615)
                     /locus_tag="U1335_000867"
     CDS             complement(14304..14615)
                     /locus_tag="U1335_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000827864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM5231363.1"
                     /translation="MKRNKHLPLTETTYYILLALLEPAHGYHIMQKVEDMSDGDVKIA
                     AGTMYGAIENLLKLKWICSVPSSDKRRKVYQVTATGQEIIKLETQRIQKLHHIAKELG
                     F"
     gene            14776..15492
                     /locus_tag="U1335_000868"
     CDS             14776..15492
                     /locus_tag="U1335_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015604432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5231364.1"
                     /translation="MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKKGDPDPETN
                     SALKFVIDRAKQAQVPKHIIDKAIDKAKGNTDETFVEGRYEGFGPNGSMIIVDTLTSN
                     VNRTAANVRSAFGKNGGNMGASGSVSFMFDKKGVVVFAGDDADVIFELLLEADVEVDD
                     VEAEDGTITVYTAPTDLHKAIVALKESGIQEFNVTELEMLPQSEVSLEGDDLATFEKL
                     YDALEDDEDVQKIYTNVDGF"
BASE COUNT         4820 a         2891 c         3341 g         4466 t
ORIGIN      
        1 caatttattg atcaagtggg aggagaaggt acagtagcct ttgtcagcca agcgattgtg
       61 atttattgtg gaaaataaat aagaaaagtc tagtgaaaac taggcttttt ttactgaaaa
      121 caggacaaaa tacttgacaa aatcgcctgc tatactagta tagcagggct tgacactacg
      181 ggcaagccct tcctaattag cgttaaaagt aattatgagc aaggggaata atcaatgttt
      241 tacacttata aaataggcgt ttctgctgag gaacatgatt catttgtaaa gcaatcacca
      301 caggccaatc tcttgcagag cagtcagtgg gcaaccgtaa aaagtgagtg gcgaaatgaa
      361 agactaggct tttttaaaga tgggaaatta gtggcagttg cttctcttct tatcagaagg
      421 ttggtagtac catttggttt tacgatgatt tatataccaa gaggtcctgt aatgaattat
      481 gaagatgctg aattagtatc atttgtattt aagtccatta aagaatttgc cctgcgagaa
      541 cgcagcgttg ttataaaatt cgatccattt attcgactat ctagtaaaac tataacagga
      601 gatagggaag aagaattaaa tgtacttgcc gtcaaagata ggattgttga tttgggaggt
      661 atttggtctg gtcgagtgca gaccatgtcg gctacaatcc aacctacttg tcatgcagta
      721 ttatatagcg aatccttctc agaggaatca ctaaataaac gagttcgaca aaatattcgg
      781 tcggcgcgta ataaaggtat tgagattcga attggtcgtg aggaattgtt aagagatttt
      841 tcagagctat taaaaaagac tgaggagcgc aaatctattc gcttgcgggg gagagagtat
      901 tatcaaaaaa tattgaatgc ctatccagaa aattcttata ttgtagttgc ctatttggat
      961 ttagcaaaga gatatgaaca gttatcttat cttgaagaaa aattagtaaa agaagccatg
     1021 actttcacct ccactacaag acaatcgaag attgaaaatt ataaaaaaga aacccgaaga
     1081 ataaatacag aattagaaat gatacattct ctgattcgta acgggagtaa gttagttcca
     1141 ttggctggta ctttgacaat tgattttgca ggaacatctg aaaatatcta tgctggtatg
     1201 gatgaaaagt ttaaacatta tcagcctgct ttactaacat gggtggagac agcaaagtat
     1261 gctttcgaac gaggtgtgaa atggcaaaat ttaggaggaa tagagccaac tttagacgga
     1321 ggcctttatc actttaaatc acatttgaat ccagtagtag aagagtatat tggggaattc
     1381 gatcttattg tttcgccaat attatataag atttttcaag ttttactgga aattagaaaa
     1441 aaattaagga agaaaaaata atggcttttt gtcaaataac taaagaagaa tttttaaagc
     1501 attgtgaaca agtaaatgaa aaatcatttt ttcaatctat tgagatggcc ggattactat
     1561 ccaagcgagg atatgatgtt cgctatgttg gttttaaaaa ttcacaatca gaaatcgtta
     1621 tttctacttt gcttttctgt aagaagatgg ctggtggttt gtatatggaa ttgaattctg
     1681 gaccactggt taccgatgat gcttatttgg aggaatttta tcaatcttta aaaaactatg
     1741 cgaagcgtga aggcgtactt gaattggtgg tcaagccttc ccaagcctat caactctttg
     1801 atagtgtagg gaatccaatt agtgaagcag atactcaact aattgagaag atggtgcaag
     1861 ttggatttaa acatgatggc ttacaaacag gttatccaaa tggagagcct gtttggcatt
     1921 atgtgaagga tttgcaaggg tattcaacaa cgtcgttatt gcaatcctac aataaaaata
     1981 gtaaacgaaa cataaaaaat tcagaaagtt acggtatcag gattcgtagt atcaatcata
     2041 aggagctttc agctttcaaa aaaataattg aggaaactgg agctagacaa ggctttgaag
     2101 atagagatag tggttactat aacagtcttt ttgaaagctt tggtacacag gcagattttt
     2161 tagttgcaga acttgacccg aaagccagtc taaagcaaat tgaaaaggaa atagaaacaa
     2221 gtgctagaaa ttcaaaacag tatgcacagc aggtacagaa attgttgaaa aaacaggagg
     2281 tggttcaaaa tattttaaat caaactcaga cagctcctat ttttttggca tgtgcactga
     2341 taatttatga tgtgaacgag gcaacttatc tttttggtgg ctcatatcca gagtttcaaa
     2401 gcctatctgc acctttctta cttcaatatg aggcgatgca acgtgcaata aaacgaaatc
     2461 ttaagcgtta taatttcctt ggtattcaag ggatattcga caactcagat ggtgttcttc
     2521 gatttaaaca gaactttaat ggttatattt tgagaaaagc tggtactttt cgttactatc
     2581 ctcatccgat aaagcataaa ataattcaaa ttatcaaaaa aatagtaaaa taatactata
     2641 tactttatcg aaagaggttc ccatgattca acctattatg aaagatattt tcttcctgca
     2701 acaaaagtct gaacctgcga ctcagcaaga tgtgcagatc ggtcaggact tgcaggatac
     2761 gttagcagcc aacgctcatg cctgcgtggg catggcagcc aacatgattg gtattaaaaa
     2821 gcggattatc atcgtcaaca tgggttttac caacctggtc atgtacaatc ccgtcctcat
     2881 cagcaaggcc aagccctatc agacagaaga gggctgtctg tcgcttgaag gtactcgtcc
     2941 gacgacacgc tatcaggaga ttgaagtgga gttttttgat gcttcttgga aaaagatcag
     3001 cctaaagctg acagacttcc aagcccagat tgttcagcat gaactggatc atttggaagg
     3061 gattatcatc tagtgctacc aaatctaccg tcaggtggat ttttttatca aaaagtcaaa
     3121 aaaggtcaaa caaaactatt gacttttact gaccaatggt gtaaaataag attcgtaagg
     3181 taaaggacct tacgaattct ttgaacaaaa ggtcagttta ggtcaaacga gaacagtttg
     3241 acttactctt gaacctattg gtcagtaaaa gacaaacttc taaggaggtt actatgaaag
     3301 acaggattat accctattag cgtcatttag tttatctttt attactgcgt taactcgctt
     3361 tgccgtactt cagtactgcc ttcagctcgt tgcctagtac taaaagcaaa ctaaaagact
     3421 atatcaattt ttttaaaaca aaggtcagta aaagtcaaaa gtaaataaaa cttaaacgag
     3481 gtaaaaacta tgaacaacaa tttcaataac tttaacaata tggacgatat tttcaatcaa
     3541 ctcatgggca acatgggtgg ctacagcaca gaacgtcgcc gttattctat caatgggcgt
     3601 gaagtgacac cggaggaatt cgctatgtac cgtcagactg gtcgcctgcc acagactgaa
     3661 gaagtggctc aaacacaggc taaaggtcag ataaagtcag acggaattct tgcaaaactg
     3721 ggtcgcaatt tgacccaaga tgcgcgtgaa ggtaagttgg atccagtcat tggaagaaac
     3781 aaagaaatcc aagaaacatc ggaaattctg gcgcgccgta ccaagaacaa tccagttttg
     3841 gtcggtgatg cgggtgtcgg aaagacagcg gtagtagaag gcttggctca agccattgtc
     3901 aatggtgatg tgccagcagc cattaagaac aaggaaatca tctccatcga catttcaggc
     3961 ttggaagctg ggactcagta tcgtggagct tttgaggaaa atgtgcaaaa tcttgtggat
     4021 gaagtcaaaa aagcaggaaa tatcattctc ttctttgatg aaattcatca gattttggga
     4081 gctggtagca ctggtggaga ctcaggttcc aagggtttgg cagatattct caaaccagct
     4141 ttatcccgtg gggaattgac cgttatcggt gccactacac aggacgaata ccgcaatacc
     4201 attcacaaaa acgctgcttt ggctcgtcgt ttcaatgaag tcaaggttaa tgctccgtcc
     4261 gcagaagaca cctaccagat tttgaaaggg attaagccgc tctatgaagc ccaccacaat
     4321 attgaattgc cagatgaggt tttgagagct gcggttgatt attccgtcca atatattcca
     4381 caacgtagct tgcctgataa ggccattgac ctggtcgatg tgaccgctgc tcacttggct
     4441 gcacaacatc ctgtgacaga tattcagacc ttagaggcag aaatggctga ggcaaaacag
     4501 ttgcagttgg aagcggctga gaaagaggat tatgaaaaag ccttgaatga aaaggtccgt
     4561 attgataagc tacaaaaaca gattgataat catacggagc aacagaaagt ggtagcgacc
     4621 gttaatgatg tggctcaggc ggttgagcgg atgacaggaa ttccagtctc gcaaatggga
     4681 gcttctgaca ttgaacgact caaggaattg aaaaatcgcc tgtcagccaa ggttatcggt
     4741 caagacgatg cggtggaagc agtatctcgt gctattcgtc gaaatcgtgc aggttttgat
     4801 gacggcaacc gtccgattgg ttccttcctc tttgtcggtc cgacaggtgt gggtaagaca
     4861 gagttggcaa aacagttagc gctagacttg tttggtaaca aggatgccat tattcgtttg
     4921 gatatgtctg aatacagcga tcggacagcc gtttccaaat taatcggtac cacagctggc
     4981 tacattggct acgatgacaa ttcccatact cttaccgaac gtgtccgccg caatccgtac
     5041 tcaatcgttc ttctggatga gattgaaaag gcagatccgc aagtgattac tcttctcttg
     5101 caagtgctag atgatggtca tttgactgat ggacagggca accaagttaa ctttaagaat
     5161 accattatca tcgctacatc taatgcaggt tttggttatg gaatggcaga aggtgaagaa
     5221 aatcaagaca tcatggaccg tattgcacca ttcttccgtc cggagttcct taatcgtttt
     5281 aacgcagtta tcgaattcaa gcacttggat aaagatgatc tcaaagccat tgtagaatta
     5341 ctcttggccc aggtcaataa taccctggct aaaaaaggta ttcacttaga agtgactgag
     5401 gcagcaaaag aattcttgat ggaagaaggc tatgacaagg ctatgggagc ccgtcctcta
     5461 cgccgtgtga ttgaaaatca gattcgagac aaggtaacag attactattt ggatcatgtt
     5521 gatgtcaaat atctggaagc ggatgtggtt gatggaagca tccaaataaa agagcaaagc
     5581 tttgcttaaa aatagttaag aattcagaaa atcggataga aatatctgat tttttctttt
     5641 ttgttattcg ctaacaaatg ctataaaata ggctttctag agcacattaa aacttttttt
     5701 ataaaatcct tgacaagtgc aaacgtttgc gttaaactat attcgtaacc gacagaaagg
     5761 aaaacgtttt tatgacaaat cgtaccagtg gaattttgat gcatattacc tcacttccag
     5821 gtaagtttgg tattggtact tttggacagt ctgcctatga ttttgtagat ttcttggtgg
     5881 aaaccaagca aacctactgg cagattttac cactaacaac tacaagctat ggagattctc
     5941 cttaccagtc tttctctgct attgcaggaa atacacactt gatagacttt gacctcttgg
     6001 ttgaagatgg cttattggca ccagaagatt tccaagatgt aaattttgga gataatcctg
     6061 aaaaagtaga ctatgctctt atctatcaag ttcgtcgacc aattttggag aaggcagttc
     6121 aagcattttt acaagatgat aagaagaaag ctgcttttct agagtttgaa aaggctaact
     6181 catcttggtt gacagattat gctgagttca tggctatcaa ggaatacttt ggtaataaag
     6241 ctctccaaga atgggaagat aaaaaagttg tagctcgcaa cgaggaagct cttgataagt
     6301 accgcttaga attggcaaat caaatcgact actacaaagt cacacagtat ttcttcttca
     6361 gccaatggaa acaattgaaa gaatatgcca acaaacacca catcaaaatc atcggagaca
     6421 tgccaatcta tgtttctgct gatagcgttg aagtgtggac aaaaccacaa ctattcaaat
     6481 tggacagtga acgcaagccg ctttatgtag caggtgtacc agctgataac ttctcggcag
     6541 atggtcaatt atggggaaat cctatttacg attggccaga acatgaaaaa acaggctata
     6601 actggtggat ttatcgtatc catgaaagtt tcaaacttta tgatgtcctt cggattgacc
     6661 atttcaaagg tttctcagac ttctggcaag ttgatggtaa ggcagaagta gctaaggttg
     6721 gtacctggga accaggtcct ggctacaatc tcttcaaggc tgtcaaagaa acacttggag
     6781 accttccaat cattgcagaa gaccttggaa acattgacgc taaagctcgt aaattgcttg
     6841 cggattgtgg ctatccaggc atgaaaatct tagaatttgg tttctttgat gtaacaggta
     6901 agagtatcga tgctccacac cgttgcattc caaattcagt tgcctacact ggaactcacg
     6961 ataatgaggt tgtcaatggc tggtacaaca atcttgatcc agaacaacaa gaatacgtgg
     7021 acgcctatag caaccgtaag ccgattgaaa aagttagcca agctatgctc cgtatgctgt
     7081 ttgcaacagt gagtgataca gctattgcaa ccatgcaaga cgtcctagac ttgggtgaag
     7141 aaagtcgaat gaatatgccg tcaactatcg gtggaaactg ggaatggcgc atgaaagctg
     7201 aagacttgac ccaagaacgc aaagacttct tgacaaaaat gacattacta taccaacgag
     7261 gaaatgaaaa ccatgactaa atttacaaca tttgcagaaa caaacacttc gaagaaatta
     7321 gctgatttga caaatgaaga aatctatctt caactgttga actacgtaaa agaagctgca
     7381 gcttcaaaac caaaaaacac aggaaaacgt aaagtttact atatctcagc tgagttcctt
     7441 atcggtaaac tcttgtcaaa caacttgatt aacttgggtg tgtacaaaga cattcaagca
     7501 gaattggcag cagctggtaa atcattggct caagttgaag atgttgaacc agaaccatca
     7561 cttggtaacg gtggtttggg acgtctagct tcatgtttca ttgattctat gtcaacactt
     7621 gcaatcaacg gtgaaggtgt tggtctgaac taccactgtg gtcttttccg ccaagtattt
     7681 aagaaaaacg agcaagaagc agagccaaac ttctggattg aaaatgattc ttggttgatt
     7741 ccaacaacta tcagctatga tgttccattc aaaaacttca ctttgaaatc gaaattggat
     7801 cgtcttgata ttcttggcta taaaaaagag actaagaact acctcaattt gtttgatatt
     7861 gagtcagtaa actatgactt gattacagac ggtatttcat ttgacaagac tgatattaaa
     7921 gaaaacttga cactcttctt gtacccagat gattctgata agaatggtga attgctccgt
     7981 atctaccaac aatatttcat ggtatcaaat gcggctcaat ttttgattga tgaagcaatt
     8041 gagcgcggtt caaacttgca tgacttggct gactacgctt atgtgcaaat caacgatact
     8101 cacccatcaa tggtgattcc tgagttgatc cgtcttttga ctgaaaaaca tggtattgaa
     8161 tttgcggaag cagttgccat cgttaagaat atgactggtt acacaaacca cactatcttg
     8221 gcggaagcgc ttgaaaaatg gccacttgag ttccttgaag aagtggtgcc gcacttggtt
     8281 gatattatca aagaattgga tgcccttatt cgtgcagaaa ttaaagaccc agcagtccaa
     8341 atcattgatg aatcaggtcg tgtacacatg gctcacatgg atatccactt ctctaactca
     8401 gtgaacggtg tagctgcgct tcacacagaa atcctcaaaa actctgaatt gaaagctttc
     8461 tacgagcttt acccagaaaa attcaataat aaaacaaacg gtatcacttt ccgccgttgg
     8521 ttggaatttg ccaaccaaga cctcgctgac tacatcaaag aattgattgg cgatgagtac
     8581 ttgacagatg cgactaaact tgaaaaattg cttgcctttg ctgatgacaa ggaagttcat
     8641 gctaagttgg cggaaattaa acacaacaac aagttggctc ttaaacgtta cctcaaagat
     8701 aacaagggta tcgagctgga cgaaaactct atcattgata cacaaatcaa acgtttccac
     8761 gagtacaaac gccaacaaat gaatgccttg tatgtcattc acaagtatct tgaaatcaaa
     8821 aacggcaatc tgccaaaacg taaaatcact gttattttcg gtggtaaggc agctccagct
     8881 tatgtgattg cccaagacat cattcacttg attctttgct tgtcagagtt gatcaacaat
     8941 gacccagaag taaataaata cctcaatgtt cacttggtag aaaactacaa tgtgacagtt
     9001 gctgagaaac tcatccctgc aacagatatt tcagaacaaa tctcattggc ttctaaagaa
     9061 gcgtcaggta ctggtaacat gaaattcatg ctcaacggtg ccttgacact tggtaccatg
     9121 gacggtgcca acgttgagat tgctgagttg gctggtatgg acaatatcta tacatttggt
     9181 aaagattcag ataccatcat cgacttgtac gataaggctg gatatgtatc tgcggactac
     9241 tacaatggcg atgccaatat caaacgtgcg gttgacttta tcgttagcga cgaagtgctt
     9301 gcccttggta atgaagaacg ccttggtcgt ctccaccatg aattgatttc gaaagactgg
     9361 ttcatgacct tgattgactt ggctgagtac attgaagtca aggagcaagt ctttgcagac
     9421 tacgaagatc aagattcatg gaataagaaa gttgttcaca acattgccaa agcaggattc
     9481 ttctcatctg accgtaccat tgaacagtac aatgaagata tctggcacag taaataatcc
     9541 aaaacaaaag catgcttccg agagggaaca tgcttttttg ctatgtttag ttttatcgtt
     9601 tggccataga tacaaaggtc accttgtctg gtcgataggt gatggttccg tactggaaag
     9661 cttgaccatt tgaaagatag gtggtactgg tgacggagac caccatgtcg tatcctgcca
     9721 gatcaagcaa ggatttttct tcttccgtcg caaagcggaa ggaaatttct cggcgggaat
     9781 gggaaatttc taagccaagg tcgttttcca aatactgata aatcgatttt tcagcgactt
     9841 ccttgctgag ataggggaca atcctgcggt caaagtagga aatctcatac tctaaacgct
     9901 ctccatcaat agtccgaacg cggctgacac ggtacagatc cgttttttca tcaacttcca
     9961 attccttcat gacctctggc tgaccttgga caatatagag gttggtcaat tcggtctgga
    10021 cttgatgatg ggcagagcgg ttgagttcac tgacagtctt caattcggac acaaatggtt
    10081 ttctgaccag gttatggtcc aaaataatgg aatttctccc ttgacgtttt tggatataac
    10141 catccatttc taataacgat agggccttgc ggatggtgtc cttggaatag gaataaatct
    10201 ccatcagttc attttctgta ggcatctctt gattggcatg ccagatattt tgttcaattt
    10261 tttccttgat gtcagcatag actttcttgt atttactcat ttggggtaac ttcctagctt
    10321 gctatttacc gctagtatat cataaaaaat gccaaaggtc agtattctaa gtctagacaa
    10381 acttttacgt aaaactaata aaattattcc gtaaaactgt tgacagttga aaacgtttac
    10441 gttataataa ggttacaagt tgaatacgtt ttactaagta aatagaaagg agcggtatga
    10501 aattattaac agtcaatgtc catgcctggt tggaagaaaa tcaagttcaa aaattggaca
    10561 tacttgctca gactattgct caaaagcaat acgatgtgat tgctcttcag gaagtcaatc
    10621 agctgatgac aagtcccttg gtgaccaggg agttgcgaca agataattat ggtttggttt
    10681 tgcttgaaaa actgaaagag ctgggaatag cagattattc ctatttctgg tccaattctc
    10741 atatcggtta tgacaaatac gatgaaggga ttgcctttct cacaaaatta ccggtctacg
    10801 aagtggatgc cttctattgt agtcagcacc aagatttgac atcaatcctt tctcgcaaga
    10861 ttataggatt gacggtggca tatgggaatg agttgataga tttgtattcc tgccatatca
    10921 atcttcctga tagtcaagaa gaaaatcagt tggagaatat tcgctcgatt gtggaacgga
    10981 caagttcgga ccgcttgaaa attctaatgg gagatttcaa tacggatgcc ctgtcaaatc
    11041 ccaaagccta ccaggctatc agggaccttg gactttatga tagttatgat ttggcagagg
    11101 aaaaggatag gggaatcacc gttgaaaaag ccattgatgg gtgggcaggt catagtcagg
    11161 aaaaacgtct ggactatgtg ttcttaaatc agaaaagaca ggttcaatcc agtcgtgtga
    11221 ttttcaacga ggaaaatctt cccattattt cagaccactt tggtgtggaa gttgaaatta
    11281 atgtataaaa tggcacagag ccaaaaaata aaggagaaaa aatgaaaaaa tttcttagtt
    11341 tcgaattttg gcaaaaattc ggtaagtgtt taatggtcgt gatcgccgtt atgccggcgg
    11401 caggtctcat ggtttctatc ggaaactcga ttccactaat cagtcctgaa tcagaattgc
    11461 ttattcgtat tgggaatatc attgcccaaa tcggttgggg gattatcggt aacctccact
    11521 tgctctttgc cttggcaatc ggtggaagct gggctaagga aaaggctggt ggagccttct
    11581 cagcaggtct tgccttcatc cttattaact tgattacagg tcacttcttt ggtgtgacga
    11641 ctgacatgct tgcagatgca gcagcaaccg taaccactgt ttttggaaca gagattccag
    11701 tttcaggcta cttcgtcaat atcttgggtc aacctgcttt gaacatgggt gtctttgtag
    11761 ggattattgc tggttttgtt ggtgcgactg cctacaacaa atattacaac tatcgcaagt
    11821 tgccagatgt attgaccttc tttaacggca aacgcttcgt accatttgtt gtcatctatc
    11881 gctcagttct tgtagcgcta ggattagcta tcttttggcc agttgttcaa acaggaatca
    11941 atagctttgg taaatggatt gcaagctcac aggatacagc accaattctt gcacctttcg
    12001 tttatggtac cttggaacgt ttgcttcttc catttggttt gcaccacatg ttgaccattc
    12061 caatgaacta cacatcgctt ggtggtacct atgacatctt gacaggtgct caagcaggta
    12121 cacaagtatt tggacaagat ccgctctggt tggcttggat tacagacttg attaacctca
    12181 aggatgctgg tgatttggct cagtacaatg acttgcttgc taatgtaacc cctgctcgct
    12241 ttaaagtagg tcaaatgatt ggttcctctg gtattctcat gggcttaact cttgctatgt
    12301 accgcaatgt tgatgaggat aagaagaaaa aatatcgtgg tatgttcctt tcatctgctg
    12361 cagccgtctt tttgacaggt gtaacagaac caattgagtt tatgttcatg tttgcagcaa
    12421 tgccactcta tgtcgtttat gcttttgtac aaggtgctgc ttttgctatg gcggatattg
    12481 tcaatttgcg tatgcactca tttggtaata tcgaattcct tacacgtaca ccgatggcga
    12541 ttaaagctgg tatcggtatg gatgctttca actttatctg ggtaacagcc ctctttgcgg
    12601 ttggtatgta cttcattgcc aactttatga ttaagaaatt caacctagca acagctggac
    12661 gcaatggtaa ctatgataca gaaacaacgg atgtggtttc aaactcaaac gtagatactg
    12721 cggatgccaa ttcacaagtg gtacaaatca tcaacttgct tggtggtcgt gataatatcg
    12781 cagatgtgga tgcttgtatg actcgtcttc gcgttagtgt caaagatgtg gcacaggttg
    12841 gagatgaaaa tgcttggaaa caggctggtg ctatgggctt gattatcaaa gactcaggtg
    12901 ttcaagcagt ctatggacca aaagcagatg ttctcaaatc agacattcaa gacttgctag
    12961 aatctggcgt ggccatccct cgtacggaaa ttgttgcgac tgaaacagta gttgaggaag
    13021 cacaattcaa aggtgtgacc gaggcagttt atgctgttgc tgaagggcaa gccattgcca
    13081 tcacagaagt gaaagatccg gtcttctcac aaaaaatgat gggcgacggt tatgcagtcg
    13141 agcctagctc cggcaatgtt tatgcaccag tttcaggtat cgtaaccagt gtcttcccaa
    13201 ctaaacacgc tgtcggtatt ttgtctgaca agggtgtaga agttttagtt cacgttggtt
    13261 tagacacagt tgcactaaac ggagctccat tctcaactaa ggtaacagat ggtcaacgtg
    13321 ttgaagcagg ggattttctc cttgtcgcag atttggaagc cattcgctca gcaggacgtg
    13381 aaacaaccat cgttgttgcc ttcacaaaca cagctgaaat caaatctgtc agccttggaa
    13441 atcttgggca agtaagcaaa gatagtcaag ttgcgacagt tgagttgtaa aaagtaaaaa
    13501 aagattgaaa agacgattgc agtcaattct tttcaatctt tttcttttgg atagtatgcc
    13561 gtcagtattt ttctaatttc ttcgcttctt ttttaccttt ttcagcgata tggaggaaat
    13621 aaatagacca agcaaggaaa aataagggaa taatgccact tctaaacaat gcgaatgggg
    13681 tttcaaagag aaaaccaaac caaaaactgg taccagttcg ttcccatagt cctggagtta
    13741 ggtaccagga tttaggattc caaagtgtgt atccattttg gagtccaact tggtaatgga
    13801 taaaaaataa agtcagaaat aatccgaaat aggagtaggc ataattttgg tagcgtgaat
    13861 agaatgcttt ttttgattcg gtatcagaaa aaatttctgt gcttgaagct tcgattgttt
    13921 gttgaaaata atggatgcca catctacgac taccttgtat aggttgccaa ccacagtctt
    13981 caaatagaga gaggtaattt gaatattctc cttttgcaat atgttcatga aaatcaaggc
    14041 gtacgggatg agggattcga ctacattttt caaaatgata ggctgctgtc cacggagtta
    14101 ctttgacaag ctgataacct tcggattgat actcttcgaa aatccaaatc agacgttgtt
    14161 gacttgattt gatgaacttc agttctatct gcatctgcgt cgcctagtct gtttttgatt
    14221 ttcattgagt aggaatcgaa ttaatccaat gttcttcctc ttgtaaactg gtgaataatt
    14281 tgtgtcttat catggcttcc tccttaaaaa cctaattctt tggcaatatg atgtagtttt
    14341 tgaatacgct gtgtttccag tttaataatc tcttggcccg ttgctgttac ttgatagact
    14401 tttcttcttt tatcggaact tggaacggaa caaatccatt ttagtttcaa aagattctca
    14461 atcgctccat acatggttcc tgcagcgatt ttcacatcac catcactcat atcctctact
    14521 ttttgcatga tatggtagcc atgggcaggt tccaagaggg ctaatagaat atagtaggtt
    14581 gtctccgtta aggggaggtg tttgttcctt ttcatttggc ttctcctatg tagttcaaat
    14641 gtacagttgt actatatatt atatatcgga aaactataca tgtcaactgt atagtaaaga
    14701 agattttaaa aatcttctca atccttgcca tttatggtat aataaagcga ttttataaaa
    14761 tgtaggaggt tccccatggg acgtaaatgg gccaatattg tagccaagaa aaccgcaaaa
    14821 gacggtgcta actcaaaagt ttacgccaaa tttggtgttg aaatctatgt agcagcgaaa
    14881 aagggtgacc cagatccaga aacaaactca gcgctgaaat ttgttatcga ccgtgctaag
    14941 caagcgcagg ttccaaaaca tatcattgac aaggccattg acaaggcaaa aggaaacaca
    15001 gacgaaacct tcgtggaagg tcgttacgaa ggctttggac caaatggttc tatgattatc
    15061 gttgatacct tgacatcaaa tgtaaaccgt accgcagcca atgttcgctc tgcctttggt
    15121 aaaaacggcg gtaacatggg tgcatctggt tctgtatcat tcatgtttga taaaaaaggt
    15181 gtggttgtct ttgcaggtga tgatgcagac gtcatcttcg aattgctcct tgaagcagat
    15241 gtcgaagtgg atgacgtaga agcagaagac ggcacaatca ctgtttatac agcaccaact
    15301 gatttgcaca aggctatcgt ggcactgaaa gaatcaggaa tccaagagtt caacgtcact
    15361 gaacttgaaa tgctcccaca atcagaagta tcacttgaag gcgatgacct cgcaacattt
    15421 gaaaaactct acgatgccct cgaagacgac gaagacgtcc aaaaaatcta cacgaatgta
    15481 gatgggtttt aatataaaaa aagtgctagt agcacttt
//
LOCUS       DASGAC010000036        15406 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.036, whole genome shotgun sequence.
ACCESSION   DASGAC010000036 DASGAC010000000
VERSION     DASGAC010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15406
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.036"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..1362)
                     /locus_tag="U1335_000869"
     CDS             complement(<1..1362)
                     /locus_tag="U1335_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000491790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEM5231365.1"
                     /translation="MPKRLKKLMYTDKFSFFIRYFAVFTLIFGLMTAIIFQLMRSTMY
                     QNSDNTLKRIKEEPAMAVGFAIARTYEPNSVFILQDSPTSEETTSSSSDSMPVPKNQK
                     NTRDVEQLKLGINTHVLLYSKSGEMVNPDTFTGLADLPLDKEKLGGIKEATVESSFGM
                     SEDYRYVTIELATDELGYYSSYDIKYATILVNVSQIKSSIETYESTVAIVMVSAWLIS
                     ILASIYLSNLSMRPILISYQKQKDFVENASHELRTPLAVLQNRLESLFRHPEATILES
                     SESIGSSLEEVRNMRLLTTNLLNLARRDDGLKVDMIDVQPNYFDEIFANYLMIAEENG
                     KTLTVNNLIHQPIRTDKVLIKQLLTILFDNAMKYTDDDGRIQITANIKDKSVYFTVAD
                     NGLGISDADKKKIFDRFYRVDKARTRQKGGFGLGLSLAQQIIKTLGGKISVRDNQPKG
                     TIFE"
     gene            complement(1355..2026)
                     /locus_tag="U1335_000870"
     CDS             complement(1355..2026)
                     /locus_tag="U1335_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019320695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5231366.1"
                     /translation="MIKILLVEDDLSLSNSVFDFLDDFADVMQVFDGEEGIYEAETGV
                     YDLILLDLMLPEKDGFQVLKELREKGVTTPVLITTAKESLEDKGHGFELGADDYLTKP
                     FYLEELKMRIQALLKRAGKFNENTLTYGDVTVDLSINSTTVNGEEVELLGKEFDLLVY
                     FLQNQNVILPKTQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTTFGENLQTLRSVGY
                     ILKNA"
     gene            complement(2171..2554)
                     /locus_tag="U1335_000871"
     CDS             complement(2171..2554)
                     /locus_tag="U1335_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231367.1"
                     /translation="MSIINQLKSQSKTVLAAVAITAATVGFAGGMSISKSSTGVSTQN
                     QASLAQNNSAATNGQANSIAGNQMPPASNGGMQGMPPGQGTTPPDATSGATQSNTSSD
                     EVNALKEKNQEIKAQISGSSNTSNQ"
     gene            complement(2704..3360)
                     /gene="phoU"
                     /locus_tag="U1335_000872"
     CDS             complement(2704..3360)
                     /gene="phoU"
                     /locus_tag="U1335_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000946475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HEM5231368.1"
                     /translation="MLRAQFEEELGKLHNQFYAMGNEVLAQINNAVRAFTTHDRELAK
                     EVIEADKKINAFEVKLEKKSLEIIALQQPVSTDLRSVITVLKATSDLERMGDHAVSIA
                     KAAIRMKGEVRIPVVEEEVKKMGKEVRKLVEETLELYLANSDVEVAYEVAARDEIVND
                     FYSAIQELTTEEIKKNPESLVAGRDYFQVLTYLERVGDYAKNICEWVVYLRTGDITEL
                     "
     gene            complement(3389..4147)
                     /gene="pstB"
                     /locus_tag="U1335_000873"
     CDS             complement(3389..4147)
                     /gene="pstB"
                     /locus_tag="U1335_000873"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014294590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEM5231369.1"
                     /translation="MTSPILQVKDLSVYYNKKKALNNVSIDFYPNEITALIGPSGSGK
                     STLLRSINRMGDLNPEVTLTGAIDYNGKNIYSPRTDTVDLRKEIGMVFQQPNPFPMSI
                     YENVVYGLRINGIKDKQVLDEAVERSLIGASIWNEVKDRLHDSAVGLSGGQQQRVCVA
                     RVLATSPKIILLDEPTSALDPISAGKIEDTLYGLKDKYTMVLVTRSMQQASRISDRTG
                     FFLDGDLIEYNLTKEMFLNPANKETEDYITGKFG"
     gene            complement(4159..4962)
                     /gene="pstB"
                     /locus_tag="U1335_000874"
     CDS             complement(4159..4962)
                     /gene="pstB"
                     /locus_tag="U1335_000874"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000852852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEM5231370.1"
                     /translation="MADYNWNERHIITFPEENIALSTKDVHVYYGKNEAIKGIDMQFE
                     KNKITALIGPSGCGKSTYLRSLNRMNDTIDIAKVTGQILYEGIDINRPDMNVYEIRKH
                     IGMVFQRPNPFAKSIYRNITFAHERAGVKDKQVLDEIVETSLKQAALWDQVKDDLHKS
                     AFTLSGGQQQRLCIARAISVKPQILLMDEPASALDPIATMQLEETMFELKKDYTIIIV
                     THNMQQAARASDYTAFFYLGDLIEYDKTANVFQNAKLKSTSDYVSGHFG"
     gene            complement(4987..5874)
                     /gene="pstA"
                     /locus_tag="U1335_000875"
     CDS             complement(4987..5874)
                     /gene="pstA"
                     /locus_tag="U1335_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019316415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEM5231371.1"
                     /translation="MHAKKFDKLATGILYSIAGVIVVILTSLILYILLRGLPHVSWDF
                     LTSKSSSYKAGGGIGIQLYNSFFLLVVTLLISVPLSTGAGIYLAEYAKKGPLTNFIRT
                     CIEILSSLPSVVVGLFGYLIFVVQFEYGFSILSGALALTVFNLPQMTRNVEDSLRHVH
                     HTQREAGLALGLSRWETVLHVVIPEALPGIVTGIVLASGRIFGEAAALIYTAGQSAPA
                     LDWSNWNPLSVTSPISIFRQSETLAVHIWKVNSEGTIPDATQVSAGSAAILLVFILIF
                     NLSARYIGKKLHAKMTSAA"
     gene            complement(5864..6781)
                     /gene="pstC"
                     /locus_tag="U1335_000876"
     CDS             complement(5864..6781)
                     /gene="pstC"
                     /locus_tag="U1335_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018378778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEM5231372.1"
                     /translation="MKNEQLAKELSSPSKNSRLEKFGKVITFLCLSLIVFIVAMILIF
                     VAQRGLSTFFVDGVSITDFLFGSKWEPSSKIFGALPMISGSFIVTILSAVVATPIAIG
                     AAVFMTEISPKRGAKILQPVIELLVGIPSVVYGFIGLQVVVPFVRSIFGGTGFGILSG
                     VFVLFVMILPTVTFMTVDSLRAVPRHYREASLAMGATRWQTIWRVILNAAKPGIFTAV
                     IFGMARAFGEALAIQMVVGNSAVIPTSLTTPAATLTSVLTMGIGNTVMGTVQNNVLWS
                     LALVLLLMSLIFNMIMKFITREGKKNYAR"
     gene            complement(6784..7653)
                     /locus_tag="U1335_000877"
     CDS             complement(6784..7653)
                     /locus_tag="U1335_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS family protein"
                     /protein_id="HEM5231373.1"
                     /translation="MKKKQKLGIAALFLLSSMALSGCSSWIDRGESITAVGSTALQPL
                     VEAAADEFGSVNIGKSVNVQGGGSGTGLSQVQSGAVQIGNSDVFAEEKEGIDASKLVD
                     HQVAVAGLAVIVNEKVTVDNITTEDLRKIFTGEITNWKELGGKDLEISIINRAASSGS
                     RATFDSVIMDGQTATQSQEQDSNGMVKSIVAQTPGAISYLSFAYLDDSVKTIKLNGFE
                     PTAENVATNDWPIWSYEHMYTMGNATDLTEEFLDYMMSDEVQDGIVESMGYISINDMK
                     VVKSADGTVSEKE"
     gene            complement(7791..9092)
                     /locus_tag="U1335_000878"
     CDS             complement(7791..9092)
                     /locus_tag="U1335_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmF rRNA methyltransferase first C-terminal
                     domain-containing protein"
                     /protein_id="HEM5231374.1"
                     /translation="MQLPQDFIDKYNHLLGSEAQAFFESFDEPAISGFRVNPLKENQL
                     DFEQLIPDMPWSYYGKVSGKSPEHVTGLVYSQEPAAQVVGQIAAPEKGMKVLDLAAAP
                     GGKSTHLLSYLENTGLLVSNEISNKRAKILAENIERFGARNVVVTNESADRLEKVFPG
                     YFDMIVLDAPCSGEGMFRKDPDAIQYWSKHYPAQCASLQREILESALNMLAPGGQLIY
                     STCTWSPEENEEVVTWLLEQYDLELIDIPKINGMVEGVGYPEVARMYPHHFAGEGQFV
                     AKFRFLGESSQKKLKPGKSNLNREQQSLWKEFEQKHLRVQLDGLLQVFGDNLYLLPHG
                     LPDLSKVKIARNGLHLGTFKKKRFEPSFALGLALHSSEVKNRVEISSEEFSSYTAGHT
                     IAVSKDLANGWYQVAVQGNGLGFAKIVSGTLKNGFPKGLRF"
     gene            complement(9092..9850)
                     /locus_tag="U1335_000879"
     CDS             complement(9092..9850)
                     /locus_tag="U1335_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEM5231375.1"
                     /translation="METKYHFAQTIVLEAGNFLRQHLHDNLQIEEKGDFTDLVTHLDK
                     QVQEMLTKQIQSRYQGDGILGEEGGDVSSIHEGNVWVIDPIDGTTNFIAQKTDFAIMI
                     AYFENGVGKFGIIYDVMRDKLFHGGDSFPVYCNQERLKKPELRPLRQSLIGINAKLYA
                     GNAHGVAELANQSLGTRSVGSAGIGFAHVLEGRLFAYASYLCPWDYAAASIIGSSLGL
                     VMLSFDGPNLAYDKREFVMLVSESHLEEVKGYIF"
     gene            complement(9840..10118)
                     /locus_tag="U1335_000880"
     CDS             complement(9840..10118)
                     /locus_tag="U1335_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002286915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0223 family protein"
                     /protein_id="HEM5231376.1"
                     /translation="MNKNYSYPLDFSWSTEEISSVLSFLNQVEAAYEKGADAVAILAS
                     YKSFKDVVKSKGQERQIDRDFEAVSGYSTYRVVKAARDKGKGVIRFGN"
     gene            complement(10133..10534)
                     /locus_tag="U1335_000881"
     CDS             complement(10133..10534)
                     /locus_tag="U1335_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004246303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spx/MgsR family RNA polymerase-binding
                     regulatory protein"
                     /protein_id="HEM5231377.1"
                     /translation="MITLFLSPSCTSCRKARAWLTSHEVPFIEHNIMTSPLTAEELKN
                     ILALTENGTDDLISTRSKVFQKLDIDVDELSVKQLIGLIETYPSLLRRPIILDEKRMQ
                     IGFNEDEIRAFLPRKYRKQELKNATLRAEIG"
     gene            complement(10608..11345)
                     /locus_tag="U1335_000882"
     CDS             complement(10608..11345)
                     /locus_tag="U1335_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium channel family protein"
                     /protein_id="HEM5231378.1"
                     /translation="MLKRLIRHPFYEKAMTYIAVVYVGLIVLELMDANIANSSGYRVL
                     DLLLWFVFVCDYFAQLYYADDILEYVQDHILELIAIIPFDLFFSFLRLGRLARLFRLV
                     KVTRIFALSNRFWDTINKLLHTNSLSKVLMLNISAVLVASVLLSVIEGKSFFDALWWS
                     IVTMTTVGYGDIVPQDTISKIIAILLMLVGICTFGMVTSTITRFFSETERETKLDTLM
                     AKIDEQNEILLRLEKKIESLEKLQGRE"
     gene            complement(11338..12261)
                     /locus_tag="U1335_000883"
     CDS             complement(11338..12261)
                     /locus_tag="U1335_000883"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEM5231379.1"
                     /translation="MKIRTIKNYQELHQEKPTVLVLGYFDGIHLGHKALLDRARQVAD
                     EKGLTVTVLTFPESPRLAFSRFSPELLLHLTSQDQRYHLLEQYGVDQLVLTDFTSEFA
                     NNTPQQFLERYIKGLNAQVLVAGFDYHFGNCRADVKDLTELFGGQVEIVSEVSLGGEK
                     VSSTRIRQAIQSGDVSLANQLLGYPFMTEGIVVHGDARGRTIGYPTANLAPFDRVHLP
                     SEGVYVADVEVDGKRYRAMTSVGKNVTFDGTEMRIEAHIFNFDRFIYGEKITIFWLEK
                     IRDMVKFDGIEGLMEQMKSDEEFALQWEKYA"
     gene            complement(12281..13171)
                     /gene="truB"
                     /locus_tag="U1335_000884"
     CDS             complement(12281..13171)
                     /gene="truB"
                     /locus_tag="U1335_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005590179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEM5231380.1"
                     /translation="MSGIINVKKEAGMTSHDVVFKLRKILQEKKIGHGGTLDPDVTGV
                     LPIAVGKATRMIEYMQDEGKIYEGEITIGYSTTTEDASGEIVEQTPILDIAEQAVDEA
                     MASFVGTITQIPPMYSAVKVNGRKLYEYARAGEEVERPQRQIEIYSFERTSPIERADD
                     CARFTFRVRCGKGTYVRTLSVDLGAKLGYASHMSKLERTGSAGMSLADALTIEEIADK
                     VTQNDYSFLRPIEQGIGDLPIVDLTIEQVIEARYGRFITLDSQAELLAGFHKEKLVAI
                     MEKRDQVYKPRKVFLEEVLA"
     gene            complement(13224..13433)
                     /locus_tag="U1335_000885"
     CDS             complement(13224..13433)
                     /locus_tag="U1335_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231381.1"
                     /translation="MEWSTIKFGDKDHYDAPLMFSWGYDEEEETGIDEAVTYEVAPSG
                     TMRRIHKELENLIGTTFGSYRFYDE"
     gene            complement(13405..13655)
                     /locus_tag="U1335_000886"
                     /pseudo
     CDS             complement(13405..13655)
                     /locus_tag="U1335_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636000.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(13682..14005)
                     /locus_tag="U1335_000887"
                     /pseudo
     CDS             complement(13682..14005)
                     /locus_tag="U1335_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364639.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
     gene            complement(14016..>15406)
                     /locus_tag="U1335_000888"
     CDS             complement(14016..>15406)
                     /locus_tag="U1335_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2726 domain-containing protein"
                     /protein_id="HEM5231382.1"
                     /translation="LVSKYGNERNRVQFTKEDLREQSKRVLLEYPIVLSTTFSSTTSL
                     GKDITYDYLIIDEASQVDITTGALALSCAKNVVVVGDSKQLPHIVTKDVKESSAQLFH
                     KYGVHSGYEYTNSFLQSVLKVIPNIPETLLREHYRCHPKIINFCNQKFYNGDLVIMTG
                     DNGEKDVLQAIRTPKGNHARDHYSQREIDIILKDVIPNYEIYRERTGVVTPYRKQKEK
                     LQEQIDDLESDTVHKFQGKEKDTIIISTVDNSITRFTDDPYLLNVAISRAKNKLFLVM
                     TGNEQSLDKNISDLLGYIQYNNFEVRESPIYSIFDYLYKQYEQEKEEYFRKRKRISRY
                     DSENLMYHRIREVFMSDEKYNSLDVIHGYKLHNLVKDFTRLTEVEAKYARHGNTHLDF
                     LIINRLTKAPVLAVEVDGYAFHKGNSKQFERDIMKDNILKKCDLPLIRFKTNESQEKE
                     KLIEILDGLLGR"
BASE COUNT         4544 a         3460 c         2669 g         4733 t
ORIGIN      
        1 ctcaaaaata gttcctttcg gttggttatc tctaacagag attttcccac ctagtgtctt
       61 gataatttgt tgagccagcg ataatcctag accgaaacca cctttttgac gcgttctggc
      121 cttatcaact cgataaaagc gatcaaagat tttcttctta tcggcatcgc tgattcccaa
      181 accattgtcg gcaactgtga agtagacaga tttatccttg atattagctg taatttgaat
      241 tctgccatca tcatcggtat acttcatggc attgtcaaat aaaatggtaa gcaactgttt
      301 aatcaggacc ttgtctgttc gaatcggctg atgaatcaaa ttattaactg ttagtgtttt
      361 tccattttct tcggcaatca taaggtaatt agcaaagatt tcatcaaaat agttgggttg
      421 gacatcgatc atatcgactt ttaagccatc atcacgacga gccaaattga gcaggttcgt
      481 tgtcaataat cgcatatttc ggacttcttc caaactagat ccgatgcttt cactactctc
      541 taaaatcgtc gcttcgggat ggcgaaacag gctctccaag cgattttgga gaacagccaa
      601 cggcgtacgt aactcatgac tagcattttc aacaaagtct ttttgctttt gataactgat
      661 tagaattgga cgcatgctaa gattcgatag gtaaatactg gctaagatag aaatgagcca
      721 agctgaaacc ataacaatag caactgtcga ttcataggtc tcaatggagg attttatttg
      781 gctgacattc actaaaattg tcgcatattt tatatcatag gacgaataat aacctagttc
      841 atctgtagcc agctcaatcg tcacatagcg ataatcttca gacataccga agcttgattc
      901 aaccgttgct tccttaattc cgcccaattt ttccttatct aacggtaggt cggccaaacc
      961 agtaaaagta tctggattga ccatttctcc acttttacta tagagtaaga catgagtatt
     1021 gatacctaat ttcagctgtt ctacatctct agtatttttt tgatttttag gaacaggcat
     1081 gctatctgag ctagagctcg tcgtttcttc actagttggg ctatcttgaa gtataaagac
     1141 agagttaggc tcataggttc ttgcgattgc aaaaccaaca gccatcgctg gctcttcctt
     1201 aatccgtttc aaggtattat ctgaattttg atacatagtt gaacgcatta attgaaaaat
     1261 gatagctgtc atcaaaccaa aaatcagggt aaatactgca aaataacgga taaagaagga
     1321 aaatttatcc gtgtacatta atttttttaa tcgcttaggc attttttaga atgtatccga
     1381 cactacgcag ggtttgaaga ttttccccga aggtcgttcc tttcaacttt ttcctaattt
     1441 tagaaacata tacttctact actgaaatag tcgtgtcact gtcaaatccc caaatacggt
     1501 caaaaatttg agtttttggt aagataacat tttgattttg caaaaagtag actagtagat
     1561 cgaattcttt tcctagcaat tcaacttctt cgccatttac agttgtagag tttatcgata
     1621 agtcaacggt cacgtcccca taagttagtg tgttttcatt aaacttaccc gctcgtttta
     1681 atagagcttg aattcgcatc ttcaattctt ctaaataaaa cggttttgtc aagtagtcat
     1741 cagcgcccaa ttcaaaacca tggcctttat cctctagact ttccttggct gttgtaatca
     1801 gaacaggtgt cgtaacacct ttttcacgta actctttcaa aacttggaag ccatcttttt
     1861 caggtaacat taaatctaat aaaattaagt cgtacacacc agtttccgct tcatagattc
     1921 cttcttctcc atcaaaaact tgcatgacat ctgcaaaatc atctaggaag tcaaaaactg
     1981 aattggatag gcttaaatcg tcttctacta acaaaatctt aatcatgtct atctccttaa
     2041 cctaacatct aaaagacaat tcaaagacac aagtaaaaac ttggtctttg aacatatttt
     2101 ttcactttaa tagttgcctc tgcatttctg tcagagttta atttattata ccacttatct
     2161 caaatttttc ctattggttt gaagtgttag aactacctga aatttgtgct tttatttctt
     2221 gattcttctc ttttaaagca tttacctcat ctgaggaagt atttgattgt gttgcaccac
     2281 ttgtagcatc tggaggggtt gtcccttgac cagggggcat gccttgcata ccaccattag
     2341 aggcgggcgg catttgatta cctgcgattg aattagcttg tccgttcgtt gctgcagaat
     2401 tattttgcgc cagacttgcc tgattttgtg ttgaaactcc tgttgagctt ttcgaaatgc
     2461 tcatacctcc agcaaaacct acagttgctg ccgtaatagc aaccgctgcc aaaactgttt
     2521 tcgactgtga ctttaattga ttgattattg acataaaatt cctcttttca ataaaatttt
     2581 atcatagcga gtctttactc acctgatgac acgaacagta tagaatgaga aacttaaacc
     2641 aagctaaaga ttcattgcat tttccttaaa gcaaactaaa agaagtcctt tcggacttcc
     2701 atcttacaat tcagtgatgt cgcctgttcg taggtaaaca acccactcac agatattttt
     2761 agcatagtca ccaacacgtt ccaagtaagt caagacttgg aaatagtcac gaccagcaac
     2821 caaggattct ggattcttct tgatttcttc tgttgttaat tcttggatgg ctgaataaaa
     2881 gtcattgacg atttcgtcac gagctgccac ttcataagca acctcaacat cagagtttgc
     2941 tagatatagt tcgagcgttt cctcaacaag tttgcgaact tctttcccca ttttcttgac
     3001 ttcttcctcg actacaggaa tgcgaacttc gcccttcatc cgaatagcag cttttgcaat
     3061 agacacagca tgatccccca tacgctccaa gtcgctggtt gcttttaaaa cagtgataac
     3121 actccgtaaa tctgtagaaa ctggttgttg aagggcgatg atttcaagtg attttttctc
     3181 caatttcact tcgaaagcat taattttctt gtctgcttca atcacttctt tagccaactc
     3241 acgatcatgt gttgtaaagg cacgaacggc attgttgatt tgtgccaaca cttcgttccc
     3301 catggcgtaa aattggttat gaagttttcc taattcctct tcaaattgag ctcttaacat
     3361 gtgaacctct ttctttttct tataggcctt agccgaactt acctgtaatg tagtcttctg
     3421 tttctttatt ggcaggattc aaaaacattt cttttgtcag attgtattct atcaaatcgc
     3481 catcaaggaa gaaacctgtt cgatctgaaa tacgtgatgc ctgttgcata gaacgtgtta
     3541 ccagcaccat tgtatactta tctttcagac cataaagtgt gtcctcaatt ttaccagctg
     3601 agattgggtc aagggctgaa gttggctcat ccaacaaaat aatttttggg cttgttgcca
     3661 atacacgggc cacacataca cgttgctgct gaccacctga aagtccaact gctgagtcat
     3721 gcaagcgatc tttcacttca ttccaaatag aagcaccaat caaagaacgc tcaactgctt
     3781 cgtccaagac ctgcttgtcc ttgataccgt taatacgtaa accataaacg acattctcgt
     3841 agatagacat cgggaatggg tttggttgtt ggaataccat accgatttcc ttacgaagat
     3901 caacagtatc cgtacgagga ctgtatatgt tctttccgtt gtaatcaatc gcacctgtca
     3961 atgttacctc tgggtttaaa tctcccatac ggttaataga acgcaagagg gttgacttac
     4021 cagaaccaga tggtccaatc aaagcagtaa tttcatttgg atagaaatcg attgacacat
     4081 tattcaaggc ttttttcttg ttatagtaaa cagacaaatc ttttacttgt aaaataggtg
     4141 atgtcatttg ttccctttct atccaaaatg tcctgaaacg tagtcactag ttgacttgag
     4201 ttttgcattc tggaatacgt ttgctgtctt atcatattca atcaagtcac ccagatagaa
     4261 gaaagctgtg taatcacttg cacgagctgc ttgttgcata ttgtgcgtaa caatgataat
     4321 ggtgtagtcc ttcttcaatt caaacatagt ttcttctaac tgcatagtcg caatcgggtc
     4381 cagggctgat gcaggctcat ccataagcaa gatttgtggt tttacagaga tagctcgtgc
     4441 aatacacaaa cgctgttgct gtccacctga taaggtaaag gctgacttgt gcaagtcatc
     4501 ttttacctga tcccaaaggg ctgcttgttt cagagaagtt tcaacaatct catccaaaac
     4561 ctgcttatct ttcacgcctg cacgttcatg tgcgaatgtg atgttgcggt aaatagattt
     4621 tgcaaatggg ttgggacgtt ggaataccat tccgatatgc ttccgaattt cgtaaacgtt
     4681 catatctggt ctattgatgt cgattccttc ataaagaatt tgaccggtta ccttagcaat
     4741 atcaatagta tcattcatac gattaagact gcgaagatag gttgatttcc cacaccctga
     4801 tggtccaatc aaggctgtaa ttttattttt ttcgaactgc atatcaatgc ccttgatcgc
     4861 ttcattttta ccatagtaaa catgaacatc ttttgttgaa agggcgatat tctcctctgg
     4921 aaaagtaatg atatggcgtt cattccagtt gtaatctgcc attttttctc cttataagtc
     4981 agacttctag gctgctgaag tcattttcgc atgaagtttc ttaccgatat atcgtgcaga
     5041 aaggttgaaa atcaagatga ataccaagag gatggctgct gaaccagctg acacttgagt
     5101 tgcatctgga attgtacctt cgctgtttac cttccagata tgaaccgcaa gggtttctga
     5161 ttgacggaag atagaaatcg gactagtaac actcaatgga ttccagtttg accagtcaag
     5221 agctggagct gactgaccag ccgtgtagat aagagctgct gcctcaccga agatacgacc
     5281 agatgccaag acgatacctg ttacaatccc tggaagtgct tctggaataa caacatggag
     5341 aacagtttcc caacgtgata gaccaagagc caatcctgct tcacgttgtg tatggtgaac
     5401 gtgacgaagg ctgtcctcta cgttacgcgt catctgtggt aaattaaaga ctgtaagagc
     5461 caaggcacct gataagatag aaaaaccgta ctcaaactgt actacgaaaa tcaagtaacc
     5521 aaacaaacca acgacaacgg acggtaggga tgataaaatc tcaatacagg tacggataaa
     5581 gttagtcaat ggaccttttt tagcatattc agccaaataa atacctgcac cggttgacaa
     5641 gggaacagaa attaagagcg ttacaaccaa taggaagaat gagttgtaga gctgaattcc
     5701 aataccacca ccagctttgt aagatgaaga tttacttgtc aaaaaatccc agcttacatg
     5761 tggcagacca cgtagcaaga tgtaaagaat cagtgacgtc aagataacga caatcacacc
     5821 agcgattgag taaagaatac cagtcgccaa tttatcaaat tttttagcgt gcatagtttt
     5881 tcttaccctc tcttgtaata aatttcataa tcatgttaaa gataaggctc atcaagagca
     5941 agactagggc caaggaccat aggacgttgt tctgaacagt tcccataacc gtattaccga
     6001 tacccattgt caaaacagaa gtcaaagtcg ctgctggcgt tgtcaaggaa gtcgggataa
     6061 ccgcagagtt ccccactacc atctgaatcg ccaaggcttc accaaaggca cgcgccatac
     6121 caaagataac ggccgtaaaa atacctggct tagcagcatt caagataaca cgccaaatcg
     6181 tctgccaacg agtggcaccc attgccaaac ttgcttcacg gtagtgacga ggcaccgcac
     6241 gcaaactatc gaccgtcata aaggttactg tcggtaaaat catgacaaag aggacaaata
     6301 cacccgacaa gataccgaaa cctgttccac cgaagattga acgtacaaat ggtacaacta
     6361 cttgcaaacc aatgaaacca tatacaaccg atggaatacc gaccaaaagt tcgataacag
     6421 gttgtaagat ttttgcacca cgttttggtg atatttctgt catgaagacc gctgcaccga
     6481 ttgcgatagg ggtcgcaaca acagctgaca gaatcgtaac aatgaaagaa cctgaaatca
     6541 ttggcagggc accaaatatt ttcgagcttg gttcccactt gcttccaaat aagaaatcag
     6601 tgatgctcac accgtcaaca aagaaagtcg ataatccacg ctgtgcaacg aaaatcaaaa
     6661 tcattgcaac aataaagaca atcaatgaca gacaaaggaa tgtaattacc ttaccaaact
     6721 tctctaatcg agagttttta gatggagacg ataactcttt tgctagttgt tcgtttttca
     6781 tgcttactcc ttctcagaca ccgtgccatc agcacttttc acaactttca tatcgttgat
     6841 agaaatgtat cccatgcttt caacgatacc atcttgaacc tcatctgaca tcatgtaatc
     6901 taaaaattct tctgtcaaat cagtcgcatt tcccatcgta tacatatgct cataggacca
     6961 aattggccaa tcatttgttg ctacattttc agcagttggt tcaaaaccgt ttagcttaat
     7021 tgttttaacg gaatcatcca gataagcaaa tgataggtag gaaattgcac ctggtgtctg
     7081 agcaacaata gattttacca taccgttaga atcttgttct tgactctgag ttgcggtttg
     7141 tccatccatg ataacactat caaaggtcgc acgtgaacct gaactagctg cacggttgat
     7201 gattgaaatc tccaaatcct tgccaccaag ctccttccag ttggtaatct caccagtgaa
     7261 aatcttacga agatcttctg tggtaatatt atcaactgtg actttttcat tgacaatcac
     7321 agcaagacct gcaacggcaa cttgatggtc taccaatttg ctggcatcaa tcccttcttt
     7381 ttcctcagca aatacgtcag agttaccaat ctgaacagct ccagactgaa cttgtgacaa
     7441 gccagtacct gatccaccac cctgaacgtt gacggattta ccgatattga cactaccaaa
     7501 ttcatctgct gctgcctcaa caagcggttg aagcgctgtc gaacctacgg ctgtaataga
     7561 ctctcctcga tcgatccaag aagaacaacc tgaaagagcc atactactca aaagaaacaa
     7621 agctgcaatt ccaagcttct gctttttttt catttcgttt tttcctttac atttttcagt
     7681 ggaatctcct tatgatttcc ttgtatttta caaggaattt acaagttatt tccactcatc
     7741 cactatatca tataaaaaga caagttgcaa aaaaaatctg ctgatttatt ttaaaatctc
     7801 aacccttttg gaaagccgtt tttaagcgtt ccagatacaa tttttgcgaa accaagaccg
     7861 ttcccctgaa ctgctacctg ataccagcca ttagctaaat ccttggacac agctattgta
     7921 tgtcctgcag tataggacga gaattcttct gagctgattt ccactcgatt tttaacctcc
     7981 gaactatgga gtgctagacc taaagcaaaa cttggttcaa atcttttttt cttaaacgtc
     8041 cccaagtgaa gaccatttcg agcaatcttt acttttgaca aatcaggaag gccgtgtggc
     8101 agtaggtaga gattgtcgcc aaaaacctgc agtaaaccat ccaattgaac ccttaaatgc
     8161 ttctgttcaa attctttcca gagagattgc tgttctctat tcaaattgga ttttcctggt
     8221 tttaattttt tctgactgga ttctcctaga aatctaaatt tggcaacgaa ctgaccttct
     8281 cctgcaaaat ggtggggata catacgagca acttctggat aaccgactcc ttctaccatt
     8341 ccattgattt taggaatgtc tattagttcc aaatcatact gttctaagag ccacgtcact
     8401 acttcttcat tttcctctgg tgaccaagtg caagtagaat aaatcaattg accacctgga
     8461 gccaacatgt tcaaggccga ttctaaaatt tcacgctgta agcttgcaca ttgtgctgga
     8521 taatgtttgg accaatattg aatcgcatcg gggtcttttc gaaacatccc ttcacctgaa
     8581 cagggagcgt ctaggacaat catatcgaaa tatcctggaa agaccttttc caagcggtct
     8641 gctgattcat tggtcacgac tacatttctc gccccgaaac gctcaatatt ttcagccaat
     8701 atttttgctc gtttgttaga aatttcatta ctaaccaaga ggcccgtatt ttctaagtat
     8761 gaaagcaagt gagtagactt tcctcctggc gctgctgcca agtccaatac tttcatccct
     8821 ttttccgggg ctgcaatctg accgacaacc tgtgcagctg gctcttgtga gtagactaag
     8881 ccagttacat gttctggaga cttccctgaa actttaccat agtaagacca aggcatatct
     8941 ggaattagtt gctcaaagtc caactgattt tcctttagcg gattgacccg aaaacctgaa
     9001 atagctggct catcaaagct ctcaaaaaat gcttgggctt cactaccaag caaatgatta
     9061 tatttatcta taaaatcctg tggtaattgc attagaatat ataccccttc acttcctcaa
     9121 gatgggattc tgatactagc atgacaaact ctcgcttatc ataggccaga ttcggaccat
     9181 caaaacttaa catgactaag cctaaagagg aaccaataat actggctgct gcgtagtccc
     9241 atggacacag ataagaagca taggcaaata atcttccttc cagaacgtgg gcgaaaccaa
     9301 tcccagcgct tcctacagat cttgtaccta aactttgatt tgctaattct gccactccat
     9361 gtgcattgcc tgcatacaac tttgcattga ttcctatcaa actctggcga agagggcgca
     9421 gctctggttt ctttaagcgt tcttgattgc aataaacagg gaatgaatct cctccatgga
     9481 aaagtttgtc tcgcatgaca tcataaatga taccgaactt tcctactcca ttttcaaaat
     9541 aggcaatcat aatggcaaaa tcagttttct gagcaataaa atttgtggtg ccatcaattg
     9601 gatcaataac ccaaacattt ccctcatgaa tagaagaaac gtccccacct tcctcgccta
     9661 aaatcccatc accttgatag cgagattgaa tctgtttagt caacatttct tgcacttgtt
     9721 tatcaaggtg tgttaccaag tctgtaaagt ctcccttttc ttcaatctga agattatcat
     9781 gtaaatgctg tcggagaaaa tttccagctt ccaggacaat cgtttgggca aagtgatact
     9841 tagtttccaa aacgaataac tcctttccct ttatctcgag cagccttaac aactcgatag
     9901 gttgaataac cagaaactgc ttcaaagtca cgatcaattt gacgttcctg tcccttactt
     9961 ttaacaacat ctttgaagct tttataacta gctaatatag ctaccgcatc tgctcctttt
    10021 tcataagctg cctccacctg attcaaaaaa gaaagcacgg aggaaatctc ctctgtgctc
    10081 cacgaaaaat caagtggata tgaataattt ttgttcatat ctgttatctt tcttatccta
    10141 tttctgctct caatgtagca ttttttagtt cttgtttgcg atacttccgc ggaagaaatg
    10201 cacgaatttc atcttcgtta aaaccaatct gcatccgctt ctcatccaaa ataatcggac
    10261 gccgtaagag actcggatag gtttcaatta acccaataag ctgcttcaca gaaagctcat
    10321 caacatcaat atctagcttc tgaaaaactt ttgaacgggt agaaatcaag tcatctgtcc
    10381 cattttctgt caatgctaaa atgttcttta attcctcagc agttagaggg ctagtcataa
    10441 tattgtgctc aataaaaggg acttcgtgac ttgtcagcca agcacgagct ttacgacaac
    10501 tggtacaact cggtgacaaa aataaagtaa tcatgtcttc catcccctct aaaaacattt
    10561 ttcttcttat agtatactct aacttaaaag agttttcaat agtaaatcta ctctcttccc
    10621 tgtaattttt ccaaagattc tatttttttc tctaagcgta gcaatatttc gttttgttca
    10681 tctatttttg ccatcaaggt atccaacttc gtttcacgct ctgtttcaga gaaaaaacga
    10741 gttattgtag aggtaaccat accaaaagta caaataccaa ccaacatcaa gaggatggct
    10801 ataattttag aaatcgtatc ttgggggaca atatctccgt accctacagt tgtcatcgtt
    10861 acaatggacc accaaagtgc atcaaagaat gatttccctt caatcactga tagtaagaca
    10921 cttgcaacta gcaccgctga gatatttaac atcaacactt tggataaact gttggtatgc
    10981 aatagcttgt tgattgtatc ccaaaatcga ttagacaggg caaatattct cgttactttg
    11041 actaatctga agagtcgtgc aagtcttccc aagcgaagaa aactgaagaa taaatcgaat
    11101 ggaataatag caattaattc taagatatgg tcctgtacat attcaagtat gtcatccgca
    11161 taataaagct gagcaaaata atcgcagaca aaaacaaacc ataagagcaa gtctagtacc
    11221 cgatacccac tagaattagc aatattagca tccatcaatt caagtacgat aagacctaca
    11281 tagactacag ctatgtaggt catagccttc tcataaaaag gatgacgaat caatcgttta
    11341 agcatatttc tcccattgca aggcaaattc ctcatcagat ttcatctgct ccatcaaacc
    11401 ttcaatcccg tcaaatttga ccatatctcg aattttttca agccaaaaaa tagttatttt
    11461 ttctccgtag ataaagcggt caaagttgaa aatatgggcc tcaatccgca tctccgttcc
    11521 atcaaaggtc acatttttcc caacgcttgt catagctcga tagcgttttc catctacttc
    11581 gacatccgcg acgtagactc cctcagatgg taaatggaca cggtcaaaag gtgccagatt
    11641 tgcagttgga taaccaatag tgcgccctct ggcatctcca tgcaccacaa taccttctgt
    11701 cataaatgga taacctaaaa gttgattagc tagagagaca tcccctgact ggatagcctg
    11761 acgaatgcga gttgaagaaa ctttctctcc gcccaggctc acttcactta caatttctac
    11821 ctgaccacca aatagctctg tcaaatcttt gacatctgct ctgcaatttc cgaaatgata
    11881 atcgaaacct gccactaaga cttgtgcgtt caaccccttg atgtagcgtt ctaaaaactg
    11941 ctgaggagta ttgtttgcaa actcactggt aaaatctgtc aaaaccagct ggtctacacc
    12001 gtattgctcc aacaagtggt aacgctgatc ttgactggtc aaatgcagta aaagttctgg
    12061 gctaaagcga gaaaaagcca atcgaggtga ctctggaaag gtcagaacag ttactgtcaa
    12121 tcctttttca tctgcaactt gtctagcacg gtctaagagg gccttatgcc ccaaatgaat
    12181 cccatcaaaa tagcctaata ccaaaacagt tggtttttcc tgatggagtt cttgataatt
    12241 ttttatcgtt ctaatcttca tatcgtttat tttatcacaa ctaggctaaa acttcttcta
    12301 gaaaaacctt acgaggcttg taaacttggt cacgtttttc catgattgcc accagtttct
    12361 ccttatgaaa acctgccaac aattccgcct gactatctaa ggttataaaa cgaccatatc
    12421 tagcctcaat cacttgctca atcgtcaaat caacaatggg caagtcacca attccctgct
    12481 caatggggcg gaggaaggaa taatcatttt gagtaacctt gtcagcaatc tcttcaatgg
    12541 tcaaggcatc agccaagctc atacctgctg aacctgtccg ctctagcttg gacatatggc
    12601 tggcataacc tagtttagct cccaaatcaa cagacagggt acggacatag gtgcccttgc
    12661 cacagcgaac tcggaaggta aaccgtgcac agtcatctgc tcgttcaatc gggctagtcc
    12721 gttcaaaact gtaaatctca atttggcgtt gaggacgctc aacttcttca cccgcccgtg
    12781 cgtattcgta gagtttgcgg ccgtttactt tgacagcaga gtacataggc ggaatctggg
    12841 taatagtacc gacaaaacta gccatagcct catcaactgc ctgctctgct atgtccaaaa
    12901 tcggtgtctg ctcaacaatc tcaccagaag catcctctgt cgtggtcgaa tagccaatgg
    12961 taatctcccc ctcgtagatt ttcccctcat cctgcatgta ctcaatcatg cgcgtggcct
    13021 tgccgactgc aatgggcaga acacctgtca catctgggtc caaggtcccc ccgtgaccaa
    13081 tcttcttctc ctgcaaaatc ttgcggagct taaaaacaac atcgtgcgag gtcatgcccg
    13141 cctctttttt tacgttaata attcctgaaa tcattcttcc attataacac aaaggaccgc
    13201 tcttgtgggc ggtccaatat caatcactca tcataaaaac ggtagctacc gaatgttgta
    13261 ccaatcaaat tctcaagttc cttgtgaata cgtcgcatgg ttccagaagg ggcgacttca
    13321 tatgtaacag cctcatcaat tccggtctct tcctcctcat catagcccca agaaaacatc
    13381 aacggagcat cataatggtc tttgtcacca aattttattg ttgaccactc caatagcttg
    13441 atttctttca aaaattctct aaattttttc accttgcttt tacgaatggg agtaaaatct
    13501 accgtatctt caactcgatt atctgcacct atatattcaa tcatataatc ctgttcccta
    13561 agactgaccg caacatctac gctctttcct tcaatataat aatccttaaa aagaataaag
    13621 tctatattct catatgtacg ttcaaattgt ttcatgttct ttcccttcaa aaatgactaa
    13681 actagagttc ccgatgaaaa tcgctatcaa tttcaaaaaa tggttgaata tcctgaacat
    13741 actccaaaac gccttgaaac tctcctcggt tatcacacac tgccttatag accacataga
    13801 caaacttgcc catgctctcg gacttgaacc acatggtgac ctggtctttt tgtcctgtgc
    13861 ggagcaagtc aaaaattttc ttgaccttgt ccactatttt gggaggatgg cagagctcca
    13921 catggcgtcc aatctggctt ggcgttcgtt tgaaaatcat gtcttcaaca gggtggctgt
    13981 cattgtagta ttggaaaatg tcatcatgtt cattgctatc ttcctagtaa tccatccaat
    14041 atttcgatca atttttcttt ttcctgactc tcatttgttt taaacctgat tagagggagg
    14101 tcgcattttt tcaaaatgtt atccttcata atatcacgtt caaactgctt agaattacct
    14161 ttgtggaatg catatccatc tacttctaca gcaagtacag gggctttggt aagtctatta
    14221 attatcaaaa aatcaaggtg cgtatttcca tgccttgcat acttggcttc cacttctgtt
    14281 agtcgagtaa aatccttcac aagattatgc agtttatagc catgtataac atctaaacta
    14341 ttatattttt catcgctcat aaacacttcc ctaatccgat gatacattaa attctcagaa
    14401 tcatatcgcg atatccgttt tcgttttcta aaatattcct ccttttcttg ctcatactgt
    14461 ttgtataagt aatcgaagat ggaatatata gggctctctc ttacttcaaa attattatat
    14521 tgtatatatc ccaataaatc actaatattt ttatctaacg attgctcatt cccagtcatg
    14581 acaagaaata atttattttt agctcttgat atcgccacat ttagtaagta cggatcatcc
    14641 gtaaaacgtg ttatgctgtt atcaaccgtg gagatgatta tcgtatcttt ttcttttccc
    14701 tgaaacttat ggactgtatc actttccaaa tcatcaattt gctcttgcaa cttctctttc
    14761 tgctttcgat aaggcgtgac aactcctgtc cgctcccgat agatttcata atttggaata
    14821 acatctttca gaattatatc aatctctctc tgactatagt gatctcgagc gtggtttccc
    14881 ttaggtgttc taatagcctg aagaacatct ttttccccat tatcacctgt cataatcact
    14941 aagtcaccat tataaaactt ttgattgcag aaattgataa ttttgggatg acatctataa
    15001 tgctctcgta atagcgtttc tggaatattc ggaatcactt ttagtaccga ttgaagaaaa
    15061 ctgtttgtgt attcataacc actatgaaca ccgtatttat ggaaaagctg agcactactt
    15121 tctttaacat cttttgtgac aatatgcggt agctgtttac tatctccaac aactacaaca
    15181 tttttagcac aggataatgc tagtgcccca gttgtaatat ccacttgtga ggcttcatct
    15241 atgattaaat aatcataggt aatatccttt cctaaacttg ttgttgatga aaatgttgta
    15301 ctaagaacaa taggatattc tagaagaact cgtttcgatt gttcccttaa atcttccttt
    15361 gtaaactgta ctctatttct ttcattccca tacttactaa ctagaa
//
LOCUS       DASGAC010000037        15359 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.037, whole genome shotgun sequence.
ACCESSION   DASGAC010000037 DASGAC010000000
VERSION     DASGAC010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 15359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15359
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.037"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(131..1363)
                     /locus_tag="U1335_000889"
     CDS             complement(131..1363)
                     /locus_tag="U1335_000889"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231383.1"
                     /translation="MTIRLQLKRGGVSMFLVVITCSLVALMVASFLRLTIRDQQQASK
                     HDLSQSAYDSAQVGIEDAKRFLSIYQKECAGGFDLTSIKCQKMEAEISKTGAAGSCNM
                     LHAAGIGAATGESVVLTRDGDESLNQAYTCVKIHRDTPDYLGKADAGKAHIIPLKGIQ
                     NFSKVRLSWHTTEDMTNKDRNVWLNTVNRLEDGEEGNHLLLNRSEWNKKENVPAILKA
                     QFFGYNQGANGDIYNGLDNDSFAKNGNGLSEQIYYPAQGAEAHLEHSLPASRRGDSKA
                     LRTNNVSLVRCKEDFARTGGLYACSVTVKLGHAVQANDIAFLRLTPFYRGANFKLELL
                     DDGNNIVNFRGVQPKVDSTGRANDQFRRVESRLTFDENYLPVPDFAVQVEGTETPLCK
                     DFWVSHMKNSGQAHLECK"
     gene            complement(1365..3971)
                     /locus_tag="U1335_000890"
     CDS             complement(1365..3971)
                     /locus_tag="U1335_000890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231384.1"
                     /translation="MSKKLFGIFLAFGVFFIFFGGSSAFATHAPQEIVNELTQKCNGG
                     EYHERDYFGRQRKESFDDYGYNNVITTSWISSDSSGLDIINSLGKKVEYTLPSNQRYI
                     YLNFASRLCRVHHANHTITRAKILNDGGERGLKVNKPYAISDSNNGYYFAYSQSGLYN
                     VKRVGTIRIEITNERIESLRSAPAASKSKPNSRWLRFRVGHGVLNYHATSVPPGKAPG
                     GYYDHDYYYETEFSLLVNIGEKPNPKPQPTPTPPPSSSHSAQTYVKSTSLRGWHSGRE
                     NLGKYGDSVSFNHIVTTNFQNSVPSGGIDTSTKNHSWSNENGEVSPRGGSFSGSDINR
                     NSGTIVAKDQYLGKYVCDRTHYKYSFSPSYKSYDIIGYHDKRDKNGKYLGKDYSRPIR
                     SWVHHGGLASVQNGTGISPQEACVYIPYEYEVIPCVSTGSQYCGGDDIPSERGTRIHT
                     TQKITNNGTPTPEDSKVAITTWEVPQNEESHLTQGGSAGYINSSNPCTHYRYTFKYPP
                     TTLRNCHEDIRTGRIPDGETTVGSHVINIPDDAPVGTRFCVALSVTPYKKTKPSSSGS
                     LKSQQDNQKEWRHSAPICVLVVKKPKMNIWSNGIYSKSGIRTSRTTKVSGAQFGSWAE
                     FEALAGKKITGFTTESSHTTHNLTFKNAVPSGASKTTKTTDLGSYGAWGEDTNISYIV
                     TALGARFSKNVPERNITVEGSQTKPLAKKVITGLTNQLASTRVIYAKDVEITGNIVSQ
                     SPSGRLDLGRIPQTIIVSSGDIKIGSDVTQIDAWLISEKTVTTCAKPVSSGLSVNTSF
                     VSDATCGKPLRVNGPVVANKLNSWRTAGTDGEPAEVYNQRPDIYMWAFGQASWIQGLI
                     TTTYTKELPVRY"
     gene            complement(3964..4425)
                     /locus_tag="U1335_000891"
     CDS             complement(3964..4425)
                     /locus_tag="U1335_000891"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231385.1"
                     /translation="MENQVLGGNTPAKTTSKKPFFAVLVAILLLASLGANVYLLLTRP
                     KESKIGTICGDEIIKEYNDFYETTENYDEDKKQIISKVQGLANYKEDANCVMLEAILV
                     RDKKASYETLLKLVENGENPSLKIREIQDLNSLENSVKTIILDDVKDEQDV"
     gene            complement(4545..5585)
                     /locus_tag="U1335_000892"
     CDS             complement(4545..5585)
                     /locus_tag="U1335_000892"
                     /inference="COORDINATES: protein motif:HMM:NF012948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5231386.1"
                     /translation="MNKKFLKFGVALASVAVLGGVPSALIATQNESIVYAEEVTPPTD
                     NGSVQDVPSVQSKTFIVYMFIRRGPYDFGAGSEEIILKPGESYTFKLPDGFELVDATQ
                     KLTYAYDEVEEGRIYKVITRHKVTTPPSDNGSQTPPTDNGEQMPPSNSDKPDDGNGSQ
                     TPPSDNGSQTPPTDNGEQMPPSNSDKPDDGNGSQTPPSDNGSQNPPSNGEKPKDDVPK
                     GQPTPPTEQPKDTPPSNGDNPKDGNGKNGQTPPSNNQTPPSSGDGSKGGNGSAQVGGN
                     TSKSVEKPTGNATVASAKTSATSTTQTSNATTEAKALPHTGDSTSVWTTLLGFITLLG
                     VAFSLKFNTKKR"
     gene            complement(6002..6616)
                     /locus_tag="U1335_000893"
     CDS             complement(6002..6616)
                     /locus_tag="U1335_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEM5231387.1"
                     /translation="MKPDTINQLTIGYARVSSCDNRQELGLEVQVEALSHCDRLFIER
                     DSGGNDERTKLKKALKLAKKSARDGIETKLVIYKLDRLTRKMFKLLTIIEELQAHDIE
                     LISLRENIETKSLTGKLLCLLLGYVAEMELENIRSRTKDGLRKAKEKGIKLGNQGLSK
                     EKEDEIIELYRQKYKPFEIAQTCGVCRATVYRVLNRRKIKFHRT"
     gene            complement(6703..7803)
                     /locus_tag="U1335_000894"
     CDS             complement(6703..7803)
                     /locus_tag="U1335_000894"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231388.1"
                     /translation="MTRFRLGWFCYILQKCEKKKRNQEDFVNTVLNKLVGEGNPKTSF
                     IPEINRVSSNRIFTGEEEVPEYYREVLPLTDLDFQSQRISKVLSNLNKEETFHFRQVA
                     SKIKNALSEHAKEAKQVFGEEKLKKLHSAKEDEEYIAIMLIYLVNLPNIPTVDDEAKR
                     NAHIIQQTILRFLDNEIVLSLFPHRKHFENLFDFPEINKAFYLEFYSPNQLSQAKTQQ
                     NFGIPTLRFLLRERVDKIPLVQNGLILQNDVINERIQQFILDNFKDADSIVLLAGFYD
                     SFDIFCRSLQQYFPKEMSGTLFEMNKLVLSVRTRYDHTADSMKKMIETTNKVTDFLKQ
                     QRYTSKENTELVVGGMEELQSKELVFFCLVKL"
     gene            7919..8188
                     /locus_tag="U1335_000895"
     CDS             7919..8188
                     /locus_tag="U1335_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018166864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231389.1"
                     /translation="MSLTPSIRRNKEVQALQTIASPYQMEVARKLSQNMADNQARELL
                     ATDILYKVGNLALIQAEILKNNPEAHAYTDYILRAFTHYTTQYLK"
     gene            8198..8410
                     /locus_tag="U1335_000896"
     CDS             8198..8410
                     /locus_tag="U1335_000896"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231390.1"
                     /translation="MNIYSWILIISGVVLLFISVLGAYFEALDKENQPSYTEEEIALA
                     EYLEKKQAINGIYLEAVAEILRHQKR"
     gene            8568..8738
                     /locus_tag="U1335_000897"
     CDS             8568..8738
                     /locus_tag="U1335_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000733224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231391.1"
                     /translation="MKKLLAYILGFFACAWLVNQAVKLVLEVWQVLFWGAVFIFAGWF
                     AFRIIKIKKDWR"
     gene            8741..10948
                     /locus_tag="U1335_000898"
     CDS             8741..10948
                     /locus_tag="U1335_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000823104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system DNA-binding
                     domain-containing protein"
                     /protein_id="HEM5231392.1"
                     /translation="MKRHFNALSWSEWTWQRPFSEEDVKSLLGQLVGLTRRKSIVFEV
                     RLKKNHVRYLLGTEEQDKRHVHQLIQSHRQIQFSKAPKREKISVARLVQIKQSHYSLK
                     TDSLENMIRSSLALSKTIQPDEEIVLQLILGSGSPPKPQPKELPNLSARWYQVITNNI
                     PELSENSKKLMRQKLNQSTFRCEIRLGANSRSILRTKEFFSNLLSSFRMLETHATIEL
                     KPISASKINQAQPSWSFPYSLATTDLACFLLLPVGEENMDGVPNVHPKLITPPLGYNL
                     NHNKARSFGETIETQPRPLQISSQSAKKHLFLLGSTGTGKTTAMSHLILSDIKSKKHS
                     VVVIDAKGQLTHELLERTPAEHDEDIVVISPTAKRIVGINPFELTNYGIEPEVIADYL
                     LELFKGLYPEHFGIYSLDILSHAFLTLARIPNSSLVMLPSLLTNKHFRNKLLKNLTDP
                     IGLESFWSWFELLSEAQRHQMLNPILNKFRQFLLRPQLRAMLGQAQPKFSLAELFQGR
                     KIVLVPLNKAVIGSESAKLIGSLVTSILWMLILRQSSVEPSKRQSAFIYVDETPSFLG
                     IPNANLDEALSQSRQFNVGWAIGFQHLAQMSSNLKAGIESNTANKIVFGLNLNEAKEM
                     ANSTLEVTKEDFYSLPPFWVYSRIETSPNTYRWVIGKTYPPTPRIRDSRTPYLNSLIK
                     YGQNVDDLEREFQVFTYQEKLQTAESLDDLGRKKRSNRSSNRVDEEDSSSPVK"
     gene            11031..11831
                     /locus_tag="U1335_000899"
     CDS             11031..11831
                     /locus_tag="U1335_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015605334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-relaxation family protein"
                     /protein_id="HEM5231393.1"
                     /translation="MKWNQLTTQDIQILYFLNQARYATTNQLARLFYSDSDKPETAIR
                     RANFTTQRLLKAGLVSHLKRRIGGVRKGSASYVWQITFQGLKLLKSQDETIVLRYKNH
                     YEPSQHHVEHTLAVTEIFVETMETVRDSKKLSLEAFSFEPNSWRSYQKLSGLGMTLKP
                     DAYLELVSQEYEDHYFIELDRSTESLARIVNTCKKYIEYYRSGVEQRQHGVFPFVLWI
                     VPDDKRKLAISKTIQKELYNFWELFTVITLDDYQNYIKGGIDELEKSR"
     gene            11809..11976
                     /locus_tag="U1335_000900"
     CDS             11809..11976
                     /locus_tag="U1335_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013990925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231394.1"
                     /translation="MNLKNQDKDSITSSHTKHEKKQIGRTTYFICHYFTGNRPLENVL
                     ERLILSDKSLL"
     gene            12037..13734
                     /locus_tag="U1335_000901"
     CDS             12037..13734
                     /locus_tag="U1335_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015605332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4368 domain-containing protein"
                     /protein_id="HEM5231395.1"
                     /translation="MNRTLTISDYRQVDTSRLSDITVVYCRLSQDDGLDGDSNSIINQ
                     KNILLEVVAREKLPNPVLFVDDGFSGTNFDRPAISEALRLVENGQVSNFIVKDLSRLG
                     RSYIKVGQLTEITFPSFDVRFIALNDGIDSNKPNETNSIFLPIKSLMDEMYAADTSKK
                     IRAVFQAKAKSGVPVTTNPPYGYLKDPSNPKNWIIDPVASEVIKRIFQEAKSGKSLSE
                     IAKGLESDKVFKPDRHRIEIGLKSISSSPNVEALPYFWTRETLSAILGREEYLGHTVN
                     LRTRTKSYKDKRSIDLPREDWLIFKNTHEAIIDQETFDIVQKMRSHKRSNQRYKNRLG
                     HENLFAGLVFCGTCGRKHYFCPFESKTGLNHDHYKCSGYRRPIDGCENPHYIQKSAMI
                     EIVSDKLRQVISEAQLDRENFLKKLEQQSKAQFSKDNKRQRQQLQKDEYRSKEIDRII
                     QQLYEDNLLGKISDERFMKLSQTYEEEQKQLQTSISDLTEKLAKQQEDSLNISKFMTR
                     ISKYTEVSELTVEMVNELIDKIVIHKPTGTKRNRIIQIDIYYNFIGKLNIEKASQAD"
     gene            complement(13902..14972)
                     /locus_tag="U1335_000902"
     CDS             complement(13902..14972)
                     /locus_tag="U1335_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000179397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5231396.1"
                     /translation="MASYRKRENGLWEYRISYKTIDGKYKRKEKGGFKTKKLAQTAAL
                     DVEKKLTQNILTDGEVTLYDFVKTWSEVYKRPYVKDKTWETYTKNFRHVKNYFQEMKV
                     KDITPLYYQKKLNEFGEKYAQETIEKFHYQIKGAMKVAVREEVIRFNFADDAKVKSQI
                     EIRDEENDFLEEHELKALLALTREKVRYVTYFTLYLLAVTGLRFSEAMGLTWNDVDFE
                     NGILDINKAFDYSNTKDFCALKNDPSERKVPIDSKTIEILREYRKNHWQANIKNRICF
                     GVSNSACNKIIKRIVGRPVRNHSLRHTYASYLIFNGVDIVTISKLLGHESPDITLKVY
                     THQMEALAERNFEKIKNIFLVA"
BASE COUNT         4434 a         3278 c         3043 g         4604 t
ORIGIN      
        1 tatttattat attcttttcg aaaataatta aatataagga aatagaactt gaaatgagtc
       61 ctgttgcttg cttccgaaaa ggctggcgtt agatagaaga gaaaattcac ccaacgccaa
      121 ccacgccgat ttacttacac tctaaatgtg cctgaccact gtttttcatg tgtgaaaccc
      181 aaaaatcctt acaaagtggt gtttcagttc cctccacctg aaccgcaaag tctggcacag
      241 gtaggtagtt ttcgtcaaag gttaggcgac tctcaactcg gcgaaactgg tcattagcac
      301 gaccagtgct atctaccttg ggttgaacac ccctaaaatt cacaatgtta ttgccgtcat
      361 ctaacaattc tagtttgaag ttcgctcccc tgtaaaaagg cgttaaacgc aggaaggcaa
      421 tatcgttcgc ctgaaccgcg tgccccaact taaccgttac actacaggca tataacccac
      481 ctgttctggc aaaatcttcc ttacatcgaa ccaagctgac attgttggtg cgaagagcct
      541 tgctgtctcc tcggcgactt gcaggcaggc tatgttctaa atgagcctct gctccttgag
      601 ctggataata gatttgttcg ctcaagccat taccattttt cgcaaaagaa tcattatcca
      661 aaccattata aatatcacca ttcgctcctt ggttgtagcc aaagaattga gcctttaaga
      721 tagctggcac attttctttc ttattccact cacttctatt aagcaggagg tggttgcctt
      781 cttcgccatc ctctaagcgg ttaaccgtat tcaaccaaac attgcggtct ttgttggtca
      841 tgtcttcagt cgtatgccag ctaaggcgga ctttcgaaaa gttttgaatc cctttaagag
      901 gaatgatatg tgccttacca gcgtctgctt tgcccagata atctggtgta tctcggtgga
      961 ttttgacgca ggtgtaggct tgattgaggc tttcatcacc gtctctggtt aaaacgacac
     1021 tttcgcctgt tgccgcacca attccagccg cgtggagcat attgcaagac ccagccgcac
     1081 ctgttttcga aatctctgcc tccattttct ggcatttgat tgaggttaaa tcgaacccac
     1141 ccgcacactc tttctggtag atactcaaga aacgtttggc gtcttcaatc cccacctgag
     1201 cgctatcata agcgctctgt gagaggtcgt gcttgctggc ttgttgttgg tctcgaatcg
     1261 tcagacgcag gaaactagca accatcaaag cgacaaggga acaggtgatg accacaagaa
     1321 acatagaaac accacctctt tttaattgta atcgaatcgt catcttaata cctcactgga
     1381 agttcttttg tataagttgt tgtaatgagt ccctgaatcc aactagcttg tccgaatgcc
     1441 cacatgtaga tatctgggcg ctggttgtag acctcggctg gttcgccatc tgtacctgcc
     1501 gtgcgccaag agtttagctt gttggcaaca actgggccat tcaccctgag aggcttacca
     1561 caagtagcgt cagacacaaa gctggtattg accgaaagac cagatgatac gggcttggcg
     1621 caggtcgtaa cggtcttttc agaaatcagc caggcatcga tttgggttac atcgcttcca
     1681 attttgatat ccccactaga gacgataatc gtttgcggaa tgcgtcccaa atctagccta
     1741 ccacttggcg attgcgagac gatattgcct gtaatttcca catccttggc ataaatcaca
     1801 cgggtcgaag ctagttgatt tgttagacct gtgatgactt ttttagcgag tggcttggtt
     1861 tggcttcctt caactgttat atttcgctct ggaacatttt ttgagaaacg cgccccaagg
     1921 gcagtgacta tataagaaat gttagtatct tctccccaag cgccatagct tccaaggtca
     1981 gtagttttag tagtttttga tgcaccactt gggacggcat ttttaaaggt caagttgtgt
     2041 gtggtatgcg aagactcagt cgtgaagcca gtgattttct taccagccaa ggcttcgaac
     2101 tctgcccatg aaccaaactg agccccacta accttggtcg ttcgactggt tcgaatacca
     2161 cttttcgaat agataccatt actccaaata ttcatcttgg gctttttgac cactaggaca
     2221 caaatcggag ctgaatgtcg ccattctttt tgattgtctt gttgggattt caagctacca
     2281 gacgaagatg gctttgtctt tttgtaaggt gttacagaca aggcaacgca aaaccgagtt
     2341 ccaacaggcg catcatctgg aatattgata acgtgcgacc cgacagtagt ttctccatcc
     2401 ggaatgcgtc ctgttcgaat atcttcatgg caatttctta aagtggttgg cggatactta
     2461 aaggtatatc tatagtgcgt acaaggatta gaactattga tatatccagc agaacctccc
     2521 tgtgtcaggt ggctttcttc attttgtgga acttcccaag ttgtgatagc cactttggaa
     2581 tcttctggtg taggtgttcc gttattggtt attttttgag ttgtatgaat gcgtgtgcct
     2641 cgttcacttg ggatatcatc accaccacaa tattggcttc ccgtagaaac acaaggtatg
     2701 acttcatatt catacgggat atagacacaa gcttcttgcg gagagatacc tgtgccgttt
     2761 tgtacgcttg ccaaacctcc atggtgaacc caagaacgga taggtcttga gtaatctttt
     2821 cctaagtact tcccattttt atcccgttta tcgtggtagc caatgatatc ataggacttg
     2881 tatgatgggg agaaggagta tttatagtgg gttctgtcgc acacatattt gcctaaatat
     2941 tggtctttag ccacgattgt cccagagttt ctattaatat cacttccaga aaagctacca
     3001 cctcttggcg aaacctctcc attttcatta ctccagctgt ggtttttagt agaagtatca
     3061 ataccgccac ttgggactga attttggaag tttgtcgtga caatgtgatt aaagcttacg
     3121 ctatctccgt attttccaag attttctcgc ccactatgcc accccctaag gctggttgat
     3181 tttacatagg tttgagcact gtgactgcta gaggggggtg gagtaggagt tggttgaggc
     3241 ttaggattag gtttttctcc tatgtttacc aacaaagaaa attcagtctc gtagtaataa
     3301 tcatggtcat aataacctcc aggagcttta ccaggaggaa cagaagttgc gtgataattc
     3361 aatactccat gtccaaccct aaacctcaac catctcgagt taggcttgct tttgcttgcg
     3421 gcaggcgccg acctcaggct ttcgattcgt tcgtttgtaa tttcaattcg aatagttcct
     3481 actctcttga cgttatatag accagattga ctatatgcga aatagtaccc attattactg
     3541 tctgatatcg cataaggctt gttgactttt aaacctcttt cgccaccatc attaaggatt
     3601 tttgcgcgcg taatagtatg attagcatga tgtacgcgac acagtcgact tgcgaaattt
     3661 aagtagatat atcgctgatt agacggcaac gtatactcaa cctttttacc taatgaattg
     3721 atgatgtcta atccactaga atctgaggaa atccagctag tagtaatgac attattatag
     3781 ccatagtcat caaatgattc ttttctttgt ctaccgaaat aatctctttc gtgatattcg
     3841 ccaccgttac atttctgagt gagctcattc acaatctctt gaggggcatg tgttgcaaaa
     3901 gcgctactac caccaaagaa aataaaaaag actccgaaag caagaaaaat cccgaatagt
     3961 ttcttagaca tcttgttcgt ccttgacatc atctaaaata atggttttaa cactattttc
     4021 tagggaattt aaatcttgaa tctctcgaat ctttaaactt ggattttcac cattttcgac
     4081 caattttaaa agagtttcat agctcgcttt tttgtctcga accaaaatag cctcaagcat
     4141 tacgcagttg gcgtcttctt tatagtttgc caaaccttga actttggaaa taatctgctt
     4201 tttgtcttcg tcgtaatttt cagttgtttc gtaaaaatcg ttatattctt tgataatttc
     4261 atcgccacaa attgtgccaa tcttagattc ttttggtcga gtcagcaaaa gataaacgtt
     4321 tgcaccaaga cttgccagca ataaaattgc caccaaaacc gcaaaaaatg gcttttttga
     4381 tgttgtttta gcgggcgtgt ttccacccaa aacctgattt tccataaccc tccttaatta
     4441 tttatgtctc catttaacca caaacgcaat caaaattcaa gggcagaaat aagaaaaacc
     4501 ccacgaaatg tgaggctaga cttagttgat agatgattta ggaattatcg cttcttggtg
     4561 ttgaatttca aagagaaagc cacaccaaga agagtgatga agccaagcaa agttgtccaa
     4621 acagaggtac tgtcgcccgt gtgcggaagc gcttttgctt cggtagtagc gttacttgtt
     4681 tgagttgtgc tagtagccga agttttcgct gaagctacgg ttgcgtttcc agttggtttt
     4741 tcgactgatt tcgaagtgtt gccaccaact tgagcactgc catttccacc tttcgaaccg
     4801 tctccgcttg atggcggagt ttggttgtta gacggtggtg tttgaccatt cttgccgttg
     4861 ccatctttgg gattatctcc gttcgaagga ggggtatcct tcggctgttc agttggtgga
     4921 gttggttggc ctttcggaac atcatctttt ggtttttcgc catttgatgg aggattttga
     4981 ctaccattat cacttggcgg agtttgactg ccgtttccat catctggctt atcgctgttg
     5041 gatgggggca tttgctcccc attatcggtc ggtggggtct gactaccatt atcacttggc
     5101 ggagtttgac taccgtttcc atcatctggc ttatcgctgt tggatggagg catttgctcc
     5161 ccattatcgg tcggtggggt ctgactaccg ttatcacttg gcggagtagt tactttatga
     5221 cgtgtaatta ctttataaat acgaccttct tctacttcat cataggcata agtgagtttc
     5281 tgggtcgcat caactaattc aaatccgtca ggaagtttaa aagtgtagct ttctcctggc
     5341 ttcaggataa tctcctcgct accagcccca aaatcataag gtcctctgcg tataaacata
     5401 taaactataa aggttttgga ttgtacagac ggaacatctt ggactgaacc attatcggtc
     5461 ggcggagtaa cttcctccgc atagacaatg ctttcattct gcgtcgcaat caaagcagat
     5521 ggaacgccgc caagcactgc cacagaggca agagctacac caaatttaag gaattttttg
     5581 ttcattttaa tttaccacgg ctttcgaaaa gccgtccttt ctttttagat atagagaaaa
     5641 agtaaaaaac aaaaaacttc cgtcaggttc atcacaaaag aagaatcatc ttcaactggt
     5701 aatgtgcctg acagaagctc atctatcaac tgcctatcag attaccatat ttttatgtgt
     5761 ttgtcaatgg gtattttagg aaaagcctcc ttttcgaaaa aatgcctgct acaaaaattg
     5821 cttttgtcgc tcagacggtc gttaaagaga caactaaaaa aggaaaaatg cttgttctaa
     5881 gaatccctta aaaccaacat ttttccagaa gtgttcactt aaaatttagc tttctcccaa
     5941 acgaccgttc gggttacaaa ttacctatat tttaatatat tctgccgttt tcgtcaagga
     6001 tttatgtgcg gtggaactta attttccgcc tgtttaagac ccgatagact gtcgcccgac
     6061 aaacaccgca ggtttgggcg atttcgaaag gcttgtattt ttggcggtaa agttcgataa
     6121 tctcgtcctc tttctctttc gaaagtcctt gattgcccag tttgatgccc ttttccttgg
     6181 cttttctcag accgtccttg gtgcgactgc ggatattttc cagctccatc tctgccacgt
     6241 aaccaaggag cagacagagg agcttgcccg tgagcgactt ggtttcgatg ttttcacgga
     6301 gcgagataag ctcgatgtca tgggcttgga gctcttcgat gatggtaagg agcttgaaca
     6361 ttttgcgggt taggcggtcg agtttgtaga tgacgagctt ggtttctatg ccatctcggg
     6421 cagacttttt ggcgagtttg agagcttttt tgagtttcgt tcgctcatca tttccgcctg
     6481 aatctctctc aataaagagc ctatcgcagt ggctgagagc ctcaacttga acttccagcc
     6541 ccagctcttg gcggttgtca caggacgaga ctcgggcgta gccgatggtt aattgattga
     6601 tggtgtcagg tttcatgttt cctccatttc tattgtagca gggctaacta gttagaaaaa
     6661 gaagaaactt agaacaaccg tgtactctta aaatatccta atttatagct ttaccaagca
     6721 gaaaaatacc agctctttgc tctgtaattc ttccatacct cctacaacca actcggtatt
     6781 ctctttagaa gtatatcgtt gttgctttag aaaatccgta accttatttg tagtttctat
     6841 catttttttc atagaatcgg cagtatggtc ataacgagtt cttacagata gaaccagttt
     6901 attcatttcg aataatgtgc cactcatttc tttaggaaaa tattgctgga gtgaccgaca
     6961 aaaaatatca aaggaatcat aaaagcctgc aagtaataca atcgaatccg catctttaaa
     7021 gttgtctaaa ataaactgct gtatccgttc gttaataaca tcattttgca gaatcaaacc
     7081 attttggaca agcgggattt tatcaaccct ttctctaagc aaaaaacgca aggttgggat
     7141 tccgaaattt tgttgggtct tagcttgaga aagttggttc ggagagtaaa attccagata
     7201 gaatgctttg tttatttcag ggaaatcgaa cagattttcg aaatgttttc ggtgtggaaa
     7261 taaagataag acaatctcgt tatctaaaaa ccgaagaatc gtttgttgga taatgtgtgc
     7321 atttcgcttg gcttcatcgt ctacagttgg aatattaggg agattaacca gatagataag
     7381 cataatggcg atatattctt cgtcttcttt agcagaatga agctttttta atttctcttc
     7441 gccaaaaacc tgctttgctt ctttcgcatg ttcagaaaga gcatttttta tcttcgaagc
     7501 aacctgtctg aaatgaaagg tttcttcttt atttagatta gacagcactt tagatattcg
     7561 ctgactctga aagtctaagt cggttagggg caagacttca cgataatatt caggcacttc
     7621 ctcttcgcct gtaaaaatcc gattgctaga aaccctattt atttctggga taaaagaggt
     7681 tttgggattg ccttcgccta ctaatttatt taatactgta ttaacaaaat cttcttgatt
     7741 tcgttttttc ttttcacatt tttgaagaat ataacaaaac caacctaatc taaaccttgt
     7801 catctgctcc tccttgagat ttttgagatt ttttgactga tgaatgagat ttaataatca
     7861 attatacttt aaccataagt tagctaactt accaaaatta tatcaaagga gaacacttat
     7921 gtcactcaca ccttctattc gtcgaaacaa agaggttcaa gcacttcaaa ccatcgccag
     7981 cccatatcaa atggaggtcg caagaaagct cagccaaaac atggcagaca accaagcaag
     8041 ggagcttctg gcgacagaca ttctctacaa agtggggaat ctagccttga ttcaagctga
     8101 aatcctgaaa aacaatccag aagctcacgc ttatacagat tatattctga gagctttcac
     8161 tcactatact acgcaatatt tgaaataagg aggagctatg aacatttatt cttggattct
     8221 gataataagc ggcgttgtct tactttttat ctctgttctg ggggcatact ttgaagcgtt
     8281 agacaaagaa aaccagccaa gctatacaga agaagaaatc gcactggcag aatatcttga
     8341 aaagaaacaa gcaattaacg gaatttactt agaagctgtc gccgaaatct tacgccacca
     8401 aaagcgatag aatcaccact tggactagac aaaaggacaa aatatggtga aatatactac
     8461 tgttagcccg tccaaaatct attccaatcg ctccaaaagc aggacaatac caaatttcaa
     8521 tttttggcaa tcttcctgta taactgaaat cagaaaggaa accagtcatg aagaaactac
     8581 tcgcttatat tctcggattc tttgcctgtg cttggcttgt caatcaagcg gttaaattgg
     8641 ttttggaagt ctggcaagtg ttgttttggg gagcggtgtt catctttgct ggctggtttg
     8701 cctttcggat tatcaaaatt aagaaagatt ggaggtaaat atgaagcgac actttaacgc
     8761 cttgtcgtgg agtgaatgga cttggcaacg tccgttttca gaagaagatg tcaaaagtct
     8821 gcttggtcag ttggtcggtc tgactcggcg gaagagtatt gtttttgaag ttcgcttgaa
     8881 gaaaaaccat gtgcggtatc ttttaggaac agaagagcaa gataaacggc acgttcatca
     8941 attgatacaa tcacaccgac agattcaatt ttctaaagct cctaagcgtg aaaaaatatc
     9001 ggttgcccga ttagttcaga ttaagcagtc acattattct ctaaaaacag attcgttaga
     9061 aaacatgatt cgctctagtt tggcactgtc aaaaacaatt caaccagatg aggaaattgt
     9121 tcttcagcta attcttggct ctggctctcc accaaagcca caacctaaag aattaccaaa
     9181 tttgtctgct cgctggtatc aggttatcac aaataatatt cctgaactct cggaaaactc
     9241 caaaaagctc atgcgtcaga agttaaatca atcaactttc agatgtgaaa ttaggcttgg
     9301 ggcaaattca cgcagtattt tgcgaacgaa agagttcttt tcaaacctgc tcagtagctt
     9361 tcggatgctg gaaactcacg ccactatcga actaaaacca atctcggctt caaaaattaa
     9421 tcaagcccaa ccgtcttggt ctttcccgta tagcttagct actactgacc tcgcttgttt
     9481 tctgcttttg ccagttggtg aagaaaacat ggacggcgtg ccgaatgttc acccgaaact
     9541 catcacgcca ccgcttggct acaatttgaa tcacaacaag gcgagaagtt ttggggaaac
     9601 aatcgaaact cagccgagac cgcttcaaat ttccagccaa tccgccaaga aacatttgtt
     9661 tctacttgga agcactggaa caggtaaaac tacagccatg agtcatttga ttctatctga
     9721 cataaaatcc aaaaagcata gtgtggtcgt gattgacgcc aaggggcaat taacacatga
     9781 actgcttgaa cgaactccag ccgaacatga cgaagacata gtggttattt caccaaccgc
     9841 caagcgaatt gttggcatta acccctttga gctgacaaac tatggaatcg agcctgaagt
     9901 tatcgcagat tatctgttag agttattcaa aggcttatat ccagaacatt tcggaatcta
     9961 ctctttagat attctgtcgc acgctttctt aactttggca cggattccaa acagttcttt
    10021 ggtgatgttg cctagccttt taaccaataa gcatttcaga aataagctgt tgaaaaatct
    10081 cacagaccca atcggcttag aaagtttttg gtcttggttt gaactgttaa gcgaagccca
    10141 acgccaccag atgttaaacc cgattttgaa caagtttcgc cagtttttac ttcgcccgca
    10201 actcagggct atgcttggac aagctcaacc aaaattcagt ttggcagaac tcttccaggg
    10261 cagaaaaatt gtgctagtgc cattaaacaa ggcggtgatt ggttcagaat ccgccaaact
    10321 tattggaagc cttgtcactt caatcttgtg gatgcttatt ttgcgacagt cttcggttga
    10381 gccaagcaaa cgccagtccg ctttcattta tgtcgatgaa acaccgagct ttcttggaat
    10441 ccctaacgcc aatctggacg aagcactttc acaatctcgt cagtttaatg ttggctgggc
    10501 gataggcttt cagcacttgg cacaaatgtc ttcaaacctc aaagcaggaa ttgaatcaaa
    10561 taccgccaat aaaattgtct ttggcttgaa tttgaatgaa gctaaggaaa tggcaaactc
    10621 cacattagaa gttaccaaag aggattttta cagcctgcca ccattttggg tatattcaag
    10681 aattgaaacc tcgcccaata cctatcgctg ggtaattggc aaaacctatc cgccgacacc
    10741 taggattcgg gatagtcgca cgccttacct aaatagtctt atcaaatacg gacaaaatgt
    10801 ggacgattta gagcgagaat ttcaggtttt tacttaccaa gagaaactac aaacggctga
    10861 atcattggac gatttaggac gaaaaaagcg ttccaatcgg tcttctaatc gtgttgatga
    10921 agaagattct tccagccctg taaaataagc ctttctgtcc tcaattgtca cacgacttac
    10981 tgcgtaacaa agcacatttt accagccaac ctttaaggag aacaaaacag atgaaatgga
    11041 atcaattaac cactcaggat attcaaattt tatactttct caatcaagct agatatgcca
    11101 ccaccaacca gcttgccaga ctcttttatt cagacagcga caaaccagaa accgctattc
    11161 gccgagccaa ctttacaacg caaagactgt taaaggctgg tctggtttca cacctcaaac
    11221 gccgaattgg tggcgttcgc aaaggctctg cttcctatgt ttggcaaatt acctttcaag
    11281 gtttgaaact gttaaaaagc caagatgaaa cgattgtctt gcgttataaa aaccactacg
    11341 aacccagcca acaccatgtc gaacacacct tggcggtcac ggaaatattc gttgaaacta
    11401 tggagaccgt ccgagattct aaaaagctat cgcttgaagc cttttctttc gagccgaact
    11461 cttggcggag ctaccaaaaa ctttctggct taggtatgac tttgaagcca gatgcttatt
    11521 tggagctggt cagccaagaa tacgaagacc actattttat tgaactagac cgaagcactg
    11581 aaagcctagc ccgcatagtg aacacttgta aaaagtatat cgaatactat cgctcaggcg
    11641 tcgaacaacg ccagcacgga gttttcccat tcgttctttg gattgttcca gacgacaaac
    11701 gaaagctagc catttccaaa actatccaga aagaacttta taacttttgg gaattgttca
    11761 ccgtgattac tctggatgac taccaaaact atatcaaagg agggattgat gaacttgaaa
    11821 aatcaagata aagactccat aaccagctcg cacaccaagc acgaaaagaa gcaaatcggt
    11881 cgaacgactt actttatctg ccactatttt actggaaatc gtccgcttga aaatgtctta
    11941 gaaaggctga ttttaagcga taaatcacta ctttaacagt agtgaaaatg gtataataga
    12001 agtataaggt gtgtgaactc caaaaggaga aaacacatga acagaacttt gacaatttca
    12061 gattatagac aagtagatac ttccagactg tcggatatta cggttgttta ctgccgtttg
    12121 agccaagacg acggattgga cggagacagt aactccatta tcaatcagaa gaatattctt
    12181 cttgaagtgg tagccagaga aaaactgcca aatccagttc ttttcgttga tgatggcttc
    12241 agcggaacga attttgaccg accagctatt tcagaagcgt tacggcttgt agaaaatggg
    12301 caagtttcaa acttcatcgt taaggatttg agccgtttgg ggcggtctta tatcaaggtt
    12361 gggcaactaa cagaaattac ttttccaagt tttgatgtcc gctttatcgc ccttaatgac
    12421 ggtatagatt caaacaagcc aaatgaaact aactccattt ttctgccaat caagagccta
    12481 atggatgaaa tgtatgcggc agacaccagt aagaagattc gggctgtctt tcaagccaag
    12541 gcaaaatcgg gtgtgcccgt cacgaccaac ccaccttatg gttatcttaa agacccaagc
    12601 aaccctaaaa actggataat agaccctgtt gccagcgaag ttataaaacg gatttttcaa
    12661 gaagctaaaa gcggaaaaag tctttcagag attgcgaaag gcttagaaag cgacaaagtt
    12721 ttcaagccag accgccaccg aattgaaatt ggcttgaagt ctatttcttc cagccctaat
    12781 gtggaggctc tgccgtattt ttggactcgg gaaacactga gtgctatttt agggcgtgaa
    12841 gaatatcttg gtcataccgt taatcttcgg acacggacaa aatcttataa ggacaaaagg
    12901 tctattgacc tcccaagaga agattggctg attttcaaaa atactcatga agcaattata
    12961 gaccaagaaa ctttcgatat tgtccagaaa atgcgaagcc acaagcgttc gaatcagcgg
    13021 tataaaaatc gacttgggca tgaaaatttg tttgcggggc tggtcttttg tggaacttgt
    13081 ggtcggaaac attacttctg tccattcgag agcaagactg gactcaatca cgaccactac
    13141 aaatgttctg gctaccgcag accaattgac gggtgcgaga atccacacta cattcagaaa
    13201 tctgccatga ttgagattgt gagcgacaaa ctccgccagg tcatttccga agcccagctt
    13261 gaccgagaaa actttttgaa gaagttagag caacaaagta aggcacaatt cagcaaggac
    13321 aacaaacgcc agcgtcagca actccaaaag gacgaatacc gctccaaaga aatcgaccgc
    13381 attattcaac agctttacga agacaatcta cttggcaaaa tttcagatga acgctttatg
    13441 aagttaagcc agacttatga ggaagaacaa aagcaacttc aaacttccat ttctgactta
    13501 acagaaaaac tcgccaaaca acaagaagat agcttgaata tctccaagtt tatgacgaga
    13561 atttccaaat atacagaagt ttcagaatta accgttgaaa tggtaaatga actgattgac
    13621 aagattgtga ttcacaagcc aactggcacg aaacgcaacc gaatcatcca gatagacatt
    13681 tattacaatt tcatcggaaa actaaacatt gaaaaagcga gtcaggcgga ctgactcgct
    13741 actattaacc cctaataact aaactgctag gtgtcagctc gactaatcgg gcttttgact
    13801 tgtataaatt cggataaaat cctataataa aggcggtaga cggatttgaa aaccttgatt
    13861 tatcaaggtt tttgggtgtt tcgccccaaa ttcgccccaa attatgcgac taaaaaaata
    13921 tttttgattt tctcaaaatt tctctcagcc agtgcttcca tttggtgtgt ataaactttc
    13981 agagtaatat ctggactttc gtgaccaaga agcttggata tggtaacaat atcaacccca
    14041 ttaaatatca agtatgatgc gtatgtgtgc cttagactat ggtttctgac aggtctacca
    14101 acaatccttt taattatctt attacatgca gaattagata ccccaaaaca tattctattt
    14161 ttgatgttgg cctgccaatg atttttccta tactctcgaa gaatctctat tgtctttgaa
    14221 tcaatcggaa cttttctttc tgacggatca ttcttcaatg cacagaaatc tttagtgttt
    14281 gagtaatcaa acgctttatt gatatccaat atgccatttt caaagtcaac atcattccag
    14341 gttagaccca ttgcctcaga aaaacgcaat cctgtgactg caagaaggta aagagtgaaa
    14401 taggttacat acctaacttt ctctcttgtg agggctagga gagccttgag ctcatgttct
    14461 tccaaaaagt cattttcttc atctctaatt tcaatttgag atttcacctt tgcatcatca
    14521 gcaaagttaa aacgaatgac ttcttctcta acagctactt tcatagctcc ctttatttgg
    14581 tagtggaatt tttcaatagt ttcttgagcg tatttctctc caaactcatt taactttttc
    14641 tgatagtaaa gcggtgtaat atctttgacc ttcatctctt ggaagtaatt cttaacgtgt
    14701 ctgaaattct ttgtataggt ttcccaagtc ttatctttga catatggacg cttatagact
    14761 tctgaccaag tcttgacaaa gtcatataga gtcacttctc cgtcagtcag aatgttttgg
    14821 gtcaatttct tttcgacatc taatgctgcc gtttgagcaa gcttcttggt cttaaaacca
    14881 cctttttctt tccgcttata ttttccatct atggttttgt aggaaatacg gtattcccac
    14941 agcccgttct ctctttttcg atatgatgcc atttgttttt tacctcattt tctgataaaa
    15001 tgagtacaag aaaagacttg ccagattggc aatttttctt atacgaactt gccttacgct
    15061 ctccttgacc aaaatttgag cgtagggctt ttttattttt taattagttt atatagtttg
    15121 taacaactcc aagctgtcaa tgggatagca aggaaaggtg caataggaat cccaacaaat
    15181 ccaaaaaaga ttagaaaaat ataaagtgcg taaaatatga ctttatttgg tctaagattt
    15241 ttcttaggcg atgtttttga gacattgttc ttattttcta tatcaataaa actatcactg
    15301 gaaatgtttg gaacaatatg ttcagcccca gttattttag ttttaatggg ctgaactac
//
LOCUS       DASGAC010000038        14586 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.038, whole genome shotgun sequence.
ACCESSION   DASGAC010000038 DASGAC010000000
VERSION     DASGAC010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 14586)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14586)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14586
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.038"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(1..450)
                     /locus_tag="U1335_000903"
     CDS             complement(1..450)
                     /locus_tag="U1335_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1694 domain-containing protein"
                     /protein_id="HEM5231397.1"
                     /translation="MNDLNTTILQKASGETRLNPDEQRLYMGTYRERVVLLVSFDDLS
                     SEVVGNKFDTICQKLANSYSPLFLKLSPALSDKQQISLMKLAQAHGITTSIIDEKVSK
                     SPYALVFHTDHAVDLEEINLEVIFPNLIKKEEKKEEQKPSFWKKLFG"
     gene            600..1907
                     /gene="eno"
                     /locus_tag="U1335_000904"
     CDS             600..1907
                     /gene="eno"
                     /locus_tag="U1335_000904"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002985288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEM5231398.1"
                     /translation="MSIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTG
                     EHEAVELRDGDKSRYLGLGTQKAVDNVNNVIADAIIGFDVRDQQAIDRAMIALDGTPN
                     KGKLGANAILGVSIAVARAAADYLEVPLYTYLGGFNTKVLPTPMMNIINGGSHSDAPI
                     AFQEFMILPVGAPSFKEGLRWGAEVFHALKKILKARGLVTAVGDEGGFAPKFEGTEDG
                     VETIIEAIEAAGYEAGENGIMIGFDCASSEFYDKERKVYDYTKFEGEGAAVRTSAEQI
                     DYLEELVNKYPIITIEDGMDENDWDGWKALTERLGKRVQLVGDDFFVTNTDYLARGIK
                     EGAANSILIKVNQIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDSTIADIAVATNAG
                     QIKTGSLSRTDRIAKYNQLLRIEDQLGEVAVYKGLNSFYNLKK"
     gene            complement(2062..3225)
                     /locus_tag="U1335_000905"
     CDS             complement(2062..3225)
                     /locus_tag="U1335_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012767674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5231399.1"
                     /translation="MNITEYKKKNGTIVYRSSVYLGVDRLTGKKARTTVTASTKKGVK
                     IKARQAQLEFEKNGHCVKEKPTITTYRELVALWWESYKNTIKPNSQQSMEGIVRLHIL
                     PVFGDYKLDRLSTPIIQQQVNKWANDANGGVSGAFANYNLLNNINRRILQYGVTMQLL
                     QHNPARDVIVPRKQQNKEQKVKFFSNQELKQFLDYLDSLDQSNYGVFFDYVLYKILLA
                     TGCRIGEALALEWSDIDLEAGTISITKTLNRYQETNTPKSKSGLRDIEIDKATVLLLK
                     QYKKRQQAHAWTLGRSVSIVFTPFTTKYAYACLLRKRLQKHFKAAGVPDISFHGFRHT
                     HATIMLYAGLEVKDLQYRLGHSNISMTLNTYVHATKENAKKAVSIFEAAISNL"
     gene            3469..3567
                     /locus_tag="U1335_000906"
     CDS             3469..3567
                     /locus_tag="U1335_000906"
                     /inference="COORDINATES: protein motif:HMM:NF033608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Fst family toxin"
                     /protein_id="HEM5231400.1"
                     /translation="MSNETIIITFLLPLLVGILTALFEYWLNNRNK"
     gene            complement(4327..4509)
                     /locus_tag="U1335_000907"
                     /pseudo
     CDS             complement(4327..4509)
                     /locus_tag="U1335_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001080841.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            4729..4929
                     /locus_tag="U1335_000908"
     CDS             4729..4929
                     /locus_tag="U1335_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000359663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM5231401.1"
                     /translation="MSKLKGYRVMLGLTQKNMADKLDISLQSYNNKETGKTSFTDRER
                     LIIREQVREIKPDITIDELFYS"
     gene            4943..5761
                     /locus_tag="U1335_000909"
     CDS             4943..5761
                     /locus_tag="U1335_000909"
                     /inference="COORDINATES: protein motif:HMM:NF021206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HEM5231402.1"
                     /translation="MELGIILKNDELVVDSLTVAEVFEKEHRKILRDIRKIEEYFDTV
                     NFSQDNFDSVEFSQGKIAPAEFNQSNFGPVDFNQGKIAPVDFEDYFYLETYRDRKGQE
                     RPVYYMNQKGFTLLVMGYTGQRAFSYKVAYIEQFEEMKRSLQGQNREEMTQAQLLAYI
                     KHYLAGSRVIIQPKDEEMYLDYYCVGIYSLLRYYGFKKSIPCSYIRELRPKVMEIGLA
                     GFEEIVNYCAVKNKLKLAYVKATAQDFQASEVDQAQPPLFSILGLLDYREEVAT"
     gene            5849..6022
                     /locus_tag="U1335_000910"
     CDS             5849..6022
                     /locus_tag="U1335_000910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231403.1"
                     /translation="MAKQAYLFPHPTIEELCESLNELLEDNPEWILTNVDIVKHEDGT
                     YTGILDYLEPLER"
     gene            6257..6433
                     /locus_tag="U1335_000911"
     CDS             6257..6433
                     /locus_tag="U1335_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017645779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HEM5231404.1"
                     /translation="MTATPKRGRPTDSKKDYMLRVRLDNGTRAKLEEIEMKTSQSKSE
                     IIRNGIVEQFDRLK"
     gene            6635..7663
                     /locus_tag="U1335_000912"
     CDS             6635..7663
                     /locus_tag="U1335_000912"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013540.1,HMM:NF021206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HEM5231405.1"
                     /translation="MTSTRATKQALIKQLTRYKDSTGCTYQDIADEIGSTHGAVYNWL
                     TGGYLPTESNVDSIKIFLASKNMLTPTARMSDKTALKLVTDLLNYKKQHNLSNDDLAQ
                     QLNMHPNNISEWQKGTAKPTALNAYRIMKLLDGQTEQPTLFTMDKAFSDIFQTSDNHG
                     NLLNLIEVDGVPYTTSRMIAEKFNKQHGHVMRDMDEIKEGLSKSGETPEKPYFIESSY
                     IHEQNKQEYREILINKKGCILYLFNIQGYQEEKMLFIESFEKMEQALNETPTQQPTPE
                     PTLTPQIDESPELAYIRSKLTEIMAESDLQAIYKDLNQLQTFVTMVKPWQATPKEELP
                     PSNLGVRK"
     gene            7720..8163
                     /locus_tag="U1335_000913"
     CDS             7720..8163
                     /locus_tag="U1335_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231406.1"
                     /translation="MEQYFEQFEERLQVAEEKLDILSDWHIAKGHKGATEIAEECRRA
                     ITTLWMEFYRFSEAYKEAEAGHEEFYQANVDYLLGELRKHDNILLENALSIGKGYPNY
                     LLFDYLDKEQQIFENPDNLATAPTGNIWHYIRSLIIKDQKERGIL"
     gene            8165..8368
                     /locus_tag="U1335_000914"
     CDS             8165..8368
                     /locus_tag="U1335_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231407.1"
                     /translation="MQEMTIETALTLLAIFTPLNLYLWFGVGLGTYQLHSKPKNVSEG
                     NHTRTLENERYGAYIQLAGKRYN"
     gene            8380..8715
                     /locus_tag="U1335_000915"
     CDS             8380..8715
                     /locus_tag="U1335_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231408.1"
                     /translation="MTKNQLPPHLNKVFKLLPLGMDLPITGTDIEKLTGLDVRTIREH
                     IRQLIVDYGIPVCGGRDNKQGGYYIPQNETERLAGVLPLQRQYDQEHKRIHALLTADL
                     TDWRKYRDG"
     gene            8708..8977
                     /locus_tag="U1335_000916"
     CDS             8708..8977
                     /locus_tag="U1335_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEM5231409.1"
                     /translation="MVNILSREAELELLEKVDRHLDKRLELEKQQLERFDLIPADEVA
                     DKLNVSGTTLRNWEHMGLQRYQSPFENSKKIFYRASDIYNFLAVE"
     gene            9079..9969
                     /locus_tag="U1335_000917"
     CDS             9079..9969
                     /locus_tag="U1335_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001140518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conserved phage C-terminal domain-containing
                     protein"
                     /protein_id="HEM5231410.1"
                     /translation="MAKTKIYFWLKIDKKFFDNIFIKRLKTIPGGYTMTVIYIRLMLE
                     SLESDCILYYEGYFENLKEELALKLDVSEDDIDMTMAYFTKCGLIQIDEDQNAELPQA
                     KAMVMSETNWASYKREQRQNKERLDNVQKSLTNSNSCPTEIEIEEDINKDINKDINKD
                     INKGIYSELNNSAEQSSAYVFPDWLNQSSIDELKKVNPKNYPLYIPIQYLNQETGHAY
                     KFIATHTKFIQARYKDGYTLEDFKKVIDTKVAQWKNNTEMAKYLRPKTLFSPSNFDSY
                     LNEVPKHIQTEQDNIEPLPF"
     gene            9982..10818
                     /locus_tag="U1335_000918"
     CDS             9982..10818
                     /locus_tag="U1335_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEM5231411.1"
                     /translation="MENHLDKITVLDELCEKHGTPLWQFPYTSQGQEHISKMCQVCTQ
                     EGIALTEQETLEEARNRQRYVTTYDVLMRDSIVPKELRGASFENFKAETPEEKQLLEF
                     ARGQVEKYKQGMTGNTLITGQTGIGKSHLSFAMAKAINEHFKEIGKPKSVLFVSLTEI
                     IKQIKNGWNYGKGANLTEFDAVEQLTNVDFLILDDLGAKNATIAPKSDWEQDFLFDIL
                     NNRETTIINTNLNSQEIKTVYNARNASRIFKGLEGNSFKASSISDKRYTINEFKQGEQ
                     TK"
     gene            10815..11273
                     /locus_tag="U1335_000919"
     CDS             10815..11273
                     /locus_tag="U1335_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018368034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231412.1"
                     /translation="MTEQEFFEQADKELEELNQRRANYMADDTPVEVADIPKLLKIGA
                     MLRNEDTSLNAYELYKHPEARAKLFAQITEACYMVIGQTPSQSEKLNFGQYLEGQFQA
                     IVKKMIGQTNTQALGELVAALDLDDKLASQFIRDIAVSGLLSKDNQKQTN"
     gene            11288..11452
                     /locus_tag="U1335_000920"
     CDS             11288..11452
                     /locus_tag="U1335_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004242020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231413.1"
                     /translation="MEEEVELLNTVRKGFILYNKHDIIVKEKTPDFGEITLYFQDGKF
                     THLVKKETKK"
     gene            11541..11777
                     /locus_tag="U1335_000921"
     CDS             11541..11777
                     /locus_tag="U1335_000921"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231414.1"
                     /translation="MSKQQIMKRLKAIELALTNKEYNREEIIAEWLAVIRQMICYPDI
                     QKQLEELPYDIKFRTFAENEEFRKQIKTILKEEN"
     gene            11782..12774
                     /locus_tag="U1335_000922"
     CDS             11782..12774
                     /locus_tag="U1335_000922"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231415.1"
                     /translation="MTLTLYFAKTKEYKNIIQKYIDALTEWRRMVELDIRPERITEFR
                     KNAKKEILDVYNAYRDKKIDEARQQMETIEKRYKNTRSVYSDPQAEILRRQDFDLEFS
                     AMEYNDIVELLSDEKRDFTDYELKKINAHYRRDLKIQTLLDSQKLKRKEQYKNDPEYQ
                     KYFEEFQTLQAFRGIGLGMIYLPSDEDPKGYITENLELILDSEQYAHSLSNQIQKVSQ
                     LLGNIPTMKGSNPTVFTKALPAKKMEFEEFDERIFEESPNYDITIRFKYLKERLDDTT
                     TDRWDFTRDDYDAYQHYQYLEGRHEQKMKNDFKYKQRYISAKNAIIERKNEEVK"
     gene            12771..13139
                     /locus_tag="U1335_000923"
     CDS             12771..13139
                     /locus_tag="U1335_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001814790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HEM5231416.1"
                     /translation="MSSLTAKQEKFMLALMTAPTVTEASKLAGIARSTGQKYLKDITF
                     KRAYRQYRTDIMQQATGKLQNASIRAVEVLEEIMNDETVSPYARQQAAQTVLNMAMKS
                     HEVDNVLEIVEELELRIAEE"
     gene            13312..13563
                     /locus_tag="U1335_000924"
     CDS             13312..13563
                     /locus_tag="U1335_000924"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231417.1"
                     /translation="MNRKRVLRRLKTIEARINTPVIHTAKPTFCDDYSIKSWQVSAPD
                     FDKTFPEDDFYKWSKGKIVGINFEDVSTEVLRGFIHSGN"
     gene            13707..14114
                     /locus_tag="U1335_000925"
     CDS             13707..14114
                     /locus_tag="U1335_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArpU family transcriptional regulator"
                     /protein_id="HEM5231418.1"
                     /translation="MIDEKKTIAITKRYLKQYPRLKTIARTTTTLQSSWNVSDKVKSG
                     TTRNTQEDRLLNAIAVSQEVEEIERAISNLDKLHSDILTEKYIKRQKTGLTLYESFYM
                     GKSAFYETLQTALLDFACIFKNGELLQYLDSEP"
BASE COUNT         4850 a         2730 c         3075 g         3931 t
ORIGIN      
        1 ctaaccaaat aattttttcc agaaggaggg tttttgctct tccttttttt cttccttctt
       61 gataagattt ggaaagataa cttctaagtt aatttcttct aaatcaactg catgatctgt
      121 atggaagacc agagcgtagg gagatttact aactttctca tcgatgatgg aagtagtaat
      181 tccatgggct tgagcaagtt tcatcaagga aatttgttgc ttgtcagaca gggctggcga
      241 gagtttgagg aatagaggag agtagctgtt tgctagtttt tggcaaattg tatcgaactt
      301 atttccgacg acttcactac tcaaatcgtc aaaggaaacg agcaggacaa cccgttcgcg
      361 ataggttccc atgtatagac gttgttcatc tggattcaat cgtgtttcgc cagaggcttt
      421 ctgtagtatg gtagtattta aatcgttcat ggtttcagta taacatactc agttaacttt
      481 gaaaaggaag gcgtttacat tatttctttc agtaaaataa cctgtttttt cttgaaaaat
      541 cccttctttt agggtatgat agctatgtaa ctattttaaa ctcaaaggag agtaatataa
      601 tgtcaattat tactgatgtt tacgctcgcg aagtccttga ctcacgcggt aaccctacac
      661 ttgaagttga agtttatact gaatcaggtg ctttcggacg tggtatggtt ccttcaggag
      721 cttctactgg tgagcacgaa gcagttgagc ttcgcgacgg tgacaaatct cgttaccttg
      781 gtcttggtac tcaaaaagct gttgacaacg tgaacaacgt gattgctgac gctatcatcg
      841 gttttgacgt tcgtgatcaa caagctatcg accgcgctat gatcgctctt gacggtactc
      901 ctaacaaagg taaattgggt gcaaacgcaa tcctcggtgt ttctatcgct gttgcgcgtg
      961 ctgctgctga ttaccttgaa gtgccacttt acacttacct tggtggattc aacactaaag
     1021 tattgccaac tccaatgatg aacatcatca acggtggttc tcactcagac gctccaatcg
     1081 ctttccaaga attcatgatc ttgccagttg gcgctccttc attcaaagaa ggtcttcgtt
     1141 ggggtgctga agtattccac gctttgaaga aaatcttgaa agctcgtggt ttggtaacag
     1201 ctgttggtga cgaaggtggt ttcgcaccta agttcgaagg aactgaagac ggtgttgaaa
     1261 caatcatcga agctatcgaa gctgctggtt acgaagctgg cgaaaacggc atcatgatcg
     1321 gtttcgactg tgcgtcatct gaattctacg acaaagagcg taaagtatac gactacacta
     1381 aattcgaagg tgaaggtgct gctgttcgta catctgcaga gcaaatcgac taccttgaag
     1441 aattggttaa caaataccca attatcacta tcgaagatgg tatggatgaa aacgactggg
     1501 atggctggaa agctcttact gagcgtcttg gcaaacgcgt tcaattggtt ggtgacgact
     1561 tcttcgtaac aaacactgac taccttgcac gtggtatcaa agaaggtgct gctaactcaa
     1621 tccttatcaa agttaaccaa atcggtactc ttactgaaac atttgaagct atcgaaatgg
     1681 ctaaagaagc tggctacact gccgttgtat cacaccgttc aggtgaaact gaagattcaa
     1741 caatcgctga catcgcagtt gcaactaatg ctggccaaat caagacaggt tcattgtcac
     1801 gtacagaccg tatcgctaaa tacaaccaat tgcttcgtat cgaagatcaa cttggtgaag
     1861 ttgcagtcta caaaggcttg aactcattct acaacttgaa aaaataaaat catttgattt
     1921 tgataggctg taaagccttg atataaagcg ctttgggtta ccctcccaag gtgctttttt
     1981 gattttacta ccctttttac tacccctatc ttatttttgg tatagtaaga gggtagtcac
     2041 taatagtgac acccttattt tttataaatt gctgatagct gcctcaaaga ttgagacggc
     2101 tttttttgcg ttctctttgg tggcgtgaac gtatgtattt aaggtcatgg atatattgga
     2161 atggcctagc ctatattgta agtctttcac ttccaagcca gcgtagagca taatagtggc
     2221 gtgagtatgg cggaagccgt ggaaactaat atcagggacg ccagcagcct taaaatgctt
     2281 ttgtagtctt ttcctgagta ggcaagcgta agcgtatttg gtagtaaatg gagtgaatac
     2341 aatactcaca gaccgcccca gcgtccaagc gtgggcctgt tgacgctttt tatattgctt
     2401 gagcaacaac acagtagcct tgtctatttc aatatcccgc agccctgatt tagatttagg
     2461 cgtgttcgtt tcttggtatc gattgagtgt ctttgttatg ctgattgtac cagcttctaa
     2521 gtcaatatca gaccactcca gagccagagc ctcaccgata cggcaaccag tggccagtaa
     2581 aatcttgtaa agaacgtagt caaagaaaac gccataattt gactgatcca agctatccag
     2641 gtaatcaaga aactgtttca attcctgatt gctgaagaac ttgacttttt gctctttatt
     2701 ctgctgttta cgtggcacaa taacatcacg ggcggggtta tgttgcagca gttgcatcgt
     2761 cacaccatac tgaagaatgc gacggttgat attattcaat aaattgtaat tagcaaacgc
     2821 cccactaaca ccaccatttg catcattggc ccatttattg acttgttgct ggatgatagg
     2881 agtagaaagc ctatctagct tgtaatctcc aaacacgggc aaaatatgaa gtctaacaat
     2941 accttccata gattgctggg agtttggctt gatggtattc ttgtaacttt cccaccacaa
     3001 agcgacaagc tcccgatatg tagtgatggt tggcttctct ttgacacaat gaccgttttt
     3061 ctcaaattcc aactgagctt gtctagcttt gatttttaca ccctttttag tgctagccgt
     3121 gactgtagtt ctagcctttt ttcctgttag tctatcaact cctaaataaa cgcttgagcg
     3181 gtacacgata gtaccgtttt tctttttgta ttctgtaata ttcatgatca tacctttcta
     3241 acatcagtaa gcaagtatgg gatttagtta agtatttatg aatattagta tttatcatgc
     3301 gtaggcttac gagaatagcc ttattttcgt ttattttggt ttggtagggt aaatgtacta
     3361 gtcataagct aaaagcgaat acaggcgatt ttggagcgtt tgacaacgtg agcggtattc
     3421 tgatatgata gacaagcccc cggattttat tgaagggagg tgacttactt gtcaaatgaa
     3481 accatcatca tcacgtttct tttgcctttg ttggttggta ttctaacagc attgtttgaa
     3541 tattggctaa acaaccgcaa caagtaaagc ctttcggggc aaaacaaaaa ccctcaacgc
     3601 tggaaccgtt gggggctttt tttgtttgga cttacttgtc aaagtgaaat ccattcatca
     3661 tcgtacccca agtatagcac ccctttattc agttgtcaaa tgatacagca tagtatttca
     3721 cacagtccac tagaaagcct acaagatgat taaagtagct catgaacttc caaatagtgc
     3781 aacgttgcac catttaggtg taaaagccct ttacttaatc gccactcttc caaattctga
     3841 cacatggcag aatttaagca gtagagccct ctacctcttt gctgaaagtt tttcaaaatg
     3901 tgacaacgtt gtcgcattta ggaacacccc taggcgcatg gaatagctta gtagggtaaa
     3961 tgtacccgag aagtgtttga acgtggcgag ggagcttgta gggagcgtgg gcggttagtc
     4021 tttatattta tttaactttc tttttagatt ttgcaattct atgtatttaa tttgtgcagt
     4081 catcattttt ttcattgagt catcgaggtc ctccaaatga tcttctaagg ttttaatcac
     4141 ctctatcaga gtattagaat caacttgcgt aacctcagct acttctttca attttttcag
     4201 aagttctaaa atattttcaa aaagttcatc ataactagaa gatgccgcca ttgataagtt
     4261 ttttgataga gccatacctt tcgcgagttc tgcatcaact tcttcaagtt gatccaataa
     4321 gtcttcatac cccaacagat acccaacact caccccaaag tggtcagcga gtgcctgggc
     4381 tttgtctggt ttgatttgac tttctccgtt ttcccaacgc tgataagttc taagtggtac
     4441 ttgtaattca agagctattt ctttctgaga tagctttttt tcttgcctta attctttcaa
     4501 tctattcata atttcacgac ctttcacgct tgattatagc taataaaata aaaaaagtca
     4561 aaaaatgacg taaaaatttc aaaaaaacta ttgacaacgt cataaaacga cgttataatc
     4621 ataatcaaga tttggttgcg tcaaaaaacg acgtgcatat tcttacccct ccacgacctt
     4681 tcacactttc aatctatgga gagggatttt taaagaaagg agaacgacat gagcaaactc
     4741 aaaggctacc gagtcatgtt agggctgacc cagaagaata tggcggacaa gctggatatt
     4801 tctttgcagt catacaacaa caaagaaacg ggcaagacct catttactga tcgtgaacgc
     4861 ttaatcattc gtgagcaggt cagagaaatc aaaccagaca tcaccattga tgaactattt
     4921 tacagctaga aaggagcaag caatggaatt aggtattatt ttaaaaaatg atgagttagt
     4981 tgtggacagt ttaactgttg cagaggtatt tgagaaagaa cacagaaaaa ttctacggga
     5041 tattcgaaaa attgaagagt attttgacac ggtcaatttt agtcaagaca attttgactc
     5101 cgttgaattt agccagggca aaattgcccc cgccgaattt aaccagtcca attttggtcc
     5161 cgttgatttt aaccagggca aaattgcccc cgttgatttt gaagactatt tctatctgga
     5221 aacctaccga gatagaaaag ggcaagaacg cccagtttat tacatgaacc aaaagggctt
     5281 cactttattg gtgatgggct acacgggtca gcgtgctttt tcttacaagg tggcttatat
     5341 tgagcaattc gaggagatga agcgaagtct gcaagggcag aaccgcgagg agatgactca
     5401 ggcacaatta ctagcctaca tcaagcacta tttggcaggc agtcgggtga tcattcagcc
     5461 caaagacgaa gaaatgtact tagattatta ttgtgtcggc atttacagcc tactacgcta
     5521 ctacggtttc aaaaagtcca ttccttgcag ttatatccgt gagttacgtc caaaggtgat
     5581 ggagattggt ttggcagggt ttgaggaaat tgtgaactat tgtgctgtta agaataagct
     5641 gaaacttgca tacgtcaagg cgacggcaca ggatttccaa gcgtcagagg ttgaccaggc
     5701 acagccccca ctcttcagca ttcttggctt gctagactat agggaagagg tggcgacata
     5761 ggcggactgt tatttttgat actaaaaaag accgctgaga agatagcgga cttactagag
     5821 gcattatttg agtataggag ttagcagaat ggcaaaacaa gcgtatcttt tcccacatcc
     5881 aactattgag gaattatgcg agagtttgaa cgagttacta gaggacaatc ctgagtggat
     5941 tttgaccaac gtggacatcg tgaaacatga agacggcact tacacgggta ttctggacta
     6001 tttagagccg ttggagaggt gacgagataa caaaaaagcc atagcggacg accaaatcag
     6061 caaggctttt cactcaaaca actaaaacca caaaaagcaa gtatgggatt tagttaggta
     6121 tttatttaat tatatcatac gttcattgaa aattgaatag ggtacgcaga tttttgaaaa
     6181 aagtttggtt taggggttga tttatgtggc gacataattt ataatgtttt ttgtagcgac
     6241 agaaaggagc gcaaaaatga cagctacccc aaaacgtggg cgacctactg acagcaaaaa
     6301 ggattatatg ctgagagtta gacttgataa tggaacaaga gctaaacttg aagagattga
     6361 gatgaaaacg tcacaatcaa aatcagaaat aatcagaaac ggcatagttg aacagtttga
     6421 ccgcctcaaa taaagaaaag ccctcaacgt ggtatagttt ggcgaccgta cacgttaaga
     6481 gctacccgac ctgaaaacag gtacgtaaat actataacat gcgtaccctt ttcagtcaac
     6541 cacacgacaa gggtatttgt cttttttggc gtacctttgt cactgacaag ggtacttttt
     6601 tgtacccaaa aattaagaaa tgaggtacat cactatgaca tcaacacgag caacaaaaca
     6661 agcacttatt aagcaattaa cacgatacaa agacagtacg ggctgcactt accaagatat
     6721 agcggatgaa atcggaagca ctcacggagc tgtatataat tggctgacag ggggctactt
     6781 gccaaccgag agcaatgtgg acagcatcaa gattttttta gcaagtaaga acatgctgac
     6841 acctactgcc cgaatgagtg acaaaacagc tttgaagctt gtcacagact tattgaacta
     6901 caaaaaacag cacaatctaa gtaatgacga tttagcacag cagttaaaca tgcacccgaa
     6961 taacatttca gaatggcaaa aagggacagc gaagccaacc gccttgaatg cctaccgtat
     7021 catgaagcta ttagacggac aaactgaaca gccaacactt ttcacaatgg ataaggcttt
     7081 ttctgacatc ttccagacga gtgacaacca tggcaactta ttgaacctga ttgaagtgga
     7141 tggcgtgccg tacaccacta gccgaatgat tgcagagaaa ttcaataagc aacacgggca
     7201 tgtaatgcgt gatatggatg agataaaaga ggggttatcc aaatctggag agacccccga
     7261 aaagccttat tttatcgaat ctagctacat ccatgagcaa aacaaacaag aatatcgtga
     7321 aattctgata aacaaaaaag gctgtatctt gtatttgttt aacatccaag gttatcaaga
     7381 agaaaaaatg ctatttattg agagttttga gaagatggag caagctttga atgaaacacc
     7441 gacccagcaa ccaacaccag aaccgacatt gacaccgcag atagacgaat cgcccgaact
     7501 tgcctatatc agaagtaagc tgacggaaat catggcagaa agtgacttac aggcaattta
     7561 caaggatttg aaccagctcc agacctttgt aactatggtc aaaccatggc aagcaacacc
     7621 aaaagaagag ctaccgccgt caaatttagg agttaggaaa taaagaccgc aaacacgtat
     7681 agtaaaaacc aattacagaa aaaacgaggt aagaactaca tggaacagta ttttgaacaa
     7741 tttgaagaac ggttacaagt tgcagaagaa aagctagaca ttttaagcga ttggcatatc
     7801 gccaaaggtc acaagggagc tactgaaatt gctgaagagt gcaggagggc tattacaaca
     7861 ctctggatgg agttttacag gttttcagag gcatataaag aggctgaggc aggtcatgaa
     7921 gagttttatc aagcgaatgt ggattatttg ttaggggaat taagaaaaca cgataatata
     7981 cttttagaaa atgcgctatc aatcgggaaa ggatacccca actatctttt gtttgattat
     8041 ctggataaag agcaacagat ttttgaaaat cctgacaatt tagcaacagc gccaacaggg
     8101 aatatttggc actatatccg cagtctaata atcaaagacc agaaagagcg aggtatttta
     8161 taaaatgcaa gaaatgacaa tcgagaccgc tttgacccta ctagcaatct ttacaccgct
     8221 gaacctctat ctatggtttg gcgttggttt aggcacttat cagctccata gcaagccgaa
     8281 aaatgtttct gagggtaatc ataccagaac tcttgaaaac gagcgctacg gggcttatat
     8341 acagcttgca ggaaaacgct ataactagga gggcaacgaa tgacaaagaa ccaactgcca
     8401 ccacacttaa acaaagtttt caagctccta ccgcttggaa tggacttacc tatcacgggg
     8461 acagatattg agaagctgac aggcttggac gttcgaacca ttcgggagca tattcgtcag
     8521 cttattgttg attatggcat tcccgtatgc ggcgggcgtg ataacaagca agggggctac
     8581 tatatccccc agaatgaaac agaacgactg gcgggagtgc taccgctcca acggcaatac
     8641 gaccaagagc ataagcgtat tcatgcatta ttgacggcag atttgacaga ctggaggaag
     8701 tatagagatg gttaacatac tatcacgaga agcagaactg gagttactgg agaaggtgga
     8761 cagacatctg gacaagcgac tagagcttga gaaacaacag ctagagcggt ttgacttgat
     8821 accagcggac gaagtagctg ataagttaaa tgtttctgga actacgctga gaaattggga
     8881 acatatgggc ttgcagcgtt atcaatcgcc atttgagaat agcaagaaaa tattttatcg
     8941 agcgagtgac atatacaact ttttggcggt tgagtgagta aaaagggtaa taaatttcga
     9001 gattattcga agaaactcaa taaaatcaac gctttacggt attggatatt acaacatttt
     9061 caaataaagg gggtaagcat ggcaaaaact aaaatatatt tttggttgaa gattgataaa
     9121 aaattttttg ataatatttt cattaagaga ctgaagacta ttccaggcgg ttacactatg
     9181 acagtaattt acatccgtct tatgcttgaa agtttagaaa gtgattgcat tctctactac
     9241 gaaggttatt ttgaaaatct caaggaagaa ttggctttga agttggatgt atcggaagat
     9301 gatatcgata tgaccatggc atactttaca aaatgcggac taattcagat tgacgaagac
     9361 caaaacgcag agttgccaca ggctaaagct atggttatga gtgaaacaaa ctgggctagc
     9421 tacaaacggg aacaacgaca aaacaaagaa agattggaca atgtccaaaa gtctttgact
     9481 aattccaatt cgtgtccaac agagatagag atagaggaag atataaataa agatataaat
     9541 aaagatataa ataaagatat aaataaaggt atatattccg aattgaacaa ttctgctgaa
     9601 cagagttcag cgtatgtttt tcccgattgg cttaatcaat catctatcga tgaactaaaa
     9661 aaagtcaatc caaagaatta tcccctttac atccctatcc agtacctcaa tcaagaaact
     9721 ggacacgctt ataaatttat agctactcac accaaattta ttcaagctag atacaaagac
     9781 ggctatactc ttgaagactt caagaaagtt attgatacca aggtagccca gtggaagaat
     9841 aataccgaga tggcaaaata tttacgtccc aaaaccttat tttcacctag caactttgat
     9901 agctacttga acgaagtccc aaaacatatt caaacagagc aggataacat agagccatta
     9961 ccattttaga aaggggcaag catggaaaat catttggaca aaattactgt actggatgag
    10021 ctttgcgaaa agcacggcac accgctttgg caattccctt atacgagcca aggacaagaa
    10081 cacatttcta aaatgtgcca agtctgtacg caggaaggca tagccctgac ggagcaggaa
    10141 actttggaag aggcacgcaa ccgccagagg tatgtgacaa cctatgatgt acttatgcgt
    10201 gacagcattg taccaaaaga actgagaggg gcaagctttg agaacttcaa ggcagaaacc
    10261 ccagaagaaa aacaattact ggagtttgcc agaggacagg ttgagaagta caaacaaggt
    10321 atgactggca acacgctgat cactggccag acaggtattg gaaaaagtca cttgtctttt
    10381 gctatggcta aggcaatcaa cgagcatttc aaggagattg gcaagcctaa gagcgtgtta
    10441 ttcgttagct tgactgaaat cattaagcag attaaaaacg gctggaacta cggcaaaggg
    10501 gcaaacctga cagagtttga tgccgttgag caattgacca acgttgattt tctcatcttg
    10561 gacgatttag gggcaaagaa tgcgactatt gctcctaaaa gtgattggga gcaggatttt
    10621 ctatttgaca ttctcaataa ccgagaaaca acaatcatca acacaaatct gaatagccag
    10681 gaaatcaaga ccgtttacaa tgcacgaaat gcaagccgaa ttttcaaagg attagagggg
    10741 aattcgttca aggcctccag catttcagac aaacgttaca ccataaacga atttaagcaa
    10801 ggagaacaaa caaaatgacc gaacaagaat tttttgagca agcagacaaa gagcttgagg
    10861 aattaaacca gcgccgtgct aactatatgg cagatgatac gcctgtagaa gttgccgaca
    10921 tcccaaaatt gctaaaaatt ggtgcgatgc tacggaatga agatactagc ttaaacgcct
    10981 atgaactata taagcaccca gaggccagag ctaagttatt tgcacagatt acagaggcct
    11041 gctatatggt tattggtcaa actccaagcc aatccgagaa actgaacttt gggcagtacc
    11101 tagagggaca atttcaggca atagtgaaaa agatgattgg tcagaccaat acacaggcct
    11161 tgggcgagct agtggcagcc ttagacttag acgataaact ggcaagccaa tttatccgag
    11221 atattgcagt tagtggacta ttgagcaaag ataaccaaaa acaaacaaat tagagggggt
    11281 gggcagcatg gaagaagaag ttgaattact caatacagta cgaaaaggct ttattttata
    11341 caacaaacat gatataatag tgaaagagaa aaccccagac tttggggaga taactctata
    11401 ttttcaagat ggcaagttta cacatcttgt caagaaagaa actaaaaaat agtctattgg
    11461 gaacaaccct ggggcgcact atatggcatt attgctgtgt ttagtgtgcc cctttttgtt
    11521 tgtagaaagg aggtaaaaaa atgagtaagc aacaaattat gaaaagattg aaagctattg
    11581 aattggcgtt aactaataaa gaatacaacc gcgaagaaat catagccgaa tggctagcag
    11641 tgattcgcca gatgatatgt tacccagata ttcagaaaca acttgaggaa ttgccgtatg
    11701 atattaaatt ccgcacattc gctgaaaatg aagaattcag aaaacaaatc aaaaccattt
    11761 taaaagagga gaactaacaa aatgaccttg acactatact ttgctaagac aaaagaatac
    11821 aagaatatta tccaaaaata cattgacgct ctgacggaat ggcgcagaat ggtcgagctt
    11881 gatataagac ccgagcgcat tacagaattc agaaaaaacg ctaaaaaaga aattttagac
    11941 gtgtataacg cttatcgtga caaaaaaatt gacgaagcac gtcagcaaat ggagacgatt
    12001 gagaaacgtt acaagaacac tcgtagcgta tattcagacc cacaagcgga aattttacgt
    12061 agacaagatt ttgaccttga attttcagca atggagtaca atgatattgt tgaattgttg
    12121 agcgatgaaa aacgtgactt tactgactat gaacttaaaa aaatcaacgc acattatcgc
    12181 agagacttaa aaatccagac acttttggac agtcagaaac taaagagaaa agagcagtat
    12241 aaaaacgacc cagaatatca aaagtatttt gaagaattcc aaacgttgca ggcatttaga
    12301 gggatagggc ttggcatgat ctatcttcca agtgacgaag atccaaaagg gtatataacc
    12361 gaaaatctag agttgatttt ggacagtgaa cagtatgcac attctttgag taatcaaatt
    12421 caaaaagtta gccagttgct tggtaacatt ccaacaatga agggttcaaa ccctactgta
    12481 tttactaaag cattgccagc taaaaaaatg gagtttgaag aatttgacga gcgtattttt
    12541 gaagaatcgc caaactacga tattactatt agattcaaat acctcaaaga acgactagac
    12601 gacacaacta cagacagatg ggattttacc cgtgatgatt atgacgcata tcagcactat
    12661 caatacttag aggggcggca tgaacaaaaa atgaaaaatg attttaaata taaacaacgt
    12721 tacataagtg ctaaaaacgc aataattgaa cgaaagaatg aagaagtgaa atgagttctt
    12781 tgacagcaaa acaagaaaaa tttatgctcg ccttgatgac tgcaccgacg gtcaccgagg
    12841 cgagtaagct tgctggaatt gcaaggagta caggacagaa gtatctaaaa gatattacat
    12901 tcaaacgagc ttacagacaa tatcgcacag acatcatgca gcaagctaca ggcaagttgc
    12961 agaatgctag catacgagct gtggaagttt tagaagaaat tatgaacgat gaaacggtta
    13021 gcccttatgc acgacaacag gcagcgcaga ccgttctgaa tatggctatg aagtcgcatg
    13081 aggtggacaa cgtgcttgaa attgttgaag agcttgaatt aagaatagcg gaggaataaa
    13141 aaaagccagc acacttgtac tgacggtgta aaaattcttt atgatattgc aaagggtacc
    13201 caatcagcct gcccgtgcaa gagttcaggc ggttagaact atcttagaat acgcttataa
    13261 gggaattgag ttagaagaga tacagacaag actagaagag gtacttgaag gatgaataga
    13321 aaacgagtgt tacgacgtct gaaaacaatt gaagcaagaa taaacacccc agtgattcat
    13381 acagccaaac caactttttg cgatgattac tctatcaaat cttggcaagt ttctgctcct
    13441 gattttgata aaacctttcc tgaagatgat ttttataaat ggtcaaaagg gaaaattgtc
    13501 ggtataaatt ttgaagatgt gagtacagaa gtattaaggg gatttataca tagcggtaac
    13561 tgatgcaaca aaaaaagcgg tattttcaaa ttcgatgccg cttttaattt ttataaaagc
    13621 caatgcgcac gcactgacta tgtgagtaaa aacctaaaac tattatatca cagttggagg
    13681 gcgctagctt gattttttta gatacgatga tagacgaaaa gaagacaata gcaatcacta
    13741 aacgatactt gaaacaatat ccacgattga aaaccatagc acgtactacc accactttac
    13801 aaagtagttg gaatgtatcg gataaggtaa aatcaggaac gacccgaaac acacaagaag
    13861 ataggttatt gaacgctatc gcagtaagcc aggaagtgga agagatagag cgagctattt
    13921 caaacttaga taagctacat agtgacatac taacagagaa gtatatcaag cgacagaaaa
    13981 caggtttgac actctatgaa agtttttaca tgggaaagtc agcattttat gaaacattac
    14041 aaacagcttt gttagacttt gcttgtatat ttaagaatgg ggaattgttg caatatctgg
    14101 atagtgagcc atagcggact atttttgtca ttttgcccat tttgagcaaa tagaaatcaa
    14161 atctcgcaac cattattgac aaaatggcga ttttgaacga atacagtaaa aacatgatac
    14221 aatacactta ccagcaatcg aaaaagcgta tcgaattgat acgctgattc ttgcttactg
    14281 aactcatctt tttaattccc tttttagtta ccctttatgt ttcctgtact tgtctaagtg
    14341 tttgaaattt tgatagaatt gaggtaaatt ctaatcaaaa taagccctgt ttgcaggtat
    14401 tgaaacattg tcagataact tgaaaaaata aattagtaca gtgtactaat ttatccccga
    14461 gttagaataa cgagggttat agtaaaaaca agtccgaaga ttttcggact tgttttcaat
    14521 gtctgggaga ctgttttatc cctgagctag catagcgaag gttataataa aaacaagtct
    14581 ggaaat
//
LOCUS       DASGAC010000039        14073 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.039, whole genome shotgun sequence.
ACCESSION   DASGAC010000039 DASGAC010000000
VERSION     DASGAC010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 14073)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14073)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14073
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.039"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(397..1260)
                     /gene="rsmI"
                     /locus_tag="U1335_000926"
     CDS             complement(397..1260)
                     /gene="rsmI"
                     /locus_tag="U1335_000926"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEM5231419.1"
                     /translation="MKVQKSFKGQTSFGTLYLVPTPIGNLQDMTFRAVQILKEVDIIA
                     AEDTRNTGLLLKHFEVETKQISFHEHNAHEKIPVLIDWLKSGQSIAQVSDAGLPSISD
                     PGHDLVGAAIAEDIPVVALPGASAGITALIASGLAPQPHIFYGFLPRKSGQQKEFFQE
                     KKTYPETQIFYESPYRVADTLENMLTVYGDRQVTVVRELTKLYEEYQRGSISELLEYL
                     EENPLKGECLIIVEGAGEVVYPSADEVDLKAEVEREIASGIKPNQAIKEVAKRYQLKK
                     QEVYDVYHGLG"
     gene            complement(1262..1579)
                     /gene="yabA"
                     /locus_tag="U1335_000927"
     CDS             complement(1262..1579)
                     /gene="yabA"
                     /locus_tag="U1335_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication initiation control protein YabA"
                     /protein_id="HEM5231420.1"
                     /translation="MDKKEIFDALDDFSQNLLTTLAEVDAIKKHLQGVIDENTTLRLE
                     NSKLRERLEKDDKTGHKSSNFGKENLENIYEDGFHICTFSYGQRRDNDEPCMFCVELL
                     NRD"
     gene            complement(1599..2483)
                     /locus_tag="U1335_000928"
     CDS             complement(1599..2483)
                     /locus_tag="U1335_000928"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEM5231421.1"
                     /translation="MKIEELRNLQPNVFQRFVTILEQRRLAHAYLFSGDFASFDMAIF
                     LSQSLFCQEKEGVLPCQKCRSCRLIEANEFSDLTVIAPQGNVIKTDTIRELVKNFSQS
                     GFESNKQVFIIRDAEKMHANAANSLLKVIEEPQSAIHIFLLTNQEEAVLPTIKSRTQI
                     IGFPKNIPAMERMLEEEGLLKTQANLLAQLVSSQEEAKKLAENKNFLDLMGQAKKFTD
                     LLLVEPTRAYLQVGILVSLAVEKAEQGRLFDLLSLILSEKMMESANVREKMDAVLKAK
                     KMWQANVSLQNSLEYITL"
     gene            complement(2480..3118)
                     /locus_tag="U1335_000929"
     CDS             complement(2480..3118)
                     /locus_tag="U1335_000929"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEM5231422.1"
                     /translation="MRNGFFITFEGPDGAGKTTVLQQLLPALQELGPEVVTTREPGGV
                     AIAEEIRNIILNPANTAMDDKTELLLFIAARRQHLKEKILPPLAQGKLLLIDRFIDSS
                     IAYQGFGRGLDIDDIHWLNQFATDGLKPDLTLYFDIDTEEGLARIARNADRDVDRLDM
                     EKADMHRRVRQGYLSILEQEPERFVKIDASQPLEAVVADALAVIRKRFAERT"
     gene            3293..4159
                     /locus_tag="U1335_000930"
     CDS             3293..4159
                     /locus_tag="U1335_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM5231423.1"
                     /translation="MVRLKNILLILLGAGLFAFGLNYLIMPNRLFEGGATGLTLIIYY
                     LFHIQPWIMNIVINIPLFILGWKILGKKTLYLSILGTFSVTFWLAIFEKIHFSINLQQ
                     DLILVSILGGILMGLGLGTIFRAGGTTGGSDIIARIGHKFLPYSIGQIILAVDILILT
                     LIVIVFKDLRTVLYTLMMVAIASKVIDFVTEGGYGSKGVMIVSQKSDQLAQAIDCEIE
                     RGVTFIKAQGFYSKADVNMIYSVIYKSQLQEMKELIHRIDPHAFITITDAHEVLGEGF
                     TLDRDKKPIERH"
     gene            complement(4196..5467)
                     /locus_tag="U1335_000931"
     CDS             complement(4196..5467)
                     /locus_tag="U1335_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxic anion resistance protein"
                     /protein_id="HEM5231424.1"
                     /translation="MSGFNFDIDQIANNSLSTKDKTTELIQATPTGDNSKVSFLAQLT
                     PEQQTGIRAKAPQLVDNFLANQNALLDFGKEAVEEVNATVNHILSEQKKIEIPQVDEL
                     LANTNRELNGFVAKYKDISTTAELEKKPGFFQRLFKQTKNDLQEFYFDSQTIEKKMDS
                     MAASVVKQEEVLARNIVSAELLIENNTKSIENLVGVIAFIEATGQEAAQRAKAEQERL
                     AGLQPTTVDYQVASEKLARVTEVANILEQQHSEYMSRLYVAWTTTPQMRNLVKVSSDM
                     KQRLGMLRRNTIPTMKLSIAQLGILQQSIKSSQTADAIVNANNAALQMLADTSKEAIP
                     MMERTAQNPTLSVASVTKLAESLVAQNNGIIAAIDEGRQKRRELEAAIVRSAETINDS
                     VKLRDQKIIAALLEQGKEAQSEAEQPLETNQ"
     gene            complement(5473..6300)
                     /locus_tag="U1335_000932"
     CDS             complement(5473..6300)
                     /locus_tag="U1335_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231425.1"
                     /translation="MGYKYKKYKKYGKNNSGLVALLVLLAIGFVMSFWYILLPIGLLI
                     GYFYKREAIQHFLNGDSIKRLQVLALSIRSGYEKHQELLVEKGEDKVVLQLRNRLLGQ
                     LFELDQLYQKVGKYLNGYESKEVVDTLQLKYHLKLPEAKTEKNTDTQVSTGGNAVMDE
                     QGMIADLAPEILETYCNIQRDNLVILEKLEKATDKREELTAIHEANMNRFNDILQGYL
                     KIKKSPKDYFNAEERLVQAKSAMEMFDKDLDDTIKQFNEADMKDFEVSLRMMKREEE"
     gene            complement(6394..7050)
                     /locus_tag="U1335_000933"
     CDS             complement(6394..7050)
                     /locus_tag="U1335_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004256822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEM5231426.1"
                     /translation="MSVKDFMTRKVVYISPDTTIAHAADIMREQDLHRLPVIENDKLV
                     GLVTEGTIAEASPSKATSLSIYEMNYLLNKTKVEDVMIKNVITVSGYASLEDAVYLMY
                     KNKVGILPVVDNGQLYGVITDRDIFAAFLHVSGYGEEGVRARFLVENKAGELEKIIRL
                     VADKDYNIVSTVQLATKSGKVVIEVQIDGKVDVEEVRTLFESAGIQVDSLVPTVAKNI
                     "
     gene            complement(7134..7889)
                     /locus_tag="U1335_000934"
     CDS             complement(7134..7889)
                     /locus_tag="U1335_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HEM5231427.1"
                     /translation="MIKVEEILSTLPPNQKVNYDKVFQKMASTWQEAGLRPNILMHVC
                     CAPCSTYTLEYLTQYADVTIYFANSNIHPKAEYQRRAAVTAQFVKEFNQKTGQSVGYL
                     EADYSPQEFFKKTQHLANEPEGGDRCKVCYDYRLDKTAEKAVELGFDYFGSALTISPH
                     KNSQTINAVGIEVQKLYDTQYLPSDFKKNGGYQRSVQMCEEYDIYRQCYCGCVYGANA
                     QGVNLVQVKKEALEFLKTHRDYSHIPFKVLDKN"
     gene            complement(8252..8962)
                     /locus_tag="U1335_000935"
     CDS             complement(8252..8962)
                     /locus_tag="U1335_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000062217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231428.1"
                     /translation="MAMLEVKNLSVNYGVIEAVKDVSFEVNEGEVVTLIGANGAGKTS
                     ILRTISGLVRPSAGTISFLGNEIQKVPARKIVADGLSQVPEGRHVFAGLTVMENLEMG
                     AFLRNNREENQANLKKIFARFPRLEERKNQDAATLSGGEQQMLAMGRALMSQPKLLLL
                     DEPSMGLAPIFIQEIFDIIQDIQKQGTTVLLIEQNANKALAIADRGYVLETGKVVLSG
                     TGKELLASEEVKKAYLGG"
     gene            complement(8962..9726)
                     /locus_tag="U1335_000936"
     CDS             complement(8962..9726)
                     /locus_tag="U1335_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231429.1"
                     /translation="MALLEVKDLTKNFGGLTAVGDVTMELHEGELVGLIGPNGAGKTT
                     LFNLLTGVYEPSEGTISLAGTILNGKAPSKIASLGLGRTFQNIRLFKNMTVLENVLIG
                     LGNHGKSEVFASFFRLPAFYKNEEALKTKAIELLKIFDLDGDADTLAKNLPYGQQRRL
                     EIVRALATEPKILFLDEPAAGMNPQETAELTQLIRKIKEEFGITIILIEHDMSLVMEV
                     TERIYVLEYGRLIAHGTPEEIRNNKRVIEAYLGGEA"
     gene            complement(9726..10673)
                     /locus_tag="U1335_000937"
     CDS             complement(9726..10673)
                     /locus_tag="U1335_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEM5231430.1"
                     /translation="MKQNLKVNAIWLAILLAGFGLIQGLVSAGILNFYYIQIVQQIGI
                     QIILAVGLNLIVGFSGQFSLGHAGFMAIGAYAVGILGKMMPSYGGFAIALLVGMLVAG
                     GVALLVGLPTLRLKGDYLAIATLGVAEIIRILIINGGSVTNGAAGIMSIPLFTSWPLV
                     YIFVIITTLVTVNFLRSPMGRATISVREDEIAAESVGVNPTFVKVSAFVFGAMTAAIA
                     GGLHAGYVGTIVPKDFAFMTSVNVLIIIVLGGLGSITGTFVAAIVLGILNVFLKSYSD
                     ISMIIYSLALILLMIFRPGGLLGTKEFSVAALLKKKEVK"
     gene            complement(10676..11563)
                     /locus_tag="U1335_000938"
     CDS             complement(10676..11563)
                     /locus_tag="U1335_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002897070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEM5231431.1"
                     /translation="MLQQLVNGLILGSVYALLALGYTMVYGIIKLINFAHGDLYMMGA
                     FMGYFLLNNLTFIADGGTRFFVALILAMVGTAILGVVIEFLAYRPLRNSTRIAALITA
                     IGVSFFLEYTMIKFFTADVKAFPQAIEAVTFNLGPVSVTNIQLIILGVSLALMVALQL
                     IVKRTKMGKAMRAVSVDSDAAQLMGINVNRTISFTFALGSALAGAAGVLLGLYYNQIE
                     PLMGMTPGLKAFVAAVLGGIGIIPGAALGGFVIGIIETFTYVIEFDTFRDAIVYAVLI
                     IILLVRPSGILGKNVKEKV"
     gene            complement(11759..12928)
                     /locus_tag="U1335_000939"
     CDS             complement(11759..12928)
                     /locus_tag="U1335_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5231432.1"
                     /translation="MKTRKFAVALATFASAALLAACGNVSTTNTSAAGSSVGDTFKIG
                     YNLELSGAVSSYGQTEEKGANLAVKEINAAGGIDGKKIEVITKDNKSETAEAATVATS
                     LASEGANVVIGPATSGASAASIPALTSAGVPMITPSGTQTNLVVNDKGEVQEYFFRTT
                     FTDGYQGQIMAKYATENLSAKKVVLYFDNSSDYGKGVAEAFKKAYTGEIVSEITFASG
                     DKDFQAALTKLKDKEFDAIIMPGYYNETGTIVKQARGLGIDKPILGSDGFDSPQFTEL
                     ATASAASNVYYLSAFVTSASEKAQAFYDAYKKEYNEEPSMFSALAYDSVYMAAEAAKG
                     VADSAAVKANLAALKDFEGVTGTMSVDKEHNVVKSVYVVGLTNGEESSVDTISID"
     gene            complement(13060..13332)
                     /locus_tag="U1335_000940"
     CDS             complement(13060..13332)
                     /locus_tag="U1335_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbG family protein"
                     /protein_id="HEM5231433.1"
                     /translation="MFEKKNRTCLTVYLHYNRDARKLSQYGDIVYHSKRLRYVLVYMD
                     QELVEAAILKLKKERFVKKVVPSYIKELDQNFVGNLWRDEEPSVVG"
     gene            complement(13459..14049)
                     /locus_tag="U1335_000941"
     CDS             complement(13459..14049)
                     /locus_tag="U1335_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HEM5231434.1"
                     /translation="MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIA
                     QLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGTAASMGTIIA
                     SSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGK
                     TVKQIHKDAERDYWMSAEETLAYGFIDQIMDNTKVK"
BASE COUNT         4148 a         3152 c         2503 g         4270 t
ORIGIN      
        1 ttgtaaaaat attcggattt cttatattta ttttactttc taaagaacct cttactttta
       61 gccataaacg agccacttac ctcacaggga tttatcagtt ttcaatgaga attttatgac
      121 cagatttgac tgtttgggga gtgtcgtcaa ttgctatctg catattaata ctcaatgaaa
      181 atcaaaagta gcttagctgg gatatagttg aaggctggaa gtatagagaa ctgtgttcgc
      241 gtcattaagc cgaagataga actctgttac tttctcattt caaggtaaca ggctgaaaat
      301 atccactgga gcttttcact catcaaggct cttgacaacg gataattttg attttcgaag
      361 agtataagct tgcataaaca tacaaaaaac taggccttaa cctagtccat gataaacatc
      421 gtatacttct tgttttttga gttggtagcg tttggccact tctttgatag cctgattagg
      481 ttttatgcca cttgcaattt ccctttctac ctcagccttc aagtctactt cgtcagcaga
      541 aggatagact acctcaccag caccctcgac aataatcaag cattctccct taagtggatt
      601 ttcttccaaa tactctagta attcggaaat gcttcctctc tggtattctt cgtataactt
      661 ggtcaactct cgaacaactg ttacctgacg atcaccataa actgtcaaca tattttctaa
      721 ggtatctgcc acacgatatg gagattcata gaaaatttgc gtctcaggat aggtcttttt
      781 ttcttggaaa aattcttttt gctgccccga ttttctcggt aaaaatccat aaaaaatatg
      841 tggttggggt gccaaaccag atgcaatcaa ggctgtaatt cccgccgatg ctcctggaag
      901 tgctacaaca ggaatatctt ccgcaatcgc tgcccctacc aggtcatgac caggatccga
      961 aatggaaggc aaacctgcat cagaaacttg cgcaatggac tgaccagatt tgagccaatc
     1021 aatcaaaact ggaatttttt catgggcatt gtgttcatga aaggatattt gcttggtttc
     1081 tacttcaaaa tgtttgagta ggaggcctgt atttctcgta tcttccgctg caattatatc
     1141 cacttctttc aaaatctgaa cagctcggaa tgtcatatcc tgtaagtttc caattggcgt
     1201 tggcaccagg tataaagtcc caaaactcgt ctgtccctta aatgattttt gtactttcat
     1261 cctaatctcg attcaataat tctacacaga acatacaagg ttcatcatta tccctacgtt
     1321 gaccataaga gaaggtacaa atatggaaac catcttcgta aatattctcc aaattctcct
     1381 taccaaagtt ggaagattta tggcctgtct tatcatcttt ttccaaacgt tcgcgcaact
     1441 tggaattttc caaacggagg gtcgtatttt catcaataac tccctgtaaa tgctttttga
     1501 tagcatccac ttctgccaac gtggttagaa gattctgcga aaaatcatct agggcatcaa
     1561 aaatttcttt tttatccatt atctcccttt cttttatttt acagagttat atactctaga
     1621 ctattttgta gacttacgtt tgcctgccac atcttcttag ccttaagaac agcatccatt
     1681 ttttcacgta catttgccga ttccatcatt ttctcagata atatcagact cagaaggtca
     1741 aacaaacgcc cctgctcagc tttttccaca gctaaagaca ctaggattcc aacttgcaaa
     1801 tatgcacgtg taggctccac caagagcaag tctgtaaatt tctttgcctg tcccatcaaa
     1861 tctaaaaagt ttttattttc tgctaacttt ttcgcttctt cttgacttga aaccagttga
     1921 gctaagagat tcgcttgtgt ttttaacaag ccctcctctt ctaacattcg ctccatggcc
     1981 ggaatatttt taggaaaacc tataatctgt gtccgactct tgatagtagg aaggacagct
     2041 tcttcctgat tggtcaataa gaagatgtga atagctgact gaggttcttc aatcactttt
     2101 agcaaagagt tggctgcgtt agcatgcatt ttctcagcat cacgaataat gaaaacctgc
     2161 ttattggatt caaatccaga ttgtgaaaaa ttcttaacta attcacgtat cgtgtctgtt
     2221 ttgataacat ttccctgcgg tgcaataaca gtaagatctg aaaactcatt tgcttcaatt
     2281 aggcgacaag accgacactt ctgacaagga aggacgcctt ctttctcctg acaaaataac
     2341 gattgactga gaaaaattgc catatcaaaa ctagcaaagt cacctgaaaa tagataggca
     2401 tgcgccaaac gtctctgctc taaaattgtc acaaagcgtt gaaatacatt gggttgtaag
     2461 tttctaagtt cttcaatctt catgttcttt ctgcaaaccg tttcctaatg accgccagag
     2521 catctgcaac aacagcctct agtggctggc tagcatcaat ctttacaaac cgctctggtt
     2581 cctgctctaa aatactaaga tagccttgac gcacccgtct atgcatatct gctttttcca
     2641 tatccaagcg atccacatca cggtcagcat tgcgtgcaat tcgagccagc ccctcctctg
     2701 tatcaatatc aaaatagagg gttaaatctg gctttaaacc atctgttgca aactggttga
     2761 gccaatgaat gtcatctata tccaaacccc gtccaaatcc ttgataggca atagaggaat
     2821 cgataaaacg atcaatcaag agtaatttcc cctgtgccaa gggtggaaga atcttttctt
     2881 tcaaatgctg acgtcgtgct gcaatgaaca ataacagctc cgtcttatca tccatcgctg
     2941 tatttgcagg attcagaata atattgcgaa tttcttctgc aatagccacc ccacctggct
     3001 ctctagttgt gactacttct ggccccaatt cctgcaaggc tggtaataac tgttgcaata
     3061 ccgtcgtttt ccctgcccca tctggacctt caaatgtaat aaaaaaaccg tttctcatct
     3121 ttccctcgct cttagtacca gtatgcacag ttcagcactt cacttgtgaa gactggttct
     3181 tagatattca ttccatttta ccaaaaatta gtcaaaaaat cacttggaaa ttgacttgtt
     3241 tttaaggaga aaatctttta aaattgatat atacacatat tcggaggtgc ttatggttcg
     3301 tttgaaaaat attttactta ttttgcttgg tgcagggcta tttgcctttg ggctaaatta
     3361 tttaatcatg cccaatcgtc tattcgaggg tggcgcaact ggattgacgc tgattattta
     3421 ctaccttttt catattcaac cttggataat gaacattgtg attaatattc cattgttcat
     3481 cctcgggtgg aaaatactcg gaaagaagac tctctatctc agtatcttag gaacctttag
     3541 tgttaccttt tggttggcca tttttgaaaa aatccatttt tcaatcaatc tacaacaaga
     3601 tttgatactc gttagtatcc tgggtgggat tcttatggga ctaggattag gaaccatctt
     3661 ccgtgctggc ggaacgactg ggggaagcga tattattgct cgtataggtc ataaattcct
     3721 accttactcc attggacaaa tcattcttgc agttgacatc ctcatcctaa ctctgattgt
     3781 tattgttttt aaagacctcc gaacagttct atatacttta atgatggttg ctattgcttc
     3841 caaggttatt gattttgtca cggagggcgg atatggtagc aagggtgtta tgattgtttc
     3901 tcaaaaatct gaccaattgg cccaggctat tgattgtgaa atcgagcgtg gtgtcacctt
     3961 tatcaaggca caaggtttct acagcaaagc cgatgtcaac atgatttact cggtcatata
     4021 taagagccaa ctccaagaga tgaaggagct tattcaccgc attgaccccc acgcatttat
     4081 caccattaca gacgcacatg aagtgctcgg tgagggattt actttagatc gagataaaaa
     4141 accaatagaa cgccattaaa caaacctgca gtttcgctga actgcaggtt ttatattatt
     4201 gattggtttc aagtggttgc tctgcctcag actgtgcttc tttgccttgc tccagcaaag
     4261 cagcaatgat tttttggtca cgtagcttaa cagaatcatt gatagtctct gctgaccgta
     4321 caatagctgc ttccaactcc cgacgtttct gacgcccttc atctatagct gcaataatgc
     4381 cattattttg ggcaaccaaa ctttctgcca atttggtaac agatgctact gaaagggtcg
     4441 gattctgagc tgtgcgttcc atcatcggga tggcttcttt tgatgtatcc gcaagcattt
     4501 gaagggcagc attattagca ttgactatcg catctgccgt ctggctagac ttgatagatt
     4561 gttgtaagat gcccaactgt gcaatagaca atttcattgt tggaatagta ttgcgacgta
     4621 acatcccaag gcgctgtttc atatccgacg aaaccttgac cagattacgc atctgcggtg
     4681 tcgttgtcca cgcgacatac aagcgactca tatactcaga atgttgttgt tcgaggatat
     4741 tagcaacctc tgttacacgt gctaacttct cagaagctac ttgataatcg actgtagttg
     4801 gttgcagacc tgccaagcgt tcttgctctg cttttgctcg ctgggcagcc tcttgaccag
     4861 tcgcctcgat aaaggcgatg acccccacca aattctcgat agacttggta ttattttcaa
     4921 tcaaaagctc tgcagaaaca atattgcgcg ccaacacctc ttcctgcttg accacactgg
     4981 ctgccatgct atccattttc ttttcaatgg tctgcgaatc aaaataaaat tcctgcaaat
     5041 catttttggt ctgcttgaac aggcgttgga agaaacctgg tttcttttct aattcagcag
     5101 ttgtggaaat gtccttatac ttagccacaa aaccattcaa ttcacggttg gtattggcca
     5161 aaagctcatc cacctgcgga atttcaatct tcttctgttc tgacaaaata tgattgaccg
     5221 tggcattgac ttcttctacc gcttccttac caaaatccaa gagggcattt tgattagcta
     5281 agaaattatc caccaattgg ggagccttgg cacgaatacc tgtttgttgt tccggtgtca
     5341 actgggccaa gaaagatact tttgaattat ctccagtcgg agtcgcttga ataagctctg
     5401 ttgtcttatc tttggttgat aaactattat tagcaatctg atcaatatcg aaattaaatc
     5461 ctgacatctt ctctattcct cttctctttt catcatacgc agactgactt caaaatcttt
     5521 catatccgct tcgttaaatt gtttgatggt atcatccaaa tccttatcaa acatttccat
     5581 ggctgatttt gcctgcacca accgttcttc tgcgttaaaa taatctttcg gtgatttttt
     5641 gattttcaaa tacccctgta aaatatcgtt aaaccgattc atattggcct catggatagc
     5701 tgtcaattct tcccgcttat ctgtcgcctt ttccagcttt tcaagaataa caagattgtc
     5761 tctttgaata ttacaatagg tttctagaat ttcaggagct aaatccgcta tcatgccttg
     5821 ttcatccatc acagcattac caccagtaga aacctgtgtg tcagtatttt tttctgtttt
     5881 agcttctggc agttttaaat gatattttag ttgcaaggta tctacaactt ctttactttc
     5941 atatccattc agatattttc caactttttg atagagctga tctaattcaa ataattgtcc
     6001 taacagtctg tttctcaact gtaacacaac cttatcctca cccttttcca ccaagagctc
     6061 ttgatgcttt tcatagcccg aacgaataga tagcgctaat acctgcaagc gttttataga
     6121 atctccattc aaaaaatgct ggatagcctc tctcttgtaa aaatagccaa ttaagagccc
     6181 aatgggcaat aagatatacc agaaactcat gacaaaaccg attgccaata aaacaaggag
     6241 ggccacaagt cctgaattat ttttaccata tttcttatac tttttatatt tgtaccccat
     6301 agagcctcct catacgtgat atactttatt atatcacatt cccctaaaat actagaatga
     6361 tagctaaaga aaaaaaccga gaaatctcgg tttttaaata tttttagcaa cagtcggaac
     6421 caagctatcc acttggatac ctgcactttc gaaaagagtt cgaacttctt caacatcaac
     6481 ttttccgtca atctgcactt cgatgacaac ttttccagac ttggtagcaa gttgcacagt
     6541 agatacaata ttataatcct tatctgccac caatcgaata attttttcta actcccctgc
     6601 cttattttca acaaggaacc gagcgcgtac tccttcttct ccataacctg agacatgaag
     6661 aaaagctgca aaaatatcac gatcagtaat aactccatag agttgaccat tatccacgac
     6721 tggtaagata ccgaccttgt ttttgtacat gagatagact gcatcttcta gactggcata
     6781 gccagaaacg gtaatgacgt tcttaatcat cacatcctcg accttagtct tattcaaaag
     6841 gtagttcatc tcgtaaatag ataggctagt tgccttcgat ggactagctt ctgcgatcgt
     6901 tccctcagtg accaaaccaa ccaacttatc attttcaata acaggtagac ggtgcaaatc
     6961 ctgttcacgc ataatatctg cagcgtgtgc aatggttgta tctggtgaaa tataaacaac
     7021 tttacgggtc ataaaatctt taacagacat aggacttcct cctttggtaa atcatacttt
     7081 attataccac aaatccgaaa acgatttcaa tatttaatga aaagaaatga aaatcaattc
     7141 ttatccaata ccttgaaagg aatgtgggaa taatctctgt gcgtttttaa aaattccaag
     7201 gcttcttttt ttacctgtac gagattgaca ccttgggcat tggctccata gacacagcca
     7261 caatagcact ggcgataaat gtcatactct tcacacattt gaactgaacg ctgatagcct
     7321 ccatttttct taaagtcact cggaagatac tgggtatcgt ataatttctg cacctcaatc
     7381 ccaacagcat tgatggtctg cgaattctta tgtggactga ttgtcaaagc cgaaccaaaa
     7441 tagtcaaaac caagctcaac tgccttctcc gcagtcttat ccaaccgata atcatagcaa
     7501 accttacacc gatctcctcc ctctggctca ttggcaagat gctgagtttt cttgaaaaat
     7561 tcctgagggc tatagtcagc ttctaggtag cctaccgact gtccagtttt ctgattaaat
     7621 tctttgacaa actgggccgt cacggctgcc cgccgctggt attccgcctt tggatgaata
     7681 ttggaattcg caaaatagat ggttacatct gcatattgag tcaagtactc caatgtatag
     7741 gtcgagcatg gggcacaaca gacatgcatg agaatgttcg gtcgaagccc agcttcctgc
     7801 cacgtgcttg ccattttttg aaacacttta tcatagttaa ccttttgatt cggtggtaga
     7861 gtcgataaaa tctcttcaac tttaatcata caaacctcca aatatacatt cattatacta
     7921 tatttgaaga ccactgcata gatagcaata acatgagaga acactcccca tttccaccta
     7981 aaaaggtacc ccggactttg atataaagaa aaacgcctgc aggcgtttct catttccaac
     8041 ttaaaaaggt ccaaaaaatg aataaaagga aagactgtct gccgacggtc cctatttcca
     8101 acctaaaatg aggcatcagc ctcgagggac aaaccagcaa cccaagttgc tagttttcct
     8161 atctcccgat taaaacagcc caatcttgat ataaagaaaa acgcctcccg gcgtttccta
     8221 tttccaacct aaaaaggtcc cccggacctt tttagccacc cagatatgct tttttgactt
     8281 cttctgaggc gaggagttct tttcctgttc ctgagaggac aacttttcct gtttctagaa
     8341 catagccacg gtctgcgata gcaagggctt tgttggcatt ttgctcaatc aagaggacag
     8401 ttgttccttg tttttgaata tcttggatga tatcaaaaat ttcttgaatg aagattggtg
     8461 ccaagcccat tgatggttca tcaaggagca agagctttgg ttgactcatt agggcacgtc
     8521 ccatggccaa catctgttgc tcaccacctg aaagggtagc tgcatcctgg tttttacgtt
     8581 cttccaaacg tggaaaacga gcaaagattt ttttcaagtt ggcttgattt tcttcacgat
     8641 tgttacgaag gaaggcaccc atttccaagt tttccataac agtcaagcct gcaaagacat
     8701 gtcgaccttc tggaacttgt gacaaaccgt ccgcaacgat tttacgagca ggaacttttt
     8761 gaatctcatt tccaaggaaa gaaatcgttc cagctgatgg acgaacaagt cctgaaatag
     8821 tacgaaggat agaggtttta ccagcaccat tagcgccgat aagtgttaca acttcacctt
     8881 cattaacctc aaagctaaca tctttaacag cttcgataac accgtagtta acggaaagat
     8941 tttttacttc taacattgcc attaagcttc acctccaagg taggcttcaa ttacacgctt
     9001 attattacga atttcttctg gtgtaccatg ggcaatcaaa cgaccgtact ccaatacgta
     9061 tatccgctcc gtcacttcca taaccaagct catatcgtgt tcgatcaaga tgatagtaat
     9121 gccaaattct tctttgattt tacggatgag ttgggtcaat tctgccgttt cttgtgggtt
     9181 cataccagcc gctggctcat ccaagaaaag aatttttggt tcagtcgcaa gggcacgaac
     9241 gatttccaaa cgtcgttgtt gaccgtaagg aagattttta gctaatgtat ctgcatctcc
     9301 atccaaatcg aagattttca aaagttcaat cgcttttgtt ttcaacgctt cttcattctt
     9361 atagaatgct ggaagacgga agaaacttgc aaatacttct gatttaccat ggttgccaag
     9421 accaatcaaa acattttcca aaactgtcat atttttgaac aaacgaatgt tctggaaagt
     9481 acgaccaaga ccaagcgaag caatttttga tggtgcttta ccgttcaaaa tagtccctgc
     9541 aagagaaatt gtcccctcgc ttggctcata aacacctgtt aagaggttga aaagagtcgt
     9601 tttaccagca ccatttggac cgataagacc aaccaattcc ccttcatgaa gttccatggt
     9661 cacgtcacca acggcagtca ggccaccgaa gttcttggtt aaatctttta cttcaagtaa
     9721 tgccattact taacctcctt cttcttgagt agagccgcta cgctgaattc cttagttccc
     9781 aaaagacctc caggacggaa aatcatcaag agaataagag ctaatgaata gataatcatt
     9841 gaaatatcag agtaactctt gaggaatacg ttcaaaatac caagtacaat ggctgctaca
     9901 aaggtacctg tgatagagcc caaaccaccc aatacaatga taatcaaaac gttaacggag
     9961 gtcataaagg caaagtcttt cggaacaatt gtcccaacgt atcctgcgtg gagaccacct
    10021 gcaatggctg ccgtcatagc accaaataca aaggctgaaa ctttaacaaa tgttggattt
    10081 acacctacag attctgccgc aatttcatcc tcacgaacag aaattgtagc acgtcccatc
    10141 ggactgcgca aaaagttaac tgtcaccaag gttgtgatga ttacaaaaat ataaactaaa
    10201 ggccagcttg taaagagtgg aatagacata atacctgctg caccattcgt tacactacca
    10261 ccattgataa ttaaaatacg aataatctct gcaacaccga gagtcgcaat tgcaaggtag
    10321 tcacctttca aacgaagggt tggaagacct actaagaggg ctacaccacc agcaaccaac
    10381 ataccaacaa gcaaggcaat agcaaaacca ccataagatg gcatcatttt cccaagaata
    10441 cctactgcat aagcaccaat agccataaaa ccagcatgac caagtgaaaa ttgacctgag
    10501 aaaccaacaa tcaagtttaa accaaccgcc aagataattt gaataccgat ttgctgaaca
    10561 atctggatgt agtaaaaatt cagaatccct gctgatacaa gaccttgaat aagtccaaaa
    10621 ccagccaata agattgccaa ccaaattgca ttaactttta aattttgctt catggttaca
    10681 ccttctcttt cacattttta ccaagaatac cacttggacg aacaaggagg atgatgatca
    10741 atacagcata aacaatcgca tcgcggaaag tatcgaattc aatcacatag gtgaatgttt
    10801 cgatgatacc gataacgaag ccaccaagtg ctgcacctgg aataataccg ataccgccca
    10861 atactgccgc aacaaaggct ttcagacctg gggtcatccc catcaaaggc tcaatctggt
    10921 tgtagtagag acctaggaga acacccgcag cacccgcaag agctgatcca agagcaaatg
    10981 taaagctgat agtacggttt acgttaatcc ccatcaactg agctgcatcg ctatctacag
    11041 agaccgcacg catggctttc cccatttttg tacgtttgac aattaattga agagcgacca
    11101 tcaacgcaag cgatacacca agaataatca actggatatt ggtaacagaa actggaccaa
    11161 ggttaaaagt cacagcttcg attgcttgtg gaaaggcttt tacgtctgct gtaaagaatt
    11221 taatcatagt gtattctaag aagaaggaca caccgatagc cgtaatcaaa gctgctatac
    11281 gcgttgaatt acgcaaagga cgataggcta aaaactctat aacgacaccg agaatagccg
    11341 tccctaccat cgctagaatg agagcaacaa agaaacgcgt tccaccatct gcaataaaag
    11401 ttaaattatt taataggaag taccccataa aagcacccat catatacaaa tcaccatggg
    11461 cgaagttaat gagtttgata attccgtaca ccatggtata accaagggcc aaaagggcat
    11521 aaacagaacc aagaatcaaa ccattgacaa gttgttgaag cataggttca ccaatctttc
    11581 taaatatttt tcgagctcaa tagcattgtt acattataca aaattttctg aaaataagca
    11641 agttagacag ggagtttaat cattaccgaa aattttaccc aaattttata tccgcatgtc
    11701 tactattcta tacattctga caagtgaaaa agagggaatt ccctcttttc atccactatt
    11761 agtcaataga gatagtatct acagatgatt cttctccgtt tgttagacca acaacataaa
    11821 ctgatttaac aacattgtgc tctttgtcaa cagacattgt accagtcaca ccttcaaagt
    11881 ctttcagagc tgcaagatta gccttcactg ctgctgaatc agctacacct tttgctgctt
    11941 ctgctgccat gtaaactgag tcgtaagcta gagctgagaa cattgatggc tcttcattgt
    12001 attctttctt atatgcatca taaaacgctt gtgctttctc actagctgat gttacgaatg
    12061 ctgaaagata gtacacattt gatgctgctg atgcagttgc caattcagta aattgtggtg
    12121 agtcaaaacc atctgaacca agtattggct tgtcaatacc caaaccgcgt gcttgcttca
    12181 caattgtacc tgtttcattg tagtaaccag gcatgatgat agcatcaaat tccttatctt
    12241 tcaattttgt cagagcagct tggaaatctt tatcgccaga agcaaatgtg atttctgaaa
    12301 cgatttctcc tgtgtatgct ttcttgaacg cctctgctac acccttacca taatcagaag
    12361 agttgtcaaa gtaaagaaca actttcttag ctgacaaatt ctcagtagcg tatttagcca
    12421 tgatttgacc ttgataccca tctgtaaagg ttgtacggaa gaagtattct tggacctcac
    12481 ctttatcgtt cacaaccagg tttgtttgag ttcctgaagg agtaatcata ggaacaccag
    12541 cagatgtcaa tgctggaata gaggctgctg aagctcctga tgtagctggg ccaatcacaa
    12601 cgtttgcccc ttcacttgcc aagcttgttg caacagtagc tgcctctgct gtttcagact
    12661 tgttgtcttt tgtgattact tcgatttttt tgccgtcaat accacccgca gcattgattt
    12721 ctttcacggc aaggttggca cctttttcct ctgtttgacc ataagatgaa accgcacctg
    12781 acaactccaa gttgtagccg attttaaatg tatcacctac agaagaacct gcggctgaag
    12841 tattggttgt cgaaacatta ccacatgcag cgagtagagc tgcagaggca aatgtagcaa
    12901 gcgctactgc aaattttctt gttttcatga aaactcctta aatctttctt aaattttacg
    12961 atgtatccaa tatactgaat tatctgaaaa ttgtcaacaa aaaaagaaaa aattttaaaa
    13021 ataaaaaatt agcaggggat acatacctgc taattccgac tatcctacga ctgatggttc
    13081 ttcatctctc catagattac ctacaaagtt ttggtctaat tccttaatgt atgaaggaac
    13141 cacttttttt acaaaacgtt cctttttcaa ttttaatatg gcagcttcta ctagttcttg
    13201 atccatatac accaaaacat atcgcaagcg tttggaatgg taaacaatat ctccatattg
    13261 gctgagttta cgtgcatcac gattgtagtg taaatagaca gttaagcaag tgcgattttt
    13321 cttctcaaac atgtcttctc ctctaaaaat tctctttcta tattataccg ttttcaatga
    13381 taaatgaaaa gctccaacta cctgtaaaag agttggagct aataggaata gtcagtacta
    13441 ttacatattt atcactgctt atttgacttt tgtattgtcc ataatctggt caataaatcc
    13501 gtaagccaag gtttcttcag ctgacatcca gtaatcacgt tccgcatcct tgtggatttg
    13561 cttgactgtc ttgcctgagt tgtctgccaa gattttttct agcttattac gtgtttttaa
    13621 taggtgttct gcagcaatag ccatatctgt ttgctgagta ccgccaccag ttccccccat
    13681 tggctggtga atcatgtact ctgcatttgg caacatgaaa cgtttgccct tggcaccgct
    13741 tgatgcaatg atggttccca tgctggcagc tgttcccata acgatggttt gaacatcagc
    13801 tttaatgaaa ttcatcgtgt ctacaatggc aagacctgct gacaccgatc ctcctggcgt
    13861 gttaacatag aggtaaatat cctttgtagg gtcttgggca tcaaggaaaa gcaattgtgc
    13921 aatgatagag tttgccatgt tgtcctcaac tggtcctgtc aacatgataa tacggtcttt
    13981 caaaaggcgt gagtaaatat cataagaacg ctcaccacgg ctagtttgtt caataactac
    14041 tggaatcata aaattactcc ttttcgagat ttt
//
LOCUS       DASGAC010000040        14000 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.040, whole genome shotgun sequence.
ACCESSION   DASGAC010000040 DASGAC010000000
VERSION     DASGAC010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 14000)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14000)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14000
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.040"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            89..3187
                     /locus_tag="U1335_000942"
     CDS             89..3187
                     /locus_tag="U1335_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEM5231435.1"
                     /translation="MKLQFKQQQFQLDAVASVVDVFAGQGKHSGFDYHMDKGQGMDAE
                     LDMNFIGFRNAPIQLSQDTISQQVRSQQLRYGLKPSENLSIQKVDGRPSYNLTIEMET
                     GTGKTYTYIRTLMELNKQYGWLKFIIVVPSIAIREGVLKSFEIMADHFQMEYGKKPRY
                     FVYDSSRLGELDKFANSSDIQVMIINSQAFNATGADARRIHTEQESFRWRKPIDVIAA
                     TNPILIIDEPQSVEGKKTKERLEDFKPLFTLRYSATHKDKHDMIYRLDALDAYNKKLV
                     KKIAVKTVEQTSTTGTQGYLYLQELVPQKSGAPKARIEFEMRTKSGDVKRVTKLVEEP
                     FALFEESGNLPAYQDGWTLSHFDAREGENSIQIGANRKLHVGEVIGETNEDDIRRIQI
                     RETIASHLQKEEGLYKRGIKVLSLFFIDEVAKYKCYDEQNDAYNGTYAQMFEEEYEAQ
                     VKALLADPNHHGSNFWHYLNNHQEGNPVHAGYFSVDKVKKSDKVKFVDYKSATEKRNN
                     QSNDKDAFDLIMKDKERLLSFDEPVRFIFSHSALKEGWDNPNVFQICTLKNTGTETEK
                     RQKIGRGMRLAVDQKGVRQDEELLGADVHNINKLTVIANESYEDFAKNLQRELKEILA
                     DRPSKVEVDLFVNKVLENEAGQKLTVTKEVAKEIEHQLIKQDYIDSKGNLTTTYFEQK
                     ETSQFVLSENLAGYEVAVKDILESIYDVNRYQIERENDSEVVFAREINPDNYNRQEFK
                     RLWESIHHKSTYYVEFDDEELIEKSVKVINAALFVKKPSYMITEAEAREMKAEQGLDF
                     KVNKDGKRQAELDKSSIQLRYDLLGEIASRTELKRKTVATILKQISPSKFDMFAYNPE
                     AFIQRTSRLINEQKASQVIEHIRYNILEETFDTSVFTDNPESGKLSDKRILESQKGVY
                     NYVKVDSDTERKFKEELDQFEEVMVYTKLPSEFKISTPLGAYNPDWAIAFRDGSVKHV
                     YFVAETKGSMSSLQLKGAELAKIECAKAHFKALKEKGLIADDHMYDVVDSYEKLLEIV
                     RG"
     gene            3523..4272
                     /locus_tag="U1335_000943"
     CDS             3523..4272
                     /locus_tag="U1335_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231436.1"
                     /translation="MPYRKLTSKVRSFIKGQTDRLLSEMNSNAAYLGTVQTYEAAKAR
                     MNQAYLAMELEDDPEKKVRLAKLVETYTAQAQAILDEWEEKNKRAEKNARDVKLILWL
                     TVLFALSFVFPVNIILAILFAVWFYRNYLRSSRIAQVPKSTASQSLVTEEESYEDWLT
                     EKIVTLNKDKREWTEDVLAKYDSLAEIAAGIGNIDEIDKEAGKKILHRYQAILADIEK
                     LPDSDQKTYYLDFHREMIADLENVFEQLHIV"
     gene            4480..6483
                     /gene="metG"
                     /locus_tag="U1335_000944"
     CDS             4480..6483
                     /gene="metG"
                     /locus_tag="U1335_000944"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019313364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEM5231437.1"
                     /translation="MTKTPFYITTPIYYPSGKLHIGSAYTTIACDVLARYKRLMGHEV
                     FYLTGLDEHGQKIEEKAKEAGLTPQAYVDGMAVGVKELWNLLDISYDKFIRTTDDYHE
                     EVVAAVFEKLLAQDDIYLGEYSGWYSVSDEEFFTESQLEEVFRDENGKVTGGIAPSGH
                     EVAWVSEESYFLRLSKYQDKLVEFFNAHPDFIQPDGRLNEIMKNFIEPGLEDLAVSRT
                     SFTWGVPVPSNPKHVVYVWIDALLNYATALGYGQEETANYDKFWNGTVYHMVGKDILR
                     FHSIYWPIMLMMLDMKLPDRLVAHGWFVMKDGKMSKSKGNVVYPEMLVERFGLDPLRY
                     YLMRSLPVGSDGTFTPEDYVGRINYELANDLGNLLNRTVAMINKYFGGQVPTFVANVT
                     DFDADLAAVVADNLASYHKYMEAVDYPRALEAVWNIISRTNKYIDETAPWILAKEEAD
                     RDKLAAVMAHLTAGLRVVAHLIQPFMMTTSNAIMEQLGLGTAFDLENLDFAGLPAGLT
                     VVAKGTPIFPRLDMEEEIAYIQAQMGGSSAISQEEEKEWNPADVELKNEKAAIKFEDF
                     DKVEIRVAEVKEVAKVEGSDKLLKFRLDAGDGQDRQILSGIAKYYPNEQELVGKKVQI
                     VANLKPRKMMGLLSQGMILSAEHDGNLTLLTVDPSVPNGSQIG"
     gene            6544..7485
                     /locus_tag="U1335_000945"
     CDS             6544..7485
                     /locus_tag="U1335_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein CoiA"
                     /protein_id="HEM5231438.1"
                     /translation="MLVALDEDGQVFNVLENPAPQGRYSCPGCGGQVRYKSGKVLRSH
                     FAHVTLRDCTYFSENESAQHLSLKSSLYKWLQGQEEVELEAYLPATKQVADILVNQQL
                     ALEVQCSSLSISRLQERTMDYQQAGMAVLWLLGKDLWLGERLTNLHKQFLYFSMNMGF
                     HLWELDDEKKELRLRYLIHEDLRGKVHCLTKAFPFGQGDLLAMLRSPFAKQALSYFTC
                     SVDQDLLDYVAKQLYYRVPKWMNLQAEAYQQGKNLLSQSLDDFYPQIRLPSSAIGFAQ
                     IKQDLTPIYQAFDRFYDKAKDKRKQILYPPIMYRRLV"
     gene            7529..8155
                     /locus_tag="U1335_000946"
     CDS             7529..8155
                     /locus_tag="U1335_000946"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231439.1"
                     /translation="MKFSRFTLVSASLLLLFSLSACAVSHEEGQTTTASSQQVQTINE
                     KEAQKFTTQHSQNVVSKEVGDDGGTLIVFEDGTEYLFTEEYYVLSYQSGCKVTYFVES
                     GDYTVATDEYEGEDKASEAKGQVGQYFVESGYSISFANDGTLLIDLQGNFTHQYDGKE
                     KKGNVKEAEGSSYVDSLLNQYGIPNLAFYDSFVKEAVADAKSYVAADE"
     gene            8228..10030
                     /gene="pepF"
                     /locus_tag="U1335_000947"
     CDS             8228..10030
                     /gene="pepF"
                     /locus_tag="U1335_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="HEM5231440.1"
                     /translation="MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFA
                     GHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKNDQDTREGKYQEFQAKAMGLYSVF
                     SQAFAFYEPEFMAITEEQLEAFKAEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
                     SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAM
                     YGTYEQFQHTYAKTLQSNVKVNNLKARLRKYDSARHASLAANFIPESVYDTLVAAVNK
                     HLPLLHRYINLRKKLLGIEDLKMYDMYTPLSDFSTKISYEDALKKCQETLEIFGEDYS
                     AIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSL
                     HSMLTRKTQPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFR
                     GTVFRQTQFAEFEQAIYKADQEGQVLTADFLNELYGQTNEKYYGLSAEENPEIQFEWA
                     RIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSLNVIAKA
                     GVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL"
     gene            10032..10475
                     /locus_tag="U1335_000948"
     CDS             10032..10475
                     /locus_tag="U1335_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231441.1"
                     /translation="MISYKRSIVIPGVISLVFILLGLGGLTRPEPSMGSVVYLIFLQP
                     LLVYLYILRKQKAVFILTKQYLEFQEHFWSERQRHSLEEIAEIRYMVSPVYRGYQSKR
                     LRIVGNKGTLLAVVNLNKLDGADFNDIYHFVEQVAPHVRWDFSNS"
     gene            10486..11034
                     /locus_tag="U1335_000949"
     CDS             10486..11034
                     /locus_tag="U1335_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231442.1"
                     /translation="MLTEEQLQDIFELADLMSNSDRELFLQLRDVVFASDPNQILDSI
                     ERILEPDSFDDFLDRVGESEKENLWLILIKLLEHFNYICVRDYKDNLEDFIYFFDRLH
                     QVRNAGISLKLDSDGLNPAASISEWARVVDSKYLDENFCLGAVDIDTDSYYLFFSKQE
                     TFVRLQELAGNLGYRIDYAKNM"
     gene            11109..11828
                     /locus_tag="U1335_000950"
     CDS             11109..11828
                     /locus_tag="U1335_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HEM5231443.1"
                     /translation="MVESYSKNANHNMRRPVVKEEIVDFMRTRQAQNTGFLKELEEFA
                     RQENIPVIPHETVAYFRLLMQTLQPKRILEIGTAIGFSALLMADNSPHSKITTIDRNE
                     EMIGFAKENFVKYDQRQQIELLEGEAMDILPTLPDDAYDFVFMDSAKSKYIVFLPEVL
                     KKVKVGGLIILDDIFQGGDVAKDIKDVRRGQRTIYKGLQRLFDATLDNPDVTASLVSM
                     SDGLLMLRKNRENVDLKHTEI"
     gene            11892..12893
                     /gene="prsA"
                     /locus_tag="U1335_000951"
     CDS             11892..12893
                     /gene="prsA"
                     /locus_tag="U1335_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PrsA"
                     /protein_id="HEM5231444.1"
                     /translation="MKQTKKILAGAVTLFAAVTLAACSNAADKDIITMKGNTITVSEF
                     YEKVKTNSQAQQVLLSMIISDVFEDQYGDKVTAKEVDEAYDKMAEQYGDSFATALSSA
                     GLTQETYKEQIRTNKLVEYAVKQAAEKELTDENYKAAYDAYTPEVTARIIKLTDEAKA
                     NEVLAAAQAEGADFAQLAKDNSTDTATKDNGGEVKFDSTSTTVPTEVQKAVFALDAGQ
                     VGASVISVVDMTTYTTSYYVVKLEAKSEKSANWEDYKDKLKEIILAQKQSDSTFVATV
                     LKEALQKANVKVKDSAFQNLLSQYVTTEESSSSSTESSSSSTESSSSTTESSSSSGQ"
     gene            13255..13740
                     /locus_tag="U1335_000952"
     CDS             13255..13740
                     /locus_tag="U1335_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000847065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LURP-one-related family protein"
                     /protein_id="HEM5231445.1"
                     /translation="MKHFQVKQRFTFGGEKFDIRDSFGELAYQVEGSFLEIPKRFIVT
                     NSRGGEVCQITKKFLTFLPQFTIDMADGHSFHLQKEFTFFKDRYTVENLGLILDGNIW
                     DLDFRLKRPDGMLVAEISKELFHLTSHYSVTVLEDSYADLVISLVVAIDYIEMMEDAS
                     N"
BASE COUNT         4194 a         2738 c         3199 g         3869 t
ORIGIN      
        1 ttatagagat attttggctc atatagagga gttgattgaa tatggaatat ctcataaacc
       61 atcgacttgg aaataacgga ggcaaccaat gaaacttcaa tttaaacagc agcaatttca
      121 gttagatgcg gtggcctctg ttgtggatgt ttttgctggt caggggaaac acagcggttt
      181 tgattaccac atggataaag gtcaaggaat ggatgcggaa ctggatatga attttatcgg
      241 ttttcgaaat gcccccatcc agctttcgca ggatactatc agccagcagg tacgaagtca
      301 gcagctccgc tatggactta aaccttcaga aaacttgtct atccaaaaag tcgatggtcg
      361 tccgtcttat aatttgacca ttgagatgga gacagggaca gggaagacct atacctatat
      421 ccgcaccttg atggagctca acaagcagta tggctggctc aagtttatca ttgtggtgcc
      481 gagcatcgcc attcgggagg gggtgctcaa gtcctttgaa atcatggcag accatttcca
      541 gatggagtat ggcaagaagc cacgctactt tgtctatgac tctagccgtt tgggagagct
      601 agacaagttc gccaattcct cggacataca ggtcatgatc atcaactccc aggcctttaa
      661 tgccactgga gcagatgccc gtcgcattca caccgagcag gaaagttttc gttggcgaaa
      721 gcccatcgat gttatcgcag cgaccaatcc gattttgatt atcgatgagc ctcagtcggt
      781 tgaggggaaa aagactaaag aacgcttgga ggatttcaag cccctattta ccctccgcta
      841 ttcagcgacc cataaggaca agcacgatat gatttatcgt ctggatgcct tggacgccta
      901 taataaaaag ctggtcaaga agattgccgt taagaccgtg gagcagactt ctaccacagg
      961 tacacaaggc tacctttatc tgcaagaact agttccgcaa aaatcaggag ctccaaaggc
     1021 tcggattgag tttgagatgc ggaccaagtc aggcgatgtc aaacgggtga ccaagctggt
     1081 tgaagagccc tttgctcttt ttgaagagtc aggtaaccta ccagcctatc aggatggttg
     1141 gactttgagc cattttgatg cgcgtgaggg tgaaaattcc attcaaatcg gtgccaatcg
     1201 caaactccat gtgggcgaag tgattgggga aaccaacgaa gatgacattc gtcgtatcca
     1261 gattcgggaa accattgcca gtcacctgca aaaagaagaa ggcctatata aacgaggcat
     1321 caaggtgctg tccctcttct tcatcgatga agttgccaag tacaagtgct acgacgagca
     1381 aaatgatgcc tacaatggca cctatgccca gatgtttgaa gaggaatatg aagcccaggt
     1441 caaggccttg ttggcagatc ccaaccacca tggcagcaac ttttggcact atctaaataa
     1501 tcatcaggaa ggtaatcccg ttcacgcagg ttatttctcc gttgataagg tgaaaaaatc
     1561 ggacaaggtc aagtttgtgg actacaaatc ggcaacggag aagagaaaca accagtccaa
     1621 cgacaaggat gcctttgatt tgattatgaa ggacaaggag cgtctgctgt cctttgatga
     1681 gccagtacgc tttatcttct cccactcagc ccttaaagaa ggctgggata atcccaatgt
     1741 cttccagatt tgtactctga aaaatacggg tacggagaca gaaaaacggc aaaagattgg
     1801 tcgtgggatg cgtcttgctg ttgaccaaaa aggtgtccgt caggatgagg aacttttagg
     1861 tgctgatgtt cataacatta acaaattgac cgtcattgcc aatgaaagct acgaggactt
     1921 tgccaagaac ttgcaaagag aactcaagga aatcttggct gatcgaccaa gcaaggtgga
     1981 agtggatctc tttgtcaaca aggtcttgga aaatgaagct ggtcaaaaac tgactgtcac
     2041 caaggaagta gctaaagaga ttgaacatca gttgattaag caagattata ttgacagcaa
     2101 gggaaatctg accaccactt actttgaaca aaaagaaaca agtcagtttg ttctatctga
     2161 gaatctggct ggctatgaag tggctgtaaa agacattttg gaatctattt acgatgtcaa
     2221 tcgttatcag attgagcgtg aaaatgattc ggaagttgtc tttgctagag aaatcaatcc
     2281 tgacaactac aaccgtcaag agtttaaacg tctgtgggaa agcattcatc acaagtccac
     2341 ctattatgtg gagtttgatg atgaggagtt gattgaaaaa tcggtcaagg ttatcaatgc
     2401 ggctctcttt gtcaaaaagc caagctatat gattacagaa gctgaggcta gggaaatgaa
     2461 ggctgagcaa ggtttggatt tcaaggtcaa taaagacggc aagcgtcagg ctgaattgga
     2521 caagtcttct attcaactac gttatgattt gctaggggaa atcgccagtc gcacagagct
     2581 gaaacgaaaa acagttgcaa ctattctgaa acagatctca ccaagcaaat ttgacatgtt
     2641 tgcctataac cctgaggcat ttatccaacg aacaagccgc ctcatcaatg aacaaaaggc
     2701 cagtcaggtg attgagcata tccgctacaa tatcttggaa gaaacctttg acacttctgt
     2761 ttttacggat aacccagaaa gcggaaaatt gtcggacaaa cggatactag aatcgcaaaa
     2821 aggcgtgtat aattatgtga aggtcgattc agatacggaa cggaagttca aagaagagtt
     2881 ggatcaattt gaagaggtta tggtctatac taagttgcca agcgaattta agatttccac
     2941 ccctttgggt gcttacaacc ctgactgggc aattgccttt cgagatggtt cggttaagca
     3001 tgtttacttt gtagccgaaa ccaagggttc catgtctagt ttgcaactga aaggggcaga
     3061 gcttgcaaaa attgagtgtg ccaaggccca cttcaaagcc ctgaaagaaa aaggtttgat
     3121 tgcggacgac cacatgtacg atgtggtgga ttcctatgaa aaattattag aaatcgtgag
     3181 gggataagca accaagcaat ccttatcaca agagaaggag aaatatatgg gagcatttct
     3241 gttttttaca tttgcgattt gttatctggt gggcattatc gccataacga ttgctttcaa
     3301 attctttcgt aggaagtagg agaaaagaca aatggaaaaa ctcttgattt ggtttttgat
     3361 tttgctctgg gcctcacctg taatcattgt cgcattggca ggtggttttg tcattttaag
     3421 tctattgttt ggcagaagga aataatgata ttgaagcatt gcaatagaat gtaacctatc
     3481 gtaaaatggt agtatatttc agatattcag gaaggggttg ctatgcctta ccgtaaatta
     3541 acatcaaaag ttcggtcttt tatcaaaggg cagacggacc gcttgctgag tgagatgaat
     3601 agcaatgcgg catatttggg gacagttcag acctatgagg cggccaaggc ccgcatgaat
     3661 caagcctatt tggctatgga gttggaagat gacccagaga aaaaggtacg actggcaaaa
     3721 ttggttgaaa cctatactgc tcaagcccag gctatattgg acgagtggga agaaaaaaac
     3781 aaacgagcag agaaaaacgc aagagatgtg aaattgattt tgtggctgac cgtgctcttc
     3841 gccctcagct ttgttttccc ggtcaatatc attctagcca ttctttttgc cgtctggttt
     3901 tatcggaatt acctgcgttc aagcagaatt gcccaagtgc ctaagtctac tgcgagccag
     3961 tcactagtga cagaagagga aagttatgaa gactggctga cagaaaagat tgttacactt
     4021 aacaaagaca agcgtgagtg gacagaggac gtacttgcaa aatatgacag tttggctgaa
     4081 atagcagcag gtattggtaa tattgacgag atagataaag aagctggtaa gaaaattctc
     4141 catcgttatc aagcaatctt agctgatatt gaaaaattac cagattctga ccagaaaacc
     4201 tattatttag attttcatcg agaaatgata gctgatttgg aaaatgtatt tgaacagctc
     4261 catattgtat aagaacaccg gaaacagttc caaactggtt ccggtttttc gctattcgtc
     4321 aattgacaag aacagaacta taattttata gagaagatag acattagctt tctactcggc
     4381 ttgtatttag aaccgctttg tgatttagct gaaaatatga taaaatagga tgttgtcaat
     4441 aacagggttt catttgccct gaatttgaaa ggaaaaaata tgacaaaaac accgttttat
     4501 atcaccacac cgatttatta tccgtctggc aagctccata ttggctcggc ctacacaact
     4561 attgcctgcg atgtcttggc tcgctacaaa cgtctcatgg ggcacgaggt tttctatctg
     4621 acagggcttg atgagcacgg gcagaagatt gaggagaagg caaaagaggc tggtttgaca
     4681 cctcaagcct atgttgacgg catggcggtt ggcgttaaag agctctggaa cttgctagac
     4741 atctcttacg acaagttcat ccgcacgacc gacgattacc acgaggaagt agtggcggct
     4801 gtttttgaaa aattgctggc gcaggacgac atttacttgg gagagtattc tggttggtac
     4861 tccgtatcag acgaggaatt tttcactgag agccaattag aagaggtctt ccgagatgaa
     4921 aacggcaagg taacaggtgg tatcgctccc agcggtcacg aggttgcctg ggtttcagaa
     4981 gaatcctact tcctccgtct cagcaagtat caggataaat tggttgagtt tttcaatgct
     5041 catccagact ttatccagcc agacggccgc ctcaatgaaa tcatgaaaaa ctttatcgag
     5101 ccaggcttgg aagatttggc agtgtcacgt acctcattta catggggtgt gcctgtaccg
     5161 tccaatccta aacacgttgt ctatgtttgg attgatgccc tactcaacta tgcgacggcc
     5221 ttgggttatg gtcaggaaga aacagccaac tacgacaagt tctggaatgg aacagtttac
     5281 cacatggttg gtaaggacat tcttcgcttc cactccattt actggccaat catgctcatg
     5341 atgttggata tgaagttgcc agaccgcttg gttgctcatg gctggtttgt catgaaagac
     5401 ggcaagatgt ccaagtctaa gggcaatgtg gtctatccag aaatgttggt ggagcgcttt
     5461 ggcttggatc cgctccgcta ttacctcatg cgtagtctgc cagtcggttc tgatggaacc
     5521 ttcacaccag aagattatgt tggtcgtatt aactacgaac tggccaacga ccttggaaac
     5581 ttgctcaacc gtacagttgc tatgattaac aagtatttcg gtggtcaggt accaactttt
     5641 gttgccaacg tgactgactt cgatgcggac ttggcggcag ttgtagctga caacttggca
     5701 agctaccaca agtatatgga agccgttgac tacccacgcg ccttggaagc ggtctggaat
     5761 atcatctccc gtaccaacaa gtacatcgat gaaactgcac cgtggatttt ggcaaaagag
     5821 gaggcagacc gtgacaagtt ggcagcggtt atggctcact tgacagcagg tcttcgtgtg
     5881 gtggctcacc tcattcaacc atttatgatg acgacgtcta atgctattat ggaacagctt
     5941 ggtttgggaa cagcatttga ccttgaaaac cttgactttg ctggtcttcc agctggtttg
     6001 actgtggttg caaaaggcac gcctatcttc ccacgtctgg atatggaaga ggaaatcgcc
     6061 tatatccaag cccaaatggg tggcagctct gctatttccc aagaggaaga aaaagagtgg
     6121 aacccagctg acgtagaact caaaaacgag aaagccgcga tcaagttcga ggactttgac
     6181 aaggtggaaa tccgcgtggc cgaagtcaag gaagtagcca aggtggaggg ctctgacaag
     6241 ttgctcaagt tccgtctgga cgcaggtgat ggccaagacc gccaaatcct gtctggtatc
     6301 gccaagtact atccaaatga gcaggagttg gtcggcaaga aagtccaaat cgttgccaac
     6361 ctcaagccgc gtaagatgat gggcttgctc agccagggca tgatcctctc agccgaacac
     6421 gacggcaatt tgacactctt aacagttgat ccatctgtgc caaacggcag ccagattggg
     6481 taaattctca acactcagca cagctgggtg tttttttgcg aactaataaa gaaaggaggt
     6541 tttatgttag tagcacttga tgaagatggg caagttttta atgtcttgga aaatcctgcg
     6601 ccgcaaggtc gctattcctg tccaggttgt ggaggacagg tccgatacaa atcaggaaaa
     6661 gttctgcgtt cgcattttgc ccatgtcact cttcgggatt gtacatactt ctccgagaat
     6721 gagtccgcac agcatctgtc acttaagtcc agtttgtata agtggttaca gggtcaggaa
     6781 gaagtagagt tagaggccta tcttcctgca accaagcagg tggcagatat cttggttaat
     6841 cagcaacttg ccctggaagt ccagtgttct agcctatcca tttcacgctt gcaggaacgg
     6901 acaatggact accaacaagc aggtatggct gttctgtggc ttctgggaaa ggatctctgg
     6961 cttggagaac ggctgaccaa tctccacaaa caatttctgt attttagtat gaatatgggt
     7021 tttcatctct gggaattgga tgacgagaag aaggagttac gacttcgcta cctcattcat
     7081 gaagatttgc ggggcaaggt gcattgtctg accaaggcct ttccctttgg tcaaggggac
     7141 ttgctggcta tgctacggtc accatttgcc aagcaagcct tgtcctattt tacttgttcg
     7201 gttgatcagg atttgctgga ctatgttgcc aagcaactct attaccgagt tcccaagtgg
     7261 atgaacttgc aggcggaggc ctaccagcaa gggaaaaact tgctcagtca gtccttggat
     7321 gacttctatc cccaaatccg tctacccagc tctgctattg gctttgccca aatcaagcaa
     7381 gacctgacac cgatttacca agcatttgat cggttttacg acaaagcaaa agataagaga
     7441 aaacaaatct tgtatccacc tataatgtat agacgacttg tgtaaataat gatataataa
     7501 aagaaaaggt ttacaaggag gtcttgttat gaaatttagt cgttttacct tagtaagtgc
     7561 ttctttgcta ctattgttta gcttatcggc ctgtgctgta agtcatgagg aggggcaaac
     7621 caccacagcc tccagtcagc aagtgcaaac tatcaatgag aaagaggctc aaaagtttac
     7681 aacccaacat agtcagaatg tagtatctaa agaagtagga gatgacggag gaacactcat
     7741 agtctttgaa gatggtacgg aatacctttt tactgaagaa tattatgtgc tttcctacca
     7801 aagtggttgt aaggtaacct atttcgtcga aagcggtgac tatactgtag cgacagatga
     7861 atacgaagga gaagacaaag caagtgaagc taaggggcag gttggacagt attttgtaga
     7921 aagtggctac tctatttctt ttgcaaatga tggcaccctc cttattgatt tacaaggaaa
     7981 tttcactcac cagtatgatg gtaaagagaa aaaaggaaat gttaaagagg cagaagggag
     8041 tagttacgtc gatagcttgt taaaccaata tggcatccct aaccttgcct tttatgacag
     8101 ttttgtcaaa gaagcagtag cagatgctaa atcctatgtt gctgctgatg agtaacttgt
     8161 aagccctcac tttccgttgg aaagtggggt atttttatgt tagaatattt tttacggagg
     8221 attaattatg tctaaacaac gttacgaaat cgaagaaaaa taccagtggg acttgaccac
     8281 cattttccca accgatgaag cctgggaggc agaacttgca gatttacaag ctgaaactga
     8341 aaaaacaaaa gaatttgcag gtcatttgct agactcagcg aagagccttt tggaaattag
     8401 tgaaacgcaa ctcggtctca tgcgccgcat tgaaaaactt tatgtttatg cgtctatgaa
     8461 aaacgaccaa gacactcgcg aaggcaaata ccaggaattt caggctaaag caatgggctt
     8521 gtattcggtt ttttcacagg cttttgcctt ctatgagcct gaatttatgg ccattactga
     8581 agagcagctg gaggccttta aggcagaaga gcctgctctt gttcagtaca gccatcaatt
     8641 tgaaaaactc ttagcagcta aggatcatgt cttgtcacag gaagtagaag aagtccttgc
     8701 ggcgaccagc gagattttcg aatcacctgc tgaaaccttc tcagtcttgg acaatgccag
     8761 cctacgtttc ccagaaatcg cagatgaaga cggtcacttg gtaccacttt cacacggaaa
     8821 ctacatccac tttatggagt ctaaaaaccg tgatgtccgt caagaagcat acgaagcaat
     8881 gtacggtacc tacgagcagt tccagcatac atacgctaag actttgcagt ctaatgtcaa
     8941 ggtcaataac ctaaaagctc gtttgcgtaa gtacgactca gcccgtcacg catcacttgc
     9001 agctaatttc attccggaat ccgtttacga tacattggtg gcggcagtca acaagcacct
     9061 tccgctcttg caccgttata tcaatttgcg taagaaactc ctaggtattg aggacttgaa
     9121 gatgtacgat atgtacacac cattgtcaga tttcagcacc aagatttctt atgaagatgc
     9181 actcaagaaa tgccaagaaa ccttggaaat ctttggtgaa gattattcgg ctattgtcaa
     9241 agaagctttt gaaaaccgct ggattgatgt ccatgtcaat gaaggaaaac gctcaggagc
     9301 atattcagga ggtgcctacg acaccaacgc cttcatgctt ctcaactggc aggataactt
     9361 ggataacatg tacaccctta tccatgaaac aggacattct cttcactcta tgttgactcg
     9421 taagacgcag ccgtatgttt atggtcatta ttcacttttc ttggctgaaa ttgcttcaac
     9481 aaccaatgaa aatcttttga cagaaaaact cttggcagaa gtagaagatg acaaggaacg
     9541 ctttgctatt ctcaaccatt acctagatgg tttccgtggt acagtcttcc gccagaccca
     9601 atttgccgag tttgaacaag ctatctataa ggcagaccag gaaggtcagg tcttgacggc
     9661 tgatttcctc aatgaattgt acggtcagac aaacgagaaa tactacggac tttctgccga
     9721 agaaaatcca gaaatccagt ttgagtgggc tcgtattcca catttctatt acaatttcta
     9781 tgtctatcag tatgcgacag gttttgcggc agcatcagct ctagcaaata agattgtcaa
     9841 tggtagccca gaagacaaag aaaactatct caactacttg aaagcaggta gctcagatta
     9901 ctccctcaat gtcatcgcta aggctggcgt agacatgacc aaggaagatt acctcaatga
     9961 tgccttcaag gtatttgaag ctcgtttgga agaattagaa gctcttgttg agaaaggtgt
    10021 gcacctctaa tatgatttcc tataaacgtt cgattgtcat tcctggtgtg attagccttg
    10081 ttttcatctt gctcggtctt ggtggtttga ccagacctga gccatctatg ggaagtgtcg
    10141 tctatttgat atttttacaa cctttgctgg tttatttata tatattgaga aaacaaaagg
    10201 ctgtttttat cttgacaaaa cagtacctag aatttcaaga acacttttgg agtgaacgcc
    10261 agcgccattc gttagaagag attgcggaga ttcgatacat ggtttctcct gtctatcgtg
    10321 gctatcagtc gaaacgtttg cgaatcgtag gaaataaggg aacactactt gcagttgtca
    10381 atttgaataa gcttgatggt gcagatttta atgatattta ccattttgta gagcaagtag
    10441 caccacatgt aagatgggat ttttcaaatt cataatggag gtattatgtt aacggaagaa
    10501 caattacagg acatttttga actggcagac ctcatgtcaa atagtgacag ggagctattt
    10561 cttcaactta gggatgtggt ttttgctagt gatccgaatc agattctaga ctctattgaa
    10621 cgcatcctag aaccagattc attcgatgat tttttggacc gtgtcgggga gtctgaaaag
    10681 gaaaatcttt ggttaatctt gataaaatta ctagagcatt ttaattatat ttgtgtgcgt
    10741 gattataagg ataatcttga agattttatc tacttttttg accgtcttca tcaagtccgc
    10801 aatgcaggga tttctctcaa attggattca gatggattaa atccagctgc ctctatttca
    10861 gaatgggcaa gagtcgttga tagcaaatat cttgatgaaa acttttgtct aggggcagta
    10921 gatatagaca cggatagtta ctatctcttt ttcagtaagc aagagacttt tgttcgactt
    10981 caagaactag ctggaaattt agggtatcga attgattacg ccaaaaatat gtaaagaaaa
    11041 ggtggggaaa cctacctttt agcgtgttga ggaagaaaat cttgtcggct tatgatataa
    11101 tggactctat ggtcgaatca tatagtaaaa acgcaaatca caatatgcgc cgtccggttg
    11161 tcaaggaaga aattgtggat tttatgcgaa cacgtcaggc gcaaaataca ggttttttga
    11221 aagaactgga agagtttgct cgtcaagaaa atattccagt tatccctcat gaaacggttg
    11281 cttatttccg cttgctgatg cagacactcc aacctaaacg tattttagaa attggaactg
    11341 ctattggctt ctctgcgtta ctgatggctg acaatagccc gcattcgaag attacaacga
    11401 ttgatcgaaa tgaagaaatg attggctttg caaaggaaaa ctttgtcaaa tatgatcagc
    11461 gccagcagat tgaattgctg gaaggggaag ccatggatat tcttccgact ttaccagatg
    11521 acgcatacga ttttgttttc atggattctg ctaaatcaaa atatattgta tttttaccag
    11581 aagtcttgaa aaaggtcaaa gtaggcggtc taatcatttt ggatgacatc ttccaaggag
    11641 gagatgttgc caaagacatc aaggatgtca gaagagggca gcgcactatt tataagggat
    11701 tgcaacgttt attcgatgcg actttggata atccagatgt gactgctagt cttgtttcca
    11761 tgagtgacgg tctccttatg ttgaggaaaa acagggaaaa tgttgactta aaacatacag
    11821 aaatttaaga agtttttaag cttttgtgtt ataatgaaag ggttaacgaa aaaaaaggag
    11881 agagacttta aatgaagcaa actaaaaaaa ttctcgcggg tgcagtaaca ctctttgctg
    11941 cggtaacgct cgctgcttgt tccaatgcag ctgataaaga tatcattacg atgaaaggta
    12001 atacgattac tgtgtctgag ttttatgaga aggtaaaaac aaactctcaa gctcaacaag
    12061 ttctattgtc aatgattatt agtgatgtat ttgaagacca gtatggtgac aaagtgactg
    12121 caaaagaagt ggatgaggct tatgacaaaa tggcagagca atatggtgat tcatttgcaa
    12181 cagctctttc ttcagctggc ttgactcaag aaacttacaa agaacaaatc cgtactaata
    12241 aattggttga gtatgctgta aaacaggctg ctgaaaagga attgactgat gagaactaca
    12301 aggcagctta tgatgcctat acaccagaag tgactgcacg tatcatcaaa ttgacagacg
    12361 aagctaaggc aaatgaagtt ttagcggcag cacaagctga aggtgcagat tttgctcaat
    12421 tggcgaagga caattctacg gatactgcta caaaagacaa tggaggcgaa gtaaaattcg
    12481 attcaacttc aacaactgtt cctacagaag ttcaaaaagc ggtctttgcc ttggatgcag
    12541 gccaagtagg ggcatccgtt atttcagtag tagatatgac aacttataca actagctact
    12601 atgttgtaaa attggaagcg aagtcagaaa aatctgccaa ctgggaagac tacaaagata
    12661 agttgaaaga gattattttg gcgcaaaagc aaagtgattc aacatttgtt gctactgtgc
    12721 taaaagaagc gctccaaaaa gcaaacgtta aggttaaaga cagtgctttc caaaatcttc
    12781 tttcacaata tgtgacaaca gaagaaagca gttcttcatc aacggaaagt agttcttcgt
    12841 cgactgaaag ctcttcttct acaacagaat cttctagttc ttcaggtcaa taattgacgt
    12901 tttacttatt aagaatagat acttgattac ttagttcaga aaattggcgg ttgttgcgag
    12961 ccatctaggc caagtatctt gctacttaat agaacaattg aatatgagaa cctgtattcg
    13021 cagtttagta cttctatcta agtctagttt ttcagctact catcgttagt ttttttcaaa
    13081 atacagtcgt attaccttaa aaactgcttt gattagcgaa atgctatctc ttatatacga
    13141 gtgcttcact tgtaaacata ggttatgaaa tgagaatgac aagtcattga atgaaggtgg
    13201 taccgcggtt tttcgccctt cgtttgattt cttgttattt ttttggaggt catcatgaag
    13261 cattttcaag taaaacagcg ctttaccttt ggtggtgaaa aatttgatat tcgtgatagc
    13321 tttggggaac ttgcttatca agtggaaggc tctttcctcg aaattccaaa acgatttatc
    13381 gtgaccaatt ccagaggtgg ggaagtttgt cagattacta agaagttttt gaccttcctg
    13441 ccccaattta ccattgatat ggcagatggt cattctttcc acttgcaaaa ggaatttact
    13501 tttttcaagg atcgctatac tgtggaaaat ctaggtttaa tcttagacgg aaatatctgg
    13561 gatttggatt ttcgcttgaa aagaccagat ggtatgctcg tagctgaaat ctccaaagaa
    13621 ctctttcatt taacttctca ttactccgtt actgtattgg aggactccta tgcagatttg
    13681 gtcatttcct tggtggttgc aattgactac atcgaaatga tggaagatgc atcgaattaa
    13741 tcgtgaaata atccttcagt ttaactggtc cgttaaattg aacccaccta actatcactt
    13801 atgaaaggaa atgttcaatt tagataattt tctgaattga acccgcccgg aaggctcgct
    13861 tctttctaat aatttttcaa aatatctaaa cgaaaggaaa gggcatcgag tttattctga
    13921 aatgaactcg ggctacggac tttgtcaaaa agagaaaccc ttcctagacg caagcgtctt
    13981 cgtcaggttt cctattttga
//
LOCUS       DASGAC010000041        13916 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.041, whole genome shotgun sequence.
ACCESSION   DASGAC010000041 DASGAC010000000
VERSION     DASGAC010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13916)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13916)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13916
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.041"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..1160)
                     /locus_tag="U1335_000953"
     CDS             complement(<1..1160)
                     /locus_tag="U1335_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012677391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
                     /protein_id="HEM5231446.1"
                     /translation="MKNKHLTLSDRNDIQIGIEQLKTFSAIAVKLGKDPSTISKEVRR
                     NRVIKENSSTSNCEACPLLKKAPYVCNACPKKRINCGYQKQFYYAKRAQLDYEAKLSD
                     SRTGVALNKEEFYRMDEIVSSAIQKGQHLNHIIASNELSASRASIYRYLEKGYLSTKP
                     IDFPRVVKFRKRRTRNLQPIPKTAKEGRSYEDFQRFLTEKGISYWLEMDTVTGRIGGK
                     VLLTFNLSFCNFIFARLLDNKTANEVAKNLYAIKNDLHQKEMDFCEIFPVILTDNGGE
                     FARVDDIEMDVRGESKLFFCDPNRSDQKGRIEKNHTLIRDILPKGSSFDNLTQEDINL
                     VCSHVNSIKRASFNGKSAYELFTFTYGEELATLLGISKIDPENVIQSPRLLD"
     gene            1444..2220
                     /gene="rpsB"
                     /locus_tag="U1335_000954"
     CDS             1444..2220
                     /gene="rpsB"
                     /locus_tag="U1335_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEM5231447.1"
                     /translation="MAVISMKQLLEAGVHFGHQTRRWNPKMAKYIFTERNGIHVIDLQ
                     QTVKLADQAYEFIRDAAANDAVILFVGTKKQAAEAVKDEAIRAGQYFINHRWLGGTLT
                     NWGTIQKRIARLKEINRMEEDGTFEVLPKKEVALLNKQRARLEKFLGGIADMPRIPDV
                     MFVVDPHKEQIAVKEAKKLGIPVVAMVDTNTDPDDIDVIIPANDDAIRAVKLITAKMA
                     DAIIEGNQGEDSVAAVEAELAAEPASTESIEELVEVVEGK"
     gene            2351..3391
                     /locus_tag="U1335_000955"
     CDS             2351..3391
                     /locus_tag="U1335_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEM5231448.1"
                     /translation="MAEITAALVKELREKSGAGVMDAKKALVETEGDIEKAIELLREK
                     GMAKAAKKADRVAAEGLTGVYVDGNVAAVVEVNAETDFVAKNAQFVELVNTTAKVIAE
                     GKPADNEAALKLAMPSGETLEEAYVNATATIGEKISFRRFALVEKTDAQAFGAYQHNG
                     GRIGVISVVEGGDETLAKQISMHIAAMKPTVLSYTELDEQFVKDELAQINHKIEQDNE
                     SRAMVDKPALPLLKYGSKAQLTDEVIAAAEEAIKAELAAEGKPEKIWDKIIPGKMDRF
                     MLDNTQVDQAYTLLAQVYIMDDSKTVEAYLNSVNASVVEFARFEVGEGIEKASNDFEA
                     EVAATMAAALGK"
     gene            complement(3960..4586)
                     /locus_tag="U1335_000956"
     CDS             complement(3960..4586)
                     /locus_tag="U1335_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family acetyltransferase"
                     /protein_id="HEM5231449.1"
                     /translation="MLDISYQANTFHISHHGRPVGNIHTYSNPYHQTNIYLRLDLVDY
                     DCTIAEQLFQSLQTFLEGKPLQVMLSSAEQERIHFLTAADFVCKRKCYEFEVTKQDYL
                     SQTGTSNLSIARKGTAPYQIACQQIFDHYQTVHQDINPWTTSQEEFEKDLPDRVYTDS
                     ENCAFVENNEIAYVCGKDEQSFDSFIQAVICQLFEQYEQISFEADDWE"
     gene            complement(4580..4924)
                     /locus_tag="U1335_000957"
     CDS             complement(4580..4924)
                     /locus_tag="U1335_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol reductase thioredoxin"
                     /protein_id="HEM5231450.1"
                     /translation="MNFQDYIQDFTSVTVEQAQSLLTAQEGSILFIGRATCPYCNRFA
                     PKLHKVAQDKQVTIHFLDSSQVSSELQTLRDHYQVPTVPGLLVAKPTGIQVRCDSSMT
                     EEEIVTFIENQC"
     gene            5194..5652
                     /locus_tag="U1335_000958"
     CDS             5194..5652
                     /locus_tag="U1335_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CtsR family transcriptional regulator"
                     /protein_id="HEM5231451.1"
                     /translation="MAMKNTSDYIEEHIKAILDQVSVAELRRSELASRFEVVPSQINY
                     VIKTRFTASRGYIVESKRGGGGYIRIGRITFSDKHELVHDLLNNMGEQLSATVYADIL
                     QLLFDEGLMTEREGNLFLSTGSDEILGKDASTIRARMMRQILRRLDRKEE"
     gene            5656..8109
                     /locus_tag="U1335_000959"
     CDS             5656..8109
                     /locus_tag="U1335_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEM5231452.1"
                     /translation="MKISTGLQRVFEDAQLVAQRYACDYLETWHVLLSFVINHDTVAG
                     AVLAEYPISISDYEHATFVVTDKVYREELDSFRILPSSKRLDETASFAKKIAEVVKAK
                     ELGTEHLFMAMLLDKRSTASQILDKVGFCFEDSDDKFRFLDLRKNLEARAGFTKEDLK
                     AIRSVMKGGKAKPTNMGQMMGMPPAPQSGGLEDYTRDLTALAREGKIEPVIGRDAEIA
                     RMIQILSRKTKNNPVLVGDAGVGKTALALGLAQRVAAGDVPVSLAKMRVLELDLMNVI
                     AGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGIDSTLDAANILKPALA
                     RGTLRTVGATTQTEYQKHIEKDAALVRRFAKVTIEEPTVEDSIAILTGLKGTFEKYHR
                     VRIGQAAVETAVTYAKRYLTSKNLPDSAIDLLDEASATVQNRVKGQAEETGLTSIDKA
                     LMDKKYKTVSKLLIKTKEDAEASQNYDLEVTEEDVLETLSRLSGIPVAKLSQSDTKKY
                     LNLEAELHKRVIGQEEAISAVSRAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTELAKA
                     LAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLL
                     FDEVEKAHPDIFNVLLQVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGF
                     GALDLSKDHKEVEKRIFEELKKAYRPEFINRIDEKVVFHSLTESHMQDVVKVMIKPLL
                     AVTAEKGITLKLQPSALKLLAKQGYDPEMGARPLRRLLQTKLEDPLAEMLLRGELPTD
                     SILKVGVKGEELKFDVVKG"
     gene            8228..8719
                     /locus_tag="U1335_000960"
     CDS             8228..8719
                     /locus_tag="U1335_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HEM5231453.1"
                     /translation="MNQTIAVVFGTFAPMHKGHLDLIERAKLACGQVCVVVSGYDRDR
                     GDRIGLDLTKRFQFAQEQFKEDDFVEVRALDETDLPPYPDGWDLWLERLLGLLDLSEH
                     QVPVFYVSEEEYAQELQNRGYQAHYSPRKFGISATLIREQPQQYQDYIAPAFLAFFGK
                     ETM"
     gene            complement(8815..9819)
                     /gene="dusB"
                     /locus_tag="U1335_000961"
     CDS             complement(8815..9819)
                     /gene="dusB"
                     /locus_tag="U1335_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HEM5231454.1"
                     /translation="MANLNTPFMIGDVEIPNRCVLAPMAGVTNSAFRTIAKEMGAGLV
                     VMEMISEKGLLYNNEKTLHMLHIDDNEYPMSIQLFGGDAEGLKRAADFIQTNTKANIV
                     DINMGCPVNKVVKNEAGAKWLKDPDKIYHIIKEVTSVLDIPLTVKMRTGWNNTDLAVE
                     NALAAESAGVSALAMHGRTREQMYTGTVDLETLTKVAGSLTKIPFIANGDIRNVQDAR
                     QRIEEVGADAVMVGRTAMGNPYIFNQINHYLETGEVLPDLSFDDKLNVAFDHLTRLTN
                     LKGESVAVREFRGLAPHYLRGSAGAAKIRGAVARAETIEQVQELFDQAREAYQERIAK
                     "
     gene            complement(9812..10678)
                     /gene="hslO"
                     /locus_tag="U1335_000962"
     CDS             complement(9812..10678)
                     /gene="hslO"
                     /locus_tag="U1335_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HEM5231455.1"
                     /translation="MDKIIKTLSKSGHFRAFVLDSTETVKTAQEKHDTMASSTVALGR
                     TLIANQILAANEKGDTKITLKILASGAVGAIISVANTKGQVKGYIQNPDLDYKRTATG
                     EVIVGPLVGNGQFLVITDYGTGHPYNSMTPLISGEIGEDFAYFLTDSQQTPSAVGLNV
                     LLDEEDKVKVAGGFLLQVLPGATEAEIARFEKRIQEMPAISSLLASENHMEALLSAIY
                     GDDDFKRLSEEEIGFVCDCSKDRFLDALASLPKADLQEMKEEDKGVDITCQFCQTHYH
                     FDENDLEELING"
     gene            complement(10758..13877)
                     /locus_tag="U1335_000963"
     CDS             complement(10758..13877)
                     /locus_tag="U1335_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5231456.1"
                     /translation="MKIRNRSLFYTVGSVAVTAGLLFSLATSPIPSVYATEVAIENYP
                     SLAITQSEVTIQGYLIAPLNSSGTAFDATNKTNLALGASMDTAASDTIPIQLKEPLRS
                     QFNLVDHPELVGKLVRITGTSDTYMKRAGIKPATAIEIVDSSSTNVQPPTSENTTTES
                     SDLVSTPIATVRSGAQGTEYTVSGKIISLVNGWGGNGFYLQGSDGAGIYIYPGAALGY
                     QPGDTVQLTGTLDEYKGELQLTTVSNHKAISEHFNAPITETNIAQLATQAQATLVSLK
                     NLTVGDIQSDSYQNATFTVTDSEGQTVDVRLDSRTGIKTADLLNHINKGDKINLTAIL
                     STYNGKIQLKPFDLSHFEVVEKATTETAPGKTETVTVGHIQGASHQSPLTNQSVILKN
                     VVVTYVTSANNFYVQDVTPDGDVKTSDGINIFTDKLKTNVKVGDLVTIAGRVEEYLGK
                     GYTERGETDLTITQIRATEVTVDGTAPVPSPIVLGLDRTIPADIIDNDGLAQFDPEQD
                     ALDFWESVEGMVVAVDDAKILGPLKNKEIYVTPATSQLPLNNVGGVNLRPEGNNTNII
                     PLLLKNGKQIVKSGDYFTGRIAGPVTYSYTNYKVYVDDSTLPTLHEGATKPETTTIIP
                     NDDKLTIASYNIENFSADSKSTSDAKVQRIAKSFVSDLHSPDIIGLIEVQDNNGATND
                     GTTDASKSAERLIAAIQAAGGPIYTYVDIAPENNKDGGQEGGNIRVGFLYNSKRVSLS
                     DKPIGTATQAVAWENGELNLSLGRIDPTNPAWAAVRKTLAAEFVFNGEKVVVLANHLN
                     SKRGDNGLYGKIQPVSFKSEEKRHILAQTIADFTKAGLAQNPNANIVMLGDFNDYEFT
                     KTIEILETGGMANLVSRHDASDRFSYFYNGNNQSLDNMLVSTNLLERYAFDMVHVNSA
                     FMEEHGRASDHDPLLVQLDVSKAQEPTQPEPSDKQTDDSGTVNNSDDNGTTNNNKPTN
                     LSTSNQTAVNADDRSAATNKGQTTVTPTAKNSQKKILPKTGEETSFVLITIGLVILSA
                     CLVKKQTES"
BASE COUNT         3697 a         2746 c         3405 g         4068 t
ORIGIN      
        1 ttatccaata atcgaggtga ttgaatgacg ttctcagggt caattttaga gattcccaaa
       61 agtgttgcca attcctcacc gtaggtaaat gtaaagagtt cataggcgga ttttccgttg
      121 aaagaagctc gtttgatgct gttgacatgc gaacaaacca ggttgatgtc ctcctgtgtc
      181 aagttgtcaa aagaacttcc tttaggaaga atatctctga taagtgtgtg attcttctca
      241 attctccctt tctgatcaga acgattgggg tcacagaaga atagcttaga ttctccacgc
      301 acatccattt cgatgtcgtc cactctggcg aattcaccgc cattatcggt cagaatgaca
      361 ggaaatattt cgcagaagtc catctctttc tgatgtaggt cattcttgat agcgtagaga
      421 tttttagcga cctcattagc tgttttatta tcaagtaatc gagcgaagat aaagttacag
      481 aaggagaggt taaaggtgag aagtaccttt ccgccgatcc gtccagtaac ggtgtccatt
      541 tccagccaat agctgattcc tttctctgtg agaaagcgtt ggaagtcctc gtaagaccgt
      601 ccttctttgg cagttttagg aatgggttgt aggtttctgg ttctccgctt tctgaatttc
      661 acgacacggg ggaaatcaat gggctttgtg gaaagatacc ctttttcaag gtatctgtag
      721 atagaagctc tggatgccga aagttcgttt gaggcgatga tatggttgag gtgttgtccc
      781 ttttggatgg ctgaagagac aatctcgtcc atacgataga attcttcctt gtttagggca
      841 acacctgttc tcgagtctga gagcttagct tcgtaatcaa gctgagctct ttttgcgtag
      901 tagaattgtt tctggtatcc acaattgatt ctctttttcg gacaggcatt acaaacgtag
      961 ggagcctttt tgagtaaagg gcaggcctca caattggagg tactagagtt ctcttttatc
     1021 actctatttc tccgaacttc ttttgaaatt gtggacgggt cttttcctag cttaacagcg
     1081 atagctgaga aggtcttgag ctgttcaatt cctatttgaa tatcattgcg atcagagagg
     1141 gttaagtgtt tgtttttcat tgtcagttac caacttgtcc catagtaagt tctaccttat
     1201 ttctttgtct cagtctaatt tccagttttt aagacagact agaacttact ttgggaattt
     1261 agcctggcag attttcatga atttctctgc tcttttactt gaaaataggg aggtattctg
     1321 atatactaat agagttgctg tgcaacaaat actcatctcg gaccaattgt ggtcttgttg
     1381 ccgaaaggtt gggctgcaag tcgaagttcg ggagaggaga aaaaacaaaa aggagaaata
     1441 ctcatggcag taatttcaat gaaacaactt cttgaggctg gtgtacactt cggtcaccaa
     1501 actcgtcgct ggaatcctaa gatggctaaa tacatcttca cagagcgtaa cggtatccac
     1561 gttatcgact tgcaacaaac tgtaaaattg gctgaccaag cttacgaatt catccgtgac
     1621 gctgcagcaa acgacgcagt tatcttgttc gtaggtacta aaaaacaagc tgctgaagct
     1681 gttaaagacg aagctatccg cgctggtcaa tacttcatca accaccgttg gttgggtgga
     1741 actcttacaa actggggtac aatccaaaaa cgtatcgctc gtttgaaaga aatcaaccgt
     1801 atggaagaag atggaacttt tgaagtgctt cctaagaaag aagtagcatt gttgaacaaa
     1861 caacgtgctc gtcttgaaaa attcttgggc ggtatcgctg acatgccacg cattccagac
     1921 gtaatgttcg tcgttgaccc acacaaagag caaatcgctg ttaaagaagc taagaaattg
     1981 ggtatcccag ttgtagcgat ggttgacaca aacacagatc cagatgatat tgatgttatc
     2041 atcccagcta acgatgacgc tatccgcgct gttaaattga ttacagctaa aatggctgac
     2101 gctatcatcg aaggcaacca aggtgaagac agcgtagcag cagttgaagc tgaattggca
     2161 gctgagccag catctacaga atcaatcgaa gaattggttg aagttgtaga aggtaaataa
     2221 aaagtaacga ggacgattta aaatctatag ggttttagct cgtgtacaat tctaaacaac
     2281 aaaaacaatc ctagaggggc agggctgagc ccgctcctct attttataaa tacaaacaag
     2341 gagaatagac atggcagaaa ttacagcagc tctcgttaaa gaattgcgtg aaaaatcagg
     2401 tgctggcgtt atggacgcga aaaaagcatt ggttgaaact gaaggtgata tcgaaaaagc
     2461 gattgaattg cttcgcgaaa aaggtatggc taaggcagct aagaaagctg accgtgtagc
     2521 agctgaaggt ttgactggtg tttatgttga tggtaacgta gcagcagttg ttgaagttaa
     2581 cgctgaaact gacttcgttg cgaaaaacgc tcaattcgtt gaattggtaa acactactgc
     2641 taaagtaatt gcagaaggta aaccagctga caacgaagca gctcttaaat tggctatgcc
     2701 ttcaggtgaa acccttgaag aagcatacgt aaacgcaact gcaacaatcg gtgagaaaat
     2761 ctcattccgt cgctttgctt tggttgaaaa aacagatgct caagcatttg gtgcatacca
     2821 acataacggc ggccgtatcg gtgttatctc agttgttgaa ggtggcgacg aaactcttgc
     2881 aaaacaaatc tcaatgcaca tcgctgcgat gaaaccaacg gttctttcgt acactgaatt
     2941 ggatgaacaa ttcgttaaag atgagttggc acaaatcaac cacaaaatcg aacaagacaa
     3001 cgaaagccgt gcaatggttg acaaaccagc attgccattg ttgaaatacg gttcaaaagc
     3061 tcaattgact gacgaagtga ttgcagcagc tgaagaagct atcaaagcag aattagcagc
     3121 agaaggcaaa ccagaaaaaa tctgggacaa aatcatccca ggtaaaatgg accgcttcat
     3181 gcttgacaac actcaagttg accaagctta cacacttctt gcacaagttt acatcatgga
     3241 cgacagcaaa acagttgaag cttacttgaa ctcagtgaat gcttcagttg tagaatttgc
     3301 tcgtttcgaa gtaggtgaag gtatcgagaa agcttcaaac gactttgaag cagaagttgc
     3361 agctacgatg gcagcagctc ttggtaaata agatataacg aagaacttcc gaatgggagt
     3421 tcttttcata ttgagagctg tacttcacga atgtgatttg ctttacaagc tgtacggctc
     3481 tttttgaggc gaacttggtt cgcactatct ccagccttca aaggttcccc aaacctttga
     3541 agcgagtact aaaggcaaac tgaaagacta ctcgacaatt caagaacttc cgaaagggag
     3601 ttcttttttg gtaaaatcgg tcttaggtct gatgtctgaa cgggtagagt gagttatact
     3661 attatcaatc ctaaatattt ttcataatct ccttaaaaag caccggccat gtggtcggtg
     3721 ctttttgcta gctttttaag atataagtat cccagctagg cttgtttggt tgttggaatt
     3781 gttcagccaa acgcatgttg gctaggctca agtccagcca cgcttctcag agttcgtgtc
     3841 aacatctcag cgcagtggtt gattggcaga tttgttcgtg tttcacactc caaacctaac
     3901 ctaatcaact gtgcgggggt gagaagacga actctttttt agaccggtcg agttctttct
     3961 cactcccagt catcagcctc aaagctaatt tgctcatact gttcaaatag ttggcaaata
     4021 actgcttgga tgaaggaatc aaagctttgt tcatcttttc cgcatacgta ggcaatttca
     4081 ttgttttcta cgaaggcaca attttctgag tctgtataaa ctcggtcagg taagtccttc
     4141 tcgaattctt cttgactggt agtccaagga ttgatgtctt gatggactgt ttgatagtgg
     4201 tcaaaaattt gctgacaggc tatttgataa ggtgcggtgc ctttgcgggc tatgcttaag
     4261 ttggaagtgc ctgtttgact gagataatct tgtttggtca cttcaaattc gtaacatttt
     4321 cgtttgcaga caaagtcagc tgcggtgagg aaatggattc tttcctgctc tgcagaggag
     4381 agcataacct gcagaggctt accttctaag aaagtctgta gggactggaa gagttgctct
     4441 gctatggtgc aatcataatc aaccaaatct agtcgtagat agatattggt ctggtggtag
     4501 gggttgctat aggtatggat gttgccgact ggtcttccgt gatgagatat gtggaaggtg
     4561 ttggcttggt aggaaatgtc tagcattggt tctcaataaa agtcacaatt tcttcttccg
     4621 tcatgctgga gtcgcagcgg acttggatgc cagtaggttt agcgacgagg agacctggga
     4681 cggtaggaac ttggtagtgg tcgcgaaggg tctggagttc agagctgact tggctggagt
     4741 cgaggaagtg gatggtcact tgcttgtctt gggctacctt gtggagtttt ggtgcaaagc
     4801 ggttgcagta aggacaggtt gctcgtccga tgaagagaat gctgccctct tgagcagtta
     4861 gcaggctctg tgcctgctcc acagtcacac ttgtaaagtc ttgaatgtaa tcttgaaagt
     4921 tcatggtata agatataaag ggccttaagt ggacacagaa aaaataggaa acagaacgac
     4981 gactagttct cgtttatctt tttggcctag tccgtagccc gtattcagtt caactaaata
     5041 cggaagccct agtcctttct gttttttctt ttattatagg ataaagcaga gcagatttca
     5101 aaattctgct acgctagttg ctaggctttt gctttcaaaa ttcgtcattt taaggtataa
     5161 tggtcaaaga tagtcaaaga aagaggcgat actatggcga tgaagaatac atcggattat
     5221 atagaagagc acatcaaagc catcttggac caagtcagtg tagctgagtt gcgtcgaagt
     5281 gaattggcta gtcggtttga agtggtgcca agtcagatta actacgtcat taaaacccgt
     5341 tttacagcca gccgtggcta tattgttgag agtaagcgtg gtggtggtgg ttatatccga
     5401 attgggcgga ttaccttttc ggataagcac gaactggtcc atgatttgtt aaacaatatg
     5461 ggtgagcagt tgtctgcgac ggtttatgcg gatattttac agctcctttt tgatgaagga
     5521 ttgatgacag aacgagaagg caatctcttt ttgtccacag gatctgatga aatattagga
     5581 aaagatgcaa gtactattcg agcacgcatg atgcgtcaaa tactacgacg tttagatagg
     5641 aaagaggaat aattcatgaa aatttcaact ggtttacagc gggtttttga agatgcccag
     5701 ttagtggccc aacgttatgc ctgtgattac ttggaaacct ggcatgttct cttgtctttc
     5761 gttatcaacc atgatacagt cgctggcgct gttttggcag aatatcctat ttcaatttct
     5821 gactatgaac atgcaacttt tgttgtgacc gacaaggtct atcgtgaaga gttggatagt
     5881 tttcgtattt taccatcttc taaacgtttg gatgaaacag ctagttttgc caagaaaatt
     5941 gcagaagtcg tcaaggctaa ggagctggga acggaacatt tgtttatggc tatgttgttg
     6001 gacaagcggt caacagctag tcagattttg gacaaggtag gtttttgttt tgaagactca
     6061 gatgataagt ttcgtttctt ggatttgcgt aaaaacttgg aggcacgtgc gggatttacc
     6121 aaagaggacc ttaaagctat ccgcagtgtg atgaagggtg gcaaagccaa acctaccaat
     6181 atgggacaga tgatgggaat gcccccagca cctcaaagtg gtggcttaga ggactacact
     6241 cgtgatttga cagctttggc gcgtgaaggg aagattgaac ctgtcatcgg tcgagacgct
     6301 gagattgcac ggatgatcca aattctatca cgtaaaacca agaataaccc agttctagtt
     6361 ggtgatgctg gtgtcggaaa aactgcgctt gctttgggtc ttgctcaacg tgttgctgca
     6421 ggtgatgtcc ctgtcagctt ggctaagatg cgggttttgg aacttgactt gatgaacgtt
     6481 atcgctggaa ctcgtttccg tggtgatttc gaagagcgga tgaataatat catcaacgac
     6541 atcgaggaag atggtcaggt catccttttc atcgatgagt tgcataccat tatgggttct
     6601 ggctcgggga ttgattcgac cttggatgca gccaatatcc tcaaaccagc tcttgctcgt
     6661 ggcaccctcc gtacggtcgg agcgacgact cagacagagt accaaaagca tattgagaaa
     6721 gacgcagcct tggttcgccg ttttgccaaa gtgaccattg aagagccgac agtggaagat
     6781 agcattgcca ttttgacagg gcttaaaggt acttttgaga aataccacag ggtccgtatt
     6841 ggacaagcag ctgtagagac tgctgtgacc tacgctaaac ggtatttgac cagtaaaaac
     6901 ctgccagatt cagccattga tctgctggat gaagccagtg caacggtaca aaatcgagtg
     6961 aaagggcagg ctgaggaaac aggactgacg agcatagaca aggccttgat ggataaaaaa
     7021 tataagactg tcagcaagct tttgattaaa acgaaagaag atgccgaggc tagtcaaaac
     7081 tatgaccttg aagtaacaga agaagatgtt ttagaaacac ttagccgctt gtcaggtatc
     7141 ccagtagcca agcttagcca atcagatact aagaagtatc tgaatctgga agcagaattg
     7201 cacaagcgtg tgattggcca agaagaagcg atttctgcag ttagcagagc tattcgccgt
     7261 aatcagtcag ggattcgtac aggtcgcaga ccgattggtt cctttatgtt cttgggacca
     7321 actggtgtcg gtaagacaga gcttgctaaa gccttggcag aggttctctt tgatgatgaa
     7381 tctgctctta tccgttttga tatgtctgaa tacatggaga aattcgcagc cagccgtcta
     7441 aatggtgccc ctccaggcta tgttggctat gaagagggtg gcgaattgac ggagaaagtc
     7501 cgcaacaaac cttattctgt tcttctcttt gacgaggtag agaaagctca tccagatatt
     7561 ttcaatgtgc tcttgcaggt cttagatgat ggtgtcttaa cagacagtaa gggacgcaag
     7621 gtggatttct ccaataccat cattatcatg acgtctaacc ttggagcaac agcccttcgt
     7681 gatgataaga cagttggttt tggtgccctt gatttgtcta aggaccacaa ggaagtggag
     7741 aagcgcattt ttgaggaatt gaaaaaagcc tatcgtccag aatttatcaa ccgtattgac
     7801 gagaaagttg tcttccatag cttgacagaa tcccatatgc aggatgttgt caaggtcatg
     7861 attaaacctt tattggctgt aacagctgag aaaggaatta cccttaaact gcaaccgtca
     7921 gcccttaagt tattggctaa acaaggttac gacccagaaa tgggggctcg tcctcttcgt
     7981 agactcttgc agaccaagtt ggaagatcca ttggcagaaa tgttactccg tggggagttg
     8041 ccaactgatt caatcttgaa ggttggggtc aagggtgaag agctcaagtt tgatgtggta
     8101 aagggataag gagtgcttgt tgttgctatc ctttccagat gcagaattat tcttccgttt
     8161 taaaaaaagg atgaaatagt tgaagaggtg agcttgctcg cctctttagc aagtagaaag
     8221 gaaatctatg aatcaaacca tagctgttgt tttcggaact tttgccccca tgcacaaggg
     8281 acatttggat ttgatcgagc gagcaaagtt ggcctgtggt caggtttgtg tggtggtttc
     8341 aggctatgat agggatcgtg gggataggat aggtttagac ctgaccaaac gatttcaatt
     8401 tgctcaagag cagtttaagg aagatgattt tgtcgaagtt cgtgccctgg atgaaacgga
     8461 cttacctccc tatccagatg gctgggacct ttggttagaa cgcctgcttg gtttattgga
     8521 cttgtcagaa catcaagtac cagttttcta tgtgtctgag gaagaatacg ctcaggaact
     8581 gcaaaatcga ggctatcaag ctcattatag tcctagaaaa tttggtattt cagcgaccct
     8641 cattcgtgaa caacctcaac aatatcagga ttacattgct cctgcctttc ttgccttttt
     8701 tggaaaggaa actatgtaaa acagtataga aaaaacgcat aaaatcaggt cctaaccttg
     8761 gttttatgcg tttttctgtt tcattgttag cgagttttaa cctgccagtt tatcttattt
     8821 agcaatccgt tcttgatagg cttctcgtgc ttggtcaaag agttcttgga cctgctcgat
     8881 agtctctgct cgggcaacgg cgccacgaat cttggcagca cctgctgagc cacggagata
     8941 gtggggagct aggccacgga attcgcggac ggcaactgac tcgcctttaa gattggtcaa
     9001 tcgggtcagg tggtcgaagg cgacattgag tttgtcatcg aaggagaggt cggggaggac
     9061 ttctcctgtt tcaagatagt ggttgatttg gttgaagatg taaggatttc ccatagcagt
     9121 ccgtccgacc atgacagcat cagcaccgac ttcctcgatt cgctggcggg catcttggac
     9181 attacggatg tcgccgtttg cgatgaaggg aatcttggtc aggctgccag ctaccttggt
     9241 caaggtctct aggtcaacag ttcctgtgta catctgctcg cgggtccgtc cgtgcatggc
     9301 cagggcagac acaccggcac tttctgcggc cagggcattt tcgaccgcca ggtcggtatt
     9361 gttccaaccc gtccgcattt taacagtcaa gggaatatcg aggactgagg tcacttcctt
     9421 gatgatgtgg taaatcttgt cggggtcctt gagccactta gcaccagctt cgtttttaac
     9481 gaccttgttg acagggcagc ccatgttaat atctacgata ttagctttgg tgttggtttg
     9541 aatgaagtcg gcagcccgtt tcagtccttc ggcgtcgcca ccaaaaagct ggatggacat
     9601 agggtattcg ttgtcgtcga tatggagcat gtggagggtc ttctcgttgt tgtagagaag
     9661 gcctttttca gaaatcattt ccataacgac cagacctgcg cccatttctt tggcaatggt
     9721 acggaaggcc gagttggtca cgccagccat tggggccagt acgcagcgat tggggatttc
     9781 tacatcacca atcataaaag gggtattgag attagccatt gatgagttcc tccaaatcgt
     9841 tttcgtcaaa gtggtaatgg gtctggcaga attgacaggt gatgtccaca cctttgtctt
     9901 cttccttcat ctcttgcagg tccgcttttg gcaagcttgc tagagcatcg aggaagcggt
     9961 ctttagagca gtcgcagaca aaaccgattt cttcttctga caggcgtttg aagtcgtcgt
    10021 cgccataaat ggcggatagc agagcttcca tgtggttttc agaagccagc aagcttgaaa
    10081 tggcaggcat ttcttggatg cgtttctcga aacgggcaat ttcagcctcg gtcgctccag
    10141 gtaaaacttg gagtaagaag ccaccggcta ccttgacctt atcttcttca tccaacaaga
    10201 cattgagccc caccgcagat ggggtctgct ggctgtccgt taggaagtag gcaaagtctt
    10261 caccgatttc accagagatt aagggggtca tggaattgta aggatgccct gttccgtagt
    10321 ctgtgatgac caggaattga ccattgccta caagtggtcc aacgataact tcgccagtcg
    10381 ctgtccgttt gtagtctaag tcaggatttt gaatgtagcc cttgacctga cctttggtat
    10441 tggcaacgga gatgatagcc ccaacagcac cgctggccaa tattttcagg gtgatcttgg
    10501 tatcaccttt ttcattggca gccaaaatct gattggcaat gagagtgcgg cccagagcaa
    10561 cggtggacga cgccatggta tcgtgttttt cttgggctgt tttcacggtt tctgtgctat
    10621 ccagcacaaa ggcacggaaa tgcccacttt ttgatagtgt tttaataatt ttatccataa
    10681 ctttaattat agcacaagtg gaggtggagc agtagaaaaa tgagcctgaa agtcatgctt
    10741 tcaagctcaa aaaatgatta ggattctgtt tgttttttga caaggcaggc gctcaagatt
    10801 acgagaccga ttgtgataag tacaaagctt gtttcttctc ctgtctttgg aaggattttc
    10861 ttttgactgt ttttggcagt aggggtcacg gttgtttgtc ccttgtttgt agcggcagaa
    10921 cggtcatcag catttacagc tgtttgatta gaagttgaaa gatttgttgg cttgttattg
    10981 ttggtcgtac cattgtcatc actattgttg actgttcctg agtcatctgt ctgcttgtcg
    11041 cttggttctg gttgagttgg ttcttgtgcc tttgacacat ccagttgtac caatagtgga
    11101 tcgtggtcag aagctctgcc atgttcttcc ataaaggctg aattgacatg gaccatatca
    11161 aaggcatagc gctccaacaa gttagttgat actagcatat tgtcaagaga ctgattgttc
    11221 ccgttataga agtaagagaa gcgatcggat gcatcgtgac gactaacgag gttagccatt
    11281 cctcctgttt ctaaaatttc tatggtttta gtaaattcat agtcattgaa gtcgcctagc
    11341 ataacgatat tagcatttgg attttgagct aagcctgctt ttgtaaagtc agcgatagtt
    11401 tgtgctagta tgtggcgttt ttcttcggac ttgaagctga caggttggat ttttccatag
    11461 agaccattgt caccgcgttt tgagttgaga tggttggcaa ggacaacgac tttctcgccg
    11521 ttgaagacga attcagctgc aagtgttttg cggacagctg cccaagcagg gttggttggg
    11581 tcgattcggc ccaggctgag attgagttcg ccgttttccc atgcaactgc ctgtgttgcg
    11641 gtaccgattg gtttgtcaga taggctgaca cgttttgagt tgtagaggaa gccgacgcga
    11701 atattgcctc cctcttgtcc gccgtctttg ttgttttcag gagcaatatc cacataggta
    11761 tagattggtc cgccggctgc ttgaatggct gcaattaggc gctcagcact cttactagca
    11821 tcagttgtgc cgtcatttgt agcaccgttg ttgtcctgca cttcaatcaa tccgataata
    11881 tctggagaat gtaggtctga aacaaaggat ttggcaatgc gttggacttt agcgtctgat
    11941 gttgacttac tgtcagcaga aaagttttca atgttataag aagcgatagt cagcttgtca
    12001 tcatttggga taatagttgt tgtttctggt tttgtagctc cttcgtgcaa ggttggaagg
    12061 gtgctatcat ctacatagac tttataattg gtgtaagagt aggtaactgg tccagcgata
    12121 cgaccggtga aatagtctcc tgatttgacg atctgttttc catttttcaa caggagtgga
    12181 atgatattgg tattattccc ttcagggcga aggttgacgc ctccaacatt atttaaagga
    12241 agttgactag tggcaggagt gacatagatt tccttatttt ttagtgggcc aaggattttt
    12301 gcatcatcca cggcaaccac cataccttca acggattccc agaaatcgag cgcatcttgt
    12361 tctggatcaa attgagccaa accgtcgttg tcaataatat ctgctgggat ggtccgatca
    12421 agaccaagga ctatgggaga tggtacaggt gcagtcccat ccacagttac ttcagtagct
    12481 cgaatttgtg tgatggttaa gtctgtttcc ccacgttctg tataaccttt tccgaggtat
    12541 tcttctacac gtcctgcgat agtgacaaga tctcctacct tgacatttgt ttttaatttg
    12601 tcagtaaaaa tattaatacc gtcagatgtt ttgacgtctc catctggtgt gacatcttgc
    12661 acgtagaagt tattggcaga ggtaacgtag gttactacga cgtttttaag aatcacagat
    12721 tgattggtta aaggtgattg gtgacttgca ccttgaatgt gaccgactgt tacagtttcg
    12781 gtcttgccag gtgctgtttc tgttgttgcc ttttcaacga cttcaaaatg agagaggtca
    12841 aatggtttta attgtatttt tccattatag gtggataaaa tagcggttag attaatctta
    12901 tctcccttgt tgatatggtt caaaagatca gctgttttga tacctgttcg actatctaaa
    12961 cgcacatcca cagtttgtcc ttcggaatca gttacggtaa aggtagcatt ttgatagcta
    13021 tcgctttgaa tatctccgac agtcaagttt tttagagaaa ctagtgttgc ctgtgcttgc
    13081 gttgctaact gagcgatatt tgtttctgta atgggagcgt tgaaatgctc agatatagcc
    13141 ttgtggttgc taactgtggt tagttggagt tcgcctttat actcatccaa tgttcctgtt
    13201 aattgaacgg tatcaccagg ctgatagccc aaggcagccc ctgggtagat atagatacca
    13261 gcaccgtcag aaccctggag gtaaaaacca tttcctcccc aaccgtttac taggctaatg
    13321 attttaccag aaacggtgta ctctgttcct tgtgcaccag agcgaacagt agcaatcggt
    13381 gtagaaacaa ggtcgcttga ctcggtagtc gtattttcac tggttggtgg ctgaacatta
    13441 gtagaagatg aatctacgat ttcaatcgct gtagctggtt tgattccagc tcgcttcatg
    13501 tatgtatcgc tagttcctgt gatgcgaacc aattttccga ctagttcggg atgatcaacg
    13561 aggttgaatt ggctgcgaag aggttctttt agttgaatag ggatagtgtc ggatgccgca
    13621 gtatccatgc ttgcgccaag ggctagattt gttttgttag tagcgtcaaa agcggttccg
    13681 ctactattaa gtggtgcaat aagatagcct tgtatcgtga cttccgactg ggttattgca
    13741 agtgacggat aattctctat cgccacttca gtagcgtaca cagatggtat aggcgaagtg
    13801 gcaagactaa acaagagtcc ggctgttacc gctacagaac ctacggtata gaagagagaa
    13861 cggtttctaa tcttcatata aaactccttt ttgttatata tggacgttat caaaac
//
LOCUS       DASGAC010000042        13864 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.042, whole genome shotgun sequence.
ACCESSION   DASGAC010000042 DASGAC010000000
VERSION     DASGAC010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13864)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13864)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13864
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.042"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            65..364
                     /locus_tag="U1335_000964"
     CDS             65..364
                     /locus_tag="U1335_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008808250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEM5231457.1"
                     /translation="MMNMQNMMRQAQKLQKQMEKSQAELAATQFTGSSVQDLVTATFT
                     GDKKLVSIDFKADVVDADDLETLQEMTIQAVNAALTKVDEATQKKLGAFAGKLPF"
     gene            complement(408..2174)
                     /locus_tag="U1335_000965"
     CDS             complement(408..2174)
                     /locus_tag="U1335_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEM5231458.1"
                     /translation="MKKIQREFQKIYYNLDKILLLFFTLFTFMEFVWIPLNSWISEGL
                     LAMTGHAYLSPTNLLSVFAENPLVTGLFILLFFVNIAIAYLELALLFTGVWQLLDEKV
                     KHLPDYLRDVRDSMVAIIRHSSLPKVLFLLFYSVILLPSLRRVLNIYYFNKIVVPQFI
                     VDYLSNTVWLGILILFFLLLFFWLASRFMYALPNIYFEHRSVKESIAYSWKKTRGRKQ
                     VSSFFRLIWLVTFPVLLFTGIGILLYLVQLVAEPYLPDTGPSYWLAVVCYAILKLAYY
                     GVVALFMMGFVSLLTGKQLPNYRRKRLRHRLRLAILLVSGLVFGTQGALALYYPFDTL
                     PVTISHRGVDNGNAVQNSIEALEKTSQLKPDYIEMDVQETKDGQFIVMHDTDLLALTG
                     NPGGTHDYTLAELTGMTASENGMAAPVPSFDEYLEKADELGQKLLVEIKVTKADSPKL
                     TQNFLKKYGQRLIAKGHQMQSLDYRTIIEIKQYSEKLVSFFILPFNSIYPTTVADGYT
                     MEYTSLDQNFMVKSWIRGKSVYAWTPNEEESMTKMLLLQVDGIITDNMTDLQSLMEEM
                     KENRRYPDLFFLQFQSLIYNFE"
     gene            2254..2802
                     /locus_tag="U1335_000966"
     CDS             2254..2802
                     /locus_tag="U1335_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5231459.1"
                     /translation="MIRIAPMTEDYLHTLWKIGHREAAPRWKEFAAPYFDDYQACATF
                     EDFQALELYQWLQKDCVRAILVDQLPIGFVSYYWECQSTRWLEIGIEIYDDKVWGKGY
                     GTAALQLWIDTIFQQFTELEHIGLTTWSGNKGMMRTAEKLGMTKEAHIRKVRYWQGHY
                     HDSIKYGILREEWVENKKKSSS"
     gene            complement(2823..3317)
                     /locus_tag="U1335_000967"
     CDS             complement(2823..3317)
                     /locus_tag="U1335_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF536 domain-containing protein"
                     /protein_id="HEM5231460.1"
                     /translation="MGIEKTVSELAEILGVSRQAMNNRVKSLPEEFVDKNDKGVTVVN
                     RAGLIKLEEIYKTTIFEDEPISDEVKHRELMEILVDEKNAEIIRLYSQLKAKDKQLAE
                     KDEQLKVKDVQIAEKDKQLDQQQQLTLKAMADKEVLKLELDEVKAQAEEVQAKGFFAR
                     LFGR"
     gene            complement(3430..3807)
                     /locus_tag="U1335_000968"
                     /pseudo
     CDS             complement(3430..3807)
                     /locus_tag="U1335_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612380.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
     gene            4166..5341
                     /locus_tag="U1335_000969"
     CDS             4166..5341
                     /locus_tag="U1335_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM5231461.1"
                     /translation="MNTVDTIIIGAGPAGMMAAISSSFYGKKTLLLEKNKRLGKKLSG
                     TGGGRCNVTNNGTLEDLLAGIPGNGRFLYSVFSQFDNHDIMNFFQENGVKLKVEDHGR
                     VFPTTDRSQTIIKCLEMKMLENGVDIRTGTEVVSVRKMDDIFHVKTSEETFTAPQLIV
                     TTGGKTYPSTGSTGFGHDIARHFKLAVTEIEAAESPVLTDFPHKKLQGISLDDVTLTY
                     DKHVITHDLLFTHFGLSGPAALRLSSFVKGGETAFLDALPTHSEQDLLEHLEKNREKS
                     VKNALRELMPDRLADFFAENYDCKVKQVSPKNLVQLVSLLKALPIKITGKMSLAKSFV
                     TKGGVDLKEINPKTLESKKIPGLHFAGEVLDINAHTGGFNITYCLATGWVAGSSYSS"
     gene            5582..6274
                     /locus_tag="U1335_000970"
     CDS             5582..6274
                     /locus_tag="U1335_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5231462.1"
                     /translation="MPINSFGQEIGLPLPHYSSGERPSLETIQGHTVRLEKLSLYHAD
                     DLYQFYGPSAKKADWTYLPIEPLADRDSFQAYFQKMMASFDPYYLAIVDKATNQAVGT
                     FALMRIDTNHRTIEVGWVIFSHQLQRTRQATEAHYLLMNYVFEELGYRRYEWKCDSLN
                     QASRAAANRLAFTYEGTFRQALVYKGRNRDTAWFSLLDHEWPDRKHALENWLKDCNFD
                     GQGQQKQSLSSF"
     gene            6356..7054
                     /locus_tag="U1335_000971"
     CDS             6356..7054
                     /locus_tag="U1335_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231463.1"
                     /translation="MQLKLSSVSKKFDHKIILEEASFSFEQGKIYGLLGRNGAGKTTL
                     FNCIARNLTLDGGSIQFVKDENAFDYDNTDIGFTQTYPQLPAFMTAYEFVRFYMDIHK
                     DKLKSPRSPEEWLNLVGIGEEDQHRLLKDFSHGMQNKVQLLLSLIVQPPVLLLDEPLT
                     SFDPVAAHEFKQLIREAKKDSVIIFSTHILQLAQDLCDEIVLLHHQELQAVPSDKLHD
                     PDFEQEVVALLTAD"
     gene            7064..8689
                     /locus_tag="U1335_000972"
     CDS             7064..8689
                     /locus_tag="U1335_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231464.1"
                     /translation="MKTILRYFWYQEKYNLYRTVNGFFYYLRKLPLVGQSIPESIFKS
                     YSFKSGLFLVLHILSIPSRFLVKGIWLTLNFYLASFWINILSGEEFNFWNIIPETWLL
                     GFSIWMTFVSYIYRFGKGFEPFITKSEREFMQNFGLSQSSFLQSQLFVEPIITSLSYL
                     PALLIFSSLSGNWLYLPLGLLTIPAGSFTGQALNRWFFNRRILSRRNSWQSWVILGTG
                     LAVIACLILFRNHLSHIFLLPVLVCQILLIWFGYGYLKQQTNHLDYLQYCMDQSLQMD
                     KKIFELTKGNEYTRQGLQMQAKLSIKKGKDLSHLSGMTYLNALLFDRYRSVLAKKLHF
                     RLGCLLAIVLFIEGIRWFSKEDIQISNANYIEGLPFAFMVMYVASMGKAVAQMVFVNC
                     DISMLHYPFYREAKTIIAGFHYRFLQTVKLNAAFSGSLLLALIIFTRAQLPIETYLLT
                     ALLLLSLTALFSFHDLFIYYILQPFTKDMEVVNPVYKFLSGVLYWVAYLNIKLDLGSH
                     LYILLISIAMIAYVSIGYWILLKKAPQTFRLKS"
     gene            complement(8828..9850)
                     /locus_tag="U1335_000973"
     CDS             complement(8828..9850)
                     /locus_tag="U1335_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family putative sulfate export transporter"
                     /protein_id="HEM5231465.1"
                     /translation="MVKKNARGVALCLVLAGISWCLGSWFSLVGGPVFALLIGMSLHS
                     YVARENAFQPGLTFTSKKVLQYAVICLGFGLNLTAVLAVGRQSLPIILSTISFALFLA
                     FLMWKWLPISSHLATLIGVGTSICGGSAIAATAPVIQADDEDVAQAISVIFLFNVLAA
                     LIFPTLATWLGFSTDSGQAFGMFAGTAVNDTSSVTATAATWDSLYGLGSQTLDTAVTV
                     KLTRTLAIIPITSVLAIWQARGKGVQADKQSLLAGFPTFILYFILASLVTTMAGRFGL
                     GTDFFAPLKTLSKFLICMAMAAIGLRTNVLALVKNGRAALLVGLICWLGVTVLTLVWQ
                     AILGIW"
     gene            complement(9860..10183)
                     /locus_tag="U1335_000974"
     CDS             complement(9860..10183)
                     /locus_tag="U1335_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HEM5231466.1"
                     /translation="MIKTSVLLIILASALVTWLPRVLPFVLTQNKSLPPKLVKFLSFL
                     PITIIFALTLSSIMDEEVGSFPSLLPVESLALIPTFLVVLRTKNILLAVVVGVLTTAA
                     LRLIF"
     gene            complement(10170..10871)
                     /locus_tag="U1335_000975"
     CDS             complement(10170..10871)
                     /locus_tag="U1335_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HEM5231467.1"
                     /translation="MKEQDFLEGLRDAIPTALGYASIGLACGVVSVNSGISVVEMALM
                     SLLVYAGSAQFVICAMILAGTPLVSIAVTVFFVNLRNFLMCLHTTTIFQGNSLGSNIL
                     IGSFVTDESYAVLLRKHIEEKQIAPSWMYGNNFASYASWVTFTILGNLIGGLIPNPEQ
                     FGLDFALVAMFVGIFSGQLEAMARTIPLKKIGLILLAVGLAYVGLSVLVSSYVAVLLA
                     TLLGCFVGVMIDDKN"
     gene            complement(11102..>13864)
                     /locus_tag="U1335_000976"
     CDS             complement(11102..>13864)
                     /locus_tag="U1335_000976"
                     /inference="COORDINATES: protein motif:HMM:NF019202.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1542 domain-containing protein"
                     /protein_id="HEM5231468.1"
                     /translation="LDAKNKIAKDVEAAEDAINSNPNLSKEEKDAAIQAVADEAKKAN
                     GEIDKATTPDAAQAAEEAGTKAIAADVLDAAKLDAKNKIAKDLATVEAAIDANSNLTK
                     EEKDAAKLAAQAKAAEAVANIEKATTPEAVQALEDAAVKDLANIEIKAAYDDAVKAIE
                     AADNLSTAAKTQALEDLKKARQAAEEVVKNATTADEVAKGALDGLKSIAKVEAKAAAD
                     DAKEAIAKNSNLTADEKKVYTDAIDAALKETEAKITNATDADTVDAETVLAQKEIAKQ
                     EVAAATADAVEGIEANANLTPEEKAEYKANVAKAAADAEKAITEATTAADIQSKTFDA
                     TQAAAKEEVKADAADAVKGIQANDNLSEAEKTAAKEAVEKARDTTLENIEKAKTAADV
                     ETATLDAEKANAKAELKAAADDAKKAIDENTNLPESEKTALKLAIDAEVAAANLEIDN
                     AKTAEDIDVATLATEKTIAKTEVKAAAEDALRSIDENANLTDDEKAKAKADVYVELSK
                     AEKAIDKADTADAIDNATLVGEKAVAKEELKAAADDAKKAIEENTHLTDAEKQAAKDA
                     VDAELAKANDAIDAATKADEVDVATLAGEKAVAKEALKAAAEDAKKAIDAAKQGAKNK
                     LMEEADKAKAAIDANPNLTPEEKAAAKAEIDKAVEEAIISINGAGTHHALGEIKLPLS
                     ALIKPVVTVTPVLDPNNLTEEEIARIKALLEENNTFPEGTEIIVSKDASVSIKYPDGT
                     IDLVLPAEIVKQADTTAPAITDDAKGNIVVAPTKEAVEFVVTYVDNNGKAQLVIVTKG
                     ADGKWTTTAKAVIVDPVTGQVIIPGSAIKPGTVVTAYSKDMAGNVSDLNSAEVEAVDA
                     NNPAAGVKVKSVTSTSNANKSTKKAKQLPNTGEKATSATSLGLAVLGMGLALFAAKRK
                     KDEEEA"
BASE COUNT         3728 a         3322 c         2799 g         4015 t
ORIGIN      
        1 taaggtaagg aaaaattaca aacaaggtct aatcccttgg tacgaaagga atcttaaaaa
       61 tcttatgatg aacatgcaaa acatgatgcg ccaagctcaa aaacttcaaa aacaaatgga
      121 gaagagtcaa gctgagttgg ctgctactca atttactggt agctctgtac aggacttggt
      181 tactgctact tttactggag ataagaaatt ggtttctatc gacttcaagg ctgatgttgt
      241 ggatgcagac gaccttgaaa ccttgcaaga aatgacaatc caagccgtca acgctgcact
      301 tacaaaagtt gacgaggcaa ctcagaaaaa actaggtgcc tttgcaggta aattaccatt
      361 ttaagacaga aaagacgcga ttgggccagg ccctcgcgtc tctttgttta ttcaaaatta
      421 taaatcaaag actgaaattg caggaaaaag aggtctggat aacgtcgatt ctctttcatt
      481 tcctccatca gactttggag gtcggtcatg ttgtcagtga tgataccatc cacttgtagc
      541 agcaacatct tggtcatact ctcttcttca ttcggtgtcc aagcataaac tgacttccca
      601 cgaatccaag attttaccat aaagttttga tcaagcgagg tatactccat agtatagccg
      661 tcagcaaccg tcgtcggata gatagagttg aacggaagaa taaagaagga tactaatttc
      721 tcgctatact gctttatttc gataatagta cggtagtcta atgattgcat ctggtgtcct
      781 ttggcaatca aacgttgacc gtattttttt aagaaattct gggtaagttt tggcgaatct
      841 gccttggtca ctttaatttc taccaataat ttctgtccca gctcatccgc tttttcaaga
      901 tattcatcaa aagaaggaac tggagctgcc atgccgtttt ctgatgcagt catccctgtc
      961 aactctgcaa gagtatagtc atgtgtacct ccgggattgc ccgtcaaagc caataaatcc
     1021 gtatcatgca tgacaataaa ctgaccatcc ttcgtctcct gaacatccat ctcaatataa
     1081 tctggcttga gctgagaggt tttctctagg gcctcgatag agttctggac agcattgcca
     1141 ttgtcaacac cgcgatggga aatggtaact ggcagggtat cgaagggata gtagagtgca
     1201 agcgctcctt gggtaccgaa taccagacca gatactagca aaattgccaa tcgcaggcga
     1261 tggcggaggc gtttacggcg gtagtttggc aattgtttcc ctgttaagag acttacaaat
     1321 cccatcataa agagtgcaac tacaccatag taggctaatt ttaagattgc ataacaaaca
     1381 actgctaacc aatatgaagg acctgtgtct ggtagataag gttcagccac tagctgtact
     1441 agatagagca atatccctat tcctgtgaat aggaggactg gaaaagtgac cagccaaatc
     1501 agacggaaaa aggaactgac ttgttttctt cccctggtct tcttccaaga ataagcgatg
     1561 gactccttca cactcctgtg ttcaaagtaa atgttcggca gagcgtacat aaagcgtgat
     1621 gcgagccaga agaacaagag gagaaagaac aaaatcaata ttcctagcca gactgtgttg
     1681 gataggtaat ctacgataaa ttggggtact acgattttat taaaataata gatatttaat
     1741 acccgtcgta aagacgggag aagaataact gagtaaaaga gcagaaataa aacctttggt
     1801 aggctgctgt gacggataat cgccaccata ctatctcgta catcccgtaa atagtcgggg
     1861 aggtgcttga ctttttcatc caacagttgc caaacccctg tgaacaatag agctaattct
     1921 agataggcaa tggcaatgtt gacaaaaaag aggagaataa acaagcctgt cacgagcgga
     1981 ttttcagcaa acaccgacaa caaattcgtc ggtgaaaggt aggcatgccc tgtcatagct
     2041 aagagtccct cagaaatcca tgaattgagc ggtatccaaa caaattccat aaaggtaaac
     2101 agggtaaaaa agagcaaaag aatcttgtct aagttgtaat atattttttg aaattcacgc
     2161 tgtatctttt tcatgattct agtgtcccat attctgacag gaattgcaag ccttcatcaa
     2221 atatgctaga ctagaaaaat aaaggaggtt ctcatgatta gaattgcacc gatgactgaa
     2281 gattatttgc atacactttg gaagattggc catcgtgaag ccgcacctcg ctggaaggaa
     2341 tttgcagctc cctattttga tgactaccag gcctgtgcca cttttgaaga ttttcaagca
     2401 ctggaactct accagtggtt acaaaaagat tgtgtcagag caatcttagt ggatcagctg
     2461 cctatcggat ttgtgagcta ttactgggag tgccagtcaa cacgctggct cgaaatcggg
     2521 attgaaatct atgacgataa ggtctgggga aaaggatatg gtacagctgc tctccaactc
     2581 tggattgata ccattttcca gcaatttaca gaattagaac acatcgggct cactacctgg
     2641 tctggcaaca agggcatgat gagaaccgct gaaaaattag gcatgaccaa agaagcccat
     2701 atccgcaagg ttcgatactg gcaagggcat tatcatgatt ctatcaaata tggaatttta
     2761 agagaagaat gggtagagaa taagaaaaaa tcaagttcct aagagcttga ttttttactt
     2821 atctatcttc caaataaacg tgcaaagaag cctttagctt gcacttcttc tgcctgtgct
     2881 ttaacttcgt ccaattccaa cttgagaact tccttgtcgg ccatagcttt tagtgtcaat
     2941 tgctgttgct gatccaactg tttatccttc tcggcaatct gcacatcttt gaccttgagt
     3001 tgttcatctt tttcggcaag ttgcttatct ttggctttta attgactata taagcggatg
     3061 atttcagcat ttttctcgtc aactaaaatc tccatcaatt cacgatgctt gacttcatca
     3121 ctaatcggct catcttcaaa aatggttgtt ttgtagattt cctccaactt aatcaagcca
     3181 gcacgattta caacggtcac acccttatca tttttatcta caaattcttc aggaagtgat
     3241 ttgacacgat tattcatagc ctgccggctc actcctaaaa tttcagctaa ctcactgact
     3301 gttttttcga ttcccataat atcctcggta cttacatttc tcatagtttg tatcattaaa
     3361 atattaccac aaaagcccaa gttctgtcaa attatgggag atttccaaaa caagactatc
     3421 accctctagc tatcttgtaa atccgttctc ttcacttact tgtttgaacc aatatccaga
     3481 tttttttata gttcgtttct gtgtttcaat atccaaggaa ataagtccgt atctattttt
     3541 ataggcattt aaccaagacc aacagtcaat aaaggtccag accatatagc ccttacagtt
     3601 cgccccttca tcaatacctc gatggagctg aatcaaatgg tcttccatga agtgaatccg
     3661 atagtcatcc tgaatcatgc cattttcttc aaaaacatct tccccttcga ctcccatgcc
     3721 gttctcagtt accaaccatt cgatattgcc atagttttcc tggatatttt tggcaatgtc
     3781 gtacagccct tcttcgtaaa tttcccataa tcccagttat tccccccttt ccatcaccag
     3841 ctacgcttcc ctcactttga ggccctgaag tggaggatcc ccacaaaaaa ccttctggaa
     3901 aacgatactc tctttactca gttaccattc ttctacctac tttctttcat gctacagacg
     3961 gagttgttag aacctggatt cacaatgcag cttccacaaa attactttgc ttgtatatac
     4021 aggctcctga tgaaaactaa ttttccttag tctaagtata ctcccctaac ccgtcaatgg
     4081 tcttccgcaa tctcaaggaa aaactccaca aatcatagca aagacccaaa ctactttctt
     4141 gataaaaata tgatacaata aaggcatgaa tacagtagat accattatta tcggagcggg
     4201 gccagctggc atgatggccg ccatttcttc tagtttttat ggcaagaaga ccctgctcct
     4261 tgaaaaaaac aagcgtttgg gcaagaaact atctggcaca ggcggcggac gttgcaatgt
     4321 gaccaacaac ggcacactgg aagacctact ggctggtatt cctggaaatg gccgatttct
     4381 ttacagcgtc ttctcgcaat ttgacaacca tgacatcatg aatttctttc aggaaaatgg
     4441 ggtcaagctc aaggtggagg accacggccg tgtctttccg accaccgacc gttcccagac
     4501 cattatcaag tgcctggaga tgaagatgct ggaaaatggc gtggacatcc gtacagggac
     4561 tgaggtggtg tccgtccgca agatggacga catcttccat gtcaagacca gcgaggaaac
     4621 ctttacggca cctcagctca ttgtcaccac cggcggcaag acctaccctt ccactggctc
     4681 gactggcttt ggtcacgaca ttgcccgcca ctttaagctg gcagtcacgg agattgaagc
     4741 tgctgaaagc cctgtcctga ccgacttccc ccacaagaag ctccaaggca tttccctgga
     4801 cgacgtcacc ctgacctacg acaagcacgt catcacccac gacctgctct ttacccactt
     4861 tggcctgtcg gggccagctg cccttcgtct gtctagtttt gtcaaaggtg gcgaaaccgc
     4921 atttctcgat gctctgccga cccattctga acaagatctg cttgagcatt tagaaaagaa
     4981 cagggaaaaa tcagtcaaga atgcccttcg agaactcatg ccagaccgcc tagccgactt
     5041 tttcgcagag aactacgact gcaaggtcaa acaagtttcc cccaaaaacc tagtccagct
     5101 agtctccctt ctcaaagccc tgccgattaa gattacgggc aagatgtccc tggccaagtc
     5161 ctttgtgacc aagggaggcg ttgacctcaa ggaaatcaac cccaaaacct tggaaagtaa
     5221 gaaaattcct ggcctccact ttgcaggtga ggtcttggac atcaacgccc acacaggcgg
     5281 ctttaacatc acctactgtc ttgcgactgg ctgggtggct ggaagttcct actcttcgta
     5341 aatcaaactc agacgttgtt gacttgattt gatgagtgta aagctcctgt ggagctttac
     5401 agcctgctac ccgaaaataa aaggtagcag tgttctatct acatctaatg gcacgaactt
     5461 tgttccccat atctccaacc tccaaaggtt ccccgaacct ttggagctag tctgagttcg
     5521 attttctttg agtattgcac ttttagaaat cgctcttcaa gctcaaccta aaggagaaac
     5581 catgcctatc aattcattcg gccaagagat tggcctaccc ttaccgcatt atagcagtgg
     5641 tgagcgacca agtctggaga ctatacaagg acacacagtt cgcttagaaa aactgagcct
     5701 gtaccatgca gatgatctct atcagtttta tggaccaagt gccaagaaag ctgactggac
     5761 ctatctaccc attgaaccct tggcagaccg tgactctttt caagcctatt tccaaaagat
     5821 gatggcctct tttgaccctt attaccttgc gatagttgat aaagctacca atcaggcagt
     5881 cggaaccttt gcactcatgc gaatagatac caaccatcgt accatcgaag tgggctgggt
     5941 catcttttct catcaactgc aacggacccg acaggcgaca gaagctcact atcttctcat
     6001 gaactatgtg tttgaagaac tgggctatcg acgttacgag tggaaatgcg actcactcaa
     6061 ccaagccagt cgagccgctg ccaaccgtct ggcctttacc tacgaaggca ccttccgtca
     6121 agccctagtc tataagggac gtaaccgaga taccgcctgg ttttctctat tagaccacga
     6181 atggcctgac cgcaagcatg cccttgaaaa ctggctaaag gattgtaact tcgatggcca
     6241 gggtcagcaa aaacaatccc tatcctcttt ctaaattcaa gcaaaaatct gcttgaattt
     6301 ttttgttttt tattgtatga taaatccata acaatataac aaaaggagat tggctatgca
     6361 actgaaacta tcttctgttt ccaagaaatt cgaccataaa atcattttgg aagaggcctc
     6421 ctttagcttt gaacaaggca agatttacgg tttgctaggg cggaatgggg ctggtaagac
     6481 aaccttgttc aactgcattg cccgtaatct gaccttggat ggtggctcga ttcagtttgt
     6541 gaaggatgaa aatgcctttg actacgacaa cacggacatc ggttttaccc agacctatcc
     6601 gcaactacct gcctttatga cggcttacga gtttgtccgt ttctatatgg atattcacaa
     6661 ggataagctc aaatctcctc gtagtccaga agaatggcta aacttggtcg gtatcggaga
     6721 agaagaccaa catcgcctgc tcaaggattt ttcccacggt atgcagaaca aggtccagct
     6781 acttctgtct ttgattgtcc agccacctgt ccttctcttg gatgaaccgc tgacgtcctt
     6841 tgaccctgtt gctgcccacg agttcaagca gctgattcga gaggctaaga aggattctgt
     6901 tatcatcttt tctacccaca ttctacaact ggctcaggat ctctgtgacg agattgtttt
     6961 gctccatcac caagaattgc aagcagttcc gagtgacaaa ctccacgacc ctgactttga
     7021 acaggaagtg gttgccttgc tgacagcaga ttaggaggag cttatgaaaa caatcctacg
     7081 ttatttttgg tatcaggaaa agtacaacct ctatcggacc gtcaatggat ttttctacta
     7141 cctgcgaaaa ctgccacttg tgggccagag cattccagaa agtattttca agtcttacag
     7201 ttttaagtct ggtctctttt tggtcctgca catcctctcc atccccagtc gctttctggt
     7261 caagggaatt tggttaaccc tgaatttcta cttggcatcc ttttggatca atatcctctc
     7321 tggcgaggaa ttcaattttt ggaatattat tccagagact tggcttctag gcttttccat
     7381 ttggatgacc tttgtcagct acatctatcg gtttggaaag ggatttgagc cttttatcac
     7441 caagtccgaa cgggaattca tgcaaaattt tggactttcc caatctagtt ttctccaaag
     7501 tcaactcttt gtagagccca ttatcaccag tctgtcctac ctgcctgccc tgctgatttt
     7561 ttctagccta tcaggaaatt ggctctatct gcctctagga ttactgacca ttccagcagg
     7621 aagttttacc ggacaggctc tcaatcgttg gttttttaat cgacggattc tatcccgccg
     7681 taattcttgg caatcctggg ttatcttggg tactggtcta gcagtcattg cctgccttat
     7741 ccttttccgc aatcatctgt cgcacatctt tttactacct gtgcttgtct gtcagatctt
     7801 gctcatttgg tttggttatg gttatttgaa acaacagacc aaccacctag actatcttca
     7861 atattgtatg gaccagtcct tgcaaatgga taagaaaatt tttgagctga ccaaagggaa
     7921 cgaatatact cgccagggtt tgcagatgca ggctaagctt agcataaaaa aagggaaaga
     7981 cctgtcccat ctgtcaggca tgacctactt aaatgctctg ctatttgacc gctatcgttc
     8041 tgtccttgcg aaaaaactgc attttcgctt gggttgtctt ttggctattg tcctttttat
     8101 tgaaggaatt cgttggtttt caaaagagga cattcagata agcaatgcca actacatcga
     8161 gggactgcct tttgcgttca tggtcatgta tgtggcctcc atgggcaagg cagtcgcaca
     8221 gatggtcttt gttaattgcg atatttccat gctccactat ccattttacc gcgaagcaaa
     8281 gaccattatt gcaggctttc attatcgttt tctgcaaact gtaaaattaa atgctgcctt
     8341 ctctggttct ctattattgg ccctcatcat ctttaccaga gcgcaactac ctattgaaac
     8401 ctatctccta actgctctcc tcctgctgag tctaacagcc ctattttcct tccacgacct
     8461 ctttatctac tatattctcc aaccctttac caaggacatg gaggttgtca acccagtcta
     8521 taaatttctc agtggcgttc tctactgggt ggcctatctc aatatcaagc tggatttagg
     8581 cagtcacttg tacatcctac tcatttccat agctatgatt gcctatgtca gcatcggcta
     8641 ctggatttta ctgaaaaaag ctccgcagac ctttagattg aaatcataaa aacagcctct
     8701 cgcaagagaa ggctgtttta tactcaatga aaatcaagag tagcctagga aacgaaggtg
     8761 atgatagaac tgaggttcat cgaaccaagt tgacaacgga taattttgat tttcgaagag
     8821 tattgcttta ccaaattccc aagattgcct gccaaaccag tgtcagcact gtcacaccaa
     8881 gccagcaaat cagaccgacc agaagagcag ctctgccatt tttcaccaaa gcaagtacat
     8941 tagtccgcaa accaatggct gccatggcca tgcaaatgag aaacttggac agggttttga
     9001 gcggggcaaa aaaatccgtc cccagtccaa agcgacctgc cattgtagtc accagactgg
     9061 caaggataaa atagaggata aaggtcggaa aacctgccaa gagggactgc ttgtctgcct
     9121 gaactccctt tcctcgagct tgccaaatcg ccaaaaccga cgtaatggga ataatggcca
     9181 gagtccgcgt cagcttgacc gtcaccgccg tgtccaaggt ctgactgccc aggccgtaaa
     9241 ggctgtccca agtagccgcc gttgcggtga ccgacgaggt gtcattgacc gccgttccgg
     9301 cgaacatccc aaaggcctga cccgaatcgg tcgaaaaccc aagccaagtt gccaaagtcg
     9361 gaaaaatcaa ggccgccaag acattaaaga gaaagatgac cgagatagcc tgagccacat
     9421 cctcatcatc tgcctggata acgggagctg tcgccgcaat ggcagagcct ccacagatag
     9481 aggtacctac gccaatcaag gtcgccaaat gagatgaaat aggcaaccat ttccacatca
     9541 gaaatgccaa aaacagggca aaactgatgg ttgacagaat aatcggtaga gattggcgcc
     9601 caactgccag gaccgcagtt aagtttaatc caaatcccaa acaaatcacc gcatactgca
     9661 aaaccttctt agaagtaaag gtcaagcctg gctgaaacgc attctccctt gcgacgtagg
     9721 aatgcaagct catcccgatt aggagggcaa aaacaggccc accaaccagt gaaaaccaac
     9781 tccctaagca ccagcttatt ccagccaaga cgagacaaag tgccacacct ctggcatttt
     9841 tcttaaccat aagtccctcc tagaaaatca agcggagagc agctgtcgtc aagacaccaa
     9901 ccactactgc gaggaggata tttttggtcc tcaggaccac taaaaaggtc ggaatgaggg
     9961 ccagactttc gacagggaga aggctgggaa aggagcctac ctcttcgtcc atgatgctgg
    10021 acagggtcaa tgcaaagata atggtgatgg gtagaaagct gagaaatttc accaactttg
    10081 gaggcaggga tttgttctgt gtcaggacaa aaggcaggac gcgtggcagc caggtcacca
    10141 gagctgacgc cagaataatc aatagaacac tagtttttat catcaatcat cacccccaca
    10201 aaacagccca aaagtgtcgc cagaagcacc gcaacatagg acgacactag cacagacaga
    10261 ccaacatagg ctagaccaac cgccagcaaa atcaagccaa tctttttcaa aggaatggtc
    10321 cgagccatgg cctccaactg acctgagaaa atgccgacaa acatagccac tagggcaaaa
    10381 tctaaaccaa actgctctgg atttggaatc agccctccaa tcagattacc caaaatggta
    10441 aaggttaccc aagaagcgta gctcgcaaag ttgttgccgt acatccagct aggggcaatc
    10501 tgcttttcct caatgtgctt acggagcagt accgcatagg actcatccgt cacaaaagaa
    10561 ccaatcagga tattggaccc cagactgttc ccttgaaaaa tggtcgtcgt atgcaggcac
    10621 atgagaaaat tccgcaggtt aacaaagaaa accgtcactg caatggacac caagggagtc
    10681 cctgccaaaa tcatagcaca gatgacaaac tgggcacttc ctgcatagac caaaaggctc
    10741 atcaaagcca tttccaccac agaaatgcct gaattgaccg aaacgacacc gcaggccaaa
    10801 ccgatactgg catagcccag agctgttggg atagcatccc gcagaccctc tagaaaatcc
    10861 tgttctttca tagaaacctc ctaagacact tactgtgcaa atatgtattt ttctattctc
    10921 tcataatgac cactgatttt caaccatttc ccaacaacaa aaggacctaa agtctaatga
    10981 ccttagatcc tttttatttt gaactgtaca gatggatgac ttaccaagag atatccatct
    11041 gtactcaact tttcgagaaa agctagtttc ttatcaaaaa gatttcgatg aatgacttat
    11101 tttaagcttc ttcttcgtct ttttttctct ttgctgcgaa aagtgctaat cccattccaa
    11161 gaactgctaa tccaagtgaa gttgctgaag ttgctttttc acctgtattt ggcaattgct
    11221 tagctttctt agttgacttg ttggcatttg aagtagaagt aactgatttc actttcactc
    11281 ctgctgcagg attatttgca tctactgctt caacttctgc cgaattcaag tctgaaacat
    11341 ttccagccat atctttagag taagctgtca caactgttcc tggcttgata gcagaacctg
    11401 gaatgataac ttgaccagta acaggatcta caatcacagc tttagcagtt gttgtccatt
    11461 taccatctgc acccttagta acaataacaa gttgagcctt accattgtta tctacgtagg
    11521 taacaacaaa ttcaacagcc tctttagttg gagcaactac aatattacct ttagcatcgt
    11581 ctgtaatcgc aggagcagtt gtatctgcct gtttcacaat ctctgctggc aataccaagt
    11641 cgatagtacc atctgggtac ttgattgaca cagaagcatc tttagaaacg atgatttcag
    11701 ttccttctgg gaatgtattg ttctcttcaa ggagagcctt gatgcgagca atttcttctt
    11761 cagtcaagtt gtttggatca agtactggtg ttactgttac aactggtttg ataagagctg
    11821 aaagtggaag tttgatttca cccaatgcat gatgagttcc agcaccattg attgaaataa
    11881 ttgcttcttc aacagcttta tcgatttcag ccttagctgc tgctttctct tctggtgtca
    11941 agtttggatt tgcatcgata gctgctttcg ctttatctgc ttcttccata agcttgttct
    12001 tagcaccttg cttagctgca tcaattgctt tcttagcatc ttctgctgct gccttgagtg
    12061 cttccttagc aactgctttc tcacctgcaa gagttgcgac atctacttcg tcagctttgg
    12121 ttgctgcatc gattgcgtcg ttagcttttg ccaattcagc atcgactgca tccttagctg
    12181 cttgtttctc agcatctgtc aagtgagtgt tttcttcgat agctttctta gcatcgtcag
    12241 ctgctgcttt aagctcttct ttagcgactg ctttctcacc tacaagagta gcattgtcga
    12301 tagcgtctgc tgtgtctgct ttatcgatag ctttttcagc tttgctcaat tcaacataaa
    12361 catctgcttt cgcttttgct ttctcgtcgt ctgtcaaatt cgcattttca tcgatagatc
    12421 tcaaagcatc ttctgctgct gctttaactt ctgtcttagc aattgttttt tctgttgcaa
    12481 gagttgctac atcgatatct tctgctgtct tagcattgtc aatctcaagg tttgctgctg
    12541 caacttctgc gtcaattgct aatttaagag cagtcttctc agattcaggc aagtttgtgt
    12601 tttcgtcgat agctttctta gcatcgtctg ctgctgcctt gagttctgct ttcgcatttg
    12661 ctttttcagc gtcaagtgtc gctgtttcaa cgtctgctgc tgttttcgct ttttcgatgt
    12721 tttcaagagt agtatctctt gctttctcaa cagcttcctt agcggctgtt ttctcagctt
    12781 ctgacaagtt gtcgttagct tggatgcctt tcacagcgtc tgctgcgtca gctttgactt
    12841 cttctttagc ggctgcttga gtcgcatcga aggtcttgct ttgaatgtca gctgctgttg
    12901 ttgcttctgt gatagctttt tcagcgtctg ctgctgcctt agcaacgttt gctttgtatt
    12961 ctgctttctc ttctggtgtc aagttagcat ttgcttcgat accttccaca gcatctgctg
    13021 tagctgctgc tacttcttgc ttagcgattt ctttttgagc aaggactgtt tcagcatcaa
    13081 ccgtgtctgc atctgttgcg tttgtaatct tagcttctgt ttctttcaaa gctgcatcga
    13141 tggcatctgt gtagactttc ttctcatcgg ctgtcaagtt tgaattttta gcaatagctt
    13201 cttttgcatc atcggctgct gcttttgctt caactttagc aatcgatttc aagccatcaa
    13261 gggcaccttt ggcaacttca tcagctgttg ttgcattctt cacaacttct tctgctgctt
    13321 gacgagcttt cttcaagtct tcaagggctt gtgttttagc tgctgttgac aagttgtccg
    13381 ctgcttcgat cgctttcact gcgtcgtcgt aagctgcttt aatctcgatg tttgcaaggt
    13441 ctttcacagc tgcatcttct aaggcttgaa ctgcttctgg agtcgttgct ttttcgatgt
    13501 tcgcaactgc ttccgctgcc ttagcttgag ctgcaagttt cgctgcatct ttctcttctt
    13561 ttgtcaagtt tgagttcgca tcgatagctg cttctacagt tgccaagtct ttggcaatct
    13621 tgttcttagc atccaattta gctgcgtcaa gaacatctgc agcgattgct tttgtaccag
    13681 cttcttctgc ggcttgagct gcgtctggtg ttgttgcctt atcgatttct ccgtttgctt
    13741 tcttagcttc gtctgctacc gcttggattg ctgcatcctt ctcttctttt gacaagtttg
    13801 gattgctgtt aatagcatct tctgctgctt ctacatcttt ggcaatcttg ttcttagcat
    13861 ccaa
//
LOCUS       DASGAC010000043        13709 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.043, whole genome shotgun sequence.
ACCESSION   DASGAC010000043 DASGAC010000000
VERSION     DASGAC010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13709)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13709)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13709
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.043"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(44..316)
                     /locus_tag="U1335_000977"
     CDS             complement(44..316)
                     /locus_tag="U1335_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HEM5231469.1"
                     /translation="MSIELYKVRQGKIVSGVLAGIAHKLGWESWVTRAIFIAGLLLGK
                     SFLLLIALYIAAAYFLPYKEDRDAERYGTGPRKIKEAEKINKSWFE"
     gene            complement(306..1067)
                     /locus_tag="U1335_000978"
     CDS             complement(306..1067)
                     /locus_tag="U1335_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231470.1"
                     /translation="MTQKREERLIELYEKGVLTKEEARACFKEMNQEPDFLFVEEKEK
                     LNFSLPIFKVFASSKLKQAYTFEGIESLFLKLSEGRLTFTKSKNNQLGVEICYNQDAP
                     EDRLPHLYVEKKGLYFHSSLACRLTINLPQEWMSVLDLELGQADARLDYLPFEDISIR
                     SSRDKKQQDIRLTTCGGYPQHLYVQLAQAPLTLQTGKGQGIRGQIESQSGHVLVNRKK
                     KNSSYQFEKSGNDLLFLKVQTGQGGFYVKGIKDVN"
     gene            complement(1137..1571)
                     /locus_tag="U1335_000979"
     CDS             complement(1137..1571)
                     /locus_tag="U1335_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family protein"
                     /protein_id="HEM5231471.1"
                     /translation="MDLNKYVQEVSLQDFGKEFRHVAIWNRRLRSTGGRFFPRDGHLD
                     FNPKHLEEQGLEVFRKIVRHELCHYHLYYEKKGYRHGDKDFKELLAAVDGLRYAPKLE
                     QTAKPSLLYTCQSCGQVYQRKRRIDLKKYRCGKCRGKLTLKE"
     gene            complement(1558..3714)
                     /locus_tag="U1335_000980"
     CDS             complement(1558..3714)
                     /locus_tag="U1335_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HEM5231472.1"
                     /translation="MEEKYLKIAQELGVSLKQIDTVLALTAEGNTIPFIARYRKDVTG
                     NLDEVVIKSIIDRDKALTALADRKATVLAKIEEQGKLTDQLRQAIEEAEKLADVEELY
                     LPYKEKRRTKATVAREAGLFPLARLILQNVADLEEQAARFICEGFDTAQACLAGAVDI
                     LVEAISEDNKLRAWVYHEVQTNSSLTSELKDQEADEKEVFQIYYDFSEKVAKMQGYKT
                     LAINRGEKLGILKVSFEHNVDKMVRFFELRFPQTNSYIKDVIQQAIKKKILPAMERRI
                     RTELTEEAEEGAIQLFSKNLRNLLLVSPLKGKVVLGFDPAFRTGAKLAVVDQTGKLLT
                     TQVIYPVEPAGQRQIAQAKKDLADLIGQYQVEIIAIGNGTASRESEAFVADLLKDFPD
                     VSYVIVNESGASVYSASELARYEFPDLPVEKRSAISIARRLQDPLAELVKIDPKSIGV
                     GQYQHDVNQKSLSESLDFVVDTVVNQVGVNVNTASPALLAHVAGLNKTISENIVKYRE
                     ENGALTSRQQLKKVPRLGDKAFEQAAGFLRIPDATNFLDNTGVHPESYKAVEKLLELL
                     AIDHLDEAAQEKLKQLAIADTAEKIGVGQETLKDIITDLLKPGRDLRDDFEAPVLRQD
                     VLDVKDLVVGQELQGTVRNIVDFGAFVDIGVHEDGLVHISRMVKRKRDKNGRQQALPH
                     PSEILAVGEIVTVWVVEVDIKRNRIGLSLLKPNGSE"
     gene            complement(3792..4634)
                     /locus_tag="U1335_000981"
     CDS             complement(3792..4634)
                     /locus_tag="U1335_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM5231473.1"
                     /translation="MTRYTFANGVTVPKIGFGTWQIPDGEVAYGAVSYALEAGYRHID
                     TAQIYGNEASVGRAIADSGLAREDIFLTTKVWNDKIGYEDTLASVEESMQKLQVDYLD
                     LLLIHWPNPKAIRDSIGWKERNAQVWKALEELYRAGKVKVIGVSNFMEHHLEALLETA
                     EIIPMANQIMLAPGTPQSELVAYCKAKGILLEAYSPFGTGSLFQSQEAAVLAKEAGCS
                     VAQLALAWSLDKGFLPLPKSTSPENIKANLEIDGLAISPTAVAKLDTLTGLKGQLDPD
                     LAEF"
     gene            complement(4750..5265)
                     /locus_tag="U1335_000982"
     CDS             complement(4750..5265)
                     /locus_tag="U1335_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QueT transporter family protein"
                     /protein_id="HEM5231474.1"
                     /translation="MNTSKWTARDMAEIALVAAIYVALTLTPPLNAISFGAVQFRLSE
                     MLNFLAFYNRKYIIAVTIGCMISNLIGFGVIDLFVGGFSTLIFVTLGVILFEKYKKDY
                     LFGGLFNKAFFYFSFFFAATMFTIALELKVLYDLPFFLTWLTTAAGELLSLLVGAVVI
                     DKLSKKINFEK"
     regulatory      complement(5263..5364)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01054"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="PreQ1 riboswitch class II; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF01054"
     gene            5393..5830
                     /locus_tag="U1335_000983"
     CDS             5393..5830
                     /locus_tag="U1335_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HEM5231475.1"
                     /translation="MKKLFYQLINNEVILYLIAGVAATLVYMVTRMGLFLVIPSILLV
                     TLLANAVAILFAFWTNDRFVFKQAREGWPQRLVKFVSARIATLVMDMALAYLLVQAYP
                     QLIGQFVNHDLTLVNAISTLFSQVLVIVVNYFLSKLFIFKNTK"
     gene            complement(5877..6800)
                     /locus_tag="U1335_000984"
     CDS             complement(5877..6800)
                     /locus_tag="U1335_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEM5231476.1"
                     /translation="MRKTRIVEGLKTFCSTFFSFYRSADSDVTSVAVAYYLLISIFPI
                     LLTLANLLPYYPFDVDMILSVVAEFVPDKLYPSVSSFITSVLTKPSSSWLGISILTTL
                     WTLSRSMTILQKAFNKAYGINEHRDFIIGHLIGIFLGIGLQVIILLSITLLTFGQAVF
                     SYINKLVPIEDAWLKGLLSQTQLVGLMALFAALVMLYFFLPNVRIKKVRYVFPGTLFV
                     LLTMTSIGKLFSIYVDNYANKLLDFRIVTAVVFLVFMLWFIFMAQVLIIGAMINATVQ
                     SMQVEEFHARDGDIVSILNRLKARFTAIDKE"
     gene            complement(6849..7709)
                     /locus_tag="U1335_000985"
     CDS             complement(6849..7709)
                     /locus_tag="U1335_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013903404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl aminopeptidase"
                     /protein_id="HEM5231477.1"
                     /translation="MITIKSQREIDAMKRAGDVLAGIHIGLREIIKPGVDMWEVEEYV
                     RKTCKEKNVLPLQIGVDGELMDYPYATCCGLNDEVAHAFPRHYKLKEGDLLKVDMVLS
                     EPLDKAVVDVSKLNFNDVKAMKKITQTYRGGCADSCWAYAVGQVSEEVQNLMDVTKEC
                     LYRGIEQAVVGNRIGDIGAAIQEYAEGLGYGVVRDLVGHGVGPTFHEEPMVPHYGTKG
                     RGLRLREGMVLTIEPMINTGTWEIDTDMKTGWAHKTLDGGLSCQYEHQFVITKDGPII
                     LTSQGEEGTY"
     gene            complement(7706..8278)
                     /locus_tag="U1335_000986"
     CDS             complement(7706..8278)
                     /locus_tag="U1335_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5231478.1"
                     /translation="MTLWTRLAKFAYFETDHLYLRPFSFEDGESFYEIVSNPENLPFI
                     FPALEDRNIAFSTMVEKFMRSPLGNWALVDKHSERMIGALCFEKVDERQLSAELSYFL
                     KKDYWRRGLMTEAVRTLVYLAFYEFGLRELVIVTHEENVASQMVAKKAGLVQVAQYRG
                     SDRYSHKTRNYLKFSLKKTDFKLEMYEENQ"
     gene            complement(8373..9632)
                     /locus_tag="U1335_000987"
     CDS             complement(8373..9632)
                     /locus_tag="U1335_000987"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001226236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEM5231479.1"
                     /translation="MRKIVINGGKTLKGSVTVSGAKNSVVALIPAIILADGIVTLDGV
                     PAISDVDSLVDIMETMGATVKRDGESLEIDPRGVKDMPMPFGKINSLRASYYFYGSLL
                     GRFGQAVVGLPGGCDLGPRPIDLHLKAFAAMGAKTTYEGDYMRLATNGQRIQGAHIFM
                     DVVSVGATINTILAAVKAEGRTVIENAAREPEIIDVATLLNNMGARIRGAGTDIITIE
                     GVDSLKGTRHQVIPDRIEAGTYIALAAAVGEGIRIDNVLYEHLESYIAKLEEMGVRMT
                     ISEDSIFVEKQETLKAVNIKTSPYPGFATDLQQPITPLLLKAEGTGTIVDTIYEKRVG
                     HVQELANLGAKISTRNNHIAFEGPNQLTGTSVKATDLRAGAAMVIAGLMAQGRTEITN
                     IEFILRGYSNIVDKLTELGADIQLIED"
     gene            complement(9763..10962)
                     /locus_tag="U1335_000988"
     CDS             complement(9763..10962)
                     /locus_tag="U1335_000988"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEM5231480.1"
                     /translation="MSERKLFTSESVSEGHPDKIADQISDAILDAILAEDPDAHVAAE
                     TAVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTKGEYGFSAESVGVHPSLVEQSP
                     DIAQGVNEALETRQDASQDPLDLIGAGDQGLMFGFAVDETPELMPLPISLSHKLVRRL
                     AELRKSGEIAYLRPDAKSQVTVEYDEDNQPVRVDTVVISTQHDPEVSQEQIRQDVIER
                     VIKEIIPAHYLDDQTNYFINPTGRFVIGGPQGDSGLTGRKIIVDTYGGYSRHGGGAFS
                     GKDATKVDRSASYAARYIAKNIVAAGLAKKAEVQLAYAIGVAQPVSVRIDTFGTSTVA
                     ESKLEAAVRQIFDLRPAGIIQMLDLKRPIYKQTAAYGHMGRTDIDLPWEKLDKVEALK
                     TALQKIK"
     gene            complement(11402..11869)
                     /locus_tag="U1335_000989"
     CDS             complement(11402..11869)
                     /locus_tag="U1335_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000138511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine/deoxycytidylate deaminase family
                     protein"
                     /protein_id="HEM5231481.1"
                     /translation="MSTNRLAWDEYFAAQALLIANRATCKRAKVGAVLVKDNKVIATG
                     YNGSVSGTEHCLDQECLMIDGHCARTLHAEVNAILQGAERGIPKGFTAYVTHFPCLNC
                     SKQLLQVGCKRVVYINEYRMDDYAQYLYKEKGCELVHLPLEVVKQAIADAEFM"
     gene            complement(11888..12625)
                     /locus_tag="U1335_000990"
     CDS             complement(11888..12625)
                     /locus_tag="U1335_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231482.1"
                     /translation="MNETRFLELFNDLDKVLRKVCGVADGEYADVGSMLTKAKELTRH
                     NPVEANWDKLYVARQLRNLMVHEKRTGLKEVAQPSQELITVLEKVIAQYQEPITIADY
                     LQKTQKIKPVIFEAKDKLIKALEIVEQEHFSKFPIFSDKVYQGLVSDKGLTNWLAKAS
                     KETGSIREKLVEASLEDVLACEEESIRVIVLPITTHLYQVINHFEGCKRTTVLVSRQA
                     SGKLHSPEDIVGIITAQDIAEIYGMVD"
     gene            complement(12627..13661)
                     /locus_tag="U1335_000991"
     CDS             complement(12627..13661)
                     /locus_tag="U1335_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HEM5231483.1"
                     /translation="MKTLDYIVTLTNTPSPTGFTTDIMNYIKAEVESFGYAASKTAKG
                     GVLVTVPGENDQEHRMVTAHLDTLGAMVRAVKPDGRLKMDLVGGFGYPSIEGENCLIH
                     CAKNGKTFTGTILMHQTSVHVYRDASTAERNQTNMEIRLDEKVTNADETRALGIEVGD
                     FISFDPRTVVTETGFIKSRHLDDKVSAAILLHLLKVYKEEGVILPYTTHFYFSNNEEI
                     GYGANSSIPAQVVEYLAVDMGAMGDDQQTDEYTVSICVKDGSGPYHYELRQHLVALAE
                     RDGILYKLDIYPYYGSDASAAMRAGADVKHALLGAGIESSHSYERTHLDSVVATERMV
                     DAYLKSAMVD"
BASE COUNT         3999 a         3328 c         2525 g         3857 t
ORIGIN      
        1 agcatacaaa aaacttgagc ctttaaactc aagttttttt gtattattca aaccaagact
       61 tatttatctt ttccgcttct tttatcttac gtggacctgt tccatagcgt tccgcgtccc
      121 tatcttcctt atatggtaaa aaataagctg ctgcaatata gagagcaatc agaaggagga
      181 aggatttgcc taagaggaga cctgcaataa atatcgcgcg tgttacccag gattcccagc
      241 ccaatttatg cgctatgccg gcaagaaccc ctgatactat cttcccctgc cttactttat
      301 acaattcaat tgacatcttt tattcctttc acgtaaaagc ctccttgacc tgtttgtacc
      361 ttcaagaaaa gtaaatcatt gccagatttt tcaaactgat aggaactatt tttctttttc
      421 cggttaacca agacatgacc tgattgcgac tcaatctgcc cccgaattcc ctggcctttg
      481 ccagtttgta aagtcaaggg agcctgagct agttgcacat acaagtgttg gggataacca
      541 ccgcaagtcg tcaagcgaat atcctgttgt tttttatccc ttgaactgcg gatagaaata
      601 tcttcaaatg gtaagtaatc caagcgagca tctgcctgac caagttccaa atccagcact
      661 gacatccatt cctgaggcaa gttgattgtc aaacgacagg ccaagctact gtgaaaataa
      721 agcccctttt tttcaacata aagatgagga agtctatctt caggtgcatc ctgattgtaa
      781 caaatttcca caccaagctg attgttcttg gattttgtaa aggttagccg cccttcagaa
      841 agttttagaa atagcgactc tatcccttca aatgtatagg cttgcttcaa cttagatgag
      901 gcaaatactt taaaaattgg caaggaaaaa ttcaattttt ctttttcttc cacgaaaaga
      961 aagtctggtt cttggttcat ttccttaaaa caggcacgcg cctcttcctt ggtcaagaca
     1021 cctttttcat ataactcaat taagcgttct tctctctttt gcgtcataga ctcacctcaa
     1081 ttctactcta gtatatcaca tttctccaca aaaaaatcag cccgaagact gattctctat
     1141 tctttcaaag taagtttgcc cctacacttc ccacatcggt atttttttag atcaatgcgg
     1201 cgcttgcgct ggtagacttg tccacaggac tgacaggtat acagcaggct aggcttggca
     1261 gtttgttcta gttttggagc atatcgcagg ccgtccaccg cagccagcag ttccttgaag
     1321 tccttgtccc catgccgata gcccttcttc tcatagtaga gatggtaatg gcaaagctcg
     1381 tggcggacaa tcttccgaaa gacttctaaa ccttgctcct ccaaatgctt gggattgaaa
     1441 tccaaatgcc catcccttgg aaaaaagcga ccacccgttg agcgtaatcg cctgttccag
     1501 attgctacat gccgaaattc cttaccgaag tcttgcaagg agacttcttg cacatactta
     1561 ttcagatcca tttggtttca aaaggctaag accgatacga tttcgtttga tatccacttc
     1621 aaccacccag accgttacga tttccccgac ggcgaggatt tcacttggat gaggcaaggc
     1681 ttgttggcgt ccatttttat cccgtttgcg cttgaccatg cgtgaaatgt ggactagacc
     1741 atcctcgtgg acaccgatgt ccacaaaggc tccaaagtcc acaatattgc ggaccgtacc
     1801 ttgcaattcc tgtccaacta ccaaatcctt gacatccaag acatcttgac ggaggactgg
     1861 tgcttcaaag tcatcccgta aatcacgacc tggcttgagc aagtctgtga tgatgtcctt
     1921 caaggtttcc tgaccgacac cgattttttc tgccgtatct gcgatagcaa gctgcttcaa
     1981 tttttcctgc gcagcctcat ctaagtggtc aatagctaga agttctaaca gtttttccac
     2041 agccttgtaa gactcggggt gcacgccagt attgtccaaa aagttagtcg catctgggat
     2101 gcgtaagaaa ccagctgcct gctcaaaggc cttgtcaccc agacgaggca cctttttaag
     2161 ttgctgacga gaggtcagag caccattttc ctcgcggtac ttgacgatgt tctccgaaat
     2221 ggtcttgtta agaccagcaa cgtgagccaa aagggcagga ctggccgtat tgacattgac
     2281 accgacctgg ttgaccaccg tatcgaccac aaagtctaga ctttcagaca gagacttctg
     2341 gttgacatcg tgctggtact gaccgacacc gatcgactta ggatcgattt tgaccaactc
     2401 agccaaaggg tcttgtagac ggcgggcgat ggaaatggca gagcgttttt ccacagggag
     2461 gtctggaaac tcatatctgg ccagttcaga agctgagtag acagaggctc cgctttcatt
     2521 gacgatgacg taagaaacat cagggaagtc cttgagtaaa tcagcgacga aggcttcaga
     2581 ttcacggctg gccgttccat ttccgatagc aatgatttcc acttggtatt gtccaatcag
     2641 gtctgccaag tctttttttg cctgagcaat ttgtcgctga ccagccggct caactggata
     2701 gatgacctgg gttgtcaaga gttttcccgt ctggtccacc actgctagtt tagctcctgt
     2761 ccgaaaagct gggtcaaaac caagaacaac cttgcctttt agaggagata caaggagcag
     2821 atttcgtagg tttttagaga aaagttggat agctccttct tctgcttctt ccgtcaattc
     2881 tgttcgaata cgacgctcca tagcaggcaa aattttcttc ttgatggcct gctggatgac
     2941 atccttgata tagctattgg tctgtggaaa gcgtagttcg aagaaacgga ccatcttatc
     3001 cacattgtgt tcaaaagaaa ccttgagaat gcctaatttc tcaccacggt taatggccag
     3061 ggtcttatag ccctgcattt ttgccacttt ctcagaaaaa tcatagtaaa tctgaaagac
     3121 ttctttctca tctgcttctt gatcttttag ctctgaagtc aggcttgaat tggtctgtac
     3181 ttcatggtag acccaggccc gaagcttatt gtcttctgag atagcttcga ccaaaatatc
     3241 cacagcccca gctaaacaag cctgagcagt atcaaaacct tcacagatga acctagcagc
     3301 ctgttcttcc aaatcagcca cattctgcaa aattagacga gccagcggga acagtccagc
     3361 ctcacgcgcc accgttgcct tggtccgacg tttttcctta taaggcaggt agagttcttc
     3421 cacatctgcc aacttttccg cttcctcgat agcctgacgg agctggtctg tcaatttgcc
     3481 ttgttcttca atcttggcaa ggacggtagc cttacggtca gcaagagcag tcaaagcctt
     3541 atcccgatcg atgatagact tgatgaccac ctcgtccaag ttccccgtca cgtccttgcg
     3601 ataacgagcg ataaagggaa tagtattgcc ttcagctgtt aaagcgagaa ccgtatcaat
     3661 ctgttttaaa ctaacgccca attcctgagc aattttcaaa tatttttctt ccatagctac
     3721 tattataaca tgaaagcggt aggttggaga tgacaaaaga gtatgctgca gtgacaacat
     3781 actcttttat attaaaattc tgccaaatca ggatccaact ggccttttaa gcctgtcaat
     3841 gtatccaact ttgcaactgc tgtcggacta atagccaagc catcaatttc caaattcgcc
     3901 ttaatatttt ctggactagt tgatttcggg agagggagaa agcctttatc taaagaccaa
     3961 gctagtgcca gctgagcaac actacaacca gcttctttag ccaaaacggc tgcttcttgg
     4021 ctttggaaaa ggcttcctgt accaaatggg ctataggcct ccaagagaat cccttttgct
     4081 ttgcagtaag caactaattc tgactgagga gttcctggag ctaacataat ctgattagcc
     4141 atcgggataa tctcagctgt ttccagcaaa gcttctagat ggtgttccat aaagttagaa
     4201 actccaatta ctttcacttt tccagcacga tagagctctt ctaatgcctt ccaaacctgg
     4261 gcattgcgtt ccttccagcc aatgctgtcg cgaatagcct ttggatttgg ccaatggatc
     4321 agtaacaaat ccagataatc cacctgaagt ttttgcatgg attcttctac tgacgcaagg
     4381 gtatcttcat agccaatctt atcattccaa accttagttg ttaaaaaaat gtcctcacga
     4441 gctaggccac tatcagctat agcccgacca acactagctt cattgccata aatttgagca
     4501 gtatcaatat ggcgataacc agcttccaat gcataagaaa ccgcaccgta cgccacttca
     4561 ccatcgggta tctgccaagt tccaaaacca attttaggaa cagttacacc atttgcaaac
     4621 gtatatcttg tcataaaaga cctcctattt cttctatccc cagtataaac taaattgtca
     4681 atcaatacaa aataatgcga cctaaaaata aaagacaccc gaaagtgtct gctcacattt
     4741 attgtatact tacttttcaa aatttatttt cttggatagt ttatcgataa caacagctcc
     4801 aactaataga gaaagcaatt ctcctgctgc tgttgtcaac caagttagaa agaatggtaa
     4861 atcatataag acttttaatt ctaaagcaat ggtaaacata gttgccgcaa aaaagaatga
     4921 gaaataaaag aaagccttgt taaataatcc accgaataga tagtccttct tgtatttttc
     4981 aaacaggata acccccaacg taacgaagat taatgtcgag aatccaccca caaaaaggtc
     5041 aatcacgcca aaaccaatca agttggaaat catgcaacca atggtcacag cgataatata
     5101 cttacgatta taaaaagcca agaaattgag catttcagac aaacgaaact gaacagcccc
     5161 gaaggaaata gcattcaatg gcggtgtcaa ggtaagagcg acataaatcg ccgcaacaag
     5221 agcaatttct gccatatctc tggcagtcca tttagatgta ttcatgaaaa ttctccttta
     5281 gcaaaatgct tgtaatatgc ttgggtaaag tgagcaagcc ccaagggtca ttgaaaattc
     5341 aacaacgttg attagtatag catatttttt ctaaaaatga tagactagtc ctatgaaaaa
     5401 actattttat caactcatca ataacgaagt tattctctat ttgattgcag gtgtggcagc
     5461 aacccttgtc tatatggtca ctcgaatggg gctattttta gtcattcctt ccattctatt
     5521 ggttactctt ttagccaatg cagtagctat cctctttgcc ttttggacca acgaccgttt
     5581 cgttttcaaa caagccagag agggttggcc tcagcgattg gtcaagtttg tatctgcccg
     5641 catcgcgacc ttggtcatgg atatggctct agcctattta ttagtacaag cctacccaca
     5701 attgattggg cagtttgtca accatgattt gacacttgtc aacgccattt ccactctctt
     5761 ctctcaagtc ttggtcattg tggtcaacta tttcttgagc aaactcttta tctttaaaaa
     5821 tacgaaatga ggctccaacg gaacctcatt tttatatata gcttgatttt cctgcttcat
     5881 tctttatcta tcgctgtaaa tcttgccttt agcctattca agattgaaac aatatcccca
     5941 tctctagcat gaaactcttc tacctgcata ctttgaaccg tagcattaat cattgcacca
     6001 atgatgagta cttgagccat aaaaatgaac caaagcataa aaacaagaaa gacgacagct
     6061 gttactattc taaaatccag caacttatta gcataattat caacataaat cgaaaataac
     6121 tttccaatag aagtcatcgt caacagaaca aacaacgttc ctggaaaaac atatcgaact
     6181 ttttttatcc gaacatttgg caaaaagaaa taaagcataa ccaaggcggc aaacagagcc
     6241 attaaaccta ctaactgtgt ttgactaaga agtcccttca gccaggcatc ttcaatagga
     6301 accagcttat taatataaga aaaaactgcc tgcccgaaag tcaaaagcgt aatacttaag
     6361 aggataatta cctgcagacc aattcctaaa aatatgccaa tcaagtgtcc aataataaaa
     6421 tcacggtgtt cattgatgcc ataagcctta ttaaaggcct tctgcaaaat agtcatacta
     6481 cgtgacaggg tccaaagagt tgtcagaatt gaaatcccta accatgatga cgacggcttt
     6541 gttaatacag aagtgataaa agatgaaacc gaaggataga gcttgtctgg cacaaattca
     6601 gctacaaccg ataaaatcat atccacatca aatggataat atggcagtaa attcgcgaga
     6661 gttagaagaa tagggaaaat agaaattaac aaatagtatg ctactgcaac acttgttaca
     6721 tcgctatcag cagaacgata aaaagaaaag aaggttgagc agaatgtttt caaaccttca
     6781 actattctgg ttttcctcat tctctcctcc ttcctcaatt catctattat tcacgaccac
     6841 accgagaatt aataggtccc ttcttcacct tgactggtca aaataatcgg tccatctttg
     6901 gtgatgacaa attggtgttc gtattgacaa gacaagccac catcaagtgt cttatgagcc
     6961 caaccagtct tcatatccgt atcaatttcc caagtccctg tattaatcat aggctcgata
     7021 gtcaaaacca tgccttcacg caagcgaaga cctcgacctt tagttccata atgaggaacc
     7081 atcggctctt cgtggaaggt tggtccaacg ccgtgaccca ccaagtcacg aacaacaccg
     7141 tagccaagac cttccgcata ttcttgaata gcagcaccga tatcgccgat acgattgcca
     7201 acaactgctt gctcgatacc gcggtacaaa cattccttag tcacatccat caagttttgt
     7261 acttcttcag acacctgacc gactgcatag gcccaacaag aatctgcaca accaccacga
     7321 taggtctggg tgattttctt catagccttg acatcattaa agttgagctt agaaacatca
     7381 actaccgctt tatccaaagg ctcgctcaaa accatatcga ccttcagtaa atcaccttct
     7441 ttaagtttgt aatgacgcgg aaaagcatga gcgacctcgt cattcaatcc acaacaagtc
     7501 gcataaggat aatccatcaa ttctccatca acaccaattt ggagtggcaa aacattcttt
     7561 tccttacacg ttttacggac atattcctct acttcccaca tgtccacacc tggcttgata
     7621 atctctcgca aaccaatatg aataccagcc agaacatctc cagcacgttt cattgcatca
     7681 atttctcgtt gtgatttaat agtaatcatt gattctcctc atacatttct aatttaaaat
     7741 ctgtcttctt caagctaaat tttagataat ttcttgtttt atggctatag cggtcacttc
     7801 cgcgatactg cgcaacctgt accaaaccag cttttttcgc caccatctga ctggccacat
     7861 tttcctcatg agtgacgata accagctccc tcagaccaaa ctcataaaaa gctagataga
     7921 ctaaagtcct cactgcttcc gtcattaagc ctcttctcca gtagtctttt tttaggaaat
     7981 agctgagctc cgcagaaagt tgacgttcat ctaccttttc aaagcaaagc gcaccaatca
     8041 tcctctccga atgcttatca actaaggccc agtttcccaa tggtgaacgc ataaattttt
     8101 caaccattgt cgaaaaagca atatttctgt cctccaaagc tggaaagata aaaggaagat
     8161 tttcgggatt tgatacaatt tcatagaaac tttctccatc ttcaaaagaa aatggtcgta
     8221 aatacaaatg gtccgtttca aagtaagcaa acttcgctag tcttgtccaa agtgtcatag
     8281 tgtacccaag gggctgagaa ttactcccag ccccagattg ttttgttttt aaatcgatta
     8341 cgttttgaga aagtagttct caattagact ctctaatcct caatcaattg aatatctgca
     8401 cctaattctg tcagcttatc aacaatattt gagtaaccac gcagaataaa ctcaatgttt
     8461 gtaatttctg tacgcccttg agccattaaa ccagcgataa ccattgcggc tcccgcacgc
     8521 aaatcagtag ctttaacaga tgtaccagtc agttgatttg gaccttcaaa ggcaatatgg
     8581 ttgttacgag tagagatttt tgctccaaga tttgcaagct cctgcacatg accaacacgt
     8641 ttttcataaa tcgtatcaac aatcgtacca gtcccttctg ccttaagtag taaaggtgta
     8701 atgggttgct gcaagtctgt cgcaaaacct ggataaggtg atgttttgat attcactgcc
     8761 tttaatgttt cttgtttttc aacaaaaata ctgtcttcag aaatggtcat gcgaacaccc
     8821 atttcttcca acttagcgat gtaactctct aagtgttcat aaaggacatt atcgatacga
     8881 ataccttcac caacagcagc agcaagggca atataagtcc ctgcttcaat acggtctgga
     8941 atcacttgat gacgtgttcc ttttagactg tctacgcctt caatggtgat aatatctgta
     9001 cccgcaccac ggatacgtgc ccccatatta ttaagcaaag ttgccacatc aataatttca
     9061 ggttcacgcg ccgcattttc aataactgta cggccttctg ctttgacagc tgctaagata
     9121 gtattaattg tcgcaccgac gctgacaaca tccatgaaga tatgtgcccc ttgaatacgc
     9181 tgaccattag ttgccaagcg catatagtca ccttcatagg ttgttttcgc acccatggct
     9241 gcgaaggcct tcaagtgcaa atcaattgga cgcggaccca aatcacaacc acctggcaag
     9301 ccaacaacag cttgaccaaa gcgaccaagg agggaaccgt aaaaatagta ggaggcacgc
     9361 aagctattaa ttttaccaaa tggcataggc atgtctttta caccacgagg gtcaatctcc
     9421 aagctttcac catcacgctt gaccgtcgcg cccattgttt ccataatatc aactaagcta
     9481 tctacatccg agattgcagg cactccgtcc agagtaacaa tcccatctgc aagaataatg
     9541 gccggaataa gagcaacaac tgagtttttg gcaccactaa cggtaaccga ccctttcagt
     9601 gtttttccac cattaattac aatttttctc atactagcat tcactttctt aatttgccta
     9661 aaaaggcata cgtttcattt taccacaatg ggtggtaaaa tgctagttat ttgatatata
     9721 aaaaaacagg aggcaagtct gtctcctgtt ttgcaactgt tcctacttaa tcttttgtaa
     9781 cgcagttttc aaggcttcta ccttgtccaa tttctcccat gggagatcaa tatccgtacg
     9841 tcccatatga ccataggctg cagtttgctt gtaaatcgga cgtttgaggt ccaacatttg
     9901 aataatacca gctgggcgca aatcgaaaat ctgacgaaca gctgcttcta atttactctc
     9961 agccactgta cttgtaccaa atgtgtcgat gcgaactgaa actggttgag caacaccgat
    10021 agcgtaagcc aattgaactt ccgccttttt agccaaacca gctgcgacga tattttttgc
    10081 gatgtagcgt gccgcataag atgcagaacg gtccactttg gtcgcatcct taccagagaa
    10141 ggcaccgccg ccatgacgag aataaccacc ataggtatca acgataatct tacggccagt
    10201 caaaccagag tccccttgag gtccgccaat gacaaagcga ccagttgggt tgataaagta
    10261 gttggtttgg tcatccagat aatgagctgg aatgatttcc ttgattacac gttcaatgac
    10321 atcctgacga atttgctcct ggctaacttc tggatcatgc tgggtcgaaa taacgactgt
    10381 atccacacga acaggttggt tgtcttcatc gtattcaact gttacctgtg acttagcatc
    10441 tggacggaga taagcaattt caccagattt tctcaactcg gccaaacgac gcaccaattt
    10501 gtgactaagt gaaattggca acggcataag ttcaggcgtt tcatctactg caaaaccaaa
    10561 catgagcccc tggtcacctg caccaatcaa atccaatgga tcttgactag catcttgacg
    10621 agtttccaag gcttcattga cgccttgggc aatatctggc gattgctcta caagtgacgg
    10681 atgaacccca accgactcgg ctgaaaaacc atactcacct tttgtatagc caatctccgc
    10741 aatcgtatca cgtaccacac ggttaatatc cacataggca gtggtggaaa tttcaccaaa
    10801 gacatgaaca ctgcctgtat aaacagccgt ctccgccgct acgtgcgcat ctggatcttc
    10861 tgctaaaata gcatccaaaa tggcatctga aatctggtct gcaatcttat ccggatgccc
    10921 ctccgaaaca gattcagacg taaacaactt acgttctgac ataaaaatgt cccccttaaa
    10981 atagaatata tgctagaaac ctagcgggtt actaaggtta caaagaacta gtcttcgact
    11041 agttctttgc gaaagacacc tgtcttaagc aaagggaaat cctatttgcg aaagacacct
    11101 gtcttgagca aaggaaattt tccagatacc caacgagaaa gacaatacca gactgtatga
    11161 aatcagcctt atttgaagaa aatggtgact gaagtgtagt aaagttttta cgcttactat
    11221 tattccgtgg taccagcttc tttaattgtg gttcaagtgt ttctgcaaat attaactagt
    11281 ctataaacta ccttttcggg acttaataac gtttctagta taccatagtt tcagctgtct
    11341 gggcagttca tttacaaaaa ataaaaaaga agttaccact ttctgataac ttctttgctg
    11401 attacataaa ttcggcatct gcaattgcct gtttaaccac ctctagaggc aaatgaacca
    11461 actcacagcc cttttcttta tacaagtact gagcatagtc atccatgcgg tattcattga
    11521 tatagacaac ccgcttacaa ccaacctgta acaattgttt ggagcagttg aggcatggga
    11581 aatgggtcac ataggcagta aaaccttttg gaattccccg ctccgctcct tgtaaaatgg
    11641 cattgacctc cgcatgcagg gttctagcac aatgaccatc aatcataagg cattcctgat
    11701 ccaaacaatg ttcggttcct gaaacagaac cgttgtagcc tgttgcgata accttattgt
    11761 ccttcaccaa aaccgcaccg acctttgctc tcttacaggt cgcccgattg gcaatcaaaa
    11821 gcgcctgagc cgcaaaatac tcatcccaag ctaaacgatt tgttgacatg acttctcctt
    11881 tctccactca atccaccatt ccataaattt ctgctatatc ttgtgccgta atgataccaa
    11941 caatatcttc aggagaatga agcttcccgc tcgcctgacg actgactagg acggttgtgc
    12001 gcttacaccc ctcaaaatga ttaattacct gataaagatg ggttgttatt ggtagaacaa
    12061 ttacccgaat actctcttcc tcacaagcta gtacgtcttc aagactagcc tccaccaatt
    12121 tttcacgtat agagcccgtt tccttgcttg ccttggccaa ccaatttgtc aatcccttgt
    12181 cagaaaccag accttgataa accttgtcag aaaaaatagg aaacttagaa aaatgctctt
    12241 gctccacaat ttctaaagcc tttatcaatt tgtccttggc ctcaaaaata actggcttaa
    12301 ttttctgggt cttttgcaaa tagtcggcaa tggtaatcgg ttcttggtac tgggctatca
    12361 ctttttccaa aacagtgatc aattcctgcg aaggttgggc tacttccttc aaacctgttc
    12421 gtttctcatg aaccatgaga ttacgcaact gacgagccac atagagttta tcccagttcg
    12481 cctcaacggg attatgtcgc gtcaattcct ttgccttggt caacatagag cctacatctg
    12541 catattcccc atccgcaaca ccgcacacct tacgcaagac cttatccaag tcattgaaca
    12601 actctaaaaa acgggtttca ttcatcttaa tctaccattg ctgatttcaa ataggcatct
    12661 accatccgct cagtcgcaac tacagaatcc aaatgcgtcc gttcgtagga atggctggac
    12721 tcaataccag cccccaatag ggcatgctta acatctgcac ctgctcgcat agctgccgaa
    12781 gcatcggaac catagtaagg ataaatatcc agcttataaa gaattccatc cctctcagct
    12841 aaggctacca agtgctgacg gagttcataa tggtagggac ctgagccgtc cttgacacag
    12901 atagaaaccg tgtactcatc cgtctgttgg tcatctccca ttgcccccat atcgactgcc
    12961 aaatattcaa ccacctgagc aggaatgctg gaattggccc cgtagccaat ctcttcattg
    13021 tttgaaaaat agaaatgtgt cgtataaggc aagattactc cctcttcctt ataaaccttc
    13081 aaaagatgga gcaagatagc tgcggatacc ttatcatcca agtgacgact cttgataaaa
    13141 ccagtttctg tcacgacggt acgaggatcg aaggagataa aatctccgac ttcaatacct
    13201 aaggcccgcg tctcgtccgc attggtcact ttttcgtcca aacgaatttc catgttggtc
    13261 tgattgcgct cagcggtact ggcatctcgg tagacatgga cagaggtctg gtgcatgaga
    13321 atagtacctg tgaaagtctt gccattttta gcgcaatgaa tcaaacaatt ttctccctca
    13381 atagaagggt atccaaatcc tcccaccaaa tccattttaa gtcgaccatc tggcttcact
    13441 gcacgaacca tggcccccag tgtgtccagg tgagcagtca ccatgcggtg ttcctggtca
    13501 ttttcccccg gaactgtcac caaaacacca cctttagcgg tcttactagc agcatagccg
    13561 aaactttcaa cctctgcctt gatgtagttc attatatccg tcgtaaagcc agttggcgac
    13621 ggagtgttgg tcaatgtaac aatgtaatca agtgtcttca tgaaaacctc ctattcataa
    13681 gactattata gcagttttaa ataaaatga
//
LOCUS       DASGAC010000044        13444 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.044, whole genome shotgun sequence.
ACCESSION   DASGAC010000044 DASGAC010000000
VERSION     DASGAC010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13444
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.044"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            94..1926
                     /gene="lepA"
                     /locus_tag="U1335_000992"
     CDS             94..1926
                     /gene="lepA"
                     /locus_tag="U1335_000992"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017645216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEM5231484.1"
                     /translation="MNLEELKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSRE
                     MQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLA
                     ACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPIINKIDLPAADPERVRQEIEDVI
                     GLDASEAVPTSAKAGIGIEEILEQIVEKVPAPTGDVEAPLQALIFDSVYDPYRGVILQ
                     VRIVNGVVKPGDTIQMMSNGKTFDVTEVGIFTPKAIGRDYLATGDVGYIAASIKTVAD
                     TRVGDTVTLAENPASEPLAGYKQMNPMVFAGIYPIDSNKYNDLREALEKLQLNDASLQ
                     FEPETSQALGFGFRCGFLGLLHMDVIQERIEREFNIDLIMTAPSVVYHVNMTDGEMID
                     VANPSEFPDPTKIATIEEPYVKAQIMVPQEYVGAVMELAQRKRGDFVTMDYIDDNRVN
                     VIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRSSKLVKMDILLNGDKVDALSFI
                     VHKEFAYERGKIIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGG
                     DVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDEDDKK"
     gene            complement(1976..2158)
                     /locus_tag="U1335_000993"
     CDS             complement(1976..2158)
                     /locus_tag="U1335_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019320686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase"
                     /protein_id="HEM5231485.1"
                     /translation="MPFVRIDLFEGRTEEQKIALAREVTEVVSRNTNAPKEAIHVFIN
                     DMPEGTYYPQGEMKRK"
     gene            2604..3179
                     /locus_tag="U1335_000994"
     CDS             2604..3179
                     /locus_tag="U1335_000994"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HEM5231486.1"
                     /translation="MAQLYYKYGTMNSGKTIEILKVAHNYEEQGKPVVIMTSALDTRD
                     AFGVVSSRIGMRREAVAIDDDMDIFGFIEKMEPRPYCVLIDEAQFLRRHHVYDLARVV
                     DELDVPVMAFGLKNDFRNELFEGSQHLLLLADKLDEIKTICQYCSKKATMVLRTQDGK
                     PTYEGEQIQIGGNETYIPVCRKHYFSPEIEL"
     gene            3608..4687
                     /gene="prfA"
                     /locus_tag="U1335_000995"
     CDS             3608..4687
                     /gene="prfA"
                     /locus_tag="U1335_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001028822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEM5231487.1"
                     /translation="MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEAATR
                     DTVTAYREYKTVLQNIIDAEEMIKESSGDADLEEMAKEELKQAKADKEAYEEKLKILL
                     LPKDPNDDKNIILEIRGAAGGDEAALFAGDLLTMYQKYAEGQGWRFEVMEASYNGVGG
                     IKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLIMPEVEEVEYDI
                     DPKDLRVDIYHASGAGGQNVNKVATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIR
                     ARVADHFAQIAQDEQDAERKSTIGTGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTIL
                     SGKMDEVVDALVLYDQTQKLEELNK"
     gene            4687..5520
                     /gene="prmC"
                     /locus_tag="U1335_000996"
     CDS             4687..5520
                     /gene="prmC"
                     /locus_tag="U1335_000996"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEM5231488.1"
                     /translation="MNYAQLFAAYEEQLVAIGEEAESLSFTFRGLKGLNFTEFLHLLR
                     QEVTPTDKEEIDAIFQQLSQHRPAQYIIGKADFHGLEFAVDERVLIPRPETEELVDLI
                     LQENSGAGLRILDIGTGSGAIAISLAKARPDWEVVAVDISKDALAVAQENARNNQVSV
                     HFLESDVLQAVTGQFDIIVSNPPYISPDDTDEVGLNVLTSEPHLALFAEEDGMAIYRQ
                     IAEQAGAFLKEKGKLYFEIGYKQGQDLTDLLALHFPKKRIRVLKDQFGQDRKVIADDN
                     G"
     gene            5507..6115
                     /locus_tag="U1335_000997"
     CDS             5507..6115
                     /locus_tag="U1335_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HEM5231489.1"
                     /translation="MTMDKLRTILENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQ
                     RPRDKAMNLNVSNLNDIYFFSQNTPFFLEKLYNRFMPGPLTIILKANEKVPFWVNSGL
                     DTVGFRLPNHEQTLRLISETGPLIGPSANISGNESGKKFSDIQAQFPVDLPGIEDDQA
                     LTGIDSTILDLSGQKARILRQGAISREEIQKAIPEIEFEVVL"
     gene            6112..6543
                     /locus_tag="U1335_000998"
     CDS             6112..6543
                     /locus_tag="U1335_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5231490.1"
                     /translation="MIRPIEKDDLVVIREINAQSLGYDCSLEQTERQFFRCTSTLGHI
                     LLVYIDDISGAVQGYIHAQVYESLYSDTGLNILGLAVLPGHQGQGIGASLLKAVEQIA
                     QKEGYHFIRLNSAESRLQAHLFYEKNGYHSDKMQKRFIKHI"
     gene            6567..7826
                     /locus_tag="U1335_000999"
     CDS             6567..7826
                     /locus_tag="U1335_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEM5231491.1"
                     /translation="MIFDKVNYKEFDKEVWEAIQAEEKRQQNNIELIASENVVSKAVM
                     AAQGSILTNKYAEGYPGRRYYGGTECVDVVESLAIERAKEIFGAKFANVQPHSGSQAN
                     CAAYMALIEPGDTVMGMDLAAGGHLTHGASVSFSGQTYNFVAYNVDEETGLLDYDAIL
                     KQAKEVQPKLIVAGASAYARTIDFAKFREIADAVGAKLMVDMAHIAGLVAAGLHPNPV
                     PHAHITTTTTHKTLRGPRGGLILTNDEELIKKINSAIFPGIQGGPLEHVIAAKAVSFK
                     EVLDPAFKDYAQKVIENSKAMAEVFLANPNFKVIAGGTDNHLFLVDVTKVVENGKVAQ
                     HLLDEVNITLNKNSIPYEKLSPFKTSGIRIGSAAITARGFGVEEARKVAQLTIKALEN
                     AENETALEEVRQEVRALTDQFPLYEGL"
     gene            7826..8800
                     /locus_tag="U1335_001000"
     CDS             7826..8800
                     /locus_tag="U1335_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006153495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein"
                     /protein_id="HEM5231492.1"
                     /translation="MDIFVKKAIIHQFSPDDTELVLADQLLTVSPKIEEYLRKKIERV
                     FSDEAKTGQFNPDNPFLDYLDGDLLTNSVKIANLWKEEFSISENLKTNDLIFIEFERN
                     GVEHFAFLRISLRENLAHVGLESGSPLKITQNNLPGAGSAPDEALIVNLQTRKYHLIE
                     KRIKHNGAFLNYFSDNLLQVTPAISAKKSIKAVEQTAQKIADNFHQGDFQFQSKVKSA
                     IFNNLEEDNELSPEKLADQLFDNNLTARLNFVDQLKEVIPDKISFDEIDSSRQLKKFE
                     NQKLSLSNGIELIVPNAIYEDAESVEFIQNDNGTYSILIKNIEDIKSK"
     gene            8801..9400
                     /locus_tag="U1335_001001"
     CDS             8801..9400
                     /locus_tag="U1335_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme family protein"
                     /protein_id="HEM5231493.1"
                     /translation="MKKLIRTLILLLLIFLGYKFYQTYSAVKQVMTYQTMVQEVLAEN
                     DTPANEELVLAMIYTETKGQEADVMQSSESATGYANTITDSRESIRQGIIYLTENLRL
                     AEEKGVEVWTAVQAYNFGPAYIDYIAEHGGEHTLSLAKEYSRTVVAPSLGNTTEETYT
                     YFHPLALLNGGKLYVNGGNIYYARQVRFNMHLMRLINLF"
     gene            9501..10259
                     /locus_tag="U1335_001002"
     CDS             9501..10259
                     /locus_tag="U1335_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM5231494.1"
                     /translation="MKRNVLITGASSGIGKAIAYVFATNGDNIIITGRRLDKLEEIKQ
                     DIEKQYHVQVSVHSFDITNMEQTIVNCQKMLEEVGQIHILVNNAGLALGLDKFQDYDL
                     TDMMTMIDTNIKGLLTVTRQLLPQMVENNEGHIINIGSTAGIYTYAGAAVYAATKSAV
                     KVLSDGIRIDTIDKNIKVTTLQPGIVETDFSQVRFHGDKERAATVYQGIDALQANDIA
                     SCTLFVANQPAHVQISDMTIMATKQATGFTIHRD"
     gene            10276..11025
                     /locus_tag="U1335_001003"
     CDS             10276..11025
                     /locus_tag="U1335_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEM5231495.1"
                     /translation="MKRKYLALALGLLTIMSLSACQTEKKGSSASTSTADTQVSNANT
                     STSSTIQREISLSSMDIDALMQGNYDSILGTWQNSQGNSLVFNSKGLVADSQSLLGRG
                     KITDGIFETGYVDATIGDVTLLMIPKGTQANTTETDTTDSTRDRMIVISQETTADVVD
                     VYYRLTNSATSGIDPLKNTETGVQLDSGPKTIDYANSILGENNWRVIEGNYTRTESIP
                     YNILEGDDNARYTIYQNGVIINADYQIVYQP"
     gene            11047..11394
                     /locus_tag="U1335_001004"
     CDS             11047..11394
                     /locus_tag="U1335_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIRAN domain-containing protein"
                     /protein_id="HEM5231496.1"
                     /translation="MTFTSFEPTRNVQDFHLAAFAYYDGLDVIDQLKPGTPVQLVGEP
                     SNPHDSEAVAIFYQGTKLGYIPSDKNSLISRLIYFGHSDILEACIQMSNTENHPDRQF
                     RVVVKLKDTRKNG"
     gene            complement(11423..12370)
                     /locus_tag="U1335_001005"
     CDS             complement(11423..12370)
                     /locus_tag="U1335_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231497.1"
                     /translation="MDVFPSFFIFSFNKLNIFVDLKNIFCYTCVMKTSTLGKLLELPN
                     FHHFYTVPIRENTDSSGNYIIVFEQDKQPVFVDLKNETGHTREVRFASHFDSAGLLVG
                     LGAIPINYWPTCQILGVKKNNNRRGLSLSSLMDGYGRLPIFKEMAERYRARGQSTIYD
                     PYRYSYTIDEKKVIKDNQLTLIPKKEYEKIKDFHPFLQTKHGNVYAVPCFYQDRKRNQ
                     ITKIYIMGWYFYEKQLKISWKPSHSRKSRWRSSLVSVDKLSDRFFFQGELYKKGTYPV
                     FLEDLTIKNKAYQHRLDREFAAFLSIIEEQKQRAQLRVK"
     gene            complement(12398..13186)
                     /locus_tag="U1335_001006"
     CDS             complement(12398..13186)
                     /locus_tag="U1335_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231498.1"
                     /translation="MAVLKYSKVLLLVLLIATGLSCIGIYWLGKEQNRLLNEQWHALN
                     IRIINDLGTKIDAIGGPQNPRIIGFFQQDDTTAISQRIGTASEEELKIAKPDNLFQKE
                     WIVLYPQTRSSPFENTSAYAVMKTSIKADWLHVTTSSETELDIFYEKADESLLTLEDL
                     VQDKESFRTTLKTILVSAKNEAEIQVQKDILEMFESDDWSAIPFAYTEKSLILEKAVI
                     SISAFVDSLNPYYFSEQTLADLRLSEESRQALKDSVDKTIITYP"
BASE COUNT         4167 a         2664 c         2810 g         3803 t
ORIGIN      
        1 agagcagaca cctagtttct aggtgttttt cttatggcaa gttcttagga tttttgatat
       61 aataaagagt aatactcttg tagaggaaga aacatgaatt tagaagaatt gaaaaaacga
      121 caggagaaaa tccgtaattt ctccattatt gcccatattg accatggaaa atcaaccttg
      181 gctgaccgta ttcttgagaa gacagaaaca gtttccagcc gtgaaatgca agcccagttg
      241 ctggatagta tggacttgga acgcgagcgt ggtatcacaa ttaaactcaa cgcaatcgaa
      301 ctcaactata cagctaaaga tggagagaca tacattttcc acttgatcga cacaccagga
      361 cacgtggatt ttacctatga ggtatcgcgt tcgttggctg cctgtgaagg tgcgatcttg
      421 gtggtggacg ctgctcaagg gattgaagca cagaccttgg ctaacgttta tctagccttg
      481 gacaatgatt tggaaatctt gccaatcatt aacaagattg acctgccagc agcagaccca
      541 gagcgtgttc gtcaggaaat tgaagatgtg attggtttgg atgcttctga agcagtgcca
      601 acatcagcca aggcaggtat tggtatcgag gaaatcttgg agcagattgt ggagaaggtt
      661 ccagcaccga ctggtgatgt cgaagctcca ttgcaagcct tgatttttga ctcggtttac
      721 gatccgtatc gaggcgttat cctgcaagtt cgtattgtca acggtgtggt aaaacctggc
      781 gatactattc agatgatgag caatggcaag acctttgatg tgacggaagt aggtatcttc
      841 acaccaaaag caatcggtcg tgattacttg gcgactggtg atgttggtta cattgcagcc
      901 tccatcaaga cagttgccga cacccgtgtc ggtgatacgg tgaccttagc tgaaaatcct
      961 gctagtgagc cactagcggg ctacaagcag atgaacccaa tggtctttgc gggtatctat
     1021 ccaatcgatt ccaacaagta caatgacctt cgggaagcct tggaaaaact ccagctaaac
     1081 gatgccagct tgcagttcga acctgaaaca tcgcaggccc tcggctttgg tttccgatgt
     1141 ggattcttgg ggctcttgca catggatgtt atccaagaac gaattgagcg cgagtttaac
     1201 attgacctga tcatgacagc tccgtcggtg gtttaccatg tcaatatgac ggacggtgaa
     1261 atgattgatg tagccaaccc atccgaattc ccagacccaa ccaagatcgc cactatcgaa
     1321 gagccttacg ttaaggcaca aatcatggta ccacaggaat acgtcggtgc agtcatggaa
     1381 ttggctcaac gcaagcgtgg tgactttgtg actatggatt acatcgatga taatcgtgtc
     1441 aatgtcatct accaaattcc actggcggag attgtttttg acttctttga taagcttaag
     1501 tcatccactc gtggttatgc cagcttcgac tatgagattt ctgaataccg ttcatccaag
     1561 ttggtgaaaa tggatattct cctcaatggc gataaggtcg atgccctcag ctttatcgtc
     1621 cacaaggaat ttgcctacga acgtgggaaa attatcgtgg acaaactcaa gaaaatcatt
     1681 ccgcgtcaac agtttgaagt accaatacaa gcagctatcg gtcagaaaat tgttgcccgt
     1741 agcgacatca aggccctacg taaaaacgtt ttggccaagt gttatggtgg tgacgtttcc
     1801 cgtaaacgca aactcctaga aaaacaaaaa gctggtaaaa aacggatgaa ggccatcgga
     1861 tctgtcgaag ttccacaaga agccttcctc agcgttctca gcatggatga agacgataag
     1921 aaataatctt gatataaaga aacactcctg cattttgttg caagagtgtt ttctcttatt
     1981 tacgtttcat ttcgccttgg gggtagtagg ttccttctgg catatcgttg ataaagacat
     2041 gaatggcttc ttttggtgca ttggtattgc gtgatacaac ttcggtaact tcacgtgcta
     2101 aggcaatctt ttgttcttct gtgcgtcctt caaacaaatc aatacgtaca aatggcatat
     2161 atttcctcct ttattttgct agtttcagta tagcataaat ttcacctgct ttctacaagt
     2221 aaataattga catcgcttac aatttgtgct attctatacg aacattggag gtgttggctt
     2281 atgaactatg tttatcgtat ggtgttttca ttcctgcttg ccggtctgtt tttatatcta
     2341 gtgataactg ttttttacca aactatatgg gaaggcccct tgtttcttgc gttttccttc
     2401 ttcagcttaa tctatggatg cgtcatgcta tacaagtgga aaccaaaagc tgctaaaatt
     2461 atttttgagt gtgtcggaaa cttcttatca ttaccttggt cctaataaca aacaagctca
     2521 aatcgggctt gtttttctat ttcctaaatg gtcaaattat gataaaatgg aaggagtgaa
     2581 attttaagat tggaaagtga aaagtggctc aattatacta taaatatggg acgatgaatt
     2641 caggcaaaac cattgaaatt cttaaagttg cccataacta tgaagagcaa ggtaagcctg
     2701 ttgtcattat gacttctgct ctggacaccc gcgatgcctt tggtgttgtt tcaagtcgta
     2761 ttggtatgcg acgtgaagca gtagcaattg acgatgatat ggatatcttt ggttttattg
     2821 aaaaaatgga accgcgtcct tactgtgttc tcattgatga agcacaattt cttcgacgtc
     2881 atcacgttta tgacttggca cgagtggtag atgaattgga tgttccagtt atggctttcg
     2941 gtcttaaaaa tgatttccga aatgaactgt ttgaaggttc ccaacatttg ctcttattgg
     3001 ctgataaatt agatgaaatc aaaacaatct gccaatattg ttctaaaaaa gcgacaatgg
     3061 ttttgagaac acaggatgga aaacctactt atgaaggaga acaaatccaa attggtggca
     3121 atgaaaccta tattcctgtc tgtcgcaaac attatttttc accggagatt gaactgtaaa
     3181 ctaaggttct aaatcaaagg ctgaaggtac gatttttgaa aaaacgaaaa cggactacga
     3241 tgggttctgt gacaatacga acagaactga atacgcctac gactctgtgg aaatagatca
     3301 ttctttctag aaccgaagtt tctatgtcag aattcctaat ttcctttgag tcgcttaacg
     3361 gcattaatat cttaatggaa ttgaacacgc cctacaagct aaatggaagt gtgttcggtc
     3421 aaatttttag aaaggaactg aattcgggct acgaactgtg cctgtttcat gacctacata
     3481 ttatagaagg gaaatgaaca cgccctacaa gctgtgtcaa aaagataatt tctccaagtg
     3541 tttgtaacac ttggtcaaaa ttcctatttt gactgtgctt gcttaacggg ctttgtatct
     3601 taatcttatg aacatctacg atcaattaca ggcggtggaa gaccgctacg aggaacttgg
     3661 tgaactgttg tctgacccag atgtagtcag cgataccaag cgttttatgg agttgtctaa
     3721 ggaagaagcg gcaactcgtg acacagtaac agcctaccgc gaatataaga ctgtacttca
     3781 aaacattatc gatgcagaag agatgattaa agaatcttct ggtgatgctg acttggagga
     3841 aatggctaag gaagaactca aacaagctaa ggctgataaa gaggcttacg aagaaaagct
     3901 gaaaatcctt cttttaccaa aagaccctaa tgatgataaa aacatcatct tggaaatccg
     3961 tggtgccgcg ggtggtgatg aagcagccct ctttgcaggc gacctcttga ccatgtatca
     4021 aaagtatgca gaaggtcaag gctggcgttt tgaagtcatg gaggcttctt ataatggtgt
     4081 cggcggtatc aaggaagtgg ttgccatggt ctctggtcaa tccgtttatt caaaactcaa
     4141 gtatgaatca ggagctcacc gtgtccaacg tgtccctgtg acagaaagcc aaggtcgtgt
     4201 ccacacctca acagcaaccg ttctgatcat gccagaagtt gaagaagtgg aatatgacat
     4261 cgatccaaaa gatcttcgtg tcgatattta ccacgcatct ggtgctggtg gacagaacgt
     4321 caacaaggtt gcgactgccg tgcgtattgt tcacttgcca acaaacatca aggtagagat
     4381 gcaggaagaa cgaacccagc agaaaaaccg tgaaaaggct atgaagatta tccgtgcccg
     4441 tgttgcggat cactttgcac agattgccca agatgagcag gatgctgagc gtaaatcaac
     4501 tatcggtaca ggtgaccgtt cagagcgtat ccgtacctac aacttcccac aaaaccgtgt
     4561 gacagaccac cgtatcggct taaccttgca aaagctggat accatcttgt ctggtaagat
     4621 ggacgaagtt gtcgatgccc ttgtactcta cgatcaaacg caaaaactag aagagcttaa
     4681 caaataatga attacgctca attatttgca gcatacgaag aacaattagt cgcaatcggt
     4741 gaagaggcag aatccctgtc cttcaccttt cgtggcttaa agggattgaa ctttacggaa
     4801 tttctccacc tgctccgtca ggaagttaca ccgactgaca aagaagagat tgatgcgatt
     4861 tttcagcaac tttcccagca ccgacctgcc cagtacatta tcggcaaggc tgattttcat
     4921 ggcttggagt ttgcggtgga tgagcgagtc ttgattccaa gacctgaaac ggaagagttg
     4981 gttgatttaa ttttacaaga aaatagcgga gcaggtttgc gtatcttaga catcggtaca
     5041 ggaagcggtg ccatagctat ttcccttgca aaagctagac ctgattggga agtggtagcg
     5101 gttgatattt caaaggatgc cctagcagtg gctcaggaaa atgcaagaaa caatcaagta
     5161 tctgtccact ttctagaatc ggatgtcttg caagcagtga cagggcaatt tgacatcatt
     5221 gtttctaatc cgccctacat ctcaccagat gacacagacg aagttggact caatgtattg
     5281 acttctgagc ctcatcttgc cttatttgcg gaagaagatg gcatggctat ctatagacaa
     5341 attgcggagc aagcaggggc atttttgaag gaaaaaggaa aactctactt tgaaattggc
     5401 tacaagcaag ggcaagacct aaccgactta ctcgctctgc atttccccaa aaagcgaatt
     5461 cgagtcctca aagatcaatt tggacaggat agaaaggtca tagcggatga caatggataa
     5521 actccgaaca attcttgaaa atggtggtgc tgttatcctt ccaactgaaa cagtctatgg
     5581 gctttttgca caagccttga atgaagatgc agtcaatcgt gtctatcagt tgaaacagcg
     5641 tccgagggac aaggcaatga acttaaatgt ctcaaatctg aacgatattt attttttcag
     5701 tcaaaataca ccattttttc tggagaaatt gtataataga tttatgccgg gaccactaac
     5761 gattatcctg aaagcgaacg aaaaagttcc tttttgggtt aattctggac tggatactgt
     5821 tggttttcgt cttcccaatc acgaacaaac cttacgtttg atttcagaga ctggcccact
     5881 tattggaccg tccgccaata tttcaggaaa tgaaagtggt aagaagtttt cggacatcca
     5941 ggcacaattt ccagttgatt tgcctggcat tgaggatgac caagctctga caggcattga
     6001 ttcaacgatt ttggaccttt ctggacagaa agcgcggatt ttgcgccaag gtgctatcag
     6061 ccgcgaagag attcagaaag ccattcccga aatagaattt gaggtagttt tatgattcgt
     6121 cccattgaga aagatgactt ggtagtcatc cgagaaatca atgctcaatc cttagggtat
     6181 gattgttcat tggaacaaac tgagcgacaa ttttttagat gcacgagtac attggggcat
     6241 atcttgttgg tctatataga tgacataagt ggcgcagtgc aaggttacat tcacgcacaa
     6301 gtctatgaaa gtctctattc ggatacaggc ctcaatattc tcggactagc tgttttgcct
     6361 ggtcatcaag gacaagggat tggagcaagc ctgctgaaag ccgttgagca aattgcacag
     6421 aaagagggct accattttat tcgcctcaat tctgctgaaa gtcgtctcca agcccatctt
     6481 ttctacgaaa agaatggcta tcactccgat aaaatgcaga agcgttttat caagcacatt
     6541 tagcccaata caaaggagta ccgtatatga tttttgacaa agttaactac aaagaatttg
     6601 ataaagaagt ttgggaagct atccaagctg aagaaaaacg ccaacaaaat aatatcgaat
     6661 tgattgcgtc tgaaaacgtt gtttctaaag ctgttatggc agctcaaggt tctattttga
     6721 ccaataaata cgcagaaggt tacccaggtc gtcgttacta tggcggtacg gaatgcgttg
     6781 acgtagttga aagtttagct attgaacgtg ctaaagaaat attcggtgca aaatttgcta
     6841 acgttcagcc acactcagga agccaggcca attgtgctgc ctacatggcc ttgattgagc
     6901 caggagacac tgttatgggg atggacttag ctgcaggtgg tcacttaact cacggtgcat
     6961 cagttagctt ctcgggacaa acttacaact ttgtagctta caatgttgac gaagaaactg
     7021 gcttgcttga ttacgatgca attttaaaac aagcaaaaga agtacagcca aaattgattg
     7081 tagcaggtgc ttcagcctat gcccgtacaa ttgactttgc taaattccgc gaaattgcag
     7141 atgcagtggg tgccaaactg atggtggata tggctcatat tgctggtctt gtagcagcag
     7201 gtcttcatcc gaacccagtg ccacatgccc atattacaac aactacgact cataaaactc
     7261 ttcgtgggcc acgtggtggt ttgattttga ccaatgatga agagctcatc aagaaaatca
     7321 actcagccat cttcccaggc atccaaggtg gtccattaga gcatgtcatt gctgcaaaag
     7381 ccgtatcttt caaagaagtt ttggacccag ctttcaaaga ctatgctcag aaagtgattg
     7441 agaacagcaa ggccatggcc gaagtcttcc ttgcaaaccc taactttaaa gtcatcgcag
     7501 gaggaacaga caaccatctc ttcctcgttg acgtgaccaa agttgttgaa aatggtaaag
     7561 ttgctcagca tctcttggat gaagtaaata ttactctcaa taaaaactca attccttacg
     7621 aaaaactctc accattcaaa acaagcggta tccgtattgg ctctgcggcc attactgctc
     7681 gcggttttgg agtagaggaa gctcgcaagg ttgcacaact aactatcaaa gcacttgaaa
     7741 atgcagaaaa tgaaaccgct cttgaggaag tccgtcaaga agtgcgtgct ttgacagatc
     7801 aattcccact ttacgaaggt ttataatgga tatatttgta aaaaaagcca tcatacatca
     7861 atttagtcct gatgatacag agctggtcct tgccgaccag cttttgactg ttagcccaaa
     7921 aatagaagaa tatttgcgta aaaagattga acgtgtcttt tctgatgaag caaaaacagg
     7981 acaatttaac cccgacaatc cttttcttga ctatttagat ggtgacctac tgaccaactc
     8041 tgtcaagatt gccaatctct ggaaagaaga attttcaatt tctgagaatt taaaaaccaa
     8101 tgacctcatt ttcatagagt ttgaacgaaa tggtgttgaa cattttgcct ttttgagaat
     8161 ctcactgcgt gaaaatctcg cccacgttgg tctggaaagc ggaagtcctt taaaaatcac
     8221 ccagaataat ttacctggag caggttcagc acctgatgaa gccttgattg tcaatcttca
     8281 aacgcggaag tatcatttga ttgagaaaag aatcaaacac aatggagcct tcctcaatta
     8341 tttctcagat aatcttctgc aagttacacc agctatttct gcaaaaaaat caatcaaagc
     8401 agtagagcaa actgcacaga agattgctga caatttccat caaggcgatt ttcaatttca
     8461 atcgaaagtc aagtcagcta ttttcaacaa tttggaagaa gataatgagc tttcacctga
     8521 aaaattggct gatcagttat tcgataacaa cctgaccgct cgtttaaatt tcgtcgatca
     8581 actgaaagag gtcatacctg ataagatttc cttcgatgaa atcgatagta gccgtcaact
     8641 taagaaattt gaaaatcaga agctatcttt atcaaacgga attgagttga ttgtgccaaa
     8701 tgcaatctat gaggatgcag aatcggttga gtttattcaa aatgacaacg ggacctattc
     8761 tattcttatc aaaaatattg aagacataaa gagcaagtaa atgaaaaaac tgatacgtac
     8821 gctgatactt cttttgctga tttttctcgg ttacaaattc tatcaaacct acagtgcagt
     8881 caagcaagtg atgacctatc aaactatggt acaagaagta ttggcagaaa acgacacacc
     8941 agctaatgaa gaactagtcc tagcaatgat ttacacagaa accaagggac aagaagcaga
     9001 tgtcatgcaa tcaagtgagt ccgctactgg ctatgctaac actatcacgg atagtagaga
     9061 gagtatcagg caaggaatta tctacctaac agaaaaccta cggttggctg aggaaaaagg
     9121 agtagaggtt tggacagcag ttcaggcata taatttcggt ccagcctata ttgactatat
     9181 tgctgagcat ggtggagaac atacactctc tttagctaaa gaatactcca gaacagtagt
     9241 agcaccaagc ttagggaata ctacagaaga aacatatacc tattttcatc ccttggcttt
     9301 gctaaatggc gggaagttat atgtaaatgg tggaaatatc tactatgcta gacaggttcg
     9361 ttttaatatg cacctgatgc gcctcattaa tttattttaa tacctatcaa actcatcgga
     9421 aatctgatga gtttttaact acagcatttt tacaaactag gtaaaattgt agtataataa
     9481 agagaatagg agacagagtg atgaaacgaa atgtattgat tacaggtgca agtagtggta
     9541 ttggcaaagc aatcgcttat gtgtttgcta ctaatggtga taatatcatc attacaggac
     9601 gaagattgga caaactagaa gaaattaagc aagatattga aaagcaatac catgttcagg
     9661 tatcagttca ttcatttgat attacgaata tggaacaaac gattgtaaat tgtcaaaaaa
     9721 tgttagaaga agttggacaa attcatattt tggtaaacaa tgctggcctg gcattgggat
     9781 tggacaaatt ccaagactat gatttgactg acatgatgac aatgattgat accaatatta
     9841 aaggattact aactgtgaca cgtcagttat tgccacaaat ggttgaaaat aatgagggtc
     9901 atattatcaa tattggatca acggccggta tttacaccta tgcaggagct gctgtctatg
     9961 ctgcaaccaa atcagctgtc aaggtgcttt cagacgggat ccgtattgac acgattgata
    10021 aaaatatcaa ggtaactacg ttacaacccg gtatcgttga gactgatttt agccaagtcc
    10081 gttttcatgg agataaagag agagcagcga cagtctatca aggaattgat gctcttcaag
    10141 caaatgatat tgccagctgt actctatttg ttgcaaatca acctgcacac gtacagattt
    10201 ctgatatgac cattatggca accaaacagg caactggctt tactattcat agagattaga
    10261 ggggagatag ctagaatgaa aagaaaatat ttagcactcg ctcttggctt gctcactatc
    10321 atgtcgcttt ctgcctgtca aactgaaaag aagggcagtt ccgcaagtac ctcaactgct
    10381 gatacccagg tttctaatgc caatacaagc acgtcatcaa caatccaacg tgagatttct
    10441 cttagttcta tggatataga tgctctaatg caaggcaatt acgatagtat actaggcacc
    10501 tggcaaaata gccaaggaaa ttcactagtc ttcaatagca aaggattagt agcagatagc
    10561 cagtccttac ttggccgcgg aaaaataact gacggaattt ttgaaacagg ctatgtagac
    10621 gcaacgattg gcgatgtaac actattaatg attcccaaag gaacacaagc aaatacaact
    10681 gagacagaca ctactgactc tacgcgcgat agaatgattg taataagcca agaaacaaca
    10741 gcagacgtgg tagatgtcta ttatcgcttg accaattcag ctactagcgg gatagaccca
    10801 ttaaaaaata ctgaaacagg cgtccagttg gatagtggac caaaaacgat tgattatgcc
    10861 aactcaattt taggcgaaaa caactggcgc gtcattgaag gaaactacac gcgcaccgaa
    10921 tctattcctt ataatatttt ggaaggcgat gataatgccc gttacactat ttaccaaaac
    10981 ggtgttatta tcaatgcaga ttatcaaatt gtttatcaac cataatgatt ctctaggagg
    11041 ttagacatga cattcacatc atttgaacca acacgcaatg ttcaagattt tcatttggca
    11101 gcctttgcct actatgatgg actagatgta atcgaccaac tcaagccagg aacacctgtt
    11161 cagctagtcg gagaaccttc aaacccacat gactcagagg ctgtagcaat cttttatcag
    11221 ggcacaaagt taggatatat cccatcggat aaaaactcac taatcagtcg gttaatctat
    11281 tttggacaca gcgatattct agaggcatgt attcagatgt ccaatacaga aaatcatcct
    11341 gatcgccagt ttcgagtcgt tgtaaaacta aaagatactc gtaagaatgg ttaggtcggt
    11401 aatttcccaa cctacccatt ttctatttaa cacggagctg tgctctctgt ttttgttctt
    11461 caataatgct taaaaaggct gcaaactccc tatccaggcg atgttggtag gccttatttt
    11521 ttattgtgag atcttccagg aacactggat aggttccttt tttatacaat tctccttgaa
    11581 agaagaagcg gtccgataat ttatcaactg aaacaagaga agaacgccag cggcttttac
    11641 gagaatgaga aggtttccaa gatattttta attgcttctc ataaaagtac cagcccataa
    11701 tatagatttt agtaatctga tttcgttttc tgtcttgata gaaacaagga actgcataaa
    11761 catttccatg ctttgtttgc aaaaaaggat ggaaatcttt tatcttttcg tattctttct
    11821 ttggaataag ggttaattga ttatccttaa taaccttctt ttcatcaata gtatatgaat
    11881 aacggtaggg gtcataaatg gttgattgtc cacgcgctct ataacgctct gccatttcct
    11941 taaaaatagg tagacgtcca taaccatcca tcagactaga tagactaagt cctcgtcgat
    12001 tattattttt cttcacacca agaatctggc aggtaggcca ataattgata ggaatggctc
    12061 ctaatccgac cagaagaccg gcgctgtcaa aatgactggc aaagcgtacc tcacgagtgt
    12121 gaccagtctc atttttcaaa tcaacaaata caggttgctt gtcctgttca aaaacaatta
    12181 tataatttcc agaagagtcc gtattttctc taattggaac ggtgtagaag tggtgaaaat
    12241 ttggtaattc tagtagcttt ccaagtgttg atgttttcat aacacaagta taacaaaaaa
    12301 tatttttcaa atccacaaaa atgtttaatt tgttaaacga aaatataaag aagctgggaa
    12361 agacatccat gacgactttc ccactcccac cgtttattca aggataggtg ataattgtct
    12421 tatctaccga atcttttaaa gcctggcgcg attcttctga taaacgcaaa tctgcaaggg
    12481 tttgttctga aaaatagtag ggatttagac tatctacaaa tgcagaaatt gaaatgacag
    12541 ctttctccaa tatcagagat ttttcagtgt aagcaaaggg aatagccgac caatcatcac
    12601 tctcgaacat ttctaaaata tctttttgaa cttgaatttc agcctcattt ttagctgaaa
    12661 ctaagattgt ttttagtgta gtacgaaaac tttccttgtc ttgcaccaag tcttccaagg
    12721 tcagcaagct ttcatctgcc ttctcataaa aaatatctaa ttccgtctct gacgaagtag
    12781 tcacatggag ccagtcagcc ttgatactgg ttttcattac tgcataggca gaagtatttt
    12841 caaagggact gctgcgcgtt tgaggataga gaacaatcca ctctttctgg aatagattgt
    12901 caggtttagc tattttcagt tcctcctcag aagctgtacc aatccgctgg ctgatagcag
    12961 tagtgtcatc ttgctgaaag aatccaatga tacgcggatt ttgcggaccg ccaatggcat
    13021 caatttttgt tcccagatca ttaataatgc gtatgttcaa ggcatgccac tgctcattta
    13081 atagtctatt ttgctctttt ccgagccagt agattccgat acaagataga ccagtggcaa
    13141 taagcaagac aagtaacagc actttcgagt atttcaacac agccatcaca cctttctaaa
    13201 acgttttcag tcatatatta tcatataaaa atataaaaag caactatttt taggtaccac
    13261 attaaacggt tacacaagta tataaattct aagtttacga caggaaaggc cttagttagc
    13321 atataaatac tagctaaagc cttttttgta cttttctatc cttattggag agattttatc
    13381 atcagtagaa tgatttcttc cagttcttca cgtttcttga ttggaagttt gtttaactcg
    13441 ttca
//
LOCUS       DASGAC010000045        13107 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.045, whole genome shotgun sequence.
ACCESSION   DASGAC010000045 DASGAC010000000
VERSION     DASGAC010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 13107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13107
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.045"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            119..421
                     /locus_tag="U1335_001007"
     CDS             119..421
                     /locus_tag="U1335_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001833634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HEM5231499.1"
                     /translation="MKIEQIIQDYYSTEFNQDSIDYYRFITHVKLFAHRLVEGNEYHD
                     EDDVDLLELMKKKYPREYQCGTRVADFIRLEYDYLLSPSELVYLIAHIRRLTKNLS"
     gene            432..2273
                     /locus_tag="U1335_001008"
     CDS             432..2273
                     /locus_tag="U1335_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM5231500.1"
                     /translation="MKYKNTALAILEAVGGEKNVLRATHCVTRLRLELKDENIVSDER
                     VKSISGVIGIMKKNGQYQIILGNDVANYYKEFTALGKFDSDSVQQVKKANVLEQVIEY
                     IAGSMTPLIPAMLGGGMIKVLVIVLPMLGLLKADSQSISFLAFFGDAPYHFMPIFLAY
                     SASQKLKVTPALAMSVAGILLHPNFVQMVSSGDPLHFLGAPVTPASYGSSVIPILIMV
                     WLMKYIEAVFNKVTPAVTKSFLQPTLVLLVSGFIALVLVGPLGVIVGEGLSQLVEQMH
                     GVAGWLTLAVLGAIMPFIVMTGMHWAFAPIFLAASIAIPDVLILPAMLGSNLAQGAAS
                     MAVAFKSKNSNTKQIAFAAGFSALFAGVTEPALYGVTLKYKKPLYAAMIGGGLAGLFV
                     GLTGVKAYLFAVPSLIALPQFIYSEAASNITNAMIAAAISIIITFILAYFLGIDEETS
                     TVNLEKVAPGISSRKNVFSPLSGKILPLEKVNDATFSKKMLGEGVAIIPKDGKVYAPF
                     DGAVTSLFPTKHAIGLTSDEGVELLIHFGLETVELKGRGFVSHVSDGEKVEKGQLMLE
                     VDVEMLVAEGYDIVTPVVVTNTQEYLDVLLLSTKEEVNYADDLLAVL"
     gene            2288..3712
                     /locus_tag="U1335_001009"
     CDS             2288..3712
                     /locus_tag="U1335_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM5231501.1"
                     /translation="MSIFPDNFLWGGAVAANQVEGAYNEGGKGLSVQDVLPNGGLGEA
                     TQEPTEDNLKLKAIDFYHRYKEDIALFSELGFKVFRTSIAWSRIFPNGDEEFPNEEGL
                     QFYDELFDELLKNGIEPLVTLSHYETPLYLARKYHGWVDRKMIQFFEKFARTVFERYK
                     DKVKYWLTFNEVNSILELPFTSGGIDLPNEELSKQDLYQAIHHELVASSLVTKIAHEI
                     IPDCKVGCMVLAMPTYPMTPNPEDVWAAHAYENLNYLFSDIHVRGYYPNYAKRYFKEN
                     GIKITFMEGDEELLKNNTVDFLSFSYYMSITQAADPSKYSSGKGNILGGLVNPYLEAS
                     DWGWQIDPIGLRLTLNRYYDRYQIPLFIVENGLGAKDQLVKDEAGGLTVHDDYRIQYM
                     QEHLLQVAEAIQDGVEVMGYTSWGCIDCVSMSTAQLSKRYGLIYVDRNDDGSGSLTRY
                     RKKSFYWYKEVIQSNGSILGNSSK"
     gene            4370..5371
                     /locus_tag="U1335_001010"
     CDS             4370..5371
                     /locus_tag="U1335_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5231502.1"
                     /translation="MLKNKNLLATIVALTVMVVAALFLTQKEQSNSTNSTEKVKIGVL
                     QFVTHDSLDEIYKGIKAGLKEGGYTTTDNLEIDFMNAEGDQSQVQTMSKKLVDNGNEL
                     LIGIATPAAQGLANATTELPIIMGAVTDPVGANLVKDLKHPGGNITGVSDQTPVADAV
                     SLIKEITPEAKTIGVLYSSNEDNSKIQVAEFKAAAEEAGYTVLEYAVASSNEIAATVE
                     VASSKADVLFTPVDNTVASAFSTVVSVANKTKTPIFTSVEDMVEGGGIASVTLSQYDL
                     GVATGKMAAKILDGANPADTPVQIFNEGTVVVNQKVAKELGITLSDDVISKASKVIE"
     gene            5393..6259
                     /locus_tag="U1335_001011"
     CDS             5393..6259
                     /locus_tag="U1335_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5231503.1"
                     /translation="MIVSTVSQALLWAVLGLGIFVTFRILNFPDMTTEGSFPLGGAVA
                     VTLLTQGVHPILATLAAVLVGCLAGFVTGLLYTKGKIPTLLAGILVMSSCHSVILFIM
                     GRANLGLLNTKRLQDFLPFSEQINGLLLGLGSLAVVIGALMFFLYTRLGQAFIATGDN
                     PDMARSFGINTSRMELLGLVLSNGVIALAGALIAQQEGYADVSRGIGVIVVGMASLII
                     GEVIYGNLTMLERFLAIVVGAIFYQFLILVVISLGINTSYLRIFSAMILATCLMVPEL
                     KNKLLKGASLSR"
     gene            6256..7014
                     /locus_tag="U1335_001012"
     CDS             6256..7014
                     /locus_tag="U1335_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231504.1"
                     /translation="MKAIVELKNATKVVTNGFDEERVILDNVNLTIYQGDFITILGGN
                     GAGKSTLFNVIAGTLPLTSGSVHILGEDVTNWPAEKRAKYLARVFQDPKMGTAPRMTV
                     AENLLIAKYRGEGRGLVPRRLAQQTEEFAQLLPRVGNGLEKHLDTPAGLLSGGQRQAL
                     SLLMASLKQPELLLLDEHTAALDPKTSQSLMQLTDELIETKGMTALMVTHQMEDALRH
                     GNRLIVMKNGQIIQDQTAEEKSKMKLEDYYKLFD"
     gene            7197..7682
                     /locus_tag="U1335_001013"
     CDS             7197..7682
                     /locus_tag="U1335_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl-tRNA synthetase associated
                     domain-containing protein"
                     /protein_id="HEM5231505.1"
                     /translation="MDKLVFKTLADLGMDYTIVEHPPARTTEEADRYIEGLEGVRTKS
                     MFLTNKKKTAYYLLIMDDNKQLDMDQFRDLVGANRIRMASSESLMEKIHLPAGAVSVF
                     GLLHNVDKDIQVFFDKEILSEPILTFHPNVNTKTIFVKTEDVLRFVEEIGFSAMIVDL
                     G"
     gene            7688..8092
                     /locus_tag="U1335_001014"
     CDS             7688..8092
                     /locus_tag="U1335_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231506.1"
                     /translation="MRKCLAIFSLLCCLFLVGCRTRAAYQAEIEPMEQSELYTEKEIE
                     AAILVVQDYFDHHFNSCKLLTIGYSGDNEKEFDEWAEHYGAEEAIILTSSFKVAAEGA
                     EPTLEPNSTHTDWKWILVRNVGGKWEHKGHGY"
     gene            8486..10147
                     /locus_tag="U1335_001015"
     CDS             8486..10147
                     /locus_tag="U1335_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018371225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEM5231507.1"
                     /translation="MSSIKIMALGGVRENGKNLYIAEVNEHIFVLDAGAKYPENEQLG
                     VDVVVPNFDYLEENKHRVAGVFLSHGHADAIGALPYLLEKVKVPVFGSHLTIELAKLL
                     VKGNNATKKFNDFHVINAETEIDFGDSVVSFFQTTHSIPESLGIVVKTDEGNIVYTGD
                     FKFDQAADKFYRTDFGRLAEIGNEGVLALLSDSANADSNVQVASMHEAGEEILNTIAD
                     CDGRVIVAAVASNIVRIQQIFDAAEATGRRVVLTGHDVENIVRTAIQLKKLRLVSERL
                     LVKPKDMNKYEDHELIILETGRMGEPLNGLRKMSIGRHRYVEIKEGDLVYIVTTPSIS
                     KEAVVARVENLIYKAGGTVKSITKKLRVSGHGNARDLQLMLNIMKPKYLFPVQGEYRQ
                     LDAHAKAALEIGMYPENIIIVKRGDVMAFEEGDFVHSGAVPAGDVMIDGNAMGDVGNI
                     VLRDRKILSEDGIFIVAITVNRREKKIISKAKVNTRGFVYVKKSKDILREASELVNTT
                     VENYFTKDSFDWTELKSAVRDDLAKFLFDQTKRRPAILPVIMEVK"
     gene            10316..11092
                     /locus_tag="U1335_001016"
     CDS             10316..11092
                     /locus_tag="U1335_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000863793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HEM5231508.1"
                     /translation="MAIMKIEYHSEALDMSRQVTVLYPDRNRVENPDDNDIPVLYLLH
                     GMGGNQDSWLNRSTVERLVRYTNLIVVMVNTDKGWYTNTTYGMNYFDAIAVELPQILK
                     RFFPNMSDKREKNFIAGLSMGGYGTFKIAMMTNRFSHAASLSGALYFDFDNPATAELG
                     SLSYWRGVFGDISDKQNPNNLLEIAKQSDKKTKFYAWCGEEDFLFEGHQKAVGELKEL
                     GFDIEASFGPGKHEWYYWNQQIEKVLAWLPIDFKLEERLS"
     gene            11158..11694
                     /locus_tag="U1335_001017"
                     /pseudo
     CDS             11158..11694
                     /locus_tag="U1335_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736142.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protease"
     gene            11982..12119
                     /locus_tag="U1335_001018"
                     /pseudo
     CDS             11982..12119
                     /locus_tag="U1335_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736142.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="matrixin family metalloprotease"
     gene            12130..12498
                     /locus_tag="U1335_001019"
     CDS             12130..12498
                     /locus_tag="U1335_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231509.1"
                     /translation="MFRTITNTIKRYPEQALLFLYNAGIFAWMQSTSHSIMEQIGIDS
                     SWFDKIPEPIKAWTGASLESMQTLLNSSAWGWLIVSMILMLVIRFVKGLIKFVIMLII
                     IGGGLYLLWQNKELLSGLKV"
BASE COUNT         3893 a         2254 c         2996 g         3964 t
ORIGIN      
        1 aaaaaaagat ttacatgtcg aactcccagt tgatgaagca gccttcatcg ctttgcattt
       61 tgtcaatgcg aatttggaaa atatttttca agaatcttat cgtattactg gaattatcat
      121 gaagattgaa caaattattc aagactatta ttctacagaa ttcaatcaag attctattga
      181 ttactaccga ttcatcacac atgttaaatt gtttgctcat cgtttggtag aggggaatga
      241 ataccatgat gaagatgatg tggatctttt agagttaatg aaaaagaagt atccaagaga
      301 gtaccaatgt ggaactcgag tagcggactt tattcggtta gaatatgatt atctactgag
      361 tccaagtgaa ctagtctatt taattgctca cattcggcgt ttaacaaaaa atttatcata
      421 aggagtctat tatgaagtac aagaatactg cattggcaat cctagaggca gtcggaggag
      481 aaaagaatgt tcttcgtgca acccattgcg ttactagatt gcgactggaa ctgaaagatg
      541 agaatatcgt gtccgatgaa cgtgttaaat ccatttccgg agtcattggc attatgaaaa
      601 aaaatggaca atatcaaatc atcttaggta atgatgtagc taattactat aaagaattta
      661 ctgcattagg aaaatttgat tctgattcag ttcaacaggt taaaaaagca aatgtcttag
      721 aacaagtcat cgagtatatc gctggctcta tgacaccact tattccagct atgcttggtg
      781 gaggtatgat aaaagtttta gtcattgtct taccgatgtt ggggctttta aaagctgatt
      841 cccaatctat ttcattttta gccttttttg gagatgcacc atatcacttt atgccgattt
      901 ttttggccta ctcagcttca caaaaactca aagttacacc tgctttagcc atgtcggttg
      961 ctggtatttt gctacatcct aattttgttc aaatggtatc ttcaggtgat ccacttcatt
     1021 ttttaggtgc ccctgttaca cctgctagct atggttcatc agttattcca attcttatta
     1081 tggtttggct catgaagtat attgaagctg tttttaacaa ggtcactcca gctgtaacga
     1141 aaagtttctt acagccaacc ttggtcctgc ttgtttcagg tttcatagct ttagttcttg
     1201 ttggacctct cggcgttatt gttggtgaag gattatcgca attggttgaa caaatgcatg
     1261 gtgtagctgg ttggttaact ttagcagttc ttggagcaat catgccattt atcgttatga
     1321 ccggtatgca ctgggctttt gcaccgattt tcttggcagc ttcaatcgcg atacctgatg
     1381 tactgattct accagcgatg ttaggttcta acttggcaca aggtgccgct tctatggcag
     1441 ttgcatttaa gagtaaaaat agtaacacga aacaaatagc ctttgcagct ggattttcag
     1501 ctttatttgc tggtgtcact gagcctgctt tatatggtgt tactctaaag tataaaaaac
     1561 cattgtatgc agcaatgatt ggtggtggtc tagcaggatt atttgttggt ttaacaggcg
     1621 taaaagcata cctttttgca gtaccttctc tcattgcttt gccacaattt atttactctg
     1681 aagcagcttc aaacattact aacgctatga ttgctgcggc aatttcaatt attatcacat
     1741 ttattttggc ctatttccta ggtatcgatg aagaaacgtc aacagttaat ttagaaaaag
     1801 tagcacctgg catttcaagt agaaaaaatg tcttctctcc tctttctggt aaaattctcc
     1861 ctttagaaaa agtaaatgat gcaacatttt caaaaaaaat gcttggagaa ggagttgcaa
     1921 ttatccctaa ggatggaaaa gtctatgctc catttgacgg ggctgttacc agtctttttc
     1981 caacaaaaca tgcaatcggt ttaacaagtg atgaaggggt agagttgctt atccactttg
     2041 gattagaaac tgtcgagcta aaaggaagag gttttgtaag ccatgtttca gatggggaaa
     2101 aagttgaaaa gggtcaactg atgctggaag tggatgtaga aatgcttgtc gcagaagggt
     2161 acgatatagt gactcctgta gttgttacaa atacacagga atatctggat gttctcttgc
     2221 tttcgacaaa agaggaagtc aactatgctg atgatttatt agcagtctta taattcgagg
     2281 agggtatatg tcaatttttc cagacaattt cttatgggga ggagcagtag ctgcaaacca
     2341 agtagaaggt gcatataatg agggaggaaa aggattatcc gttcaagatg ttctccctaa
     2401 tggtggactg ggtgaagcta cccaagaacc aacagaagat aatttgaaat taaaagctat
     2461 tgatttttac catcgataca aggaagatat agccctgttt tcagagttgg gatttaaggt
     2521 atttagaaca tcaattgctt ggagtagaat atttccgaat ggagatgaag aatttccaaa
     2581 tgaagaaggg ctacagtttt atgatgaact ttttgatgaa cttctaaaga atggtataga
     2641 gcctcttgta actctttctc actatgaaac tcccctgtat ctggcaagga aatatcatgg
     2701 ctgggtggat agaaaaatga ttcaattttt tgaaaaattt gcccgtacag tttttgagag
     2761 atacaaagat aaggttaagt actggctgac atttaacgag gtcaattcta tcttagaact
     2821 gccttttaca agtggtggaa ttgacttgcc gaatgaagaa ctttcaaaac aagatttata
     2881 tcaggccatt caccatgaac ttgtagcttc tagtcttgtt accaaaattg ctcatgaaat
     2941 tattcctgac tgtaaggttg gctgtatggt cttagctatg ccgacctatc caatgacacc
     3001 caatcctgaa gatgtttggg cggctcatgc ctatgaaaat ttgaactatt tattttcgga
     3061 tatacatgtt agaggatatt atcctaatta tgccaaaaga tactttaaag aaaatggcat
     3121 aaagattact ttcatggaag gtgatgaaga gttattgaaa aataatacgg ttgattttct
     3181 ctccttcagt tattatatga gtattactca ggcagcagat ccatcaaaat attcatctgg
     3241 aaaaggaaat atcttgggtg gtttggtcaa tccttattta gaagcttctg attggggttg
     3301 gcagattgat ccaattggtt taagattgac actaaatcgt tattatgatc gataccagat
     3361 tcctttattc attgttgaaa atggtttggg agctaaagat cagctagtaa aggatgaggc
     3421 tggtggttta actgttcatg acgattatcg aattcaatat atgcaagaac accttttaca
     3481 agttgcggag gcgatacagg atggcgtaga agtcatgggt tatacttctt ggggctgtat
     3541 tgattgtgta tctatgtcta ccgcacaatt atctaaaaga tatggactaa tttatgttga
     3601 tagaaatgat gatggaagcg gtagtctaac tagatataga aagaaatcat tttactggta
     3661 taaagaagtt attcaatcca atggcagtat cctgggcaat agctcaaaat agactcttaa
     3721 ggtattaaaa aattttcaga aaatttaatc aaaagtattg acaaagtgat tttgataccg
     3781 tataatcatc tgtaatcaga agaagtagta aagcagaagt cttcagggag cctgtggtac
     3841 tgggaacggg tggcggagtt ttatgaaatg ggctgatgtg catttatgtc tattttatga
     3901 cctaaattca caaggattgt ttggtatgac ttactttgcg tagactgttt tggttgagta
     3961 cgaggcaggt cgacgcagct tatactagcg gtatagcaag gagagctaac gaagtaatca
     4021 gccaaaacag tcatgcaaat gaacttaaaa caatgatagt tcggtcggca caccttacag
     4081 tgcaactcct tgttagagga gatgagatat gggaggattc tagacaattc ccataagtga
     4141 ggtggcaccg tgtcattgac gccctcgcat actgtttttc agtatgcggg ggctttttcc
     4201 ttgtctttgt agattgtcgt tcaattgaaa aaatgagata ccgatcatta tattctactt
     4261 tgacaatgat agaaattacg aggtaatcat gatgaaacga tggcgatggt ggaataaggt
     4321 attgatgacg tagaaattgt atattgtgta ttttacgagg agaatgaata tgttgaaaaa
     4381 taaaaattta cttgctacaa ttgttgccct tactgttatg gtagttgctg ccctgttttt
     4441 gacgcaaaaa gaacagagca attcaacgaa tagcacagag aaagtcaaaa ttggggtcct
     4501 ccaatttgtg acacatgatt cattagatga gatttataag ggaatcaagg caggtcttaa
     4561 agaaggtggt tataccacaa cggataattt agaaattgat tttatgaatg ctgagggtga
     4621 tcagtcacag gttcaaacca tgagtaaaaa attggtggac aatggcaatg aattattgat
     4681 tggtatcgca acacctgctg cacaaggtct tgccaatgca actacagaat tgccaattat
     4741 catgggtgcg gtaacagacc cagttggtgc taacttggtc aaagacttga aacatcctgg
     4801 tgggaatatc acaggggtat ctgaccagac accagttgca gatgctgttt ctctcatcaa
     4861 ggaaatcaca ccagaggcaa aaacaatcgg tgtcctctat tcttcaaacg aagacaattc
     4921 aaaaattcaa gtagcggaat ttaaggcagc agcagaagag gctggctata ctgttcttga
     4981 atatgcagtt gcttctagta atgaaattgc agcgacagta gaggtcgcaa gtagtaaagc
     5041 agatgttctc tttacaccag tagacaacac agttgcgtca gcattttcaa cagtcgtttc
     5101 agtggcaaat aaaacaaaaa ctccgatttt cactagtgta gaagatatgg tagaaggcgg
     5161 aggtatcgca tctgttaccc ttagccaata tgacttgggt gtggcaactg gtaagatggc
     5221 tgcgaaaatt cttgatggtg ccaatccagc ggatacacct gtacaaatct ttaacgaggg
     5281 taccgttgtt gtcaaccaaa aagttgctaa agaattagga attaccttgt cagatgatgt
     5341 gattagtaaa gcaagcaagg ttatcgaata agagatagag aaaaggaaaa atatgattgt
     5401 atcaacagtt tcacaggctc ttttatgggc tgtactaggt ttgggaatat tcgttacctt
     5461 tcggattctg aattttcctg atatgacgac agaaggctct ttcccgcttg gaggagcggt
     5521 tgctgttacc ttattgacgc aaggagttca tcctatcttg gctactctag cagcagttct
     5581 tgttggctgt ttggcgggct ttgtcacagg cttgctttat accaagggga aaattcccac
     5641 tctcctagct ggtatcttgg tcatgtcttc ctgtcactct gtcattctat ttatcatggg
     5701 tagggcaaat ctaggcttac tgaataccaa acgtttacaa gatttccttc ctttttctga
     5761 gcaaattaat ggtctattgc taggtctagg tagcctagcg gtggtgattg gtgccttgat
     5821 gttcttcctc tatactcgct tgggtcaagc ctttattgca acaggggata atccagatat
     5881 ggcacgcagt tttggtatca ataccagtcg aatggagttg ctgggtcttg ttctttcaaa
     5941 tggggtcatc gcacttgcag gtgccttgat tgcacaacaa gaaggctatg cggatgtgtc
     6001 gcgtggtatt ggtgtcattg tggtcggtat ggctagtctg attatcggtg aggtaattta
     6061 tggtaacctt actatgttag aacgattctt ggccattgtt gtcggagcga ttttctatca
     6121 gttcttaatt ttggtggtca tttctctcgg tatcaatacc agctacctcc gtatcttctc
     6181 ggccatgatt ctggcaactt gcctcatggt tcctgagttg aaaaataaac ttctgaaagg
     6241 agctagtctg tcacgatgaa agcaattgtt gaattaaaaa atgccaccaa ggtggtgaca
     6301 aacggttttg atgaagaacg tgtgattttg gacaatgtca atctgaccat ctaccagggt
     6361 gattttatta ccattttggg tggaaatggg gctgggaagt caaccctctt taatgtcatt
     6421 gctggaactc tacccttgac tagtggttca gtccatattc ttggtgagga tgtgaccaat
     6481 tggcctgcgg aaaaacgggc taagtatctg gcgcgtgtct tccaagatcc taaaatgggt
     6541 acagcgccac ggatgacggt ggcagaaaat ctactgatag ctaagtaccg tggcgaggga
     6601 cggggcttag tgccacgcag attggcccaa cagacggaag aatttgccca gcttttgccg
     6661 agagtgggaa atggtctaga aaaacatctg gacacgccag caggactttt atcaggtggt
     6721 caacgccagg cattgagttt gttgatggcg agtttgaaac agcctgaact tttactcttg
     6781 gatgagcata ctgcagccct cgaccctaaa accagccaat ccttgatgca attaacggat
     6841 gagttgattg agaccaaggg aatgacggcc ctcatggtca ctcaccagat ggaagatgct
     6901 ctgcgtcacg gtaatcgctt gattgtcatg aaaaatggtc agattattca ggaccaaacg
     6961 gctgaggaaa aatccaagat gaaattggaa gattattata agttgtttga ttaagaacct
     7021 gtgtggatag ttcgcaactt ccaaccaagt ttggttttgg ctaaaactga atcttatatc
     7081 aaacagatca cttgtgaata caggtctaaa gtctggagta atccaggctt ttattatcct
     7141 ttgaattttt agttaaaaag cagtataata tactaaatat atcaagaggt gctgtcatgg
     7201 ataaattggt ttttaaaaca ttagctgact tgggaatgga ttacaccatt gtagagcatc
     7261 caccagctcg gacaactgag gaagcagacc gttacattga agggttagaa ggagtacgga
     7321 ccaagtccat gtttctgacc aataagaaaa agacagccta ctatttgcta attatggatg
     7381 acaataagca gctggatatg gaccagtttc gtgatttggt gggtgccaac cgcattcgaa
     7441 tggcttcgag tgagagcttg atggaaaaaa tacacttgcc tgcgggtgcg gtatctgttt
     7501 ttggcttgtt acataatgtt gataaggata ttcaagtctt ttttgataaa gaaatccttt
     7561 ctgaacccat tctaaccttc caccccaatg ttaatacgaa aacgattttt gtaaagacag
     7621 aagatgtttt acgttttgtc gaagagattg gcttttcagc aatgattgtt gacttggggt
     7681 aacaaagatg agaaaatgtt tagctatttt tagtctattg tgttgtctct ttttggtagg
     7741 atgtcggaca agagcagctt atcaggcaga gattgaaccg atggaacaat cagaattgta
     7801 tacggaaaaa gagattgagg cggctattct tgtagttcaa gattactttg atcaccattt
     7861 taacagttgt aaattgctga ctatcggtta tagtggtgat aatgaaaagg aatttgatga
     7921 gtgggcggag cactatggtg cagaggaagc tattatccta acttcgtctt ttaaggtagc
     7981 agctgagggg gcagagccca ccttagagcc taatagtacc catacggatt ggaaatggat
     8041 tttagtgcgg aatgttggtg gtaagtggga acataaggga catggttact aatgtatatg
     8101 tagaacttcg ttgattttca gcggagtttt ttgtaaattt tcttgaaaaa atgtataata
     8161 gaagcgatag ctaaaatata gtcttttagt ttacttttag tactcgctcc aactatctgg
     8221 gagatagttg gagactaggg ataaagtgaa cgatgttcac atcaaaagcc gcaggcataa
     8281 ctggagttag gcaaggcgag ttcaaacaat ccagtggagt gtttgaagtt ggaaataggg
     8341 aaacggagtt tcctcttacg tcgaagtaat aaaagaaaaa ctaaatgacg ataaatagca
     8401 gactgtaatt cgacttgggc atcccaagga ccgttggtaa gaaaaataaa atggacacct
     8461 gtgggatgtc caaaaaggag aaaaaatgag tagcataaaa atcatggctc ttgggggtgt
     8521 gcgggaaaat ggaaaaaacc tgtacattgc cgaagtgaat gaacatattt ttgttttgga
     8581 tgcaggggca aagtatcctg agaatgaaca gttaggtgtg gatgtagtcg tcccaaattt
     8641 cgattatttg gaagaaaata agcaccgtgt agcaggggtc tttttatctc acgggcatgc
     8701 agatgctatc ggggcgcttc cttatctctt ggagaaagtg aaagtgccag tatttggttc
     8761 gcacttgacg attgaattgg ctaagctact tgtcaagggg aataatgcta ctaagaaatt
     8821 taatgatttc catgttatca atgctgaaac tgaaattgat ttcggggatt cagtggtatc
     8881 tttctttcag acgacccact ctattccaga gagtttagga attgtcgtta agacggatga
     8941 aggaaatatt gtctacacag gtgactttaa gtttgaccag gcggcagata agttttatcg
     9001 tacggatttt gggcgattgg ctgaaatcgg taacgaaggt gtgttggccc tcttatcaga
     9061 ctcagctaat gcagatagca atgttcaagt agcgagcatg catgaggctg gggaggaaat
     9121 tctcaatacg attgctgact gtgacgggcg agttattgtg gcagcagttg ccagcaatat
     9181 tgtacgtatt caacagattt ttgacgcggc agaagcaact ggtcgtcgtg tcgtgttgac
     9241 aggacatgat gtggaaaaca ttgtccgaac agcgattcaa ttgaaaaaac ttcgtttggt
     9301 cagcgaacgc ttgttggtaa aaccaaagga tatgaacaag tatgaagacc atgaattgat
     9361 tattctagaa actggtcgta tgggcgagcc gttaaatgga ttgcgtaaaa tgtctatcgg
     9421 tagacatcgc tacgttgaaa tcaaagaagg tgatctagtt tatattgtta ccactccaag
     9481 tatttcaaaa gaagcggttg ttgctcgtgt agaaaacttg atttacaagg ctggtggaac
     9541 ggtcaaatcc attacaaaaa aactgcgtgt atctggtcac ggcaatgcgc gtgatttgca
     9601 gctcatgctc aacatcatga agcctaaata tcttttccca gttcaagggg agtatcgtca
     9661 attggatgct cacgctaagg ctgcgcttga aatcggtatg tatccagaaa acattatcat
     9721 cgttaagcgt ggggatgtca tggcttttga agagggggat tttgtccata gcggagcggt
     9781 tcctgctggt gatgtcatga ttgacggaaa tgccatgggc gatgttggaa atatcgtcct
     9841 tcgtgaccgt aagatcctct cagaagacgg tatctttatc gtggctatca ctgtcaaccg
     9901 ccgtgagaag aaaatcattt ccaaggccaa ggtcaatacc cgtggttttg tctacgtgaa
     9961 aaagagcaag gacatcttgc gtgaggcatc agaattggtg aatacaacgg tggaaaatta
    10021 ctttacaaag gatagctttg actggacaga gcttaagagt gctgttcgcg atgatttagc
    10081 aaaattcctc tttgaccaaa ccaaacgtcg cccagctatt ttaccggtaa ttatggaagt
    10141 caagtaagct gatttatata tagtcatttg aattaacttt gatacatcgt cactttcggc
    10201 ttgccgtact ctagtacagc ctgcacctca gttccttgtc tgaaagctaa ttcattcgac
    10261 tatacataag aagagccgag ggaaactcag gctctttacc ataaggagaa gatttatggc
    10321 aataatgaaa attgaatacc actcagaagc tctagatatg tctagacagg ttacggtttt
    10381 atatccagat cgcaatcgtg tggaaaatcc tgatgacaac gatattcctg tcctatatct
    10441 tttgcacggt atgggaggaa atcaggattc ctggctgaat cgttctacag tggaacggtt
    10501 ggttcgttat accaatctta tcgtggttat ggtcaataca gataaaggtt ggtataccaa
    10561 taccacttac ggtatgaatt acttcgatgc cattgcagta gagttgcctc aaattctcaa
    10621 acgatttttc ccaaatatgt ctgacaagcg ggagaagaat tttattgctg gcttgtctat
    10681 ggggggctat gggactttca agattgccat gatgaccaat cgtttttcac acgcagcttc
    10741 cttgtctggc gccttgtatt ttgattttga taatccagcg acagcagaat tgggaagtct
    10801 ttcgtattgg cgaggagtat ttggtgatat ttctgataaa cagaatccaa ataatttgtt
    10861 agaaattgct aaacaatccg ataaaaagac caaattttat gcctggtgtg gtgaggaaga
    10921 ttttctcttt gaagggcatc aaaaggcagt tggggagttg aaagagctgg gatttgatat
    10981 agaggcgagt ttcggacctg gtaaacatga gtggtactac tggaatcagc agattgagaa
    11041 ggtattggct tggttgccaa ttgatttcaa attggaagaa agactgtcct agtttttaag
    11101 aaaagtttca gaaattatgg ctatactaaa aactatttct agaaagaggt atagtctatg
    11161 aaacttattg gaaatattct gcggtggatt tggcggacat tttggggtct gatttggtta
    11221 tcaatggtgt tggcttgtgg tctaggtcta ttattctatt ttcaacagga agcagcgcct
    11281 cagatgttac aaactctagc tcaagaagtg caattgatgg tcaaaggaca gtctgaagtg
    11341 acgattgaag aaggtgttaa tactattaag cacctgacga ctgatacggt taatacagct
    11401 gatcatggtc gatgggaaag caatactgcg actgtttata ttgaaaccct gaatccaaca
    11461 tttgtagctg cctatgaaac agccattgca aattggaatg cgacaggggc atttactttt
    11521 gtgatgacaa gtgatccaaa tcaggctgat attattgcta ctgagaagaa tgatggaaat
    11581 acccaggcag caggtgaggc caattcaacg actaatttat tgacgaatta ttatagctcg
    11641 gtaacggtgc gtctgaatag tttttattta ttaaacgacc aatatggtta tgatgaggct
    11701 gggcaaaaag cccaggacca ctactcagag ttcgtgtcaa catctcagcg cagtggttga
    11761 ttggcagatt tgttcgtgtt tcatactcca aatctgacca ttacgactga tgcgaacaga
    11821 gttcgcttca tttccaacct ccaacagtca ctactctgac tgttggagct atgcggggtg
    11881 ggagtgaaac agtctgggaa tagactgttt cagctcaaca actagaaata aagacttgtt
    11941 gacgaactct ttctagactg gtcgagttct ttcccactcc cacagctgag catgaattgg
    12001 gccatgctat tggcctaaat catgaagata gtcagacctc tgttatggaa tcggcaggtt
    12061 ctaatcatgg tatccagcaa gcagatattg atgcggtcct tgccttgtat tcagaataga
    12121 agggaaaata tgtttcgaac aattacaaac acaataaaac gttatcctga gcaagctctg
    12181 ctctttctct ataatgctgg gatttttgca tggatgcagt ctaccagtca ttcgattatg
    12241 gaacaaatcg gtatagatag cagctggttt gataaaatcc ctgaacctat caaggcctgg
    12301 acaggtgcca gtctagagag tatgcaaacc ttactcaatt cttccgcttg gggatggctg
    12361 attgtatcta tgatattgat gttggtcatc cgctttgtta agggcttgat caagtttgtc
    12421 atcatgctga ttattatcgg cggtggtctt tatctactct ggcagaataa ggaattgctt
    12481 agcggattga aggtataaaa atcgcaaaag aaaaaaagaa gctgagcaag ccatcttaga
    12541 tgtctgctca gcttttttga cttgtatagt agtttgaatt aggaaaagga caattttgag
    12601 ttatagtgtt aataacccac tcctaaaata actttagagt tctcaaattg acaaacttag
    12661 atatatcctg tttcaaattc acttaactat aaaacacgaa ttgctgagat ttgcttcgca
    12721 aatcctatct ccaaccttct tcctcgcttt catgcttcga ggttcaggct gaaacagttc
    12781 cccgaactgt ttcactccac tggactgtta aacccaatca accactgcgc tgagatgttg
    12841 acacgaactc tgagtagtgg tcctgggctt tctgcccagc ctctggaaat aatgcttaca
    12901 aataggtctt acttaacaac tacttgaagt ttttagaggt gcccggcacg ccaaacgtat
    12961 gaagaaaaat tcgttttcag ataacgtttt ttcataaaaa aagttacatt ttcatcgtga
    13021 aattttgtta taatgtaggt gaaaacgagg atacatcaag gtaattatgt aaatatcgtg
    13081 aaaatatttt tgaaaaatgc aagtagc
//
LOCUS       DASGAC010000046        12970 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.046, whole genome shotgun sequence.
ACCESSION   DASGAC010000046 DASGAC010000000
VERSION     DASGAC010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12970)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12970)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12970
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.046"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            16..1677
                     /locus_tag="U1335_001020"
     CDS             16..1677
                     /locus_tag="U1335_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231510.1"
                     /translation="MKRKLFVFAWLALVLEMLIYYWYQLPALNILSVDFWIFFLQSVG
                     LVWLILSMFSSKGAFQKVTKISGRQRQVDTYQIKTSQLPAYLKWLGRIWVLVVLGLLG
                     LVLINSRVFRAKDYAAVISVKDADFKADFPETDISKLALLDRASAEKIGDTYLGTIDK
                     VSQFGISDDYRQITIGQQPFRVSPLEYKNFWKWLSNHQDGIGYYVKVNQTTGKAELAK
                     LSKAMHYSDSEFLLNDTLRHLRLQYPTTIFGKPSFEVDDQGNPYYIATIYEPKFGLSS
                     NDPIGAIVLDAVTGESKKYGLEDIPEWVDRVYSANNVISRVDDHYTYQNGFWNTIFSQ
                     TGVKNTTDSYNYISIGSDIYLYTGITSATADSSNLGFILVNMRTREITNYKLASATET
                     AAQESAEGEVQEKGYKATAPSLVKLADTAYYLVSLKDDAGLVKSYALVDAEDYQQVTV
                     NNDIALLISQVTGTDASSLSGLTVTENGEVGEQTEVISGKVEALASQIIGGATIYYIE
                     SEGKIYKVKATEDSTDRLPFIKVGDHFSGQLDKKNYLKNFKVNPE"
     gene            1837..3225
                     /locus_tag="U1335_001021"
     CDS             1837..3225
                     /locus_tag="U1335_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEM5231511.1"
                     /translation="MSLFRKKQAVARSSQMRRHLGLVDLIFLGIGSMVGTGIFTVTGL
                     AAAQYAGPALIISIVIAAISVGLTALFYAEFASRIPTNGGAYGYLYSVFGEFPAWIAG
                     WLTIMEFLTAVSSVASGWGAYLKGLLANFGIAMPTALNGTFNPAAGTYVDLLPVLVLI
                     FVVGVVLLNSKAALRFNSALVVLKFSALALFILVGLFFIKPENWSNFSPFGFGAIYGG
                     QAGIMAGASLMFFAFLGFESISLAIDEVKKPEKNVPKGIVLSLSIVTILYIVVTLVLT
                     GMVHYTKLNVADAVAFALREVGLDWAASYISIVAILTLITVCISMTYALSRMVYSISR
                     DGLLPKSLSRLTQTSKVPKNATILVGIFAAICAGIFPLASIASFLNICTLAYLIMLAL
                     GIIRLRQVEGLPKAGQFKTPLVPLLPILSIIICLSFMFQYSLDTWLAFGVSLVIGILI
                     YFCYGYRHSEVK"
     gene            3500..4381
                     /locus_tag="U1335_001022"
     CDS             3500..4381
                     /locus_tag="U1335_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF975 family protein"
                     /protein_id="HEM5231512.1"
                     /translation="MSNSDIRARATLIRENTEGMLALFMAPVLISFLSGMLNYGLKQI
                     WGRTGIVFWGSTIVKDGVTWSHNYISLDPSIIFDFIAQCLIVTACFQLIRVVRKQRDK
                     VSFSECFSLLDGKNFLPILVTTFLKMLVIYIAGFPAVIGMALLSISFFSTVFIVGAPI
                     GYQPDFSGFFGSSYFQIGIILILIGVICSLFIDYGLCQVQFLLYDHLENNIYSSPFKL
                     FKQSWQLMKGNKWRRFMLDLSFIGWFIGILLTFGLLALYVYPYYWTCQALFYEDLIAK
                     NPLLLSRVDSVWSSELG"
     gene            complement(4493..5374)
                     /locus_tag="U1335_001023"
     CDS             complement(4493..5374)
                     /locus_tag="U1335_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5231513.1"
                     /translation="MKTAFISEKAKSRFNLNFILSPITALVLMAVAETVGYFAFMPLF
                     FIFIDNAFVTLSLELLAFTFISLAIIIWARFVEKSPWLGLGMTKKGAFKDFILGWGIG
                     AAMLITCVLLMWGFGAIRISSVQFSPQLFGEFLVLVLAWSVQGTTEELLTRGWMFSSL
                     SAKHNIPVGILVSSLFFTFLHLGNDGLSLIPLLDLTLFAILACLVMLKTGNLWVISGI
                     HAAWNCFQGNVFAFPVSGTQAGQAFIAVETSGPDWLSGGAFGVEGSIISLLIQAGMIT
                     WLVYELYFTSPSTELEL"
     gene            5488..6099
                     /locus_tag="U1335_001024"
     CDS             5488..6099
                     /locus_tag="U1335_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3885 domain-containing protein"
                     /protein_id="HEM5231514.1"
                     /translation="MKLMDWLRDFQFGEHQLVGPFFYATPLALKFEVGPAEEAETLPK
                     KVYLDRAYARAVELLEQASSAYDYVVLSLLRQEDRDIDSYLWHFTSKFNFNKCPEPEL
                     IEVEDWTGEVLVFERYLFPVADQDLKALLREIIKADHGGFNYLSSSVLFLSSKDKVIY
                     HCYDDRGVDIAVVDDDKRRQLFTDCYDLLFDYDMEEMERRMES"
     gene            6157..9393
                     /locus_tag="U1335_001025"
     CDS             6157..9393
                     /locus_tag="U1335_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000401851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEM5231515.1"
                     /translation="MEIDNRLVLLGDQLKEHLGKGSKVKMAAATFSMFAYQSLKEELE
                     QIEELQFIFTSPTFTTNEVTKEYREYTIPKKQRESSIFGAEYELKLMNELTQKSLARE
                     CADWVRRKAQFKSINVHEEIDNGIRIENDQIIAVDKLKNFDRKELGYENSLFKSSRNL
                     YTEPQSLTYLRNFEDYWNNDEYFRDVTEEVLENLTLAHKEHSPEFLYYVMLYNIFSEF
                     LEDVNQDQLPNEHVQYKETKIWNLLYDFQKDAVKSLISKLERYNGCILADSVGLGKTF
                     TALAVMTYYAYRGKRILVLCPKKLEHNWNMYRHDYVNNPIYDRYLQYDVLYHTDLSRD
                     KGTSNGIDLALNRWDTYDLVVIDESHNFRNGGSSDSEIEEGRENRYSRLMNRIIKSGV
                     PTKVLMLSATPVNNRFNDLKNQIALAYEGDAAQFDAKLDTKSSINDIFRMAQAAYNQW
                     AELPAESRTTAALLDKLDFDFFKVLDSVTIARSRKHIRQFYDRNAIGDFPERLAPKNF
                     YPDLTVNRRDITYERIYSLLDQLQLTIYQPSLFIHPSKRSRYEKAEGQGLTQLGRETG
                     IKKLMMINLLKRLESSVEAFRYTLIDVVKAYVDKTIRSIEEFEVAGGEGKVQLQELAE
                     DDFDVEDSNTDFFVGKKFPIKLADMDYLSWKRDLQADQIVLRELEDLVNLITPQEDQK
                     LQTLFNLIDDKLAQPINPDNKKVIIFSAFATTTDYLYKNISHYLLDKYGLHTAQISGT
                     KGFSTTLPLKNKDLNTLLTYFSPRSKQKDLLYPDDPREIDVLIATDVISEGQNLQDAD
                     TMINYDIHWNPVRIVQRFGRVDRIGSQNKYIQLVNFWPNIALDAYIDLKARVESRMKI
                     SVLTSTADDNVLTNEEIEENNYRKKQLERLQTEVVDLEDMNEGISIMDLGLEDYRMDL
                     LSYLAKHPELEAMPKGLQAVVQAGQGQSAGAIFLLKNIANQTHLSRKNRLHPYYLVYI
                     SDQGETVYSIADTKALLEHLRMITKGKNQPEKDLVATYNRATDDGAKMEHYSDLLQRS
                     LENLVESDEETFNESLFTSDTIDFMDSGVDGSDDFELMAFFAVLKGED"
     gene            9395..10105
                     /locus_tag="U1335_001026"
     CDS             9395..10105
                     /locus_tag="U1335_001026"
                     /inference="COORDINATES: protein motif:HMM:NF025693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4391 domain-containing protein"
                     /protein_id="HEM5231516.1"
                     /translation="MPFLPSTQIPRPKVLYKPYQKGNKDFLDNFGLSTADKQLLRQQI
                     GQITATHQLDSKTLPIPAGKTIQQIIVLRIDLLSQQLDLHLLAELDTYLGFYTLFHLV
                     FPDETSQYLIHFKEKLAQSREGRNFKIVRHFQTDKPLALTYQERDLDQFYENLVKQAG
                     EEELVGGGASIKDQIEQTERLAAMEKKATQLKKKMFAEKAMRKQMELRKAYKALEEEI
                     QQLRTSIHSSAPSSKASF"
     gene            11253..12755
                     /locus_tag="U1335_001027"
     CDS             11253..12755
                     /locus_tag="U1335_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEM5231517.1"
                     /translation="MIYIDPPYNTGKDFVYSDKFQMSEEELADEMDLRDENGLQRVGL
                     TKNEKSSARYHSDWLNMMYPRLVLARNLLKDSGVIFISIDDNEQANLKSICDEIFGEE
                     NFVGGIIWNNKYTVSNDTDLSYQHESILIYSKNRAIGSLNLLPRTEKQNSSYKNRDND
                     PRGPWKATPIHARSGSLTNLYDMTFSNGVKWQAPPGTFPRYSQKTLLELYEDNRLYFN
                     KNGGVDKKTFLSEVRNGITTGTLWNYDDVGHSHGNNDELSKLIGKGMFNDPKGTKLLR
                     KILTIGSSNNSLILDFFAGSATTADAVMQLNAEDGGNRKYILCTLDEQVADKSAAKEA
                     GYETIDQISRERIRRAAKKIQEEHPETLGKQDFGFRAYKLDSSNFKDVSQTPDSFSQD
                     SLFDSVSNIKDGRTDLDLLFQIMLTWGMELSLPITKTQIDGTDIYNVADGALIACFAD
                     EISESTLRQIAKEEPLRAVFKDESFANSAAKINLGQIFKEEAPNTKVKVV"
BASE COUNT         3882 a         2500 c         2830 g         3758 t
ORIGIN      
        1 gtcaaggagg ttattatgaa aagaaaatta tttgtttttg cctggttagc cctagttttg
       61 gaaatgctaa tctactactg gtaccagttg cctgctttaa atattttgag tgtggacttc
      121 tggatatttt tccttcaatc tgtcggattg gtctggctca tactttccat gttcagctcc
      181 aaaggtgctt ttcaaaaggt gaccaagatt tccggtcgcc agagacaagt agatacctat
      241 cagattaaaa cctcgcaact accagcttac ttaaaatggt tgggacgaat ttgggtattg
      301 gttgtcctgg gtttgttggg gctggtgctt atcaactcac gtgtatttcg tgctaaggat
      361 tacgctgctg tcataagcgt caaggatgcg gattttaaag cagattttcc tgaaacagac
      421 atatccaaat tggccctcct agatcgtgcc tcagccgaaa aaatcggtga tacttatcta
      481 ggtaccattg acaaggtctc ccagtttggc atttcggatg attatcgcca gattactatc
      541 ggtcagcaac cattccgtgt atcgcctttg gaatataaga atttttggaa atggctgagc
      601 aaccatcaag atgggattgg ttactacgtg aaggttaatc agacaacagg gaaagcagag
      661 cttgccaagc tgagcaaagc catgcactat tcagattccg aatttttgct gaatgatacc
      721 ttacgtcatc ttcgcttgca atacccgaca accatttttg ggaaaccatc cttcgaagtg
      781 gatgaccaag gaaatccata ttatattgca acgatttacg agccaaaatt tggactttca
      841 tcaaatgatc cgattggtgc tattgtattg gatgcagtaa caggggaaag taagaagtat
      901 ggtctggaag atattccaga gtgggtagac cgtgtttatt cggcaaacaa tgttatcagc
      961 cgcgtagatg accactatac ttatcaaaat ggtttctgga ataccatttt cagtcaaact
     1021 ggtgtgaaaa atacaacaga cagctataat tatatttcta tcggctcaga tatttatctc
     1081 tacacaggta tcacctcagc aactgctgat tcatccaacc ttggatttat tcttgtcaat
     1141 atgagaactc gtgaaattac caactacaaa ttggcttcgg cgactgaaac agcagcgcaa
     1201 gagtccgcag aaggtgaagt gcaggaaaaa ggctataaag ccactgctcc aagcctagtt
     1261 aagttggcag atacagccta ctatttagta tccttgaaag atgatgccgg cttggttaaa
     1321 tcatacgctc ttgttgatgc cgaagattat caacaggtta ctgttaacaa cgatattgcg
     1381 ctcttaattt ctcaagtcac aggaacggat gcttctagcc tttcaggatt gacggtgact
     1441 gaaaatggag aagttggtga acagactgag gttatcagtg gaaaagtaga agctttagcg
     1501 agtcaaataa ttggcggtgc gacaatctac tatattgagt ctgagggcaa gatttataaa
     1561 gtcaaagcaa cggaagatag tacagatcga ttaccattta tcaaagtagg agatcacttt
     1621 agcggtcagt tagataagaa aaattatctt aaaaacttta aggttaatcc agaataataa
     1681 aaagaaagag tgaggtagaa aagccttgct cttttgcttg tcgtcaccca tgcgagatat
     1741 ttcaacttat ggtataatgg ggcgttgtgg ttctttgaca ggaatccgta gattgttctg
     1801 tcgagtatcc atattcttat tctgaaggag tattttgtga gtttatttag aaaaaaacaa
     1861 gcagtggctc gcagcagtca gatgcggcgg catttggggc ttgttgatct gatattttta
     1921 ggtatcggtt cgatggttgg aacaggtatc tttacggtaa ctggtttggc agcagcccag
     1981 tatgcagggc cagctctgat catctcaatt gttattgcag caatttcagt cggactaaca
     2041 gccttgtttt acgcagaatt tgcctcgcgt ataccgacta acggtggtgc ctatggttat
     2101 ctctactcgg tttttggtga atttcctgcc tggattgctg gctggctgac aatcatggaa
     2161 ttcttgactg ctgtatcgag tgttgcatct ggttggggag cttatttgaa aggactcctg
     2221 gctaattttg gtatcgctat gccgacagct ctgaatggaa cttttaaccc cgctgcaggt
     2281 acctatgtag acctcttacc agttctcgtc ttgatttttg tggtaggagt ggtcttgctt
     2341 aattctaagg cagctcttcg tttcaattca gccttggtag ttttgaaatt ttcagcgttg
     2401 gctttattta ttttagtagg gttattcttt atcaaaccag aaaactggtc gaacttctct
     2461 ccttttggtt ttggtgccat ttatggtgga caggcaggaa ttatggcggg agcgtctctc
     2521 atgttctttg ccttcctggg atttgagtct atttcattag caattgatga ggtgaaaaaa
     2581 cctgagaaga atgtaccaaa gggaatcgtg ttgtctctat ctattgtaac aattctttat
     2641 attgtagtga cattagtatt gactggtatg gttcactata ctaagttgaa tgtggcagat
     2701 gcggtagcct ttgcacttcg agaagttgga ttggattggg cagcgagtta tatttctatt
     2761 gttgcaatcc taacattgat tacagtatgt atttcgatga cctacgcctt gtcgagaatg
     2821 gtctattcca tcagtcgtga tggtttgcta ccgaaatcat tgagccgatt gacacaaaca
     2881 agcaaggttc ctaaaaatgc gaccattctt gtggggattt ttgcagccat ttgtgcaggt
     2941 attttcccac tagcaagtat tgcttccttc ctcaatatct gtaccttagc ttatttgatc
     3001 atgctggcgt tgggtattat tcgtctgcgt caggttgagg gcttgccaaa agcaggacaa
     3061 tttaaaacac ctcttgttcc cttgttacct atcctctcga ttatcatttg tctttcattt
     3121 atgttccagt atagtttaga tacttggtta gcattcggag tatccttggt tattggaatt
     3181 ttgatttact tctgttatgg ctatcgtcat tcggaagtga aataataaat agattaaggc
     3241 tgggcaaaaa gcctagcacc acttttcaga gttcgtgtca acatctcagc gcagtggttg
     3301 attggcagat ttgttcgtgt tttacactca aaatctaacc taatcaactg tgcgggggtg
     3361 ggaagacgaa ctctttttaa ctagtcgagt tctttcccac tccctttttt gtacaatttt
     3421 tttatagaaa taatggaaaa cttaaaaata aaatagtata atatatataa tgatacggat
     3481 atatgaaagg agaaacgcaa tgtctaatag cgatattcgt gcaagggcta ctcttattcg
     3541 ggagaataca gagggaatgt tagccttatt tatggctccc gtcttgattt catttctgtc
     3601 aggcatgctt aactatggct tgaaacaaat ctggggacga acgggtattg tcttttgggg
     3661 aagtaccatt gtaaaagatg gggtaacatg gagtcacaat tatatatcgc ttgacccgtc
     3721 aatcatcttt gattttattg cacaatgttt gattgtgacg gcgtgttttc aactcataag
     3781 agtcgtaaga aagcagcgag acaaggtcag cttttcagag tgttttagtc tactggatgg
     3841 gaagaatttt ttacctattc tggtcacgac ctttttgaaa atgctcgtta tttatatagc
     3901 tggtttccca gctgtcattg ggatggcttt acttagtatt tcatttttca gtacagtttt
     3961 cattgttggt gctcccatag gctatcagcc tgatttttct ggtttttttg gctcttccta
     4021 ttttcaaata ggtataatat tgatactgat tggcgtgatt tgtagcctat tcatagatta
     4081 tggtctctgt caggttcaat ttcttcttta tgatcatttg gaaaataata tttattcttc
     4141 tccgtttaaa ttattcaaac agagttggca attgatgaaa ggtaataagt ggcgtcgatt
     4201 catgcttgac ttgtcattta ttggttggtt catcggtatt ttactgactt ttggtttgtt
     4261 ggccttgtat gtttatcctt attattggac ctgccaagcc ctgttttatg aggatttaat
     4321 tgccaaaaat cctttgttac tttcgagggt agattccgtt tggtcttcgg aactaggata
     4381 agcatagatt ttatacagct acattgaaat aaaaatacag acagtttctg ctggatttag
     4441 caatcagcaa gattctgtct gtatttttta tcatcactgc gatacattat tactaaagtt
     4501 caagttcggt tgatggtgat gtgaaataga gttcatatac caaccaagtg atcataccag
     4561 cttggataag gaggctaatg atcgagccct ctacaccgaa agccccaccg gataaccagt
     4621 ctggaccaga ggtttctact gcgataaagg cctggccagc ctgtgttccg ctcactggaa
     4681 aggcaaagac atttccttgg aaacaattcc aggcagcgtg tataccactg atgacccaga
     4741 gattgccagt ttttaacata accaggcagg ctagaatggc aaagagtgtt aggtcgagaa
     4801 ggggaatgag ggaaagtccg tcgttaccaa gatggagaaa ggtaaaaaag agggaagaaa
     4861 caaggatacc gacaggaata ttatgtttgg cagaaaggga agaaaacatc caaccacgag
     4921 ttagcaattc ttcggtcgta ccttgtacag accaggctaa aactaataca agaaattcac
     4981 cgaataattg aggggaaaac tgaacagatg aaatcctaat tgccccaaag ccccacatga
     5041 gcaggacaca ggttatcagc atggctgcac caattcccca tccaagtatg aagtctttga
     5101 aggctccttt ttttgtcatc ccaagtccaa gccaaggact tttttctaca aatcttgccc
     5161 agattatgat ggcaagactg atgaaggtaa aggccaataa ttcaagactg agtgtcacaa
     5221 aggcattatc tatgaaaatg aaaaataagg gcataaaggc aaagtagccg actgtttcag
     5281 ctactgccat caagaccagt gctgtgatag gcgataggat aaaattgaga ttaaagcgtg
     5341 atttggcttt ctctgaaatg aatgctgttt tcatattttt ctcctagttt gtgtttagta
     5401 ccagtctatc atattttcct atggaaaact agacatcatt ttgataagtg tgatataatg
     5461 atacaaaagt ataaaaggag aatatctatg aaactaatgg attggctaag agattttcaa
     5521 tttggcgaac accaattggt aggtccattt ttctatgcaa ccccgctcgc tttgaaattt
     5581 gaagttggtc ctgcagagga ggctgaaacc cttcctaaga aagtttatct ggaccgagct
     5641 tatgcgcgtg cggttgaact tttggagcag gctagttcag catacgacta tgtggttctt
     5701 tcgctgcttc gccaggaaga tagggacatc gactcttacc tttggcattt tacatcgaaa
     5761 tttaacttta acaagtgtcc tgagcctgag ctgatagaag tggaggactg gacgggagaa
     5821 gtgctggtct ttgaacgcta tcttttccca gtcgctgacc aagatttgaa agctctcttg
     5881 cgggagatta tcaaggctga tcatggtggc tttaactacc tatccagctc cgtcctcttt
     5941 ttgtcaagca aggacaaggt catttatcat tgctatgatg atagaggagt ggatattgct
     6001 gtggtggatg atgacaagcg tcgtcagctc tttacagatt gctatgacct tctttttgac
     6061 tatgatatgg aggagatgga gaggaggatg gagagctaga aatccttgtc taaagatggt
     6121 atactacatc tggaatgaac atttgaagga gattttatgg aaattgataa ccgactggtt
     6181 ctcttagggg atcagttaaa agaacattta ggaaaaggca gtaaggtaaa aatggctgca
     6241 gcaacttttt ccatgtttgc gtatcagtct ttaaaagaag agcttgagca aattgaagag
     6301 ctgcaattta tttttaccag cccaaccttc acgaccaatg aagttacgaa agaatatcgc
     6361 gaatacacca taccaaagaa acaacgtgag tcatcaatat ttggggcaga gtacgagctc
     6421 aaattgatga atgaactgac ccaaaaatct cttgctagag aatgtgccga ctgggtacgt
     6481 cgaaaggctc agtttaagtc tatcaatgtc catgaagaaa ttgacaacgg cattcggatt
     6541 gaaaatgatc aaatcatcgc agttgataag ctgaaaaatt ttgaccgtaa ggaactgggt
     6601 tatgaaaatt cactttttaa gtccagtcgc aatctctaca cagagccaca aagcctgacc
     6661 tatctgcgaa actttgaaga ctactggaat aatgatgaat atttccgtga tgtgaccgag
     6721 gaagttttag aaaatctgac cttggcccat aaggaacatt cgccagaatt cctctactat
     6781 gtcatgcttt ataatatctt tagtgaattt ttagaagatg ttaatcagga ccaactgcca
     6841 aatgaacatg ttcagtataa ggaaaccaag atttggaatc tcttatatga ttttcaaaag
     6901 gatgcggtca agtcgctgat ttcaaaattg gaacgctaca acggctgtat cttggcggat
     6961 tcggtcggtt taggaaaaac ctttacagct cttgctgtca tgacctacta tgcctatcga
     7021 ggcaaacgga tcttggttct ttgtcccaaa aagttggagc acaactggaa tatgtaccgt
     7081 cacgactatg tcaacaatcc catttacgac cgctatctcc agtatgacgt actttaccat
     7141 acagacctca gccgtgacaa gggaacatca aatgggattg atttggcact taatcgttgg
     7201 gatacctatg atttggtggt cattgatgaa tcgcataact ttagaaacgg tggatcatct
     7261 gattccgaga ttgaagaagg tcgtgaaaat cgctattccc gcttgatgaa tcggatcatc
     7321 aaaagcggtg taccgacaaa ggttcttatg ttgtctgcta cacctgtcaa taatcgcttt
     7381 aatgatttga aaaatcaaat tgccctagcc tatgaaggtg atgcggcaca atttgatgcc
     7441 aaattagaca ccaaatcctc catcaatgat atcttccgta tggcacaggc tgcttataat
     7501 caatgggcag agttaccagc agaatctcgt acaacagctg ctctacttga caaactagac
     7561 tttgatttct ttaaagtcct tgatagtgtg acaattgcac gaagccgtaa gcatatccga
     7621 caattttatg atagaaatgc gattggtgat tttccagaac gactggcccc taaaaacttc
     7681 tatccagatt tgacggtcaa tcgaagagac attacttacg aacggattta ttctctattg
     7741 gatcagctac aactgaccat ttatcagcca agtcttttca ttcatccctc aaaacgttcc
     7801 cgctatgaaa aagcggaagg gcaaggtttg acccagcttg ggcgggaaac ggggattaag
     7861 aaactgatga tgatcaacct cttgaaacgt ttggaaagtt ctgttgaagc ctttcgatat
     7921 accttgattg acgtggttaa ggcttatgta gacaaaacaa ttcggagcat agaagagttt
     7981 gaagttgcag gtggtgaagg gaaagttcag ttgcaagagt tggctgaaga tgattttgat
     8041 gtcgaagata gcaacacgga tttctttgtt ggaaagaaat tccctatcaa gctggctgac
     8101 atggactacc tatcttggaa gagggattta caggctgacc aaatagtgtt gagagaatta
     8161 gaagatctgg tcaatttaat cacaccacag gaagatcaga aattacagac cttgtttaac
     8221 ttgattgatg acaaattggc acagccaatc aatccagata acaagaaagt gattatcttc
     8281 tcagcctttg cgacgactac agactatctt tataaaaata ttagccacta tctcttggat
     8341 aagtatggac ttcatacagc ccagatttca gggacaaaag gtttttcgac cactctgcca
     8401 ctcaaaaata aggacttgaa cacccttctg acctattttt caccgagatc caagcagaag
     8461 gacttgcttt atcctgatga tcctcgtgaa attgatgtct tgattgcgac agatgttatc
     8521 tcagaaggtc aaaacctgca agacgcagat accatgatta actatgacat tcactggaac
     8581 cctgttcgaa ttgtccagcg ttttggtcgg gtagatcgta tcggtagtca gaacaaatac
     8641 atccagctgg tcaatttttg gcccaacatt gctttggacg cttatatcga tctcaaggcg
     8701 cgtgtggaat ccagaatgaa aatctctgta ctgacttcaa cggctgatga caatgtcttg
     8761 accaacgagg agattgagga gaataattat aggaaaaaac agcttgaacg cctccagaca
     8821 gaggtcgttg atttggaaga tatgaatgag gggatttcca ttatggatct aggtttggaa
     8881 gactaccgta tggacctgct cagctattta gccaaacacc cagagttaga ggcaatgcct
     8941 aaaggtcttc aagcagtggt gcaggcaggg caagggcaat cagctggagc catcttcctc
     9001 ttgaagaata ttgccaacca gacccatctc agtaggaaga atcgtcttca tccctactat
     9061 ctggtctata tcagtgacca gggagaaacg gtctactcca ttgcggatac caaggcattg
     9121 ctagaacatt tacgcatgat taccaagggc aaaaatcagc ctgagaaaga tttggtggca
     9181 acctacaatc gtgccactga tgatggtgcc aaaatggagc attactccga cctcttgcaa
     9241 agaagtcttg aaaatctcgt ggagagcgat gaggagacct tcaatgagtc cctcttcaca
     9301 tcagatacca ttgactttat ggatagcggg gtggacggaa gtgatgattt tgaactaatg
     9361 gccttctttg ccgttttgaa aggagaagac taagatgcca tttttaccat ctactcagat
     9421 tccaagaccc aaagtcctct acaagcctta tcaaaaaggc aacaaggact ttctagataa
     9481 ttttggcttg tctacagctg ataagcagct actacggcaa caaatcggcc agattaccgc
     9541 tacccatcag ctagattcca agaccctccc catcccagcg ggcaagacca ttcagcaaat
     9601 catcgtcctt cggattgacc tcttgagtca gcaactagac ctgcacttac tggcagagct
     9661 ggacacttat ctgggatttt acaccctctt tcatctggta tttccagatg agactagcca
     9721 gtatttgatt cattttaagg aaaagctggc gcaatcgaga gagggacgga attttaagat
     9781 tgttcgtcac tttcaaacag acaaacctct ggcattgacc taccaagaaa gggacttgga
     9841 ccagttttat gaaaacttgg tcaaacaagc gggggaagaa gaactggtcg ggggcggagc
     9901 ttctatcaaa gaccagattg agcagacgga acgattagca gcaatggaaa agaaagcaac
     9961 tcagctcaag aaaaagatgt ttgccgaaaa agccatgcgc aaacaaatgg aacttcgaaa
    10021 ggcctacaaa gccctagaag aagaaatcca acagttgaga accagcattc acagttcagc
    10081 accttcatct aaggctagtt tttaagatat tcatcgttcg ttttattcaa aatccaggca
    10141 gtatttcttc aaaaaactgc ctggattagc taaaaactat tacttatatg aaagcacttc
    10201 acaagtgaat acaggttcaa aaaaatccac agtaaattct gcggaaaaca tggtataata
    10261 gaacagtaga aaagttccaa aagcggggcg gaaatctatt ttgggaggtg gcaacttcat
    10321 ttttgatgga aagtaaaact ttctcatcaa aaaacgccaa aatctagtca ttttggctaa
    10381 aagttgcact aattcgattt ttgaaaagta ttgtttcaaa aatctcatgt cgatgccaaa
    10441 gacaatcagc atctcaattg attttactct aactaatgtc tgtcgcagag gccctcgggc
    10501 tgatgtttca gtttggcccg ttactaatcg tgctactgac atttattttt aacaatcgta
    10561 aaaaataaaa gacagtcaac cgctatgaaa ctttgacaga gtgaactagc aggttgactg
    10621 taatcttcat tcgtcccgtc tttaaaatgc tcaaacagtc tgggagactg tttgaggtcg
    10681 tttcccaaaa aacggaagga aacgaatacg gcggattgag ttggtgcttc acccttatta
    10741 tatcacaaac taaaatcgtt tgacaatttt ttatctacat catcaaaaaa ggcttgacag
    10801 cctaagaaaa ggagattacc atgagcacag cacagcacag cacagcacag cacagcacag
    10861 cacagcaaaa gcttggagaa tacactcaag ttgaaaagct agacctaagt tcaaaagata
    10921 ttttatcaga caacattgca aaaattggtc agctttttcc tgaggttctg acagaaagta
    10981 gtgatgaaaa tggcaggtta cgtccggcta ttgactttga caagctacgc caattccttt
    11041 caagagagat tgttgagggg cgggagtcct atgagtttac ctgggtcggc aaacgcggag
    11101 cgattgcgga ggcaggtaaa ccgacgaccc agacccttcg cccagatctt gaggaaagtg
    11161 ttgactttga taagtctgaa aatgtcttta taacagggga caaccttgaa gtcctcaagg
    11221 tcttgcagga gtcttatctg ggcaagattg atatgattta cattgaccca ccttacaata
    11281 caggaaagga ctttgtctac tcagataaat tccagatgag cgaggaagaa ctggcagatg
    11341 aaatggacct acgagatgag aatggtctgc aacgggtggg cttgaccaag aatgaaaaat
    11401 cctccgcccg ctatcactcc gactggctca atatgatgta ccctcgccta gtccttgccc
    11461 gcaacctcct caaagacagt ggcgttatct ttatctccat tgacgacaac gaacaagcca
    11521 acctcaaatc tatctgtgat gagatatttg gggaggagaa ttttgttggg ggaataattt
    11581 ggaacaataa atacacagta tctaatgata cagatttatc atatcagcat gagtcaattt
    11641 tgatttactc aaagaataga gctattggtt cattgaacct attacctaga actgaaaaac
    11701 aaaattccag ttataaaaat cgggataatg atcctagagg tccttggaaa gcaacaccga
    11761 tacatgcaag aagtggtagt ttgacaaatc tatatgacat gacattttca aatggagtaa
    11821 aatggcaagc acctccagga acatttccta gatattcaca gaaaactttg cttgaactgt
    11881 atgaagataa tcgcttgtat tttaataaga atgggggagt cgataaaaag acattcttat
    11941 cagaggtaag aaatggtata acaacaggga ctttgtggaa ttacgatgat gtaggacatt
    12001 cacatggaaa caatgatgag ttatctaagt taataggtaa agggatgttt aatgacccta
    12061 aaggtacaaa gctacttcga aaaatattaa caataggttc tagtaataat tctctcatcc
    12121 tcgacttctt cgctggttcc gccaccacgg ctgatgcggt tatgcagttg aatgctgaag
    12181 acggcggcaa tcgcaagtac attctctgta cgctggacga acaagttgca gacaagtcag
    12241 ctgccaagga ggctggctat gaaaccattg accagatttc tcgtgagcgg atccgtcggg
    12301 ctgccaaaaa gattcaggaa gaacatccag aaacccttgg caagcaagac tttggtttta
    12361 gagcttataa gctagacagt tcaaacttca aggatgtcag ccaaacacct gatagtttta
    12421 gccaagatag tctttttgat agtgtttcaa acatcaaaga cggtcggaca gaccttgacc
    12481 tactcttcca gattatgctg acatggggca tggaattatc tcttccaatc acgaaaactc
    12541 aaattgacgg cacagacatt tacaatgtgg cagacggtgc cttgatagcc tgctttgcag
    12601 atgagatttc ggaaagtacc ctccgccaaa tcgccaaaga agaacccctt cgtgcggtct
    12661 tcaaggatga atccttcgcc aactccgcag ccaaaatcaa cctaggccaa atcttcaaag
    12721 aagaagcacc aaataccaaa gtgaaggtgg tgtaggatga tgagtgaaga taaagttaaa
    12781 catctagaaa tgatacaaaa taatatctct aggatgagca ataactcatt cattgttaag
    12841 ggatggtcag taacttcaat tggtgccttg tatagctttt ggttgactaa tttaaacaaa
    12901 agcatttcac atcttatttt aatcttaata tttttggtca cgcttatatt ttggtttcac
    12961 gatgcttatt
//
LOCUS       DASGAC010000047        12929 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.047, whole genome shotgun sequence.
ACCESSION   DASGAC010000047 DASGAC010000000
VERSION     DASGAC010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12929)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12929)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12929
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.047"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(23..1477)
                     /locus_tag="U1335_001028"
     CDS             complement(23..1477)
                     /locus_tag="U1335_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231518.1"
                     /translation="MGEKNSHHLPLDEEKVLDFEVAKDLTIEEAVKKHKEIEAGVTED
                     DGLLDRYIKQHRAEIESQKFETKINPLPLVEVADEEKNQGHESAEEVEANESSLMEVS
                     EEITPIVEELSVTPMETLEETVIASTVAMEGVSSVADDSSLELEEDEAEDLDHSEGAD
                     RDQKKKFYFWSAVGLSMIGVMATALVWMNSVNKSNTATSSSSTSTSQTSSTASSSTDA
                     NVTAFEQLYNSFFTDSSLTKLKNSEFGKLAELKVLLEKLDKNSDSYTKAKEQYDHLEK
                     AIAAIQAINGQFDKEVVVNGEIDTTATVKSGESLSATTTGISAVDSLLASVVNFGRSQ
                     QEVASATVASEAAVTSNQGADETVSTGVPATTEVASTTVSGSTTDFGIAVPAGVVLQR
                     DRSRVPYNQAMIDDVNNEAWNFNPGILENIVTISQQRGYITGNQYILEKVNIINGNGY
                     YNMFKPDGTYLFSINCKTGYFVGNGAGHSDALDY"
     gene            complement(1487..2653)
                     /locus_tag="U1335_001029"
     CDS             complement(1487..2653)
                     /locus_tag="U1335_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HEM5231519.1"
                     /translation="MKKQFELIATAAAGLEAVVGREIRNLGYECQVENGRVRFQGDVK
                     SIIETNIWLRSADRIKIIVGQFPAKTFEELFQGVFNLDWENYLPLGCKFPISKAKCVK
                     SKLHNEPSVQAISKKAVVKKLQKHFSRPEGVPLQEMGAEFKIEVSILKDVATVMIDTT
                     GSSLFKRGYRVEKGGAPIKENMAAAILQLSNWYPDKPLIDPTCGSGTFCIEAAMLAKN
                     IAPGLKRSFAFEEWPWVEDQLVAALRKEAQASIKTDLVLDIAGSDIDARMIEIAKKNA
                     FAAGVEQDIVFKQMRVQDLRTDKINGVIISNPPYGERLLDDEAIVTLYREMGQTFEPL
                     KTWSKFILTSDELFETRFGQQADKKRKLYNGTLKVDLYQFFGQRVKRQVQEVQG"
     gene            complement(2707..3072)
                     /gene="rnpB"
                     /locus_tag="U1335_001030"
     ncRNA           complement(2707..3072)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="U1335_001030"
                     /product="RNase P RNA component class B"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00011"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00011"
     gene            complement(3216..3551)
                     /gene="gpsB"
                     /locus_tag="U1335_001031"
     CDS             complement(3216..3551)
                     /gene="gpsB"
                     /locus_tag="U1335_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division regulator GpsB"
                     /protein_id="HEM5231520.1"
                     /translation="MASIKFTTKDIFEQDFKIGFRGYDQDEVNDFLDDIMKDYDAYEA
                     IIKELKGEIARLKVQVANSPKTTLPTEESNDVLRTERPSSATNFDILRRLNRLEKEVF
                     GKQIVQGQE"
     gene            complement(3619..4158)
                     /locus_tag="U1335_001032"
     CDS             complement(3619..4158)
                     /locus_tag="U1335_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1273 domain-containing protein"
                     /protein_id="HEM5231521.1"
                     /translation="MDTKSLLVTGYRHTDLGIFSEKDPRLHIIKSAIRRNFIRFLEEG
                     VSWFILTGQLGFEYWSLEVLEDLRAEGYQLSIATVFPFENHGEQWNEANQAKLARFKQ
                     VDFVKYAYPRYENPGQFRDYNQFLLDNTAGCYLFYDSENETNLKYLYHMVLKKEGYNR
                     KTLTFEELNEEAENFSNSE"
     gene            4224..4841
                     /gene="recU"
                     /locus_tag="U1335_001033"
     CDS             4224..4841
                     /gene="recU"
                     /locus_tag="U1335_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RecU"
                     /protein_id="HEM5231522.1"
                     /translation="MVNYPHKVSKKINRTSPISAQRVNFANRGMSFEAAINDSNQYYL
                     AHGIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQASTTDYSGVFKRHYIDFEAKET
                     RQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
                     SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN"
     gene            4810..6996
                     /locus_tag="U1335_001034"
     CDS             4810..6996
                     /locus_tag="U1335_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBP1A family penicillin-binding protein"
                     /protein_id="HEM5231523.1"
                     /translation="MVNLLKTTTIKKALLITANILLAGAIIACLAGAALVVYYIQSAP
                     ELTEESLTATVSSKIYDKNGNLIADLGAEKRSNAKTEEIPTDLVNAIVAIEDQRFFNH
                     RGVDVIRIAGSLINNLSGGRLQGGSTLDQQLIKLTYFSTSVEDQNLKRKIQEAWLATQ
                     LERRNTKQEILTYYINKVYMSNGNYGMKTAALAFYGKELKDLTLPQLALLAGMPQAPN
                     QYDPYTSPEDAKERRDLVLAEMLEEKYIDNTQYEQAVLTPVTDGLQPLSTAAAYPAYM
                     DNYLKQVVEEVEAKTGYNLLTTGMDVYTNVDPAAQQQLWNIYNTDMYVSYPDDLLQVA
                     STVVDVSNGKVVAQLGGRKQETNVSFGTNQAVETNRDFGSTMKPITDYAPAFENGIYT
                     STADLILDGPYNYPGTTTPVNNWDKQYYGNISVKTAIQYSRNVTAVKALEATGLENAL
                     KFLNSVGIDYPDIHYSNAISSNTSDTSSKYGASSEKMAAAYAAFANGGTYYAPQYVNK
                     IVFSDGTVTEYAPKGTKVMSAETAYMMTDMMKAVMSSGYGLNASVSGVPMAGKTGTSN
                     YTDSETDTILASIPEANYSYMVVPDENFVGYSSQYAMAVWTGYTNRMTPILDNSMRIA
                     TDVYHNMTLFMHSDYTATDWEMPSGLVRYGSNYYLRGSRSLSNAYNTYTSYSTSSSSS
                     TETSETAEATTTSSETSSGTSTETATSSTETATTGNNPATGQTDGQ"
     gene            7055..7768
                     /gene="rsmG"
                     /locus_tag="U1335_001035"
     CDS             7055..7768
                     /gene="rsmG"
                     /locus_tag="U1335_001035"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004260112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEM5231524.1"
                     /translation="MKPEVFYKTLADQGIQLSDQQKHQFHRYFQLLVEWNEKINLTAI
                     TEESEVYLKHFYDSIAPILQGHIQNEPLRLLDIGAGAGFPSLPMKIIFPQLDVTIIDS
                     LNKRINFLHLLAEELELEGVHFYHGRAENFAQDKNFRAQFDLVTARAVARMQILSELT
                     IPYLKLNGKLIALKASSAEDELTQAKNALNLLFAKVIENHDYTLPNGDPRTLTIVEKK
                     KETPNKFPRKAGMPNKRPL"
     gene            complement(8127..8330)
                     /locus_tag="U1335_001036"
     CDS             complement(8127..8330)
                     /locus_tag="U1335_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEM5231525.1"
                     /translation="MVQGTVKWFNAEKGFGFIAQENGSDVFAHFSEIQSNGFKSLEDG
                     QKVTFEVEQGQRGLQATNITKIG"
     gene            complement(8490..9323)
                     /locus_tag="U1335_001037"
     CDS             complement(8490..9323)
                     /locus_tag="U1335_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HEM5231526.1"
                     /translation="MSQQKLIGYHPGTGLIHSLSAVSKLLFFLIVSILAMITYDTRLI
                     LFIAVFSLALFKMSGIRYKEISLVLILTIIFAAMNALMVHLFAPRYGVELYGADTPLL
                     SGLGVYSLTSQQAFYLVNLLLKYFCTVPLAIIFLMTTHPSQFASSLNQIGVSYKVAYA
                     VSLTMRYIPDIQEEFYTIRMSQEARGLELSRKGKVMDRIKGNLSLVIPLIFSSLERID
                     TISTAMELRRFGKNKKRTWYTQQPLQRIDYAVLLFILALVVVTIYLFFVNQGRFYNPW
                     R"
     gene            complement(9320..10993)
                     /locus_tag="U1335_001038"
     CDS             complement(9320..10993)
                     /locus_tag="U1335_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231527.1"
                     /translation="MKKIIEFKDFTFKYQAQQEPTLKDIQLTIYQGEKVLIIGPSGSG
                     KSTIGQCLNGIIPNIYKGEHSGSLLLDGQEAFNLSIYDKSLLISTVLQDTDGQFIGLS
                     VAEDLAFALENDMESQVVMKQKVGDWAERLSLTDLLAHRPQDLSGGQKQRVSLGGVLI
                     DESPILLFDEPLANLDPKSGQDTIDLIDRLHKQEGTTTIIIEHRLEDVLYRQVDRVVL
                     INDGRILFNGGPNDLLRTSLLQENGIREPLYLSTLRALGYPIAQAERLSSVWEIDIEA
                     LNIASLPTLHFENGEKEALLEVKHLHFSYPNKQVLTDIQLTIHKGERLAIVGKNGAGK
                     STLAKVLCGFIQGEGEILWKGQSIKEDSVKERAERIGYVLQNPNQMISQTMIFDEVAL
                     GLRMRGVTEEEIEHRVHHILKVCGLYSFRNWPISALSYGQKKRVTIASILVLNPEIIL
                     LDEPTAGQDQRHYREMMEFLDQLNAQGHTIVMITHDMQLMLDYSDRAVVVVDGQIIED
                     ASPAEILSDDTVIERANLKETSIFHLAERLGVNPLELTTFYMQEERRGR"
     gene            complement(11105..11410)
                     /locus_tag="U1335_001039"
     CDS             complement(11105..11410)
                     /locus_tag="U1335_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HEM5231528.1"
                     /translation="MAGRFYEAIVFAVATFGDIKSVTLPEGVNLILMQADSFAQRVPF
                     QVVASDNEVLISLNVASREDVDSVEANSGQITGCPTDARGFYGASFTDLDGIILMRL"
     gene            complement(11666..12649)
                     /locus_tag="U1335_001040"
     CDS             complement(11666..12649)
                     /locus_tag="U1335_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HEM5231529.1"
                     /translation="MSKDIRVLLYYKYVPIENAKEYAAEHLAFCKSIGLKGRILIADE
                     GINGTVSGDYETTQKYMDYVHANPLFSDLWFKIDEENEQAFKKMFVRYKKEIVHLGLE
                     DNDFDNDIDPLVTTGAYLSPKEFKEALLDEDTVVLDTRNDYEYDLGHFRGAIRPDIRN
                     FRELPQWVRDNKEKFMDKRVVVYCTGGVRCEKFSGWMVREGYKDVGQLHGGIATYGKD
                     PEVRGELWDGKMYVFDERIAVDVNHVDPVVVGKDWFDGTPCERYVNCGNPFCNRRILT
                     SEENEHKYVRGCSAECRAHERNRYISENGLTRQEWAKRLEAIEETLTPANA"
BASE COUNT         3907 a         2911 c         2285 g         3826 t
ORIGIN      
        1 ttttgcccag cctctttttt gtttaataat ccaaggcatc agaatgacca gcaccattgc
       61 cgacaaagta gcctgtctta caatttatag agaacaagta ggtcccatct ggtttaaaca
      121 tattgtagta gccattaccg ttgataatat taactttttc caagatatat tgattgcctg
      181 ttatataccc acgttgttgc gagatagtca caatattttc aagaatacct ggattgaaat
      241 tccacgcttc attgtttaca tcatcaatca tcgcttgatt ataaggaaca cgactgcggt
      301 cacgttgcaa gacgacacca gctggcacgg caataccaaa gtcggttgtt gagcctgaaa
      361 ccgttgttga agcgacttct gttgtcgctg gtacaccagt agatacagtt tcatcagcac
      421 cttgattgct tgtgactgca gcctcacttg ctaccgtagc cgaagcgact tcctgttgtg
      481 aacgaccaaa attcacgacc gatgccaata gactgtcaac cgcactaatc cctgtcgttg
      541 tcgcagaaag agattctcct gatttaaccg tcgccgttgt atcaatttca ccattaacaa
      601 cgacttcttt atcaaactga ccattaatgg cctgaatggc tgcaatggct ttttcaagat
      661 gatcatactg ttctttagct ttggtataac tgtccgaatt cttatccaat ttttccaaca
      721 gcactttcag ttctgctaat ttaccaaact ctgaattttt tagcttggtc aaactactat
      781 ccgtaaagaa actattatag agctgttcaa aagcggtcac attcgcatct gtcgaacttg
      841 atgctgtcga tgacgtctgg cttgtacttg ttgaacttga agaagtagca gtattcgatt
      901 tgttaaccga attcatccaa accagcgccg tcgccattac accaatcatt gaaagcccta
      961 ctgctgacca gaagtaaaat ttctttttct ggtccctatc agcgccctca ctatggtcca
     1021 agtcttcagc ttcatcttct tccaattcta aactagaatc atctgccact gaagataccc
     1081 cctccattgc tacggtactt gcaatcactg tttcttccaa ggtttccatc ggagttaccg
     1141 aaagttcttc tacaatagga gtaatctcct cactaacttc cataagagaa gactcatttg
     1201 cttctacctc ttccgcgctt tcatgtcctt gatttttttc ctcatcagcc acctcaacta
     1261 aaggaagagg attgattttg gtttcaaatt tttgagattc aatttctgcg cggtgttgct
     1321 tgatataacg atccaagaga ccatcatctt ctgtcacacc cgcttcaatc tccttatgtt
     1381 ttttgactgc ttcttcgatt gttaaatctt tcgccacttc aaaatctaaa actttctcct
     1441 catccaaagg aagatgatga ctattttttt ctcccacgat gtcctcctat ccttgcactt
     1501 cttgcacttg acgtttcact cgttgaccaa aaaattgata aagatccact tttagggtac
     1561 cattatacag tttgcgtttc ttatccgctt gctgtccaaa acgggtttca aacaactcat
     1621 cactagttag aataaactta gaccatgttt tgagtggttc aaaagtctgc cccatttctc
     1681 gatacagagt aacaatggct tcatcatcca acaaacgttc tccgtaaggt ggattagaaa
     1741 taatgacacc attaatttta tctgtacgca agtcttgcac acgcatttgc ttgaaaacaa
     1801 tatcctgctc aactcctgcc gcaaatgcat tcttcttcgc aatttcaatc atacgagcat
     1861 caatatctga tccagcaata tctaatacca aatctgtttt gatagaagct tgcgcttctt
     1921 tgcgtaatgc agccaccaat tgatcctcaa cccacggcca ttcctcaaat gcaaaacttc
     1981 tcttcaaacc cggagctata tttttggcca acattgctgc ctcaatacag aaagttcccg
     2041 atccgcaagt agggtcaata agcggtttat ctggatacca attcgataat tgcaaaatag
     2101 cagctgccat attttctttg attggtgcgc cacctttttc cacccgataa ccacgtttga
     2161 acaaactaga acctgtcgta tcaatcatga ctgtcgccac atctttcaaa atcgacactt
     2221 caattttaaa ctctgccccc atctcttgca agggaacccc ttcgggacga gagaagtgtt
     2281 tctgcagttt ctttacaact gctttcttag aaatagcctg cacacttggt tcattatgca
     2341 atttcgattt gacacatttg gccttggaaa tagggaactt gcagcccaga ggcaagtaat
     2401 tttcccagtc caagttaaaa actccttgga acaactcttc aaaagtcttt gctggaaatt
     2461 gtccaacaat gattttaatt ctatctgctg aacgcagcca gatattggtt tcgataatgg
     2521 attttacatc tccttggaat cgaacacggc cattttccac ttgacattca tagccgagat
     2581 tacgaatttc tcgacccaca accgcttcca gacctgctgc tgccgttgca atcaactcaa
     2641 attgtttttt catttttttc ctctacaata aaagctagca gagctagcta cctattttat
     2701 gcaattttct gtaagccatg ttttgttccg gtggtactag gttctaccac cttcgataac
     2761 catctgtcta ctgttctaaa cagtcaggat ttctgttcat ttccatccat cccatgcccc
     2821 gaccaaagtt tgggttgcta gcttgagggg tttaccgcgt tccatttttt acgtttccat
     2881 aaaaacttcg tcactgtggc actttcagat ctactctggc atatcaaaag acttagccat
     2941 tttaaccgcc gtaacgccca agggcgtccc taggcttatt gattcgccta gcacaaacac
     3001 tactggcatc tcagccagtg ctagcatgga ctttcctcat ggtagaaaac taccacgcga
     3061 ttatccaaaa attgcacctt aattatctta gaagttgtat ctacaaagca agccacttta
     3121 aatcaaggaa tatctctgac acaaatacag aatgtatttg tgcacaagaa aattactgcg
     3181 aataaagtgt cagtttaggt gtacaatttt ctattctatt cttgaccctg aacgatttgt
     3241 tttccaaata cttctttctc cagacggttc agacgtcgga gaatatcaaa gtttgtcgct
     3301 gaagatggac gttctgtacg caatacgtcg ttcgattctt cagtaggaag agttgtttta
     3361 ggagaatttg ctacctgcac tttcaatcta gcaatttcgc cttttaattc cttgataatc
     3421 gcttcataag catcatagtc tttcataata tcatcaagaa aatcgttcac ttcatcttga
     3481 tcatagccac gaaaaccaat tttaaaatct tgctcgaaaa tatcttttgt cgtaaattta
     3541 atacttgcca tctctctctc cctaatctaa aacgtcacta ctattatatt aaaaaaaata
     3601 gggaaaaatc aagtcaaatc actcagaatt tgaaaaattt tcagcctcct cattcaattc
     3661 ttcaaaggta agcgtttttc tattatatcc ttctttcttt aagaccatgt gatataaata
     3721 tttcaaattg gtttcatttt cagaatcgta aaataaataa caacctgccg tattatccag
     3781 taaaaactgg ttatagtctc taaattgccc tgggttttca tagcgtggat aggcatactt
     3841 tacaaaatca acctgcttaa accgtgctaa ctttgcttgg ttagcctcat tccactgttc
     3901 gccatgattt tcaaatggaa atactgttgc aatactcagt tgataccctt cggctcgtaa
     3961 atcttctaag acttctaagg accagtattc aaaacccaat tgacctgtca gtataaacca
     4021 actaactccc tcttctaaaa aacgaataaa attcctacga attgcagatt taataatgtg
     4081 caatcgagga tctttttctg aaaaaattcc caggtctgta tgtctataac ctgttaccaa
     4141 aaggctctta gtatccattt cttgtactct tttcgctaat tatggtataa tatgctgata
     4201 ttattttatc aagaaggagt tctatggtca attatcctca taaggtgtca aaaaaaatca
     4261 atagaaccag tcctatttca gcccagcgag taaactttgc taatcgcgga atgtcttttg
     4321 aggccgctat caacgatagc aatcaatatt accttgcgca cggcattgct gtcattcaca
     4381 agaagccaac tcccgtgcaa attgtaaaag ttgattaccc caaacggagc cgtgctaaga
     4441 ttgtcgaggc atactttcga caggcatcta ccacagacta ctctggtgtt tttaaaagac
     4501 attatattga ttttgaagcg aaagagacac gccaaaaagc atctatgccc atgaaaaatt
     4561 ttcatgcgca tcagattgaa cacatgaaac aggttgtaaa acaaggtggc atttgttttg
     4621 tccttcttca cttttcaaca ttaaaagaaa cctatctctt gccagccact catttgatcg
     4681 aattttatca agtagacatg ggtagtaagt cgatgcctct aacctttatt cgacaatacg
     4741 gctttgagat tcaaatgggg cgtttcccca gcatcccata tctggaaatc gttgaaaaaa
     4801 atctattagg tggtgaatct tttgaaaact acaacaatta aaaaagctct tctaatcact
     4861 gcaaatattt tactggcggg ggctatcatt gcctgcctgg ccggagctgc attggttgtt
     4921 tactacatcc aaagtgcccc agaattgaca gaagaatctt tgacagcaac tgtgtcaagt
     4981 aaaatttacg ataaaaacgg aaatcttatt gcagatttag gagcagaaaa acgttcgaat
     5041 gccaagactg aagaaattcc aacagacttg gtaaatgcga ttgtcgcaat cgaagaccaa
     5101 cgcttcttca atcatagagg ggttgacgtt attcgtattg caggttccct gattaataac
     5161 ttgagcggag gacgtttgca gggtggctcg acacttgacc aacagcttat caagctgact
     5221 tatttctcga catccgtaga agatcaaaat ctaaaacgga aaattcaaga ggcttggctg
     5281 gctactcaat tggaacgccg caataccaaa caagagattt tgacctacta catcaacaag
     5341 gtgtatatgt caaatggtaa ttacggtatg aagactgctg ctcttgcttt ttatggaaaa
     5401 gagttaaaag atttgactct tcctcaatta gctcttttag caggaatgcc ccaagcgcca
     5461 aaccaatatg atccttatac tagtccagaa gatgcaaaag aacgtcgcga tttggtattg
     5521 gctgagatgc tggaagaaaa gtacattgat aatacccagt atgaacaagc tgttctaaca
     5581 cctgtaacag atggtttgca accactatct actgcagctg cttatcctgc ttatatggac
     5641 aactatctga aacaagtcgt tgaagaagtt gaagcaaaaa caggttacaa cttgctgaca
     5701 acagggatgg atgtctatac aaacgtcgat cctgccgccc agcagcaact ttggaatatc
     5761 tacaatacag atatgtatgt cagctatcca gatgatttat tacaggtagc ttcaacggtt
     5821 gtggatgttt ctaatggtaa agtcgttgcg caattaggtg gtcgtaaaca ggagacaaac
     5881 gtctcgtttg gtaccaacca agccgttgaa accaaccgcg actttggttc tacaatgaag
     5941 ccaatcacag actatgctcc tgcttttgaa aacggcattt atacatctac agcagattta
     6001 atcttagacg gtccttataa ctatcctggc acaacaactc ctgtcaataa ctgggataaa
     6061 caatactatg gtaatatctc tgttaagact gctattcaat attctcgaaa tgttacagcc
     6121 gttaaagcat tggaagctac aggcttagaa aatgccttga aatttttgaa tagcgtcggt
     6181 atcgattacc ctgatattca ttactctaat gctatttcaa gtaatacatc cgatactagc
     6241 agtaagtatg gagcaagtag tgaaaaaatg gctgctgcct acgctgcttt tgccaatggt
     6301 ggcacttact acgctccaca gtatgtcaat aaaattgtct ttagtgatgg aacagtaaca
     6361 gaatatgctc ctaaaggaac caaagtcatg tctgccgaaa cagcctacat gatgaccgat
     6421 atgatgaagg ctgttatgtc ttccggttat ggattaaacg cttctgttag tggagttcct
     6481 atggcaggta aaacaggtac atcaaactat accgatagcg aaacggatac tattctagct
     6541 tcaattccag aagcaaatta tagctacatg gtcgttcctg atgaaaactt tgttggatat
     6601 tctagtcagt atgcaatggc tgtttggacc ggatatacca atcgtatgac tcctatcctt
     6661 gataacagca tgcgaattgc aacagatgtc taccacaata tgacgctctt tatgcattcg
     6721 gactatacag ctaccgattg ggagatgcca agcggactcg tacgttacgg ttccaactac
     6781 tatctcagag gtagtcgctc actatccaat gcttacaaca cgtacactag ctatagtaca
     6841 agttcttcta gttcgactga aactagcgaa acggccgaag cgacgacaac atcaagcgaa
     6901 acatcatctg gaacttcaac cgagactgca acttcttcaa ctgaaactgc aacaacagga
     6961 aacaatcctg cgacgggaca gacagatggt caataagaaa attcccagac tcttctgggt
     7021 ttttcttttg cttaaattat gataagataa gattatgaaa cctgaagtat tttataaaac
     7081 cttggcagac caaggtattc aattaagcga ccaacaaaaa caccaatttc atcgctattt
     7141 ccaactatta gtggaatgga atgaaaaaat caatctgaca gctattaccg aggaaagcga
     7201 agtctatctg aagcatttct acgattctat cgctccaatc ctgcaaggcc atattcagaa
     7261 cgaacctctt cggcttttag atattggagc tggagctgga ttccctagcc tacctatgaa
     7321 gattatcttt ccgcaactag atgttaccat cattgattct cttaataaac gaattaactt
     7381 tttacatttg cttgccgaag aactagagct cgaaggtgtt catttctatc atggtcgtgc
     7441 agaaaacttt gcacaagata agaacttccg tgcacaattt gaccttgtta cagcacgcgc
     7501 agttgcccgc atgcagattc tttctgaatt gactattcct tatttgaagc tcaacggaaa
     7561 attaatcgca ctcaaggcgt ccagcgcaga agatgaattg acccaagcaa aaaacgcact
     7621 caatctcctc ttcgcaaaag tcattgaaaa ccacgactat actcttccaa atggcgaccc
     7681 tcgaacattg accatcgtcg aaaagaaaaa ggaaactcca aacaagtttc cacgcaaagc
     7741 tggtatgcca aataaaagac ccctttaaac ataagaaaag aggctgggca aaaagctcaa
     7801 cctcgcttct cagggttcgt gtcaacatct cagcgcagtg gttgattggc tttaacagtc
     7861 cagtggactg ttaaaggttg gagataggat ttgcgaagca aatctcagca attcgtgttt
     7921 tacactccaa atctgaccat tacgactgtt gcgaacaaag ttcgcttcat ctccaacctc
     7981 caaaggttcc ccgaaccttt ggagctatgc gggggtggga gtgaaacagt ctggggatag
     8041 actgtttcag ctcaacaact taaaacgaaa aattgttgac gaactctttt tttgaccagt
     8101 cgagttcttt cccgctccct cttttattat ccaatttttg taatattggt tgcttgaaga
     8161 ccacgttggc cttgctccac ttcaaatgtc actttttgac catcttccaa cgatttgaaa
     8221 ccattagact gaatttcaga aaagtgtgca aatacatctg aaccgttttc ttgagcaata
     8281 aaaccaaatc ccttttctgc attaaaccat ttaactgtac cttgtaccat ttgtgttacc
     8341 tctttttatt tatttgtaaa acttatcaag aggaaaaaca aaagatgaaa ctgatactta
     8401 aactctaaat ttatttacat tccctactgt aacagtatat ttcctatatg tcaacgataa
     8461 agggttgata agtccaataa actcaataat catcgccacg gattatagaa acgcccctga
     8521 ttaacaaaaa atagatagat tgtcacgact actagagcaa gaataaatag caagacagcg
     8581 taatctattc tttgtagagg ctgttgggta taccatgttc tttttttatt ctttccaaaa
     8641 cgccgcaatt ccatagctgt tgaaatcgta tcaatcctct ccaaggagct gaaaatcaga
     8701 ggaatgacaa gtgatagatt cccttttata cgatccatca cttttccttt tctggacaat
     8761 tccaaaccac gcgcttcttg agacattcga atcgtataaa actcttcttg aatatctgga
     8821 atataacgca tggtcaaact gactgcgtaa gcaactttgt aggatacccc aatttgattc
     8881 aagctggaag caaactggct aggatgagtg gtcatgagaa agataatcgc taaaggaact
     8941 gtacaaaaat acttcaagag aagattcacc agataaaatg cttgctgact cgtcaaggaa
     9001 taaactccca gacctgatag caagggagtg tctgctccgt aaagttccac tccataccgt
     9061 ggtgcaaaca agtgaaccat cagggcattc attgcagcaa aaatgatcgt cagaattaaa
     9121 acaagagaga tttctttata acgaatccct gacattttga acaaggctag agaaaatact
     9181 gcgataaaaa gaatcaagcg ggtatcgtaa gtaatcatag caagaatgga aactatgaga
     9241 aaaaagagta atttactgac agccgataaa ctatgaatca agccagttcc tggatggtaa
     9301 ccaattagtt tttgttgact catcttcctc tcctttcttc ctgcatataa aacgtcgtta
     9361 attctaaggg attaactccc aacctctccg ccaagtgaaa aattgatgtt tcttttaaat
     9421 tggctcgctc aatcaccgta tcatcagata aaatttctgc tggactggca tcttcaataa
     9481 tctgcccatc caccacaaca acagctctat ctgaataatc tagcatgagt tgcatgtcat
     9541 gggtaatcat gacaatggtg tgcccttgag catttaattg atccaaaaac tccatcattt
     9601 cccgataatg tcgttgatct tgtcctgctg ttggctcatc cagcaaaata atttctggat
     9661 tgagaaccaa gatagatgct atcgttaccc gttttttctg cccatacgaa agtgccgaaa
     9721 tcggccaatt acgaaacgaa tacaggccac atactttcaa gatatggtga actcggtgtt
     9781 caatttcttc ttctgtcacc cctcgcatgc gcaaaccaag agcaacctca tcaaagatca
     9841 tcgtttggct aatcatttgg ttgggattct gaagaacata accaatccgt tctgctcgct
     9901 ctttgacaga atcttctttg attgactgcc ccttccagag aatctcaccc tcaccctgaa
     9961 taaaaccaca aagcaccttg gctaaagtag atttcccagc accatttttt ccaacaatag
    10021 ctagacgttc tcccttatga atcgtcagtt gaatatctgt aagaacttgt ttgttaggat
    10081 aggaaaaatg aagatgcttg acttctaaca aagcctcttt ctctccattt tcaaagtgta
    10141 gagtcggtag ggatgctata ttcaaagcct caatatcaat ttcccaaact gaagagaggc
    10201 gttctgcctg tgcaatcgga tatcctaagg cgcgaagagt cgatagatat aagggttcac
    10261 ggatgccgtt ttcctgtaac aatgaggtac gtaataaatc attcggtcct ccattgaaca
    10321 aaatccgacc gtcattaatc aatacaactc ggtccacctg acgatacagt acgtcctcta
    10381 aacggtgttc gataataatg gttgtggtcc cttcttgctt gtgcagacgg tcaatcaaat
    10441 caatcgtatc ttggcccgat ttggggtcta aattagcaag tggctcatca aacaacaaaa
    10501 taggactctc atcaataaga actccgccca gactgacacg ttgcttttga cctccagata
    10561 aatcttgtgg tcgatgtgct agtaaatcgg tcaaagacag tctttctgcc caatctccta
    10621 ctttttgctt catcaccacc tggctttcca tgtcgttttc caaagcaaaa gctaggtcct
    10681 cggcaactga taagccaatg aattgaccat ctgtatcttg aagaaccgtt gatatgagca
    10741 aggacttatc ataaattgaa agattaaaag cttcctgacc atccaatagt aaacttccgc
    10801 tatgttcccc cttgtaaata ttgggaataa taccattaag acattgtcca atcgtcgact
    10861 ttcctgaacc agatggacca ataatcagaa ctttctctcc ctgataaatc gttaactgaa
    10921 tatcttttaa agtgggttcc tgttgcgctt ggtatttaaa tgtaaaatct ttaaactcaa
    10981 tgattttttt cataagacta ttatagcgta aattgactct gaaaaaaagg aagaatcatc
    11041 agtttctccc ttttcaaata agttcatcca tgattctaga gcagatgaat tctaccttct
    11101 tgcctcacaa tcgcattaaa atgataccat caaggtccgt aaaacttgct ccataaaagc
    11161 cacgggcatc tgtcgggcat cctgtaattt gcccgctatt tgcttcaaca ctatccacgt
    11221 cttccctact cgccacatta agcgaaatca agacttcatt gtcactcgct actacctgaa
    11281 atggtacgcg ttgagcaaag ctatctgcct gcatcaaaat caagttgaca ccctcaggca
    11341 aagtcacaga cttaatatct ccaaacgtcg caactgcaaa aacgattgct tcataaaacc
    11401 gaccagctat tcaaggtctg ctaccgctaa tactcaatga aaatcaaaag taacctagga
    11461 aacgaagcga agatagaact gaagttcatc aaggcaaggt gacaacggat aattttattt
    11521 tcgaaaggga taagttcatc caaaatgact tcatcccctt ctcttttcta attgataggc
    11581 ttcgtataga atggactgaa aaaatataaa gaattctgat tgcacaaaaa aattgcactg
    11641 atttttcaat gcaattttgg tattactaag catttgctgg agtaagagtt tcctcaatcg
    11701 cttccaagcg ttttgcccat tcttgacgag tcaaaccgtt ttcagagatg taacggttgc
    11761 gctcatgagc acggcattca gctgaacagc cacgaacata cttgtgctca ttctcttctg
    11821 atgtcaaaat acgacggtta cagaatggat tgccacagtt gacatagcgc tcacatggtg
    11881 tgccatcgaa ccagtcctta ccaacgacaa ctgggtctac atggttaaca tcgaccgcga
    11941 tacgctcgtc aaagacatac atcttcccat cccacaattc gccacgaact tctgggtctt
    12001 taccataggt tgcgatacca ccgtggagct ggccgacatc tttatagcct tcacgaacca
    12061 tccagcctga gaatttttca cagcgaacac caccagtaca gtaaacaact acgcgcttgt
    12121 ccatgaattt ctctttgtta tcacgaaccc attgtggcaa ctcacggaag ttgcggatgt
    12181 ctggacggat cgcaccacgg aagtgaccaa ggtcatactc gtagtcatta cgtgtatcca
    12241 aaacaactgt atcttcgtcc aagagagctt ctttgaactc ttttggtgat aggtaggcac
    12301 ctgttgtcac gagtgggtca atatcgttgt caaagtcgtt gtcttccaaa ccaaggtgaa
    12361 caatttcttt tttataacga acaaacattt tcttgaaagc ttgctcattt tcttcatcaa
    12421 tcttaaacca caaatcgctg aacaatgggt ttgcatgaac gtagtccatg tacttttgag
    12481 ttgtttcata gtcaccagaa acagtaccgt tgataccttc gtcggcaatc aagatacggc
    12541 cttttagtcc gatagactta cagaaagcta gatgctcagc agcatattct ttggcatttt
    12601 caattggaac atacttgtaa tagagtagaa cgcgaatatc ttttgacata gtgtctcctt
    12661 ttcaatcttt gcaatagatg ataaaactct gtcatttcta ataaatgata ccttacgatt
    12721 atatcgttta gcccctcaaa agacaaaaat ctgaactgaa aatttagaac ctgtattcgc
    12781 agattcagtg cttatatgta aaaaatgagg ctgggcaaaa agaccaatgt cattaagtta
    12841 agcatttaaa caattaaagg aactattctc gtctgagcag ttcatgacca aacgggaata
    12901 gtttttgtat ttagggcgca caaaaagga
//
LOCUS       DASGAC010000048        12811 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.048, whole genome shotgun sequence.
ACCESSION   DASGAC010000048 DASGAC010000000
VERSION     DASGAC010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12811)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12811)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12811
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.048"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            281..499
                     /gene="nrdH"
                     /locus_tag="U1335_001041"
     CDS             281..499
                     /gene="nrdH"
                     /locus_tag="U1335_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-like protein NrdH"
                     /protein_id="HEM5231530.1"
                     /translation="MVTIYSKNDCVQCKMSKKFLDQHNVAYTEINLDEQPEYIEHVKS
                     LGFSAAPVIETANDVFSGFQPGKLKALV"
     gene            532..2691
                     /gene="nrdE"
                     /locus_tag="U1335_001042"
     CDS             532..2691
                     /gene="nrdE"
                     /locus_tag="U1335_001042"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000523276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HEM5231531.1"
                     /translation="MSLKELGDVSYFRLNNEINRPVNGQIPLHKDKEAVKAFFKENVL
                     PNTKQFDSILDKIAYLLEENYLEKEFLDQYSPEFIIKIDQFLKDQNFRFKSFMAAYKF
                     YNQYALKTNDGAYYLESMEDRVLFNALYFAEGDEELALNLANEMIHLRYQPATPSFLN
                     AGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLREAGAPIKGY
                     EGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLSTKKENADEKVR
                     VKTLSLGITVPDKFYELARKNEDMYLFSPYSVELEYGVPYSYLDITEKYDELVANPRI
                     RKTKIKARDLETEISKLQQESGYPYVINIDTANRSNPVDGKIIMSNLCSEILQVQTPS
                     IINDSQEYLTMGTDVSCNLGSTNIVNLMKSPDFGRSVRTMTRALTYVTDHSHISAVPS
                     IEAGNSQAHSIGLGAMGLHSYLAQNLIDYGSKTAVEFTNIYFMLLNYWTLVESNNIAR
                     ERKATFHNFDKSKYADGTYFDKYVTGDYQPQSDRVKELFEGIFIPSGQDWAELREKVM
                     ADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYPAAGLATETI
                     PFYKSAYDMDMRKVIDIYAAATEHVDQGLSLTLFLRSELPKELYEWKTENKQTTRDLS
                     ILRNYAFNKGIKSIYYIRTFTDDGEEVGANQCESCVI"
     gene            3374..4333
                     /gene="nrdF"
                     /locus_tag="U1335_001043"
     CDS             3374..4333
                     /gene="nrdF"
                     /locus_tag="U1335_001043"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004253599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit beta"
                     /protein_id="HEM5231532.1"
                     /translation="METYYKAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDW
                     RKLTAEEKDLVGKVFGGLTLLDTLQSETGVQALRNDIRTPHEEAVYNNIQFMESVHAK
                     SYSSIFSTLNTKSEIEDIFEWTNSNEYLQRKAKIINEIYETGTPLEKKVASVFLETFL
                     FYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDKLR
                     DWMYDLLYQLYENEEGYTRSLYDAVGWTEEVLTFLRYNANKALMNLGQDPLFPDSADD
                     VNPIIMNGISTGTSNHDFFSQVGNGYLLGEVEAMQDDDYLYGL"
     gene            complement(4369..5043)
                     /locus_tag="U1335_001044"
     CDS             complement(4369..5043)
                     /locus_tag="U1335_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5231533.1"
                     /translation="MLKFIKHVALLFLYFVAYQITSGFLMVGPTLQSIQDIPAQLIDS
                     TIWICAIIGLVLSIALIILLWKYIYPRHSVDYRVTALWFHKIQWPILLYIAFFIFQFI
                     VPVPESENQKLVIEFVSAYPLIAFSSVVVFAPILEELIFRGFLATYFFPKMVDIKAVG
                     IYLLVTGSLFSLVHMPATLPQFLIYFTMGLNLGWLYLIRRDIRYPIALHMLNNGISYL
                     MIVFLV"
     gene            complement(5053..5370)
                     /locus_tag="U1335_001045"
     CDS             complement(5053..5370)
                     /locus_tag="U1335_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231534.1"
                     /translation="MELFLWIVVGFLFFNSLSDRKKVKQLQARVKKLQKTTKGENQMS
                     VLLKELVGSKAKIRFDEEFSIAYEYTILAVDEEWVKISRELANGELETKLVRVDNIID
                     LSF"
     gene            complement(5380..6069)
                     /locus_tag="U1335_001046"
     CDS             complement(5380..6069)
                     /locus_tag="U1335_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5231535.1"
                     /translation="MNGLGNVKDWNVVKNWKFLLVGLVVVALNVLTQMAVFTLPNFDG
                     TNLLIAAALILLAVLLGLILTGKLGLWKGEQKWGMGANVGFVALAFIVMFGLKIIGGQ
                     LIMLEEGYGQTTANQEIINNSGLPVLLLFLFAVLFAPVLEELIFRGILMGKVFGKDSI
                     VGLLLSSFLFGLIHNPTNIGSWVVYGGMGLVLGLAYRISGKYTNALILHSLNNLLGFL
                     LMLLMQSLGLI"
     gene            complement(6095..6280)
                     /locus_tag="U1335_001047"
     CDS             complement(6095..6280)
                     /locus_tag="U1335_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231536.1"
                     /translation="MKFFKKIYLVLLIGLGLYAVGYIFGEWLATGQIDVSTLNILLPM
                     VLGLPALLLIEKESNEN"
     gene            complement(6300..6809)
                     /locus_tag="U1335_001048"
     CDS             complement(6300..6809)
                     /locus_tag="U1335_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3278 domain-containing protein"
                     /protein_id="HEM5231537.1"
                     /translation="MKKENLHIRAIRYFYDIVGELDEVSYAALTNFGNNMYMLFMTVT
                     LVSFLVSFALGEDVMGISLFLTLVYSQFKQDAIIKKLGLDKLFVAKDDVKMARKKMMK
                     RTLYQTLQIAVYSLLVSIGLWQFHIPQESGTSAAEYFQFVTPMTVVLLTLVGFLSFYI
                     VNRKKIKLI"
     gene            complement(6840..7598)
                     /locus_tag="U1335_001049"
     CDS             complement(6840..7598)
                     /locus_tag="U1335_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3169 family protein"
                     /protein_id="HEM5231538.1"
                     /translation="MKQGKQISTKQRWMRNLTYLFLGAIFGAFYGFFGVLISKFGLPP
                     FVNLDNFLFCLRIITFVIFAGTIYFGIKANQKYHLYHSISDEDEEHFDELYKKMYRNL
                     EYATISFNVAVSLTLLNLVLGFGVTFLEESAVMYGSILDVVFYVILLISQVFIVKLTQ
                     KIRDYKLSAFATVKEMKDFAEAMDEGEKQANYEMSFQIVFTLNQIVVPGLYLFLFVLS
                     MLLQERQIMAFLVVAFLHIYINVMQVRMVRRYFK"
     gene            complement(7595..7810)
                     /locus_tag="U1335_001050"
     CDS             complement(7595..7810)
                     /locus_tag="U1335_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019771076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5231539.1"
                     /translation="MEYVLKNRLKELRARDSLNQTELAKLAEVSRQTISLIERGEYTP
                     SVVIAMRIAQIFNENVENVFQLVEVEE"
     gene            complement(7823..8377)
                     /locus_tag="U1335_001051"
     CDS             complement(7823..8377)
                     /locus_tag="U1335_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3267 domain-containing protein"
                     /protein_id="HEM5231540.1"
                     /translation="MEAKKKLYEVDVRSDKKLAARLYVTTVLLVFPFYWLFGFIASRV
                     EFQNIMSEMQFIEVLFVFLLLIIIHEWIHGLFFKIFCPKNPVKYGIKWKTGMAYAISP
                     NSLYNRFQTVVIALAPFVLISLGLTASAMFGWLDKGAYQILATMHAAACIGDFYYTYL
                     LMTKFKEVAVEVAVTEKSLIIYQA"
     gene            complement(8518..8733)
                     /locus_tag="U1335_001052"
     CDS             complement(8518..8733)
                     /locus_tag="U1335_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231541.1"
                     /translation="MKKINSNKKGILITGTTVARVVEIGSILLLAYILLSDLLGWSDM
                     DTALMTILIASIACIEASLQMEKKGNK"
     gene            complement(8952..9854)
                     /locus_tag="U1335_001053"
     CDS             complement(8952..9854)
                     /locus_tag="U1335_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004299032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase family protein"
                     /protein_id="HEM5231542.1"
                     /translation="MGKCLVIGSTVCDVMIYLDALPGRQGDAHIKKQVMSLGGCAFNV
                     VNILHHLGVEYDFISPVGTGIYGTFVKDNLYKLGIQTPISLDGANGCCYCFVESDGER
                     TFLSDHGVEYSFDPAWLDGYDLSQYDYVYICGLEVEEDTGQALVDWLKTCGRPVIFAP
                     GPRGNLIPEKRMVRLLELSPILHLNEQEALSLSQETDIKTAIRVLYGKTKQLLIVTRG
                     SDGAVAFDGVWNEAPSVPTEIVDTVGAGDSHVGAMMAALATEKSVIDSLSFANRVASQ
                     VVATQGVHLPSHMFEELRSQLNSL"
     gene            complement(9977..12595)
                     /gene="alaS"
                     /locus_tag="U1335_001054"
     CDS             complement(9977..12595)
                     /gene="alaS"
                     /locus_tag="U1335_001054"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000661542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEM5231543.1"
                     /translation="MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSG
                     VATLKKYFDGSVIPDNPRITNAQKSIRTNDIENVGKTARHHTMFEMLGNFSIGDYFRD
                     EAIEWGFELLTSPEWFALPKDKLYMTYYPDDVDSYNRWIALGVEPSHLIPLEDNFWEI
                     GAGPSGPDTEIFFDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRS
                     EYKELPNKNIDTGAGLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMS
                     FKVIADHIRALSFAIGDGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETV
                     GNIMESYYPEILEKRAFIEKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGR
                     DIFKLYDTYGFQVELTEELAEHRGMTLDIAGFEAAMKEQQDRARASVVKGGSMGMQNE
                     TLAAITEESTFVYGQTALEASLSVIVADNARTEAVSEGQALLVFDQTPFYAEMGGQVA
                     DHGFVKNAAGDIVATVIDVQKAPNGQPLHTVELSASISVGQTYTLEIETKRRKGVEKN
                     HTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQIW
                     NAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTIGDYSVELCGGTHVGNTAEIGI
                     FKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVESLA
                     QQVRDLQKENAALKEKAAAAAAGDVFKDVKETNGVRYIASQVQVSDAGALRTFADNWK
                     QKDYSDVLVLVAAIGDKVNVLVASKASDVHAGNLIKVLAPIVAGRGGGKPDMAMAGGS
                     DASAIQTLLNSVAENL"
BASE COUNT         3963 a         2883 c         2349 g         3616 t
ORIGIN      
        1 acattttata acactgcatg tttccttcaa aatattatga catttgtaaa aaagctgatt
       61 tatactttac cgagagattg ttagggttat caaactaaat agaaacagct atgtaaacgc
      121 tattttttga cttggcagca ttggacggat gtacaatata tggtgtctta taaaaatatt
      181 gtgcactata ttttgtgatt ttaataaact tccttcttga ctttgacccc aaaatctagt
      241 atcctagatt ggtgaattta atcaataaag gagaaataga atggttacta tttattcgaa
      301 aaacgattgt gtacaatgca agatgagcaa gaaatttctt gaccaacaca atgtagccta
      361 tactgaaatc aacttagacg aacaaccaga atacatcgaa catgtgaaaa gccttggttt
      421 ctcagccgca cctgttatcg aaactgcaaa tgatgttttc tcaggttttc aaccaggaaa
      481 actaaaagcc ttggtttaac tccctactgt ttatagaaag agattgcgac tatgagttta
      541 aaagagctag gcgatgtgtc ctacttccgt ttgaataacg aaatcaaccg tcctgtcaac
      601 ggacaaatcc ctctccacaa ggacaaagaa gctgtcaagg ctttcttcaa ggaaaatgtc
      661 cttccaaata ccaagcaatt tgatagtatt ttagacaaga ttgcttatct attagaagaa
      721 aattacctcg aaaaagagtt tttggaccaa tacagtccag aatttatcat caaaattgat
      781 caattcttga aagaccaaaa tttccgcttc aagtctttca tggcagccta caagttttac
      841 aatcagtatg ccctcaaaac caacgacggt gcctactact tggaaagcat ggaagaccgt
      901 gttctcttca acgccttgta ttttgctgag ggcgacgaag aattagcact aaacctggcc
      961 aacgaaatga ttcatcttcg ttaccagcca gcaacaccgt ctttcctcaa cgcaggccgt
     1021 gcccgtcgtg gtgagttggt gtcttgtttc ctcattcaag tcactgacga tatgaactcg
     1081 attggacgtt ctatcaactc tgctctgcaa ttgtcccgta tcggtggtgg tgttggtatt
     1141 tcccttagca acttgcgtga ggcaggtgct ccaatcaagg gctatgaggg ggcagcttct
     1201 ggggttgttc ctgttatgaa actctttgag gacagcttct cctactccaa ccaacttggg
     1261 caacgccaag gtgccggtgt cgtttatctt gatgttttcc acccagatat tatttccttc
     1321 ctttcgacta agaaagaaaa tgccgatgag aaagttcgtg tgaagacctt atcactcggt
     1381 attaccgttc ctgataaatt ctacgaattg gcacgtaaaa acgaagatat gtacctcttc
     1441 agcccatact cagttgagtt ggaatacggt gtcccttaca gctaccttga catcacagaa
     1501 aaatacgatg aattggtagc aaacccacgc attcgtaaga caaaaatcaa ggcacgtgac
     1561 ttggaaacag aaatttccaa actccaacaa gagtctggat atccatacgt tatcaacatc
     1621 gatacagcca accgtagcaa ccctgttgac ggcaagatta tcatgtcaaa cctctgttca
     1681 gaaattctac aagtccaaac gccaagcatt atcaacgact ctcaggaata cttgactatg
     1741 ggaacagacg tgtcatgtaa ccttggttca accaacatcg tcaacctcat gaagtcacct
     1801 gactttggac gttctgttcg tacaatgaca cgcgctttga cttatgtgac ggaccactcg
     1861 cacatttctg cagtaccgtc tattgaagca ggaaacagtc aggcgcattc aatcggtctt
     1921 ggagctatgg gacttcattc ttacttggct cagaacttga ttgattacgg ttcaaaaact
     1981 gccgtagaat ttaccaacat ctacttcatg ctcctcaact actggacctt ggtagaatca
     2041 aacaatattg cccgcgaacg caaggcaacc ttccataatt ttgacaaatc aaaatacgca
     2101 gacggtactt atttcgataa atacgtgact ggtgactacc aaccgcaatc tgaccgcgtc
     2161 aaagaacttt ttgaaggcat tttcattcca agtggacaag attgggcgga gcttcgtgaa
     2221 aaagtaatgg cagatggtct ctatcatcaa aaccgtctag ctgttgcacc gaatggatct
     2281 atcagctata tcaacgatgt ttctgcttct attcacccaa ttacccagcg gattgaagaa
     2341 cgccaagaga agaaaatcgg taaaatctac tatccagcag ctggtttggc aacagaaacc
     2401 attccattct acaaatctgc ctacgatatg gatatgcgaa aggtcattga tatctacgct
     2461 gctgcaacag aacacgtcga ccaaggtttg tcactcactc tcttcctccg cagtgagctt
     2521 ccaaaagaac tctacgaatg gaaaacagag aacaaacaaa ctacgcgtga cctctctatc
     2581 ctccgtaact acgccttcaa caaaggtatc aagtctatct actacattcg tacctttacc
     2641 gatgacggcg aagaagtcgg cgcaaaccaa tgtgaaagtt gtgtgattta agatgtgagg
     2701 gcgtcaaaag gacaccgcaa aaataggaaa taccgcagag atgtcttgca tctcaaaggg
     2761 atttatcttt tttgccaagt ccttagcccg aacttgattt tgacgtagca agcttagctg
     2821 ttggctagcc aactagctaa tctacgccaa ccgctatgag cggattggct agctacctca
     2881 ctaactccga aactgaagaa atatcgtctt cagtttctac gtgtcgtaag atgtgagggc
     2941 gtttcaacag tctgggggac tgttgaaagt tggaaatgag aaaataggaa ataccgcaga
     3001 gatgtcttgc atctcgtagg gatttatctt ttttgccaag tccttagccc aaactcgatt
     3061 tcgacgtagc aagattagct attggtaagc caactagcta atctacgcca actgcgctat
     3121 gagcggatta gctagctacc tcactaactc cgaaactgaa gaaatatcgt cttcagtttc
     3181 tacgtgtcgc aatacactaa taccaaagta tctaatgaat gaacggtact gaccatatag
     3241 tcagtaccta gtcgttcacg atgtgaagca actaataagc aatcaattaa aatccctttt
     3301 aggggatttt tttacaggct actatctatt tgtgatataa tatttgaagt ataagaaaaa
     3361 gaaagagaat atgatggaaa cctactacaa agccataaac tggaacgcca ttgaggatgt
     3421 tatcgacaag tcaacttggg aaaagttgac cgagcaattc tggctcgata cacgtatccc
     3481 attatcaaac gacttggatg actggcgtaa acttactgcg gaagaaaaag acctagttgg
     3541 taaggtcttt ggtggattga ccctcttgga tacccttcaa tctgaaacag gtgtccaagc
     3601 tcttcgcaac gatattcgta caccgcacga agaagctgtt tacaacaaca tccaattcat
     3661 ggagtcagtc catgccaagt cttactcttc tatcttctca accttgaata ccaagtctga
     3721 gattgaagac atctttgaat ggaccaacag caacgaatat ttgcaacgca aggcaaagat
     3781 tatcaacgaa atctacgaaa ctggtacccc tcttgagaag aaagttgcca gcgtattcct
     3841 agaaaccttc ctcttctact ctggtttctt cacgccactc tactaccttg gtaacaacaa
     3901 gctggccaac gttgcggaaa tcatcaagct gatcattcgt gacgagtctg tgcacggtac
     3961 ctacatcggt tacaagttcc aacttggttt caatgaattg tccgaggaag aacaggacaa
     4021 actccgcgac tggatgtacg accttctcta ccaactttac gaaaatgaag aaggttacac
     4081 acgctccctc tatgacgcag tcggctggac agaggaagta ttgaccttcc tccgttacaa
     4141 tgccaacaag gctctcatga acttgggtca ggatccactc ttcccagatt cagcagatga
     4201 tgtcaaccca atcatcatga acggtatctc aaccggtaca tctaaccacg acttcttctc
     4261 ccaagtcggt aacggctatc ttcttggtga agtggaagct atgcaggacg atgattatct
     4321 ttacggttta taatcaaaaa aagcagttca atccgagctg cttatttttt ataccaaaaa
     4381 tacaatcatc aaataagaaa taccgttgtt gagcatatgt agcgcaatcg gataacgaat
     4441 atcacgtcta atcagataga gccaaccaag attgagtccc atcgtgaaat aaatcaaaaa
     4501 ttggggaaga gttgctggca tatggaccag actaaataaa gaccccgtta caagtagata
     4561 gattccaaca gcctttatat ctaccatttt agggaagaaa taggtcgcta aaaatccacg
     4621 aaaaatcaat tcttctaaaa ttggagcaaa aaccactact gagctaaatg caatcaaggg
     4681 ataagctgat acgaattcaa tcaccagctt ctgattttca ctttctggga ctggtacaat
     4741 aaattggaag ataaaaaatg caatatagag taatatcggc cattgaatct tatggaacca
     4801 taaagctgtc acacgatagt caacagaatg acgtggatag atatacttcc ataacagaat
     4861 aatgagcgca atggagagaa caagaccaat tatcgcacaa atccaaattg tactgtcaat
     4921 caactgggca ggtatgtctt gtatgctttg taaagttggt cctaccatta gaaaaccaga
     4981 tgtaatctga taggcaacaa agtatagaaa tagtaatgcg acgtgtttga taaattttaa
     5041 cataatccct ccctaaaagc tcaaatcaat aatattatcg actcgtacca acttggtttc
     5101 aagctcccca ttcgctaatt cacgagaaat tttaacccat tcctcatcaa ctgccaaaat
     5161 ggtgtattca taagcaatag aaaattcctc atcaaagcgg attttggctt tacttccgac
     5221 caattctttc aataaaactg acatctgatt ttctcctttt gtagttttct gcaacttttt
     5281 taccctagct tgcaactgct tcactttttt cctatctgat agagaattga aaaatagaaa
     5341 tcctactaca atccataaaa atagttccac cctatcctcc tatatcaagc ccagactttg
     5401 catcaatagc atcaacaaaa atccgagaag attattgaga ctgtgtagga taagtgcatt
     5461 ggtatatttg ccagaaatac gataggcgag tcccaggacc aggcccatac ctccgtagac
     5521 aacccaagat ccgatattgg tcggattgtg aataagtcca aacagaaaac tcgatagcaa
     5581 taatcctaca atcgaatcct taccaaagac tttacccatg agaatgccac ggaaaattaa
     5641 ttcttcaaga actggagcaa aaagtacagc aaagagaaac aagagcaaga ctggcagacc
     5701 agagttattg atgatttcct gattggcagt tgtttgacca tagccctctt ccagcataat
     5761 caattgccca ccaattattt tcagaccaaa cataacgata aaggcgaggg ctacaaaacc
     5821 aacattcgca cccatccccc acttctgctc acctttccac agacctaatt taccagtcaa
     5881 gataagacca agcaatacag caagcaatat gagcgctgca gcaatcagta ggttagtccc
     5941 atcaaaattt ggtagagtaa acacagccat ctgggtcaat acattcagtg caacgacaac
     6001 cagtcccact aagagaaact tccaattttt aaccacattc caatctttga catttccaag
     6061 tccattcata gcaatctcct tcacatacac taagtcagtt ttcattactt tctttttcga
     6121 tcaatagcag agcaggcaag cccaaaacca tcggcaagag gatattcagg gttgacacat
     6181 caatctgccc agtagccagc cactctccga aaatatagcc aactgcgtac agaccaagac
     6241 cgattaatag gacaagataa attttcttaa agaatttcat gagttgacct ccatttaaac
     6301 taaataagtt tgattttctt acggttaaca atatagaaac taaggaatcc aacaagagtc
     6361 agcaggacaa ctgtcatggg cgtgacaaac tggaaatact ccgctgcaga ggtaccactt
     6421 tcttgtggga tatgaaactg ccaaaggcca atactaacta gcagactgta gacagcaatc
     6481 tgtagggttt gatacagagt tcgtttcatc attttcttcc gagccatttt tacatcatcc
     6541 ttggcaacaa acaatttatc cagacccaac tttttgataa tggcgtcctg tttgaattga
     6601 gaataaacca atgtcaagaa gaggctgatt cccatgacat cttctcccag cgcaaagcta
     6661 actaggaagc tgaccagtgt cactgtcata aagagcatat acatattatt gccgaaattg
     6721 gtcaaggccg cataagacac ctcgtctaac tcaccaacaa tatcatagaa ataacgaatt
     6781 gctcgaatgt gtagattttc ctttttcata gctatcacct aaaactcttt caaaaattct
     6841 tatttaaaat aacgacgaac catacgaacc tgcatgacgt tgatgtaaat gtgaagaaag
     6901 gcaacaacta gaaaggccat aatttgtcgc tcctgcaata gcatactgag tacaaatagg
     6961 aatagataca aacctggtac cacgatttga ttcaatgtga agacgatttg gaaactcatt
     7021 tcgtagtttg cttgtttctc accctcgtcc atcgcctcag caaagtcttt catttctttc
     7081 accgtagcaa aagcggacaa cttatagtca cgaattttct gagttagttt cacaataaaa
     7141 acctgagaga tgagaaggat aacatagaaa actacgtcaa gaatggaccc atacataact
     7201 gcactctctt ctaagaaagt gaccccgaat cctaaaacca aatttaacaa tgtcaatgat
     7261 acagcaacat tgaatgatat ggtcgcatat tctaggttac gatacatttt tttatacagt
     7321 tcatcaaagt gttcttcatc ctcatctgaa atagaatggt aaagatgata tttttgatta
     7381 gctttaatac caaaatatat ggttccggca aaaattacaa aagtaatgat acgcaaacaa
     7441 aatagaaagt tatctagatt gacaaaaggc ggtaatccaa acttagaaat caatactcca
     7501 aaaaagccat aaaatgcacc gaaaattgct cctaaaaaca aataggtaag attcctcatc
     7561 catctttgtt tcgttgaaat ttgtttccct tgtttcattc ttctacctcc actaattgaa
     7621 agacattttc cacattttcg ttaaaaattt gagcaattcg catggcaatg accaccgagg
     7681 gcgtatattc cccacgctct atcagactaa tggtctgccg tgatacttct gctaattttg
     7741 ccaactcagt ctggttgagg ctatctcgtg cccgcaactc cttgagccga ttttttaaga
     7801 catattccat aaattttcct ttctaggctt ggtagataat caagctcttt tctgttacag
     7861 ctacttctac cgccacctct ttgaattttg tcatcagtaa gtaggtataa tagaaatccc
     7921 caatacaagc tgctgcatgc atggttgcta gaatctgata agcccctttg tcaagccaac
     7981 caaacattgc agatgctgtc aaccccaaac taatcagaac gaaaggagca agggcaatta
     8041 caactgtttg gaaacgatta taaagggagt tgggactgat tgcataagcc atacctgttt
     8101 tccatttaat tccatatttg acaggatttt tgggacaaaa aattttaaaa aacagtccat
     8161 gaatccattc atgaatgata ataagcaata gaaaaacaaa tagtacttca atgaattgca
     8221 tctcactcat gatattttga aactcaactc tagaagctat gaatccaaat agccaataga
     8281 acggaaacac taataaaact gtagttacgt ataaccttgc tgccaacttt ttatcacttc
     8341 taacatctac ttcatataat ttctttttcg cttccatgtt tcttctcctt ctatttcacc
     8401 tagctcaaac tcaataaacc tagagcaact ccaatcaata atccgacaat acaggattct
     8461 gcaatcataa tcgctgccat atctgctgaa atgtgtcgtt tcatggtcta tctccttcta
     8521 cttatttcct tttttctcca tttgtaaact tgcttcgata caagcaattg aagcaattag
     8581 aatagtcatt agagctgtat ccatatcgct ccatcctagc aaatcagaaa ggagaatgta
     8641 agccaataat agaatggacc ctatttcgac tacacgcgca acggttgttc ctgtaatcaa
     8701 aattcctttt ttattgctat ttatcttttt catggttata ccccaacttt ctttttcttg
     8761 tctgatgaat tcgttttcac ctcttatctt gatatcattg taacacttct ttttcttttt
     8821 gacaagtatc tttgtcaaaa aaataataat ttttgtcaaa aagtttatga acattgtcaa
     8881 aatgtagtga atattggtca gaaaaaaaaa gaccttttga ggtctttact atattttggt
     8941 gaagtatttg attacagact gttcaactga ctcctcaact cttcaaacat gtgacttggt
     9001 aaatgaactc cctgtgtagc gacaacttga ctagcaactc gatttgcgaa tgaaagagaa
     9061 tcaataaccg atttttccgt ggctaaagct gccatcattg cccccacatg actatcacca
     9121 gcaccgacag tatctacaat ttctgtgggt acactcggtg cctcgttcca aactccgtca
     9181 aaagcaacgg ctccatctga acctcttgtc acaataagca gttgcttggt ttttccatat
     9241 aatacacgaa tcgctgtttt aatatctgtt tcttgagaaa ggctcaatgc ctcttgctca
     9301 tttaaatgta aaataggaga tagctctaac agccttacca ttcgtttttc aggaatgaga
     9361 tttcctcgtg gtccaggagc gaagatgact ggcctgccgc atgttttcaa ccagtcaact
     9421 aaggcttgtc ctgtatcttc ttctacttct aaaccacaaa tataaacata atcatactga
     9481 gatagatcgt agccgtctaa ccaagcggga tcaaacgaat attccacacc gtgatctgac
     9541 agaaatgtcc gttctccatc tgattccaca aaacagtaac aacaaccatt tgctccatct
     9601 aaagaaatcg gcgtttgaat gcccagttta tagagattat ctttcacaaa tgtaccatat
     9661 attcctgtac caaccggtga aataaaatca tattccactc cgagatggtg gagaatattg
     9721 actacattga aggcacaacc tccaagagac atgacttgtt tttttatgtg cgcatcaccc
     9781 tgtcggccag gtaaagcgtc taaataaatc attacatcac aaactgttga gcctatgacc
     9841 aaacatttcc ccatttttgt tgctcctctt gttcccattc atccaattca attttcacag
     9901 catgatacat tagagatatt tcaattatac caaaaaactc ttttacccag aggataaaag
     9961 agtttcattt gttaaattac aagttttcag ccacgctgtt caagagggtt tggattgcag
    10021 acgcatcgct accacctgcc atggccatat ccggcttacc gccaccacga cctgctacga
    10081 ttggcgcaag gactttgatg aggtttcctg catgaacatc gcttgctttg cttgccacaa
    10141 ggacattgac cttgtcgccg atggccgcaa ccaacaccaa gacatcagag tagtcttttt
    10201 gcttccagtt gtcagcgaag gtacggagag cacctgcatc tgaaacttgg acctggctag
    10261 caatgtagcg aacaccattt gtctctttaa catctttgaa gacatcacca gcagcggctg
    10321 ccgctgcttt ttctttcaga gctgcatttt ctttttgcag gtcacgcact tgctgagcaa
    10381 gactttcaac cttgtttggt acttccttga tctgtggtga cttgatggtt gctgccactt
    10441 ctttgagggc atcttcttgg tcacgatagg caaggaaggc ttcacggcct gttaccgcaa
    10501 tgatacggcg agtacctgaa ccaatacctt cttctttcaa aatcttgaag ataccaattt
    10561 cagcggtgtt gcctacatgg gtaccaccac agagttcgac agaatagtca ccaattgtca
    10621 ctacacggac ttctttaccg tatttttcac cgaagagggc catagcaccc atttccttag
    10681 ctgtgtcaat atcagtctca accgtcacaa ctggaatagc attccaaatt tgctcattga
    10741 cttcttcttc aatacgacga agttcttccg cagtaactgc ctcaaaatgc gtaaagtcaa
    10801 agcggaggaa gtcttgctcg ttcaaggaac cagcctgtgt tgcatgctcg ccgataatat
    10861 tgtgaagagc tgcatggagc aagtgagttg ctgtgtggtt cttctcaaca cccttacggc
    10921 gttttgtttc gatttcaagt gtgtaggttt gaccaactga aatacttgcg gacagttcaa
    10981 ctgtgtgcaa tggctgacca ttcggtgctt tctgcacatc gatgacagtc gcaacaatgt
    11041 ctccagcagc atttttcaca aaaccatggt ctgcaacctg accacccatt tcagcgtaga
    11101 atggtgtttg gtcaaagaca aggagggctt gaccttctga gactgcttct gtacgcgcat
    11161 tatcagccac aatgacagat aagcttgctt caagagctgt ttggccgtaa acaaaggtcg
    11221 actcttctgt gatagcagcc agggtttcat tttgcatacc cattgaacca cctttgacaa
    11281 ctgaggcacg tgcacggtct tgttgctctt tcatagccgc ttcaaaacca gcaatatcaa
    11341 gggtcattcc acggtgctca gccaattctt ctgtcaattc tacttggaaa ccataggtat
    11401 cgtagagttt gaaaatgtca cgaccatcaa tctcagactt accttctgct gctaatttat
    11461 ccatcaattg ctcagcaaat tgtgaacctg tatggatagt acgagcaaat gactcttctt
    11521 cactcttaac aatcttctca atgaaggcac gtttttcaag tatttctgga tagtagcttt
    11581 ccatgatatt gccaactgtc tccaccaatt tgtacaagaa tggctctgta atgcccaaac
    11641 gttggccatg catagaagca cgacgaagca aacgacgaag gacataacca cgaccttcat
    11701 ttcctggaag ggcaccatca ccgatggcaa atgacaaagc acggatatgg tctgcaataa
    11761 ccttgaagct catgttgtcg ccatcttggt cataggtctt accagaaatc ttttctactt
    11821 cacgaatgat tggcaagaag agatccgttt caaagttggt cttagcccct tggaaaatag
    11881 ctgccaaacg ctccaaacct gcgcccgtat cgatgttttt gtttggcaat tccttgtact
    11941 cagaacgcgg aacagctggg tctgcgttga actgggacaa tacgatattc caaatctcga
    12001 tgtaacgatc attttcaata tcttcttcca agagacggat accaatgttt tcagggtcaa
    12061 agtcagtacc acggtcgaag aaaatctccg tatctggacc agaaggacct gcaccaattt
    12121 cccagaagtt atcttcaagt ggaatcaagt ggcttggctc aacaccaagg gcaatccaac
    12181 gattgtatga atccacatca tcaggatagt aagtcatgta gagcttgtct tttggcaaag
    12241 caaaccattc tgggcttgtc aagagctcaa agccccattc aatcgcttca tcacggaagt
    12301 aatctccgat agagaagtta ccaagcattt caaacatggt gtggtggcga gctgtcttac
    12361 caacgttttc aatatcgttg gtacggatgg atttttgggc atttgtaatc cgtgggttat
    12421 ctggaatgac agagccatcg aagtattttt ttagagttgc cacaccagag ttgatccaca
    12481 aaagagttgg atcgtttact gggacaagat ttgctgaagg ctcaacagag tgaccctttg
    12541 atttccagaa atccaaccac atttgacgaa tttgagcaga agataaattt ttcataagtt
    12601 aagataccaa gagcgttaag aaagcgagaa gaaaatagga gaccaacgct gtgcgccagc
    12661 gtactaggtg gtctatcttt ttctcgacgc ttttagctcg ggttcaattc agaaaattat
    12721 ctaaattgaa catttccttt cataagtgat ggttaggcgg gttcaattta acgaaacagt
    12781 taaattaaac atttcctttc atatttgata a
//
LOCUS       DASGAC010000049        12756 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.049, whole genome shotgun sequence.
ACCESSION   DASGAC010000049 DASGAC010000000
VERSION     DASGAC010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12756)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12756)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12756
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.049"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..425)
                     /locus_tag="U1335_001055"
     CDS             complement(<1..425)
                     /locus_tag="U1335_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HEM5231544.1"
                     /translation="MLDQIKAHLLDSINNIVSSANQFVLHPEKDFSRQSQLTMKTMIQ
                     AILTMGGNTLAKELLDLDLPVSQSAFVQRRYQIKHQAFKTLFRDITSKIPISDNLPIL
                     AVDGSDVILPRNRSDKTTSFQTGPHNIPYNLIHINALYNL"
     gene            617..1048
                     /locus_tag="U1335_001056"
     CDS             617..1048
                     /locus_tag="U1335_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM5231545.1"
                     /translation="MDTKFSVALHILTMISESKEILSSQALAESVGTNASYIRKVIAL
                     LKNASLITSHQGRSGYQLSKSPKDISLLEIYLATQEVEHIRLFQIHQNANLTCPVGQH
                     IEGAMVPIFSSVEQELENQLSRQSLDNVITNLYQSAQVTRI"
     gene            1128..2129
                     /locus_tag="U1335_001057"
     CDS             1128..2129
                     /locus_tag="U1335_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEM5231546.1"
                     /translation="MKAAQHTSYNKNNIALNLTEIVKPQIKPNQVLVKVTAAGVNPLD
                     NMILRGDVKLIVPYKLPQTAGNEVVGLVEEVGSSVTTFAAGDRVFGRLPLDSIGAFAE
                     YVAVDAQALAKVPAYLTDEEAAAVPLTALTIMQALDLMGAEAGKTIFISGGTGGVGGM
                     AIPIAKAKGLTVITNGDGANAERVLSLGADRFIDYKTEDYTKTLSNIDYVLDTLGGAE
                     TEKQMSIMKKGGQLVSLRAMPNGEFAKRMNLPKWKQILFGLAGRSFDKMAKKYGVHYH
                     FIFVESNGRQLQEVADIFSKLEIKPSIDTVYPFEEVNAALDKVANGRSRGKTVLSFN"
     gene            2156..3001
                     /locus_tag="U1335_001058"
     CDS             2156..3001
                     /locus_tag="U1335_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM5231547.1"
                     /translation="MSYITTKNQYITVSNNKIAYRELSKGKSDIPLIMLVHLAATLDN
                     WDPKLLDLLAEQHHVIVLDLPGVGASQGKVAPTIPGMAEQAVSIIKALGHEKINLLGL
                     SMGGFIAQEIVRLDSQLVNRLILAGTGPRGGFEVDKVTGKTFRYMLKAGLERVDPKRY
                     IFYNHDEAGRLEAEKVLGRMGQRSAAHADKDMNVPGFLTQLKAIKRWGREPQDDMTFI
                     TQPTLIVNGDKDMQVPTENSYTMHEKIKNSQLIIYPNAGHGSIFQNAEEFSKALLAFL
                     EESNA"
     gene            2994..3863
                     /locus_tag="U1335_001059"
     CDS             2994..3863
                     /locus_tag="U1335_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM5231548.1"
                     /translation="MPKTILITGSTDGIGKHLAMKLASEGHEVILHGRNSEKLRVALS
                     DIQLKTGNKKIHGYLADFSKLADVYRFGQEIKRDFEQIDVLVNNAGAYFGDARVATAE
                     NIEMTFMLSVQVPYILTTELLPLLEKARGRVIHTSSFMHHFAQTRGLDFGLEQSYSAA
                     MAYNNAKLYTIWLAIAQAEALEKQGSSVTVNAYHPGLIATNLGNDGVKRNLRSRILTS
                     LMKPFSKDLDQGIETGYYLSLSPEVAGVSGRYFSEKKVARVSLKGFDVAKSQALLAYL
                     DKKIQVFKESDSD"
     gene            3856..5067
                     /locus_tag="U1335_001060"
     CDS             3856..5067
                     /locus_tag="U1335_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase/NADH oxidase family
                     protein"
                     /protein_id="HEM5231549.1"
                     /translation="MTKILLEKLQLPNGQVLDNRFFKSAMSETLADSQGAPSDDLIAL
                     YDFWAKQGMGVLVTGNVMVDGRYLGEPGNVVLDSDDHLAQFRKWAAIGKKNGVPIWLQ
                     LNHPGKQMYRSINQTPIAPSAIPISGDSASAFRPPREMTVFDIKEARDKFIAAGLRAK
                     AAGFTGVQLHAAHGYLINQFLSPADNQRTDRYGGSLDNRMRFLVEIYQGLREKVGPDF
                     TIALKLNASDFKEEGFGFEDCKHVVKTMSDLGIDLIEISGGNYETPVFGSEYENGAGF
                     VTYALALADLTSVPIVSTGGFRKVTQMEEAIKDGVSMIGLARPFVLHPSLVNDYRQDG
                     DVQLTTPRLTTGLPKLDKALGPIIGVSYYEAQMKGLAKGKSVTISQHAWPYLLQTVKA
                     HGLSALKPRRK"
     gene            5222..5470
                     /locus_tag="U1335_001061"
     CDS             5222..5470
                     /locus_tag="U1335_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231550.1"
                     /translation="MSFLEANEKIAEKVVGAHKAIEKTVVGGYKATENAAVSGFNTIS
                     DKFIGAFFTKDNETVEEAKARMSKMDFNQPNSSKGDDK"
     gene            5526..5894
                     /locus_tag="U1335_001062"
     CDS             5526..5894
                     /locus_tag="U1335_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009854296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231551.1"
                     /translation="MKKRDFISLIAYTVSLLVLALGMCFYTLPEWEMTTLGMPLSVAG
                     LLLLALSWVLQRKLAGKGAPKFDWKQIVKVIYCVFALLVFGGGFALVTTGNFVLGLVL
                     GLVGLILVIGMIPVTVGLKN"
     gene            complement(5922..6470)
                     /locus_tag="U1335_001063"
     CDS             complement(5922..6470)
                     /locus_tag="U1335_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM5231552.1"
                     /translation="MTESAKTKLQQALIFLLDKEDFERISVSKICKQAKVHRSTFYHY
                     YDNQFDLLEDANQFLTQLFLTKFPSHNLSNINIEADLTGDAYLIPYLQFVKDHQKIYQ
                     IYLHHELDFHHKEHFEHLLATIFTPRFHAQGIQNPVQIAYVSSFFLAGITQVVSKWVR
                     NGCAESIDEMADIIQICIFRKQ"
     gene            6848..7477
                     /locus_tag="U1335_001064"
     CDS             6848..7477
                     /locus_tag="U1335_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013643376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEM5231553.1"
                     /translation="MKIAVVAANGKAGSLIVKEAAARGFEVTAIVRSENKTVAQQVLQ
                     KDVFDLTADDVIGFDAVVDAVGAWTADTVHVVPDAAKHLAAILKDSQTRLLVVGGAAS
                     LYVNPERTLTVADVTEFPSEVLPVLNAHKEALEALRQVDDVNWTYVSPAGDFQADGER
                     TGRYILGGEELVLNSKGESVISYADYAIGMIDEIASGDHLKARISLVSE"
     gene            7487..7936
                     /locus_tag="U1335_001065"
     CDS             7487..7936
                     /locus_tag="U1335_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM5231554.1"
                     /translation="MQISNKFTIAIHALAFIHLFQDQQRVTSKVLANSIQANPVIIRS
                     VLSGLKDAGIVDAKQGSGGFRLAKPLDDISLYDIFVTVDNIDKKGLFNFHENPHPDCI
                     VGGNIHAAVDDKLVQVQTAMEKELKTMYMSDVLVDLEKAIEEKVKRT"
     gene            complement(8432..8941)
                     /locus_tag="U1335_001066"
     CDS             complement(8432..8941)
                     /locus_tag="U1335_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEM5231555.1"
                     /translation="MERVKRKESLFVGSVVEALWELLEDKSFEKISVSELVERAGVGR
                     VTFYRNFSNKEEVLERSFNLELQAWLTKRQIDLSDWSDAHLLLALRQFFDFWYEQQDK
                     IRLLTANHLDYLLEEVLDSYFKERLGDLTDDFHLQFIVGGFFRVLKTWVARGCQESPD
                     DIMRLMGKQ"
     gene            9083..10201
                     /locus_tag="U1335_001067"
     CDS             9083..10201
                     /locus_tag="U1335_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pectin acetylesterase"
                     /protein_id="HEM5231556.1"
                     /translation="MKKVWKIVAAVTVVLALLGFIAYKKTFGWSAPELVHQTPQVNEW
                     YSLSPDGVVDSQGNQAHGLLRIGKEKNKVMVYFFGGGVSINEETASGGTRYFATTTGH
                     QDYVATWGIGSPQEDNPFKDWTMIVLPYGTGDFHAGTQNFTYVDDKGKEQTIYHQGYN
                     NLSSILAAAKPHVGNPDTLLVTGFSAGGFATSLLADDVISHFPTAKNVTVAVDSSFLR
                     HDNWKSIAENVWKTPTSISDRLHSDNIVLDSLVALHEKRGDSVKILFDISYRDGILQQ
                     YQAYIDQGQLADATEESSEHFQKELKKMIQELQSKIDGVGIFIWNYGQDENTTATQHT
                     TINFSTFFTPMSQDKSVAEWLDDAVNGEVKSYGLELLD"
     gene            10211..11230
                     /locus_tag="U1335_001068"
     CDS             10211..11230
                     /locus_tag="U1335_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM5231557.1"
                     /translation="MKKFKKIILWILGIVASLGIIAYVSVTNHPQLMVGVIQSFMYKE
                     SSPNSYSPLYEPIDGLKENGQYLRSEIAYSKEYPNSFLDITYPDQNFEADRPTLFYFH
                     GGGFFGGSKNMGDPLAASQSTYLIDDIVSKGYNVVNVDYALVPDYHFPTPVIQMNQAI
                     AYMKEHAEEYHLNMDNVVLMGSSAGAIMVAQYGSLLANNDYAQLLNIEPSIAKEHVKA
                     LVIDDAPLDYAKFSLSTKLLMGNYVSGTIYLSEEEINAYNPISHVNKEYPTSFLLGSE
                     YRTDMVSLNKALKQAGVENELVDPLAEEGLEKPHGFVANLRNDPVSAKAFERLITFID
                     DRTKE"
     gene            11452..12735
                     /locus_tag="U1335_001069"
     CDS             11452..12735
                     /locus_tag="U1335_001069"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016466710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEM5231558.1"
                     /translation="MSVSFEAKETNRGVLTFTIGQDAIKPELDRVFNKVKKDINLPGF
                     RKGHLPRAVFNQKFGEEALYQDVVNALLPAAYEAAVAEAGLEVVAQPKIDVVSMEKGQ
                     DWTITAEVVTKPEVKLGDYKNLAVSVEATKEVTDEEVDAKIEAARNNLAELVIKEGPA
                     AEGDTVVIDFVGSIDGVEFDGGKGENFSLGLGSGQFIPGFEAQLVGHTAGEEVNVEVT
                     FPEDYQAADLAGKPALFVTKIHEVKAKEVPALDDELAKDIDEEVETLDELKAKYRKEL
                     EASKEVAFDDAVESAALELAVENAEIVELPEEMIHEEVHRAINEFLGGMQQQGISPDM
                     YFQITGTTREDLHKQYEADAEKRTKTNLVVEAVAKAEGFEATEEEINKEIEDLAATYN
                     MEVAQVRSLLSPEMLKHDITVKKAVEVITSTATVK"
BASE COUNT         3883 a         2534 c         2884 g         3455 t
ORIGIN      
        1 agattgtaaa gagcattgat atgaataaga ttgtaaggaa tgttatgtgg tccagtttga
       61 aaagaggtcg ttttatcaga ccgatttctt ggtagaatca catcactacc atcaacagct
      121 aggataggga gattatcaga gattggaatt ttagaagtaa tatccctaaa aagtgtttta
      181 aaagcttggt gtttaatctg atatcgtcgt tggacaaagg cagattgaga gacaggtaaa
      241 tctaaatcaa gtagctcttt ggctaaggta ttgcctccca tggtcagtat agcttgaatc
      301 atggttttca tagttagctg actttgccga ctaaaatctt tttcaggatg aagcacaaac
      361 tgattggcac tagaaacgat gttgttaata ctatcaagta aatgagcttt aatctgatct
      421 agcatgactt ttcccctttt atttttagtg taccatagaa aaaactaacc taccacaaaa
      481 cgtgataggt tagttaactt aatgacattg ggctttttgc ccagcctctt tatcttttga
      541 gccaaatcct tgccaagaag tctggcttat ggtatactta ttcttgtagt tgatacaaga
      601 acagaaagga gacctaatgg atacaaagtt ttcagtagcc cttcatatac tgaccatgat
      661 cagtgagagc aaggaaatac ttagctcgca agccttggct gagagtgttg gcaccaatgc
      721 cagttacatc cgcaaggtga ttgcactttt gaaaaatgca agcttaatca cttcgcacca
      781 aggccgttca ggctaccaat tgagcaagtc ccctaaggat attagcttat tagaaatcta
      841 ccttgcgacg caagaagtgg agcatattcg cctatttcaa atacaccaga atgccaatct
      901 tacttgtcca gttgggcagc atatagaagg tgcaatggtt cccatctttt ccagcgttga
      961 acaagaactg gaaaatcaac tcagtcgtca atccttagat aatgtgatta ctaatctcta
     1021 tcaatccgca caagtaaccc gaatctgacc tcggtcagat tttataaagt caaacataga
     1081 cctgtaagtg atacaggaac aaatcaaaga atagaaaaga gaaaaacatg aaagcagcac
     1141 aacacacatc ttataacaaa aacaacatcg cccttaacct tacagaaatt gttaagccac
     1201 aaatcaagcc taaccaagtc cttgtcaaag tgaccgcagc aggcgttaat ccattggaca
     1261 acatgatttt acgcggagat gtgaaattga ttgtccctta caaattgccc caaacagctg
     1321 gaaatgaagt ggttggcttg gttgaagaag taggttcaag cgtgacgaca tttgcagcag
     1381 gtgatcgtgt cttcggtcgt cttccgcttg atagtatcgg tgcttttgct gagtatgtag
     1441 cggttgacgc tcaggctctt gctaaggttc ctgcttactt gacagatgaa gaagcggcag
     1501 cagttcctct gacagccttg accatcatgc aggccctcga cctcatgggt gcagaggcag
     1561 gcaagaccat cttcatctca ggcggaactg gtggtgtcgg aggtatggct attccgattg
     1621 ccaaagccaa gggcttgacc gttatcacaa atggtgatgg ggcaaatgca gagcgggtgt
     1681 tgtcattggg tgcagatcgg tttatcgatt acaagacaga agattacacc aaaacactta
     1741 gcaatattga ctatgtcttg gacacacttg gtggtgcaga aacagaaaaa caaatgtcaa
     1801 tcatgaaaaa aggtggacag ctggtttccc ttcgtgccat gccaaatggt gaatttgcca
     1861 aacgtatgaa tttgccaaaa tggaaacaaa tcttgtttgg cctagctggt cgttcatttg
     1921 acaaaatggc taagaaatac ggtgttcact accatttcat tttcgtagag agcaatggtc
     1981 gccaactgca agaagtagca gatattttca gcaagctcga aatcaaaccg tcaatcgata
     2041 ccgtttatcc atttgaagaa gtcaacgcag cacttgataa ggttgccaac ggtcgttcac
     2101 gcggaaaaac cgtcctcagt ttcaactaaa acaatagaat atacaaggaa acatcatgtc
     2161 atatattaca accaaaaacc aatacatcac cgtttcaaac aataaaatcg cctatcgtga
     2221 gcttagcaag ggcaagtctg acattccttt gatcatgctg gttcacctag cggccacctt
     2281 ggataactgg gatcccaaat tgctggattt gctggctgaa cagcaccatg tgattgttct
     2341 agaccttcct ggcgtgggag ctagtcaagg caaggtggct ccgactattc caggaatggc
     2401 tgagcaggct gtttctatta tcaaggcttt gggtcatgag aaaatcaatt tgctaggtct
     2461 gtctatgggt ggtttcattg ctcaagaaat cgttcgtctg gatagtcaat tggtaaaccg
     2521 cttgatttta gcaggtacag gtcctcgtgg tggttttgaa gtcgataagg taactggaaa
     2581 aaccttccgc tatatgctga aggctggttt ggagcgtgtg gatccaaaac gctacatctt
     2641 ctacaatcat gatgaagcag gtcgtttgga ggcagaaaaa gtcttgggtc gtatggggca
     2701 aagaagtgct gctcatgcag acaaggacat gaatgttcca gggtttttga cccagctcaa
     2761 agctatcaaa cgctggggaa gagagccaca agatgatatg acctttatca cccaaccaac
     2821 tctgatcgtc aacggtgata aggatatgca ggttccaaca gaaaattctt acaccatgca
     2881 tgagaaaatc aaaaatagcc aactgatcat ctatccaaat gcaggtcacg gctctatctt
     2941 ccaaaatgca gaagagtttt caaaagcctt actagccttt ttggaggaaa gcaatgccta
     3001 aaaccatttt aatcacagga tcgacagatg gaatcggcaa acacctagcc atgaaactag
     3061 ctagtgaagg ccatgaagtg atcttgcacg ggcgaaatag cgaaaagctc cgtgtagccc
     3121 tcagtgatat tcaactaaaa acaggaaata aaaaaattca cggctacctt gcagactttt
     3181 ccaagttagc agatgtctat cgtttcggcc aagaaattaa acgcgatttt gagcagattg
     3241 atgtcttggt aaacaatgcg ggtgcttact ttggagatgc ccgtgtggca acggcagaaa
     3301 atatcgagat gacctttatg ctgtctgtcc aagttccgta tatcttgacg acggagttgc
     3361 tgcccttgct ggaaaaagca agaggcaggg tcattcacac ctcttctttt atgcaccatt
     3421 ttgcacaaac cagaggcttg gattttggtt tagagcagag ctattctgca gccatggctt
     3481 acaataatgc caaactatac accatttggc tggccattgc tcaggcagag gccttagaaa
     3541 agcaagggtc atctgtgacc gtcaatgcct accatcctgg cttgattgcg acaaatttgg
     3601 gcaatgatgg ggtcaaacgc aacctgagaa gtcggattct caccagtctg atgaaaccat
     3661 tttccaaaga tttggaccaa gggattgaaa caggttacta cttgagtctg tcaccagagg
     3721 tggctggagt atcaggtcgt tatttttcag agaaaaaagt ggcacgggtc agcttgaaag
     3781 gatttgatgt ggcaaagagc caagccttac tagcctatct tgataagaaa attcaagtat
     3841 ttaaggagag cgacagtgac taagattttg ttagaaaaac tccaactgcc caatggtcag
     3901 gtcttagata atcgcttttt caaatccgcc atgagcgaaa ccttggcaga tagtcaggga
     3961 gctccctcag atgacctgat tgccttatat gatttttggg ccaagcaggg aatgggtgtc
     4021 ctagtgacag gcaatgtcat ggtggacggc cgctaccttg gtgagccggg caatgtggtc
     4081 cttgattctg acgatcatct ggctcaattt cggaaatggg cagccattgg gaaaaagaac
     4141 ggtgtgccta tctggctcca gctcaatcac cctggcaaac agatgtatcg gtcaatcaat
     4201 caaactccga ttgcacccag tgccattccg atttctggag actcagcttc ggcctttcgt
     4261 ccaccgagag aaatgaccgt gtttgatatc aaagaagcta gagataaatt tattgcagca
     4321 ggccttcggg caaaagcagc agggtttaca ggtgtacagt tacatgctgc acatggttac
     4381 ttgatcaatc aattcctctc accagcagat aatcagcgga cggaccgcta tggtggcagt
     4441 ctggacaatc gcatgcgatt tttggtggaa atctatcaag gtctgcgtga aaaagtggga
     4501 ccagatttta ccatcgcctt gaaattgaat gcttctgatt ttaaggaaga ggggtttggt
     4561 tttgaagatt gtaaacatgt ggtgaaaacc atgtctgact tgggtatcga cctgattgaa
     4621 atttcaggtg gcaattatga gacacctgtc tttggcagtg aatatgagaa tggtgctgga
     4681 tttgtcacct acgcccttgc cttagcagat ttgacttctg ttcctattgt ttcaacaggc
     4741 ggtttccgaa aagtcactca gatggaagag gctatcaagg atggtgtgtc catgattggt
     4801 cttgccagac cctttgtcct tcatccaagt cttgtcaatg attaccgtca agacggtgat
     4861 gtgcaactga caacgcctcg cctgacaaca ggtcttccaa aactggataa ggcccttggt
     4921 cctattatcg gtgtcagtta ttacgaggcc cagatgaaag gcttggccaa ggggaaatct
     4981 gtcaccatca gtcaacatgc ctggccttat cttcttcaga ccgtcaaggc acacggcctg
     5041 tcagccttga aaccgaggag gaagtagcat aaactagaaa agatttgaga gtccatctca
     5101 gatctttttt cgataaattg agaagaggaa aataaatccg acacttttgt taaaaattgt
     5161 cgttctctaa cagtcattat ttgggtaaac taaatacatc aaatgaaagg aggtttgctt
     5221 gatgtcattt ttagaagcaa acgaaaaaat cgcagagaaa gttgttggtg cccataaggc
     5281 aatagaaaaa acggttgtgg gaggctataa ggcaacagaa aatgcagcag tttcaggttt
     5341 caatacaatc tcagataaat ttatcggagc attttttaca aaggataatg aaacagtaga
     5401 ggaagcaaag gcccgcatgt ctaaaatgga ctttaatcaa cctaactcat ctaagggtga
     5461 tgataagtaa gcaagagtag attttcttgc taaccatact aaataataag aagaaacgga
     5521 atattatgaa aaaaagagat tttatcagtt tgattgctta tacggtgagt ttattggtct
     5581 tagctttagg gatgtgcttt tataccttgc cagaatggga aatgactacc ctagggatgc
     5641 ccttatcggt agccggtctg ctattacttg cactatcttg ggttctgcag aggaagttag
     5701 caggtaaagg ggctcctaag tttgattgga aacagattgt taaagttatc tactgtgttt
     5761 ttgccttgtt ggtttttggt ggaggcttcg cccttgtgac aaccgggaat tttgtactgg
     5821 gtctagtcct aggccttgtt ggccttatat tagtgattgg gatgattcct gtaactgttg
     5881 gcttaaaaaa ttaaagaaaa cctgagtgct gcctcaggtt cttattgctt tctaaagata
     5941 cagatttgga taatgtcagc catctcgtca atcgattcag cacagccatt tctcacccac
     6001 ttggatacga cttgtgttat gcctgccaga aagaagctag atacataggc aatttgtact
     6061 ggattttgga tcccttgagc atggaagcga ggagtaaaaa tcgttgctag caagtgttca
     6121 aagtgttcct tgtggtgaaa atctaattcg tgatgaagat aaatctgata gattttctgg
     6181 tggtctttta caaattgtag gtagggaatg aggtaggcat cgcctgttaa atcagcttcg
     6241 atgtttatgt tgctcaggtt atgagatggg aatttagtta aaaaaagctg agtaaggaat
     6301 tgattggcat cttctaacaa gtcaaattga ttgtcataat aatggtaaaa agtagagcga
     6361 tgtaccttgg cttgcttaca aattttgcta acagaaatgc gttcaaaatc ttccttgtct
     6421 aagagaaaaa tcaatgcttg ctgcagtttt gttttggctg attcagtcat agtgtccgct
     6481 tccttggttt cattacttac tagtttacct caacatccag tttgaaacaa gtcgctttta
     6541 ctacttcgtt tcatttatga caattgatac aactgacaag tttctccaaa tccctaactt
     6601 cttcttggat gaatttaact gactagcaca cggcctgtca gccttgaaac cgaggaagaa
     6661 gtagaataga ctagaaaaga tttgagagtt catctcggat cttttttctg aagtaaatga
     6721 acctaccaac aattttcgga aaaagttgta acaaaaccct tgacaacttt tgggagttag
     6781 gatatactag tctacgtaaa gttgtaataa agaaatttac aacaaaaaca tttcggagga
     6841 aaagaaaatg aaaatagcag tagtagcagc gaacggtaaa gcaggtagct tgattgtaaa
     6901 agaagcggca gcacgtggtt ttgaagtaac ggctatcgtt cgtagtgaaa ataagacagt
     6961 cgcacagcag gttcttcaaa aggatgtttt tgacctgaca gccgatgatg tgattggttt
     7021 tgatgcggta gtggatgcag taggtgcctg gacagcagac actgtacatg tggttcctga
     7081 tgcagccaaa catttggcgg ctatcctaaa agattcacaa acacgtttgc ttgtggtggg
     7141 tggagcagca agcctgtatg ttaatccaga gcgtaccttg actgtggcag atgtgacaga
     7201 gtttccatcg gaagtattgc ctgtgctaaa tgctcacaag gaagcacttg aggcccttcg
     7261 tcaagtagat gatgtcaact ggacctatgt aagcccggca ggtgatttcc aagcagacgg
     7321 cgaacggaca ggtcgctata ttcttggcgg tgaagagttg gtcttgaata gcaagggaga
     7381 aagtgtgatt tcctatgcag attacgccat tggtatgatt gacgagattg catcaggtga
     7441 tcatctcaaa gcacgtatca gccttgtcag tgagtaaaag agtgttatgc agatttcaaa
     7501 taaatttacc attgccattc acgccttggc ctttatccat ctctttcaag accagcaacg
     7561 tgtcaccagc aaggttttgg caaacagcat tcaagccaat cctgttatca ttcgctcggt
     7621 tctatctggt ttgaaggatg cgggaattgt agacgctaag cagggtagcg gcggttttcg
     7681 tttagcaaag ccacttgatg acattagcct ttatgacatc tttgttacgg ttgacaatat
     7741 cgataagaaa ggcttgttta attttcatga aaatccccat cccgactgta tcgtgggggg
     7801 gaatatccat gctgctgtgg acgacaaatt agtccaagtc cagacagcta tggagaaaga
     7861 attgaaaacc atgtatatgt ctgatgttct ggttgaccta gaaaaagcca ttgaagaaaa
     7921 agtgaaaagg acttaagtgg gagtgggaaa gaactcgacc attcatagaa gagttcgtca
     7981 acaagtcttt atttcaagtt gttgagctga aacagtctat ccccagacat caatttatgt
     8041 gagctgactg ccgtcagctt atatctccca ctttaaaagg tctcccagac cttttaaact
     8101 cccacccccg catagctcca aaggtttggg gaacctttgg aggtcggaga tagagcgaac
     8161 agagttcgct acaaaacagt cagagtagtg actgttggag gttggaaatg aagcgaactc
     8221 tgttcgcatc agtcgtaatg gtcagatttg gagtgtaaaa cacgaacaaa tctgccaatc
     8281 aaccactgcg ctgagatgtt gatacgaact ctgagtagtg gtcctgggct tcttgcccat
     8341 cctcactata cacaaaaaga cttagagtga ctgaaaaaca gttgtctaag tctttttgct
     8401 tggtctggtc aagattgttg ataagcttgc tctattgctt acccatcaac cgcatgatgt
     8461 catcagggct ttcctgacag cctctagcaa cccaggtttt aagcactcgg aaaaatccac
     8521 ctacgataaa ttgcaggtga aaatcatcag tcaagtcccc cagcctttct ttgaaatagc
     8581 tatccaagac ctcctcgagc aagtagtcca aatggttggc agtcaataag cgaatcttat
     8641 cctgttgctc ataccaaaag tcaaaaaatt gccgtaaagc tagtaagaga tgagcatctg
     8701 accaatccga caagtcaatc tgccgtttgg tcaaccaggc ttgcaattcc aagttgaagg
     8761 accgttcgag cacctcttcc ttattagaaa agttcctata aaaagtcacc cgaccgacgc
     8821 cggctcgctc caccaactct gacacactaa tcttttcaaa agatttgtct tccagcaact
     8881 cccacaaagc ctccacgaca ctccccacaa ataacgactc tttccgcttc actctttcca
     8941 tgcgaaacac ttcctttcat ttgtttcctt ttgggcaaat agcagagctg ggactggttt
     9001 tcccactgct catctgctat actaataaaa aacgaaacac ttgtttctaa aaatatacca
     9061 taaaggacag aaaaaagaaa gtatgaaaaa agtttggaaa atagtagcag ctgtaacagt
     9121 tgttctagcc ttgcttggtt ttattgccta caaaaagaca tttggctggt cagctcctga
     9181 gcttgtacat cagaccccgc aagtgaatga atggtacagc ctcagtcccg atggggttgt
     9241 agattctcag ggcaatcagg cacacggcct gcttcgtatc ggtaaagaga agaataaggt
     9301 gatggtctat ttcttcggtg gtggtgtgag tatcaatgaa gagactgcta gtggtggcac
     9361 acgctatttt gcgaccacaa ctggccatca agattatgtt gcgacttggg gaattggaag
     9421 tccgcaggaa gacaatccat ttaaggactg gactatgatt gtgcttccgt atgggacagg
     9481 agattttcat gctggcacac agaattttac ttacgtagat gataaaggta aggaacaaac
     9541 gatttatcat cagggttata ataatttgtc aagtatatta gcagcagcca aaccgcacgt
     9601 tggcaatccc gatacgcttc tggtgactgg attttcagct ggcggatttg caacatcatt
     9661 gctagcggat gatgtcattt ctcattttcc aacagcgaaa aatgtcaccg ttgcagtgga
     9721 cagttctttt ttgagacatg ataactggaa aagtattgcg gaaaatgtct ggaaaacgcc
     9781 gacttctatt agtgatcgcc tgcattcaga caatattgtt ttagatagct tagtagccct
     9841 ccatgagaaa cgcggggata gtgttaagat attgtttgat atttcctatc gagatggaat
     9901 tcttcagcaa tatcaggctt atattgacca agggcaacta gcagatgcaa cagaagagag
     9961 cagtgagcac tttcaaaaag aacttaaaaa aatgattcaa gaactgcaat ctaagattga
    10021 tggcgtgggt atttttatct ggaactatgg tcaagatgaa aataccacag ctactcagca
    10081 caccaccatt aacttctcaa cattctttac ccctatgtct caagacaaga gtgtggcaga
    10141 atggctggat gatgcggtta acggagaggt aaaaagttac gggttagaac tattagatta
    10201 ggagaacaac atgaaaaaat tcaaaaaaat catcttatgg atccttggga ttgtagctag
    10261 tctcggtatc attgcttatg tgtctgttac caatcatccg cagttgatgg tcggtgtcat
    10321 tcaatcgttt atgtacaagg agagttcacc taactcttac agtccccttt atgaacctat
    10381 tgacgggttg aaagagaatg ggcagtatct gagaagtgag attgcctata gcaaggaata
    10441 tcctaacagc tttttagata ttacctatcc agaccaaaat tttgaagctg accgtccaac
    10501 cctcttctat ttccacggtg gtggattctt tggaggcagc aaaaatatgg gggaccctct
    10561 ggctgctagc caatcgacct atctcattga cgatatcgtt tcaaaaggtt acaacgttgt
    10621 taatgttgac tacgctttgg tgcccgatta ccattttcca acgcctgtga ttcagatgaa
    10681 tcaggctatc gcctacatga aggaacatgc tgaagaatac catttgaaca tggataatgt
    10741 tgtcttgatg ggttcatcag caggtgccat catggtagca caatacggta gcctcttagc
    10801 aaataatgat tacgctcagc tattgaacat tgaaccaagt attgcaaaag aacatgtcaa
    10861 ggccctggtt atcgacgacg ctcccttaga ctacgccaag tttagcttaa gcacaaagct
    10921 cttgatggga aattatgttt caggaaccat ctatctaagt gaggaagaaa tcaatgccta
    10981 taacccgatt tcccatgtga acaaggaata cccaactagt ttccttctgg gaagcgagta
    11041 tcggacagat atggtgtcgc tcaataaagc cttgaagcaa gcgggagttg aaaatgaatt
    11101 ggtcgatcct ttagcagaag aagggcttga aaagccacat ggttttgtgg cgaatttacg
    11161 aaatgacccg gtgtctgcca aagcatttga gcggttgatt acttttatag acgatagaac
    11221 caaggaatag tcggagtatt gataagttgg aaactgatgg ggatttgccc aatcaatctg
    11281 ccactctgaa aaccaagttt gtactcagaa agtctacacc gaaaaattcc aagtgagaac
    11341 aataagtccc agctctgcca tttcccaaaa gtccgttata aaatcgttga aatccttgtc
    11401 aattgtgtta taatgaagag tatgcaataa aattttaagg agaatgacag aatgtctgta
    11461 tcatttgaag caaaagaaac aaaccgcggc gttttgactt tcacaatcgg tcaagatgcc
    11521 atcaaaccag aattggaccg cgttttcaac aaagttaaga aagatatcaa tcttccaggt
    11581 ttccgtaaag gtcacttgcc acgtgccgtt ttcaaccaaa aatttggtga agaagcactt
    11641 tatcaagatg ttgtaaatgc attgttacca gcagcttatg aagcagcggt tgcagaagct
    11701 ggtcttgaag tagttgcaca accaaaaatt gacgttgtgt ctatggaaaa aggtcaagac
    11761 tggacaatca ctgcggaagt tgtgacaaaa cctgaagtaa aattgggtga ctacaaaaac
    11821 ttggcagttt cagtagaagc tactaaagaa gtaacagatg aggaagttga tgcaaaaatc
    11881 gaagctgcac gcaacaactt ggctgaattg gttatcaaag aaggtccagc agctgaaggc
    11941 gatacagttg ttatcgactt tgtaggttca atcgacggtg ttgaatttga cggcggtaaa
    12001 ggcgaaaact tctcacttgg acttggttca ggtcaattca tcccaggttt cgaagcacaa
    12061 ttggtaggtc acacagctgg tgaagaagta aatgttgaag tgactttccc agaagactac
    12121 caagcagctg accttgctgg taaaccagcc ctcttcgtga caaaaatcca tgaagtaaaa
    12181 gcaaaagaag taccagcttt ggatgacgaa ttggcaaaag acatcgacga agaagtagaa
    12241 acacttgatg agttgaaagc taagtaccgc aaagaattgg aagcatcaaa agaagttgcc
    12301 tttgacgatg cagttgaatc agcagctctt gaattggctg tagaaaacgc tgaaatcgtt
    12361 gaattgccag aagaaatgat tcacgaagaa gttcaccgtg caatcaatga attcttgggt
    12421 ggtatgcaac aacaaggtat ctcaccagat atgtacttcc aaatcactgg tacaactcgt
    12481 gaagaccttc ataaacaata cgaagcagat gctgaaaaac gtactaagac aaacttggtt
    12541 gttgaagcag tagcgaaagc agaaggattc gaagcaactg aagaagaaat caacaaagaa
    12601 atcgaagact tggcagcaac ttacaacatg gaagtcgcac aagtacgtag cttgctttca
    12661 ccagaaatgc ttaaacacga catcacagtg aaaaaagcgg ttgaagtcat cacaagcact
    12721 gcaactgtaa aataatgcaa attggaaact cgactt
//
LOCUS       DASGAC010000050        12455 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.050, whole genome shotgun sequence.
ACCESSION   DASGAC010000050 DASGAC010000000
VERSION     DASGAC010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 12455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12455
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.050"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            159..644
                     /locus_tag="U1335_001070"
     CDS             159..644
                     /locus_tag="U1335_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002264356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5231559.1"
                     /translation="MLKAKVKTLYYELLGKSLKQQLIEQGIPQNEVSYYSNDEVRLIS
                     APAISQILKGKRNTTVDTVDALQETLGLSNVKSVFFPNLEFCESLIRHFTKLILTDRF
                     SSTKQLFQEKERDIQQNLSTLATALYNFFPNFPEEETSYQIADSLAEWLIEFVTLVAQ
                     L"
     gene            791..1111
                     /locus_tag="U1335_001071"
     CDS             791..1111
                     /locus_tag="U1335_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003032314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231560.1"
                     /translation="MAIKIKHKKGGYSTTTALEYVNPSKPIHSLSISLEPQQLFEDGK
                     PTGEIIAYKATFVQEGLEPFQVKFENKVKLPEFLSLVQFDNLQAVEVRYNVYFKADGL
                     KEVK"
     gene            1111..2196
                     /locus_tag="U1335_001072"
     CDS             1111..2196
                     /locus_tag="U1335_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM5231561.1"
                     /translation="MATKEESALQSYLLQSLNMALGALMQGETSYTNSFNITIEENGF
                     IFVPRLPCAYILDDELYNKIFLIANASLYPRYTLLKQNATHFISLQTEDIHVQRGLFF
                     PWKVGISKRLVIPDLDKYTSNLPKNQIPIMENFSLNLDKVNHLAICGNSGSGKSYALT
                     YLLSVLKHQSDLILVDPKFDTPSRWAREHQIAVIHPVENRSKSDFVSEINEKLSHCLK
                     IIQQRQAILYDNPRHKFTHLTIVIDEVLALSEGVNKTIKESFFSLLSQIALLGRATKI
                     HLLLVSQRFDHTTIPVSVREQLNVLIQIGNINKKTTQFLFPDLDPEGIVIPIGHGTGL
                     IQVIDNEHPHQVLPLLCPTYYTKKGIL"
     gene            2198..2806
                     /locus_tag="U1335_001073"
     CDS             2198..2806
                     /locus_tag="U1335_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002306596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231562.1"
                     /translation="MKKSFFIRTFNLNTNLFILASLTGLLGWTLNFLAITLNQTLPVT
                     LDLSQVSLYLGLGSHYCYLAMSILLFVLAVLVTVEIVNRVRYDSLSNYFKSIFHTFKF
                     RNFLTQWEKSEKVTTIDNQTITTYNPINGSFNRCAHKSVIDIRKDEIKGFIKVPRDQQ
                     GQKVLVDMLSQLKEEVSSQHPNYYFSAPNRIRNNLWLVGKRR"
     gene            2939..3565
                     /locus_tag="U1335_001074"
     CDS             2939..3565
                     /locus_tag="U1335_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HEM5231563.1"
                     /translation="MAKEQRSSKWTFLFYKESCPTDYLEVLEELHIPFILSPWHDKDV
                     NRQTGALKKAHKHGAFFFDSLKSYKQVSELIKDKLNGPAHVEVVQSPKGLFDYFTHAE
                     NKDKTPYDVNDIEVGCGFNLDKFLIETNSDEFMHEVVDIIELNDFTEFEELVWYARAN
                     HTLLLGLIIERTYFFAKYLDSRRCNPQRNQTKKGSQTDDSKHSTTSTD"
     gene            3810..4859
                     /locus_tag="U1335_001075"
     CDS             3810..4859
                     /locus_tag="U1335_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004269878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5231564.1"
                     /translation="MATITKRGKSFRATVSLYKKGEYKRETKTFSNKKDAELWTLEME
                     LEKGRGKNIAERSTLFTDFYRNWVETVKKNDVREATFINYKRTLVVVESLFDGIQLKH
                     LDDIIMQKKIDKYSESHSKKTVKELVLKIRGSLKYAYARGLITNDFGHLLKSKGKELP
                     KRNIPLSVTEFKKLRQYCLNHAEEDEFNVLVALALETGARRGELLGLKKEDIFEYGIK
                     VRRSISPTNDDTQLKTKHSKRDISINKDIYQILVNLANTKTDYVFDWNGFRQAGQLQR
                     LLKQLDLTKTTFHGLRDTHASFLFSKDISLDYISRRLGHNSILTTQQYYLELMPEKKH
                     QQDADALSLLNDLSL"
     gene            complement(4916..5308)
                     /gene="rpsI"
                     /locus_tag="U1335_001076"
     CDS             complement(4916..5308)
                     /gene="rpsI"
                     /locus_tag="U1335_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEM5231565.1"
                     /translation="MAQAQYTGTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADL
                     RLVINQPFAVTSTQGSYDVFVNVNGGGYGGQSGAIRHGIARALLQVDPDFRDSLKRAG
                     LLTRDARMVERKKPGLKKARKASQFSKR"
     gene            complement(5328..5774)
                     /gene="rplM"
                     /locus_tag="U1335_001077"
     CDS             complement(5328..5774)
                     /gene="rplM"
                     /locus_tag="U1335_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003083327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEM5231566.1"
                     /translation="MNKTTFMAKPGQVERKWYVVDATDVPLGRLSAVVASVLRGKNKP
                     TFTPHTDTGDFVIVINAEKVKLTGKKATDKIYYTHSNHPGGLKSISAGELRSKNAVRL
                     IEKSVKGMLPHNTLGRAQGMKLKVFVGAEHTHAAQQPEVLDISGLI"
     gene            complement(6001..6894)
                     /locus_tag="U1335_001078"
     CDS             complement(6001..6894)
                     /locus_tag="U1335_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="haloacid dehalogenase-like hydrolase"
                     /protein_id="HEM5231567.1"
                     /translation="MKRLLSCYASDMVGATKEELKQSILSSEGRILMGETVVTAAPLI
                     AGVTNAEMMAAFGCDLLVLNELDVLHPEIVDFYDCDNPIAEIKRLTGRLVGINLEPVD
                     TSQEVQDQQVFLKPGRQVSPESLGQAQVLGVDFIMLTGNPATGVSMAAIRSAIGLAKE
                     YFDGLIFAGKMHGAGLGESVVDSQALLDFVDLGADGVLIPAVGTVPGVREEIVAPIVS
                     QVKARGGLVISTIGTSQESADSQTVREFGLSNKRVGSDIHHIGDGGYGRMPDPENILA
                     LSLAVRGKRHTYFKMGQSVRR"
     gene            complement(6964..7824)
                     /locus_tag="U1335_001079"
     CDS             complement(6964..7824)
                     /locus_tag="U1335_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002949140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM5231568.1"
                     /translation="MTFTIVTDSTSDLPVSWVQENDVTVLGLTINLDGVTYETVGENR
                     LTSAVLLDKMATGGLPTTSQVNVGQFEEVFEAAAKEGKEVLYLAFSATLSGTYQSAVI
                     ARDMVMDQYPEAVITIVDTKAATIGEGYLVMKAVEARAAGKTLAETKAIVEDLVPRLR
                     TYLLVDDLNHLVRGGRLSKSAALIGGLVNIKPLLALNAEGKLEAIAKIRGRKKGIKEM
                     LNLTLDNLDHSTVMVAYTGDIEAAEAIKATLLEDSRVTDVLLTELGPIIATHTGTGVL
                     AILSINKKER"
     gene            complement(7821..8342)
                     /locus_tag="U1335_001080"
     CDS             complement(7821..8342)
                     /locus_tag="U1335_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEM5231569.1"
                     /translation="MKEKVLIVDGYNMIAFWQATKQDFKKGDLDAARTTLLRTLSHYA
                     AFEQIEVICVFDAHHVPGLRQQYDEFKVSVIFTEEEETADSYIERLSAQLNSDRRKQV
                     FVATSDLNEQWVVFSQGALRVSARELEERARVIKKDLDKFVDQVELYTPRLNPWSDGN
                     FQALKEMMEEMKE"
     gene            complement(8343..9071)
                     /gene="rlmB"
                     /locus_tag="U1335_001081"
     CDS             complement(8343..9071)
                     /gene="rlmB"
                     /locus_tag="U1335_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEM5231570.1"
                     /translation="MEHNDIVYGVHAVVESLEANTGNKLYIQDDLRGKNVEKIKALAA
                     EKKVSISWTPKKTLSDMTEGAVHQGFVLRVSEFAYADLSVILEKAEQEDNPLILILDG
                     LTDPHNFGSILRTADATQVAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIARVTNLSQT
                     LDKLKEAGFWVFGTDMNGTPSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMITIPMK
                     GHVQSLNASVAAAVLMYEVFRKKI"
     gene            complement(9127..10332)
                     /locus_tag="U1335_001082"
     CDS             complement(9127..10332)
                     /locus_tag="U1335_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HEM5231571.1"
                     /translation="MNSFEKQQRHNEKIRSMNAQARAMSAQAIALQKQNNILQKEHER
                     QIEKEFKDRIFQLRLHLAQVTDESQRFVIQQMLSEAEEDYENYQREQAEKRLADAKRR
                     KIWLIISSIVAVLGMAGLYFVYQDISQVTVPELYGIELSEAKDLLYEEGLKVGTITEV
                     GGQSVQPGMVSVSSPSSGKKVKRGSAVNLIIAKNVDAKDTTVVGDSSTSEVVTSKTAG
                     SSQASSQSQVGSAVQLFTVDIKKQGLVIRQEPSLSGEVVTNIEPGTYTIVETTQKEGH
                     SWGRLKSGQGWISLTDLHNPVPQVDTKNLTTDQVKAWVMDDLFSRSVMIEKYRKDQVV
                     ISVRMAEDGLVYADVTVPSDPNFEPRDWSYRINSRGELEASEYDTDPEQGGVNWYVAQ
                     HYYLENSVN"
     gene            10591..10980
                     /locus_tag="U1335_001083"
     CDS             10591..10980
                     /locus_tag="U1335_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1761 domain-containing protein"
                     /protein_id="HEM5231572.1"
                     /translation="MTLIFGIVAGLIAFAIGGLWYGLIFRDAWIKASGIDMAKVEANR
                     QAGKNGQKEMVISLVIEVLTAVVAIFFIKTLDVSPLHAAGGMGVIAVLASLKNYVFEQ
                     RPINLILINESYKLVCYLVVGILALFA"
     gene            11050..12018
                     /locus_tag="U1335_001084"
     CDS             11050..12018
                     /locus_tag="U1335_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HEM5231573.1"
                     /translation="MSLSLRTIKLIFATVLAIYLATALGLSYATAAGIIAILSVLDTR
                     KSSFKMARNRLFSTLLALTIAVLTFALFGFGIWTLGIYLALYVPLAYRFNWEAGIAPS
                     TVLVTHLLLEQDISLIFLGNELALFLIGAGLALLFNLYMPSQEKKIQAYHDQVEDLLK
                     QILLRFEAFLLNGDGRNEAELITQLDQTLEQALKIVYLDRHNQLFQQTNYQVHYFEMR
                     AAQNKILRTMAGNINKCLLEGRENVILSSLFERTAQQLSRENSAKELLMDIELFHATF
                     RERPLPQTREEFETRATLFQLLHDMEAFIRLKVDFYEVYKDEEPSV"
     gene            complement(12015..12233)
                     /locus_tag="U1335_001085"
     CDS             complement(12015..12233)
                     /locus_tag="U1335_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231574.1"
                     /translation="MKALLKKIRITALYILLYNLILILSIWLGKVSSKEEFMIAVAGN
                     AVMMGLSFVHLHNQVSDEFHGKVEEPSA"
BASE COUNT         3536 a         2964 c         2389 g         3566 t
ORIGIN      
        1 agcgaaggac ggatggaaac aatatgaaaa ttagtcacta acaggctgat tctatctatt
       61 actgtttcac cgtttctttg ttgcgctttt ttgcatccac tcggtaactg taatcgctca
      121 tttgtttctt tccgtctgag ggctggaaag gacggcttat gctaaaagcc aaagttaaaa
      181 ctctctatta tgaattacta ggaaaatctc tcaagcaaca attgattgag caaggaatcc
      241 ctcaaaacga agtatcttac tattcgaacg atgaggttcg attgatttca gctcctgcta
      301 tcagtcagat tctaaaaggc aaacgcaaca ccaccgtgga tactgtggat gccctacaag
      361 aaacactagg actatcaaat gttaaaagcg tcttctttcc caatcttgaa ttttgtgagt
      421 cactcattag acattttaca aagctaattc tcactgatag attcagttcc acaaaacaac
      481 tctttcaaga aaaagagagg gacatccaac aaaatctttc aaccttggca actgccttat
      541 acaatttctt tcctaatttt cccgaagaag aaacttcgta ccaaatcgct gatagcttag
      601 ctgaatggtt aatcgaattt gtaacacttg tagcacaact ttaagcgcaa cactttccag
      661 attattgaaa tcgaggaaag gctaaatact atatcataga gatgtcctta gctaagacag
      721 tccagctcac gactcaaacc gagcatgttg ccctaataaa atattcaagc tatcaaggag
      781 gataaaacct atggcaatta aaattaaaca caagaaaggt ggctactcta ccacaactgc
      841 actggaatat gtaaaccctt caaaaccgat tcatagtctg agcatttccc tagaacccca
      901 acaactcttt gaagatggaa aaccaactgg tgagattatc gcctacaagg caacctttgt
      961 ccaagaaggg cttgaaccct tccaagtcaa gtttgaaaat aaggtcaaac tgcctgaatt
     1021 tctcagctta gtccaatttg acaatctcca agccgttgag gttcgctaca atgtctattt
     1081 caaggccgac gggcttaagg aggttaaata atggcaacta aagaagaatc cgccttgcaa
     1141 tcctacttgc tacagagtct gaacatggct cttggggctc tgatgcaagg agaaacgagc
     1201 tataccaaca gttttaacat cactatagaa gaaaacggtt ttatttttgt gcctagactg
     1261 ccttgcgctt atatccttga cgatgagctc tataacaaaa tcttcttgat tgctaatgca
     1321 tccttgtatc cccgctatac gcttttgaag cagaacgcaa ctcactttat atccctccag
     1381 acagaagata tacatgttca acgtggacta ttctttccgt ggaaggtggg aatctcaaaa
     1441 cgcttggtca tccctgacct tgataagtat acgtccaatc ttccaaaaaa tcaaattcca
     1501 attatggaaa atttttctct caatcttgat aaggttaatc acttagctat ctgtgggaac
     1561 tcaggttcag ggaaaagcta cgctctgacc tacctactca gcgttcttaa acatcaatct
     1621 gatttgatac tagtcgaccc taagtttgac acccctagcc gatgggcacg tgaacatcaa
     1681 atcgctgtga ttcaccccgt tgaaaaccga tctaagtctg actttgtatc tgaaatcaac
     1741 gagaaattat cccattgctt gaagattatt caacaaaggc aggcaattct ttatgacaat
     1801 ccccgtcata aatttactca cttgactatc gtcattgatg aggttctagc tctttcagaa
     1861 ggagttaata agaccattaa ggagtctttc ttctccctct tgtcacaaat cgccctgctc
     1921 ggacgagcaa ccaaaattca tttgttactc gtttcacaaa gatttgacca tacaacgatt
     1981 ccggtttccg ttcgtgagca actcaatgtt ctcatccaga ttggcaatat caacaaaaaa
     2041 acaacccaat tcttgtttcc tgaccttgac cccgaaggca tcgttattcc cattggacac
     2101 ggcactggct taatacaggt aattgacaat gaacatcccc atcaagtcct tccattgctc
     2161 tgtcctacat actacactaa gaagggtatt ttgtgatatg aaaaaatcat tttttataag
     2221 gacattcaac cttaacacca atttgtttat tctggcaagt ttgactggat tgctgggatg
     2281 gacactgaac tttctagcta tcactctgaa ccagacttta cctgttacac ttgacctatc
     2341 gcaagtaagt ctttacctag gtttaggaag tcattattgt tacttggcta tgtccatctt
     2401 attgttcgta ctagctgttc tggtaacagt cgaaatcgtg aatcgagttc gatatgatag
     2461 tttatccaac tatttcaaat ctatcttcca taccttcaag ttccgtaact tcctgacaca
     2521 atgggagaaa tcagaaaaag tcaccaccat tgacaaccaa accattacga cctacaaccc
     2581 aatcaacggt agtttcaacc gctgtgccca taagagcgtg atagacatcc gaaaagatga
     2641 aatcaaaggc ttcatcaaag tcccaagaga ccaacagggg caaaaagtct tggtagacat
     2701 gctttcacaa ctcaaagaag aagtatctag tcagcatcct aactactact tctccgcacc
     2761 gaatcggatt cgcaacaact tatggttagt tggtaaaaga cggtaaaaga gggagctatg
     2821 gcttgcgtta agcaatagcc gaatagctcc ctcttttcta ttgaacagga taattggggt
     2881 tgactacgac ccccaattat ccaataatca gtaatcaaaa tcagaaaggc atatatacat
     2941 ggcaaaagaa caacgctcaa gcaagtggac attcctcttt tacaaggaga gttgtcctac
     3001 tgactatctt gaagtattag aagaattaca tatccccttt attcttagcc cttggcatga
     3061 taaagatgtc aatagacaaa caggagcgct gaaaaaagct cacaaacacg gcgcattctt
     3121 cttcgattcc ctcaagagct ataaacaagt ctctgagtta atcaaagaca aattgaacgg
     3181 accagcccat gtggaagttg ttcaatcccc taaagggctc tttgactatt tcactcacgc
     3241 tgagaataag gataagaccc catatgatgt gaatgatatt gaggtaggct gtggattcaa
     3301 ccttgataag ttccttatcg aaacaaattc agatgaattt atgcacgaag ttgtagacat
     3361 tattgaactg aacgacttta ccgaatttga agagttagtc tggtatgctc gtgctaatca
     3421 cacactacta ctcggactta tcattgaacg cacctacttt ttcgctaagt atcttgattc
     3481 acggcgttgc aatccacaac gaaatcaaac aaagaaagga agtcaaactg atgattcaaa
     3541 acactcaacc acttctactg actaggcaac aagcctctga ttttcttggc attgacccta
     3601 aatcttttga caagtacatt cgcaaccacc ctgattttca atgttttatg gttggaaaac
     3661 aagagcggta tttaaaatct aaacttataa gatttatcga aaatcactgc gattaacgga
     3721 taacgattga taaaataaga tttttcatat atgctatatg tgactagtct attttatcaa
     3781 tcatttttta taaaagaaag gctgataaaa tggcaactat tacgaaacgt ggaaagtctt
     3841 tccgtgcaac tgtatcactc tacaagaaag gggaatacaa gcgagaaact aaaacgttca
     3901 gcaacaaaaa agatgctgaa ctttggactt tagaaatgga gcttgaaaaa ggacgtggga
     3961 aaaacattgc tgaacgttct acactattta cagattttta ccgtaactgg gtagaaactg
     4021 taaagaaaaa tgatgtccgt gaagcaacct tcatcaatta caagagaact ctcgtagttg
     4081 tggaaagtct ttttgatggg attcagctca aacatcttga tgatattatc atgcagaaaa
     4141 agattgataa atattctgaa tctcactcaa agaagactgt aaaagagcta gttttaaaga
     4201 tacgaggttc attaaaatat gcttatgctc gtggtttaat tacaaatgac tttggtcatc
     4261 tcttaaaatc aaaagggaaa gagctaccaa aacggaatat tcctctatct gttacagaat
     4321 ttaaaaaatt aaggcagtat tgcttaaatc atgcagaaga agatgaattt aatgtattag
     4381 tagctctagc ccttgaaact ggtgctagac gtggcgaact acttggtctc aaaaaagaag
     4441 atatttttga gtacggtatt aaagttaggc gctctattag cccaactaat gacgatacac
     4501 aactaaaaac caaacactct aagcgtgata tttctatcaa taaagacatt tatcaaatcc
     4561 tagtaaatct agctaatact aaaacagatt acgtttttga ttggaatgga tttagacaag
     4621 ctgggcaact tcaacgctta ctgaaacaac ttgacctaac taaaacaaca tttcacggtt
     4681 tacgtgatac ccacgcttct tttctatttt caaaagatat tagtctggat tatatttcaa
     4741 gacgtttggg acacaattca attttgacaa ctcagcaata ctatcttgaa ttaatgccag
     4801 aaaaaaagca ccagcaggat gccgatgctt taagtctctt aaacgactta tcactataat
     4861 taacaccaac tgacaccaaa aagtgcctgc aaacgttggt ataataaggt tttgattaac
     4921 gttttgagaa ttgtgaagct ttacgtgctt tcttaagacc tggtttctta cgttcaacca
     4981 tacgagcgtc acgtgtaaga aggcctgcgc gtttcaatga atcgcggaag tctgggtcaa
     5041 cttgaagcaa tgcacgcgcg ataccgtgac ggatcgcacc tgattgacca ccgtaaccac
     5101 caccgttcac gttaacgaaa acgtcgtatg aaccttgtgt tgaagttact gcgaatggtt
     5161 ggttgataac caaacgaagg tcagcgtgtg ggatgtactc ttctacatct tttttgttta
     5221 ctgtgatttt accagtacct gggaccaaac gtacgcgtgc aaccgcgttt ttacgacgac
     5281 cagtacctgt gtattgtgct tgtgccattt agattacgtc ctttccctta gataagacct
     5341 gaaatatcaa gtacttctgg ttgttgtgca gcgtgagtgt gctcagcacc tacaaacact
     5401 ttcaatttca tgccttgtgc acgaccaagt gtgttgtgtg gaagcatacc tttaactgat
     5461 ttttcaatca aacgaacagc gtttttagaa cgcaattcac cagctgagat tgacttcaat
     5521 ccgcctgggt ggtttgagtg agtgtagtag atcttatcag ttgctttttt accagtcaat
     5581 ttcactttct cagcgttgat aacgataacg aagtcaccag tatcagtgtg aggggtgaaa
     5641 gttggtttgt ttttaccgcg aagaacgcta gcaactactg ctgaaaggcg tccaagaggt
     5701 acatcagtag catctactac ataccattta cgttcaactt ggcctggttt agccataaat
     5761 gttgttttgt tcatgatttc tcctatacga atcgtttttg tttactgggc ggatgttccg
     5821 gtccgcgggt atttggaagg ttccggggcc tttcaaatgg ggtaaacaat accgtctacc
     5881 attctatcaa atctactagt ctccgtcaag ccattttact ttactttttt tattttttct
     5941 tcaacctaaa gcaaggatag aaaaaacgag ctttaatagc agaaaaatga caccaaatcc
     6001 ctatctcctc accgattgcc ccattttgaa ataagtgtgt cgcttgcctc tgaccgccaa
     6061 ggacagggcc aagatatttt cagggtctgg catccgacca taacccccat ctccgatatg
     6121 gtgaatatcc gaacctaccc gtttgttgct gagtccaaac tcccgcaccg tctggctgtc
     6181 cgcactctcc tgactagtcc cgatagtcga aataaccaga ccaccacgcg ccttgacctg
     6241 actgacgatc ggtgccacga tttcctcccg tacacccggc accgtgccga ccgcaggaat
     6301 gaggacaccg tctgccccca agtccacaaa atctagcagg gcttgactat ccacgaccga
     6361 ctctcccaga cctgcaccgt gcattttccc cgcaaagatg aggccatcaa agtattcttt
     6421 ggcaaggcca atagcagagc ggattgcagc catagacaca cccgtagcag gattacctgt
     6481 cagcatgatg aagtccacgc caagaacttg ggcctgtccc agactttctg gactaacctg
     6541 acgacctggt tttaaaaaga cctgctggtc ttggacttcc tgactagtat ccacaggctc
     6601 caagtttatc ccgaccaatc gacctgtcaa ccgcttgatt tcagcgatag gattgtcgca
     6661 gtcgtaaaag tcaacaatct ccggatgaag cacatctaat tcgttgagca ccaaaaggtc
     6721 acaaccaaag gcagccatca tctccgcatt ggtcaccccc gcaatcaagg gggccgccgt
     6781 aaccactgtt tctcccatga gaatccgacc ttcactggac aaaatggact gcttgagctc
     6841 ctccttggtc gctcccacca tatcactggc atagcatgac aataaacgtt tcataagaac
     6901 ctccaaatgg atatgttttg ttatttgtaa ccgttttctt tttgtgtgaa taaagaaaag
     6961 agattatctc tctttcttat tgatggatag gatagctaga acccctgtac ccgtatgagt
     7021 ggcaataatt ggccctaact ctgtcaagag cacatcagta acacggctgt cttccaacaa
     7081 ggttgcctta atcgcttcag ccgcctcaat atcacctgta taggctacca taaccgtaga
     7141 atgatccaaa ttgtccaagg tcaggttcag catttcctta atcccttttt tacgaccacg
     7201 gattttggca atggcttcta acttcccttc cgcattgagc gcaaggaggg gcttgatatt
     7261 gactagaccg ccaatgagag ctgccgattt agacaagcgt ccacctcgca ccaaatgatt
     7321 aaggtcatcg accaagaggt aggtccgtaa gcgcggcacc aaatcttcta cgattgcctt
     7381 ggtttctgcc agagtcttac ctgcagcacg tgcctcaaca gctttcatga ctaagtaacc
     7441 ttctccaatg gtcgccgcct ttgtatcaac gatggtgatg actgcttctg gatattggtc
     7501 cataaccata tctcgtgcaa tgactgcact ctggtaggtc cctgaaagag tagctgagaa
     7561 agcgagataa agcacctctt taccttcctt agctgccgcc tcgaatactt cttcaaactg
     7621 accaacattg acctgactgg ttgtcggcag gcctccagtc gccattttat ccagcagaac
     7681 tgctgaggtc aagcggtttt ccccaacggt ttcataggtc acaccgtcaa ggtttatggt
     7741 caaaccaagc acggttacat cattttcttg gacccagcta accggtaaat ccgatgtcga
     7801 atcggttacg attgtaaatg tcactctttc atttcctcca tcatttcttt taaggcttga
     7861 aaattcccat ctgaccaggg attgagccgt ggggtgtaga gctctacctg gtccacaaac
     7921 ttgtccaagt cctttttgat gaccctggct ctctcctcca actcacgcgc cgaaacccgt
     7981 aaggcccctt gtgaaaagac cacccattgt tcgttgagat cgctggttgc gacgaaaacc
     8041 tgcttgcgac ggtcactatt gagctgggca ctgagtcgtt cgatataact atctgccgtc
     8101 tcttcctcct ctgtaaaaat gaccgatacc ttgaattcgt catattgctg gcgaagacct
     8161 ggcacatggt gggcatcaaa gacacaaatc acctcaatct gttcaaaggc tgcgtagtga
     8221 gacaaggtgc gaagcaaggt tgttctggcc gcatccaagt ctcccttttt aaaatcttgc
     8281 ttggtggcct gccaaaaggc aatcatgttg tagccatcta caatgagaac tttttctttc
     8341 atttagattt tcttccgaaa tacttcgtac atcagcacag cggctgctac gctggcgttg
     8401 agagattgga catggccctt cataggaata gtgatcatct catccacctg ctttttgata
     8461 ttactggaaa tccctttacc ttcgttgccg ataatgagag ctagcttgcc agctgtattc
     8521 cacttgtggc ttggggttcc gttcatatcg gtaccaaata cccagaaacc agcctccttg
     8581 agtttgtcga gggtttggct aagattggtc actcgggcaa ttggaacatg ggccaccgca
     8641 cctgttgagg tctttgccac aacgggcgtc acgccaactg ctcggtgctt gggaatgatg
     8701 atgccagcta cctgagtggc atctgcggtc cgcaaaatcg agccgaagtt gtgggggtct
     8761 gtcagaccgt ccaagatgag aatgagggga ttgtcttcct gctctgcctt ttccaaaatc
     8821 accgacaggt ccgcataggc aaactcagaa acccgcagga caaagccttg gtggaccgca
     8881 ccttctgtca tgtccgacag ggtcttcttg ggcgtccaag aaatcgacac ctttttctct
     8941 gctgccagcg ccttgatttt ttctacattt tttccgcgca aatcatcctg gatgtagagt
     9001 ttgttgccgg tgttggcctc caaactctcc accacagcgt gtacgccata tacaatatca
     9061 ttatgttcca tggttttatt atagcatatt tttgaaaagg aaaaagccga gaatttctca
     9121 gctttcttag ttcacactgt tttccaaata ataatgttgg gcaacatacc agttgacacc
     9181 cccttgttcc ggatctgtgt catattcgct tgcctctaac tccccacgac tattgatccg
     9241 ataactccaa tctcgtggtt caaaattagg gtctgatggt acagttacat ctgcatatac
     9301 tagaccatct tcagccatac gaacgcttat gacaacctgg tcttttcgat acttttcaat
     9361 catgacgcta cggctaaata aatcatccat gacccaagct tttacctgat ctgtcgttaa
     9421 gtttttggta tcaacctgcg gtacaggatt atgcaaatct gtcaacgaaa tccaaccctg
     9481 tcctgacttt aatctgcccc aactatgtcc ttccttttga gtcgtctcaa ctatcgtgta
     9541 cgttccaggt tctatattgg tcacaacttc tccagataaa ctaggttcct gacgaataac
     9601 cagtccttgt tttttaatat ccacagtaaa caattgaacg gcgctaccta cctgagactg
     9661 gctagaagct tgcgaacttc cagcagtctt actagtgact acctcactag ttgaactatc
     9721 cccaactacg gtagtatcct ttgcatctac atttttagca ataattaagt taaccgcact
     9781 tccccgcttt accttcttcc cactacttgg agaagataca ctaaccatcc caggctgaac
     9841 tgactgtcca ccaacttctg ttattgtacc aacttttaac ccctcttcat acagtaaatc
     9901 cttagcttca gatagctcaa taccatataa ttcaggaact gtaacttgag aaatatcttg
     9961 gtatacaaaa tataagccag ccattcctaa cacagccaca atacttgaaa tgattagcca
    10021 tatctttcgt ctttttgcgt ctgccaaacg tttctcagct tgctctcttt gataattctc
    10081 ataatcttcc tcagcttcgc taagcatttg ctggatgaca aatcgttgac tctcatccgt
    10141 aacctgtgct aagtgcaatc gtaattgaaa aattctatcc ttaaactctt tttcaatttg
    10201 acgctcatgc tctttttgca aaatgttatt ttgtttttga agtgctattg cttgagcact
    10261 catggctcgt gcttgtgcat tcatactcct aattttttca ttgtgtcgtt gctgtttctc
    10321 aaaagaattc attgcactca actctcccct ctcttcatcg cttaaaatct actccagagc
    10381 ttataggatt ggtattgcat ggtaatgcaa tacctgttgt acttagtata acagggcata
    10441 taaaaaagtg cctgtgcaaa caattagatt ttacttttct ttaaatcttc cctctatact
    10501 tcaactcaaa tagttgccca cggttagata gtgtggtatc cttatgctta tcaatttgtc
    10561 cggacaaacg gaatcgaaaa aggagatttt atgacactta tttttggaat tgtggcaggt
    10621 ctgattgcct ttgccatcgg tggtttgtgg tatggtttga ttttccgcga tgcttggatc
    10681 aaggcttcag gcattgacat ggctaaggta gaagcaaatc gtcaggctgg aaaaaatggt
    10741 cagaaggaaa tggtgatttc ccttgtcatt gaagtactga ctgctgttgt ggctattttc
    10801 ttcatcaaaa cccttgatgt ttcaccactc cacgcagctg gtggcatggg cgtgattgcg
    10861 gtccttgctt cattgaaaaa ctacgtcttt gagcaacgcc ctatcaacct catcctcatc
    10921 aacgaaagct acaaactagt ctgctaccta gtagtcggta ttctggctct atttgcataa
    10981 gatcaaccct cctagcttta ggagggtttt gtggtacaat agaaacagac taaaaccaaa
    11041 ggagccctca tgtccctctc cctccgcacc atcaaactga tatttgccac cgttctggct
    11101 atttacctag cgaccgccct gggcttgtct tatgcgacag ctgccggcat catcgccatt
    11161 ctcagcgtcc tcgacacccg caagtccagc ttcaaaatgg ctcgtaatcg tcttttctct
    11221 accctcctgg ccctgaccat agccgtcctg accttcgccc tctttggctt tggcatctgg
    11281 accctgggca tctacctggc cctctacgtc cctctggcct accgattcaa ctgggaggct
    11341 ggcatcgccc catcaaccgt cctcgtcacc catctcttgc tggagcagga tatttcgctg
    11401 atttttttgg gaaatgagct ggcgcttttt ctgattgggg caggactggc actcctgttc
    11461 aacctctata tgccctcgca agaaaagaaa atccaggcct atcacgacca agtcgaagac
    11521 ctgctcaagc agattctgct ccgctttgaa gcctttctgc taaatggcga cggacgaaac
    11581 gaggctgaat tgattacgca gttggatcag accttggagc aagctctgaa aatcgtctat
    11641 ctggaccgcc acaaccagct cttccagcag accaattacc aggtccatta ctttgaaatg
    11701 cgggccgcac aaaacaaaat cctgcggacc atggcaggaa atatcaacaa gtgtttactg
    11761 gaaggcagag aaaatgtcat cctgtccagc ctcttcgaac gaacagccca gcaactaagc
    11821 cgagaaaatt ctgccaagga actgcttatg gacatcgaac tcttccatgc caccttccgc
    11881 gagcgacctc tgccacaaac aagggaagaa tttgaaaccc gtgccaccct cttccaactc
    11941 ctacacgaca tggaagcctt tattcgcctc aaggttgatt tttatgaagt ttataaagat
    12001 gaagaaccgt cagtttaagc cgacggttct tctacttttc catgaaattc atctgatact
    12061 tggttgtgca aatgcacgaa agataggccc atcatgaccg cattccctgc aactgcaatc
    12121 ataaattctt ccttggaaga tacctttcct agccaaatgg agaggattaa aatgagatta
    12181 taaagcaaaa tataaagagc cgttatacga atttttttca atagtgcctt cataggaacc
    12241 tcctgtaagc gttttctatg acgctgggtt caatcccaac ctcacttcac agagttcgtg
    12301 tcaacatctc agcgcagtgg ttgattggca gattcggagt gttttacact ccaaatctga
    12361 cctaatcaac tgtgcggggg tgggaagacg aactcttttt ctaccatttg tcaagcctat
    12421 caaggtattt gatgaaaaat atgttaagtt caata
//
LOCUS       DASGAC010000051        11985 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.051, whole genome shotgun sequence.
ACCESSION   DASGAC010000051 DASGAC010000000
VERSION     DASGAC010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11985)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11985)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11985
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.051"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            220..777
                     /locus_tag="U1335_001086"
     CDS             220..777
                     /locus_tag="U1335_001086"
                     /inference="COORDINATES: protein motif:HMM:NF024194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family transposase"
                     /protein_id="HEM5231575.1"
                     /translation="MTKRRQAVSPMADVIAKKIFNDHEITIDFIDTFLGFRPKSVQIL
                     NGTIADVKKERTRHFSTTVDILARLEDGTQVIIEIQVAYQNSFIKRLWTYSCQHLVKD
                     LPNIREKVTQTHDMYNKISPIYSIALVASKYFDDEKPIHSFVLTEKDSGQILELPFGD
                     QEELKREWERTRPSIEEFVFPPPHS"
     gene            837..1304
                     /locus_tag="U1335_001087"
     CDS             837..1304
                     /locus_tag="U1335_001087"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231576.1"
                     /translation="MLTQTLRSALDFLPSLIIELKKFRKGQLRKNQRQWIEFFANREF
                     SQSTSDIIEKAENLLNRNTWTEEEIEMVDQWLRNASNHFGELESSFIRGRNRGKEEGR
                     AEGLEKGLEEGILQKSLDVAQKLLARGLDIEDVLEITGLTSEQLTRSSQEHQF"
     gene            1323..2435
                     /gene="glf"
                     /locus_tag="U1335_001088"
     CDS             1323..2435
                     /gene="glf"
                     /locus_tag="U1335_001088"
                     /EC_number="5.4.99.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HEM5231577.1"
                     /translation="MKHYDYLVVGAGLFGAVFAHEAAKKGKKIKVIEKREHIAGNIYT
                     KEVEGIQVHEYGAHIFHTSEKEIWDYVNQFAEFNRYTNTPVANYKGEIYNLPFNMNTF
                     NKLWGVVTPAEAEAKIAEQRAVLGGKTPENLEEQAISLVGTDIYEKLIKSYTEKQWEK
                     PCTELPAFIIRRLPVRLTYDNNYFNDTYQGIPIGGYTQIVEKMLDHENIDVETNVDFF
                     ANKEDYLATYPKIVFTGMIDEFFDYQLGELEYRSLRFETEVLDMENYQGNAVVNYTDS
                     ETPFTRIIEHKHFEFGTQEKTIITREYSKTWKRGDEPYYPVNNDRNNKLYTAYKRLAE
                     QQENVIFGGRLGHYRYYDMHQVIGVALQCVRNEVGE"
     gene            complement(2641..3186)
                     /locus_tag="U1335_001089"
     CDS             complement(2641..3186)
                     /locus_tag="U1335_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM5231578.1"
                     /translation="MTNVLFLVGSLRDGSFNHQMAKKAEAFLADKAQVSYIDLAKIPL
                     FNQDIETPILPEIAELRAQVDAADAIWIFSPVYNYAIPGIVKNALDWLSRSLDLSNPK
                     GPSILQDKITTVSAVANSGHDHLFKDFQHLLPFIRTQIAGKFTGLTINPEAWGTGVLE
                     LSDETLAKLEQQAADLLAAIQ"
     gene            complement(3249..3698)
                     /locus_tag="U1335_001090"
     CDS             complement(3249..3698)
                     /locus_tag="U1335_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM5231579.1"
                     /translation="MRTVEQSLNENKHALHSLVVFRRAANTITKSELETIKKYGLTVC
                     QFGVMEALYNKGNLRIQDLIDKLLSTSGNMTVVIKNMIRDGYIYKTIDTNDRRASLIT
                     LTPLGRETIEKILPEHYDHVGEIFSVLSSEEQDQLAEILKKFKNQQT"
     gene            3912..4409
                     /locus_tag="U1335_001091"
     CDS             3912..4409
                     /locus_tag="U1335_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5590 domain-containing protein"
                     /protein_id="HEM5231580.1"
                     /translation="MEKKIFQLLEVLATKKGQLIAGSFILLSVMTFSIFVIWDLAAKP
                     FSDVQNHAISVARDYTDMEVVDDVSIYNGTETYFSVQGKTSQGEMIAVIIPEETNTVY
                     VYPMANGISKEEAQAVATENGASAADRVILGFRDDKPIWEVKSGTAYYLVEFETGNFI
                     KREGL"
     gene            4406..5587
                     /locus_tag="U1335_001092"
     CDS             4406..5587
                     /locus_tag="U1335_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002267262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM5231581.1"
                     /translation="MSKLSRRVLEMEESVTLAAGARAKALKAEGRDILELTLGEPDFV
                     TPKNIQEAAIQSIENGKASFYTVASGLPELKDAVNTYFENFYGYSIERNQVVLATGAK
                     FVLYAFFTAVINPGDEVIIPTPYWVSYADQIKMNEGVPVFVTASEEHNFKVTVDQLEA
                     ARTDKTKVFLLNTPSNPTGMIYSREELEAIGNWAVEHDILILADDIYGRLVYNGNTFT
                     PISSISESIRQQTIVVNGVAKAYAMTGWRVGFAVGNPEIIAAMSKIVGQTTSNLTTAA
                     QYAAIEAFTGPQDTVETMRQAFEERLNTIYPLLAEVPGFEVIKPEGAFYLFPNVKKAM
                     EMKGYTDVTEFTTAILEEVGVALVTGAGFGAPENIRLSYATDMDTLKEAVARLHTFMK
                     K"
     gene            5602..6948
                     /gene="asnS"
                     /locus_tag="U1335_001093"
     CDS             5602..6948
                     /gene="asnS"
                     /locus_tag="U1335_001093"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000038477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HEM5231582.1"
                     /translation="MSRKLITINQVKDYVGQEVTIGAWVANKSGKGKLAFLQLRDGTA
                     FFQAVAFKPNFIEKFGEEAGTEKFDVAKRLSQETSVYVTGIVKEDERSKFGYELDVTD
                     LEVIGESQDYPITPKEHGTDFLMDNRHLWLRSRKQVAIQQIRNAIIYATYEFFEKNGF
                     IKFDSPILSGNAAEDSTELFETDYFGQPAYLSQSGQLYLEAGAMALGRVFDFGPVFRA
                     EKSKTRRHLTEFWMMDAEYSFLSHEESLDLQEAYVKALIQGVIDRAPQALETLERDVD
                     ALKRYIAEPFKRVAYDDAITLLQEHEADEDTDYEHIEHGDDFGSPHETWISNYFGVPT
                     FVVNYPASFKAFYMKPVPGNPERVLCADLLAPEGYGEIIGGSMREDDYDALVAKMDEL
                     GMDKSEYEFYLDLRKYGSVPHGGFGIGIERMVTFVAGTKHIREAIPFPRMLHRLHP"
     gene            7052..7513
                     /locus_tag="U1335_001094"
                     /pseudo
     CDS             7052..7513
                     /locus_tag="U1335_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775027.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
     gene            7734..8579
                     /locus_tag="U1335_001095"
                     /pseudo
     CDS             7734..8579
                     /locus_tag="U1335_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775027.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
     gene            8630..9007
                     /locus_tag="U1335_001096"
     CDS             8630..9007
                     /locus_tag="U1335_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEM5231583.1"
                     /translation="MKTIHTDKAPAAIGPYVQGKVVGNFLFASGQVPLSPETGEVVGE
                     TIQEQTEQVLKNIAAILSEAGTDFDHVVKTTCFLKDMNDFVAFNEVYKTAFSVDFPAR
                     SAVEVARLPRDVKVEIEVIAVID"
     gene            9029..9916
                     /gene="rapZ"
                     /locus_tag="U1335_001097"
     CDS             9029..9916
                     /gene="rapZ"
                     /locus_tag="U1335_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002933011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HEM5231584.1"
                     /translation="MSDKLHLVIVTGMSGAGKTVAIQSFEDLGYFTIDNMPPTLLPKF
                     LELIRHSQDNNKIALVVDMRSRSFFSEIREVLDEIEGAEDLDFKVLFLDATDSELVAR
                     YKETRRSHPLAADGRVLDGIQLERELLAPLKNMSQNVIDTTELTPRNLRKAISEQFAS
                     QDNQPSFRIEVMSFGFKYGLPLDADLVFDVRFLPNPYYKLELRNLTGLDAPVFDYVME
                     HQESEEFYSHLLGLIEPILPGYQKEGKSVLTIAVGCTGGQHRSVAFAKRLADDLEKNW
                     NVNRSHRDKDRRKETVNRS"
     gene            9913..10887
                     /locus_tag="U1335_001098"
     CDS             9913..10887
                     /locus_tag="U1335_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YvcK family protein"
                     /protein_id="HEM5231585.1"
                     /translation="MRKPKITVIGGGTGIPVILKSLRDKDVEITAIVTVADDGGSSGE
                     IRQALQVTPPGDLRNVLLAMSDMPKLYEQIFQYRFAESDGPLAGHPLGNLIIAGISEM
                     QGSTYNAMRLLTRFFHTTGRIYPSSEQALTLHAIFTDGTEVAGESKISKHNGMIDHVY
                     VTNSYNDDEPKASRQVVETIMESDMIVLGPGSLFTSILPNLMISDIGKALKATKAEVT
                     YVCNIMTQRGETEFFSDADHVAVLNAHLAEQFIDTVLVNIEPVPQEYMNSNQFDEYLV
                     QVKHDFAGLQKQANRVISSNFLRLENGGAFHDGDLVVEELLKILQVRP"
     gene            10884..11801
                     /gene="whiA"
                     /locus_tag="U1335_001099"
     CDS             10884..11801
                     /gene="whiA"
                     /locus_tag="U1335_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein WhiA"
                     /protein_id="HEM5231586.1"
                     /translation="MSFTVQVKEELLLQSSQNKSELSAIIKLSGSLGLASSGLTLSIS
                     TENAKIARHIYELLLHFYQIKAEIRHHQKPNLKKNRVYAVLIEDGVNEILNDLHLADS
                     FFGLETGISPLVLENDSWSQAYLRGAFLAAGSVKDPEKGKYQLEIASVYSDHANDLAN
                     LMQKFLLDAKVIERSKGTITYLQRAEDIMDFLLVIGAEEAKTEFENVKLLREARNDLN
                     RATNAEAANIAKTVNASMKTINNIIKIMDTIGLDQLSGDLQEIAQLRIQHPDYSIQQL
                     ADSLTVPITKSGVNHRLRKINKIADELTD"
BASE COUNT         3413 a         2228 c         2843 g         3501 t
ORIGIN      
        1 caattttgtt attgcctacg atattataag caattgagac tgaagatata ggcatatgga
       61 aaaatagaaa ttggagcgtt tttaggggaa cgttttttag tgctactata caggacggtt
      121 actagaaaat ttttagatgt catgctataa tatagctaga atattttccg aataaatagg
      181 tagagagtat ttcttaatca tattatttgg aggatagaga tgacaaaacg tcgtcaggca
      241 gtcagtccca tggctgatgt tattgcaaaa aagattttca atgaccacga aattaccatt
      301 gactttattg ataccttttt aggttttcgt cccaaatctg ttcagatatt gaatgggact
      361 atcgcggatg tgaaaaaaga aaggactaga cactttagta caacggtaga tattttggct
      421 cggttagaag atgggacaca ggtcattatc gagattcagg ttgcctatca aaatagtttt
      481 attaagcgtt tgtggactta ttcctgccaa catttggtga aggacttgcc caatattcgt
      541 gagaaggtca cgcagacgca tgatatgtat aataaaattt ctccgattta ttcgatagct
      601 ttagtagcga gtaagtattt cgatgatgaa aaacctatac acagttttgt attgactgaa
      661 aaagatagcg gtcaaatctt agaattacca tttggtgacc aggaagaatt aaagagggag
      721 tgggaaagaa ctcgaccatc catagaagag ttcgttttcc cacccccgca cagttgatta
      781 ggtcagattt ggagtgtaaa acacgaacaa atctgccaat caaccactgc gctgagatgt
      841 tgacacaaac cctgagaagt gcgctggact ttttgcccag ccttatcatt gagctgaaaa
      901 agtttcgtaa gggtcaactt aggaaaaatc aacgccaatg gattgaattt tttgcaaata
      961 gagaatttag tcaatcgaca tctgatatta ttgaaaaggc agagaatctg ctaaacagaa
     1021 atacatggac agaggaggaa atagaaatgg tagatcaatg gttgcgtaat gcttccaacc
     1081 actttggaga attggaaagt tcttttatac gtggtagaaa tcgtggaaag gaagaaggaa
     1141 gagctgaagg tctagagaaa ggtctagaag aaggaattct acaaaaaagt ttagatgttg
     1201 cacaaaaatt attagctaga ggtcttgaca tagaggatgt gttagaaata acaggactaa
     1261 cttcggaaca gttgactcga tcttcgcaag aacatcagtt ctaggaggaa aatacaaaat
     1321 atatgaaaca ttacgactac ttagttgttg gtgcaggtct gttcggagcg gtctttgctc
     1381 atgaggcagc taaaaagggt aaaaaaataa aggttatcga aaaacgagaa cacattgcag
     1441 gtaacatcta tacaaaagaa gtagaaggta ttcaagtcca tgaatatggc gcgcatattt
     1501 tccatacttc tgaaaaagaa atttgggatt atgtgaatca gtttgctgag ttcaatcgct
     1561 atacaaacac accagtcgcc aactacaagg gtgagattta caatcttccc ttcaacatga
     1621 atacctttaa caagctttgg ggtgtggtga cccctgctga agctgaagcg aagattgctg
     1681 agcaacgagc tgtattggga ggtaaaacac ctgagaactt ggaagagcaa gccatctcac
     1741 tagttggtac agacatctat gaaaaattga tcaagtccta caccgagaaa caatgggaaa
     1801 agccgtgtac ggagttacca gccttcatca tccgtcgctt gccagtgcgt ttgacttatg
     1861 ataataacta ctttaacgat acttatcaag gtattccaat cggcggttac acgcagattg
     1921 ttgaaaaaat gttggatcat gaaaatatcg atgtggagac aaatgttgat ttctttgcca
     1981 ataaggaaga ctatttagct acctatccga agattgtctt tacaggaatg attgatgaat
     2041 tctttgatta ccaacttggt gaattggaat atcgtagcct tcgatttgag acagaagtgt
     2101 tggatatgga aaactatcag ggtaatgcgg tggtcaacta caccgatagt gaaacaccgt
     2161 ttactcgtat aatagaacac aaacatttcg aatttggtac acaagaaaaa accattatta
     2221 cacgtgagta ttcgaagacc tggaaacgag gcgatgagcc atattatcca gtcaacaatg
     2281 atcgcaacaa caaactctat actgcttata aacgcctcgc agaacaacaa gagaatgtta
     2341 tttttggtgg acgtcttggt cattatcgtt actacgatat gcaccaggtt atcggtgtgg
     2401 ccttgcaatg tgtgagaaat gaagttgggg aatgattttg agaagtcatc aaagtagtaa
     2461 ttgattcttg gcagaagttg atactcttcg aaaatcaaaa ttatccgttg tcaacttgcc
     2521 ttgatgaact ccagttctat cttcgacttc gtttcctagg ctacttttga ttttcgttga
     2581 gtatgaaatg ctctcaaaat attaatcaaa aaaaaaaacc agaaattctg gtttttttga
     2641 ttattgaatt gctgccaaca ggtcagctgc ctgttgctcg agttttgcta gagtttcgtc
     2701 agataactcc aatacacctg ttccccatgc ttctggattg atggttaaac ctgtaaattt
     2761 accagcaatc tgagtgcgaa taaatggaag aaggtgttgg aagtctttga ataggtggtc
     2821 gtgaccgctg ttagcgacgg cagagacagt tgtgatttta tcttgtagga tagatggtcc
     2881 ttttggattg gataaatcga gcgaacgact gagccaatcg agagcatttt ttacgatgcc
     2941 tgggattgca tagttatata ctggtgagaa aatccagata gcatccgcag cgtctacttg
     3001 tgcacgtagc tctgcaattt caggaaggat aggtgtctcg atgtcttgat tgaatagggg
     3061 aatttttgca agatcaatgt aagatacttg agccttatca gccaagaacg cttcagcttt
     3121 ttttgccatt tgatggttaa aagagccgtc acgtagtgaa ccaactaaaa acaatacgtt
     3181 tgtcatgatg gcctcctttt cataaaaaca taaatttagt atatcgtatt tgtcttttgt
     3241 tggcaaacct aggtctgctg attcttgaat tttttaagta tctcggctaa ttggtcttgt
     3301 tcttctgaac taaggacaga aaaaatctct ccaacgtgat cataatgctc tggaaggatt
     3361 ttttcaatgg tttcgcgtcc aagtggagtg agagtaatca aggaagcacg acggtcattt
     3421 gtatcgatag tcttgtagat ataaccatct cgaatcatgt tttttataac gacagtcatg
     3481 ttgccagaag tacttaataa tttatcaatt aagtcttgaa tccgcagatt tcctttgttg
     3541 tagagtgcct ccatcactcc aaactgacaa actgtcagtc cgtatttttt gattgtttct
     3601 aattctgatt ttgtgatagt attagctgct ctgcgaaaga cgactagact gtgaagtgca
     3661 tgcttgttct cgtttaaaga ttgttcaaca gttctcatga gaatatttta gcaataaata
     3721 gctcggttat caagcaaaaa aagttaaatc ctatattcat aggtagagta ggttatatag
     3781 catggaggag ctgaactgtg ggtcccagtt cttatattcg ttctctgtct gaaggagaat
     3841 gaaagtttat tcataattca attacggaaa aaatggaaat atgctttaac ttgtagtata
     3901 ataggactac tatggaaaaa aagatttttc aacttttgga agtattggca acgaagaagg
     3961 gacagctgat agctggttcc tttatactcc taagtgtcat gactttttcg atattcgtta
     4021 tttgggacct tgcagctaag cctttttctg atgtgcagaa tcacgctatt tctgtagctc
     4081 gagactatac ggatatggag gttgttgatg atgtctctat ctacaacggg acagaaacat
     4141 actttagcgt gcaaggaaag acgagtcagg gggaaatgat tgcggttatc attcctgaag
     4201 agacaaatac tgtgtacgtt tatccaatgg cgaatggtat ttctaaggaa gaagcgcagg
     4261 cagtcgctac agagaatggt gcgtcagcag ctgatagggt gattctaggt tttagggatg
     4321 acaaaccaat ttgggaagtc aaatcaggta ctgcctacta tttagttgaa tttgaaacag
     4381 ggaactttat caaacgggag ggcttatgag caagttatca agacgagtct tagagatgga
     4441 agaaagtgta actctggcag caggtgcgcg tgcaaaagcc ttgaaggcgg aaggacgtga
     4501 tattttagag ctgaccttgg gtgagccaga cttcgttaca ccgaagaata tccaagaagc
     4561 tgctattcag tctatcgaaa atggtaaggc gagtttttat acggtagctt cagggcttcc
     4621 tgagttgaag gacgcagtca atacctactt tgagaatttc tatggctact ctatcgaacg
     4681 caatcaagtt gttcttgcga caggtgctaa gtttgttctt tatgcctttt ttacggcggt
     4741 catcaatcct ggtgatgagg tgattattcc gacaccttac tgggtttcct atgctgacca
     4801 gattaagatg aacgaaggcg tgcctgtctt tgtcactgca agtgaagagc acaatttcaa
     4861 ggtaacagtt gaccagctgg aagcagctcg gacagataag accaaagtat tcctactcaa
     4921 cactccttct aatccgactg gcatgattta cagtcgtgag gaattggaag ctattggaaa
     4981 ctgggctgta gagcacgata ttctcatctt ggcagacgat atttacggtc gtttggtata
     5041 taatggaaat acctttacac cgatttcaag catttcagaa agcattcgtc agcagactat
     5101 tgttgtcaat ggggtggcca aggcctatgc catgacaggt tggcgggttg gatttgccgt
     5161 tggtaatcct gagattattg cggccatgag taagattgtc ggacaaacga cttcaaactt
     5221 aacaactgct gctcaatatg cggccattga agcctttaca ggtccgcaag atacggtcga
     5281 aaccatgcgt caggcctttg aagagcgact caataccatt tatcccttgc tggcagaagt
     5341 accaggtttt gaggttatca agccagaagg cgccttctat ctcttcccta atgtcaaaaa
     5401 agctatggaa atgaagggct acacagatgt aactgaattt accacagcta tcctggaaga
     5461 agtcggtgtg gccttggtga cgggtgcagg ttttggagct cctgagaata tccgcctcag
     5521 ctatgcgact gatatggaca cgcttaaaga agccgtggct cgactacaca catttatgaa
     5581 aaaataaaaa gaggaaaaat aatgtctaga aaattgatta ccatcaacca agtaaaagat
     5641 tatgtcggtc aagaagtgac cattggtgcc tgggttgcca acaaatcagg taagggcaag
     5701 ttagccttcc tgcaattgcg tgacggaaca gccttcttcc aagcagttgc tttcaagccg
     5761 aacttcatcg aaaaattcgg tgaagaagct ggtactgaga agttcgatgt agcaaaacgc
     5821 ctcagccaag aaacgtctgt ttatgtgaca gggattgtca aggaagacga gcgttctaag
     5881 tttggttatg agttggatgt gacagacctt gaagtgatcg gtgagtcaca agattaccca
     5941 atcacaccaa aagaacacgg tacggacttc cttatggata accgtcatct ctggttacgt
     6001 tctcgtaaac aggtcgctat ccagcaaatc cgtaacgcca tcatctatgc gacttatgaa
     6061 ttctttgaaa agaatggctt tatcaagttt gatagcccaa tcttgtctgg aaatgcggca
     6121 gaagattcga ccgagttgtt tgaaacggac tactttggtc aaccagccta tctcagtcaa
     6181 tcaggtcagc tttatcttga ggctggtgct atggcccttg gtcgtgtttt cgacttcgga
     6241 cctgttttcc gtgcagaaaa atcaaaaacc cgccgtcact tgacggagtt ctggatgatg
     6301 gatgccgagt attcattcct cagccatgaa gagtcacttg atttgcaaga agcttatgtc
     6361 aaagccttga ttcaaggtgt tatcgaccgt gctccacaag ccttggaaac tcttgagcgt
     6421 gatgtggatg ctcttaaacg ctacattgca gaaccattca aacgtgtggc ttatgatgat
     6481 gccattactc ttctgcaaga gcatgaagct gatgaagata cagactacga acacatcgag
     6541 catggtgatg actttggatc accgcatgaa acttggattt caaactactt tggtgtaccg
     6601 actttcgtgg tcaactatcc agcaagcttc aaggccttct acatgaagcc ggttccaggt
     6661 aatccagagc gtgtgctttg tgcggatctc ttggcgccag aaggctacgg tgaaatcatc
     6721 ggaggctcta tgcgtgaaga cgattacgat gccttggtgg ccaagatgga cgagctcggc
     6781 atggacaagt cagaatacga attctacctt gaccttcgta aatacggttc agtaccacac
     6841 ggtggttttg gtatcggtat tgagcgtatg gtaaccttcg ttgctggtac aaaacatatc
     6901 cgtgaagcca ttccgttccc acgtatgttg caccgcttgc atccataagc atatcaatag
     6961 atatacgaac agactacaaa cgtggtctgt tttcttgctt tttcacttga ttttatttat
     7021 aattattcta aataaaatcg tggagaggaa aatgaagcaa gaaagtttag gaaaagaaat
     7081 tattcgtttg gccctgccag cgacggtgga aaatatcttt cagaccttgg ttggttttgt
     7141 ggataccctc ttgattgcac aactggggct ggtagcggtg acggcagttg ggcttgccaa
     7201 tacgattttg aatgtctatt tggcggttta catagctttg ggagttgggg caactgcttt
     7261 gattgctcgg tctattggcg caggagatag ggaatctctt acctttcatg tccgtcaagc
     7321 cttagtgctt tcagtaggtg taggcctact attgggttta ctatccctta tttttgggcg
     7381 gcagatgctg gtcttaatgg gagcagatgc ggagagtttg gctggcgccc aggcattttt
     7441 ttactgggtt ggtggtttga ctattttaca agctctgatg accattttgg gaacaatctt
     7501 gcgggcatct ggggagtggg aaagaactcg actagttaaa aaagagttcg tcttcccacc
     7561 cccgcacagt tgattaggtc agatttggag tgtaaaacac gaattgctga gatttgcttc
     7621 gcaaatctta tctccaacct ttaacagtcc actggactgt taaacccaat caaccactgc
     7681 gctgagatgt tgacacgaac tctgaaaagt ggtgctaggc tttttgcaca acccctatga
     7741 aaatgagctt actgaccaat ggttttaatg tggtcttgga ctatttcttg atttttggta
     7801 ttggctcctg gtcaggtctg gggattgtag ggacagcctt gggaaccgtc ttagctcgct
     7861 tgcttggtac tgtcttgctt taccgaaagg tgcaacagac tgacttggca gttgatctca
     7921 aacaattgtt ccacttcgga agtcctaagg aaatggtgga tttgacccta cctgcagcct
     7981 tagaacgctt ggtcatgcgg ttggggcagg tggtctattt cagtttgatt gtggggctgg
     8041 ggacgactgt ctatgcttct cacatgattg caggcaatat cgagagtttt acctatatgc
     8101 cagcctatgg tcttgcgaca gcggcagcgg ttttgatcgg tcaagccttg ggaaaggggg
     8161 acatcctcac agttagacga gtcgcattta tcagctctgc ctatggagta gctatcatgt
     8221 cactgctagg taccatctta tttttcggag ctccaagttt tgctctgcta tttaccaaag
     8281 acctagaagc cgtccgtcaa gtcgtcatag ccctgcggat tgatgccttc aaccagccgg
     8341 ggctggcggt ttctttgatc atggctggcg cactgcaggg cttgggggat accaagtcgc
     8401 ctctctactc cacagcggcc gggatgtggg ggctgcgcgt ctctggtgtt gtcgtcttag
     8461 gtcagatgtt cggtttagga attgctggcg tctggctgtc gattttgatt gacctgttgt
     8521 tacgagcgat ttttttgacg tggagattta cagtaaaaac acgaaaactg gctgaatagg
     8581 tcagtttttt ggtataatat caatagaaag ataaaaagga gatcatcaga tgaaaaccat
     8641 tcacacagat aaggcacctg cagcaattgg cccatacgtt caagggaagg ttgttggaaa
     8701 tttcctattt gcctctggtc aagttccttt gtcacctgaa actggtgaag tggttggtga
     8761 aaccattcag gagcagactg agcaagtctt gaaaaatatt gcagcaattt tatcagaagc
     8821 aggaacagac tttgaccatg tggtgaagac gacttgtttc ctaaaagata tgaatgattt
     8881 tgtagctttt aatgaagttt ataaaacagc tttctcagta gattttccag ctcgttcagc
     8941 ggtagaagtt gcacgtttgc cacgtgatgt taaggttgag attgaagtta ttgcagttat
     9001 tgattagaag agaaaaggag ggaatgtcat gtcggacaaa ctccatttag tgattgtgac
     9061 agggatgtcg ggagctggta agacggtagc tatccagtct tttgaagact tgggttattt
     9121 caccattgat aatatgccac cgactctctt gccaaagttt ttagagttga ttcgccatag
     9181 ccaggataac aataagattg ctcttgttgt agatatgcgg agtcgctcct tcttttcgga
     9241 gatccgagag gtgttggatg agattgaggg ggcagaggat ttagatttta aagtcctatt
     9301 cttggatgcg acggatagtg aattggttgc tcgctataaa gaaactcgtc gttcccatcc
     9361 tttggcggct gatggtcgtg ttttggacgg gattcagcta gagcgtgaac ttttggctcc
     9421 cttgaaaaat atgagtcaaa atgttattga cacgactgag ctgactcctc gtaatctccg
     9481 taaggcaatc tcggagcagt ttgctagtca agataatcag ccgtcgtttc gcatagaagt
     9541 gatgtccttt ggtttcaaat atggactacc tctggatgcc gacttggttt ttgacgttcg
     9601 gttcttacca aatccctact acaagttaga gttgcgtaat ctgactggtc ttgatgctcc
     9661 tgtctttgac tatgtcatgg agcatcaaga atcggaagag ttttatagtc atttgctcgg
     9721 cttgatagaa cctattcttc ctggttatca gaaggaagga aaatcagttc taacgattgc
     9781 tgttggatgt acgggtggtc aacatagaag cgtagccttt gctaaacgct tggcagatga
     9841 tttagagaaa aattggaatg tcaatcgtag tcatcgtgat aaggacagac ggaaggagac
     9901 ggtcaaccgc tcatgagaaa accaaaaatt acagttatcg ggggcgggac tggtattcca
     9961 gtcattttga agagtttgcg ggataaggat gtagagatta ccgctatcgt gacggtagct
    10021 gacgatgggg gctcctctgg ggaaattcgg caagctttgc aggtaactcc tccaggtgac
    10081 ttacgcaatg tccttttagc gatgtcggat atgcccaaac tttatgagca aatttttcaa
    10141 tatcgatttg cagagtcgga tggtcccttg gctggtcatc cactagggaa tctcatcatt
    10201 gctggcattt cagaaatgca gggttcaacc tacaatgcga tgaggttgtt gacgcgcttt
    10261 ttccatacga cagggcggat ttatccatct agcgaacagg ccttgaccct tcatgctatt
    10321 tttacagacg ggaccgaggt agcaggtgag agcaagattt ccaagcataa tgggatgatt
    10381 gatcatgtct atgtgacaaa ttcttataac gatgatgaac cgaaagccag tcgtcaggta
    10441 gttgaaacaa ttatggaaag tgacatgatt gtacttggac cgggttctct ttttacctca
    10501 atcttgccga atctgatgat ttctgatatt ggcaaagccc taaaagcaac caaggctgaa
    10561 gtgacctatg tgtgcaacat tatgacccaa cggggagaga ctgagttttt ctcagatgcg
    10621 gaccatgtgg cggtcctcaa tgctcaccta gctgaacaat tcattgatac agttttggtc
    10681 aatattgagc cagtcccaca agagtatatg aatagcaacc agtttgatga atacttggta
    10741 caggtaaaac acgattttgc aggtttgcaa aaacaggcta atcgtgtgat ttcttcgaat
    10801 tttcttcgtt tggaaaatgg cggagctttc catgatggtg acttggtggt agaagagttg
    10861 ctcaagattt tgcaggtgcg accatgagtt ttacagtaca agtaaaggaa gaattgctgc
    10921 ttcagtctag ccaaaataag agcgagctat ctgctattat caaattatca ggtagtttgg
    10981 gcctagcttc atcaggtttg actctttcta tcagcacgga aaatgcaaag attgcccgtc
    11041 acatttatga actgttactc catttctacc agattaaggc tgagattcgc catcatcaaa
    11101 aacctaatct caaaaagaat cgtgtgtatg cagttttgat agaagacggc gtgaatgaga
    11161 tattgaacga tttgcatttg gctgatagct tctttggatt agagacgggg atttctccct
    11221 tggttttgga aaatgattcg tggagtcaag cctatcttcg tggagcattt ttagcggcag
    11281 gctctgttaa ggatcctgaa aaaggaaaat accagcttga aatagcttct gtctatagtg
    11341 accatgccaa tgacctggcc aatctgatgc agaaatttct tttggatgcc aaagtcattg
    11401 agcgaagcaa gggaaccatt acctatctgc aacgtgcaga ggacattatg gattttcttt
    11461 tggtgattgg agcagaagag gcaaagacag aatttgagaa tgttaaattg cttcgtgagg
    11521 ctcgcaatga cctaaatcga gctaccaatg cggaagccgc taatattgca aagacggtca
    11581 atgctagtat gaaaacaatc aataatatta tcaaaattat ggatactatc ggtctagatc
    11641 agttgtcagg tgacttgcag gagattgccc agttgcgaat tcagcatcca gactattcca
    11701 ttcagcaatt ggcggatagt ctaacggtac cgatcactaa aagtggtgtc aaccatcgtt
    11761 tgcgaaaaat caataagatt gcggatgaat tgactgacta gataggtata catagaatgt
    11821 tatagtcatt tgaattaact ttgatacctc gtcactttcg gcttgccgta ctctattatt
    11881 gcttgcacct cagttccttg tctgaaagtt aattcattcg acgatactaa gactggttcg
    11941 agagaaccag ttttttgtat tagctgtgat atagtagagt gaatt
//
LOCUS       DASGAC010000052        11729 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.052, whole genome shotgun sequence.
ACCESSION   DASGAC010000052 DASGAC010000000
VERSION     DASGAC010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11729)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11729)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11729
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.052"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..1561)
                     /locus_tag="U1335_001100"
     CDS             complement(<1..1561)
                     /locus_tag="U1335_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HEM5231587.1"
                     /translation="MPEIQKTDWWKKSVIYQIYPRSFQDSNGDGIGDIRGIISRLDYL
                     YELGIDAIWLSPVYQSPMDDNGYDISDYQGIAPEFGTMEDMEELIAEGHKRNIKIIMD
                     LVLNHTSDEHFWFQEALKGPDNPYYDYYVWADEPNELRSTFSGSAWEYVPHLNKYYLH
                     QFSVKQPDLNWKNPALKQEIWDMINFWIEKGVGGFRLDVIDLIGKEPEKLITADGPTL
                     HPLIQELNEKTFGAYDLVTVGETWSANPENAQLYSHPDRKEFSMIFQFEHVGLDQQEG
                     KEKWDLAPLDPARLHKVLSKWQTELVGKGWNSLFWNNHDLPRAISRFGDDRPAFRELS
                     GKMLAIYLHFMSGTPYIYQGEEIGMINTPITDVSQADDIETRRMYAERIENGFTKEEL
                     ITSINAKGRDNARRPMQWTEAEGAGFSTGQAWLALGDTVKDINVEKALADKNSLFYTY
                     QKLIALRKEYPCMSEGKYEVMETGNSLVMAYRKYDEQDDFIILVNFTSDEQTYEVSSE
                     RYSMFIHNYENG"
     gene            complement(1634..3082)
                     /gene="gtfA"
                     /locus_tag="U1335_001101"
     CDS             complement(1634..3082)
                     /gene="gtfA"
                     /locus_tag="U1335_001101"
                     /EC_number="2.4.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sucrose phosphorylase"
                     /protein_id="HEM5231588.1"
                     /translation="MKIKNQAMLITYSDSLGKNLKDLKKVLEGPLKDVVGGIHILPFF
                     PSSGDRGFAPMDYTKVDPAFGDWSDIEVLSKDYYLMFDFMINHISAKSPYFLDFLEKK
                     DESAYADLFIRYKNFWPNGEPTQEDVDLIYKRKPRAPYRIATFADGSEEKVWCTFDEQ
                     QIDLDVTTETTRRFIQENLEQLAEHGASIIRLDAFAYANKKIGTNCFFVEPDIWEMLH
                     FPRQLLAPKDVEILPEIHEHYTIQQKIAEQDYYVYDFALPMLVLHALYSGHVNRLVHW
                     MEICPRKQFTTLDTHDGIGVVDVKDLLTDEETEETREALYAQGANVKKIYSTEAYNNL
                     DIYQINCTYYSALGNNDQAYLLARVLQCFAPGIPQIYYVGLLAGENDIELLESSKEGR
                     NINRHYYDLEEIEQEVQRPVVQSLFKLLKFRNTSPAFDGEFSVKMLDETSMEIFWNNQ
                     DAGVSARLTANLKEKTFEIVEIEEGKITTIEL"
     gene            complement(3152..3982)
                     /locus_tag="U1335_001102"
     CDS             complement(3152..3982)
                     /locus_tag="U1335_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM5231589.1"
                     /translation="MNTQKQKNWWVYLVLFSGILFMFIPLLVTIISSFKPTKEITSNF
                     FGLPENFTLNNYERLFNDGVVQYFGNSALITIVAVGLILLVIPMAAFAVARQMKRQTV
                     FNFIYFFLIIGIFVPFQVIMLPMTKLMSSLGLNNIVGLIILYLTYAVPQALFLYVGYI
                     KTIVPEEMDEAAAIDGCDKFTMYWKIIFPLMKPMHATVLIINALWVWNDFLLPLLVLN
                     RDQSMWTLPLFQYNYQGMYFSDYGPSFASYVVGIIPILLVYLIFQKHIISGMTSGSVK
                     "
     gene            complement(3993..4865)
                     /locus_tag="U1335_001103"
     CDS             complement(3993..4865)
                     /locus_tag="U1335_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5231590.1"
                     /translation="MNQKGFIAKYWPYLFVAIPIGLQLIFFFYPLFTGIYYSLTDWNG
                     LTSDFSLIGIQNYLDILKNPDFYTSMTFTIIFTIGLVIGEIVIGIWLASLLNRKIKAV
                     GFFRTWYFFPAVLSTVTLGLIFVQLFNYGFTQIGEILHIDWLMENLLVQENTVIPAVL
                     FVALWQGLAMPVIIFLSGLQSIPEDVKEAAAIDGATRSQQFFNIELPFLLPSISMVFI
                     LAMKSGLTAFDLIFALTSGGPDGKTESLGLLVYNYAFVDNKFSYANALAVVLFIFIIV
                     ISLIQMRISKKFEI"
     gene            complement(5003..6241)
                     /locus_tag="U1335_001104"
     CDS             complement(5003..6241)
                     /locus_tag="U1335_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM5231591.1"
                     /translation="MKMKTFLKCASVCAFASFLVACGNASGGSDKVEIEYFSQKPEMQ
                     ATLQEIIDEFEKENPTIDVKFSNVPDAGTVLKTRMANNEAPDVINIYPQNADFKAYAA
                     DGRFLEIGDDAGLSHLKDGAVTPYLVNEKNYTLPLTANAYGIYYNKDKFKELGLEVPT
                     TYAEFVALVDKIKADGSAAPFALSLNDAWSLNGYHQLAWVTVAGGFDGAEDILIRSAK
                     GAIQDDATTKAVLERLQLLTDNGQKGATGALYADAVAAFAAGDALMLPQGTWAATAVN
                     QQEPEFKYGMFTFPGDKEGGDYTIGAADLALSISADTEHPEESKKFLEYLSRPEVIQK
                     YYDVDGSPTSVEGVDTEGKFEETAGVTQYAFTDKHVVWLQSEWESEEEFWNITVEAVK
                     NPNSGELVKKLNAFFDPMKK"
     gene            complement(6254..8428)
                     /locus_tag="U1335_001105"
     CDS             complement(6254..8428)
                     /locus_tag="U1335_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HEM5231592.1"
                     /translation="MNVIEIYNEKQIFHLKTREFSYIIQVLETGDLVHRYFGKKIEKF
                     SDGNKITYLDRSFSPSPITGDRTYSLDVLPLEYSSNGLGDFRTSALDVRNEFGVTLDL
                     KYKEYRLYKGKKELRGLPASFGNQEEVESLEIDLYDQLTDITVTLQYSVFEEASYLAR
                     SATIQTGKYPCKLEKVLSATLDFPHQDFIVHSLAGRYAYEKEWTQTPLTKGQYSIGSI
                     RGASSHSRTPFLALASPDASEDKGDVYAAHLVYSGNFTAFVETTAMETSRLGLGLESH
                     YFSWQLDKDDRFQTPEVLLSYTDKGFTGMTQNSHHFITKHLIRSSFVNKPRPILINNW
                     EATYFEFTEEKILQLAQVASRAGIELFVLDDGWFGKRNNDESSLGDWKVNLDKLPNGL
                     NGLADRINELGMKFGLWFEPEMISIDSDLYREHPDWAIRTEGRLPIYSREQLVLDLTK
                     QEVCDYIIDSVSSILESANISYVKWDMNRNITNIPEGLANDQRFEFHHRYMLGLYRVL
                     DHLTKRFPDILFESCAGGGGRNDLGIMYYMPQAWASDDTDAIERLSIQEGTSLIYPTS
                     SIGAHVSAVPNHQVGRITPLATRGNVAMMGGAFGYELDLTKLSEKELDEISQQIETYH
                     SIRETIQFGQLYRLKKTSNTWAANYVSQDKNQAVFTFVKILAKPEAPLLHVRLKGLDP
                     DALYECPQLGETFYGDELLNIGLTMPHVQKDYFSVQYIFNKI"
     gene            8533..9372
                     /locus_tag="U1335_001106"
     CDS             8533..9372
                     /locus_tag="U1335_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM5231593.1"
                     /translation="MNILNIYNEFDSHNFDLNVDHYGAEQCDKGYSFGPTIRDNFVLH
                     FITNGKGKILVDGKTSYLSAGDIFILPKDVSIFYQADDIDPWTYIWVGFSGSRAKDLL
                     NQSQLLENYYLHSNLESPILGYMHQINHVQMHPIPSITELVLIGYLNQLLAALIEEFP
                     SETLIKPETQTKHYVQQAIKMIHNHYAHPIKVSEIADFLALSRSYLYKIFKQETGYSI
                     KDYILQVKMNRSCQLLEDASRSITEIAYSVGYQDPLTFSAAFKNYFHMSPTEFRKTQK
                     NKD"
     gene            complement(9404..10564)
                     /locus_tag="U1335_001107"
     CDS             complement(9404..10564)
                     /locus_tag="U1335_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM5231594.1"
                     /translation="MTQYNFIDSPNRLSQHAEKWKKVEADPELLPLWIADMDFEPLPE
                     IRQVIRDYADHHVFGYPYASDSLYQSIIDWEDRQHGYKIERESILLIEGVVPALTVAI
                     QSLTEEGDAVLINTPVYPPFARTVKLNNRQLVTNSLVEVDGVFRIDFDQLEKDIVENQ
                     VKLYIFCNPHNPGGRVWSKEELLAIGRLCQKHGVILVSDEIHQDLALYGHKHDTFNTV
                     DENFKDFSIILSSATKTFNIAGTKNSFAIIENPSIRKTFAKRQLINNQHEIPTIGLLT
                     TEAAFTYGDEWLKELKVILERNIDFVEEYLTTHTRIKVMKPQGTYLIWLDFSAYELEH
                     AELFDILHCKAKLILNDGLTFGKEGKHHARLNAAAPFDVIEEACQRLGKVFG"
     gene            complement(10566..11657)
                     /locus_tag="U1335_001108"
     CDS             complement(10566..11657)
                     /locus_tag="U1335_001108"
                     /EC_number="2.5.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase"
                     /protein_id="HEM5231595.1"
                     /translation="MTDYKIDTILARTGINNDEKTGALISPIHLSTTYQHPEFGQSTG
                     FDYTRTKNPTRASLEKTLAAIEKADYALVTSSGMAALVLLFNGFPVGSKVVATRDLYG
                     GSFRWFNEQEQLGRFSFTYANTEEDLLAAITDQTDYVFLETPTNPLMVEFDIAKVSAV
                     AHAKGAKVIVDNTFYSPIYQNPLVLGADVVLHSATKYLSGHNDVLAGALMTNDQDLYD
                     KLFYDQNTSGPTLSPLDSYLLMRGLKTLSLRMERATQNAQKIIAYLEKSPAVKQVYYT
                     GKGGMISVKVVDESRIPHILNTLKVFTFAESLGGVESLITYPATQTHADIPAETRHSY
                     GLTDDLLRLSIGIENAEDLIADLKTALEG"
BASE COUNT         3517 a         2491 c         2181 g         3540 t
ORIGIN      
        1 taccattttc gtaattatgt ataaacatgg aatacctttc acttgatacc tcataggtct
       61 gctcatcact tgtgaaattg accagaatga tgaaatcatc ctgttcatca tatttacggt
      121 aggccattac caagctattt ccagtctcca tcacttcata ttttccttca gacatacaag
      181 gatactcttt ccgaagagca attaattttt gataggtata aaaaagcgaa tttttatctg
      241 caagtgcttt ttcaacgttg atgtctttga cagtatctcc caaagccagc caggcttgac
      301 ctgtactgaa gcccgctcct tctgcctctg tccattgcat tggacggcga gcattatcac
      361 gacctttggc atttatagaa gtaatcaatt cctccttggt gaagccattt tcaatccgct
      421 ccgcatacat gcgacgtgtt tcaatatcat ccgcttggct aacatccgta atcggtgtat
      481 taatcatacc gatttcctca ccttggtaga tataaggtgt ccctgacata aaatgaagat
      541 aaatagctaa cattttacca cttagttcac gaaatgcagg tcgatcatca ccgaagcgag
      601 aaatggcacg aggtaaatcg tggttattcc agaaaagtga gttccaacct ttaccaacca
      661 gttcagtctg ccatttggat agaaccttat gcaaacgtgc tggatctagc ggtgccaaat
      721 cccacttttc tttcccttcc tgctgatcaa gtccgacatg ttcaaattgg aaaatcatcg
      781 aaaattcttt tcggtcagga tgtgaatata actgagcatt ttctggattg gcactccagg
      841 tttccccaac agtcactaag tcgtaagcac caaaggtctt ctcatttaat tcctgaataa
      901 gaggatggag agtcggtcca tcagctgtaa ttaatttttc cggttctttt ccaatcaaat
      961 caattacatc tagcctgaaa ccaccgacac ctttttcaat ccaaaaattg atcatatccc
     1021 agatttcttg tttcagagca ggatttttcc agttcaaatc aggttgctta acagagaatt
     1081 ggtggaggta gtatttgttc agatgtggaa catattccca agctgagcct gagaaggttg
     1141 agcgtaattc attcggttca tcggcccaaa cataatagtc ataataggga ttatctggtc
     1201 ctttgagggc ttcttgaaac cagaaatgtt catccgaggt atgattgagc accaaatcca
     1261 tgattatttt gatattgcgc ttatggcctt ctgcaatcaa ttcttccata tcttccatgg
     1321 tcccaaattc tggagcaatt ccttggtaat cactgatgtc gtaaccattg tcatccatgg
     1381 gggactgata aacaggactg agccaaattg catcaatacc tagttcgtaa agataatcta
     1441 atctgctgat aatccctcga atatctccaa ttccatctcc atttgaatct tgaaaactac
     1501 gaggataaat ttggtaaatg acggacttct tccaccaatc tgtcttttgt atttctggca
     1561 tttgattgat cctttctgca caatcttatt taggcaagaa aaagaggtat ccccctcttt
     1621 ctatataatc atattataac tcaattgtgg taatttttcc ctcttcaatt tcaacaattt
     1681 caaaggtttt ttcttttaga tttgctgtta ggcgagcaga caccccagca tcttgattat
     1741 tccagaaaat ttccatactt gtttcatcca gcatcttaac ggagaactct ccgtcgaaag
     1801 ctggacttgt attgcggaat ttaaggagtt tgaacaagga ttgtacaact ggccgttgca
     1861 cttcctgctc aatttcttcc aaatcatagt aatggcgatt gatattgcgg ccttccttac
     1921 ttgattctaa aagttcaata tcattttcac ctgcaagtaa accaacatag taaatctgtg
     1981 gaatacctgg tgcaaaacat tggagaacac gcgctaatag gtaagcttga tcgttattgc
     2041 caagggcaga ataataagta cagttaatct gataaatatc caaattatta taggcttctg
     2101 tactataaat tttcttcaca ttggcacctt gtgcatacaa ggcttcacgc gtctcctctg
     2161 tctcttcatc cgtcagcaaa tccttaacgt ccacaacacc tattccgtca tgtgtatcaa
     2221 gtgttgtaaa ttgcttgcga gggcaaatct ccatccagtg aaccaggcga ttgacatgac
     2281 cagaatacaa agcgtggaga accagcattg gcaaggcaaa atcataaaca taataatcct
     2341 gttccgcaat tttttgctga atggtgtagt gttcatgaat ttctggtaag atttctacat
     2401 cttttggtgc caataactga cgtggaaaat ggagcatttc ccaaatatca ggctccacaa
     2461 agaaacaatt ggttccgatt tttttattgg cataagcaaa ggcgtccaaa cgaatgatcg
     2521 aagcaccatg ttctgccaac tgttccaaat tttcttggat gaaacgacgg gttgtctccg
     2581 ttgtcacatc taaatcaatc tgctgttcat caaaggtaca ccacaccttc tcttcactac
     2641 catcagcaaa tgttgcaatt cgatatggag cacgaggttt acgcttatag atcaaatcaa
     2701 catcttcttg cgttggctca ccatttggcc aaaagttttt atagcgaata aacaaatccg
     2761 cataagctga ttcatctttc ttttcaagaa aatcaaggaa atacggtgac ttagctgaaa
     2821 tatgattgat cataaaatcg aacatcagat aatagtcttt gcttagtact tcaatatctg
     2881 accaatctcc aaatgcagga tctacctttg tataatccat tggtgcaaac ccacggtcac
     2941 ctgatgatgg gaagaatggt agaatgtgaa tacctcccac aacatccttt aatggtccct
     3001 caagaacttt tttcaaatcc ttgagattct tgcctaaact atccgaataa gtaatcaaca
     3061 tagcttgatt tttaattttc atagattttc tcctttgtaa gccttttctt ttttattttt
     3121 tagaaaaggt tgaacaagtc aacctttaga tttatttgac tgaaccactc gtcatacctg
     3181 aaataatatg tttttggaag atgaggtaaa caagtaagat tgggataatt cctacaacgt
     3241 aagatgcaaa tgatgggcca tagtcactaa aatacatacc ttggtaattg tattggaaaa
     3301 gaggtaaagt ccacatgctt tgatcacgat tcaaaaccaa gagcggtaag agaaaatcgt
     3361 tccagaccca gagggcattg ataatcaaaa ccgtagcatg catgggtttc atgagtggga
     3421 aaatgatttt ccagtacatg gtaaatttat cacagccatc aatagctgcc gcttcatcca
     3481 tttcctcagg tacaatggtc tttatatagc cgacatagag gaagagagcc tgtggaaccg
     3541 cataagttaa gtacaagata atcagaccga caatgttgtt caaaccaagg cttgacatta
     3601 atttggtcat tgggagcata atcacttgga aaggtacaaa aatcccaata atcaagaaaa
     3661 agtagataaa gttaaacact gtctggcgtt tcatttgacg agctacggcg aaagctgcca
     3721 ttggaataac aagtagaatc aagccaacag ctacaatcgt aatcaaggca gaattgccaa
     3781 aatattgtac aaccccatca ttaaacaagc gttcgtagtt atttaaggtg aaattttcag
     3841 gaagaccaaa gaagttgctg gtaatttcct tggttggttt gaatgagctg ataatggtca
     3901 cgagtagcgg aataaacatg aacaatatcc cactaaagag aactaagtaa acccaccaat
     3961 ttttctgttt ttgagtattc atgtctgtcc tcctaaattt caaatttctt cgaaattctc
     4021 atctgaatca atgagatgac aataatgaag atgaagagta ctacagccaa agcattggca
     4081 taagagaatt tgttgtctac aaaggcatag ttgtaaacga gtaaacccaa ggattctgtt
     4141 tttccatctg ggccaccact tgtcagtgca aagataaggt caaatgctgt caaacctgac
     4201 ttcattgcca agatgaaaac catactgata gatggtaata agaatggaag ttcaatattg
     4261 aagaattgtt gagagcgtgt tgcaccatcg attgcagctg cttctttcac atcttctgga
     4321 atactttgta agccagacag gaagatgatg actggcatag ccaatccttg ccagagagcc
     4381 acaaagagta cggctggaat tacagtattt tcttgtacca ataagttttc catcaaccaa
     4441 tcgatatgaa ggatttctcc aatctgtgta aaaccatagt tgaacaattg aacaaaaatc
     4501 aagcctaaag tgactgtgga tagcactgct gggaagaaat accatgttct aaagaaacca
     4561 accgccttaa tcttacgatt gaggagacta gccaaccaaa tccctataac aatttctcca
     4621 atgaccaaac caatggtgaa gataatggta aaagtcatag acgtataaaa atcaggattc
     4681 ttcaagatat ctagatagtt ttgaatgcca atcaagctga aatctgatgt caatccattc
     4741 caatccgtca agctataata gatacctgta aatagaggat agaagaaaaa gattaactgt
     4801 aagccaattg gtatggcaac aaatagatag ggccaatatt tggcaataaa acctttttga
     4861 ttcatcatgg tactcctttt ttctaaaatg tatagttact tagggtcagt ttgaatggag
     4921 tggttaggag ggattcaaac tgaccctaag caactataaa gaagagctag gctgttctag
     4981 ccctccttat agttttcttg aattattttt tcattggatc aaagaatgca ttcaatttct
     5041 tcacaagttc gcctgaattt ggatttttca ctgcttctac tgtaatattc cagaattctt
     5101 cttctgattc ccattcagat tgcaaccaaa ctacgtgttt gtcagtgaag gcgtattgcg
     5161 tcactccagc agtttcttca aacttgcctt ctgtatctac accttcaact gaagttggtg
     5221 agccatctac atcatagtat ttctggataa cttctggacg agagaggtat tctaggaatt
     5281 ttttagactc ttctgggtgc tctgtatctg ctgaaataga tagagcaagg tctgctgcac
     5341 cgatagtata gtcgccacct tctttatcac cagggaaagt aaacataccg tatttaaatt
     5401 ctggttcttg ttggtttaca gctgtagctg cccatgtacc ttgtggaagc atgagagcat
     5461 cacctgctgc aaaggctgcc accgcatctg catagagcgc gccagttgcc cctttttgtc
     5521 cattatctgt caacagttgt aagcgttcta gaactgcttt tgttgtagca tcatcttgaa
     5581 ttgctccctt tgcactgcga atcagaatat cttcagcacc atcaaatcca cccgcaacag
     5641 tgacccaagc taactgatgg tagccgttca aggaccaagc atcgttcaat gaaagagcaa
     5701 acggtgctgc actgccatca gccttgattt tgtctaccaa agccacaaat tctgcatagg
     5761 tagttggaac ttcaagaccc agttctttga atttgtcttt gttatagtag ataccatagg
     5821 cattagctgt caatggaaga gtatagtttt tctcgttaac aagataaggc gttacagcac
     5881 catcttttag atgactgaga cctgcatcat caccaatttc taggaaacgt ccatccgccg
     5941 catatgcttt gaagtccgca ttttgtggat aaatgttaat cacatctggc gcttcattgt
     6001 tggccatacg ggttttcaaa acagttcctg catctggtac atttgaaaat ttaacatcaa
     6061 tcgtaggatt ttctttttca aattcatcaa taatttcctg tagagttgct tgcatttctg
     6121 gtttttgtga gaaatattca atctcaacct tatcactacc accacttgca ttcccacaag
     6181 caaccaagaa gctggcaaaa gcacaaactg acgcacattt taaaaatgtt ttcattttca
     6241 ttataaaatc ctcctagatt ttgttaaaaa tatattgtac actaaaataa tctttttgaa
     6301 catgtggcat tgtaagacca atgttcagca gttcatcccc gtagaatgtt tctcccaatt
     6361 gagggcattc atacaaggca tccgggtcta gccccttcaa ccgaacatga agcaaaggcg
     6421 cttctggctt agcaagaatt tttacaaatg taaagaccgc ttgattctta tcttgactaa
     6481 cataattggc agcccaggta ttgctcgtct ttttcagacg gtagagctga ccgaattgga
     6541 tagtttcacg aatggagtga taggtttcga tctgctgact gatttcatcc aattcctttt
     6601 ccgaaagttt cgttaaatcc agctcgtaac caaacgctcc tcccatcata gctacattac
     6661 ctcgtgtagc aaggggcgta atacgaccaa cttgatgatt tggtacagct gacacatgtg
     6721 ctccgataga agaagtagga taaatcaaac tggtaccttc ttgaatagat aagcgctcaa
     6781 tcgcatctgt atcatcactt gcccaagctt gtggcatgta atacatgatt cccaaatcat
     6841 tacgacctcc accgcctgca caggattcga aaagaatatc tgggaaccgc tttgtaaggt
     6901 ggtctaatac acggtagaga cctagcatgt aacgatggtg gaactcaaag cgctggtcat
     6961 ttgctaaacc ttcagggata ttggtgatat tacggttcat atcccatttt acataagaaa
     7021 tattggctga ttctaatatg gaagagacgc tatcaatgat gtagtcacag acttcctgct
     7081 tggtcaaatc caaaactaat tgttctcggc tgtagattgg taagcgtcct tctgtgcgaa
     7141 ttgcccaatc aggatgctca cgataaagat cgctatcaat agaaatcatc tctggttcaa
     7201 accacagtcc aaatttcatg ccaagctcat ttattcggtc tgctaaacca ttcaaaccat
     7261 ttggcaactt atccaaattg actttccaat cgcccaatga actttcatca ttgtttcgtt
     7321 taccaaacca accatcatcc agaacaaaca attcaatacc agctcgactt gcaacctgag
     7381 ctaactgtaa aatcttttct tctgtaaatt caaaataggt tgcttcccag ttgttgatta
     7441 aaatgggtct tggtttgttt acaaacgatg atcgaatgag gtgttttgtg ataaagtgat
     7501 gactattttg tgtcatgcca gtaaatcctt tatcagtgta tgataagaga acttctggag
     7561 tttgaaaccg gtcatcctta tccaattgcc atgagaaata gtgactttcc aatcctagtc
     7621 ccaaacgact ggtttccatg gctgtcgttt cgacaaatgc tgtaaagttg ccactataga
     7681 caaggtgggc cgcataaaca tcgcccttgt cctcacttgc atcgggtgaa gctagtgcta
     7741 agaagggtgt tcttgagtga cttgaagcac ctcgaatgct accaatcgaa tactgacctt
     7801 ttgtcaatgg ggtctgtgtc cactcttttt cataggcata acgtcctgcc aagctgtgaa
     7861 caatgaaatc ttgatgtgga aaatcaagcg ttgcagacaa gaccttctct agtttgcatg
     7921 gatatttgcc agtttgaatt gtagctgacc gtgcgagata ggaagcttct tcaaaaacag
     7981 aatactgaag tgttacggta atatctgtca actgatcgta aagatcaatt tcaagactct
     8041 ctacctcttc ttgatttcca aaacttgctg gtaatcccct cagttctttt ttccccttgt
     8101 ataatcgata ctctttgtat tttaggtcaa gagtgactcc aaattcgttc ctaacatcta
     8161 atgctgaggt tctaaaatct cccagaccat tgctggaata ttcgagtggg aggacatcca
     8221 atgagtatgt cctatcccca gtaattggac tcggagaaaa cgatcgatct aaatatgtta
     8281 ttttgtttcc atcgctaaat ttttcgattt ttttcccaaa ataacgatga accagatcgc
     8341 ctgtttccaa cacttggatg atataagaga attctcttgt tttcaggtga aaaatctgtt
     8401 tttcattata aatctcaatc acattcatct ctcccatctc ttctttatgc tattatttta
     8461 caaaatgaaa acgctttact taataatctt ttgtttttaa aacatggtat aatgtttcct
     8521 aggaggattg aaatgaatat tctgaatatc tataatgaat ttgatagtca taattttgac
     8581 ttaaacgttg accattacgg tgccgaacaa tgtgacaagg gctattcctt cggtcctact
     8641 atccgtgata attttgtcct gcattttatt acaaatggaa aagggaagat tcttgtagac
     8701 ggtaagacta gctatctttc tgccggggat atatttattc ttccaaagga tgtttccatt
     8761 ttctatcaag ctgatgatat agacccgtgg acctatatat gggttggttt tagtggttca
     8821 cgagcaaaag acctacttaa tcaaagtcaa ctgctagaaa actactacct ccactccaat
     8881 ctagagtcac caattctagg ctacatgcat cagattaacc atgttcagat gcatcccatc
     8941 ccctctatca cagaattggt cttaattggc tacctcaacc aactcttagc agcactcata
     9001 gaggaatttc ccagcgaaac attaattaag cctgaaacac aaaccaagca ctatgttcag
     9061 caagccatca agatgatcca taaccactat gcccatccaa ttaaagtttc tgaaatagca
     9121 gattttctag ctttaagccg aagctatctc tataaaattt ttaagcagga aactggctat
     9181 tctatcaaag attatatttt acaagtaaaa atgaatcgtt cttgtcaact attagaagat
     9241 gcttctcgga gtatcactga aatcgcctat tctgtcggat accaagaccc tctcaccttc
     9301 agcgcggcct tcaaaaatta tttccatatg agcccgacag aatttagaaa aacacaaaaa
     9361 aataaggatt aggtgagttt agtcacacct agtccttatt tctttatcca aaaaccttac
     9421 caagtcgctg acaggcttct tcaatgacat caaatggagc tgccgcattt agacgtgcat
     9481 gatgcttacc ttccttacca aaggtcaaac catcattcaa aatcaacttc gctttacaat
     9541 gaagaatatc aaagagctct gcatgctcta attcataggc agaaaaatca agccagatga
     9601 ggtaggttcc ctggggcttc atgaccttga tccttgtatg ggttgtcaaa tactcctcaa
     9661 caaagtctat atttctctcc aaaataacct tcaactcctt caaccactca tctccataag
     9721 tgaaagcagc ttctgtggtt aacaagccaa tcgttggaat ctcgtgctga ttatttatca
     9781 attgacgctt agcgaatgtc ttgcgaatgc ttggattttc aatgattgca aagctatttt
     9841 ttgtaccagc gatattgaag gtcttggtcg cagatgataa gataattgaa aaatctttga
     9901 aattttcatc caccgtatta aaggtatcat gtttgtgacc atataaagcc aaatcttgat
     9961 gaatttcatc tgagacaaga atgacgccat gtttctgaca gagacgacca atagctaaga
    10021 gttcttcctt gctccaaacc ctaccacctg gattgtgggg attacagaaa atatagagtt
    10081 tcacttgatt ctctacaata tccttttcaa gctggtcaaa atcaatccta aaaacaccat
    10141 ccacttcaac aagtgaattg gtaacaagct ggcgattgtt taattttaca gtccgcgcaa
    10201 agggtggata gacaggtgta ttaattagga ctgcatcccc ttcttctgtc aaagattgaa
    10261 tagccacagt taaggcagga acaacacctt cgatgagcag gatggactct ctttcaatct
    10321 tatagccatg ctgtctatct tcccagtcaa taatagactg atagaggctg tcactagcat
    10381 aaggataacc aaaaacatga tgatctgcgt agtcacggat aacttggcga atttctggta
    10441 gaggctcaaa gtccatatct gctatccaca agggtaagag ttcaggatca gcctccactt
    10501 ttttccattt ttccgcatgc tgggataggc gattcggact atctataaaa ttatactggg
    10561 tcatattatc cctccaaggc tgttttcaaa tctgcaatca agtcttccgc attctctata
    10621 ccaatagaca gacgaagcaa atcatctgtc aaaccgtaag aatgacgggt ttcagctgga
    10681 atgtctgcgt gggtctgagt ggctggatag gtaatcagac tctctactcc acccagactt
    10741 tcagcaaagg taaagacttt cagggtgttg agaatatggg gaatccgact ttcatctacc
    10801 accttaaccg aaatcatccc accttttcct gtatagtaaa cttgcttgac tgctggactc
    10861 ttctccaaat aggcaataat tttctgagca ttttgtgtcg cccgctccat tcgaagcgag
    10921 agggttttga gtccacgcat gagtaagtaa gaatccagtg gagatagagt tggacccgat
    10981 gtattttggt cataaaagag cttatcatat aggtcttgat cattggtcat caaagcgcca
    11041 gctagtacat cattatgccc agataggtac ttggttgctg aatgtaggac aacgtccgct
    11101 cctagaacaa gtggattttg gtagataggg ctgtaaaaag tgttatcgac aatcacctta
    11161 gcacctttgg catgggcgac agccgaaacc ttagcaatat caaactcaac cataagggga
    11221 ttggtaggtg tttccaggaa aacatagtcc gtctgatcag tgatggcagc caacaagtcc
    11281 tcctctgtgt tagcataggt gaaactaaag cgccccaact gctcctgctc gttgaaccag
    11341 cggaaagagc cgccgtagag gtcacgcgtc gcaaccacct tacttccaac tgggaaaccg
    11401 ttaaagagca agaccaaagc agccatgccc gagctggtca ctagggcata gtcagccttt
    11461 tcaatggcag ctaaggtttt ctccaagcta gctctggtag gatttttggt ccgtgtgtag
    11521 tcgaagcctg ttgattgacc aaattctgga tgctggtaag tagtcgaaag gtggataggg
    11581 gaaatcaagg cccctgtttt ctcatcattg ttaatccctg ttcgagctaa tatcgtatca
    11641 atcttataat ctgtcataac atctactcca atctaactta caatatagtc tagcatgaaa
    11701 taggagattt ggtgtgaaaa atatccaaa
//
LOCUS       DASGAC010000053        11302 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.053, whole genome shotgun sequence.
ACCESSION   DASGAC010000053 DASGAC010000000
VERSION     DASGAC010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11302
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.053"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            46..1221
                     /gene="secY2"
                     /locus_tag="U1335_001109"
     CDS             46..1221
                     /gene="secY2"
                     /locus_tag="U1335_001109"
                     /inference="COORDINATES: protein motif:HMM:TIGR02920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system protein translocase subunit
                     SecY2"
                     /protein_id="HEM5231596.1"
                     /translation="MIIMIFLAGRYIPVPLVELAPYLSDLDLSSLPWYQIPSSSLTVF
                     SIFALGLGPWMYATILISLFSIGSKQVAVSPRVGELRKNSLMFVLALIQGLGVAITLN
                     YGESVKASIIDDIFFVTLVMIAGAYVVSWFANMNTAYGLGGTSLIILINIIVGQFTTF
                     PLFFELFQSGLALVGFLLLGWIVFALYLSVVLDQAEYRIPIQRIAIKSDLMKEAYMPI
                     KLNIAGGMPFMYAYTLLGFPQYIFLLLSFLVPKYGPFFQVLGSYFVLTRWEGIVFFLA
                     ILALLTVAFSFTTINPTDKSKEMRKSGDYIPFVRPGQPTKDYLTAIVLRIATINAIFL
                     MCMAGIPMLASLGNPDIQPVAGLPGIIMMVVGIVLTTIKEVRVARLKKRYSSLFTIE"
     gene            1230..2768
                     /gene="asp1"
                     /locus_tag="U1335_001110"
     CDS             1230..2768
                     /gene="asp1"
                     /locus_tag="U1335_001110"
                     /inference="COORDINATES: protein motif:HMM:TIGR03713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system protein Asp1"
                     /protein_id="HEM5231597.1"
                     /translation="MKHYFIPSWYPEHRTWYDNTSSWYNMWATARFDDTINQLRMFET
                     AGEENQLLVLNYMPNLRYYKHRYDLFEVDTWSVFDQLQGIGDFQGSVIDYLDFDWPKG
                     IEFVNSPFLVMAFLNGERYAQIEFGESGQVIWFDFFQQGSLTKKLVFDDRGFISSIVY
                     YENGQSLHQDYLGLDGQWRVREYFDNGRVEVNQHLAKSISEQQIYENMEELVQERLSY
                     YLKSDIEPATIFLAASPKHHDLVMQSKGKQKVVLSFFRERYPLDTIAQNISLLVTANL
                     VITDSKKTADLLSSYNLVPVQHQSLFDTRLALGKSQRLQELYIYFLIDGLSVESLTSY
                     LEFIFNAMERNEDIYLSLVSYQTNHQEVDALKQTIDELLDARPEPYLFLEKENTRMFE
                     FGDKETHDSRVSLSFYHSENEIIQSLESIRLIIDLADEPDLYTQIAGISSGIPQINRI
                     ESEFVEHLKNGFILSKESDLEEAIDYYLSGLANWNKSLIHSVQKISEYTSGVLVEKVK
                     EKIN"
     gene            2768..4468
                     /gene="asp2"
                     /locus_tag="U1335_001111"
     CDS             2768..4468
                     /gene="asp2"
                     /locus_tag="U1335_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system protein Asp2"
                     /protein_id="HEM5231598.1"
                     /translation="MAKKIPILQIGGQNWQTEQSLSDKLEWHYYSFERIEELLSELDQ
                     IQSEQIQLKTLRQEREEVLTTLFDEELDEQAKVELEEFLRTSKSFKELEKEIKRLQKK
                     IDTSLKFSALVLSDDTYPESIMPILDLFKVYEIFYPQGSHATGWLQEELRKRMAQSYD
                     ATKKSEFAHTLSQGLFVGQYGAKVHIDDLEVSPNFAGTIQMKGRKKLILEGEFEPDYR
                     QIAFFRFNVKYNADQFLNLFLEHETSSECSLQMSVRLIPDGATDHIVKEWKIEGEELR
                     NQVVIDAEISGYLFISILAKGSGRIEIGDLHYRFSRNGLGEFILGGERIVDENLQEVF
                     TYFEPADFKPPLCVYFSGFRTAEGFEGFWMMKSMKTPFMLICDPRLDGGAFYLGSKEL
                     EDKIQQKIQDKLDFLGFDSSQLILSGMSMGTFGASYYGAKLKPHGIVVSTPLLSLGDM
                     ALAEHLNRPGGFPTSLDLLHSNYHSMDTEAAEKLNNRFWDLMEPNVYESTKFAVAYMK
                     EDDYDSTAFEKLVRTSRETGARILGRGYSGRHLDGSDVTSSWFIKQYRDMLKKDFNRE
                     "
     gene            4474..5430
                     /gene="asp3"
                     /locus_tag="U1335_001112"
     CDS             4474..5430
                     /gene="asp3"
                     /locus_tag="U1335_001112"
                     /inference="COORDINATES: protein motif:HMM:NF026770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system protein Asp3"
                     /protein_id="HEM5231599.1"
                     /translation="MRVVIKWKHFAQEMYSHGSKVDFQKQIISFDNPLMPPSFEIKRW
                     YSRTNFQAKRQTPTLPILNRGEKYRLIVNAESYPENSFYIRVVFFNRFGKQVGFKILK
                     TKDATFTYPKDAYSYDIALLNAGCEKLEFQSMVLKSIDDTADLFTLSAEKQNPSSDAK
                     VNLVFVEESEDLIYEKSMFSEVINRLGDVVFIADTDGELSMLNQETEKFILDLIHNQG
                     EDGVNFFSYGPKGNFATRYYCEKLKQGQVFSGQEFYDASTYHTLLSHQGMSVNHVEEL
                     IKMGIGDHLNQLPNRDLAIVSSLVHPLRLLVQQFLEKDGHKK"
     gene            5427..7811
                     /gene="secA2"
                     /locus_tag="U1335_001113"
     CDS             5427..7811
                     /gene="secA2"
                     /locus_tag="U1335_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system translocase SecA2"
                     /protein_id="HEM5231600.1"
                     /translation="MKRLKQFFSMDYYRLKRLDKIFTEIDSLKEKMARLTDDEMRGKT
                     QEFKDRLAAGATLDDLLVEAYALVREADKRVLGMFPYKVQVMGAIVLHEGNIAEMKTG
                     EGKTLTATMPLYLNALEGKGAMLITTSGYLAQRDAEEMGEVYKFLGLTVSCGVGEADG
                     KDKASSPDKKAIYAADITYTTNSALGFDYLFENLATSKGGKYLRPFHYAIIDEADAVL
                     LDAAQTPLIVSGSPRVQSNLYAIADQFIVSLKEGEGYYYNRENGEVWLTQAGIDEAER
                     YFNAQEFFDIDHAELVRHVVLALQAHKCYTLGKNYVVQDNKVQLLDKTDGRVLSGTRI
                     QGGVHQAIEQKEGVKITPETRSIASVTYQNLFLMFNKLSGMTGTGKTAESEFIETYNM
                     EVVQIPTNKPVIRKDYPDKIYTTMPEKIQASLDLVKKIHATGQPILLVTGSVNMSELY
                     SELLLLEGIPHSLLNAYNAAKEAQMVAEAGQLGTVTVATNMAGRGTDIKLGPGVKELG
                     GLAVIGTERMKSQRMDLQMRGRSGRQGDPGFSQFFACLEDDLLIENGGKWIQTYFENN
                     KDKIDPRKPEELTGRRFKKALRHAQEASDGSGRSSRSMTLQFDESVKLQREYVYRERN
                     AIIEGTNKALDILQFAKEDIVLYLKKHPVLDAHDLERYILDHITYDFHSFPEHLELQN
                     HSQVQAFLLNIIKQEVDHKKEFLSKDYSQFERIAVLKAIDECWVEEVDYLQQLRVIAG
                     ARQAAQRNPVFEYHQEAYKGYQKMKEEIRRNILQNILLSDVSYTEKGDMQVYFV"
     gene            7827..9332
                     /gene="gtfA"
                     /locus_tag="U1335_001114"
     CDS             7827..9332
                     /gene="gtfA"
                     /locus_tag="U1335_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system glycosyltransferase GtfA"
                     /protein_id="HEM5231601.1"
                     /translation="MTVYNINLGIGWASSGVEYAQAYRAQLLRRKGIKTKFIFTDFFG
                     QDNISDMTRNIGFKDEEVIWLYTFFTDQKVAPTTYTLDQLRQDVTGTITREERDGKIV
                     RFFYEEQNFFLTAYLCQEDKDIVHRVEYVSSGNLIRKDFFTYMRSFSEYYTPRDSKAH
                     LYLRRFFNEDGSVAYEEVIDGNKSIYRMPDALISSKEEWIAYFMQNLGLTSQDIVILD
                     RATGTGQAVFANKGPARLGVVIHAEHYSLNQVTDQTILWNNYYDYQFVHADCVDFFIT
                     STKRQKEVLEEQFEKYVGKVPLIVDIPVGSIDYVRRAEMRRPYSIITASRLATEKHVD
                     WLTKAVVAAKEDLPELTFDIYGSGGEHAKIEAIIKEHQAEGYIHLKGHHDLTEVYQDY
                     ELYLTASKSEGFGLTLLEAIGAGLPLIGFDAPYGNQTFIQEGRNGYLLPFPTVEDEQE
                     IVSQYRQAIRSFFSREDRQEMQEASYQVASAFLTHEIEKKWVELVEEMVGR"
     gene            9329..10654
                     /gene="gtfB"
                     /locus_tag="U1335_001115"
     CDS             9329..10654
                     /gene="gtfB"
                     /locus_tag="U1335_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011680794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system glycosylation chaperone
                     GtfB"
                     /protein_id="HEM5231602.1"
                     /translation="MIHLFDTYQQSSWDLHFSLICSGYNNPTIVLNDDGFLPHDVTSP
                     FRYFTEYDAVQGQALYFNQVKTPAFWEIRGDGSQAAIYDYATKRAQIHYAQPSHMRLV
                     KAVDWYDEAGKIVVTDRYNDKGMRFAQTSYDSQGQAMQTSYYKEDGQEVLIENHGTGD
                     WILNHQNQIHFFKNKHAFYTYYLKTAGFNLDRIFYNHLGQPFLTAFYLDEDGEDILFW
                     QEPIRDSIPGNMLLLLNKQSRRPTKIVVQDKEAYDNLMALASPEQQKNIAYLGFLYPF
                     KEQTEFKPEALILTNSDQIEQLEHLVTSLPQLHFHIGAITEMSSHLMTFGNYENVTLY
                     PNIAMDLVQQLYQRTSLYLDINHGNEILSSVRTAFEYRQLILGFTETLHAATYVAREN
                     RYASSQVEVMIAKIKSLLAGQSDEQSRLLSCQDKEANLTTIADYQRVVN"
     gene            10663..10842
                     /locus_tag="U1335_001116"
     CDS             10663..10842
                     /locus_tag="U1335_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231603.1"
                     /translation="MKHEHPLKESIDQRLEEERYVIPKKRKEKKRFNFQLIVTISILI
                     SLGLIVLQIIQFFFK"
BASE COUNT         3490 a         2078 c         2494 g         3240 t
ORIGIN      
        1 ttatttttga aacatcccat aattaatcaa atagcagtga gtagtttgat tatcatgata
       61 tttttggctg gtcgctatat accagttcca ttggttgaac tagcaccata tttatcggac
      121 ctagatctaa gctcccttcc ttggtatcaa atcccgtcca gtagcttgac cgtgttttca
      181 atctttgcac tggggctagg tccgtggatg tatgcgacga tattgatttc tttattttcc
      241 attggaagta agcaggttgc agtttcgcca cgagtcggcg aattgagaaa gaatagctta
      301 atgtttgtgt tggctctgat acagggattg ggcgtagcga ttaccttaaa ttatggagaa
      361 tctgttaagg cctccattat agatgacatt tttttcgtaa cccttgtcat gattgcgggg
      421 gcctatgttg ttagttggtt cgcgaatatg aataccgcat atggactagg aggaacctcc
      481 ctgatcatcc tgattaacat tattgttggt caatttacga catttccgtt gttttttgaa
      541 ttgtttcaaa gtggtctagc cttagttggc tttttgttat tagggtggat tgttttcgct
      601 ctttacttga gtgtcgtctt ggatcaagca gaatatcgaa ttccgatcca acgaatcgct
      661 atcaaaagcg atttgatgaa agaagcctat atgccaatca agctaaatat tgcagggggt
      721 atgccattta tgtatgccta tactttgttg ggctttcctc aatatatctt tctactcttg
      781 tccttcttgg ttcctaaata cggtcccttc tttcaagtac tgggaagtta ttttgtgctg
      841 acaaggtggg aaggaattgt atttttcctt gccatattgg cgcttttgac agttgcattt
      901 tcctttacaa caataaaccc aactgacaaa tcaaaggaga tgcggaagtc aggtgactat
      961 attccttttg taagaccagg acaaccgacc aaggattacc taacagccat tgttctcaga
     1021 attgctacga ttaatgcgat tttcctaatg tgtatggctg gcattccgat gttggctagt
     1081 cttgggaatc cagatattca gccggttgca ggtcttccag ggattatcat gatggtggtt
     1141 ggtattgtac tgacaaccat caaagaagtg agagtagcga gattgaagaa gcgatatagt
     1201 tcgttattca caattgagta ggagaaagta tgaagcatta ttttattccg tcatggtacc
     1261 cagaacatcg gacttggtat gataatacta gtagctggta taacatgtgg gcaacggcac
     1321 gttttgatga tacgatcaat caactcagga tgtttgaaac tgcaggtgag gagaatcaat
     1381 tattggttct taattatatg ccgaatttac gttactacaa acaccgttat gatctatttg
     1441 aagttgatac ctggtctgta tttgatcagt tgcaaggaat aggagatttc caaggttcgg
     1501 tgattgatta tctggatttc gattggccaa agggaatcga atttgtaaac agccctttct
     1561 tggtcatggc gttcttaaat ggagaacggt atgcccaaat cgaatttggc gaatctggtc
     1621 aggttatctg gttcgatttc tttcagcaag gttccctaac caagaaacta gtatttgatg
     1681 accgtggatt tatttctagt atcgtatatt atgaaaacgg tcagtcttta catcaagact
     1741 atctgggatt agatgggcag tggagggtgc gagaatattt tgataacggt cgtgtagaag
     1801 taaatcaaca tctggctaaa tcgatttctg aacagcaaat atatgaaaat atggaagagc
     1861 tagttcagga aagattgagt tattacttaa aaagcgacat tgagcctgcc accatctttt
     1921 tagcagcgtc tcccaaacat catgacttgg tgatgcagtc taaggggaaa caaaaagttg
     1981 tcttgtcgtt ctttagagaa cgctaccctc tggatactat tgcccaaaat atctcactgt
     2041 tagtgacggc aaatctggtg attacagata gcaaaaaaac agctgattta ctatcatcct
     2101 ataatctcgt tccagttcaa caccagtcct tatttgatac tcgattggca ctaggtaaga
     2161 gccagagatt gcaggaactc tatatttatt tcttaataga tggtctttcg gttgaaagtc
     2221 tgacaagcta tctagaattt atttttaatg cgatggaacg gaacgaagat atctatttgt
     2281 cgctcgtttc ttatcagacg aatcaccaag aagttgatgc attaaaacag acgattgatg
     2341 aactattgga tgcccgtcca gaaccatatc tattcttgga aaaagaaaat acacggatgt
     2401 ttgaatttgg tgataaggag acacacgata gtcgtgtcag tttgtctttt taccacagtg
     2461 aaaacgagat tattcagtca ttagaaagta ttcgcttaat tattgattta gcagatgaac
     2521 ctgatttgta tacccaaata gcaggtatta gttcagggat tcctcagatc aatcgaatag
     2581 aatctgaatt tgttgagcat ttgaaaaatg gctttatttt atcaaaagaa agtgacttag
     2641 aagaagcgat agactattat ttatctggac tagccaattg gaataagtct ctcattcact
     2701 ctgttcagaa aatttcagaa tacacaagtg gcgtcctcgt agaaaaagtg aaagaaaaaa
     2761 taaattaatg gcaaaaaaaa tacctatttt acagatcggt ggacagaatt ggcagactga
     2821 acaaagtctg tcagacaagt tggaatggca ctattattct tttgaacgta tagaggaatt
     2881 gctatcagaa cttgaccaga ttcagtctga acaaatccag ttaaaaacat tacggcagga
     2941 aagagaagaa gtcctgacga ccttgtttga tgaagagtta gatgaacaag caaaagtaga
     3001 actagaggaa ttcttgagaa cgagtaaatc ctttaaagaa ctggaaaaag aaatcaaacg
     3061 cttgcagaaa aaaatcgata ctagtttaaa attttctgcc ctagttctat cagacgatac
     3121 ctatccagaa agtatcatgc cgattttgga cttgtttaag gtgtatgaaa tattctatcc
     3181 tcaaggttcg catgcaacag gctggttaca agaagagcta agaaaacgga tggctcaatc
     3241 ctatgatgcg actaagaagt cagaatttgc ccatacctta tcccaaggtc tatttgtggg
     3301 tcagtatgga gcaaaagtcc atatagatga cttagaggtc tctccaaatt ttgcagggac
     3361 tatacaaatg aaagggcgga aaaagttgat tttggaaggt gagtttgagc ccgactatcg
     3421 acagatagcc ttctttcgct ttaatgttaa atataatgcc gatcaattct taaacttgtt
     3481 tttagaacat gaaacatcat ccgaatgttc ccttcagatg tcagtccgat tgattcctga
     3541 tggagctaca gatcacattg tgaaggaatg gaaaattgaa ggggaggaac taagaaatca
     3601 agttgtgatt gatgctgaaa taagtggcta cttgtttatc tccattttgg caaaagggag
     3661 tggacgaata gagattggag accttcatta ccgcttttct agaaatgggc ttggggagtt
     3721 tatcttagga ggtgagcgta ttgtagatga gaatctacaa gaagttttca cttatttcga
     3781 acctgctgac tttaaaccgc ctctttgcgt ctacttctcg ggtttccgta ctgcggaagg
     3841 ttttgagggg ttctggatga tgaaaagtat gaaaactcct tttatgctca tctgtgatcc
     3901 gagattagat ggtggagctt tctatttagg aagtaaggag ttagaagata aaatccaaca
     3961 gaaaatacaa gataaattgg actttttagg atttgattcc agtcaactaa ttctttcagg
     4021 aatgtctatg ggaactttcg gagcttccta ctatggtgcc aaactgaagc ctcatggcat
     4081 tgttgttagc accccccttc taagtctagg cgatatggct cttgcagaac acttaaatag
     4141 accaggtggc ttcccgacct cccttgattt gttacattcg aactatcatt caatggatac
     4201 tgaagctgct gagaaattaa ataatcgctt ttgggatttg atggagccaa acgtctatga
     4261 atcgaccaaa tttgcagtcg cctatatgaa agaagatgat tacgattcaa cagcctttga
     4321 aaaattagtt cgtacgagta gagagaccgg ggcacggatt ctaggaagag gctattcagg
     4381 tcgtcacttg gatggaagcg atgtgacatc gagctggttc ataaaacagt accgcgatat
     4441 gctcaaaaaa gattttaata gggagtaaaa agtgtgcgag tagtaataaa atggaagcat
     4501 tttgctcaag aaatgtattc ccatggtagc aaagtggatt ttcagaaaca gattatttcc
     4561 tttgacaacc ccttgatgcc accaagtttc gaaatcaagc gatggtattc taggacgaat
     4621 tttcaggcta aacgccaaac cccaacactg cccattctga acagagggga gaagtatcgg
     4681 ctgattgtaa atgctgaatc ttatccggaa aacagttttt atattcgtgt cgtatttttt
     4741 aatcgttttg ggaagcaagt aggctttaaa atcttgaaaa ccaaggatgc aacgtttacc
     4801 tatcccaaag atgcttattc gtatgatatt gccttattga atgcgggatg tgagaagttg
     4861 gagtttcaat ccatggtgtt aaaatcgata gatgatacgg cagacttgtt cactctatca
     4921 gctgaaaaac aaaatcctag ttctgatgct aaagtgaatc ttgttttcgt tgaagaatca
     4981 gaagatttaa tctatgagaa gtccatgttt tccgaagtaa taaacagatt gggcgatgtt
     5041 gtttttatcg cggacacaga tggagaatta tccatgctga atcaagaaac agaaaagttt
     5101 attcttgatt tgattcataa ccaaggtgag gatggggtaa acttcttttc ttatggacca
     5161 aaagggaatt ttgcgacgcg ctactattgt gaaaaactga agcaaggtca agtgttttca
     5221 ggtcaagagt tttacgacgc ctctacttat catactctcc tgagccatca gggaatgagc
     5281 gtaaaccatg ttgaggaact gataaaaatg ggtataggtg accatttgaa tcaacttcca
     5341 aatcgtgact tagcaatcgt ttcttccttg gttcatcccc tacgtctgct tgtccaacaa
     5401 tttttagaga aggatggtca taaaaaatga agagactgaa acagtttttc tccatggatt
     5461 attatcgctt aaaacgattg gataaaattt tcactgagat tgatagcttg aaagagaaga
     5521 tggctcgttt gacagatgat gagatgcgcg ggaaaacgca ggaatttaag gatagactgg
     5581 cagctggtgc tactctcgac gatcttctgg tagaagctta tgcattggtc agggaagcag
     5641 ataagcgcgt gttgggaatg tttccgtaca aggtccaagt gatgggagca attgttctcc
     5701 acgaaggaaa tattgctgag atgaagaccg gtgaaggaaa aacattgaca gctacgatgc
     5761 ctctttatct caatgccctt gagggaaaag gtgcgatgct aataaccacc agcggttatt
     5821 tagcacagcg agatgctgaa gaaatgggtg aagtctacaa atttttagga ctaacagttt
     5881 cttgtggagt tggagaagcg gacggaaaag ataaagcgag ttctccggat aaaaaagcta
     5941 tctatgccgc agatattacc tatacaacca acagtgctct tggttttgat tatctttttg
     6001 aaaatttagc aacaagcaag ggtggaaaat atttacgtcc ctttcattat gctatcattg
     6061 acgaagcgga tgctgtctta ttagatgctg cacaaacccc attgattgtc tcgggctctc
     6121 cccgcgtgca gtcaaacctc tatgccattg cagatcagtt cattgtcagt ctaaaagagg
     6181 gagaaggtta ttactacaac cgagaaaatg gtgaagtgtg gctgacacag gcaggcattg
     6241 atgaagccga gcgttatttt aatgctcagg aattttttga catcgaccat gcagaattag
     6301 tgcgtcatgt tgttttagcc ttacaagccc ataaatgtta cacattaggg aaaaactatg
     6361 tcgtgcaaga taacaaggtt caattattgg ataagacaga cggtcgtgtt ctgtcaggaa
     6421 ctcggataca aggtggtgtt catcaggcga tagaacaaaa agagggcgtt aagataacac
     6481 cggaaacgcg ttcgattgct tcagtcacct atcaaaattt attcttaatg ttcaataaac
     6541 tttctggtat gacagggact ggtaaaacag ctgagtcaga atttatagaa acctataata
     6601 tggaggttgt tcagattcca accaataaac cagtcattcg taaagactat cctgataaga
     6661 tttacaccac catgccggag aaaattcaag cttctttgga cctggtgaaa aaaatccatg
     6721 caacaggaca acctattctt ttggtaactg gttcggtcaa tatgtctgaa ctctattccg
     6781 aactcctgtt gctagaaggg attcctcaca gccttctcaa tgcctataat gcagctaaag
     6841 aagcgcagat ggttgcagaa gcaggacagc ttggaacggt tacagtagcg acgaatatgg
     6901 ccggtagagg aacggacatc aaactcggtc caggtgtaaa agaattgggt ggtttggccg
     6961 ttatcggaac ggagcgaatg aagagccagc ggatggactt gcagatgcga ggacgttcag
     7021 gacggcaggg agatccagga tttagccaat ttttcgcctg cttggaagac gatctgttaa
     7081 ttgagaatgg cggcaagtgg attcagactt attttgaaaa caataaagat aagattgacc
     7141 caaggaagcc tgaggaattg accggtagac gatttaaaaa agccttgcga catgcacaag
     7201 aagcgagtga tggttcggga cgctcttcac gaagcatgac cttgcagttt gacgaaagtg
     7261 tcaaattaca acgagaatac gtctatagag aaagaaatgc cattatcgag ggaacaaaca
     7321 aagcactcga tatcctacaa ttcgccaaag aagatatcgt tctgtatctc aaaaagcatc
     7381 ctgttttgga tgcccatgat ttggagcgct atatcttgga ccacatcacc tatgattttc
     7441 atagttttcc agaacattta gaattacaaa atcatagcca agttcaagcc tttttgctga
     7501 atattataaa acaagaagtt gaccataaga aagaattttt atcaaaagac tactcacaat
     7561 tcgaacgaat agctgttttg aaagctattg atgaatgctg ggtagaagaa gtggactatc
     7621 tacaacaact ccgcgtcatt gcaggagcga gacaagcagc gcaacgcaac ccagtatttg
     7681 aataccacca agaagcctat aaaggctatc aaaaaatgaa agaagaaata aggcgaaata
     7741 tcttacagaa tatcctgtta agcgatgtct cttatacaga gaaaggagat atgcaagtat
     7801 attttgtgta gaaagaagag gaagttatga ccgtctacaa tatcaatctt gggataggtt
     7861 gggccagtag tggtgttgag tacgctcaag cctatcgtgc tcaattatta cgccgaaaag
     7921 gaatcaaaac caagtttatc tttacagatt ttttcggaca agataatata tcagacatga
     7981 cacggaatat cggtttcaag gatgaggaag tcatctggct ctacaccttc tttacagatc
     8041 aaaaggtagc accaactact tatacccttg accaattgag acaagatgtt acaggaacga
     8101 taacgcgaga agagcgtgat gggaagattg ttcgtttctt ctatgaagag cagaatttct
     8161 ttttgacagc ctatctttgt caggaagaca aagatatcgt tcatcgtgtt gaatacgttt
     8221 cgagcgggaa cctgattcgc aaggatttct ttacctacat gagaagtttt agtgagtact
     8281 ataccccacg cgatagcaag gctcacctat acctcagacg cttcttcaat gaagacggat
     8341 ctgttgcata tgaagaagtg attgatggaa ataagagtat ttaccgtatg cctgatgccc
     8401 ttatcagttc gaaagaagag tggattgcct actttatgca gaacctgggc ttgactagcc
     8461 aagatatcgt catcttggac cgagctacag gaactggaca agcagtcttt gccaataaag
     8521 gtcctgctcg attaggtgtc gtcatccatg cggaacatta cagtctcaat caagttaccg
     8581 accaaacgat tctctggaat aactattatg actaccaatt tgtacacgct gactgtgtgg
     8641 atttctttat tacctcgacc aagcgccaaa aagaagtctt agaggagcag tttgaaaagt
     8701 atgttggtaa ggtgcctctc atcgtggaca taccagttgg aagtattgat tatgtcagac
     8761 gtgcagaaat gagaagaccg tactccatta ttaccgcttc acgtctagca acagaaaaac
     8821 atgtggactg gctgaccaag gctgtggttg ctgccaaaga agacctgcca gaactcactt
     8881 ttgatatcta tggtagcggg ggtgagcatg ctaaaattga ggctattatc aaggaacatc
     8941 aggcagaagg ctatattcac ctgaaagggc atcatgattt gaccgaggtt tatcaagatt
     9001 acgaactcta cctgactgct tcaaaaagtg agggctttgg cttgaccttg ttggaagcta
     9061 tcggtgcagg cttacctctc atcggttttg atgcgcctta tggaaaccag actttcattc
     9121 aagaaggacg aaacggttat ctcttgccat tccctacagt agaggatgag caggagattg
     9181 tctcacaata tcgtcaagct attcgtagct tctttagccg tgaagatcgc caggaaatgc
     9241 aggaagcttc ttaccaagta gcatccgcat tcttaaccca tgaaattgag aaaaagtggg
     9301 tagaattagt agaggagatg gtaggaagat gattcattta tttgatacgt accaacaatc
     9361 gagttgggat ttgcattttt ccctcatttg ttcaggatat aacaatccga ccattgtgtt
     9421 aaatgatgat ggcttcttgc ctcatgatgt gacatcgcct tttcgatact ttacggaata
     9481 cgatgctgtg caaggacaag ccttgtattt taatcaggta aaaacaccag ctttctggga
     9541 gattcgtgga gacggtagtc aggcggcaat ctatgattat gcaactaagc gtgcacagat
     9601 tcattacgcc caaccaagcc atatgcgact tgtcaaagcg gtggattggt atgatgaagc
     9661 aggtaaaatc gtcgtgaccg atcgctacaa tgacaaggga atgcggtttg cacaaaccag
     9721 ctatgatagc caaggacagg ctatgcagac cagctactat aaggaagatg gccaggaagt
     9781 cttgattgaa aaccacggca cgggtgactg gattttgaac catcagaacc aaatccattt
     9841 cttcaaaaac aaacatgctt tttatacata ttacctgaag acagctggtt tcaatctaga
     9901 ccgtatcttt tataaccatt taggtcagcc cttcttgaca gctttttatt tggatgaaga
     9961 tggtgaagac attctctttt ggcaagaacc gattcgcgat agtattccag ggaatatgct
    10021 ccttttactc aataagcaga gtagaagacc gaccaagatt gtggtacaag ataaggaagc
    10081 ctatgacaat ctgatggcac tggcaagccc agagcaacag aaaaatattg cctatcttgg
    10141 tttcttgtat ccgtttaaag aacaaactga gtttaaacca gaagctctga tcttaactaa
    10201 ttctgatcaa atcgaacagt tggaacatct ggtcacaagt ttaccgcagc tgcattttca
    10261 tatcggagcg attacagaga tgtctagtca cttgatgacc tttggcaact atgaaaatgt
    10321 gaccctgtat ccaaatattg ccatggattt ggtacaacaa ttgtatcagc ggaccagcct
    10381 ttacttggat atcaatcatg gtaacgaaat cctgtcctct gtccgtacag catttgaata
    10441 ccgtcagctg attttaggtt tcacagaaac ccttcatgcg gcaacttatg ttgcgcgtga
    10501 aaatcgctat gcttcttcgc aagttgaggt catgattgcc aagatcaaat ccttattggc
    10561 aggacagagt gatgagcaaa gtcgcctcct atcctgtcag gacaaagaag ccaacttgac
    10621 cacaattgct gactatcagc gcgtggtaaa ctaggaggga ctatgaagca cgaacaccca
    10681 ttgaaagaaa gcatcgacca gcgactcgaa gaagaacgct atgttattcc gaaaaaaaga
    10741 aaggaaaaga aaaggtttaa ttttcagcta attgtcacca tttcgattct catcagtctc
    10801 ggcttgattg tcttgcaaat tattcaattc ttttttaaat aggaggtagt gggaaagata
    10861 tccatgacgg ctccgccctc acccacagaa taaaaataag gatgaaaagt ctctttttgt
    10921 gcaggctgaa tacaaaaatc cctagtatta catcgaaaaa atacttggga gtagacagaa
    10981 tatatgtact gccgaatgtt aacttaatga cattggcaat tgcgactctt tttagtttat
    11041 tatgattacc caacgatttt atactcaatg aaaatcaaac aacgaggctg gacaaaaatt
    11101 agccaataac taaaaaacac agatagattg agctacttct gatgaaatcc agccgaacta
    11161 tttgtgtttt tccaatcaat agttggtaga aaccgtcttt agtcgtcgcg tgacaagttt
    11221 atcttgataa gctccataga gggattcaac agttacaaat tctccattcg cagcggaagt
    11281 taactgttca ctcaaaaaag at
//
LOCUS       DASGAC010000054        11287 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.054, whole genome shotgun sequence.
ACCESSION   DASGAC010000054 DASGAC010000000
VERSION     DASGAC010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11287
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.054"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            21..1793
                     /locus_tag="U1335_001117"
     CDS             21..1793
                     /locus_tag="U1335_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase"
                     /protein_id="HEM5231604.1"
                     /translation="MKEFYIGDQFYLDDEPFKILSGAIHYFRVHPDDWYHSLYNLKAL
                     GFNTVETYVPWNMHEPRKGEFCYEGILDIERFLKLAQELGLYAIVRPSPYICAEWEWG
                     GLPAWLMKEELRVRSSDSVYLQHLDEYYASLIPKLAKLQLAQGGNVLMFQVENEYGSY
                     GEEKEYLRSVAGLMRKHGLTAPLFTSDGSWRATLRAGTLIEDDIFVTGNFGSKARENF
                     ANMTAFFNEHQKNWPLMCMEFWDGWFNRWGDEIIRREPEEMVDSVMECIELGSLNLYM
                     FHGGTNFGFMNGCSARGQIDLPQVTSYDYDAILDEAGNPTKKFYILQQRLKEVYPELE
                     YAEPLVKEAKAFSDVLLHDKVSLFATLENVSDCVKGFYPKNMEELDQSTGYILYRTEL
                     ERDKTEAERFRVVDARDRIQIYADGKFVATQYQTEIGDDVELDFKDDKLTLDILVENM
                     GRVNYGHKLTAPTQSKGLGRGAMADLHFIGHWETYPLHLESVEDLDFSKGWEEGQVAF
                     YRYQFELDELADTYLDMTGFGKGVVFVNNVNIGRFWEKGPILYLYIPKGYLKKGENEI
                     VVFETEGKYREKISFSQEPVYKEV"
     gene            1849..2334
                     /locus_tag="U1335_001118"
     CDS             1849..2334
                     /locus_tag="U1335_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system
                     mannose/fructose/N-acetylgalactosamine-transporter subunit
                     IIB"
                     /protein_id="HEM5231605.1"
                     /translation="MAIIATRIDGRLIHGQVANLWTTKLNISRIMVIDDAVAQNDIEK
                     QGLKLACPPGVKLSILPIEKAANNIKEGKYDAQRLLIVARRPENFLRLVEYGVELAEL
                     NVGNMSQSPETRSVTRSINVVDKDIADFDALAAKGVKLFAQMVPGDSPKDFMPLLDKV
                     R"
     gene            2373..3269
                     /locus_tag="U1335_001119"
     CDS             2373..3269
                     /locus_tag="U1335_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS
                     mannose/fructose/sorbose/N-acetylgalactosamine transporter
                     subunit IIC"
                     /protein_id="HEM5231606.1"
                     /translation="MMQWWQILLLTLYSAYQICDELTIVSSAGSPVFAGFISGLIMGD
                     MATGLAIGASLQLMVLGVGTFGGASRIDATSGAVLATAFSVSQGIDPELAVSTIAVPV
                     AALLVYTDIAGRFSTTFFAHRVDAAIERFDYAGIERNYLLGAIPWALSRALPVFLALA
                     FGGGFVDAMVKTIEQYQWIANGLTLAARMLPGLGFAILLHYLPLKRNLHYLAVGFALT
                     AMLTVLYGNVSALGGAVAGIVGTLPEDAGVAFVNNFKGLSTIGIAIVGAFLSVLHFKN
                     SQKVTVVAPSNSESGEIEDDEI"
     gene            3256..4074
                     /locus_tag="U1335_001120"
     CDS             3256..4074
                     /locus_tag="U1335_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HEM5231607.1"
                     /translation="MTKSNYKLTKEDFNQINKRSLFTFQLGWNYERMQASGYLYMILP
                     QLRKMYGDGTPELKEMMKLHTQFFNTSPFFHTIITGIDLALEESDGVASKDAVNGIKT
                     GLMGPFAPIGDSIFGSLVPAIMGTVAATMGKEGSPVGIFLWVAVAVAYDIFRWKQLEV
                     AYKEGTKLITTMRDRLTALVDAASVMGVFMMGALIATMINFEVTWAPHVGEKVIDIQD
                     LLNTIFPRLVPAVFTGFVFWLLGRRGMTSTKAILIIIVLALCLSFIGKFAFGMA"
     gene            4074..4475
                     /locus_tag="U1335_001121"
     CDS             4074..4475
                     /locus_tag="U1335_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIA"
                     /protein_id="HEM5231608.1"
                     /translation="MTRSLVLVSHGIFCEELKKSTEMIMGPQEDIYTVALLPEEGPED
                     FQKKFEETIAGLEDFVVFADLLGGTPANVVSRKLIEGGQFDLYAGMNMPMVIGFLNGV
                     LLGEAVDYVEFGTSNLVHVNSLLTSGEDDDE"
     gene            4919..6622
                     /gene="ilvD"
                     /locus_tag="U1335_001122"
     CDS             4919..6622
                     /gene="ilvD"
                     /locus_tag="U1335_001122"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003016651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEM5231609.1"
                     /translation="MRSDMIKIGIDKAPARGLLYATGQVKSAKDFQKPFIAICNSYID
                     IVPGHVHLRELADVAKEAIREAGGIPFEFNTIGVDDGIAMGHIGMRYSLPSRELIADA
                     AETVINAHWFDGVFYIPNCDKITPGMILAAMRTNVPAVFCSGGPMKGGVDMTGHHASL
                     SSLFEAVGSYQAGEMSEQEFEFLEKNACPTCGSCSGMFTANSMNCLMEVLGLALPGNG
                     TILAVSDERRELVRQAAKYLMENVKKNIKPRDIVTKEAIDDAFALDMAMGGSTNTVLH
                     TLAIAREAGIPYDLKDINEIAEKTPYLSKLSPSSAYTMHDVHEAGGVSAIINQLIKNG
                     SIKGDRITVTGRTLKENVSGCEIKNEEVIHPLDHPYSPVGGLSILYGNIAQDGSVIKV
                     GGVDPSVKTFKGEALCFDSQDEALEAIDNGTVQKGHVVVIRYEGPQGGPGMPEMLAPT
                     SKIVGRGLGKDVALITDGRFSGATRGIAIGHVSPEAAAGGNIALIEDGDEIAIDLINR
                     TIDVLVDDEVLAERRRLLKSFKPKISSGWLRRYTRFASSANFGGSMMTDEEFAERQAE
                     R"
     gene            6728..7732
                     /locus_tag="U1335_001123"
     CDS             6728..7732
                     /locus_tag="U1335_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose mutarotase"
                     /protein_id="HEM5231610.1"
                     /translation="MIEQSQFGKGEALHFFLLNANGMKVGLTNFGARIVEVLLPVEED
                     GGFRNVSLSASTDEEYRRTDLYPGSTIVPVAGRISGAQTEINGVKYCLTENEPSRTLH
                     GGIDTANEQYWETSVDQENNQVTFGITLKDGFNGFPGDVMVKAIYRLTDANELMVEYR
                     AVSERDTIFNPTNHVYFNLTGDFTQSVADHKLIIAASRFAPLGENNLPTGVLQDVRGT
                     PFDFRSGGTLAQGFDSDFAQNVLVKGYDHPWLLDEVDVPVRVVSPDGKVELIVRTNQP
                     SVVIYTYNYPVEELATFHGAFSLECQALPNACNLDGFGSILLEKGQDFLSQTIYQFRW
                     "
     gene            complement(8191..9138)
                     /locus_tag="U1335_001124"
     CDS             complement(8191..9138)
                     /locus_tag="U1335_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002268219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEM5231611.1"
                     /translation="MVQILTSIENIFPIIFIIALGFYLNEKGWFGKEFGANISRLVMN
                     VALPASIFISVLKYLTLDKLIEVAPGLLFTFGGVMLAYLAGYLVIKIFKVPAGRRGVL
                     LNMFANANTIFIGLPLNIALFGDNSISYFLVYYITNTISTWAFGALLIAQDAKNPEDK
                     QKGNFNWRKLLPAPLVGFLISLFFLFFKIPVPTFVDSTLGYIGNIVTPLSLIYIGIVL
                     SKAGLSSIRFDRDTVLALIGRFLLSPILMYLILALWGSQLPRIEYNTFMVQAAVPGLA
                     VLPILANEGKGDVQYATNVVTTSTILFVVVIPIVVSLLR"
     gene            complement(9152..10771)
                     /locus_tag="U1335_001125"
     CDS             complement(9152..10771)
                     /locus_tag="U1335_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003066668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent malic enzyme"
                     /protein_id="HEM5231612.1"
                     /translation="MNGHHILNDPFLNKGTAFSLEERKELGLVGLLPPHVQTIEEQAA
                     QAYAHYQRKDSNIEKRHFLMEIFNTNRTLFYYLFNQHIVEFNPVVYDPVIAESIEQYS
                     DLFVDPQYAAFLSVEHPEDIRDSLKNAAGDRKVRLIVVTDAEGILGIGDWGTQGVDIA
                     IGKLMIYTAAAGIDPTSVLPVVIDAGTNRTELLEHPFYLGNRHERIRGEAYYSFIDQF
                     VETALELFPDLYLHWEDFGRGNAANILNKYKDKIPTFNDDIQGTGIITLAGIYGSLDI
                     SGESLTDQRYLCFGGGTAGAGIAHRVLLEMINEGLSEEEAYDRFYMVDKQGLLFDDMD
                     DLTPEQRPFARKRSEFENSEELTNLTAVVKTVKPTILVGTSTQPNTFTQEIVEDMCKF
                     TEHPIIFPLSNPTKLAEATAEDLIKWSDGKAFVATGIPSDDINYNGVTYQIGQANNAL
                     IYPGLGLGVMASKAKLLTDQMIGAAARSLSGLVDNGKPGAPVLPPVSRLTEFSINVAN
                     AVAKKAQEQGLAQVEGDMEEAVQHLKWYPKY"
     gene            10948..>11287
                     /locus_tag="U1335_001126"
     CDS             10948..>11287
                     /locus_tag="U1335_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002279195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5231613.1"
                     /translation="MTETNYLQKYVAKKVKYHRTQQGLSQEKLSEKAGLGLKYVNNIE
                     NKNYNLRLQTLEKVIEALGMTPEEFFDFSSLEGKTEPDTKLSIRRLTMKLKQLPKEKQ
                     ESFLMVFETIL"
BASE COUNT         3251 a         2034 c         2660 g         3342 t
ORIGIN      
        1 cggttgcatc ggaggaagaa atgaaagaat tttatattgg agaccaattt tatttagacg
       61 atgaaccttt taagatttta tcaggtgcga ttcattattt tcgtgtccat cctgatgatt
      121 ggtaccattc tttgtataac ttaaaggccc ttggttttaa tacggttgaa acctatgtcc
      181 cttggaatat gcatgaacct cgaaagggtg agttttgtta cgagggtata ttggatattg
      241 agcgattttt gaaattggct caagaattag ggctttatgc aattgtacgt ccttcccctt
      301 atatttgtgc ggagtgggaa tggggtggcc tccctgcttg gttgatgaag gaagagctta
      361 gagtacgttc gagtgattcg gtgtacttgc agcacttaga tgaatattac gcttctctta
      421 ttcctaaatt ggccaagctc caactcgcac agggtggaaa tgtacttatg ttccaagtgg
      481 aaaatgagta tggctcttat ggtgaggaga aggagtatct aagatcggtg gctggcttga
      541 tgcgtaaaca tggtctaact gctcccttgt ttacctcgga cggttcttgg cgagcaacgt
      601 tacgtgcagg aacactgata gaggacgata tatttgtaac aggaaacttt ggttctaaag
      661 ctagagagaa ttttgcaaat atgacggcat tctttaatga acatcagaag aattggccac
      721 tcatgtgtat ggaattttgg gatggttggt tcaatcgttg gggcgatgaa attattcgta
      781 gagagccgga ggaaatggtt gattcggtta tggaatgtat cgaattaggc tccttgaatc
      841 tgtacatgtt ccatggtgga acaaattttg gtttcatgaa tggttgctct gctcgtggtc
      901 aaattgattt gcctcaggta acttcttatg attatgatgc tatattggat gaagctggaa
      961 atcctactaa gaagttttat attttgcaac aacgtttgaa agaagtctat cctgaattag
     1021 agtatgcaga accgcttgta aaagaggcaa aagctttttc agatgtgttg cttcatgata
     1081 aggtgagttt atttgctact ctagaaaatg taagcgattg cgtaaaaggg ttttatccta
     1141 agaatatgga agaacttgat cagtcaacag gttatatttt atatagaaca gagttggagc
     1201 gggataagac agaagcggaa cgtttccgag tggttgatgc gcgtgaccgt atccaaattt
     1261 atgcagatgg aaaattcgtt gcaactcagt atcagacaga gattggtgac gatgttgaat
     1321 tggattttaa agatgacaag ctaacattag atattttggt agaaaatatg ggacgtgtca
     1381 attatgggca caaactaacg gctcctaccc agtctaaagg gcttggtcga ggtgcgatgg
     1441 ctgatttaca ttttattggt cattgggaaa cctatccttt gcatcttgag tcagttgagg
     1501 acctggattt tagtaagggc tgggaggaag gtcaagttgc tttctatcgt tatcagtttg
     1561 aactggatga acttgcggat acttacttag acatgacagg ttttggtaag ggagttgttt
     1621 tcgttaataa tgtaaatatc ggacgtttct gggaaaaagg accaatcctc tatctctata
     1681 ttccaaaagg atacttaaag aaaggagaaa atgaaatcgt cgtcttcgag acggaaggaa
     1741 aatatagaga gaagattagt ttttcacagg aacccgttta taaagaggtg taggtgttct
     1801 gcagagaaca tctaacagaa agatttatga agaaaaggag aacactgtat ggcaattatt
     1861 gctacgcgta ttgatggtcg tttgattcac ggtcaggttg ctaacctttg gactactaaa
     1921 ttaaatatta gtcgtatcat ggttattgac gatgcggttg ctcaaaacga cattgagaaa
     1981 caaggtttga aattggcttg cccaccgggg gtaaaattat ctattttgcc aatcgaaaaa
     2041 gcagccaata acatcaagga aggcaaatat gatgcgcaac gtctcttgat tgttgctcgt
     2101 cgtccagaaa acttccttcg cttggtagaa tatggtgtag aacttgctga attgaacgtc
     2161 ggcaatatgt cacaatcacc agaaactcgt tctgtaactc gttctattaa cgttgtagat
     2221 aaggatattg cagattttga tgccttggcg gctaagggtg taaaattatt tgcacaaatg
     2281 gtacctggcg attcaccaaa agactttatg ccattattgg ataaggttag ataacattcg
     2341 gatatttttg aaaaatttaa aggaggatca ctattatgca atggtggcaa atattacttc
     2401 taacgctcta ctctgcttac cagatttgtg atgagctgac aattgtatcg tcagcaggtt
     2461 caccggtctt tgcagggttc atctctggtt taatcatggg cgacatggca acaggtttgg
     2521 caatcggtgc tagcttgcag ctcatggtac ttggtgtagg tactttcggt ggtgcatctc
     2581 gtatcgacgc aacctctggt gcggtattgg caactgcctt ctctgtatca caaggtattg
     2641 accctgaact tgcggtatct actatcgcgg ttccagtagc agcacttctt gtttatacag
     2701 atattgctgg tcgtttctca actactttct ttgcacaccg tgtagatgct gcgattgaac
     2761 gctttgacta cgctggtatc gaacgcaact acttgcttgg tgcaattcct tgggcacttt
     2821 ctcgtgcact tccagtcttc cttgctcttg cttttggtgg tgggtttgta gatgcaatgg
     2881 ttaaaactat tgaacaatac caatggattg ccaatggttt gacgcttgca gctcgtatgc
     2941 ttccaggtct tggatttgca atcttgctcc actaccttcc attgaaacgt aaccttcact
     3001 acttggcggt aggtttcgcc cttacagcta tgttgactgt tctttacggt aacgtatcag
     3061 ctttgggtgg tgcagttgct ggtatcgttg gcactcttcc tgaagatgca ggcgtagctt
     3121 ttgttaacaa cttcaaaggc ttgtcaacga tcggtatcgc tattgtgggt gcattccttt
     3181 cagtgcttca cttcaaaaat agccaaaaag taactgtggt tgctccatca aattcagaaa
     3241 gtggggaaat tgaagatgac gaaatctaat tacaaattaa caaaagaaga ttttaatcaa
     3301 atcaacaaac gtagtttatt cactttccaa cttggttgga actacgagcg gatgcaagcg
     3361 tctggctacc tctacatgat tttgccacaa ttgcgtaaaa tgtatggaga tggtactcct
     3421 gagttgaagg aaatgatgaa actgcatacc cagttcttca atacttcacc attcttccac
     3481 actattatca caggtattga cttggctttg gaagaaagcg acggtgtggc ttctaaagac
     3541 gcggttaacg gtattaagac tggtttgatg ggtccatttg ccccaatcgg tgactctatc
     3601 tttggatctc ttgttccagc gattatgggt actgtggcag caacaatggg taaggaaggt
     3661 tctccggtag gtattttcct ttgggtagcc gtggctgttg catatgatat tttccgctgg
     3721 aaacagttgg aagttgccta caaagagggg actaaactca tcacaactat gcgtgaccgc
     3781 ttgacagctc ttgtagatgc tgcttctgta atgggtgtct tcatgatggg tgccttgatt
     3841 gcaactatga ttaactttga agtgacttgg gctccacatg taggtgagaa agtgattgac
     3901 attcaagact tgctcaacac aatcttccct cgccttgttc cagctgtctt tacaggattt
     3961 gtcttctggc ttcttggtcg tcgtggcatg acttcgacta aagccatctt gattatcatt
     4021 gtgcttgcac tttgcttgtc attcattggt aagtttgcat ttggtatggc ataatgacta
     4081 gaagtttagt attagtaagt catggtatct tctgtgaaga gttgaagaaa tctactgaga
     4141 tgattatggg tcctcaagag gacatctaca cagtagcttt attaccagaa gaaggtccag
     4201 aagacttcca gaaaaaattt gaagaaacaa ttgcaggatt ggaagatttt gttgtcttcg
     4261 cagacttgtt gggcggtaca ccagccaacg tcgtatcacg aaaattgatt gaaggcggac
     4321 agtttgacct ctatgcaggt atgaacatgc caatggttat cggtttcttg aacggcgttt
     4381 tgcttggcga agccgtagac tatgtcgaat tcggtacaag caaccttgtc catgtcaata
     4441 gcctattaac aagtggtgag gatgacgatg agtgaaacag tccgatggac tagtttagcc
     4501 ctagcctaga aactggaaag cgaggacagt caggaaaatg actgtttcag cccgagccta
     4561 gaaactggaa agcgaggata gtcagtgact atttcggtta gagatcatct tcgtcaagta
     4621 aaaataatac tgtagtcaaa ttggctttaa gtatcctgag actggggaaa cccggtctct
     4681 ttttgtatgg agtatcattt gtcatatttc ttgttacatt gctctatcct atcatgttgt
     4741 gaaactcctt cctaccattc ttagtctatg gagaggaata ataaaatgcc agtgaatgaa
     4801 tccattcaca taaagatcaa aaacaaaaat gaccaaattt tctgaaaatt tattgacatt
     4861 cacttttaaa gtggtaacat gtaatgtgag gaatcatttt aaatacaagg agaatccaat
     4921 gagaagtgat atgataaaaa tcgggattga caaggctcca gcgcgtggct tattatacgc
     4981 gacaggacaa gtgaagtctg caaaggattt tcaaaaaccc tttattgcga tttgcaattc
     5041 ctacatcgat attgtacctg gacatgttca tttgagagag ttggcggatg tggcaaaaga
     5101 agcgataagg gaagctggtg ggattccgtt tgagtttaac accattgggg ttgatgacgg
     5161 tattgccatg ggacacattg gaatgagata cagtttacct tcaagggaat tgatagcaga
     5221 tgcggctgaa acagtcatca atgcgcattg gtttgatgga gttttttata tcccaaactg
     5281 cgataagatc actcctggaa tgattttagc agctatgcga accaatgttc cagcagtgtt
     5341 ctgttctgga ggacctatga agggtggtgt cgatatgaca gggcatcatg ccagcctttc
     5401 tagtctattt gaggcagttg gtagctacca agctggggaa atgtcagaac aggagtttga
     5461 atttctagaa aaaaatgctt gtccaacttg cggttcttgt tcgggaatgt ttacagccaa
     5521 ttcaatgaat tgtttgatgg aggtattggg acttgcattg ccagggaatg gtacaattct
     5581 tgcagtgtcg gatgaacgac gagaacttgt tcgtcaagcg gccaaatatt taatggaaaa
     5641 tgttaaaaag aatattaaac ctagagacat tgtaacgaaa gaagcaatag atgatgcgtt
     5701 tgctttggat atggcaatgg gagggtcaac gaatacagta ttacacacgc tagccattgc
     5761 cagagaagct gggattccct atgatttgaa agatattaat gagatcgctg aaaaaacacc
     5821 ttatctttct aaattatctc cgtcatcagc ttacactatg catgatgtac atgaggcggg
     5881 aggggtttca gcgattatca atcaattgat taagaatggt tctatcaaag gggatcgcat
     5941 aactgtaaca ggtagaactt tgaaagagaa tgtttcaggt tgtgagatta agaatgaaga
     6001 ggttattcat ccattagatc atccatactc accagttggt ggcttatcca ttctttatgg
     6061 gaatattgcc caagatggtt ccgttattaa ggtaggtggg gtagaccctt ctgtaaaaac
     6121 atttaaaggt gaggctcttt gctttgactc tcaagatgaa gcgcttgagg caattgataa
     6181 tggtacagtt cagaaaggtc atgttgtcgt gattcgttac gaggggccac aaggcggacc
     6241 tggaatgcca gaaatgttag ctcctacttc aaaaattgtc ggtcgaggtt tggggaaaga
     6301 tgttgcactt ataacggatg gtcgtttctc tggtgcaact agagggattg cgattggtca
     6361 cgtctctcca gaggcagctg ctggtggaaa tattgctttg attgaggatg gagatgagat
     6421 tgcgattgat ttgatcaatc gtacgataga tgttcttgtg gatgatgaag tacttgctga
     6481 acgtcgtcgt ctcttaaaat cattcaagcc taaaatatca agtggttggc tgcgtcgtta
     6541 tacacgtttt gcttcttcgg ccaactttgg tggttcgatg atgaccgatg aggagtttgc
     6601 agaacgccaa gcagagcgct agaataatta gtataaaatg aaaaaggaat tcttgtagat
     6661 tccttttcat tatggtctat taatgatata ctattcatat attaaatcaa taaaaatagg
     6721 agttcgtatg attgaacaaa gtcagtttgg aaagggagaa gcccttcatt tcttcctttt
     6781 gaatgctaat ggtatgaagg ttggtttgac aaattttgga gctcgtatcg ttgaagttct
     6841 tcttcctgtt gaggaagatg gagggtttcg gaatgttagt ctttctgctt caacagatga
     6901 ggagtataga cgaacagatt tgtaccctgg ttctacaatt gttccagttg caggtcgtat
     6961 ttcaggggca caaacagaaa taaatggagt gaagtactgc cttacagaaa atgagccgag
     7021 tcgaaccctc catggtggga ttgatactgc aaatgagcaa tactgggaga caagtgtaga
     7081 tcaggagaat aatcaagtta cctttggtat taccttaaag gatggtttta atggttttcc
     7141 aggcgatgtg atggtcaagg caatttatcg tctgacagat gccaatgagc tcatggttga
     7201 gtaccgggct gtttcggagc gggatacgat tttcaatccg accaaccatg tgtattttaa
     7261 tttgaccggc gattttacgc agtcggtggc ggaccacaag ttgatcatcg cggctagccg
     7321 ttttgctccc ttgggcgaga acaatctgcc gaccggcgtt ttgcaagatg tgagagggac
     7381 gccgtttgat ttccgttcag gagggacact tgctcaagga tttgatagtg attttgccca
     7441 gaatgttttg gtcaagggct atgaccatcc gtggctattg gatgaggtag atgtgcctgt
     7501 gcgcgtggtc agtccagatg ggaaagtcga actcattgtc cgcaccaatc agccttctgt
     7561 cgtcatttat acctacaatt atcctgtgga ggaattagct acttttcacg gggcattcag
     7621 tctggaatgt caggctttgc caaatgcttg caacctagat ggttttggtt cgattttatt
     7681 ggaaaaagga caggatttcc tgtcacaaac gatttaccag tttagatggt aatggtaaga
     7741 ggctgggcaa aaagcccagc accgcttctc aacgttagtg tcaacatctc agcgcagtgg
     7801 ttgattgggt ttaacagtcc agtggactgt taaaggttgg agataggatt tgcgaagcaa
     7861 atctcagcaa ttcgtgtttt acactccaaa tctgaccatt acgactgatg cgaacagagt
     7921 tcgcttcatt tccaacctcc aacagtcact actctgactg ttggagctgt gcggaggtgg
     7981 gagtgaaaca gtctgggaat agactgtttc agctcaacaa ctagaaataa agacttgttg
     8041 acgaactctt ctatgaatgg tcgagttctt tcacactccc tttcattttc ttaggtagac
     8101 gataagtagt ataaaaagag tttgtactgg taaagtgtac aaactctttc tatataaaac
     8161 agaagtaaat cgctgcttat cgtcaatatc ctatcttagc aggctaacta caattggaat
     8221 gacgactaca aagaggatgg tggaagttgt gactacattt gtcgcatact gtacgtcacc
     8281 tttaccttca ttggccaaaa tgggtaagac agccaatcca ggaactgcag cctgtaccat
     8341 gaaagtattg tattcaatac gaggcaactg acttccccac aaggctaaaa tgagatacat
     8401 taaaataggg gataggagga aacgtcctat gagtgctagt actgtgtctc tatcgaagcg
     8461 aatagaggat agacctgctt tcgataggac gataccgata taaataagag aaagtggggt
     8521 tacaatatta ccaatatagc cgagagtact gtctacaaag gtagggacag gaatcttaaa
     8581 gaacaaaaag aataaggaga tgagaaagcc aacaagagga gcaggcagta actttctcca
     8641 attgaagttt cctttttgtt tatcttcggg atttttagca tcttgtgcga ttaacaaggc
     8701 accaaatgcc caagtagaaa tggtattggt aatataatac actaagaaat aggaaatcga
     8761 gttgtcgcca aagagggcaa tattcaaagg aagtccgata aatatggtat tggcattggc
     8821 aaacatattg agcaggactc cccgtcgtcc tgcaggaacc ttaaaaatct tgatgacaag
     8881 gtatccagcc agataggcta gcataactcc gccaaatgtg aagagtagac ctggggctac
     8941 ttctatcagc ttatccaagg tcagatattt taaaacggag ataaagatag atgccggaag
     9001 tgctacgttc atgacgagac gagaaatatt tgctccaaat tccttaccga accacccctt
     9061 ttcattgaga tagaagccaa gggctatgat aaagataata gggaaaatat tttcaattga
     9121 agtgagaatc tgtaccattt ttacccctag cttaatattt tggataccat ttaagatgtt
     9181 gtacagcttc ttccatatct ccttcgactt gcgctaaacc ttgttcttga gcttttttgg
     9241 caacagcgtt tgccacgttg atagagaatt cagtcaagcg agaaacagga ggaagcactg
     9301 gagctccggg cttgccatta tccaccaaac cactgagtga gcgtgctgca gcgccaatca
     9361 tttggtcggt caatagtttt gccttagaag ccatgacacc aagaccaaga cctggataga
     9421 ttaaggcgtt attggcttga ccaatttgat aggtgactcc attgtagttg atgtcatctg
     9481 acgggatacc ggttgccaca aaggcctttc cgtctgacca cttaattaag tcctcagcag
     9541 ttgcctcggc cagcttagtc ggattgctga gagggaaaat aataggatgc tcggtaaact
     9601 tacacatgtc ctcaacaatt tcttgagtaa aggtatttgg ttgtgttgaa gtacctacta
     9661 ggatagttgg tttgacagtc ttgacgacgg cagtgaggtt tgtgagttcc tcactatttt
     9721 caaattcaga gcgtttgcga gcaaatggtc gttgctccgg agtcaagtca tccatgtcat
     9781 cgaataacag accttgttta tcaaccatgt agaaacggtc gtaggcctct tcttctgaca
     9841 aaccttcgtt gatcatttca aggaggacac ggtgggcaat gccagcaccg gcagtacctc
     9901 caccaaagca gaggtaacgt tgatcggtta atgattcacc agaaatatca agtgatccgt
     9961 agatacctgc taaggtaata attcctgtac cttgaatatc gtcgttaaat gtagggattt
    10021 tgtctttgta tttatttaag atatttgctg cattaccgcg accgaaatct tcccaatgca
    10081 gatagaggtc agggaagagc tccaaagcag tttcaacaaa ttgatcaata aagctatagt
    10141 aggcctctcc acgaatgcgc tcatgtcgat tgccaagata gaatggatgt tccaaaagct
    10201 cagtgcgatt ggtaccagca tcaatgacaa ctggaagaac actagtagga tcgattcctg
    10261 cagcagcagt ataaatcatc aatttgccga tggcaatgtc aacaccttgt gtgccccaat
    10321 cgccaatacc tagaattcct tctgcgtcag tgacaacaat cagacggact ttacggtctc
    10381 ctgcagcatt ttttaaacta tctcgaatat cctcaggatg ttcaacagac aaaaaggctg
    10441 catattgagg gtctacaaag agatcactgt attgttcgat ggactcagca atgacagggt
    10501 cataaaccac tggattgaat tctacaatgt gttggttgaa aaggtagtag aaaagtgttc
    10561 gattggtatt gaaaatttcc atcaagaaat gtcttttctc aatattagaa tcttttcgtt
    10621 ggtagtgtgc ataagcctgt gcagcttgtt cttcaatagt ttgtacatga ggaggtaata
    10681 gcccgactag tccaagctcc ttacgttctt caagagaaaa tgcggttcct ttattcaaaa
    10741 aagggtcgtt taaaatatga tgtccgttca tagagacctc caaatcaata agttgtagtc
    10801 actgagtgac tggtgaaagt acaatctaag ccaatatgta ttagctcgat ttactctcta
    10861 ttatagcacg gaatggtacc gaaaacaata ctcagtatcg tttagaaggt tactctgtat
    10921 cataaaaaac agtatgatat aggtactatg acagaaacaa attatctcca aaaatacgtt
    10981 gctaaaaaag tcaaatatca caggacccaa caaggattga gccaagaaaa attgtctgag
    11041 aaagctggtt tgggactcaa gtatgtcaat aatattgaaa ataaaaatta taatctcaga
    11101 ttgcagactt tggaaaaagt gattgaggct ttagggatga ccccagagga gttttttgat
    11161 ttctctagcc tggagggtaa aactgagcca gatacaaaat tgagtatccg acgattgaca
    11221 atgaagctaa aacaattacc gaaggaaaag caggaatcct ttttaatggt ttttgaaacg
    11281 attttgg
//
LOCUS       DASGAC010000055        11230 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.055, whole genome shotgun sequence.
ACCESSION   DASGAC010000055 DASGAC010000000
VERSION     DASGAC010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11230)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11230)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11230
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.055"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..794
                     /locus_tag="U1335_001127"
     CDS             <1..794
                     /locus_tag="U1335_001127"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231614.1"
                     /translation="LGLLGFLAGGTNENAAPSVLLMGALYLFYEVVVNKNFQLQKWFS
                     LFYMFAGFLLMMSSPGSQERGSAQFNIDFIITQLLTILRYQRSHFGILYAGTIIMLVF
                     LLYRRMVDKEKIVKIFVFIIGHFASIYCLVFSPEIPDRVYFCSTIFLIIPYLYMFFIL
                     LKETPVKFFINKVLCAGILLTTMSYCFVFWDNYTTYKQVEQQYAQIFLAKEQGVDTVV
                     LKRLTPSRTLYNAYNGTANLGPSEQDWFNSWMAVYFGIDKIQSVD"
     gene            887..1813
                     /locus_tag="U1335_001128"
     CDS             887..1813
                     /locus_tag="U1335_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5231615.1"
                     /translation="MISVIVPCFNEEEAIPYFYDAMEKVRKEMGEQFEYIFVNDGSKD
                     RTLKVLRQLSGQDRAVRYLSFSRNFGKEAALYAGLQAAQGGLVTVMDVDLQDPPEMLM
                     EMKAMLDGNPDLDCVGTRRVSRDGEPPIRSFFAKLFYKLMNKISQVEVVDGARDFRLM
                     RRHMVAAILSVSEYNRFSKGIFAWVGFETEYLPYENVERVAGETSWSFWKLLSYSIEG
                     IINFSDTPLNIASYTGFFTFLLSLVLMVFVVFKTLVFGDPTIGWPSTICIILFLGGLQ
                     LMTIGILGKYLAKVFLETKKRPIYIVKEKSSN"
     gene            1823..2476
                     /locus_tag="U1335_001129"
     CDS             1823..2476
                     /locus_tag="U1335_001129"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001841111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEM5231616.1"
                     /translation="MEHSAWHELIKAQLPEHYFGKINQFLDHVYSGGTIYPPREKVFA
                     AIQTTDLEEVKVVILGQDPYHGPGQAQGLSFSVPNSVPAPPSLQNILKELTDDIGVKQ
                     DHDLTAWAEQGVLLLNACLTVPAGQANGHAGQIWEPFTDAVIKVVNSLDQPVVYILWG
                     AYARKKKALITNPKHLVIESAHPSPLSAYRGFFGSKPFSQANAYLTSQGRTGIDWLR"
     gene            2519..3790
                     /locus_tag="U1335_001130"
     CDS             2519..3790
                     /locus_tag="U1335_001130"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEM5231617.1"
                     /translation="MLLVKNGRVLDPQSGLDKVCDILMDGSKIVKIAESISEDVEQEV
                     IDATGLVVAPGLVDVHVHFREPGQTHKEDIHTGALSAAAGGFTSVVMMANTNPTISNV
                     ETLKEVLDSAKKEAIHIYSVATITDHFDGQNLTDFPALLEAGAVAFSDDGIPLTNAGV
                     VRKAMKLAKEQGCLISLHEEDPDLNGVLGLNEQVAEKHFHVCGATGVAEYSMVARDVM
                     IAYETGARVHIQHLSKAESVKVVEFVQGLGANVTAEVAPQHFSRTEDLLLTKGANAKM
                     NPPLRLESDRLAVIEGLKSGVISVIATDHAPHHADEKNVEDLTQAPSGMTGLETSLSL
                     GLTHLVEEGHLTLVQLLEKMTINPAKLYGLDAGYLAENGPADLVIFDPNANRLVTADF
                     ASKSANSPFVGDSLKGQVLYTIANGQIVFGK"
     gene            3921..6023
                     /locus_tag="U1335_001131"
     CDS             3921..6023
                     /locus_tag="U1335_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HEM5231618.1"
                     /translation="MKKKKILLPVMSTLLLAPFVLAQQVQAAETTTAATTTNQPATTD
                     ATATVPTTSVENVATEETVVPAAEETVEAVIIHTNDVHGRILEEKNVIGDAKAAAVIE
                     EERAKVENTIVVDAGDAFQGLPISNSTKGEDRANIMNQVGYDAMAVGNHEFDFGMDQA
                     IKYKETLNFPLLSANTYVNGARVFEASTIVDKTPTVVGDEFVVIGVTTPETATKTHPK
                     NVEGVIFTDPVTEVNKVIDEVEARALADNRVYKNYIILAHLGVDSTTPVEWRGSTLAE
                     ALSKNSKLAGKRVIVIDGHSHTVEATTYGDNVTYNQTGSYLKNIGKVTLKSDKLLGEA
                     SLISAEDTKNVTPNAKIVALVDEIKAKYEAENAQVVIENNPVELNGDRSNVRVRETNL
                     GNAVTDAIYAYGQTGFSNKTSLAVTNGGGLRATIAKDQPVTKGDIIAVLPFGNIVSQI
                     TVTGQQIYDMFTKSLSSTLQVNPETGEMLLDENGMPLFEASGGFLHISGANVLYDPTL
                     PVEERVLLIGILNPETGEYDALDLEKTYYLATNDFLAAGGDGYTMLGGAREEGPSLDS
                     VFAEYLKTADLSAYEVVNPYSRIIPIDTDEDGSPDFIEILLDTDPENPSSNPGTVPSS
                     NPDSPSNQVQNTSATDKKVPVDSPKVGDKKPEVASPAKTTKAGVLPNTGDQMNLTLSL
                     FGLGLAGLAMAVGRRKEN"
     gene            6075..6722
                     /locus_tag="U1335_001132"
     CDS             6075..6722
                     /locus_tag="U1335_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HEM5231619.1"
                     /translation="MQTVFQYQKEGDREQISSYVLLSNSPRRKQLLGFLQPQIASVEV
                     DERGIEEHFMKQFATDDFLTRAAKTCCEISKAKSDMDLVTGHLYISADTIVVSDGQIF
                     NKPQDLTEAETMLRSYFGKSHHVVTSVCLRTSHSLDVFYTVAQIDFVDYYPALEEVIQ
                     SYIREKQPLDKAGAYGIQELDPRFVAGISGDIHTIIGLPVAEVSRRIFSEEGFEK"
     gene            6774..7262
                     /locus_tag="U1335_001133"
     CDS             6774..7262
                     /locus_tag="U1335_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEM5231620.1"
                     /translation="MTVDIERYKQLAQQKQGEHRKFLANLKKKAPKNLDRIVQDIHAE
                     VFSEINCTECANCCKTLGPLFTEADITRIAKHLRMKLPVFEDMYLRVDEDGDKVFQSM
                     PCPFLGGDNLCSIYDARPKACREFPHTDRKKIYQINNLTIKNTLICPAAYLFVEKLRE
                     RI"
     gene            7362..8213
                     /gene="ylqF"
                     /locus_tag="U1335_001134"
     CDS             7362..8213
                     /gene="ylqF"
                     /locus_tag="U1335_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002962311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YlqF"
                     /protein_id="HEM5231621.1"
                     /translation="MAIIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPM
                     LTKIVGDKPKLMILNKVDLADPVRTKEWQSYFEGQGIRTLAINSKEQATVKKVTDAAK
                     SLMKEKIERLRQRGIQKETLRTMIIGIPNAGKSTLMNRLAGKKIAVVGNKPGVTKGQQ
                     WLKSNKDLEILDTPGILWPKFEDQEVGLKLALTGAIKDQLLPMDEVTIFGLDYFKANY
                     PERLQERFKGMDLELETPELIMDWTKKLGFRDDYDRFYNLFVKDVRDGRLGTYTLDKV
                     SDLDGND"
     gene            8200..8973
                     /locus_tag="U1335_001135"
     CDS             8200..8973
                     /locus_tag="U1335_001135"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEM5231622.1"
                     /translation="MATIKEVTALLAQVDSLDSPVWDQLSQDERAGVQAAIKKRRKEL
                     EKVAAEDARLEAMLFYEKDLYDNGVEFIAGIDEVGRGPLAGPVVAAAVILPKGCKIRY
                     LNDSKKIPKSKHEAIYQEVMERAVAVGVGIKDAAVIDQVNIYEATKLAMLEALGQLSQ
                     EPEHLLIDAMKLDTPIPQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDKEFAGYGF
                     AKNAGYGTAEHLEGLNKLGITPIHRKTFEPIKSMLAGGN"
     gene            8976..9986
                     /locus_tag="U1335_001136"
     CDS             8976..9986
                     /locus_tag="U1335_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEM5231623.1"
                     /translation="MIVFFWLFLAAIGLFALVYFWERRSIFISLFALNILVWALAWIV
                     STGILENNEILRLLAIALAMLLALAFLSGPFVLLITLYLNGFRILKREGVRFHNFLSL
                     GLAIGLTFYLFIAPSVASTLSAISFFNMVFVYVGFLVSYAIIISMLYTTSSFVNLVNL
                     FPGKLDYVVVLGAGLIGDKVTPLLASRIDKGIAVYQKHPGSKLIMSGGQGPDEIIAEG
                     QAMANYALEKGVPAEDILIENQSTNTEENLKYSYALMKPGSRFALVTNYYHVFRALLL
                     ARQLKIKCIGYGAKTKFYFSLNAFIREFVGYVVMSRKAHLVFLGIVSVLCLLGMIVSL
                     MH"
     gene            complement(10021..10671)
                     /locus_tag="U1335_001137"
     CDS             complement(10021..10671)
                     /locus_tag="U1335_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002286719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HEM5231624.1"
                     /translation="MNPSLKLSLQLSFGEEVANSVTHAVGALLMLILLPITAIHSFQD
                     YNVTAVVGMSIFVISLFLMFLSSSIYHSMPYASTHKYILRIIDHSMIYIAIAGSYTPV
                     ALSLVGGWLGYLIVGLQWGLTIFGILYKIFAKKINETFSLFLYLFMGWLVVFILPAIL
                     QKTGLVFGILMLAGGLSYTIGALFYAKKKPYFHMIWHLFILLASALQYMAIVYFML"
     gene            complement(10661..11212)
                     /locus_tag="U1335_001138"
     CDS             complement(10661..11212)
                     /locus_tag="U1335_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1836 domain-containing protein"
                     /protein_id="HEM5231625.1"
                     /translation="MKQTIPYWHELPDLDLYLDQVLLYVNQVVNSQESLEQKSLYSMK
                     INSSLGNEVDDRTGVHQGKVTTDNIDFRRVLTAAMINNYVKHKQIEKPVKKKYQKQQV
                     ARLIALTILKNVFSIQEISQTLNLLLQSSNSETLYNHFVDCMRNEENEETPDIIRYAC
                     QSIKLYYKTRQLTMELERSHHES"
BASE COUNT         3264 a         2139 c         2556 g         3271 t
ORIGIN      
        1 ctttaggatt attgggtttt cttgctggag gaacaaatga gaatgcagct cctagcgtgc
       61 ttttaatggg tgccttgtat cttttttatg aggtagttgt taataagaat tttcaattac
      121 agaagtggtt ttctttgttt tacatgtttg caggatttct attaatgatg tcctcacctg
      181 gttctcaaga gcgtggatca gcccaattca atatagattt tattatcacc cagttattga
      241 ctatcttacg ttatcaacgt tcacattttg gtattttata tgctggaact attataatgt
      301 tggtattcct tttatatagg agaatggtcg ataaagagaa aattgtcaag atctttgtgt
      361 ttatcatagg tcatttcgct tctatttatt gcttggtttt ttctccggag ataccagata
      421 gggtttattt ttgttcgaca attttcctaa tcatacctta tttatacatg ttttttatcc
      481 ttttaaaaga gactccagtt aaatttttta taaacaaggt tttatgtgca ggtatattat
      541 taacaacgat gtcctattgt tttgtttttt gggataacta tacaacatat aaacaagtag
      601 aacaacaata tgctcaaata tttttagcga aggaacaggg agtggatact gtggttttga
      661 aaaggttgac tccaagtaga actttatata atgcctataa tgggactgct aatttagggc
      721 caagtgaaca agactggttt aatagttgga tggctgtgta tttcggtatt gataaaatac
      781 aatcagttga ctgaagtata cccatatcct agcagttttt ttgcaaaatg gtataatggg
      841 aattaagtat gtttgacata caaattgacc gtatgaggag aagaacatga tttcagttat
      901 cgtgccttgt tttaatgaag aagaggcaat tccctatttt tacgatgcta tggagaaagt
      961 gcgtaaggag atgggggaac aatttgagta tatttttgtc aatgatggtt caaaggatag
     1021 gacactaaag gttttacgcc aattatctgg tcaagaccga gctgttcgct atctttcctt
     1081 ttcaaggaat ttcgggaaag aagctgctct ctatgcaggt ctacaagctg cgcaaggtgg
     1141 gctagtgact gtcatggatg ttgatctgca agatccacct gaaatgttga tggaaatgaa
     1201 ggctatgttg gatggaaatc cagatttaga ttgcgttgga acccgtcgtg ttagtcgaga
     1261 tggtgagcca ccgattcgta gcttttttgc aaaattattc tacaaattga tgaataaaat
     1321 cagccaggtc gaggtagtag acggtgcccg tgatttccgt ctcatgcgtc gtcacatggt
     1381 agctgccatt ctatctgtgt ctgaatacaa tcgcttttcg aaaggaattt ttgcttgggt
     1441 aggattcgag acagaatact tgccttatga aaatgttgag agggtcgctg gtgaaactag
     1501 ttggtctttc tggaaattgc tttcttattc tattgaagga atcatcaatt tttcagatac
     1561 acctttgaat attgcctcct atacaggttt cttcaccttc ctattgtcgc tagttctaat
     1621 ggtttttgtg gttttcaaaa ccttggtgtt cggagatcct acaattggct ggccgtcgac
     1681 tatttgtatc atcctatttt tgggaggtct gcagttgatg accattggta ttctcggtaa
     1741 atatttggca aaagttttct tggaaacgaa gaaacgtccg atttatattg ttaaagagaa
     1801 aagttcaaac taggagcagt ttatggaaca ttcagcttgg cacgaattga taaaggcaca
     1861 gttgccagag cattattttg gtaaaatcaa tcagttttta gatcatgttt attctggtgg
     1921 aaccatttat ccgcctcgtg agaaggtatt tgctgccatt caaacaacgg atttggaaga
     1981 ggttaaagta gttattttgg gacaggaccc ctatcacgga cctggtcagg cacagggctt
     2041 gtcattttct gttccgaact cggtaccagc tccgccatct cttcaaaaca tcttaaaaga
     2101 attgacggat gatattggcg tcaagcaaga tcatgatttg acagcatggg cggaacaagg
     2161 tgtgcttttg ctcaatgctt gtttaactgt tccagcaggt caggcaaatg gacatgcagg
     2221 gcaaatctgg gagcctttta cggacgctgt tattaaggtg gtcaatagct tagaccagcc
     2281 tgttgtctat attctttggg gtgcttatgc tcgcaagaaa aaggcgttga taaccaatcc
     2341 aaaacatctg gttatcgaat ctgctcatcc aagtcctctt tcagcctatc gaggtttctt
     2401 tggaagcaag cctttctcac aagcaaatgc ctacttgact tcacaaggca gaacaggaat
     2461 tgattggctg cgatagtaga tggtgatgat ggctttggta ctacaaagga gaatatgaat
     2521 gttattagtg aaaaatggtc gtgtattgga tccgcaatct ggtttagaca aggtttgcga
     2581 catcttgatg gacggaagta agattgttaa gattgcggag tcgatttcag aagatgttga
     2641 gcaagaagtg attgatgcga caggattagt cgttgctcct ggtttggtcg atgttcatgt
     2701 gcattttcgg gagcctggtc agacccataa agaagatatt catacaggag ctctttctgc
     2761 agcagcgggt ggttttactt ctgttgtcat gatggctaac actaatccga cgatttcaaa
     2821 tgttgaaacc ttaaaagaag tattggattc cgctaaaaaa gaagctattc acatttatag
     2881 tgtggcaacc attacagatc atttcgatgg gcaaaatctg accgattttc ctgctttgct
     2941 agaagctgga gcggtggctt tttcggacga cggtattcct ttgacaaatg ctggcgtggt
     3001 tagaaaagct atgaaattgg ccaaagagca ggggtgtctc atcagtctgc atgaagaaga
     3061 ccctgacctg aatggtgtct tgggactcaa cgagcaagta gctgaaaaac attttcatgt
     3121 ttgtggagca acaggcgtag cagaatatag catggtcgct cgcgatgtca tgattgccta
     3181 tgaaacgggt gcgcgtgttc atatccagca tctatccaaa gccgagtcgg tcaaggtggt
     3241 tgaatttgtt caaggtctcg gagcaaacgt cacggcagaa gtagcaccac aacatttttc
     3301 acggactgag gacttacttc taacaaaagg tgccaatgct aagatgaacc cacctctacg
     3361 attagaaagt gatcgcttgg ctgtgattga aggattgaaa tcaggtgtta tctctgtcat
     3421 tgcgacggac catgctcctc atcacgcaga tgagaaaaat gtagaggatc ttacgcaagc
     3481 tccttcagga atgacaggct tggaaacctc gctttcactt ggtttgacgc atctggtgga
     3541 agaagggcat ctgacactcg tacaattgtt ggagaaaatg actattaatc cagccaagct
     3601 ctatggtctt gatgctggct atcttgctga aaatggccca gctgatcttg ttatttttga
     3661 cccaaatgca aatcggttgg tcacagcgga ttttgcctcg aagtctgcta attctccgtt
     3721 tgttggtgat agtctgaaag gacaggtcct ttacaccatt gcaaatggac aaatagtatt
     3781 tggtaaatag gaaatgagcg gattagatag ctaattcgct tatttcgaac tatttttaca
     3841 tgtaagcgat tttaatgttt ttgttttttg ttaaaaagtg tataatagag atataaaaaa
     3901 tgccgaagaa aggtctattt atgaaaaaga aaaaaatctt gttgcctgta atgtccacac
     3961 tcttgttggc tccatttgtt ttagctcaac aagtacaagc tgctgagaca acgactgcag
     4021 ctaccacaac caatcagcca gcaacgactg atgcaactgc tacggtacca acaacgtcag
     4081 ttgaaaatgt agcaacggag gaaactgttg ttcctgccgc ggaagaaaca gtagaggcag
     4141 tcattatcca cacaaacgac gttcacggtc gcattcttga agaaaagaat gtcatcggtg
     4201 acgctaaggc tgcggcagtc attgaagaag aacgtgccaa agtagaaaat acaattgtag
     4261 tagatgctgg tgatgccttc caagggcttc cgatttccaa ctctacaaaa ggtgaagacc
     4321 gcgccaatat catgaaccaa gtcggctatg atgcaatggc tgttggtaac catgaatttg
     4381 actttgggat ggatcaagca atcaagtaca aggaaacctt gaacttcccg ctattgagtg
     4441 ctaacactta cgttaatggc gctcgtgttt ttgaagcttc aactatcgtc gataaaactc
     4501 caactgttgt aggcgatgaa tttgtagtta tcggtgtaac aacacctgag actgctacaa
     4561 aaacccatcc taaaaatgtt gagggagtaa tatttaccga cccggttacg gaagtcaata
     4621 aagtgattga cgaagtggaa gcacgtgctc tagcagataa tcgtgtttac aagaactata
     4681 tcattctagc tcacctaggt gtcgattcta caacacctgt tgaatggaga ggttcaactc
     4741 ttgctgaagc actttctaaa aatagtaaat tagctggtaa acgtgttatt gttatcgatg
     4801 gtcattccca cacggtagaa gcgactacct atggagataa cgttacttat aatcaaacag
     4861 gctcttactt gaaaaatatt ggtaaagtaa ccttgaaatc cgataaatta ttgggtgaag
     4921 ctagtttgat ttctgctgag gatactaaga acgtgacgcc aaatgctaaa atcgtagcct
     4981 tggttgatga aattaaagca aaatatgaag ctgaaaatgc tcaagtagtt attgaaaata
     5041 acccagtgga attaaacgga gaccgctcaa acgtgcgtgt tcgtgaaacc aacttgggga
     5101 atgcagtgac ggatgcgatc tatgcttatg gtcaaacagg attttcaaac aaaactagcc
     5161 ttgctgtgac taacggtggt ggtctacgtg caacaattgc taaagatcag cctgttacaa
     5221 aaggtgatat tattgcagtc ttgccatttg gtaacattgt ttctcaaatc actgtgactg
     5281 gtcagcaaat ttatgatatg tttaccaagt ctttatcatc tacattgcaa gtgaatccag
     5341 aaactggcga gatgctttta gatgaaaatg gtatgccact ctttgaagct agtggtggat
     5401 tcctacacat ttcaggagca aatgtactct acgatccaac tcttcctgta gaagaacgtg
     5461 ttcttcttat cggtattctt aatccagaga ctggcgaata tgacgccttg gatcttgaaa
     5521 aaacgtacta tttagcaaca aatgacttct tggcagctgg gggtgatggt tacactatgc
     5581 ttggtggagc ccgtgaagaa ggaccgtcat tggacagtgt ctttgctgaa tacctaaaga
     5641 cagctgactt atcagcttat gaggttgtca acccatattc acgtatcatt cctattgata
     5701 cggatgaaga tggctcccca gactttatcg aaattttatt ggatactgat ccagaaaatc
     5761 catcctcaaa tccaggaact gttccatcct caaatccaga ttcaccatct aatcaagtac
     5821 aaaatacttc agcaacggac aagaaggtcc cagttgattc tccgaaagta ggagataaaa
     5881 aaccagaagt agcaagtcca gcaaaaacta caaaagcagg agtcttgcca aatactggtg
     5941 accagatgaa tctgacgctc agcctgtttg gtttaggtct tgcaggactg gccatggcag
     6001 taggtcgtag aaaagaaaat taatcaatca tctgaaaaca gggtcttcgg actctgtttt
     6061 tgactggagg aaacatgcaa actgtatttc aatatcaaaa agagggggat cgtgagcaga
     6121 ttagttctta cgttctgctt agcaactccc cacgtcgtaa acaattattg ggatttttac
     6181 aaccacaaat cgcatcagtt gaagtggatg agcgtggtat cgaagaacat tttatgaaac
     6241 aattcgctac agatgatttt ctcactcgag ctgcaaaaac ttgttgtgaa atttccaaag
     6301 caaaatcgga catggatttg gtaactggtc atctctacat ttctgcggat acaatcgtcg
     6361 tgtcagatgg gcaaattttt aacaagcctc aagatttgac agaagctgaa accatgttac
     6421 gttcctattt tggaaagagc catcacgttg taacatctgt ctgcctacgg acaagtcact
     6481 cactggatgt tttttatacg gttgcccaga ttgattttgt tgactattat ccagcccttg
     6541 aagaggttat tcaatcctat atccgtgaaa agcagccact cgacaaggca ggtgcctacg
     6601 gtattcagga gctggatcca cgatttgtgg cgggcatttc aggggatatt cacaccatta
     6661 ttggtctgcc cgtagccgaa gtttcccgca ggattttttc tgaagaaggt tttgaaaaat
     6721 agcagagctc aatagctagt ttgtggtata atagtggtcg aaaaggagag tttatgaccg
     6781 tcgacattga aagatacaag caattggccc aacagaagca aggagaacat cgaaaatttc
     6841 tagcaaattt gaagaaaaaa gcacctaaaa atttggatag aattgttcaa gatattcatg
     6901 ccgaagtatt ttctgaaatc aactgtacag agtgtgccaa ctgttgtaaa acgttgggac
     6961 cactctttac agaagcagat attacccgaa ttgccaagca tttgcgtatg aaacttccag
     7021 tttttgagga tatgtatttg cgtgtggatg aggacggaga taaggtattt caatccatgc
     7081 cctgtccctt ccttggaggc gataatttat gtagtatcta tgatgctcgt cccaaagcct
     7141 gtcgagaatt tccgcatact gaccgcaaga agatttatca aatcaacaat ttaacaataa
     7201 aaaatactct gatttgtccc gcagcctatc tctttgtcga aaagttacgg gagagaattt
     7261 aagaggaaca agtaagacaa aatattgatt ttctgctata ataataaaaa aacaagccgt
     7321 ttttacggct tttttcaatg aatcatattt aggaggaccc catggcaatt attcaatggt
     7381 ttccgggcca catgtcaaaa gctcgcaggc aggtgcagga gaacatcaag cacgttgatt
     7441 tcgtgaccat tttggtcgat gctcgcctgc ccctatctag ccaaaatcct atgctgacca
     7501 agattgtcgg cgacaagccc aagctcatga ttctcaacaa ggtcgatttg gcagaccctg
     7561 ttcgtacaaa agaatggcag agctactttg aaggtcaagg catccgtacc cttgccatca
     7621 actcaaaaga gcaagcgacg gtgaaaaagg tgaccgatgc agccaagagc ctgatgaaag
     7681 agaagattga acgcctccgc caaagaggga ttcaaaaaga aaccctgcgg accatgatta
     7741 tcggtattcc aaacgctgga aaatccaccc tcatgaaccg tctggcaggt aagaaaatcg
     7801 ccgtcgtcgg taacaaacca ggtgtgacga aaggccaaca gtggctcaaa tccaataaag
     7861 accttgaaat tcttgatacg ccaggaattc tttggcctaa gttcgaggac caagaagtcg
     7921 gtctcaagtt ggctttgact ggggctatca aggaccaact tttgcctatg gacgaagtca
     7981 ccatttttgg tttggactac ttcaaagcca actacccaga acgtctacaa gagcgattca
     8041 agggcatgga tttggagctg gaaacgcctg aactcatcat ggactggacc aagaaattgg
     8101 gcttccgtga tgattatgac cgtttttaca acctttttgt caaggacgtt cgagatgggc
     8161 gtttaggcac ttatacatta gacaaggtga gtgacttaga tggcaacgat taaggaagtg
     8221 actgctctgc tggctcaggt ggacagtctg gacagtccag tctgggacca actatctcag
     8281 gatgagcgag caggggtcca ggctgccatc aagaaacgcc gtaaggagtt ggaaaaagta
     8341 gcagcagaag acgctcgctt agaagctatg ctattttacg aaaaagacct ttatgacaat
     8401 ggggtggagt tcatcgctgg tatcgacgaa gtcggccgag ggcctctagc aggtcctgtg
     8461 gtggcagcgg cggtcatctt gcccaaaggg tgcaaaatcc gctacctcaa cgactccaaa
     8521 aaaatcccta agtccaagca cgaagccatc taccaagaag tcatggagcg agcggtagca
     8581 gtcggtgtgg gaataaaaga tgcagctgtc attgaccagg tcaatatcta cgaggcaacc
     8641 aagttagcca tgttggaagc tttggggcag ttgagccaag agcctgaaca ccttttgata
     8701 gacgctatga agttggatac gcccataccg caaacttcca tcatcaaggg agatgccaat
     8761 agcctgtcta tcgcagcagc ttcaatcgtt gccaaggtga cgcgggataa gatgatggcg
     8821 gactatgaca aggagttcgc tggctatggc ttcgccaaga atgctggcta tggaacggca
     8881 gagcatttgg aaggattgaa caagttaggc atcacgccca ttcaccgtaa gacctttgag
     8941 cccattaagt caatgctagc agggggaaac tagtcttgat agtctttttc tggttatttt
     9001 tagcggctat cggtctattt gctctcgtct atttctggga gcgacggtcg atttttatct
     9061 ccctatttgc cttgaacatc ctggtatggg ccttggcttg gattgtttca acaggtattt
     9121 tagaaaataa cgaaatcttg cggttattgg caatcgctct ggcaatgtta ttggctctag
     9181 ccttcttaag tggtccattt gtcttgctga ttaccctcta tctgaacggt tttcggattt
     9241 tgaagcgaga aggtgtccgt tttcataact ttttatcttt aggattggct atcggcttaa
     9301 ctttctatct ctttatcgcg ccgtctgtag caagcaccct ttctgctatc agttttttca
     9361 atatggtgtt tgtttatgta ggatttttgg tgtcctatgc cattatcatt agcatgctct
     9421 ataccacatc tagctttgtc aacttggtca atcttttccc tgggaagctt gattatgtgg
     9481 tggtgcttgg agctggattg attggtgata aggtgacgcc acttttggct tcgcggattg
     9541 acaaaggcat agcggtttac cagaaacatc ctggcagtaa gctcatcatg tcaggcggac
     9601 aaggtcctga tgaaataata gctgaaggtc aagctatggc aaattatgcc ttggagaaag
     9661 gagtgcctgc tgaagacatt ctcatcgaaa accaatcgac caatacagaa gaaaatttga
     9721 aatactccta tgccttgatg aaaccaggca gtcgatttgc ccttgtaacc aattactatc
     9781 atgttttcag agctctgcta ttggcccgac aattgaaaat caaatgtatc ggctatggag
     9841 caaaaaccaa attttacttt agccttaatg ccttcattcg tgaatttgta ggttatgtgg
     9901 tcatgagccg aaaggcgcat ttggtatttt tgggcatcgt gtcagtcctt tgcttgcttg
     9961 gtatgatagt tagtttaatg cattaaaaac agcctctaga acaatctaga agctgtttta
    10021 ttatagcata aaatagacaa tggccatata ttgtagtgct gaagccagta ggataaagag
    10081 atgccaaatc atgtggaagt aaggcttttt cttggcgtag aagagggctc caatagtata
    10141 agataaacca ccagccagca tcaaaattcc gaaaacaagt ccagtctttt gcagaatagc
    10201 tggcaagata aagacaacca accagcccat aaagagatag agaaaaaggc tgaatgtttc
    10261 attgattttt ttggcgaaaa ttttgtagag aatgccaaaa atggttaatc cccattgtaa
    10321 accaacaatt agatacccca accaaccacc gaccaaggat agggcaacag gtgtgtagct
    10381 cccagcgata gcgatgtaaa tcatactatg gtcaataatc ctcaggatgt atttgtgagt
    10441 agaagcatag ggcatggagt ggtagatgga agaggacaga aacatgagga aaagactgat
    10501 aacaaagata gacatgccga ccaccgctgt cacgttatag tcttgaaaag aatggatagc
    10561 agtaataggg agtaaaatca gcataagcaa ggccccaact gcatgtgtga cactgttagc
    10621 aacctcctct ccaaaggata gttgcaggct caattttaaa ctaggattca tggtgactcc
    10681 tttctaactc catagtgagt tgacgggttt tgtagtagag tttgatggat tgacaagcgt
    10741 agcgaatgat gtcaggcgtt tcttcatttt cctcgtttcg catgcagtca acaaaatgat
    10801 tgtataaggt ttctgaattg ctagactgga gaagaagatt taaggtctga ctgatttctt
    10861 gaatcgaaaa gacatttttt aagatagtca aggcaatcaa gcgggcaact tgctgttttt
    10921 gatatttttt cttaacaggt ttttcaatct gtttatgttt gacatagtta ttgatcatgg
    10981 cagcagtcaa tactcttcga aaatcaatat tatccgttgt caccttgcct tgatgaaccc
    11041 cagttctatc atcgacttcg tttcctaggc tactgttgat tttcattgag tataaactct
    11101 tctgttcaag gctttcctga gaattgacta cttgattaac atagagcaga acttggtcta
    11161 aatagaggtc caagtctggc agttcatgcc agtaggggat ggtttgtttc atgattatct
    11221 actctctttt
//
LOCUS       DASGAC010000056        11159 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.056, whole genome shotgun sequence.
ACCESSION   DASGAC010000056 DASGAC010000000
VERSION     DASGAC010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11159
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.056"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            52..2265
                     /gene="recJ"
                     /locus_tag="U1335_001139"
     CDS             52..2265
                     /gene="recJ"
                     /locus_tag="U1335_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEM5231626.1"
                     /translation="MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSA
                     EELHTFLQPSLEDLHDPYLLHDMDKAVERIRRAIEDYEQILIYGDYDADGMTSASILK
                     ETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
                     EMGVDVVVTDHHSMQETLPNAYAIVHPEHPDGNYPFKHLAGCGVAFKLACALLETVHA
                     DLLDLVAIGTIADMVSLTDENRVMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEET
                     VGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHQIALMIDSKNVERKDIVQAIYDEA
                     KSMLRQDRPVQVLAKEGWNPGVLGIVAGRLLEELQQPIIVLSIEDGRAKGSARSVEAV
                     DIFKALKDHQDLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVL
                     DEELDLEELTLDTLKSFEKLAPYGMDNKKPVFYLRDFQVESARTMGQNNAHLKLRITK
                     GAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVEGIQLYN
                     IRGKQHNLPEGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIT
                     KPYYLDGYGSREQFAKLYKTIYQFDEFDVRYKLKDLAGYLKIKDSLLVKMIQIFQELE
                     FVTITDGVMRVNKEAQKREISESQIYQELKKTVIQQELMALGTVQEIYEWLCGRV"
     gene            2244..3413
                     /locus_tag="U1335_001140"
     CDS             2244..3413
                     /locus_tag="U1335_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3114 domain-containing protein"
                     /protein_id="HEM5231627.1"
                     /translation="MAMWSRLMTVEALVVVGVIGTLLYTYWFIRQKGLLKNLEQITEI
                     KHALIELRRVGWSERAIKKVFLKQLLSLKQEDIPAFVQNFIKEATIFASTSFHQLIRV
                     DSRSLSQEKATALLEQSMNMLDFPEELSHGILPELLQKIDVNCPPHHPFWRYFAKLVD
                     KAFPVRELEVKRPLNRQVHQLRYLISYQQAFWVRQQFGKGKTDWQALIAYLRSLPRWS
                     YRLRDSARLHNKQLFGKKNQKTLPVNMKILIQFHSEFILNKDGQFALILEERPHVNGV
                     VNGASFNYARANNKRHRQLDMAPVGRQDPVFRKELLRSKMGVYLSPTRFRRYQKGRNE
                     VDWEQFYFNQQGSFSYGGHSRAACVANLRRRFAKDIGLKCTKKQFHGIMKSKNYF"
     gene            3428..3940
                     /locus_tag="U1335_001141"
     CDS             3428..3940
                     /locus_tag="U1335_001141"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001049318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEM5231628.1"
                     /translation="MNLKDYIATIPDYPKEGIEFRDISPLMADGNAYSYAIREIVQYA
                     TNKQIDMIVGPEARGFIVGCPVAFELGIGFAPVRKPGKLPREVISADYEKEYGVDTLT
                     MHADAIKPGQRVLIVDDLLATGGTVKATIEMIEKLGGIVAGCAFLIELDDLKGREAIG
                     DYDYKVLMHY"
     gene            4044..4985
                     /locus_tag="U1335_001142"
     CDS             4044..4985
                     /locus_tag="U1335_001142"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HEM5231629.1"
                     /translation="MPIKIEKSLPAVEILRKENIFVMDSDRASHQDIRPIKILILNLM
                     PQKIVTETQLLRLLANTPLQLEVEFLYMASHESKNTHSDHLKQFYKTFEQVRDSYFDG
                     LIVTGAPVENLPFEEVDYWQELTQVFDWSKTHVYSTLHICWGAQAGLYARYGVPKHSM
                     SRKLSGVYCQEVTNPTSPLMRGFDDEFRSPHSRYTEVREADIAHLSGLTILSQGPEVG
                     LSILASKDLREIYSFGHLEYDRDTLAKEYQRDCIAGKNPHLPENYFKEDDPTSKPSLS
                     WNLPAAQFFTNWVNYAVYQETPYDWHIFEQSAQSASL"
     gene            4995..5669
                     /locus_tag="U1335_001143"
     CDS             4995..5669
                     /locus_tag="U1335_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaD domain-containing protein"
                     /protein_id="HEM5231630.1"
                     /translation="MNYSQQFRQGHLVLPAAILFHYQELFPSADDFLIWQFFLYQNSS
                     AIESLAPSEIAQATGKTVAQVNQAIENLQDAGLLEFKTISIAGEIEMIFDALPAFEKL
                     DVLLTPKQAVEIVQPENDLKTLVGDFERELGRFLSPFEIEDLQKTIEDDKTSIDLVRA
                     ALKEAVFNNKTNWKYIQAILRNWRREGITTVAQVEAKNAEREIQTPKNVTVSSDFLDA
                     MDLWKD"
     gene            5671..6354
                     /locus_tag="U1335_001144"
     CDS             5671..6354
                     /locus_tag="U1335_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine-N(1))-methyltransferase"
                     /protein_id="HEM5231631.1"
                     /translation="METKLSKRLETVASFVPQGARLVDVGSDHAYLPLFLVEQGRIDF
                     AIAGEVVQGPYQSALQNVEQAGQTEKILVRLANGLGAFETSDQMTAVTIAGMGGRLIA
                     EILEAGKEKLATIERLILQPNNREDDVRRWLEKNGFRLVAEKILEENGKLYEVLVAES
                     GQMRLSEVERRFGPYLLEETSPVFVKKWRRELEKLSFALEQVPSERQGDRFAISQKIQ
                     QIQEVVHVS"
     gene            6344..7138
                     /locus_tag="U1335_001145"
     CDS             6344..7138
                     /locus_tag="U1335_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000881127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEM5231632.1"
                     /translation="MLASQVIERYQAFCPPSLAMEGDVKGLQIGTLNKEIQRVMVALD
                     IRETTVAEAIDKKVDLIIVKHAPIFRPIKDLVADNPQTKMYLDLIKHDIAVYVSHTDI
                     DVVEGGLNDWFCELLEIQDTTYLIETAEGQGLGRVGTIAEQTLEELALKVKSVFGLDA
                     VRLVTYGHQAQQYVNRVAICGGSGGSYYHEALAKGADVYITGDIYYHTGQDMLTQGLL
                     AIDPGHHIEALFIKKIADLLETWKAEEGWDVDIMPSTVSTNPFRHL"
     gene            7314..8138
                     /locus_tag="U1335_001146"
     CDS             7314..8138
                     /locus_tag="U1335_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HEM5231633.1"
                     /translation="MTWFTNQSVVLQALLGGLFTWFCTIVGSAVVFFFKTVSRRLLDT
                     MLGFAAGVMIAASFWSLLAPSIEYAESSYGNLAWIPAAVGFAAGGIFLRLVDAWVPHL
                     HLGNDKDKAEGGGEKDRKNLSKTALLFLAITIHNIPEGLAVGVTFGALASNYSPAAFI
                     GAIGLAIGIGIQNIPEGAALAIPIRTDGASRWKAFYWGSMSAIVEPIAAVIGAFAVTF
                     MTPILPYALSFAAGAMIFVVVEELIPESQTNGNTDIATLGLMAGFIIMMILDVALG"
     gene            8228..8536
                     /locus_tag="U1335_001147"
     CDS             8228..8536
                     /locus_tag="U1335_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016184036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM5231634.1"
                     /translation="MNYLEILKVLANSSRLHILHLLKNPRKHFVHKPQSGVDMVEVGV
                     CLEEIQRVSGLSQSTTSTYMNMMKKVGLVQVTRLGKYTYFKRNEEVLTSLSSYLVNDL
                     "
     gene            8661..9845
                     /locus_tag="U1335_001148"
     CDS             8661..9845
                     /locus_tag="U1335_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent flavin oxidoreductase"
                     /protein_id="HEM5231635.1"
                     /translation="MTKQLTDTVVLRHGAKLDSRIVMSPMLTYSGSEGGFATEDTLKY
                     YGSRSQAASLLITEFHYVSPTGGPSSRPGYPEQLGIQDDDHLDSITAIAQALKKDGNK
                     AILQIHHGGREARARGAKGHEVLAPSQLDFSFLPYPVREMPHEEIVEIIKDFGRATKR
                     AIDAGFDGVEIHGANHYLIQQFFSAFSNHRQDKWGGSLEKRMTFALEVVKEVKSVIAR
                     YAPKDFIIGYRLSPEEIHGTNIGYSYKESLALVAEIAREELDYISLSIWGGFEAGPAG
                     LNQSYGQLFKEVVGDQTQIIVVGSIFTEEDAQKAVSEHTDLIAIGRGTLIDPLFGQKI
                     KDGRGESIVSEISPEQVSATSWTSGLHEAFTREDSLGLPNLLGQESILHLHQGIYDPV
                     EH"
     gene            complement(10250..11125)
                     /locus_tag="U1335_001149"
     CDS             complement(10250..11125)
                     /locus_tag="U1335_001149"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231636.1"
                     /translation="MAKKLPTIRHHETNQKQTQTNNNLFVGLGLLGGISILSGQTHFL
                     FPILVLSALAYSTFFLIHRNTAKSTKNTALRLQNLKESISHIEQELKQLNNYLKSKNY
                     SQYALLAQELLPQLTMIREETSELKYQLDTDISSAIIQQTIQEEEKILKQLKLLDLIA
                     PSSFILEETKKILSIAPELATTYQNVQNDHIEILEQLKNLENAEELRVIHEIHMKHYN
                     DILDGYLKIKENPKNFYSAEERLAQSKLALEKFDADLDETLRKFNERQLNEFEISLRM
                     MGKDANGEDLLAEKY"
BASE COUNT         3244 a         2061 c         2559 g         3295 t
ORIGIN      
        1 cggaaaagtt acaggttact tgtgattttg agtattaagg agtgaaaaaa cgtgataaaa
       61 cctaattatg actggcaatt attaaccggt ttttctgatg aacaatttat caaaattgct
      121 aaaaaagaag gagtggaccc ggtagcggct aagttgctgt atgaacgtgg catccattcg
      181 gcggaagaat tgcatacttt cttacaacca agcttagaag accttcacga tccctattta
      241 ctacatgata tggacaaggc ggtagagcgg atccgtcggg ccattgaaga ttatgaacaa
      301 atcttaattt atggggatta tgatgcggac gggatgacat cggcatcaat cctcaaggaa
      361 accttggaag aaatgggggc agaagtccag gtctatcttc caaaccgctt tactgatgga
      421 tatggtccca atcaatcggt ttacaagtat tttatcgagc aacagggcat ttctctgatt
      481 gtgacggtgg ataatggcgt agcgggtcat gaagccattg cctatgccca ggaaatgggt
      541 gtcgatgtgg ttgtgacgga ccaccattcc atgcaggaaa cccttcccaa tgcctatgcg
      601 attgtacatc cagagcatcc cgatggaaat tatcccttca aacatttggc gggctgcggc
      661 gtggctttta aattggcctg tgctcttctt gaaacggttc atgcagactt actggatttg
      721 gtcgcaattg gcaccatcgc tgatatggtt agcttgaccg atgagaatcg tgtcatggtc
      781 aaatatggtc tctcgcttct caaacagact gagcgagcag gtttacaaga gttgataaag
      841 atagctggta ttgacataga cagtattgat gaagaaacag ttggtttcca acttgctccg
      901 aggttgaatg cccttggtcg actcgacgac cctaatccag ccatcgaatt actgactggt
      961 tttgatgacg aagaggccca tcaaattgcc ctcatgattg atagtaagaa cgtcgagcgc
     1021 aaggatatcg ttcaagccat ctatgatgag gccaagtcca tgctccgtca ggatagacct
     1081 gttcaagttc tggctaaaga aggttggaac ccaggtgttt tagggattgt agcaggacgc
     1141 ctactagaag aattgcagca acccattatc gtcttgtcca ttgaggacgg gcgtgctaaa
     1201 ggctctgccc gttcggttga agcagttgac attttcaagg cccttaaaga tcatcaggac
     1261 ctatttatcg cctttggtgg tcatgctggt gcagcaggta tgaccttgga agttgacaaa
     1321 cttgaagagc ttgctctaac cttgacagac tacattatcg aaaataaatt ggatttatcc
     1381 agcaagtctt cactggtctt agatgaagaa ttggatttag aggaattaac cctagatact
     1441 ctaaaatctt tcgagaagct tgcgccttat ggcatggata ataaaaagcc tgtattctac
     1501 ctcagagact ttcaggtgga atcagcaaga actatggggc agaataatgc ccatttgaaa
     1561 ctacgcatta ctaaaggtgc tgctggattt gatgtcgttg cttttggtaa gggcaatcta
     1621 gccttggaat tttcacaggc caagggctta gaactagctg tcaccttgtc tgtcaatcaa
     1681 tggaatggca atactagtct tcagctcatg ttggttgacg cccgtgtaga aggtattcag
     1741 ctctacaata ttcgtggtaa acagcacaat ctgccagaag gagtgcccat tttggacatt
     1801 gaaaatccag tagcagataa caaagcaatt gtcttggcta acttgcctga ggacctcagt
     1861 agtctgcgta gctattttca ggaaagagaa tttgaagcca tttattttaa aaatgaaatt
     1921 accaaaccgt actatctaga tggttatggt agccgagaac aattcgctaa attgtataag
     1981 actatttatc aatttgatga gtttgatgtt cgctacaaac tgaaagattt ggctggttac
     2041 ttaaaaatta aggacagtct attggttaaa atgattcaga ttttccaaga attagaattt
     2101 gtcacgatta cggatggggt catgcgggtc aacaaagagg cacagaagcg agagatttca
     2161 gaaagtcaaa tatatcaaga attgaaaaaa acagttatcc aacaagagtt gatggcgctt
     2221 ggcaccgttc aggaaattta tgaatggcta tgtggtcgcg tttgatgaca gtagaagctc
     2281 tggttgttgt tggagtgatt ggaacgcttc tctacactta ttggtttatc aggcaaaaag
     2341 gtttgttgaa aaatcttgaa cagataaccg aaataaagca cgcactgatt gaattacggc
     2401 gagtaggatg gtcagaaaga gccatcaaaa aggttttcct gaaacaactg ttgtctctaa
     2461 aacaagaaga catcccagca tttgttcaaa atttcataaa agaagctact atttttgcct
     2521 cgactagttt tcatcagttg ataagagttg acagtcgctc tttaagccaa gagaaagcga
     2581 cggctttatt ggagcaaagt atgaatatgt tagattttcc tgaggaatta agtcacggga
     2641 tattacctga acttttgcag aagatagatg tgaattgtcc tccacaccat ccgttttggc
     2701 ggtactttgc taagctagtt gataaggctt ttccagttcg ggaattagaa gtcaaacggc
     2761 cgttaaacag acaggtccat cagctgcgct accttatttc ctatcagcag gctttttggg
     2821 tgcgtcagca gtttggaaaa ggaaaaacag attggcaggc tctaatagcc tatttacgta
     2881 gcctacctcg gtggtcttat cgcttacgag attctgcccg cctgcacaat aaacaactgt
     2941 tcggcaagaa aaatcagaag accttgccag tcaatatgaa gattttgatt caatttcaca
     3001 gcgaattcat cctaaataaa gatggacaat ttgccctgat tttagaagaa cgacctcatg
     3061 tcaatggcgt ggtaaacggg gcttccttta attatgccag agctaataat aagcgtcata
     3121 gacaacttga tatggctcca gttggcaggc aggatcctgt ttttcggaaa gaattgctac
     3181 gctcaaagat gggagtctat ttatctccta ctcgctttcg tcgctaccaa aaaggaagaa
     3241 atgaggttga ctgggagcag ttttacttta atcagcaagg aagcttttcc tatggtggac
     3301 atagtagggc agcttgtgtg gcgaatttga ggagacgatt tgctaaagat ataggtctga
     3361 aatgtaccaa aaaacaattt catggtataa tgaagagtaa aaattatttt taaaaagaga
     3421 gagacaaatg aacttaaaag attacattgc aaccattcca gactatccaa aagaaggcat
     3481 tgaattccgc gacattagtc ccctaatggc agacggaaat gcttatagct acgctattcg
     3541 tgagattgtg caatatgcga ctaataagca gattgatatg attgttgggc cagaggcgcg
     3601 tggtttcatc gttggatgtc cagttgcctt tgaattggga atcggttttg caccagttcg
     3661 taagccaggt aagttaccac gtgaggttat ttcagctgac tatgaaaaag aatatggtgt
     3721 agatacattg acgatgcatg cagacgcaat caaaccagga caacgtgtct tgattgtcga
     3781 tgacttgttg gcgactggtg gtactgtaaa agcaacgatc gaaatgattg aaaagcttgg
     3841 cggtatcgtt gctggctgtg ccttcttgat tgagctagat gatttgaaag gccgcgaagc
     3901 aatcggtgat tacgactaca aggttttgat gcactattaa tctaaggtta tagccaaaac
     3961 ttataactgg tcctattttt attctaattg aattgcatag caacctgtct tataataaat
     4021 ataagaaaat tgggaggttg cttatgccaa ttaaaattga aaaatcatta ccagcagttg
     4081 aaattttgag aaaagagaat atttttgtga tggatagtga ccgagctagt catcaggaca
     4141 ttcgtcctat caaaatcctt attctcaatc tcatgccaca gaagatagtg acggagactc
     4201 agttgctccg tcttttggct aacactcctt tacagctaga ggttgaattt ctctacatgg
     4261 ctagtcacga gtccaaaaat acacactcgg accatttgaa gcagttttat aagacttttg
     4321 agcaggtcag ggatagctat tttgatgggc tcatcgtgac aggagcacca gttgaaaact
     4381 taccttttga ggaagttgat tactggcaag aacttactca agtttttgat tggtcaaaaa
     4441 cacatgttta ttcaacattg cacatttgtt ggggtgcaca ggcaggtttg tatgcgcgct
     4501 atggtgtacc caaacacagt atgtctcgaa aactatcagg agtatattgt caagaagtga
     4561 ctaatccaac tagccctctt atgcgtggat ttgacgatga atttcgttca ccacactccc
     4621 gttatacgga agtaagggag gcagatattg cccatctgag tgggttgacg attttatcac
     4681 aaggtccaga agttggccta tccattttag ccagcaagga tttaagagaa atttatagtt
     4741 ttggacattt agagtatgat agggatacac tagctaagga ataccaacgt gattgtatag
     4801 ctggaaaaaa tccccattta ccggaaaatt atttcaaaga agatgaccct acaagcaaac
     4861 catctctctc ttggaattta ccagcagcac aattctttac caactgggta aattatgctg
     4921 tctatcaaga aactccatac gactggcata tctttgaaca atcagcccag tcagctagtc
     4981 tttaaagagg aagtatgaac tattcacagc aatttcgtca gggacatttg gtcctgccag
     5041 cagcaatatt attccactat caagagcttt ttccgtcggc agatgatttt ttgatttggc
     5101 agtttttctt atatcaaaat tcttcagcta tcgaatcatt agcgcctagt gagattgctc
     5161 aagctactgg taaaacagtt gcccaggtca atcaagctat tgaaaatctc caagatgctg
     5221 gactcttaga atttaagaca atcagtattg ctggtgaaat tgaaatgata ttcgatgcgc
     5281 ttcctgcttt tgaaaaatta gatgttctgt taactccaaa acaggcagtt gagattgtgc
     5341 agccagagaa tgatttgaag accttggtgg gtgattttga acgtgaattg ggccgctttt
     5401 tatcgccgtt tgaaattgaa gatttgcaga agactattga ggatgacaaa acttcgattg
     5461 atttggttcg tgcagccttg aaagaagctg tttttaacaa caaaacaaat tggaaatata
     5521 tccaagctat tctacgaaac tggcgccgtg agggaattac tacagttgcg caagtagaag
     5581 cgaaaaatgc agaaagagaa attcagactc ctaagaatgt aactgtttca agtgactttc
     5641 ttgatgcaat ggatctctgg aaagattgat atggaaacaa aattatctaa aaggctggaa
     5701 acagtcgcaa gttttgtccc acaaggggca cgtttagttg atgtagggag tgaccatgct
     5761 tatctccctc tttttttggt agagcagggg cgtattgatt ttgccattgc gggggaagtc
     5821 gttcaaggtc cctatcagtc agcgcttcag aatgtagagc aggcgggaca aacagaaaaa
     5881 attctagtcc gtttagcaaa tggcttaggt gcgtttgaga cgtctgacca gatgactgcc
     5941 gtgaccatag caggtatggg gggacgcttg attgcggaaa tcttagaagc aggaaaagaa
     6001 aagcttgcga ccattgaacg tctgatactc cagccaaata atcgtgaaga tgatgtgcgt
     6061 cgatggttgg aaaaaaatgg ttttagattg gttgctgaaa agattctgga agaaaatggc
     6121 aagttatatg aagtcctcgt tgcagaatca ggacagatga gattgtcaga agttgaacgt
     6181 cgttttggtc cctatctact agaggagacc tcaccagttt tcgtcaaaaa gtggagaaga
     6241 gaacttgaaa aattaagttt tgctttggaa caagttccat ctgaacgcca aggtgaccgc
     6301 tttgccattt cccaaaagat ccaacaaatt caggaggtag tccatgttag ctagtcaggt
     6361 tattgagcgc tatcaagcct tttgtccccc ttctttggct atggaaggcg atgtcaaagg
     6421 gctgcaaatc ggtaccctta ataaagagat tcaacgtgtc atggtggctc tggatattcg
     6481 tgagacaaca gtagcagagg cgattgataa aaaggtggat ttgattatcg tcaagcacgc
     6541 tccgattttt cgtccaataa aggatttggt ggcggacaat ccacaaacta aaatgtatct
     6601 tgatttgatt aagcatgata ttgcagtcta tgttagtcat acagatattg atgtggttga
     6661 gggggggctc aacgactggt tctgtgaact attagaaatt caagatacta cctacttgat
     6721 tgaaactgca gaggggcagg ggcttggccg tgtggggaca atagcagagc agactttgga
     6781 agaattggct ttgaaagtca agtctgtctt tggtctagat gctgtccgtc tggtgaccta
     6841 tggtcatcaa gctcagcagt atgtcaaccg tgtggcaatc tgtggtggta gtggcggctc
     6901 ttactaccat gaagcccttg ccaagggagc agatgtttac ataacaggcg atatctacta
     6961 ccatacgggt caggacatgc taacccaggg cttgctggct attgatccag gccaccatat
     7021 cgaagccttg tttatcaaga aaattgcaga tttgctggaa acttggaaag cagaagaggg
     7081 ctgggatgtg gacattatgc cttcaaccgt ttcaaccaat ccatttaggc atttgtgata
     7141 aattaatcag cacttgattg tggaaagacc aagacgacat ttaatgtagt tttaggtctt
     7201 ttatttttta gatattttct tatttattta agtgaaaaag cttgaatttt ataataaatt
     7261 agggtatctt aattcatagg atatgcaaga ttaaacagga taggatgtta gttatgactt
     7321 ggtttactaa tcagtctgta gttctacagg ctttgctagg tggtttattc acatggtttt
     7381 gtacgattgt ggggtctgcc gttgtatttt tctttaagac agttagtcgt cgtttgctag
     7441 ataccatgct aggctttgca gctggtgtta tgattgcggc ttctttttgg tctttattag
     7501 ccccatcgat tgagtatgct gaaagttcat acggcaatct ggcttggata ccggcagcag
     7561 taggttttgc agcaggtggt atttttttac gcttggtaga tgcctgggtt ccgcatttgc
     7621 atttgggaaa tgataaagat aaggcagaag gtggtggtga gaaggataga aaaaatctat
     7681 ccaaaacagc cctgctcttc ttagctatta caattcacaa tattcctgaa ggtttggcgg
     7741 tcggtgtgac atttggtgca cttgcttcta actatagtcc agcagctttt atcggcgcaa
     7801 tcggtcttgc tattgggatt ggtatacaaa atattcctga aggggcagcc ttggctattc
     7861 caattcgtac agacggcgca tctaggtgga aagcttttta ctggggatca atgtcagcaa
     7921 ttgtcgagcc gattgcagca gtcatcgggg cttttgcggt cacctttatg acacctattt
     7981 taccttatgc cctctccttt gcggcaggag ccatgatttt tgtcgtcgta gaagagctca
     8041 ttccagaatc gcagacaaac ggcaatacgg atattgcaac tctgggctta atggctggtt
     8101 ttatcatcat gatgatctta gatgtggcac tgggttaagg cagcacttac aagccaaact
     8161 ctgacagttg gtttttccaa aagtaaaatt tctaaaaaaa tgagctcttt tatgataaaa
     8221 taagactatg aattacttag aaatcttaaa ggtcttggcc aattcaagtc gactacatat
     8281 cttacatcta ttaaaaaatc caagaaaaca tttcgttcac aagccccaaa gtggagtgga
     8341 tatggtagaa gtgggagtct gtttggagga gattcaaaga gtctcaggtc tcagccagtc
     8401 taccacctcc acctatatga acatgatgaa aaaagtgggc ctggttcagg taactcgatt
     8461 agggaagtac acatatttta aacggaatga ggaagtgctg acatcactat cgagttattt
     8521 agtaaatgat ttataaacca gacttcgatc tggttttttg cttgcagaac aaatcgagtt
     8581 ttttcgattt atacttgtct tttccaactg agtgtgctaa actattcata tctaaaaaat
     8641 tgaatatgag aggtgctcag atgaccaaac agttgacaga tacagtagtc ttacgccacg
     8701 gagctaaatt ggacagtcga attgtcatgt ctcctatgtt gacctattca ggcagcgagg
     8761 gcggttttgc gactgaggat acattaaaat attatgggtc taggtcccag gcggccagtc
     8821 tccttatcac cgaatttcat tatgtcagcc caacaggcgg tcccagttct agacctggct
     8881 atccagagca gctgggaatc caggatgatg atcatctgga ctccatcaca gccattgccc
     8941 aggccttgaa aaaagatgga aataaggcga ttttgcagat tcatcatggt ggtcgagagg
     9001 cccgagctag aggagccaaa ggacatgaag tgttggcacc gagtcaactg gatttctcct
     9061 tcttgcccta tcctgttcgg gagatgcccc atgaagaaat cgtggaaatc atcaaggatt
     9121 ttggaagagc tacaaagagg gctattgatg caggctttga tggcgttgaa atccatggtg
     9181 ccaaccacta tctgatccaa caattcttct cagccttctc caaccatcgt caggataaat
     9241 ggggtggcag tcttgagaaa cgaatgacct ttgccctaga agtggtcaag gaagtgaaat
     9301 ccgtcattgc ccgctatgct cccaaggatt ttattatcgg ctatcgtctt tcgcctgagg
     9361 aaatccatgg taccaacatt ggttattcct ataaggaatc cctggctttg gttgctgaga
     9421 tagccaggga agaattggat tatatcagtc tttccatttg gggtggcttc gaggctggtc
     9481 cagcaggcct caatcaatct tatggtcagc ttttcaagga agtggtaggt gaccaaaccc
     9541 aaatcatcgt tgtgggctct atatttacgg aagaggatgc tcaaaaagcg gtatctgaac
     9601 acactgattt gattgcgatt ggtcgaggaa cccttattga ccctcttttt ggtcaaaaaa
     9661 taaaagatgg aagaggcgaa tctatcgtat cagagatttc tcctgagcaa gtttcagcca
     9721 cctcatggac aagtggctta catgaagcct ttactagaga ggattcctta ggactgccaa
     9781 atctactcgg ccaggaatcg attttacatt tgcatcaagg gatttatgat ccagtggaac
     9841 attgataaaa gaggggttct cctctttttt gctgccacgg gcctaccacg ccaaacgcat
     9901 gaagaaaatt tcgttttcgg aaatcatatt ttcaatattt acatcagttt tttattgaga
     9961 aaagtgatat aatagctttt aaaatgaggg atcacccccg ttaaagtgta agttttatgg
    10021 aaatattttg aaaaaatgca tgtaactaga aaatagtggc tctttgtcaa ctgtagttgg
    10081 tagacgaaaa gctaacacct agagaggacg aaattcgttc tctctttctt tttatatcag
    10141 tatactggag gaatgagtga ttgaatagat accttgttat tgggcggtta cgttaaatct
    10201 tatagaaaaa taggcaagac ctttgattca ggtcttgcct attaacttat tagtatttct
    10261 ctgctaaaag gtcttcaccg ttcgcatctt ttcccatcat tcttagacta atctcaaatt
    10321 cattcaactg ccgttcattg aattttcgta aagtttcatc taaatcagca tcgaattttt
    10381 caagtgcaag ctttgattga gccaagcgtt cctcggccga gtagaaattt ttgggattct
    10441 cctttatttt gagatagcca tcgagaatat cgttataatg tttcatatga atctcgtgga
    10501 tgactctcaa ttcttccgca ttttcaagat tcttcaattg ttcaagaatt tcaatatgat
    10561 cattttggac attctgatag gtagtagcta attcaggtgc aatacttagg atttttttcg
    10621 tttcttctaa aatgaaggaa gaaggagcta tcagatcaag tagttttaac tgctttaaaa
    10681 ttttttcctc ttcttgaatg gtttgttgga taatcgccga agaaatatcg gtatccaact
    10741 gatatttaag ttccgatgtt tcctctctaa tcattgttaa ctgaggtaac aactcttggg
    10801 caagaagcgc atactgacta taattttttg attttaaata gttgttcagt tgtttcaatt
    10861 cctgctcgat atgtgaaatg ctctccttaa gattttgcaa tcgaagagct gtattctttg
    10921 tagacttggc agtgttacga tggataagaa aaaacgtact gtaagccagg gctgaaagta
    10981 ctagtatagg aaacaaaaag tgagtctggc cacttaggat ggaaattcca ccgagtagac
    11041 cgaggccaac aaatagattg ttatttgtct gagtctgttt ttgattggtt tcgtggtggc
    11101 gaatcgtggg aagtttctta gccatggatt ttcctttcta gagggtgtag atatattcc
//
LOCUS       DASGAC010000057        11026 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.057, whole genome shotgun sequence.
ACCESSION   DASGAC010000057 DASGAC010000000
VERSION     DASGAC010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11026)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11026)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11026
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.057"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            46..2904
                     /locus_tag="U1335_001150"
     CDS             46..2904
                     /locus_tag="U1335_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G5 domain-containing protein"
                     /protein_id="HEM5231637.1"
                     /translation="MVYSRTQRIQEEKKQRLRYGIRKFTGLGAASALLGVGLLTSLSV
                     HAQTKTAEVRYDYVTTEELTEAEKKAIFTELPAQVTEDVNYYLVYRKVGSSILPQTGE
                     STGVLAGAIGAGLLLVGVTVGRKNQRMVRSAMTLTLVGGSLVFTSVSAVTVAQLAQYG
                     QAQTLTVGAALPDGKISIAGYEFVGYLEGKKQSRETSSALPMGSIDKAEENENLLVQP
                     TQPADENKSDIPTESIPSEDKVTDASAEQKPSEDKVEEVPAESKPAEKPVEETGGGQV
                     IGTEDKVISETEKPVQPEIPAPVEKPAVPGETETTVTPGEEKPVSPELPTNPAEPDRP
                     VDTVRTDVEKQVTVIKYGTSYVKDTSLPAGESKVLTQGVDGKQTVTTKVTYTNNVETA
                     REIVATETIEPVTEVIAYNDEVSKNREELVESLTTISFATERRANADLEVGSERVLVA
                     GVNGQTKTLTKKVYDSTGAVISEEVVSTEVIAQPVTQVIEYGTKPKSVVETTEETKVT
                     ELDYTVETRQNPDLEKGQTRTLTEGRKGTLTQTYRITKTDGNETARELVKEERVEPVN
                     EIIEVGTKAVVRYQTRQETSVIPFTTETRQVDSLFEGESRELVAGVDGQQIQTYKDTY
                     VDGVKVASEMVGQPEVIQPIKRIVEVGIKKEETSQVLTETEVLAYTSIKEEDPNLPEG
                     ETKIKVQGVNGERKVRITRVTNNRTGQVSETREVISETAPVNEVLVVGTKPASTSLLD
                     KKTLTLDEFMSLTEEQQDAFIAKKGTVPGTTIRTGATKDTLEKVEQLINLDKLNAEFV
                     SLLNAARAAEGLSAVTYAGQGSDAQNAATARANEMADHGSLRYQGTVAGAHMRPDGSK
                     WTTIYTAEQTARQGWRGENALQMGSSLSAYSAINESRIANNLFTEWMNSADHKAVMMK
                     NLDNLQVAVGIGLNDKAIETTFNQGVTVAMLELVEPKP"
     gene            2963..4051
                     /locus_tag="U1335_001151"
     CDS             2963..4051
                     /locus_tag="U1335_001151"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231638.1"
                     /translation="MKKNLLKLLVAISTLSLVACGQTEQTSQVNQETSSSTQKVTESS
                     STTKSEKVVSSPDDFPRVDEHTEIDAEAKQAVKDYVGFYSGIVDIPSAETSHASDDNL
                     TVFYKIDFAINEDGSYELYLERDVPGSQIGHLYVTKDNQMNAKLKVGELHQGKFELEY
                     GQLLLSEGPSLTQGFLGEDGELLPMYGFYGSDTPTNYLGVTDNDEIVVKDGKVQATFY
                     LSAYTDKATVIDLEKQTTRPTSLKYSTEQISQYSAEHYKELGMASEVTYQYNTVNEFL
                     QALRLSHTTQKKTLEKIKVVDGSSLTGYYTSDNKEIKNIKFAIFDGISNSYYVYTGDK
                     VYQLENEHEAKEIKVIPELIDYISYSVG"
     gene            4064..4411
                     /locus_tag="U1335_001152"
     CDS             4064..4411
                     /locus_tag="U1335_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231639.1"
                     /translation="MKKLLTLILTSVTVFFLVACGAKNDNGTYTYSREKDGTTYTVII
                     KIENNTGILTFEEKGEDGQTQSEEQGLTVDQERKTLTAENDNSTVDYEIVDGVLTLDT
                     LDSTLANAEFTKE"
     gene            4543..5889
                     /locus_tag="U1335_001153"
     CDS             4543..5889
                     /locus_tag="U1335_001153"
                     /inference="COORDINATES: protein motif:HMM:NF018584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
                     /protein_id="HEM5231640.1"
                     /translation="MQSEYVLLCSPYRYSSVFANSVNRQFIEKELMSVVMPGVNIMTR
                     GLLRTMLETNYGITDYSSLKEEIDKLEDGRYHALEDVSSFIDGIGTPDVKDFYLSLNS
                     LTGSQLIKGFDDCRIIDVLTKSYATRLITKEEFEELFTKQTERIKNSYQTWEQYLASC
                     VMGKLLQYVPSSETITSVEEYVVDVYSFCIAPTNVFSYGTFWANHELANLTALLENFL
                     PEEIVKELKSRQDRVDYKGEIPGLTAPSNDLLASLEGTSIDPTFIDYERYQYLSELAD
                     YVFWTPLIENNLEWMIAEKNLQEQDTILLPKEYASLYSARVFWYHYPSYKELHEEHIF
                     AMFEGTLSLNLIFTEEAVYTFKKKLFGKPALVRIPWEQVELSSSLNLWMEESKIHFGK
                     KTISNVSPVLSEIGLNSKAIDDLDSQERKALENEWQQKMNQFLEGIPQRIREFKGK"
     gene            6013..7074
                     /locus_tag="U1335_001154"
     CDS             6013..7074
                     /locus_tag="U1335_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEM5231641.1"
                     /translation="MQTRLEKFEAKLAQSDVDGILVTGQNNIYYLTGFWGTEATVFIS
                     GKHRLFVTDSRYTLIAKASVKGFDIIESRFALEEIAKMIKEDGLETIGFDSEVTYGFY
                     QNLTSIFEGYQLVAMSNFIEDLRMIKDEKEIATIRRACQISDQAFIDVLDFIKPGQTT
                     EMDVNHFLDHRMRQLGAEGASFEFIVASGYRSAMPHGRASEKVIQAGETLTLDFGCYY
                     QHYVSDMTRTIHIGHVTDQEREIYDVVLRANKALIEQAKEGVTYREFDAIPREIINAA
                     GYGANFTHGIGHGIGLDIHEYPYFGKSDETIKAGMVLTDEPGIYLDDKYGVRIEDDLL
                     ITENGCEVLTLAPKELIVI"
     gene            7138..7695
                     /gene="efp"
                     /locus_tag="U1335_001155"
     CDS             7138..7695
                     /gene="efp"
                     /locus_tag="U1335_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEM5231642.1"
                     /translation="MIEASKLRAGMTFEAEGKLIKVLDASHHKPGKGNTIMRMKLRDV
                     RTGSTFDTTYRPDEKFEQAIIETVPAQYLYQMDDTAYFMNTETYDQYEIPVATIKEEL
                     LYILENSDVKIQFYGTEVIGVTVPTTVELVVAETQPSIKGATVTGSGKPATMETGLVV
                     NVPDFIEAGQKLVINTAEGTYVSRA"
     gene            7723..8115
                     /locus_tag="U1335_001156"
     CDS             7723..8115
                     /locus_tag="U1335_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HEM5231643.1"
                     /translation="MTTEYQGEIVIAPRVLEVITGIAAAKVDGVHSLQNKRVADSWSK
                     TSLNKGVYLETDEEGRVTADIYVYLEYGVNVPAVSMDIQRAVKTAVYNYAEVQVVAVN
                     IHVSGIVPDKTPKPALKDLFGEDFLDEE"
     gene            8105..8524
                     /gene="nusB"
                     /locus_tag="U1335_001157"
     CDS             8105..8524
                     /gene="nusB"
                     /locus_tag="U1335_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEM5231644.1"
                     /translation="MKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDREEEQEGV
                     EIPLFLLNLVNGVADYRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEET
                     PDRVAVNEAIELAKEFSDESSAKFINGVLSQFIKEEA"
     gene            complement(8604..9569)
                     /locus_tag="U1335_001158"
     CDS             complement(8604..9569)
                     /locus_tag="U1335_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002929307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5231645.1"
                     /translation="MVAKLTDVAQLAGVSPTTVSRVINKKGYLSEKTIRNVEEAMREL
                     GYKPNNLARSLQGKSAKLVGLIFPTINNIFYSELISHLEKELFDRGYKTIICNSQHES
                     DKEREYLEMLAANQVDGIISGSHNLGIQDYDRVVAPIIAFDRNLSPSIPIVSSDNFAG
                     GVLAAQTLQKAGCHNPLMITGNDDSNSPTGLRQVGFTSILNKADVFHISSDFSPVRKE
                     MEIRAILEKQKPDGIFVSGDATAMLVWNVIRSLKLSIPEDIKLIGYDGTSFIENYYPQ
                     LTTIKQPLTEIARLLVELLVDKIEGKKLTKTDYILPISLLAGASI"
     gene            complement(9550..11004)
                     /locus_tag="U1335_001159"
     CDS             complement(9550..11004)
                     /locus_tag="U1335_001159"
                     /EC_number="3.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000455313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sucrose-6-phosphate hydrolase"
                     /protein_id="HEM5231646.1"
                     /translation="MAFTTEERYRAYADWTSEYIEKIKKNTESSPWRTNFHIETPHGL
                     LNDPNGFSYFNGKWTLFYQYFPFGAAHGLKSWVHTESTDLVHFEETGTVMYPDTPLDS
                     HGAYSGSAMEFGDKLFLFYTGNVRDENWVRHPYQIGALMDKDGKIEKIDKVLIKQPED
                     TTDHFRDPQIFNYKGQYYAIVGGQNLNKKGIVKLYKAENNDYLNWSYVGDLDFANDMT
                     AYMMECPNIAFVGEQPILLYCPQGLDKEVLDYGNIYPNMYKIGQSFDPEAASIVEPSE
                     LINLDYGFECYATQAFNAPDGRTLSVSWLALPDVEYPTDAYDYQGCLSLVKELTIKDG
                     KLYQYPVDAITSLRKEAQPFSAQKETNNVYELELDFSAGTKHEIVLFANEAEKGLVLS
                     VDTEQGQITLDRGNCGQPFALDFGTSRSCEISPGALTANIFIDKSVFEIFINKGEKVF
                     SGRVFPDADQSGIVITTGNPTGTYYHLDYGRKTN"
BASE COUNT         3458 a         2083 c         2491 g         2994 t
ORIGIN      
        1 atagtaaaat attttggaag actatttcat aaaagggaga attatatggt ttatagtaga
       61 actcagcgca tccaagaaga aaagaagcag cgtttacgat atgggattcg taaatttaca
      121 ggcttaggag ccgcatctgc tctattagga gtaggtttac taacaagttt atcggttcat
      181 gcacagacta agacggcaga ggttcgttat gattatgtaa cgactgagga attgactgag
      241 gcagagaaaa aggcgatttt tacagagctt ccagctcagg tgacagaaga tgtgaactac
      301 tatcttgtgt atagaaaagt agggtcttca attttgccac agacaggaga aagcacaggt
      361 gtattagctg gagctattgg ggcaggcttg ctactggttg gtgtaactgt tggtcggaaa
      421 aatcaacgga tggttcgctc agcaatgacc ttgaccttgg taggaggaag tctagtcttt
      481 acttctgtat ctgccgtgac ggttgcccag ctggctcagt atggtcaagc tcaaaccttg
      541 acagtagggg cggcactccc agatggaaag atttcaattg caggttatga gtttgtaggt
      601 tatttggaag ggaaaaagca gagcagagag acaagttcag cactgcctat gggttcaata
      661 gataaggcag aagaaaatga gaatctactt gtccaaccaa cccaaccagc agatgagaac
      721 aaatcagaca tcccaacaga atcaattccg tcagaggata aggtaacaga cgcttcggca
      781 gaacagaaac catctgaaga caaggttgaa gaagttccag cagaaagtaa gccagcggag
      841 aaacctgttg aagaaacagg aggtggtcag gttatcggta cagaagacaa ggttatttca
      901 gaaacggaga aaccagtcca accagaaata cctgcgccag tggaaaaacc agctgtacca
      961 ggggaaacgg aaacgactgt tacacctgga gaagagaaac ctgttagtcc agaacttcca
     1021 actaatccag cagaaccaga tcgacctgtt gatacagttc gaacagatgt agagaaacag
     1081 gtaacggtca tcaagtatgg aactagctat gtgaaagata caagtttgcc agctggagaa
     1141 agcaaggttc ttacacaagg tgtggatgga aagcaaacag tcaccaccaa agtgacttat
     1201 accaataatg tagagaccgc tcgtgagatc gttgcgactg aaacaattga acctgttaca
     1261 gaagtaatcg cctataatga tgaggtttct aaaaatcgag aagagcttgt tgagagcttg
     1321 acgactattt catttgctac agagcgtcgt gccaatgcgg atctggaagt aggctccgaa
     1381 cgtgtactgg tcgcaggagt taatggacaa accaagaccc ttacaaagaa agtctatgat
     1441 tctacaggtg cagtcattag tgaagaagtg gtcagcacgg aagttattgc tcaaccagtc
     1501 acgcaagtca ttgaatacgg tactaagcca aagtctgttg ttgaaacaac agaggaaacc
     1561 aaggtaacag agcttgacta cactgttgaa actcgtcaga atccagactt ggaaaaaggt
     1621 caaacccgta cacttaccga aggaagaaag ggaacactaa cccaaaccta tcgcattact
     1681 aagacagacg gcaatgaaac ggcgcgtgaa ttagtaaaag aagaacgtgt cgaaccggta
     1741 aatgagatta ttgaagtcgg tacaaaggct gttgttcgtt accaaactcg ccaagaaaca
     1801 agtgtcattc catttactac agaaactcgt caggtggata gcttatttga aggtgaaagt
     1861 cgtgagttgg tagcaggagt ggacggtcag caaatacaga cctataagga tacctatgtg
     1921 gacggcgtca aggttgcctc tgaaatggtg ggtcaaccag aggttattca gccaattaag
     1981 cgtatagtag aagttggtat caagaaagaa gagacgagtc aagttctgac agaaacggag
     2041 gtgcttgcct atacttcaat caaagaagaa gatccgaatc tcccagaagg tgaaacaaaa
     2101 atcaaagttc agggagtaaa cggggagcgt aaggtccgta tcacacgggt caccaataac
     2161 cgtactggtc aagtaagcga aacccgcgag gtcatctctg agactgcacc agtcaatgag
     2221 gtccttgtgg tcggcactaa acctgccagc actagcctac tcgacaagaa gacgctaacg
     2281 ctggatgagt tcatgagcct cacagaggag cagcaggacg ccttcatcgc taagaaagga
     2341 actgttcctg gcacgaccat ccgaactggc gcaaccaagg acacccttga gaaggtggag
     2401 cagctcatca acctcgacaa gctcaacgct gagttcgtca gcctgcttaa cgcagcccgt
     2461 gcggcagaag gcctatcggc tgtaacatac gcaggtcagg gctcagacgc tcaaaacgcg
     2521 gcgactgctc gtgccaacga aatggcggac cacggtagtc ttcgctacca aggaactgtt
     2581 gctggggccc acatgcgccc agacggttct aagtggacca ccatctacac agcagagcag
     2641 acagctcgac aaggctggcg tggtgaaaac gcactccaga tgggctcatc actcagcgca
     2701 tacagcgcca tcaacgagag ccgcatcgcc aacaacctct tcactgagtg gatgaactcc
     2761 gctgaccaca aagccgtcat gatgaagaat ctggacaacc tccaggttgc agtaggcatc
     2821 ggactcaacg acaaggctat cgagaccacc ttcaaccaag gagtgaccgt ggctatgctg
     2881 gaattggttg agccaaaacc gtagaggaac tgagaaaaat tgtcgaaatt gcatggatgg
     2941 tatcatactt ataggagaac atatgaaaaa gaatctttta aaattgttgg tagcaatatc
     3001 aacgttaagt ttagtagctt gtggtcagac ggaacagact agtcaagtga accaagaaac
     3061 ctctagtagt acacaaaagg tgacggaaag ctcaagtaca acgaagagtg agaaagtagt
     3121 cagcagccca gatgattttc ctcgtgtaga tgaacatact gaaattgatg ctgaagcaaa
     3181 gcaagctgta aaagactatg taggatttta ttcaggaata gttgacattc cgtcagctga
     3241 aacaagtcat gcttccgatg ataatttgac cgtattttat aagattgatt ttgcaatcaa
     3301 cgaagatggt agctatgaat tgtatctaga gcgagatgtt cctggaagtc aaatagggca
     3361 tttgtatgtc acaaaagaca atcaaatgaa tgctaaacta aaggttgggg aacttcatca
     3421 aggtaagttc gaactagaat atggacaact gttgctttca gaaggtccta gcctaactca
     3481 aggttttctt ggagaagatg gagaattatt gccaatgtat ggcttttatg gcagtgatac
     3541 accaacaaac tatcttggtg taacagataa tgatgaaatt gttgtaaaag acggtaaagt
     3601 acaggctacc ttttacttat ctgcttatac cgacaaagca actgtcattg accttgaaaa
     3661 acaaacaaca agaccaacat cattgaagta cagtacagaa cagattagcc aatattcagc
     3721 ggaacattac aaagaattgg ggatggcgtc tgaagtgacc tatcagtaca atacagtaaa
     3781 tgagtttcta caggcactca gattgagtca tacgactcag aaaaaaacgt tagaaaaaat
     3841 aaaagttgtt gatggtagta gtctgactgg ctattatact tctgataata aggaaattaa
     3901 aaatatcaag tttgcgatat tcgatgggat atctaactct tactatgttt atacgggaga
     3961 taaggtttat caactcgaaa atgaacacga agccaaagaa ataaaagtta tacctgaact
     4021 cattgattac attagttact ctgtaggtta aaaggagagt aggatgaaaa aattattaac
     4081 ccttatttta acgagcgtca ccgtattttt cttagttgct tgcggtgcta aaaatgataa
     4141 tggaacctat acctattcaa gggaaaaaga cggcactact tacacagtaa ttatcaaaat
     4201 tgaaaataat actgggatcc ttacgtttga agaaaaaggg gaagatggtc aaactcaatc
     4261 tgaggaacag ggactgactg tcgatcaaga aagaaaaacg ctgacagcag aaaatgataa
     4321 ttcgaccgtg gattatgaaa ttgttgatgg ggtcctaaca ttagacactc ttgattcaac
     4381 tttagcaaat gcagagttta ccaaagaata aacgtaaata ctctgttcca tttgtcagaa
     4441 aagtcgctct agcggctttt ttgtctgatt ttttctacgc ttgataagct agtacaaatc
     4501 agatataata taaaaaataa gttacttaac aaggagacct ccatgcaatc ggaatacgtt
     4561 ttattgtgca gtccatacag atacagttca gtttttgcca attcagtcaa tagacaattt
     4621 atcgaaaaag aactaatgag tgtcgtcatg ccgggtgtca atataatgac cagaggtctg
     4681 ttgcgaacca tgttagaaac aaactatggc attacagatt attcaagttt aaaagaagaa
     4741 attgataagc ttgaagatgg tcgttatcat gctttagaag atgtttcttc atttattgat
     4801 ggaataggca ctcctgatgt aaaagacttt tacctttctt taaattcatt aacaggttct
     4861 caactaatca aaggctttga cgactgccgt ataattgatg tcttgacgaa atcgtatgct
     4921 actcgcttga ttactaaaga agaatttgag gaactgttta ccaagcaaac agaacgtatc
     4981 aaaaatagtt atcagacttg ggaacaatac ctagcatctt gtgtaatggg aaaattactt
     5041 cagtatgttc ctagctcaga aacgattaca agcgttgagg aatatgtggt agatgtttat
     5101 tctttttgta ttgcaccgac gaatgtcttt tcttatggta ctttttgggc aaatcatgag
     5161 ttagccaact tgacagcttt gttagaaaac ttcttacctg aagaaattgt taaagagtta
     5221 aaatcaaggc aagatcgtgt ggattataag ggtgagattc cgggacttac tgcgccttca
     5281 aatgatttgc ttgcttccct agaaggaacc tctatagacc caacttttat cgattatgaa
     5341 cgctatcagt acctaagcga acttgcagat tacgtttttt ggactcccct tattgagaat
     5401 aatcttgaat ggatgattgc agaaaaaaac ttgcaagaac aagatacaat tcttttacca
     5461 aaggagtatg caagtcttta ttcggctaga gtattttggt atcattatcc aagctacaag
     5521 gagttgcatg aagaacatat ttttgccatg tttgaaggaa ctctaagttt aaatcttatc
     5581 tttacagagg aagctgtcta cacctttaag aagaaattat tcggcaaacc agcacttgtc
     5641 agaatccctt gggaacaagt tgagttaagc tcctcactta atttatggat ggaagaaagt
     5701 aaaattcatt ttggcaaaaa gacaatctct aatgtcagtc cagttttaag cgaaatcggc
     5761 ctaaatagta aggctattga cgacctagat tctcaagaaa ggaaagctct tgaaaatgaa
     5821 tggcaacaaa aaatgaatca atttttagag gggattcctc aacggattcg tgaatttaag
     5881 gggaaatgag aaacaactct tgatgctgtt ttgaaaagtc gcctctgcgg ctttttttct
     5941 ctatctgcta ggaagaattg gtatttgtct gtatttctgc tataatagtt aaaaaatcat
     6001 tggaggaata ggatgcaaac aagacttgaa aaatttgaag caaaattagc tcaatcagat
     6061 gtggatggaa ttttggtaac gggacagaac aatatttact acctgacagg tttttggggg
     6121 acagaggcga ctgtcttcat cagtggcaag catcgcttgt ttgtgactga ttcgcgttat
     6181 accttgatag ccaaggcatc agtaaaaggt tttgatatta tcgagagccg ttttgccctt
     6241 gaagagattg caaagatgat aaaggaagat gggcttgaaa ccattggttt tgatagcgag
     6301 gtgacctatg gtttctatca aaatctgacc agcatttttg agggttatca actggttgcc
     6361 atgtcaaact ttatcgaaga cttgcgcatg attaaggatg agaaagaaat tgcgaccatt
     6421 cgccgtgcat gtcaaatttc ggatcaggct tttattgatg ttcttgactt tatcaaacca
     6481 ggtcagacga ctgagatgga cgttaatcat ttccttgacc accgcatgcg tcaactcggt
     6541 gcagaagggg catcatttga gttcatcgtg gcatctggct accgctctgc tatgcctcat
     6601 ggaagagcgt ctgaaaaggt tatccaagct ggtgagacct tgacgctgga ttttggttgc
     6661 tattaccagc attatgtcag tgatatgacg cggaccatcc atatcggtca tgtgacagac
     6721 caagagcgtg agatttacga tgtggtcttg cgtgccaata aggccttgat tgagcaggcc
     6781 aaggaaggtg tcacctaccg cgagtttgac gctattcctc gtgagattat caatgcggcg
     6841 ggttacggag ccaactttac acacggcatc ggtcacggta tcggtttgga tattcatgaa
     6901 tatccgtatt ttggaaaatc tgacgagact atcaaggcgg gtatggtctt gacggatgag
     6961 cctgggattt atttggatga caaatatggt gtccgtatcg aagatgactt gttgattacg
     7021 gaaaacggtt gtgaagtctt gacattagct cccaaggaat tgattgtcat ttgagaaatt
     7081 tgacagtttg tggtaaaata aaacgaataa ataaaatttg aagaggtatt caatacaatg
     7141 attgaagcaa gtaaacttag agcaggtatg accttcgaag ctgaaggtaa attgattaaa
     7201 gttttggatg caagccacca caaaccaggt aaaggaaaca ccatcatgcg tatgaaattg
     7261 cgtgatgtac gtacaggttc aaccttcgat acaacttacc gtccagatga aaaatttgaa
     7321 caagctatta tcgaaacagt tccagcacag tacctttacc aaatggatga cactgcttat
     7381 ttcatgaata ctgagactta cgatcagtat gaaattccag tagcgactat caaagaagaa
     7441 ttactctata tcttggagaa ttccgatgtg aagatccagt tctacggaac agaagtgatc
     7501 ggtgttactg taccaacaac tgttgaattg gtcgttgcag aaacacaacc atctatcaaa
     7561 ggtgcgactg ttacaggttc aggtaaacca gctacgatgg aaactggtct tgtagtcaac
     7621 gtaccagact ttatcgaagc aggtcaaaaa ctcgttatca acacagctga aggaacttac
     7681 gtatcacgtg cttaatcgtt tcctcttaag aaaggagagc ctatgacaac agaatatcaa
     7741 ggcgagattg ttatcgcacc tcgcgtcctt gaagtaatta caggcattgc tgcagcgaaa
     7801 gttgatggag tgcattccct tcaaaataag cgtgtagcag acagttggtc aaaaacatcg
     7861 ttaaataaag gtgtttatct tgaaactgac gaggaaggtc gagtgactgc ggatatttac
     7921 gtctatctag aatatggtgt aaatgttcct gctgtatcaa tggacatcca gcgtgcagtc
     7981 aagacagcag tttacaacta tgcagaagtt caagtggttg cggttaatat ccatgtcagc
     8041 ggcattgttc ctgataaaac accaaaacca gcattgaaag atttattcgg agaggatttc
     8101 cttgatgaag aataatagac atgccctgcg taagtgtgct ttgcaggcaa tcgtatcact
     8161 tgaatttggt caagaacctg ttcaggcagc tcagttttct tatctttatg atagagagga
     8221 agagcaagaa ggagttgaaa ttccgctctt tctccttaac cttgtcaatg gtgtagcaga
     8281 ctatcgtgat gacttggata aggagttatc tagccgatta aaagcaggat ggaccttaga
     8341 ccgtttaacc ttgattgaca agaatatcat gcgactaggc ctatttgaaa tcttacattt
     8401 cgaagaaacg ccagaccgtg ttgctgtcaa cgaggctatt gaattggcta aagaattttc
     8461 tgatgaatct tcagctaagt ttatcaatgg agttttgagc cagtttatta aagaagaagc
     8521 ctgaagagct tcttttttac ttgagaaata agagaatgca tcacaaaaaa gctgcaccta
     8581 atttttatta ggtgcagctt tttttatata ctagctcctg ctagtaggct aatcggcagg
     8641 atatagtctg tttttgtcag tttttttcct tcgattttat caactaatag ttcaaccagc
     8701 aggcgagcta tttcggttaa tggttgcttg atggttgtca gttgaggata gtagttttcg
     8761 atgaaactgg ttccatcata accaatcaat ttaatatcct ctggaataga tagtttcaat
     8821 gaacgaatga cgttccatac cagcatagcc gttgcatcgc cagatacaaa gataccatct
     8881 ggtttttgct tttcaagaat ggctcggatt tccatctcct tgcgcacagg tgagaaatca
     8941 ctggagatat gaaaaacgtc ggctttgttc aaaatagatg tgaaacctac ttggcgaagg
     9001 ccggtaggtg aattggaatc atcgttcccc gtaatcatta atggattgtg gcatcccgct
     9061 ttttgtaagg tttgggcagc taataccccg ccagcaaaat tatcggaaga gacaatgggg
     9121 atggaaggag agaggttgcg gtcaaaagcg ataattggag ctacgacacg gtcgtagtct
     9181 tggataccga gattgtgact gcccgagata atcccatcta cttggttagc tgctaacatt
     9241 tctagatatt cacgttcctt atcggactcg tgctggctat tgcaaataat ggttttatag
     9301 cctcgatcaa aaagctcttt ttctaaatgg ctaatcaatt cagaataaaa aatattgttt
     9361 attgttggga agataagacc aactaatttt gcagatttac cttgcaaact acgagctaaa
     9421 ttattaggtt tgtagcccag ttcacgcata gcctcttcga cattgcgaat ggttttttca
     9481 gataggtatc cttttttatt gataacgcgc gagacagttg ttgggctaac cccagctaac
     9541 tgtgcgacat cagttagttt tgcgaccata atctaaatgg tagtaggttc cggtcggatt
     9601 acctgtcgta atgacgatgc cagactgatc cgcatcaggg aagacacgac cagaaaatac
     9661 tttctctcct ttattgataa agatttcaaa gacagatttg tcgatgaaga tattggctgt
     9721 gagagctcct ggagaaatct cgcaagagcg acttgtaccg aaatcgagtg cgaatggctg
     9781 accacagttg ccgcggtcca atgtaatctg gccttgctca gtgtctacag acaagaccaa
     9841 gcctttttct gcttcatttg cgaacaatac gatttcatgc ttcgtgcccg ctgaaaaatc
     9901 aagttccaat tcgtaaacat tattggtttc tttttgggct gaaaatggct gagcttcttt
     9961 acgaagactg gtaatcgcat cgactggata ttggtagagc ttaccgtcct tgattgttaa
    10021 ttctttaacc aatgatagac agccttggta gtcataagca tcggttgggt attccacatc
    10081 tggaagtgcc aaccagctaa cagatagagt tcgaccgtct ggtgcattaa aggcctgggt
    10141 tgcatagcac tcaaaaccat agtccagatt gatcaattcg ctcggttcga caatgcttgc
    10201 tgcttcagga tcgaaactct gaccaatctt gtacatattt ggatagatat tgccatagtc
    10261 caatacctct ttgtccaagc cttgtggaca gtagagaagg atgggttgct caccgacgaa
    10321 cgcaatattt gggcattcca tcatataagc ggtcatatca ttggcaaaat caaggtcacc
    10381 aacataggac cagttgaggt agtcgttatt ttcagcttta taaagtttga caattccctt
    10441 tttattcaga ttttgtccac cgacgatagc gtaatattgc cctttatagt tgaaaatttg
    10501 tggatcacgg aaatggtcgg tggtatcttc tggttgctta atcaagactt tatcaatctt
    10561 ttcaatctta ccatctttat ccattaaggc accgatttgg tatggatggc gaacccaatt
    10621 ttcatcgcgg acatttccag tatagaagag gaagagcttg tcgccaaatt ccatggcaga
    10681 tccagagtag gcaccgtggc tatcaagtgg tgtatctggg tacataaccg taccagtttc
    10741 ttcaaaatgg accaaatccg ttgactctgt atggacccaa gattttaatc cgtgcgcagc
    10801 accgaatggg aagtattggt aaaaaagagt ccactttcca ttaaaataag aaaatccatt
    10861 tggatcattt aacagtccat gtggtgtttc aatatggaaa tttgtcctcc aaggagaact
    10921 ctctgtattc ttctttattt tttcgatata ttcggatgtc cagtcagcat aagccctgta
    10981 acgctcctct gttgtaaatg ccataatttt ctccaaattt tctagt
//
LOCUS       DASGAC010000058        11000 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.058, whole genome shotgun sequence.
ACCESSION   DASGAC010000058 DASGAC010000000
VERSION     DASGAC010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 11000)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11000)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11000
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.058"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(110..652)
                     /gene="lepB"
                     /locus_tag="U1335_001160"
     CDS             complement(110..652)
                     /gene="lepB"
                     /locus_tag="U1335_001160"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEM5231647.1"
                     /translation="MVKRDLIKQISLLVLLILGIIGLRFWLLEPVTITPEMANSYLKE
                     NDFIMTVRNVRPIHGDFILYNHEGKEYVSRVIALENETVTYMDDVLYRNDIIVTENYL
                     KTPHSQESYTDDFTLETLTNGKYNVIPEGHYLVLNDVRTTQQDSRSFGLISSEAIVGR
                     LTFRISPLSEFGFIKTGLVQ"
     gene            complement(695..1312)
                     /locus_tag="U1335_001161"
     CDS             complement(695..1312)
                     /locus_tag="U1335_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HEM5231648.1"
                     /translation="MSDIMYPEVLTVGSGAVKVATVGDSLTYGYGLENREKDAYPCIL
                     AEKLGHPYQVSNYGLSGRSLQSTADFPYFKEKNAQLSLESEADIVIIMIGSNDSRGPY
                     WNRERFIREYREMAEQYMDLPSQPDVYLVIPPYVPTSRFGLNNQIIEDELQKIIPAIG
                     NELGLPVINLYTVTEGHLEYYSDGLHLTPLGNQVIAEEIYQHLRH"
     gene            complement(1459..3126)
                     /locus_tag="U1335_001162"
     CDS             complement(1459..3126)
                     /locus_tag="U1335_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004183168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEM5231649.1"
                     /translation="MNKSTLTFEDIKTQNLENLPDQITALYCRLSAEDANEGESNSIS
                     NQKQILAQVALRENLPNPFFFVDDGFSGSNAQRPDFQKMMNLVETGKIQAVVVKDLSR
                     LSRDYLLTGQLTEITFPSKNIRFISLNENLDSNKRNSQDAYLAPLVSLFNNWYSLQCS
                     EKIKLSKHTKAKTGEKIGWIAPYGYLKNPENPKEWLIDDYASQIVKRIFKEYLSGKPI
                     ASIANDLRKDKVLTPANYKKKLGISNYRVLESDPFHWKSQMICQMLEKEEYTGATINL
                     KTAKISYKQRRCKLRPREDWLIFPNTHEAIISQEDFEMARKMLGHKRVKRKNHWKDTA
                     GHENLFAGLVFCENGHKLSFCPQQKDDINLDHYKCYHYRRAGDTCSGSHYLRKEILEE
                     LVLSDLQQLISSIQFDEGRLLAKLKSRFDIRESEKQDSLRKQLNKAEKRSLELDTIIQ
                     KLYEKQLLDEISDERFRKLADSYESEQAELSQQIQKFQKVLVSQTESTENIDKFMRTI
                     RQYTKLETLTTQLVNELIDKIIIHQPTGRGKKRQVTIELHYRFIGEL"
     gene            complement(3287..4069)
                     /locus_tag="U1335_001163"
     CDS             complement(3287..4069)
                     /locus_tag="U1335_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004183166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-relaxation family protein"
                     /protein_id="HEM5231650.1"
                     /translation="MRLTKRDYEVLSLLNRCRYATTKQLVELYFRENKPKTATRRANL
                     LTKKLSNLGLIHHLERRIGGVRAGSGSYIWHITHKGIKVLREIEPSVKLKLKNRYEPT
                     RNHLKHQLFVTQLFVELHKLHSERKLFMEEFSFEPKCWRSFATLFSHFTLKPDAFVRL
                     TIGEFEENYFFEADNATEHIGRVIAKCKQYIAYFNTGIEQRENEVFPLVVWIVPDEKR
                     KIGILNRIKEDLDAYWELFEVVTLDEFSDFIQGGRDDARTET"
     gene            complement(4056..6182)
                     /locus_tag="U1335_001164"
     CDS             complement(4056..6182)
                     /locus_tag="U1335_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system DNA-binding
                     domain-containing protein"
                     /protein_id="HEM5231651.1"
                     /translation="MKRPTHLSWQSMDWTRPFEFETVCNFTTQLNGYSRRQPFIWEIR
                     LTPEKVSHLIGADSIDLRFLKEMMTSYNAVRFEKTKRTKVTSAYSITLSKNHYALKTK
                     EVDNLVRSFLSQSGTLKKSEEIVLQLVVGKSSSPKPILKDLGNPDATLWQKLTGNIPP
                     LSSDSKTLMREKLHHSLFQISLRLGIRTDNKAREIQLLKSILASLRILERAGAIFSAK
                     PTSIEKINHGKIPWHFQTIVSSIELASLFLLPAGDAQYIGVSSLSPRTILPPIGFSQN
                     TKRLFGYSLEKSPRFIGIPARNGLSHTWLLGGTGSGKSTAMLNLFLADARENRSAVVI
                     DPKATLVSDILERLPKERDEDVVILDPSQAGQTISINPFDLVKFGVPAELVADMLLGV
                     FQEIFEESWGIYTQDILSHSFHTLAKIDGSTLINLPKLLTNKAFRHDLLKTISDPFLL
                     DFWQGYDTLSDSARQTMTSPVLNKFRSVLLRPALRAALGESSGKFSLKDIFDKPRLLL
                     VPLNKGLIGAENAKFIGAILLGCLYQLTLLRAKETVRKPVFIYIDEVADYLKLPVPLD
                     DALSMSRSLGVGYILANQFSKQLPKQLRESIYANCHNQIIFGLSMNEAKELAGLAPEL
                     STEDFYKLPPFQAYAKVPITSNIFKWLSVRTLPASPAFRKKDEIYGESFKRYGSTFNE
                     EAPTKNITKPLSGIGRKKKEVSDEVN"
     gene            complement(6351..6965)
                     /locus_tag="U1335_001165"
     CDS             complement(6351..6965)
                     /locus_tag="U1335_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000192865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine methyltransferase"
                     /protein_id="HEM5231652.1"
                     /translation="MTKYQDTINQHPPKKFKTILADPPWDVAQKGKLGAIRHYNLMTI
                     EEIKKMPIADLTESNAHLWLWTYPAVLEQSFDVVRAWGFEPKSIFTWVKPRLGLGNYL
                     RNCTEQVIFATRGKAPIKFKGQMNWGMFPVQDHSHKPEELYSIIERCSEGDYLELFAR
                     RPVPSDKNWYVWGNEITSDIIIPNYPVPKYSKDVRDFRKAGQDE"
     gene            complement(7136..7378)
                     /locus_tag="U1335_001166"
     CDS             complement(7136..7378)
                     /locus_tag="U1335_001166"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231653.1"
                     /translation="MDIWQILAIFCLGALFSLTLIAIWLGEEDDKVESSKPQVTFSEE
                     ELALTEFLETRQAINEDFLVAQKELLDTLKRERRNS"
     gene            complement(7390..7656)
                     /locus_tag="U1335_001167"
     CDS             complement(7390..7656)
                     /locus_tag="U1335_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231654.1"
                     /translation="MSHLPQAFNQSQISASATFSPYKMKVARNLSQDMAVVQANELLA
                     QDILNKVASLSELERQILAHNPQAQQRTNFVIKAFTYVSVQKFK"
     gene            7770..8828
                     /locus_tag="U1335_001168"
     CDS             7770..8828
                     /locus_tag="U1335_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231655.1"
                     /translation="MFTLQNLLQLLEKENQGWKNPTTMTKVVLMTLTDYNYPSDIASK
                     VFSGVNRGRNVYFEIEQLISDEGFETYLANVELRLRNQNFRNGNFDSLKIVEENYQLL
                     KDSTNLNQDIFQGLLQSYAKNKDRRPYLFLAECFYYALACQHNKSVSYKATKFSDIKS
                     HPTLLAWGDDFDELMISEILPPKFWTTVEQMTSKEISVFKTLAKLVIIDEDEEYYLYA
                     PVTTEEIQLYQKFGIGNAEFLLMEEFGLINIGARVDNSVSVEVEPAGFQNDNLVLIFT
                     TNSEPFDIAYKSYTFTTVGLKLLDILGIETDDNFFEELSKLFVEQHTNLPIDFYLAPV
                     EKVEEAGSVEELEGYRLS"
     gene            complement(8860..9228)
                     /locus_tag="U1335_001169"
     CDS             complement(8860..9228)
                     /locus_tag="U1335_001169"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231656.1"
                     /translation="MNDYKAKQELITLGEEIRQHTLWGLIPEIPKWDCTELGAYLPAI
                     SLPAFIYSLTVKNGVMSYAVTSFEQFTKHTEIYEINATLWEFMVKLQAVIDSETEKEF
                     CRNLLEILHTEVYFIKEWDD"
     gene            complement(9817..10971)
                     /locus_tag="U1335_001170"
     CDS             complement(9817..10971)
                     /locus_tag="U1335_001170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231657.1"
                     /translation="MKKIQKILASIIAYCILLLTLNSNTVFAEPTPLSLYEDNNIRFA
                     PLATGLNSGYDLYGIIGNRDRKYDDDVRAFKLEGVVGSNVKDLVIYLKPGESFTIDSP
                     NMPGRTINSVKHNSVIKRETPFGGTVDEFGTVEDQIPLPLTISYDDLVERDPFNDDDR
                     AVTYNDSYTFIGGEDERFLTVDGFYLLDYDSSEFDLDSAIGVYESFSYGYAGAAHSVP
                     FKMYVREGELIPLPESLYGQTLTGIAFVRGGYGALEDGGAEGITDVYTNNIVYSNIYN
                     NSHQFAMFMLYSEESSNFDMSTNGQTWEALDFNKVPGVQEKLDEIEADKIASETEEST
                     SAEESEDTKYIDEESTETKSNSVNGMVVAVGILIVLSTISFIVFYSKRNK"
BASE COUNT         3097 a         2191 c         2245 g         3467 t
ORIGIN      
        1 tgcagttttc tcaaagtaac ttctggaagg acgggaacta gaacttactt tgagaattta
       61 cctttcaaaa tacagttcca gtcatctcaa cacaataaaa aagctgattc tactgaacca
      121 gccctgtctt aataaaacca aattctgaaa gtggactaat ccgaaaagtc agtctaccaa
      181 caatagcctc actagaaatc aaaccaaaac tacgactatc ctgttgagtc gttcgtacat
      241 cattcaacac caaatagtgc ccctctggaa tgacgttgta ctttccattt gtcaaggttt
      301 ccaatgtaaa atcatctgta taactttctt gtgaatgagg cgtttttaaa tagttctctg
      361 taacaataat atcattacga tagagaacat cgtccatata ggtaaccgtc tcgttttcca
      421 atgcaatcac acgactcaca tactcttttc cctcatggtt atacaaaata aaatctccat
      481 gaatcgggcg gacatttcgc accgtcatga taaagtcatt ttccttcaaa taactatttg
      541 ccatctcagg ggtaatcgtg actggctcaa gtaaccaaaa tcgtaggcca atgattccca
      601 aaatcaataa gaccaataaa ctgatttgtt ttattaaatc tctttttacc ataatctctc
      661 catttcacta gtattatacc acaatttaga gccattagtg tctgagatgc tggtaaatct
      721 cttcagcaat aacttgattt cctagcggtg tcaaatgaag accatcgcta tagtattcaa
      781 gatgtccctc cgtcacagtg taaaggttaa taactggtaa accaagttcg tttccgatag
      841 ctgggataat tttttgtaat tcatcttcaa taatttgatt attcaatcca aaacgactgg
      901 ttggcacgta aggcgggatg actaaataaa catccggctg gcttggtaaa tccatatact
      961 gctctgccat ttccctatac tctcgaataa acctctccct attccaatat ggtcctcggc
     1021 tatcgttact accaatcata ataatgacaa tatctgcttc actctcaagt gaaagttggg
     1081 cattcttctc tttaaagtaa ggaaaatctg cagttgactg aagtgaacgc ccactcaatc
     1141 cataatttga aacttgatag ggatgcccaa gtttctcagc tagaatacaa ggataggcat
     1201 ctttttcacg attctccaag ccatatccat aagtcaaact atctccgact gttgcaactt
     1261 ttacggcccc acttccaacg gttaggacct caggatacat tatatctgac acacgaactc
     1321 ctcaattttt cttattttct attgtatcat gttgaaaaaa ataaataaac ttctgaattt
     1381 gtgatataat gtccacccct caacgagcag tccattagtt attattctac gagcgagttt
     1441 tagttcgctc gttttgtctt atagttctcc aataaatcgg taatgtagtt cgatagtgac
     1501 ttgtcgtttt ttgccacgtc cagttggttg gtgaatgata attttgtcaa ttaactcatt
     1561 tactaactgc gttgttaaag tttcgagttt tgtgtattgg cggatagttc gcataaactt
     1621 gtcaatgttt tccgtagatt cggtctggct aactaagact ttctggaatt tttgaatctg
     1681 ctggctaagt tcagcttgct cgctttcgta gctatctgct aactttcgaa atcgttcatc
     1741 gctaatctcg tccaaaagtt gcttttcgta gagtttttgg ataattgtgt ccaactctag
     1801 cgaacgcttc tcagctttat ttaactgttt gcgtaagcta tcctgctttt cgctctcacg
     1861 aatgtcgaag cgagacttca attttgcgag tagtcttcct tcatcaaatt gaatggaaga
     1921 aatcagttgt tggaggtcgc tcaaaaccaa ctcttccaaa atttccttgc gaagatagtg
     1981 tgaacctgaa caagtgtcgc cagctcgacg ataatggtaa cacttgtagt ggtcgaggtt
     2041 gatgtcgtcc ttttgttgtg ggcaaaaact gagtttatgt ccattttcac agaagactaa
     2101 tccagcgaac agattttcgt gtccagcggt atctttccag tgattcttgc gttttactcg
     2161 cttatgacca agcattttgc gtgccatttc gaaatcctcc tgcgaaataa tcgcttcgtg
     2221 tgtatttgga aaaatcaacc aatcttctcg aggtcgcaat ttgcatcttc gttgtttgta
     2281 ggaaattttt gcagtcttga gattgattgt tgcaccagta tactcctctt tctcgagcat
     2341 ctggcaaatc atctggcttt tccagtggaa tgggtcgctt tcaagcacgc gataattcga
     2401 aattcccaac tttttcttgt agttggcggg tgttaggacc ttgtcctttc gaaggtcatt
     2461 cgcaatagaa gcgataggtt ttccagagag atactccttg aaaattcgtt tcacaatttg
     2521 actggcataa tcgtcaatta gccactcctt aggattttct ggatttttga gataaccgta
     2581 cggtgcaatc cagccaattt tctcaccagt ttttgcctta gtgtgcttag acaacttgat
     2641 tttttcgcta cactggagcg aataccagtt gttaaataag gaaactaagg gagcaagata
     2701 ggcatcttgg ctattgcgtt tattgctatc cagattttca tttaaggaga tgaagcggat
     2761 attttttgac ggaaaagtaa tttcggtcag ttgcccagtt aggagatagt ctcggctgag
     2821 acggcttaaa tctttcacga ctaccgcttg gattttgcca gtctcaacta ggttcatcat
     2881 cttctgaaaa tctggtcgtt gggcgttcga acctgagaaa ccatcgtcca cgaagaagaa
     2941 tggatttggc aagttttcac gcagagccac ttgggcgaga atctgtttct ggttggaaat
     3001 cgaattactc tctccttcgt tagcgtcttc ggcggataag cgacaataca gagcggttat
     3061 ctggtctggt agattttcca aattctgcgt tttgatgtct tcaaatgtca atgtgctttt
     3121 gttcatagtg tgctcctttc gattcaccta taacccactg acatgatagc tcgaagtggg
     3181 cgggaagtcc agtcaattct tctctaaaat caaccgtagt agtttctttt caagaggctc
     3241 ttttcctgta aacttccgca taataacgaa tgttgcttga ccaattttac gtttctgttc
     3301 ttgcgtcatc tcgtcctcct tgtataaaat ctgaaaattc gtccagtgtt accacttcaa
     3361 aaagctccca gtaagcgtcc aaatcttcct tgattcgatt caaaatgcct atcttccgtt
     3421 tttcatctgg cacaatccaa accaccaatg ggaagacctc attttctcgc tgttcgatac
     3481 ctgtattgaa gtaggcgatg tattgcttac atttggcaat cactcttccg atatgctctg
     3541 tggcattgtc tgcttcgaaa aaataatttt cttcgaattc gccaatagtc agtcgtacaa
     3601 aagcatctgg cttgagtgta aaatgcgaaa acaaggtcgc aaaactccgc caacattttg
     3661 gctcaaagga aaactcttcc atgaatagct ttctttcgct atgaagttta tgaagttcca
     3721 caaataattg cgtcacaaac agttggtgtt taaggtgatt gcgtgttggc tcatagcggt
     3781 ttttcaattt gagtttgaca ctcggctcga tttcacgcag aaccttaatt cctttgtgtg
     3841 tgatgtgcca aatgtaggaa ccactcccag ctcgcacgcc accgattcgg cgttcaagat
     3901 gatggataag tccaagattg gatagtttct tggtgagaag attggctcgc cttgtggctg
     3961 ttttaggttt attctctctg aaatacagtt ccactaactg cttggtcgtg gcgtagcgac
     4021 aacggttgag taagctcaaa acttcataat ctcgtttagt taacctcatc tgaaacctcc
     4081 tttttctttc gtccaatgcc agaaagtggt tttgtgatgt ttttggtcgg tgcttcttcg
     4141 ttgaaagttg aaccgtatcg cttgaaactc tcgccataaa tctcatcttt cttgcgaaag
     4201 gcaggcgacg ctggcaaagt ccgaacggat agccacttaa agatattgga ggtaataggg
     4261 actttggcgt aagcctgaaa cggaggcaat ttgtaaaaat cctcagtaga aagttcaggc
     4321 gcaagcccag ccaattcctt ggcttcattc attgaaagcc caaagataat ctggttgtgg
     4381 cagttggcgt aaatagactc tcgaagctgt ttcggtagtt gcttcgaaaa ttgatttgcc
     4441 aagatataac caacgccgag actgcgagac atagaaagtg cgtcgtccaa cggaactggg
     4501 agtttgagat aatccgccac ttcgtcaata tagatgaaaa caggctttcg aacggtttcc
     4561 ttggctctca gaagcgtcaa ttggtacaaa caacccaata aaatcgctcc gatgaattta
     4621 gcattttctg caccgattaa gcctttgttt agcggaacaa gtaagagtct tggcttgtcg
     4681 aaaatgtctt tcagtgagaa ttttcctgaa gattctccta gtgccgctct caaggctgga
     4741 cgaagcaaga cgctccgaaa tttgttgaga acaggtgaag tcatggtttg gcgagcagaa
     4801 tcgcttaagg tgtcgtaacc ttgccaaaaa tccagcaaga atgggtctga aatagttttc
     4861 aaaaggtcgt gccgaaaggc tttgttggtt aagagttttg gcaggttgat cagtgttgaa
     4921 ccatctattt ttgccaaagt gtgaaaacta tgactgagaa tatcctgtgt gtaaatcccc
     4981 caagattctt caaatatttc ttgaaaaaca cccagaagca tatctgcaac caattctgct
     5041 ggaacgccga attttaccaa atcgaaagga tttatcgaaa tggtctgtcc agcttgacta
     5101 gggtctaaaa tgaccacgtc ctcatcccgt tctttaggca gtcgttccaa aatatctgaa
     5161 accaatgttg ccttggggtc gatgaccaca gcggagcggt tttctcgtgc gtccgccaag
     5221 aataaattga gcatggcagt agattttccg ctcccagttc ctcccagaag ccaagtatgc
     5281 gacaatccat ttcgtgctgg aataccgata aatcttggag atttctctaa actgtatcca
     5341 aagagacgtt tggtgttttg cgaaaagcca attggtggta aaatagttct gggcgatagt
     5401 gatgatacgc ctatatattg agcatcgcca gctggcagta agaagaggct ggcgagttca
     5461 atgcttgaaa caattgtttg gaagtgccat ggaatttttc cgtggtttat tttttcgatt
     5521 gaagttggct tggcagaaaa tatagcacca gctcgctcta aaattcgaag cgaagccaga
     5581 atactcttta gaagttgaat ttcccgagct ttattgtctg ttcgaatgcc aagacgcaaa
     5641 ctaatttgaa atagactgtg gtggagtttt tctcgcatca gagtcttaga atctgacgag
     5701 agcggcggga tattacctgt tagtttctgc caaagagttg cgtctgggtt gccaaggtct
     5761 ttgagaattg gttttgggga agaagattta ccaacaacta gctggagcac gatttcttca
     5821 gattttttca aagtaccaga ttgcgacagg aaactccgaa cgagattgtc tacttctttg
     5881 gtttttaggg catagtgatt ttttgaaaga gtgatgctgt aggctgaggt cacttttgtt
     5941 cgcttggttt tctcaaaacg aacagcgtta tacgaggtca tcatttcttt caaaaatcgc
     6001 aagtcgattg agtcggctcc gataaggtgg ctgacttttt ctggcgttaa acgaatttcc
     6061 cagataaagg gctggcgacg agaataacca ttgagttgtg tcgtaaaatt gcagactgtt
     6121 tcaaattcga acggtcgcgt ccagtccata ctttgccacg acagatgagt tggtcttttc
     6181 atactacctc caatcttgat gatgttcgat gagttttatg gcgacgtaaa agcctaaaga
     6241 cattatagag ccaaccacca actccagcca aatatcgact agaaggcgaa cagagtagtt
     6301 gaccagtatt gccaaaaggc agaaactgac aatgtagcct gttagctttt tcattcatct
     6361 tgtcctgcct ttcgaaaatc tcggacatct ttcgaatatt tgggaactgg ataattcgga
     6421 atgatgatgt cgctcgtgat ttcattgccc caaacatacc agtttttgtc tgaaggcact
     6481 ggacgacgag cgaagagttc taagtagtcg ccctctgaac agcgttcaat aatggaatag
     6541 agttcttcag gtttatgact gtggtcttgg actggaaaca ttccccagtt catctgtcct
     6601 ttgaatttga taggagcttt gcctcgtgtg gcgaaaatca cttgttcggt acagttccga
     6661 aggtaatttc ccaagccaag ccgaggtttc acccaagtga agatggattt cggctcgaat
     6721 ccccaagcac ggacaacgtc gaaagactgt tcgaggacgg caggatatgt ccagagccag
     6781 agatgggcat tgctttctgt gaggtcggcg atgggcattt tcttaatttc ttcaattgtc
     6841 attaaattat aatgtcggat tgcgccgagt ttgccttttt gtgctacatc ccaaggtggg
     6901 tcggcgagga tagtcttgaa ctttttaggt ggatgttggt taattgtgtc ttgatatttt
     6961 gtcattttga aaatcctttc tgtctgtatc agacgctccg actttacctt aaaatataat
     7021 tttttcaaac cataagcaag ataaggttat ggagcgatgc gaaagctaaa aacagaggtc
     7081 agacggaaca aatccgtccg acttgttcgc tgttgtgaga aatacaacag agtggttaag
     7141 aattcctcct ttcacgtttc aaagtgtcca gaagttcttt ttgggctacc agaaaatctt
     7201 cgttgatggc ttgacgagtt tcaagaaatt ctgttaaagc gagttcttct tctgaaaaag
     7261 tgacttgtgg ttttgaactt tccaccttat catcttcttc gcctagccaa atagcaatta
     7321 aggtgagtga aaatagtgcg ccgagacaaa atattgctaa aatttgccaa atatccatag
     7381 tgccctccct tatttgaatt tttgaacaga gacataagtg aatgccttaa tgacgaaatt
     7441 tgtccgttgt tgggcttgcg gattgtgagc caaaatctga cgctccaatt ctgagaggct
     7501 ggcgacttta tttagaatat cttgtgccaa gagttcattg gcttgaacga ctgccatatc
     7561 ttgcgacaga ttgcgagcta ctttcatctt ataaggactg aatgtagctg atgcggatat
     7621 ctgagattgg ttgaaagctt gtggtagatg tgacataggt tttctccttt tgatataatg
     7681 tagttagcta acttggttac agtatatcaa gcttgaaagc ctaaattttg ccaaagtttt
     7741 gcgatttcat tgcgaaaaag gagaataaga tgtttacact tcaaaatctg cttcaattgc
     7801 tggaaaaaga aaatcagggc tggaaaaatc caaccacgat gacaaaggtt gttttgatga
     7861 cacttacgga ttacaattac cctagcgata tagcttcgaa agttttttca ggtgttaatc
     7921 gagggcgaaa tgtttatttt gagattgaac agctgatttc cgatgaaggt ttcgaaactt
     7981 atctcgcaaa tgttgaactc agattgcgaa accaaaactt ccgtaatggt aattttgata
     8041 gtttgaagat agttgaagaa aattatcaac tccttaaaga ttcaaccaac ctaaaccaag
     8101 atatcttcca aggtttgctt caatcttacg ctaaaaataa agaccgccga ccatatttgt
     8161 tcttggcgga atgcttttac tatgccttag cttgtcagca taacaagagt gtgagttata
     8221 aagcaacgaa attttccgac atcaaaagcc atccgactct tctggcttgg ggagatgatt
     8281 ttgatgagtt aatgattagt gagatacttc cgcctaaatt ttggacaacg gttgagcaga
     8341 tgaccagcaa agagatttct gttttcaaga ccttggcaaa attagtgatt attgacgaag
     8401 atgaggaata ttatctctac gccccagtga ctactgagga gattcaactt tatcaaaaat
     8461 tcgggattgg caatgcggag tttcttttga tggaggaatt tgggcttatc aatattgggg
     8521 caagagttga taactctgta tctgtcgaag tagagccagc aggttttcaa aatgacaatt
     8581 tagttttgat atttacaaca aattctgagc cttttgatat tgcttacaaa agttatacct
     8641 ttacaacggt tggtttgaag ttgcttgata ttttaggtat tgaaaccgat gataatttct
     8701 ttgaagaatt atccaagctt tttgtcgagc aacacactaa cctaccgatt gatttttacc
     8761 ttgcgccagt tgagaaggtg gaggaggcag gaagtgtgga agaattagag gggtatcgat
     8821 tatcgtaaaa ataccccagc ttattcagct gaggcatttc taatcatccc attctttaat
     8881 aaaataaact tccgtatgca aaatttcaag caggtttcta caaaactctt tttctgtttc
     8941 gctgtctata actgcttgaa gttttaccat aaattcccaa agtgtggcgt taatttcgta
     9001 gatttcggta tgtttggtaa attgttcgaa acttgttaca gcgtagctca taacaccatt
     9061 ttttacggtt aagctgtaaa taaatgcagg caagcttatg gctggcaaat aggctccaag
     9121 ttcggtacaa tcccattttg gtatttctgg tatcaagccc caaagtgtat gttggcggat
     9181 ttcttcgcca agtgttatta attcttgttt ggctttgtag tcgttcataa tttccttatc
     9241 tgttatctat tattactgga caatgataac tctctttatt aaggaagtcc agtctatttc
     9301 gatgtaatat ttacaatctg aaaatggatt tcaaaatcag agtctgatga atattttaac
     9361 gctaaaacgg acgttatatg ggcaggaaat ggcgatacgg aggattaatt atcaaaggta
     9421 gttaatcaga tattaataga cattttttga tacagtatgg ggaattcata ttgagcttga
     9481 ttgattttga gggtgacaat ggctggtttg tctttgtatt ttagattcat atcgcctgtc
     9541 cattattgaa gactataggg gctctataca gtagtagcaa aatatcttga ccgccctaaa
     9601 ataacccaga atagataata agtcgcctga caaaataccc cagaaatggc gacaccccgc
     9661 caacaaaatc tcactcgaag cgaatagcga tgcgaataag aaaactagaa aaatttccag
     9721 gcaagtaggt ataatactag gtttataaac ttcgtataga agttaaagca actatctcgg
     9781 agaagcaaaa agtcccatat atacgggacc aattagttac ttattccttt tgctgtaaaa
     9841 tactataaaa gaaatagtag atagtacaat taagattcca acagccacta ccattccatt
     9901 gacagaattt gatttggttt cggttgactc ttcgtcaata tatttggtat cttcagattc
     9961 ctcagcagaa gttgactcct ctgtctcgga ggcaatttta tcggcttcta tttcgtctaa
    10021 tttttcttgg acacctggaa ctttgttaaa atctaaagct tcccaagttt gtccattagt
    10081 cgacatatcg aagtttgatg attcctcaga atagagcata aacattgcaa attggtgcga
    10141 attgttataa atattgctgt atacaatgtt atttgtgtac acatccgtga ttccttctgc
    10201 acctccatcc tccagtgctc cgtatccacc gcggacaaat gcaatacctg taagcgtttg
    10261 cccgtacaga ctttcaggta gggggataag ctcgccttct cgaacataca ttttaaaggg
    10321 aacgctgtga gcagccccag cgtatccata actgaaactt tcatatactc ctatggcaga
    10381 gtcaaggtca aattctgaac tatcatagtc taataaataa aagccatcta ctgttaggaa
    10441 tctttcatcc tctccaccta tgaaagtgta gctatcatta taggtcaccg ctcggtcatc
    10501 atcattgaaa gggtctctct caactaaatc atcgtaagat atagtgagag gtaaagggat
    10561 ttggtcttct actgtaccaa attcatcaac cgtacctcca aaaggagttt ctctttttat
    10621 aacagaattg tgtttgactg aatttatagt tcttccaggc atgttaggag aatcaattgt
    10681 aaaagactcc cctggtttca gataaatgac aagatcttta acattagatc cgacaacccc
    10741 ttcaagcttg aacgcacgaa catcgtcatc atacttacgg tctctatttc caattatgcc
    10801 gtagagatcg tatccactat tcagtcctgt agctagtggt gcaaatcgta tgttgttatc
    10861 ctcgtaaagt gacagcggtg taggttctgc gaaaacagta ttactattca gggtgagaag
    10921 taatatacag taagcaatga tacttgcgag tattttttga atctttttca taatgacctt
    10981 tctaactgac attgtgttat
//
LOCUS       DASGAC010000059        10894 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.059, whole genome shotgun sequence.
ACCESSION   DASGAC010000059 DASGAC010000000
VERSION     DASGAC010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10894)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10894)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10894
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.059"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..870
                     /locus_tag="U1335_001171"
     CDS             <1..870
                     /locus_tag="U1335_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000564846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISAs1 family transposase"
                     /protein_id="HEM5231658.1"
                     /translation="KELKLSFEVSSEATDFSKLIAVDGKTIRGNRGKHQSPTHIVTAY
                     DGGNRLSLGQVAVEDKSNEITAIPRLLRQLDLRKSVVTIDAMGTQTDIVDVIIGGKGD
                     YCLAVKGNQGNLHEDIDLYFSDAKLLSKLTAKGCHYQTIAKARSQIEVRDYWISHDVK
                     WLSQRHPKWKKLRGIGMAKNTIDKDGIITEEVRYFILSFKGDVQTFSQIVRGHWSVES
                     LHWLLDVVYREDKNQTLDKRAAFNLNAIRKVCLHLLQNMTFPKEKLSYRRKQRYISVH
                     LENYLPQLFGARG"
     gene            1180..1881
                     /locus_tag="U1335_001172"
     CDS             1180..1881
                     /locus_tag="U1335_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019795669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231659.1"
                     /translation="MSYIQVINSSKYYQMGDATIVANDSVSFEIEQGELVIILGSSGA
                     GKSTLLNILGGMDSNDEGEVWVDGVDIAKLSSHELTNYRRDDVGFVFQFYNLVANLTA
                     KENVELAAEIVKDALDAEEVLEQVGLGHRINNFPAQLSGGEQQRVAIARAVAKKPKIL
                     LCDEPTGALDYQTGKQVLQILQDMSRTQGATVIIVTHNSSLAPIADRVIRMRDARVHS
                     VELNADPQDIASLEY"
     gene            1881..5258
                     /locus_tag="U1335_001173"
     CDS             1881..5258
                     /locus_tag="U1335_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEM5231660.1"
                     /translation="MGETMKKKIYWKDMRQSLLSSKGRFLSIFSLMMLGALALTGLKV
                     TAPNMEKTAQGYIASHRTMDLAVISGLGLSQADLDELETIEGATLEAGYFKDVVTNEG
                     QTAIRLFSAPQNLSTYKVVEGEMPSQKGQIALSASFKNRYKLDDTVQVMESDKDGKIL
                     TQTSFTLVGFVASAEIWDNETMGMAASGDGQLGGYGLVSQDTFKSEVYTIARIRYDDL
                     VDLPYYSQAYQDRLDQHQEDLEKLLANNDEQRLATIQAEGQTEIDKGEAEIGQAQSQL
                     DQAAGELASGKDQLASGRREFARGRAKLVQSEMELRTVLAQLLQTKFQLDESKKELDN
                     QKDKLDQSKSFLDVSHEGLLETAQRLESAKQQLDSQNAQLSQTASQISTGRASWFQAQ
                     KELDLEIANHLQEGQTLSDYPDLLARQEGLDVEKSRLDQMESAHEQANQAYLQGYDYY
                     QTKQNEYNSNLAQYQTWNQEYQAGLARYQAGLSQYEQGIAAYNKGVEDYEWGLSQLES
                     SNQLLRQEELRLEEADKELSQAQSQFSEKKATADQEISQAQTEIAQAKSDLSKLEKAP
                     YQVYTRSSLPGGDGYTTYSNATRSIAAVGNVFPVVLYLVAALVTFTTMARFVDEERTQ
                     SGLLKALGYTNRQIMAKFILYGLAAGLVGTIVGIIAGNLLLSPLISDIITQTTVIGPA
                     KLHFYPLWTGLALLLSLASSVLPAYLVARRELTEKPAQLLLPKPPVTGSSIWLEKWPA
                     IWSRLSFTHKVTARNIFRYKLRMLMTIFGVAGTVALLFGGLGIRSSISGVVQRQFGEL
                     IHYDMLVVENSRATEEELDKLTHFLQSDQVRQSLPVAFEQLHQTVEENGQRKNLSISL
                     YISDRRDFGNQVSLESSTGQPIKLSDRGIVLTEKLAQIYGVSVGDKLSLTLEDKEVSV
                     RVEAVADMYAGHFIYMTDSYYEQVTGKQKTANAYLVQLKDSQLGHIQTLASQLLAMPA
                     VRSLVQNTSLIDMLTTIAGSLQTIMTILVILSILLGLVILYNLTIINMSERIRELSTI
                     KVLGFHNKEVTMYIYRETIALSLIGMLVGLVGGIYLHKLLLAMIGSDSIRFNPSVGLE
                     VYLIPILAISGILAALGWYVNHHLRKVDMLEALKSVD"
     gene            5556..6881
                     /locus_tag="U1335_001174"
     CDS             5556..6881
                     /locus_tag="U1335_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231661.1"
                     /translation="MCYNHLMKKISDLGLTGRKLVGEGLILVFIGIGFLIAGWQFPGL
                     ILRFVHAGLFFLALYELSMIFFRKKKSSESVIALVGKAVLFGILASLDLAVQIPLYFA
                     AIFVGIYQLFTAVINFITFYLYRKDGVQPRIRYLIDGIWLSLLGSASLFVSGTQLVVQ
                     TIVIGGYLVLYGLTNLRDGFLFEEAIEQQNLKRHVRLPLPLFLAALIPRMTLQKVNDY
                     LADNKGQTAQSIYNRHKEIAELPALEVFVHVGEEGFGAVGHVDLSYKGQVYGYGSYDV
                     LSERLGGAIGDGVLFKAERQAYIDFCNQEGMTMLGYQLSLTPEQEEAVEARLAEIDNL
                     LLPWNPSPEKVSKTADGQPIEMYAYRMKEEIGAALFKFKKSKFKTYFVLSTNCVLLAD
                     SVIGQAGTDVLGLRGFIAPGTYQSYLDQEYEKPYSLVVAKNIYYRKEKS"
     gene            6957..9593
                     /gene="polA"
                     /locus_tag="U1335_001175"
     CDS             6957..9593
                     /gene="polA"
                     /locus_tag="U1335_001175"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014932012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEM5231662.1"
                     /translation="MKKNKLLLIDGSSVAFRAFFALYNQIDRFKNANGLHTNAIYGFN
                     LMLDHMMKRIEPTHILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPFIRQMLDA
                     MGVKHYELDQYEADDIIGTLDKMAERTDIPFDVTIVSGDKDLIQLTDENTVVEISKKG
                     VAEFEEFTPAYLMEKMGITPAQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLTEFGSL
                     DGIYENIDSMKASKMKENLIADKEKAFLSRTLATIDTNAPIEIGLDDIVYQGPKVDEL
                     GQFYDDMGFKQLRAQLGTTSSQEEAVLDFQIVTEISPAMLKQDQFFYFEILGENYHRE
                     DLVGLAWGDKEKIYVGGPELLDSPVLRDFLEKQTIKTYDFKRGKVLLDRKEITLPPAT
                     FDSRLAKYLLSTVEDNSLTTIANLYGQTGLVPDEAVYGKGAKLDLPEREIFFPHLARK
                     VQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKMEIAGIKVEAETLKAMQSENE
                     VLIDQLTKEIYELAGQEFNINSPKQLGTILFEEMGLPLEYTKKTKTGYSTAVDVLERL
                     APIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGKIHTRYVQDLTQTGRLSSTDPNL
                     QNIPVRLEQGRLIRKAFVPSLEDSVLLASDYSQIELRVLAHISQDQHLIEAFQQGADI
                     HTSTAMRVFGIDKAEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGITRKEAKAYIDT
                     YFERFPGIKNYMETIVREARDKGYVETIYKRRRELPDINSRNFNVRNFAERTAINSPI
                     QGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETVKAMVKETMES
                     AISLSVPLIADENEGPTWYEAK"
     gene            9606..10361
                     /locus_tag="U1335_001176"
     CDS             9606..10361
                     /locus_tag="U1335_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEM5231663.1"
                     /translation="MKKIVLCIGLCSLLLAGCGKTAQKTEKTPASSGEEFSTTLPILQ
                     EKQDTTNEQFNVLANAELIAVNSTPPADETQKGHKIYAANNGVAEKDENGNIKEYFRY
                     YDVPSTWTINAENTKDETVAAVYDVKEGSSNYMVQLYNINAFNQSPLEDGRNMMPEEL
                     EARMLETNHSFSEKTVVTINGQEWQVGRQLLTDQKLARLTFYRMESTAAYDDSVVVGS
                     IYYSLDPGTDKDRTNLKKVIGQVKDVVYQIAKK"
     gene            10481..>10894
                     /locus_tag="U1335_001177"
     CDS             10481..>10894
                     /locus_tag="U1335_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEM5231664.1"
                     /translation="MSYSFQNPSQDIIFDYLRNAKTIAVVGLSSREETAAYRVSKLMQ
                     EAGYKIIPVNPKAAGGTILGELVYSSLAEIDQPIDIVDVFRRSEFLPEVAQEFIQSNA
                     KIFWAQLGLESQEAEKLLRQAGRNDIVMNKCIKIEY"
BASE COUNT         3194 a         2190 c         2543 g         2967 t
ORIGIN      
        1 aaggaactga aactgtcctt tgaagtctct tctgaagcaa ctgatttttc aaaattgatt
       61 gccgttgacg gaaaaacgat tcgggggaac cgaggaaaac accaatcccc tactcatatt
      121 gtcactgcct atgatggtgg taatcggctt agtcttggtc aggtagctgt tgaggataaa
      181 agtaatgaaa tcacagccat tcctcgcctc ttgcgtcagc tagaccttcg taagagtgtt
      241 gtcacgattg atgcgatggg aacacagact gatatagtgg atgtgattat cggcggtaag
      301 ggtgattatt gcttggcagt caaaggaaat caaggcaatc tccatgagga tattgacctc
      361 tattttagcg atgccaaatt gttatctaag ttgacggcga aaggctgtca ttatcagacc
      421 attgcaaagg cacgcagtca gattgaggta agggactact ggatttctca cgatgtgaaa
      481 tggctgagcc aacgacatcc gaaatggaaa aaacttcgtg gaattggtat ggctaagaat
      541 accattgata aagacggtat catcacggaa gaagttcgtt actttatcct tagtttcaag
      601 ggtgatgtgc agacattttc acagatagtt cggggacatt ggtcggttga gagcctacat
      661 tggttattag atgtggttta ccgagaagat aagaaccaaa ccttagataa acgagctgct
      721 ttcaatttaa atgctattcg taaagtttgt cttcatcttt tacaaaatat gacattccct
      781 aaggagaagc tgagttaccg gcgtaaacaa cgctatattt ctgtccattt ggagaattat
      841 ttgccacaat tatttggggc aagaggataa ggtggttgta taaaggtagg tactaagttt
      901 aaagcagtta tttccgggga caaaaggaga taagaaattt ttcatgcgta tgacgtggat
      961 gttaagggag tgggacaaaa atcggtaacc cgcagggttc gatgagtcgt tagcccaccc
     1021 ccgcacagtt gagtagggct gtaaaagctg ataaaatcag ctaattagag cccactcaac
     1081 cactgcgtca agtttaacta ttgaaaaaaa ctaaggaggc caggactttt gtcccagcct
     1141 ctttatgtta taatattact aagaaaagcg aggtgtacca tgtcctatat ccaagtaatc
     1201 aattcgtcaa agtactacca aatgggggat gcgaccattg tggccaatga cagcgtgtcc
     1261 tttgagattg aacaggggga gctggtcatc attcttggct catctggtgc gggcaaatcc
     1321 actctgctca atatcttagg gggcatggac agcaacgatg agggggaggt ctgggtggac
     1381 ggtgtggata ttgccaagct atccagtcat gaactgacca attatcgtag agatgatgta
     1441 ggttttgtct tccagtttta caatctggtt gccaacctga ctgccaagga aaatgtggaa
     1501 ctggctgcag aaatcgtcaa ggatgccttg gatgccgagg aggtcttgga acaggttgga
     1561 ctcggtcacc gaatcaataa tttccctgct cagctttcag gtggtgagca gcaacgtgtg
     1621 gccattgccc gtgctgttgc caaaaagcct aaaattttgc tttgcgatga accgacaggc
     1681 gctctggact accaaacagg taagcaggtc ttgcaaatcc tacaagatat gtcccgcaca
     1741 caaggggcaa ccgtgattat cgtgacccac aatagttctc tggctcctat tgctgacagg
     1801 gtcattcgga tgcgggatgc ccgtgtgcac tctgttgagc tgaacgcaga tccgcaggat
     1861 atcgctagtc tagaatatta gtgggtgaaa ctatgaaaaa gaaaatctac tggaaggata
     1921 tgagacaatc tctgctttct tccaaggggc gttttttgtc catatttagc ctgatgatgc
     1981 taggagctct agctttgaca ggtctgaaag taacagctcc caatatggaa aagacggccc
     2041 aaggctatat agccagtcat cgaacgatgg atttggcagt aatttcaggt ctgggactta
     2101 gtcaagctga ccttgacgaa ttagaaacga tagaaggtgc tactcttgaa gcgggctact
     2161 ttaaagatgt ggttactaat gaaggccaga ctgcaattcg gctgttttca gctccccaga
     2221 acctatcgac ctataaggta gtagaagggg aaatgcccag ccaaaagggg caaatagccc
     2281 tatcagcttc tttcaaaaat cggtacaaat tggacgatac tgttcaagtg atggagtctg
     2341 ataaggatgg aaaaatcttg acacagacga gttttactct tgtgggcttt gtcgcatcag
     2401 cagaaatttg ggacaatgaa accatgggca tggctgcaag tggtgatggg cagttaggtg
     2461 gctatggcct tgttagtcag gataccttca aatcagaagt ttacactatt gcccgtattc
     2521 gctatgatga tttggttgat ttaccatatt acagtcaggc ctatcaagac aggttggacc
     2581 agcaccaaga agacttagaa aagttattgg ctaacaatga tgaacaacga ttggcaacca
     2641 ttcaagcaga agggcaaacg gaaattgata agggagaagc agagataggc caagctcaat
     2701 ctcagctgga tcaagcagca ggagaattgg catctgggaa agaccagctc gcaagtggtc
     2761 gtagagagtt tgcgcgtggt agggccaaac tagttcaatc ggaaatggaa ttgcgaaccg
     2821 tccttgctca attgttgcaa accaagtttc aattggatga aagtaaaaaa gagttggaca
     2881 accagaagga taaactagac caaagcaaat cttttttgga tgtaagtcac gagggactac
     2941 ttgaaactgc tcaacgcttg gaaagtgcca aacagcaact ggattcccaa aatgcccaac
     3001 tgagtcagac cgcatctcag atttccacag ggcgagctag ttggtttcaa gctcagaaag
     3061 agttagacct tgaaattgcc aatcacttgc aagaaggcca aaccctctca gactatcctg
     3121 acttattggc tagacaggaa ggtttggatg ttgagaaaag ccgattagac caaatggaat
     3181 ctgcacatga gcaggccaac caagcctatt tacaaggtta tgattactat caaaccaaac
     3241 aaaatgaata caatagcaat ctagcccagt accaaacttg gaatcaagaa tatcaggcag
     3301 gtttggcccg ttatcaagca ggtttgagtc agtatgaaca aggcattgca gcctacaata
     3361 aaggagtaga agactatgaa tggggactga gtcagttaga gtcttcaaat caactgctcc
     3421 gtcaggaaga actccgtttg gaggaggctg ataaagagtt aagtcaagct caatcccaat
     3481 tttctgagaa gaaagccacg gccgatcaag aaattagcca agctcaaacc gagattgctc
     3541 aggctaaatc cgacttaagt aagctggaaa aagcgcccta tcaggtctat actcgatcaa
     3601 gcctaccagg tggagatggc tatactacct atagcaatgc gactaggtct attgctgcag
     3661 tgggcaatgt cttcccagtt gttctctacc ttgtcgcagc tctagtgact tttaccacca
     3721 tggcccgttt tgtcgatgaa gagcgaacac agtcaggtct cctcaaggcc cttggctata
     3781 cgaatagaca gattatggct aagttcattc tctatggttt ggcggcaggt ctggtaggaa
     3841 caatagtcgg tataatagca ggtaatctcc tcttgtctcc acttatttcc gacattatta
     3901 cgcagacaac cgtgattgga ccagctaaac ttcattttta tcccctttgg acaggtttag
     3961 ccttgcttct gtctttggct tcctcggtcc tgccagctta cttggtggct cgtcgggagc
     4021 tgacagaaaa acctgctcag ctacttttac ctaagccacc ggttacaggc tccagcattt
     4081 ggctagaaaa atggccagct atctggtccc gcctgagctt cacccacaag gtgacagccc
     4141 gcaatatctt ccgctacaag cttcgtatgc ttatgaccat ctttggagta gcagggaccg
     4201 tcgcccttct ttttggagga ctgggtatcc gttcctctat ttcaggagtt gtccaacgac
     4261 agtttgggga gctgatccat tatgatatgt tggtggtgga aaatagcaga gctactgagg
     4321 aagagttgga taagttaaca cattttcttc agtcagatca ggttcgccaa tccttgccag
     4381 tggcttttga acagctccat caaacggtgg aagaaaacgg tcagagaaag aatctatcga
     4441 ttagtctcta catttcagac cgtcgggatt ttggaaatca agtcagtctg gaaagttcga
     4501 caggtcagcc tattaaactg agtgacagag ggattgttct cacagaaaaa ttggcgcaaa
     4561 tctacggggt ctctgttggt gataagttat cactgacctt ggaagataag gaagtttcag
     4621 tcagggtaga ggctgtggct gatatgtacg cagggcattt tatctatatg acagatagct
     4681 actacgaaca agtgaccggc aagcagaaga ctgccaatgc ctatctggtt cagttgaagg
     4741 acagtcagtt ggggcatatt cagactcttg caagtcaact cctagcgatg ccagcagtca
     4801 gaagtttggt tcaaaatact tctcttatag acatgcttac cacgattgcg ggctcgcttc
     4861 agaccatcat gaccattctg gtcattctat ccatcttgct tggcttggtt attctttaca
     4921 accttacaat tatcaatatg tccgaacgga ttcgtgagtt atccaccatc aaggtactgg
     4981 gcttccacaa taaagaggtg accatgtata tctatcgtga aaccattgcc ctttcgctga
     5041 ttggcatgtt ggttggactg gttggtggta tttatctcca caagctcctt cttgccatga
     5101 ttggttcgga cagtatccgc ttcaatccat ctgtcggact agaagtctat ctcattccta
     5161 tcttagccat tagtggaatt ttggcagctc ttggttggta tgtcaatcac catctaagaa
     5221 aggtggatat gctggaagcc ttgaagtcgg ttgattaggg agtgggaaag aactcgagtg
     5281 gtctaaaaag agttcgtctt cccacccccg cacagttgat taggttggat ttggagtgta
     5341 aaacacgaac aaatccgcca atcaaccact gcgctgagat gttgacacga actctaagaa
     5401 gtggtgctgg gctttttgcc cagcctctaa cccgagccta aaaatacgaa agcggatagt
     5461 ttgtattgtg aactaatttg aaatatgaga aacacagcta taaagcaaaa aaatcctagt
     5521 gcatctagga tttttttgca aacctaagtc tagaaatatg ctataatcat ctcatgaaaa
     5581 aaataagtga tttaggatta acaggtcgaa aattagttgg agaaggtcta atcttagtct
     5641 tcatcggtat tggattttta attgctggtt ggcaatttcc aggactgatt cttcgatttg
     5701 ttcacgcagg tctattcttt ttagctttat atgaactgag catgatattt ttcagaaaga
     5761 agaaatcgag tgaaagtgtc attgcgctag ttgggaaggc tgttcttttc gggatcctag
     5821 ccagtctcga tttagctgtt caaattcccc tctatttcgc ggctattttt gttgggattt
     5881 atcagctttt tacggcagtc attaatttta ttacttttta cctatatcga aaagatgggg
     5941 tacagccacg gattcgctat ttaatagatg gaatttggtt atccttacta ggttcagctt
     6001 ccctatttgt gtcaggcaca cagctggttg ttcaaaccat tgtcatcgga ggttatctgg
     6061 tcttgtacgg actaactaat ctgcgtgatg gcttcttgtt tgaggaggct attgagcaac
     6121 aaaatcttaa gcgccatgtc cgtttgcccc tacctttatt tttggcagct ttgattcctc
     6181 gtatgaccct gcaaaaagtc aatgattact tggcggataa taagggacaa acggctcagt
     6241 ctatctacaa ccgccacaaa gaaattgcgg agcttccagc attagaagtc tttgtacacg
     6301 ttggggaaga agggttcgga gcagttggac atgttgattt gagttacaaa ggacaggttt
     6361 atggttatgg ttcatacgat gttctgtctg agcgtttggg tggtgcgatt ggtgatggag
     6421 tcttgttcaa agcagagcgc caagcttata ttgatttctg taaccaggaa ggtatgacca
     6481 tgttgggtta tcagctaagc ctgacacctg aacaggaaga agcagttgag gctcgattgg
     6541 ctgaaattga taatctgctc ttaccttgga atccaagtcc tgaaaaagta tcgaaaacgg
     6601 cagacggcca gcctatcgaa atgtatgcct atcgaatgaa agaggaaatt ggggcagcac
     6661 ttttcaaatt taaaaaatca aaattcaaaa cctactttgt cctctcaacc aactgcgtcc
     6721 ttttggctga ttcagtaatc ggtcaagcag gaacagatgt cctaggcttg cgcggcttca
     6781 ttgctccagg aacctaccaa tcttacctag atcaagaata tgagaaacct tatagtttag
     6841 tagtcgcaaa gaacatttat tatcgaaaag aaaaatccta gtcactgact gggattttct
     6901 gttattctag ctctctaagt cccacaaaac tcccccatcc atgctataat agaaacatga
     6961 aaaaaaataa attattactc atcgatggct catcggtagc cttccgtgcc ttttttgcac
     7021 tttataacca aatcgaccgc ttcaagaatg ccaatggtct gcataccaat gccatatacg
     7081 gcttcaatct catgttggac cacatgatga agcggattga gccgacccac attcttgtgg
     7141 cttttgatgc tggaaagacc actttccgta cggagatgta tgcagactat aaggcaggtc
     7201 gtgccaagac tccagacgaa ttccgtgagc agtttccttt tatccgtcag atgttggatg
     7261 ccatgggagt caagcattac gaactggatc agtatgaggc agacgatatt atcggtacct
     7321 tggacaaaat ggcagagcgg acagacatcc ctttcgatgt aaccattgtc agcggtgaca
     7381 aggacttaat ccagctgaca gacgaaaaca ccgtagtcga gatttctaag aaaggcgtag
     7441 ccgaattcga agaatttacc ccagcctacc tcatggaaaa aatgggtatc actcctgctc
     7501 agtttattga cctcaaggct ttgatgggag ataagtccga taacattcct ggcgtgacca
     7561 aaatcggtga aaaaacaggc ctaaaactcc tgacagaatt tggttctttg gatggaatct
     7621 acgaaaacat cgacagcatg aaggcttcaa agatgaagga aaacttgatt gctgataagg
     7681 agaaggcctt cctatctcgt acacttgcta ccattgacac caatgctcca atcgaaattg
     7741 gtctggatga cattgtttat caaggcccta aggtggatga actaggacaa ttttatgatg
     7801 atatgggctt caagcaatta agggctcagt taggtacgac cagctcgcaa gaggaagcgg
     7861 tactcgattt ccaaatcgta acggaaatca gccccgctat gctcaaacaa gaccagtttt
     7921 tctattttga aatcttgggt gaaaattatc accgagagga tttggttggt ttagcttggg
     7981 gagataaaga gaaaatctat gtcggagggc ctgagctact tgatagtcca gtcttgcgtg
     8041 actttttaga aaaacaaacc ataaaaacct atgattttaa gcgtggaaaa gttcttctcg
     8101 accgaaaaga gattacgcta cctcctgcta ctttcgatag ccgtctagcc aaatacttgc
     8161 tttccaccgt tgaggacaat tccctaacaa ccattgccaa tctctatggt cagaccggtc
     8221 ttgttccaga tgaggcagtt tatggcaagg gtgctaagtt agacttgcca gaacgcgaga
     8281 tctttttccc acacttggca cgtaaggttc aggttttgat tgagacagaa gagccgatgt
     8341 tgaccaaatt agaagaaaat cagcaattag atcttttgtt tgacatggag ttgccactgg
     8401 caaatgtttt agctaagatg gaaattgctg gtattaaggt ggaagctgag actctcaaag
     8461 ctatgcaatc tgaaaacgaa gttttgattg accagttgac caaggaaatc tatgaactag
     8521 ctggtcagga atttaatatc aattcgccta agcagcttgg gaccattctc tttgaagaga
     8581 tgggactacc gttggaatat accaagaaaa ccaagacagg ctattcaaca gcagtagatg
     8641 tcttagaacg attagcgcca attgcaccag ttgtttcaaa aatcttggaa taccgtcaga
     8701 ttaccaagct tcaatcaact tatgtagtcg gcttgcagga tgccatttta gaagacggga
     8761 agattcatac ccgctatgtg caggacttga cacaaacagg tcgcctatct tcgacggacc
     8821 ctaacttgca aaatatccct gttcgtctag aacaagggcg cttgattcgt aaggcatttg
     8881 tgccatcgct tgaggacagt gtcctcttgg cttcggatta ttcccagatt gaattgcgcg
     8941 tcttggctca tatttctcag gaccagcatt tgattgaggc cttccagcaa ggtgcagata
     9001 ttcacacttc gacagctatg cgggtattcg gtatcgacaa agctgaggat gtgacaccaa
     9061 atgaccgtcg gaatgccaag gctgtaaact tcggtgttgt ctatggtatt tcagatttcg
     9121 gtctatccaa taacttgggg attacacgta aggaagctaa agcctatatc gatacctatt
     9181 ttgaacgctt cccaggaatt aagaattaca tggaaaccat tgttcgtgag gcacgtgata
     9241 agggttatgt agagacgatt tacaaacgcc gtcgtgaatt accagatata aactctcgca
     9301 atttcaatgt ccgtaatttt gcggaacgaa cagccatcaa ctcaccaatt caaggttcgg
     9361 ccgcagatat tctcaaagta gccatgatta atcttgacaa ggctttgact gaagcaggtc
     9421 ttgcgacacg tatgttattg caagtacacg atgagattgt tttggaagtc ccagtggcag
     9481 agctagaaac ggtaaaagcc atggtaaaag agaccatgga atcggcgatt agcctgtctg
     9541 taccattgat tgcggatgaa aatgagggac cgacatggta tgaagctaag taagaaagga
     9601 agagtatgaa aaagatagtt ctttgtattg gtctatgtag tcttttgctc gcaggttgtg
     9661 gaaaaacagc gcagaagact gagaaaacac cagcttcctc aggggaagag ttttcaacca
     9721 ctttaccgat tttgcaagaa aagcaggata ctacgaacga acagttcaat gttctagcaa
     9781 atgcagagct tatagctgtt aatagtacac cacctgctga cgaaacacaa aaaggccaca
     9841 agatttatgc ggccaataat ggtgttgctg aaaaagatga aaatgggaat atcaaggaat
     9901 atttccgtta ttatgatgtg ccatctactt ggacaattaa tgcagaaaat actaaggatg
     9961 agacggtcgc tgcagtctat gatgttaaag aaggttccag caattacatg gtccaactct
    10021 ataatatcaa tgcttttaat cagtctccat tggaagacgg tcgcaatatg atgccggagg
    10081 aattagaagc acggatgctt gaaacaaatc attctttcag tgaaaagacg gttgtcacaa
    10141 tcaatggtca ggaatggcag gttgggcgac agttattaac agatcaaaaa ttagctcgtc
    10201 tgacttttta tcggatggaa tcaacagctg cttatgatga ctccgtggtt gtgggttcaa
    10261 tctattattc cttagatcca ggaaccgata aagatcggac caatcttaaa aaggttatcg
    10321 ggcaagttaa ggatgtcgtg taccaaattg ctaaaaaata atcaaggtag acaagctata
    10381 atcagtaacg agttaaaact gacaagattg tgttatagca caccttattc attaagcttt
    10441 tattgattct aacatttaat atacattaaa ggaggtctct atgtcttatt ccttccaaaa
    10501 tcctagtcag gacattatct ttgactatct gagaaatgct aagaccattg cagtggtcgg
    10561 tttgtctagt cgagaagaga cagcagccta ccgcgtttcc aagctcatgc aggaagcggg
    10621 ctataaaatt attccagtta atcccaaggc tgctggtggg actattttag gcgagttggt
    10681 ctatagtagt ctagcagaga ttgaccaacc tattgatatt gtagatgttt tccgcagaag
    10741 tgaattttta ccagaggtag cacaggaatt tatccagtcg aacgccaaaa ttttctgggc
    10801 tcaactcggt ttagaaagcc aagaagcaga aaaactattg cgtcaggcag gtcgtaacga
    10861 tattgtcatg aataaatgta tcaagattga atat
//
LOCUS       DASGAC010000060        10855 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.060, whole genome shotgun sequence.
ACCESSION   DASGAC010000060 DASGAC010000000
VERSION     DASGAC010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10855)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10855)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10855
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.060"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            44..397
                     /locus_tag="U1335_001178"
     CDS             44..397
                     /locus_tag="U1335_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2500 domain-containing protein"
                     /protein_id="HEM5231665.1"
                     /translation="MFENLFAPDGSLVWHTVLFYSFSAIILATVCFHIIKNFMEWHHN
                     NREPKESCKAKLVSKRTHVFGNEVARTNYYVTFEWEGKRQEFRLRSDEYALLAEGDVG
                     TLHFQGTRFLGFERL"
     gene            482..859
                     /locus_tag="U1335_001179"
     CDS             482..859
                     /locus_tag="U1335_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase/bleomycin resistance/extradiol
                     dioxygenase family protein"
                     /protein_id="HEM5231666.1"
                     /translation="MIQSIGQVMLYVNDIEASAQFWKEKMGFERVEKQVQGPQTSYII
                     APKSDSEVQFVLHDKAEVAEMEPELNLGTPSILMTSVDVAKTYEELVERGVTTNPVMD
                     LGFMKVISFADNDGNYYAIREVK"
     gene            860..1405
                     /locus_tag="U1335_001180"
     CDS             860..1405
                     /locus_tag="U1335_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231667.1"
                     /translation="MSLQNRVEEMYKDHEVKPYISPERDLATWLLEAKPVPKRNMVRL
                     QEGILPGDIILLWRIRLGSFETTTPYSKYFEYMYGINGPAHMEQLIVDGYAYVESAFD
                     SLDHITSTAKKNILKAEGVTGLSKMKAADLDTALKDNLTEEKLAPYFTVRGYALTEKG
                     RAALDNHPEVLAKHPMKKMYK"
     gene            1562..2551
                     /locus_tag="U1335_001181"
     CDS             1562..2551
                     /locus_tag="U1335_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM5231668.1"
                     /translation="MEEQKSITMKDVARVAGVSVGTVSRVINNEPGIKESTLEKVNAA
                     IKELNYIPDVYARGMKKNKTETIALIIPTVWHPFFGEFAYHVEVELSKKNYKLLLCNI
                     SGPKRELDYLTMLQQNKVDGIIAITYSPIDDYLSSNIPFVSIDRTYENKAIACVSSDN
                     QAGAELAADILIEKGGSQFAFIGGHNKTINETKKRRIYFEKRILEAGFPCHVLDLEEP
                     YDDFVGEVEKFLTSHPQIDASFTINDFVALDTLAVLEKLGRRVPEDVQIIGYDGIQLA
                     SERSLELSTIRQPLEAMAQEAVACLVDIIEKRERPLQVTLPISYLEGKTTKNF"
     gene            2713..3633
                     /locus_tag="U1335_001182"
     CDS             2713..3633
                     /locus_tag="U1335_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5231669.1"
                     /translation="MKTSKLQQASLFDRIKQQKLLLLMLLPGLVLTFIFRYIPMYGVL
                     IAFKDYNPLKGVLGSEWIGFSEFTKFLSSPNFGNLLANTLKLSVYGLLLGFLPPIILA
                     IMLNQLLSDKAKKRIQLVLYAPNFISVVVVVGMIFLFFSVGGPVNSILGMFGIEANFL
                     TDPDFFRPLYILSGIWQGMGWASTLYTATLVNVDPALIEAAKLDGANIFQRIWHIDLP
                     ALKPVMVIQFILAAGGIMNVGYEKAFLMQTSLNLTSSEIISTYVYKIGLVSGDYSYST
                     AVGLFNAFINIILLIAVNKIVQRINDGQGL"
     gene            3643..4530
                     /locus_tag="U1335_001183"
     CDS             3643..4530
                     /locus_tag="U1335_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM5231670.1"
                     /translation="MNTQMYTKFDKRMLIVNKILLAFLVLITVVPMVYILVASFMDPQ
                     ALVSKGISFDPKDWTVEGYQRVFSDKSILRGFFNSLFYSFSFAFVTVAISVMTAYPLS
                     KKDLVGKKWINAFLVFTMFFGGGLVPTYLLVKDLGMLNTVWAIIIPGAVNVWNIILAR
                     TYFQGLPDELVEAAVMDGANEFQIFWKIMIPLAKPIMFVLFLYAFVGQWNSYFDAMIY
                     IKDPDLEPLQLVLRKILIQSEPAKDMIGAQAAMNEMKRIAEMIKYATIVISSLPLIVM
                     YPFFQKYFDKGIMAGSLKG"
     gene            4732..6342
                     /locus_tag="U1335_001184"
     CDS             4732..6342
                     /locus_tag="U1335_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000669747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5231671.1"
                     /translation="MKHKFGKTVVTLLASTVLLAACGSKNTASSPDYELKDVQFPLEK
                     SVTLKFMTASSPLAPADPNDKLIFQRLEEETGVHIEWTNYQSDFGEKRNLDIASGDLP
                     DAIHNDGASDVELMNWAKQGVIVPVEDLIDKHMPNLKKILDENPEYRSMITAPDGHIY
                     SFPWIEELGEGKESIHTVSDIAWINKEWLNKLGLEMPKTTDDLIKVLEAFKTKDPNGN
                     GKADEIPMSFVNGNGGEDFKILFGAFGVGDNDEHIVVNNDGTVDFTADNEDYKEGVEF
                     MRTLQEKGLIDPEAFEHDWNTYLAKGSENLYGVYFTWDKANITGMNDTYDILPVLAGP
                     DGTKHITRTNGMGFQRDRMVITSANKNLELTAKWIDAQYKPIQSVQNNWGTYGDENQQ
                     NIFELDTATNSLKHLPLNGTAPGELRQKTEVGGPLAILDEYYGTVTTMPDDAKWRLDL
                     MHATYLDYVTNDDIYPRVFMEQEDLDKIAQVEADMNDFIYRKRAEWIVNGGIEEEWDS
                     YLKELESYGLSDWLAIKQKYYDQYKENQ"
     gene            6360..7712
                     /locus_tag="U1335_001185"
     CDS             6360..7712
                     /locus_tag="U1335_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
                     /protein_id="HEM5231672.1"
                     /translation="MKTVVEANQFIQTEKGKVNPIFKPQAHLTPETGWMNDPNGFIYF
                     RGEYHLFYQFNPYESVWGPMHWGHAKSKDLVNWEQLPVALAPDKAYDKDGCFSGSAIV
                     KDDVLWLMYTGHIVNEDGTVSQVQNMAFSTDGIHFEKIDQNPVATAEGLPEEVIANDF
                     RDPKIFEKDGHYYSVVATKHKDNVGCIVLLGSPNLTDWQFESIFLKGENHQGHVWECP
                     DYFEVDGQEYLIISPMRYQKDGNDFININSNIFVTGHVDWDKKVFVADSFKEIDHGHD
                     FYAAQTTEGPEGERVMVAWMHTWGRKLVTNDLGHKWYGQMTLPRILKKTENGLHQVLP
                     TSVLNSFDDIEIGQSIQGPSKLTLKLDDSLELKLGNDLDYLQFGYDKERQEVYIDRSH
                     LKIQQAGEEEWPTVRRAVTVQATDLLVLVDTNCVEILVNDGQESLTSTFYVEGERVIK
                     "
     gene            7836..10205
                     /locus_tag="U1335_001186"
     CDS             7836..10205
                     /locus_tag="U1335_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEM5231673.1"
                     /translation="MRKTSKKGKATRRPTKAELAQQERVKNITLRVLGLLFIAFAASR
                     LGVFGVTSYNIFRLLFGSLAYLLLAGAFIYLLIPKVLREREGAISGFWLIVIGLLIEF
                     QAYLDWTYQGSDLFGHTLKLALSDLAKFQVTAFLGGGMIGSIFYLPVSFLFANVGSFF
                     IGLLVIAFGIFFVSPWSVYDVADGLAVAKDKLVETQVKRAELRTQKKAEREEKRQQEL
                     ARLEEERLRLEEEEESARALALVDRHVDLETGEILEEEPVQVPIISEYDHLDIEDEFP
                     IMLAEDDQPAQSNSASQASDPNEFEKDETDVEIDFKPKQRLAYKLPSIDLFAPIKAKS
                     QSNEKRIVRQNIKVLEDTFASFGIKVVVERAEIGPSVTKYEVKPAVGVRVNRISNLAD
                     DLALALAAKDVRIEAPIPGKSLVGIEVPNSEVATVPFRELWEQSKTDPDKLLEIPLGK
                     AVNGSVRSFNLARMPHLLVAGSTGSGKSVAVNGIISSILMKAGPDQVKFMMIDPKMVE
                     LSVYNDIPHLLIPVVTNPRKAARALQKVVDEMEKRYELFSQIGVRNLEGYNAKVEEFN
                     SRSEEKQIPLPLIVVIVDELADLMMVASKEVEDAIIRLGQKARAAGIHMILATQRPSV
                     DVISGLIKANVPSRIAFAVSSGTDSRTILDENGAEKLLGRGDMLFKPIDENHPVRLQG
                     SFISDDDVEAIVGFIKDQADADYDESFDPGEVAEGDGDAGFGDAGGDPLFNEARALVV
                     ETQKASASMIQRRLSVGFNRATRLMEELEAAGVIGPAEGTKPRKVLETQ"
     gene            10205..10591
                     /locus_tag="U1335_001187"
     CDS             10205..10591
                     /locus_tag="U1335_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002931159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5231674.1"
                     /translation="MKFDAVHHIAIIGSDYDKTREFYVEKLGFEQVDEHIRPEKNDIL
                     FNVKKGNLILEIFIKPDAPMRPAMPNPEHTGLRHLAFQVADVEACLEEFDRLGIRHEA
                     LRTDDFDGKKMAFFFDPDGLPLEIHE"
BASE COUNT         3244 a         2192 c         2407 g         3012 t
ORIGIN      
        1 taatatgata tactatgttt acagatacaa aaggagaata atgatgtttg agaacttgtt
       61 tgccccagat ggaagcctag tatggcatac ggtccttttc tacagttttt ccgcgatcat
      121 attagcgacg gtttgtttcc atattattaa aaattttatg gaatggcacc acaacaatcg
      181 ggagcccaaa gaatcttgca aggctaagct tgtctctaaa cgaacccatg tttttggtaa
      241 cgaagtagca cgaaccaatt attatgtaac gtttgaatgg gagggaaaac ggcaggaatt
      301 tcgccttcgt tcagatgaat atgccctttt agcagaggga gatgtaggca ccctgcattt
      361 tcaagggact cgtttcctag gttttgaacg gctctaagag tcgtttttct ttggagaata
      421 tctctatcta gtgtataatg gtttgaacac atgttcgtac aacgcaaaag aggtatttaa
      481 gatgattcaa tcaatcggac aagttatgtt atatgtgaat gatattgagg cttcagctca
      541 attttggaaa gagaaaatgg gatttgaacg tgtagaaaaa caagtgcaag gcccccaaac
      601 ttcttacatt attgcaccta aatcagatag tgaggtacaa tttgtacttc atgataaggc
      661 ggaggttgct gaaatggagc cagaattaaa cttaggtaca ccatcaatct taatgacatc
      721 agtagatgta gccaaaactt acgaagaact tgttgaacgt ggtgtcacaa cgaatccagt
      781 catggacctt ggtttcatga aggtaattag ctttgcagac aatgatggaa attattacgc
      841 aattcgtgag gtaaagtaaa tgtcactcca gaatcgtgtt gaagaaatgt ataaggacca
      901 tgaggtcaag ccctatatct ccccagaacg cgacctggca acttggctat tagaagccaa
      961 gccagtgccc aaacgcaata tggttcgtct gcaagaagga attttgccag gagatattat
     1021 tttattatgg cggattaggc tgggttcttt tgaaacgacg acaccctact caaaatattt
     1081 cgagtatatg tatggtatca atggtcctgc tcacatggag cagttgatcg tagacggtta
     1141 tgcctatgtg gaatcggcct ttgattccct agaccatatc acctcgactg ccaagaaaaa
     1201 tatcctcaaa gcagagggtg tgacaggcct gtccaagatg aaggcggcag acctcgacac
     1261 tgccctcaag gacaacttga cggaagaaaa actggctcct tactttaccg tcagaggtta
     1321 tgccttgacg gaaaaaggca gagctgctct cgataatcac ccagaagtac ttgcaaaaca
     1381 cccaatgaag aagatgtaca aataaaaaaa gaatagattt ttgaacggca cccaaaagtt
     1441 ggaatcattc tagctttttg ggtgttttta tttgctaata agtctatttc ccttgacaga
     1501 aaacgctatc aatgatattc tagtataaat tattgaaacg tttcaaaaga aaggggtaac
     1561 catggaagag caaaaatcaa ttactatgaa agacgttgcg cgggttgctg gtgtaagcgt
     1621 tgggactgta tcaagagtta tcaacaatga gccaggtatc aaggaaagta cgcttgaaaa
     1681 agtcaatgct gccattaagg aattgaatta catcccagat gtctatgctc gtggcatgaa
     1741 gaagaacaag accgaaacca ttgccttgat tattccgaca gtttggcatc ctttttttgg
     1801 agaatttgcc tatcatgttg aagtggaact gagtaagaaa aattacaagt tgctcctttg
     1861 caatatttct ggtccaaaaa gggaactgga ttatctgact atgctgcaac aaaataaggt
     1921 ggacggcatt attgctatca cttatagccc gattgacgat tacctatcgt ctaatatccc
     1981 ctttgtcagt atcgatcgca cctatgaaaa caaggccata gcttgtgtca gctcggacaa
     2041 ccaagcagga gcagagctag cagcggacat cttgattgaa aaaggtggta gccaatttgc
     2101 ctttattggc ggacataata aaaccatcaa cgaaaccaaa aaacgcagaa tctatttcga
     2161 aaaacggatt ttagaggcag gttttccttg tcatgtcttg gacttggaag aaccctatga
     2221 tgattttgtt ggggaagtcg agaaattttt gacctcccac ccacaaattg atgctagttt
     2281 caccatcaat gatttcgtag ctctagacac acttgctgtt ttggaaaaac tgggacgacg
     2341 tgttccagaa gatgtccaga tcattggcta tgacggtatt cagttagcaa gtgaacgctc
     2401 tctagaactt tctaccattc gtcagccatt ggaggctatg gcccaagaag cagttgcctg
     2461 tttagtcgac attattgaga aaagagagcg ccctctccaa gttacattac caatttctta
     2521 cctagaagga aaaacgacaa aaaattttta aaaaggtagt tgacagaaaa cggttacaat
     2581 gataaaataa aatcatcaat aaacagttgg ttttattttt acaagaaaaa tgaaacgttt
     2641 caaaaaaaca aatagaggtt ccatcctctt tctaaaataa agaattttga aacgtttcaa
     2701 aaaggagttc ttatgaaaac atcaaaactg caacaagcta gtctattcga tagaatcaag
     2761 caacagaaac tcttgttact gatgttacta ccaggcttgg tcttgacctt cattttccgt
     2821 tacattccta tgtacggggt gctgattgcc ttcaaggact acaacccttt aaaaggtgtg
     2881 ctaggcagtg agtggattgg attttcggaa tttaccaagt ttctttcatc tccaaacttt
     2941 ggtaatttgc ttgccaacac cttgaaattg agtgtctacg gcttactctt aggatttctt
     3001 cctccgataa ttttagccat catgctcaat caactattga gcgataaggc taaaaaacgg
     3061 attcagttgg tgctctatgc tccaaacttt atctcagtcg tggtcgtcgt cggtatgatt
     3121 ttcctcttct tctcagtagg aggaccggtc aattccatcc taggtatgtt tggcattgaa
     3181 gcaaacttcc tgacagaccc agacttcttc agaccgctct atattctcag tggtatctgg
     3241 cagggaatgg gctgggcgtc gactctttac acggctacct tggtcaatgt tgatccggcc
     3301 ttgattgaag cggcgaaact agacggtgcc aatatcttcc aacgtatctg gcatattgac
     3361 ttaccagcac taaaaccagt tatggtcatt cagtttatct tagcagctgg gggcatcatg
     3421 aacgttggtt acgaaaaagc cttcctgatg cagacttccc tcaacctgac cagttctgag
     3481 attatctcaa cctatgtcta taaaatcggt ttggtgtcag gggactactc ttactcaaca
     3541 gcggttggtt tgttcaatgc ctttatcaat attatcctgc tgattgcagt caataagatt
     3601 gtccaacgca ttaacgacgg acaaggctta taggaggttc gtatgaatac acaaatgtac
     3661 acaaaatttg acaagcgaat gctgattgtc aataaaatct tgctggcatt tcttgttctc
     3721 ataacagttg tgcctatggt ctatatccta gtcgcgtcct tcatggatcc gcaggctttg
     3781 gtcagcaagg gcattagctt tgatccaaag gactggacag tagaaggcta ccaaagggta
     3841 ttttcagata agtctatcct acgcggattt tttaactccc tcttttattc cttctcattt
     3901 gcctttgtga ctgtggcgat ctcagtcatg acggcctacc cgctctctaa aaaagatttg
     3961 gttggaaaaa aatggatcaa tgccttccta gtttttacca tgttcttcgg tggtggactt
     4021 gttccgacct atcttttggt taaagatctg ggaatgctga acactgtctg ggccattatt
     4081 attcctggtg cagtcaatgt ttggaatatc atcttggcac ggacctattt ccaaggcttg
     4141 ccagatgagt tggtagaagc ggccgtaatg gatggtgcca atgaatttca gattttctgg
     4201 aaaatcatga ttccactagc taagccaatc atgtttgtac ttttcctcta tgcttttgtc
     4261 ggtcaatgga attcttactt tgatgccatg atttacatca aggatccaga cttggagcca
     4321 ctccaactag tacttcgtaa aatcctcatt caaagcgagc ctgctaagga catgattgga
     4381 gcccaggctg ccatgaatga aatgaaacgc atcgcagaaa tgattaagta tgcgaccatt
     4441 gtcatctcta gcttgccact cattgtcatg tatccattct tccagaaata ctttgacaag
     4501 ggtatcatgg ctggttcatt aaaaggttaa tcctcttcga aaatcaaaag cagacgttgt
     4561 tgacttgatt tgatgagtga aaagatccag tggatctttt cagcctgttc cttgaaatat
     4621 aaaaggaaca gagttctatc tgcatctgca tcgcctagtc tgtttttgat tttcattgag
     4681 tataataaat attaattatt ttttagaaaa caatacagga ggttgtttct gatgaaacac
     4741 aaatttggaa aaacagttgt tacgcttcta gcaagtaccg ttttgttggc tgcttgtggc
     4801 tcaaaaaata ctgcatcaag ccctgattat gaattgaaag atgttcaatt cccgcttgaa
     4861 aaatcagtta cgcttaagtt tatgacagct agctcccccc tagctccagc tgatccgaat
     4921 gataagttga ttttccaacg tcttgaggaa gaaacgggcg ttcatatcga atggaccaac
     4981 tatcagtctg actttggtga aaagcggaac ttggacattg cttcaggtga tttgccagat
     5041 gccatccata atgacggggc ttctgatgtg gaattgatga actgggcaaa acaaggggtt
     5101 atcgtaccag ttgaagactt gattgataag catatgccaa acctcaagaa aattttggat
     5161 gaaaatccag agtaccgttc catgattaca gcaccagacg gtcatatcta ctcattccca
     5221 tggattgaag agctgggtga aggcaaggaa tctatccata ctgtcagcga tattgcttgg
     5281 attaacaagg aatggttgaa caagcttggt cttgaaatgc caaaaacaac agatgacttg
     5341 atcaaggtcc ttgaagcctt caagaccaag gaccctaacg gcaacggcaa ggcggatgaa
     5401 attccaatgt cctttgtcaa cggtaacggc ggcgaagact tcaagattct ctttggtgcc
     5461 ttcggtgtcg gtgataacga tgagcatatc gtcgtaaaca atgacggtac cgttgacttt
     5521 acagcggaca acgaagacta caaagaaggt gttgagttca tgcgcaccct tcaagaaaaa
     5581 ggtctcattg acccagaagc cttcgaacat gactggaata cttacttggc taaaggtagc
     5641 gaaaacctat acggtgttta cttcacttgg gacaaggcaa atatcaccgg tatgaatgat
     5701 acttatgaca tcttgccagt tttggcagga cctgacggga ccaagcacat cacacgtacc
     5761 aacggtatgg gcttccaacg cgaccgcatg gtcattacct cagctaacaa aaacttggaa
     5821 ctaactgcta aatggattga tgcccaatac aaaccaatcc agtctgttca aaacaactgg
     5881 ggtacctatg gcgatgaaaa ccaacaaaac atctttgaac ttgacacagc aactaatagt
     5941 cttaagcacc taccattgaa cggtacagct ccaggcgaat tacgtcagaa gacagaagtt
     6001 ggaggtcctc ttgctattct tgacgaatac tacggtacag tgacaaccat gccagacgat
     6061 gctaaatggc gtttggactt gatgcacgca acctatcttg actatgtgac caacgatgac
     6121 atctaccctc gtgtcttcat ggaacaagaa gatttggata agattgccca ggttgaagca
     6181 gatatgaacg atttcatcta ccggaaacgt gcagaatgga ttgtcaacgg cggcatcgaa
     6241 gaagagtggg atagctactt gaaagaattg gaaagctatg gtctttctga ctggttagct
     6301 atcaagcaaa aatactacga tcagtataaa gaaaatcagt aatcaaaagg aggctgcctg
     6361 tgaaaacagt agtagaagcc aatcaattta ttcagacaga aaaaggaaag gtcaatccga
     6421 ttttcaaacc gcaagcccat ctgacaccag aaacaggctg gatgaacgac cccaatggat
     6481 ttatctactt ccgtggagaa taccatttgt tctaccaatt caacccttac gaaagtgttt
     6541 ggggaccgat gcactggggt catgccaaaa gtaaggactt ggtcaactgg gaacaacttc
     6601 cagttgccct agctcctgat aaagcttacg ataaggatgg ctgtttctcg ggctctgcca
     6661 ttgtcaaaga tgatgtcctc tggctcatgt ataccggtca catcgtcaat gaagacggga
     6721 cagttagtca agttcagaac atggccttct cgactgacgg tattcacttt gaaaaaatcg
     6781 atcagaatcc agtcgcaaca gcagaaggac tgccagaaga agtcattgcc aatgacttcc
     6841 gcgatccgaa gatttttgag aaagatggtc attactactc tgttgtcgca accaagcaca
     6901 aggataatgt cggttgtatc gttctcctag gttctccaaa tttgaccgac tggcaatttg
     6961 agtccatctt cttaaaaggg gaaaaccacc aaggtcacgt ttgggaatgt cctgactact
     7021 ttgaagtgga cggacaagag tacctgatta tctctcccat gcgttaccaa aaagacggga
     7081 atgactttat caatatcaat tccaacatct ttgtgacagg tcatgtggac tgggataaga
     7141 aggtctttgt ggcagattcc tttaaggaaa ttgaccacgg acatgacttc tacgcagctc
     7201 agactaccga aggtccagaa ggcgaacgtg tcatggtagc ctggatgcac acctggggtc
     7261 gcaagttggt gaccaatgac cttggccata agtggtacgg tcagatgacc cttccacgca
     7321 ttctcaagaa gactgaaaac ggattgcacc aagttctgcc aacaagtgtc ttgaacagct
     7381 ttgacgatat tgaaattgga caaagcatcc aaggtccaag caagctcact cttaaactag
     7441 atgacagttt ggagttgaaa cttggcaacg acctagatta cctgcaattt ggttacgata
     7501 aggaaagaca agaagtctat attgaccgta gtcacctcaa aatccagcaa gctggtgaag
     7561 aagagtggcc aacggttcgc cgagcagtta ctgtccaagc aacagatctg ctagtcttgg
     7621 ttgataccaa ctgtgtggaa atccttgtca acgacggtca agaaagcttg acctcaacct
     7681 tctatgtaga aggtgagcga gtaattaaat aacaatgtcc ccccctaaaa tattctttca
     7741 ctccaagaga aaccctgtat ttgcagggct ttttctgata tgaaaaatat tctcaattat
     7801 gataaaataa agagattgag aaagttgagg tatctatgag aaagacaagt aaaaaaggaa
     7861 aggctacgag gcgaccaacc aaggcagaat tagcacagca agaacgtgtt aagaatatca
     7921 cccttcgagt attggggctt ttattcattg cctttgcagc cagtcgccta ggtgtgtttg
     7981 gagtgaccag ctacaatatt ttccggctat tatttggtag tctggcctat ctattattgg
     8041 cgggtgcatt tatctacctt cttattccca aagtcttacg cgaaagagaa ggggccatat
     8101 cgggcttctg gctgattgtt atcgggttat taattgaatt tcaggcttac ttagactgga
     8161 cctatcaagg gagtgactta ttcggtcata ctctaaaatt ggccttgtca gacctagcta
     8221 agtttcaggt aacagcattt ctaggcggag ggatgattgg aagtatcttc tatctgccag
     8281 tctccttcct ctttgcaaat gtcggttcct tcttcatcgg tcttctagtg atagcatttg
     8341 gtatcttttt tgtaagccca tggtctgttt atgatgttgc cgatggcttg gcggttgcca
     8401 aagataagtt ggtggagacg caggtaaaaa gagcagagct tcgaacacag aagaaggctg
     8461 aacgagaaga aaaacgtcag caagaattag ctcgtctaga agaggaacgc cttcgtctag
     8521 aggaagagga agagtcagct cgggctttgg cactggtaga tagacatgtc gatttagaaa
     8581 cgggtgaaat cctcgaagaa gagcctgttc aagtaccgat tatttcagaa tatgaccact
     8641 tagacataga agatgaattt cctattatgt tggcagaaga tgaccaacca gcacaatcaa
     8701 actcggcaag ccaggcttct gacccaaatg agtttgaaaa ggacgagaca gatgtggaga
     8761 ttgatttcaa gcctaagcag agactagcat ataaacttcc gtccatagac ttatttgctc
     8821 ctataaaagc taagagtcag tccaatgaaa aacgaattgt tcgtcagaat attaaagttt
     8881 tagaagacac ctttgccagt tttggaatca aggtagtagt tgagcgtgct gagattggac
     8941 catcggtaac caagtatgaa gtcaaaccag cagtcggcgt ccgtgtcaat cggatttcta
     9001 acctagctga tgatttggct ctagcccttg cggctaaaga tgtccgtatt gaagctccta
     9061 tcccaggaaa atctctggtc ggtattgaag ttccaaactc tgaagtggct acagtacctt
     9121 tccgtgagct ctgggaacaa tctaaaacag acccagacaa gcttctggaa attcctctcg
     9181 gtaaggctgt caatggctcc gtccgttcct ttaacctagc acgtatgccc catctattgg
     9241 tggctggttc aactggttca gggaagtctg ttgccgtcaa cggtatcatc tcttcaattc
     9301 tcatgaaagc tggtccagac caagttaagt tcatgatgat tgaccccaaa atggtcgaat
     9361 tatcggtcta taatgatatt ccccacctat tgattcccgt tgtgaccaac ccacgcaagg
     9421 ctgctcgagc tcttcaaaaa gtagtggatg aaatggagaa acgctatgag ttgtttagcc
     9481 agattggtgt ccgaaactta gaaggttata atgcgaaggt cgaagaattt aatagccgtt
     9541 cagaagaaaa acagattcca cttcctctta ttgtggtaat cgtagacgag ttggcagact
     9601 tgatgatggt agccagcaag gaagtggaag atgccattat tcgcttggga cagaaggctc
     9661 gtgcagcagg tatccacatg attcttgcta cccagcgacc atctgttgat gttatttcag
     9721 gtttgattaa agccaatgta ccatctcgta tcgcctttgc cgtatcaagc ggtacagaca
     9781 gtcggacgat tctagatgaa aatggtgctg aaaaactctt aggccgcggt gacatgctct
     9841 ttaaaccgat tgatgagaac catccagtcc gcttgcaagg ttcctttata tccgatgatg
     9901 atgtagaagc aatagttggc tttatcaagg atcaggcaga tgcagattat gatgaatcct
     9961 ttgatccagg tgaagtggca gaaggtgatg gcgatgcagg ttttggtgat gctggaggag
    10021 atccactttt caacgaagca cgtgccttgg tagttgagac acaaaaagcc agcgcctcta
    10081 tgattcaacg acgcttgtct gtcggtttta acagggcaac acgcctcatg gaagagctag
    10141 aagcagcggg tgtcattggt ccagctgaag gaacaaaacc tagaaaggta ttggaaacac
    10201 aataatgaaa tttgatgcag ttcatcatat tgcaattatc ggtagtgact atgacaaaac
    10261 aagagaattt tatgttgaga aactaggctt tgaacaggtg gatgagcata ttcgcccaga
    10321 aaaaaatgat attctcttca atgtcaaaaa aggcaatctg atcttggaaa ttttcatcaa
    10381 accagatgcg ccaatgcgtc cggccatgcc caatcctgaa catacaggtc tacgccatct
    10441 agccttccag gttgcagatg tggaagcctg tctggaagaa tttgaccgtt tgggcattcg
    10501 acacgaagcc cttcgtacag atgattttga tggtaaaaaa atggctttct tctttgatcc
    10561 agatggcctc cctctagaaa ttcatgaatg agttgatgac atgatagggt ctaattcgat
    10621 agattttcaa acagaagcag tagttaggtg gatgtctagc tactgttatt gttttgatgt
    10681 atcaactttg attattttaa tcctagtgga atgtgtaata ttgcatgtag ttgcatcttg
    10741 aacatgttta gttgaataat cttacactca actatgacgg atagaaagaa cggaaacgaa
    10801 caacaatagg tgttgtttat tatatagttc gtctttgtct taaaatttaa gcaaa
//
LOCUS       DASGAC010000061        10850 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.061, whole genome shotgun sequence.
ACCESSION   DASGAC010000061 DASGAC010000000
VERSION     DASGAC010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10850
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.061"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(270..1814)
                     /locus_tag="U1335_001188"
     CDS             complement(270..1814)
                     /locus_tag="U1335_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000025412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM5231675.1"
                     /translation="MSILEVKNLSHGFGDRAIFENVSFRLLKGEHIGLVGANGEGKST
                     FMSIVTGQLQPDEGKVEWSRYVTAGYLDQHAKLEKGQSVRDVLRTAFDELFKTEARIN
                     DIYMSMAEEGADMDALMEEVGELQDRLESRDFYTLDTKIDEVARALGVMEYGMDKDVT
                     ELSGGQRTKVLLAKLLLEKPDILLLDEPTNYLDAEHIDWLKRYLQNYENAFILISHDI
                     PFLNDVINIVYHVENQLLTRYTGDYYQFQEVHAMKRAQLEAAYERQQKEIADLQDFVN
                     RNKARVATRNMAMSRQKKLDKMEIIELQAEKPKPSFDFKMARTPSRFIFQTTDLEIGY
                     DRVLTRKPLNLTFERNQKIAIVGANGIGKSTLLKSLLGIIPPLGGSVERGEYLELGYF
                     EQEVAGGNRQTPLEAVWDAFPALNQAEVRAALARCGLTSKHIESQIQVLSGGEQAKVR
                     FCLLMNRENNVLVLDEPTNHLDVDAKDELKRALQAYKGSILMVCHEPDFYEGWVDDVW
                     NFNELT"
     gene            complement(1960..3309)
                     /locus_tag="U1335_001189"
     CDS             complement(1960..3309)
                     /locus_tag="U1335_001189"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007517007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEM5231676.1"
                     /translation="MGKYFGTDGVRGEANVELTPELAFKLGRFGGYVLSQHETDVPRV
                     FVARDTRISGQMLEAALIAGLLSVGIHVYKLGVLATPGVAHLVKTEKASAGVMISASH
                     NPAQDNGIKFFAGDGFKLDDALEAEIEALLDAEEDTLPRPSAHGLGDVVDYPEGLRKY
                     QQFLVSTGTDLDGMKVALDTANGAAATSARQIFVDLGADLTVMAEKPDGLNINEGVGS
                     THPEKLQEQVKETGSQIGLAFDGDSDRLIAVDENGDLVDGDRIMYIVGKYLADRGLLA
                     KNTIVTTVMSNLGFHKALDREGIEKAVTAVGDRYVVEEMRKEGYNVGGEQSGHVILMD
                     YNTTGDGQLTAVQLTKIMKETGKKLSELAAEVTIYPQKLVNIRVENSMKDKVMEVPAI
                     AAIIEKMEAEMAGNGRILVRPSGTEPLLRVMAEAPTDAEVDYYVDTIADVVRAEIGI"
     gene            complement(3322..4026)
                     /locus_tag="U1335_001190"
     CDS             complement(3322..4026)
                     /locus_tag="U1335_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231677.1"
                     /translation="MNDKFKAVGHLALSIFLALLLFFYATTTNYKNSESAAQNTESET
                     YVHTLSSVPIEIEYDTNKYFISGFSSTVAVELRGSNRVLLQRESDESTRTFQVTADLR
                     ELSDGTQTVKLQLTNLPAGVSATLAPDAITVKIGKKVSKAFPVAGRVYSNQLAEGYSL
                     SKVSVDVDTVKVTTDEETMAKIDRVEAVAMDVSNLSENYSGTAKLQAVDSDGNVLPVV
                     LSQTEANMQIILTKTK"
     gene            complement(4016..4870)
                     /locus_tag="U1335_001191"
     CDS             complement(4016..4870)
                     /locus_tag="U1335_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00159 family protein"
                     /protein_id="HEM5231678.1"
                     /translation="MLNLNQLLDTGYWSSLIASPWTALLHLIDISIVVYLIYNFSKSI
                     AGTKIMTLIRGVFLFIIVQIIASLFGLQTIAWLINQVITYGVIAAVVIFAPELRAMLE
                     KLGRTTQIFGTNTVSAEEKLIVAFLKSVAYMSPRKIGALVAVEQAQTLQEYRATGIPL
                     NADISQELLINIFIPNTPLHDGAVIVKEDKVAVACAYLPLSESAGISKEFGTRHRAAI
                     GLSEVSDAFVFIVSEETGSISIARNGIFKHDLTLAEFEAELRATFISENVEKKSIWKR
                     LGGGKHER"
     gene            5050..6393
                     /locus_tag="U1335_001192"
     CDS             5050..6393
                     /locus_tag="U1335_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HEM5231679.1"
                     /translation="MKINTALGILAGKSSQFILKKLGRGTTLPGKIALKFDKHILDSL
                     AKDYEVVVITGTNGKTLTTALTVGILQEAFGEITTNTSGANMITGITATFLSTKKNKN
                     GKKIAVLEIDEASLARVTDFIKPSLIVFTNIFRDQMDRYGEIYTTYHMILDGAAKVPE
                     ATILANGDSPLFNSTNVINPVKYYGFATEEHEPRLAHYNTEGVLCPHCHQIIQYKLNT
                     YANLGSYICNNCGFCRPELDYRLTDLKEITNTSSTFAIDGQDYKINIGGLYNIYNALA
                     AVSVAAFLGVSPEKIKAGFDKSKAVFGRQETFKLGDKDCTLVLIKNPVGATQAIEMIK
                     LAPYDFSLSVLLNANYADGIDTSWIWDADFEQITQMDIPQVFAGGVRSSEIARRLRVT
                     GYPEDRITETPKLEDIVTLIEQSNSQQAYILATYTAMLEFRDLLAQRQAVGKEMK"
     gene            6393..7181
                     /locus_tag="U1335_001193"
     CDS             6393..7181
                     /locus_tag="U1335_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HEM5231680.1"
                     /translation="MVYTSLKSPEKDYTYDLHIAHLYGDLMNTYGDNGNILMLKYVAE
                     KLGARVQVDIVSLTDDFDKDYYDIAFFGGGQDYEQSILAKDLPIKKDSLADFIENDGV
                     MLAICGGFQLLGQYYIEAGGRKIDGLGIMGHYTLNQTNNRYIGDIKIHNEEFNETYYG
                     FENHQGRTFLADNQKPLGKVVYGNGNNKEDGGEGLHYKNTFGSYFHGPILSRNANLAY
                     RLVTTALRKKYGQNIQLASYADILSKEVAEEYGDVKSKAEFDTQ"
     gene            complement(7428..8255)
                     /locus_tag="U1335_001194"
     CDS             complement(7428..8255)
                     /locus_tag="U1335_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEM5231681.1"
                     /translation="MTKHQRFANSDQFFACPHCGQSLGLDLNSLRCPNRHTFDIAKQG
                     YVNLAPQVKQSANYHKSSFENRQAFLEAGYYDYLYAALEEKIAELGLRSVLDIGCGEG
                     FYSRKLAEKMDLDILAFDISKDSILLAARTDRTKSVKWFVGDLTKLPIQDKTIDGILD
                     IFSPANYQEFARVLKTGGAILKLVPGPNHLKELRHLAKDQLRKESYDNQEIVDHFKSY
                     VGQVEQVLVSRTLPITAAHAQVLADMTPLFFQVDQSKLDLSQLTEITVEGVLLVGTI"
     gene            complement(8257..8733)
                     /locus_tag="U1335_001195"
     CDS             complement(8257..8733)
                     /locus_tag="U1335_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3955 domain-containing protein"
                     /protein_id="HEM5231682.1"
                     /translation="MNFGQQIKDLRKKEGLTQEQFALKLNVTRQAVSNWENDKNLPDL
                     ELLILMSSVFSISLDQLILGGTDMNNMTEKLVKDGREGRRTQMHLTITIIGSFLMVLG
                     LVCFLIKANSVEYIDAEGILHENFYLIPVGYLLVFTGAIATLLSGLALHRFRKENK"
     gene            complement(8920..10818)
                     /locus_tag="U1335_001196"
     CDS             complement(8920..10818)
                     /locus_tag="U1335_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM5231683.1"
                     /translation="MIILSGNKIERSFAGEVLFNNINIQVDERDRIALVGKNGAGKST
                     LLKILVGEEAATSGEISTKRDLSLSYLAQDSRFESENTIYDEMLHVFDDLRMTEKRLR
                     SMEEQMGSLSGNELDQLMKTYDSLSEEFRLAGGFSYEADIRAILNGFKFDQTMWDMKI
                     SELSGGQNTRLALAKMLLESPELLVLDEPTNHLDIETIAWLENYLVHYKGALIIVSHD
                     RYFLDKVATLTLDLTKHSLDRYVGNYSQFVELKEQKLQTELQNYEKQQKEIAKLEDFV
                     QKNIVRASTTKRAQARRKQLEKMERLDKPTIGQKSANMTFQSDKTSGNIVLTVENAAV
                     GYDGEILSQPISIDQRKLDAIAIVGPNGIGKTTLLKSIIGALPFIKGEAKLGANVEVG
                     YYDQTQSALTPSNTVLEELWSAFPTTPEVEIRNRLGAFLFSGDDVKKSVSMLSGGEKA
                     RLLLAKLSMENNNFLILDEPTNHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVAT
                     KVLEISETGSTLYLGDYDYYLEKKAEQETESQPDQLESTSQSAGAMDYQAQKENQKEQ
                     RKLARRIEQIEAEIETIENHLSELNQAMLETNDISQLTDYQKEIDQLTSQQESLMEEW
                     EELSEQMG"
BASE COUNT         2939 a         2642 c         2246 g         3023 t
ORIGIN      
        1 gacaaactca cttccttcca attggaaacc tacattgcca agcacctatc tattattcga
       61 cccaatcgaa cgttccaaag aaagataaaa agcaaggcac ctgtaagctt cacttataga
      121 gtaacataat agctgaaaaa ttgggttaaa aaacctcctt tttgtgcgcc ctaaatacaa
      181 aaactgttcc cgtttggtca tcaattgctc ggacgggaat agttttaaat gcttaactta
      241 atgacattgc ctttcccact acctgtttct taagtcaatt cattaaaatt ccatacatcg
      301 tccacccagc cttcatagaa atcaggctcg tggcagacca tgaggataga tcctttgtag
      361 gcttgaaggg cacgtttgag ttcatccttg gcatccacat ccaagtggtt ggtcggctcg
      421 tcgagaacca agacattgtt ttcacggttc ataagcaaac agaaacgaac ttttgcctgt
      481 tcaccaccgg aaaggacttg gatctggctt tcgatatgtt tggaagtcag accgcaacga
      541 gccaaggcag ctcgtacttc tgcctggtta agggctggaa aggcatccca aacggcttca
      601 agcggagtct gacgattgcc accagctact tcttgctcga aatagcctag ttccaaatac
      661 tccccacgct ccacagaacc acccagcggt ggaataatcc ccagcaaact tttaagaaga
      721 gtggatttcc cgataccgtt ggcaccgaca atggcaatct tctggttgcg ttcaaaggtc
      781 agattgagcg gcttacgtgt caatacacgg tcataaccaa tttccaaatc agtcgtttgg
      841 aagataaagc gacttggagt tcgagccatt ttgaaatcaa atgatggctt tggtttctct
      901 gcttgaagct caataatctc catcttatcc agcttcttct gacgagacat ggccatgttt
      961 cgagttgcaa cacgagcctt attacggtta acgaagtcct gcaagtctgc gatttccttc
     1021 tgctggcgct cataggctgc ctctaactga gcccgcttca tggcatggac ttcttggaat
     1081 tgataataat cacctgtgta acgggtcaag agttgatttt ccacatggta gacaatatta
     1141 atcacatcat tcaagaaagg aatgtcatgc gaaatcaaga taaaggcatt ttcatagttc
     1201 tgcaagtagc gtttgagcca gtcgatgtgt tcagcatcca agtagttggt cggctcatcc
     1261 agaagcaaga tgtcaggctt ttccaagagc aattttgcca aaagaacttt agtccgttgt
     1321 ccccctgata actccgtcac atccttgtcc atgccatatt ccatgacacc aagcgcacgc
     1381 gccacttcgt caatcttggt atcaagcgta tagaaatcac ggctttccag acggtcttgt
     1441 agttcgccaa cctcttccat gagggcatcc atatcggcac cctcttctgc catagacatg
     1501 taaatatcat taatgcgggc ttctgtcttg aaaagttcat cgaatgctgt ccgcaagaca
     1561 tcacggactg attgaccctt ttctagttta gcatgctggt ccaaataacc tgccgttaca
     1621 taacgtgacc attcaacctt accttcatct ggctgcaatt gacctgtcac gatagacatg
     1681 aaggtcgatt tcccttctcc attggcaccg acaagaccaa tatgctcccc tttcaagaga
     1741 cggaaggaga cattctcaaa aatcgcacgg tcaccaaaac catgacttaa attctttact
     1801 tctaaaatac tcataatttc ctcacaacat caaagaactg gagtaaccaa actccagttt
     1861 ttacatttat tttcgcagtc ttgagtggaa ctactagcca cctaatcaat ctggtggttc
     1921 gagacaatga aatcatctta acaaatgatt gatttctgct taaattccga tttccgcacg
     1981 gaccacatcg gcaatggtgt ccacgtagta atcgacttca gcatccgttg gcgcttctgc
     2041 catgacacgc aagaggggct cagtaccact tgggcgaacc aagatacgac cgttgccagc
     2101 catttctgct tccatttttt caatgatagc tgcgattgct ggcacttcca tgaccttgtc
     2161 tttcatacta ttttccacac ggatattgac caatttttgc gggtaaatgg tgacttctgc
     2221 tgccaactct gacaacttct tacctgtttc tttcatgatt ttggtcaatt gcacagcggt
     2281 caactggccg tcacctgtgg tgttataatc catcagaatc acatgtcctg actgctcacc
     2341 accgacattg tagccttcct tgcgcatttc ttcaaccaca taacggtcac caactgcggt
     2401 cacagctttt tcaatacctt cacgatccaa agccttatgg aatccaagat tagacataac
     2461 tgtggtcaca attgtatttt tggccaatag acctcgatca gcgaggtatt taccaacgat
     2521 gtacatgata cggtcaccgt ctactaaatc accattttca tcgacagcaa tcaagcggtc
     2581 actgtcacca tcaaaggcaa gaccgatttg actacctgtt tccttgacct gttcttgcaa
     2641 tttttcagga tgagttgaac caacgccctc attgatattt aaaccgtctg gcttttcagc
     2701 cattactgtc aaatctgctc ccaaatctac aaaaatttga cgtgcagatg ttgctgcggc
     2761 accattggct gtatcgagtg caactttcat accgtccaaa tctgtaccag ttgacaccaa
     2821 gaattgctgg tacttacgta gaccttctgg ataatctacc acatcaccca aaccatgtgc
     2881 agatggacga ggaagtgtat cttcttcagc atccaagaga gcttcaatct ctgcttccaa
     2941 agcatcatcc aacttgaagc cgtcacctgc aaagaatttg ataccgttat cttgcgctgg
     3001 gttatgactt gcagaaatca tgacacctgc acttgctttt tcagttttga ctaggtgggc
     3061 aacacccggt gtcgccaaaa ctcccaattt atacacatga atccctactg atagaagtcc
     3121 tgcaatcaag gcagcctcta acatttgacc tgagatacgt gtgtcacgcg ccacaaagac
     3181 acgaggaaca tccgtctcat gctggctaag gacataacca ccaaaacgac ccaatttgaa
     3241 tgctaattct ggcgttaatt ctacgtttgc ttctccacgg acaccatctg tcccaaaata
     3301 tttacccatt ttcataacct cttattttgt ttttgtaagt ataatttgca tatttgcttc
     3361 cgtctgagac agtacaactg gcaagacatt gccgtcgcta tctacagcct gtaatttagc
     3421 tgtaccacta taattctcag acagattgct cacatccatc gcaacagctt cgacccgatc
     3481 aatcttagcc attgtttctt catccgttgt tactttaacg gtatctacgt cgaccgaaac
     3541 cttagacaga ctgtaacctt ctgccaattg attactatat actctaccag ctactgggaa
     3601 tgccttgcta acttttttac caatcttaac ggtaatcgca tctggtgcta gtgtcgcact
     3661 cactcctgcc ggcaaattgg tcaattgtag cttgacagtc tgtgtcccat cactcaactc
     3721 tctcaaatcc gcagtcactt gaaacgtccg agttgactca tcggattctc tctgtaggag
     3781 aacacgatta gagcccctta attcaactgc taccgtcgaa gaaaatccgg aaataaaata
     3841 cttgtttgta tcatattcaa tctcaatcgg tacactactc agtgtgtgaa cataggtttc
     3901 tgactccgtg ttctgtgcag ctgattctga atttttatag ttggtggttg ttgcatagaa
     3961 aaagagcaac aatgctagaa aaatagataa ggctaagtga cctacagctt taaacttatc
     4021 gttcatgttt gccacctcct aatcgcttcc agatggactt cttctctaca ttttcagaaa
     4081 taaaagttgc tcgcaactct gcttcaaact cagccaaagt caaatcatgt ttaaatatcc
     4141 cgtttcgtgc aatagagata ctgccagttt cttcagaaac aataaataca aacgcatcag
     4201 atacctccga taagccaatg gctgcacgat gtcgtgttcc aaattccttt gaaattcctg
     4261 cgctctctga caggggcaaa taagcacaag caacagccac cttgtcttcc ttgacaatta
     4321 cagccccatc atgtaacggt gtattcggga tgaaaatatt tattaacaat tcctgcgata
     4381 tatccgcatt gagtggaatc cctgttgctc tatattcttg caatgtttgg gcttgttcta
     4441 ctgccacaag tgcaccaatt ttacgcggag acatataagc aaccgatttg agaaaagcaa
     4501 caattaactt ttcttctgca ctcactgtat ttgtcccaaa aatctgagtt gtcctaccga
     4561 gtttttcaag catagcacgc aactctggtg caaaaataac tactgctgca ataaccccat
     4621 acgtgattac ttgattaatc agccaagcaa tcgtctgcag accgaataaa ctcgctataa
     4681 tctggacaat aatgaagaga aaaacccctc gaatcaatgt cataatttta gtacctgcaa
     4741 tagacttact aaaattataa atcaaataaa caactatact aatatcaatt aggtgcaaca
     4801 atgcggtcca aggactggct atcaaactcg accaataccc tgtatccagt aactggttta
     4861 ggtttaacat atcattctca tactttctaa ctcatacata gtaatgtacc cattatacca
     4921 tattttcccc ttttctttag aaaatagtga ccttcctgtt aaaaatagta cagatttact
     4981 gcaggaatat atcacgttcc aacacactcc attctagaaa atccccagtc tttatgataa
     5041 aataatccca tgaaaataaa tacagctttg ggtattctag caggaaaaag ctcccagttt
     5101 attctgaaaa aacttggacg tggtactacc ctacctggaa aaattgccct caaattcgat
     5161 aaacatattt tagatagttt ggctaaggac tatgaagttg tcgtcattac cggaacaaat
     5221 ggcaagacgt tgacaaccgc attaacagtt ggaattctcc aggaagcatt tggagaaatc
     5281 acaaccaaca caagtggtgc caatatgatt accgggatta cagccacttt tttgtcaact
     5341 aagaaaaata agaatggtaa aaaaatagct gtcttggaaa ttgacgaagc aagccttgcc
     5401 cgcgtgaccg actttatcaa gcctagcctg attgtcttta ccaacatctt ccgcgaccag
     5461 atggatcgtt atggcgagat ttataccacc taccatatga ttttagacgg ggctgccaag
     5521 gtaccagagg cgaccattct cgccaacggt gacagcccac ttttcaactc gacaaacgtt
     5581 atcaatccag taaaatacta cggttttgca acggaagagc atgagcctcg cctggcccat
     5641 tacaatacag aaggcgttct ctgccctcat tgccaccaga ttatccagta caagctcaat
     5701 acctacgcta acttgggcag ctacatctgt aacaactgtg gcttttgccg accagagctg
     5761 gactataggt tgacagactt gaaagaaatc accaatactt cttctacctt tgccattgac
     5821 ggtcaagatt ataagattaa catcggtggg ctttacaata tctacaatgc cctagcagct
     5881 gtcagcgtag cagcatttct cggcgtatct cctgagaaaa tcaaggcagg atttgacaaa
     5941 tccaaggcag tcttcggtcg ccaagaaacc tttaaactcg gtgacaagga ctgtaccttg
     6001 gtcctcatta aaaacccagt tggtgcgacc caggccattg aaatgataaa actggctcca
     6061 tacgatttta gcctgtccgt ccttctcaat gccaactacg ctgacggaat tgataccagc
     6121 tggatttggg acgctgactt tgaacaaatc actcaaatgg acattccaca agtctttgca
     6181 ggcggtgttc gttcgtctga aatcgcccgt cgtctccgtg tgactggcta tccagaggac
     6241 cggattactg aaacgccgaa actggaagac atcgtgacct tgattgagca gtccaacagt
     6301 cagcaggcct atatcctcgc gacctataca gctatgctcg aattccgcga cctgctggct
     6361 caacgccaag ccgttggaaa ggagatgaaa taatggtcta tacgtcatta aaaagtcctg
     6421 aaaaagacta cacttacgat ctccacatcg cccacctcta cggtgatttg atgaacacct
     6481 acggtgacaa tggcaatatc ctcatgctca agtatgtagc tgaaaagctg ggggctcgtg
     6541 ttcaggtgga catcgtttcg ctgactgatg attttgataa ggattactat gacatcgcct
     6601 ttttcggtgg tggtcaagac tatgagcagt ctattttagc caaggattta ccgataaaaa
     6661 aagacagtct agcagacttt atcgaaaacg atggcgtcat gctggctatc tgcggtggct
     6721 tccaattgct cggtcaatat tatattgaag ctggcggtcg caagattgac gggctgggaa
     6781 tcatgggcca ctacaccctc aaccagacca ataaccgcta tatcggtgac atcaaaattc
     6841 acaatgagga gttcaacgaa acctactacg gttttgaaaa ccaccaaggc cgcaccttcc
     6901 tagctgacaa ccaaaagccg ctgggcaagg tcgtttatgg caatggcaac aacaaggaag
     6961 atggcggcga aggcctgcac tataaaaaca ccttcggcag ctacttccac ggaccaatcc
     7021 tgtctcgcaa tgccaaccta gcctaccgcc tggtcacaac tgccctccgt aaaaaatatg
     7081 gacaaaacat ccaacttgct agctacgctg acatcctcag taaagaagtc gctgaagaat
     7141 acggcgatgt aaaaagcaag gcagaatttg atactcaatg aaaatcagaa tcagactagc
     7201 accaaaggtt tggggaacct ttggtggttg gaaatagagc gaacatcgtt cgtgtctata
     7261 tggcgcagat agaactctgt cactttatta ttgtcaagtg acaggctgga aacctccgct
     7321 ggagctttcc actcatcaaa tcaagtcaac aacgtctgac tttgattttc gaagagtatg
     7381 agaaataaag caaaaccgct tctggcatcc agaggcggtt tcatttttta tatcgttcct
     7441 accaaaagca ctccctcaac cgtaatctcc gtcaactggc tcaaatccaa cttagactgg
     7501 tccacttgga aaaagagagg tgtcatgtct gccaagactt gagcatgggc ggctgtaatc
     7561 ggcagggttc ggctaaccag cacctgctcc acctgcccca cgtaagactt gaaatggtcc
     7621 acgatttctt ggttgtcata ggactccttg cggagttggt ctttggctaa atggcggagc
     7681 tccttgaggt gatttggacc tgggactaat tttagaattg ccccaccagt ttttaacact
     7741 ctggcaaact cctgataatt ggctggggaa aagatgtcca agataccgtc aatcgtctta
     7801 tcttgaatag gcaacttggt caagtcaccg acaaaccatt tgaccgactt ggtcctgtct
     7861 gttctggctg ctagaaggat agaatccttg gaaatatcaa aagcaagaat gtccaagtcc
     7921 attttctcgg ctaatttgcg ggaataaaag ccctctccac agccgatgtc caagacagac
     7981 cgcaatccca gctctgctat tttttcctcc aaagccgcat agagataatc gtaatagccc
     8041 gcctctaaaa aggcctgacg gttttcaaag ctagacttgt ggtagttggc ggactgcttg
     8101 acctggggtg ccagattgac gtagccctgc ttggcgatgt cgaaggtgtg gcggttggga
     8161 cagcggaggc tgttgaggtc aagaccaagg gactgcccac aatgtggaca ggcgaaaaat
     8221 tggtcgctat tggcaaaacg ttggtgtttg gtcatcttac ttattttctt ttctaaagcg
     8281 gtgcagggct agtcctgata ggagcgtggc aatggctcct gtaaagacta gcaagtagcc
     8341 gactggaatg agataaaaat tttcatgcag aatgccctcg gcatcaatat actcgaccga
     8401 gttggccttg atgagaaagc atacaaggcc taaaaccatg agaaagctcc ctataatggt
     8461 aatggtaagg tgcatctggg tgcggcggcc ttcacgaccg tcttttacaa gtttttctgt
     8521 catgttgttc atgtcagttc ctcctaagat aagttgatct aaggagatcg aaaagacaga
     8581 ggacatgaga atcaagagtt ccaagtcggg caggttttta tcattttccc agttggatac
     8641 ggcctgcctg gtcacattga gtttgagtgc aaactgttct tgggtcaagc cttccttttt
     8701 tcgtaagtcc ttgatttgct gtccaaagtt catttcttct cctttcggga tcctgtctgg
     8761 caggtcctaa actcatctta gcttgtcggt caatgtttgc caagaaagac tggcttgctc
     8821 tggacttttt tagcgaaagg tggtcttgct aactccgcaa gactggcttg caaacctgtt
     8881 ctatcaagtg tttgaggctc ttgtcaactt gctgtcaacc taccccatct gttccgataa
     8941 ttcttcccat tcttccataa ggctttcttg ctggctggtc agttggtcaa tttctttctg
     9001 gtaatcggtt agctgactga tgtcgttggt ttctagcatg gcttggttga gctcgctgag
     9061 atggttttcg atggtctcaa tttctgcctc gatttgctca atgcggcggg ctagtttgcg
     9121 ttgctctttt tggttttcct tttgtgcttg gtagtccata gctccggctg attggctggt
     9181 actttctagc tggtcaggct gggattctgt ttcctgctct gcctttttct ccaaataata
     9241 atcatagtcg cccaagtaga gcgtggaacc cgtttccgag atttcgagca ccttggtggc
     9301 gacgcgattg atgaaatagc ggtcgtggct gacaaagagc agggtgccgt caaagtcgat
     9361 gagggcattt tccaggactt ccttgctgtc gatgtccaag tggttggtcg gctcgtcgag
     9421 gatgaggaag ttgttatttt ccatagatag cttagccagg agcaggcggg ctttttcccc
     9481 accggacaac atagagacgg actttttgac atcatctcct gagaagagaa aggctcccag
     9541 gcggttgcgg atttccactt caggcgtggt tggaaaggcg gaccagagct cctccaagac
     9601 ggtgttggaa ggcgtcaggg ccgactgggt ctggtcgtag tagcctactt ccacattggc
     9661 acctagcttg gcttcccctt tgataaatgg cagagctccg atgatggatt tgagcagggt
     9721 tgtttttccg ataccattgg ggccgactat ggcaatggca tctagcttgc gttggtcaat
     9781 ggaaatcggt tgagaaagta tttccccatc gtagcccacc gcagcatttt ccactgtcaa
     9841 gacgatattt ccagaagtct tatctgactg aaaggtcatg ttggcagact tctgaccaat
     9901 tgtcggcttg tccagtcgct ccatcttttc caactgcttg cgtctagcct gagcacgctt
     9961 ggtggtcgaa gcacggacga tatttttctg gacaaagtct tctaacttgg cgatttcctt
    10021 ctgctgcttt tcatagtttt gcagttccgt ctgtaacttc tgctctttga gctcgacaaa
    10081 ctgagaataa ttgcccacat agcgatccaa ggaatgcttg gtcaaatcca gtgtcagtgt
    10141 cgccaccttg tccaagaaat agcggtcatg gctgacgata atcaaggctc ccttgtaatg
    10201 cactaggtag ttttctaacc aagcaatcgt ctcgatgtcc aggtggttgg tcggctcatc
    10261 caggaccaat aactctgggc tttcaagcag catttttgcc agagcaagtc gagtattctg
    10321 accacctgag agttcggaga tcttcatgtc ccacatggtc tggtcaaact tgaaaccgtt
    10381 caaaatggca cgaatatccg cctcatagct aaaaccacct gccagacgaa attcctccga
    10441 cagactatca taggtcttca tgagctgatc gagttcatta ccagaaagac tgcccatttg
    10501 ctcttccata gaccgcaggc gtttctccgt catccgcagg tcgtcaaaga catgaagcat
    10561 ttcatcgtag atagtatttt ctgactcaaa acggctgtcc tgtgccaggt aagaaaggga
    10621 caaatcacgc ttggttgaaa tctctccgct tgtcgctgct tcttctccga caaggatttt
    10681 gagcagagta gacttacctg ctccattttt tccgacaaga gcaatccgat cccgctcgtc
    10741 gacttgaatg ttgatattgt taaataaaac ttcgcccgca aaagagcgtt caatcttgtt
    10801 tccacttaga ataatcataa aaatattgta ccataaatta gccgaaccgt
//
LOCUS       DASGAC010000062        10728 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.062, whole genome shotgun sequence.
ACCESSION   DASGAC010000062 DASGAC010000000
VERSION     DASGAC010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10728)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10728)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10728
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.062"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            41..1633
                     /locus_tag="U1335_001197"
     CDS             41..1633
                     /locus_tag="U1335_001197"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012235.1,HMM:NF012869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231684.1"
                     /translation="MKNLITLISKFKLLFLGCLLCSFLFAFDGILSPYVMGELSIRME
                     QGNLASVVSLIVFWGLGLVALLLAQLAYNFLKGKFLQKTSVFLRTAILQSSFQKSQLD
                     VASTSFLTKSLSDVSVIQEKVITASIQLCYCLAQGVLAFTFVLSQNWKLGLVFIGFGI
                     LPTLVPKITAKWIKNGTTTWQVNNQAYALSLEESLSSRWLLVRFKAIGNILSKNGELL
                     ATMESSYFSMNFRQAVSSFFVSLLYNLSILVGFLYGVYLISTGELVFGVLLSVYMASD
                     RVVTPLISAVYYVNEIIGALPLLEVITLNNQAYSMSDEKALPTKKMKQEEIETKDLAI
                     GYDSTVLLKGLNLFIQQGEKVLVTGGSGTGKSTLFKTLLGEIPALDGTVRIGQEPEEE
                     RIYDHIAVIDQNSFVFTDTLRFNLTLGFPIEDRHLLEVLEQVGLEKFANLEMLNARLG
                     KEDIQLSNGEQRRLEVARAILQRKGILFVDEALSGLDVVNAELLSTILLNYPGTVLNI
                     EHHIPEQKKAFYTQVIDLNDYC"
     gene            complement(1786..2829)
                     /locus_tag="U1335_001198"
     CDS             complement(1786..2829)
                     /locus_tag="U1335_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEM5231685.1"
                     /translation="MKAAIYEKAGKMTVAEVEKPSLQAKDDVIIKVVRACVCGSDLWG
                     YGEDIHHDHGDTNSGHEAIGIVEEVGEDITTLVPGDFVIVPFTHGCGHCDACRAGFDG
                     TCDNHPGYTNWGNNYQSQYIRFHYGNWALVKIPGQPSDYSEGMIKSLLTLADVMPTGY
                     HAARVAEVKPGDKVVVIGDGAVGQCAVIAAKMRGASQIIMMSRHADRQQMALESGATA
                     IVAERGEEGIAKVREILGGGADAALECVGTEASIDQALGVLHNGGRIGFVGVPHYNNH
                     ALGSTFAQNIIIGGGSASVTTYDKEILLDAVLKGDINPGRVFTQTYSLDNIDQAYKDM
                     ANRKTIKAMITVD"
     gene            2983..3843
                     /gene="tehB"
                     /locus_tag="U1335_001199"
     CDS             2983..3843
                     /gene="tehB"
                     /locus_tag="U1335_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase TehB"
                     /protein_id="HEM5231686.1"
                     /translation="MTVLVPYKRMPIWNQETVPQHFLTKHNTKVGTWAKIKVLRGQLK
                     FEPISDDNEILGEYVYGPTDDVPFVEPQAWHRVTLLTEDTEFFLEFFCQPEDYFAKKY
                     DYTRTHSEVLEALKRIEPCKVLDLGCGHGRNSLYLAQQGFEVTAVDKDVPSIRTLLQV
                     KEVEDLDLQAGTYDINSASLEQDYDWIISTVVFMFLERDRVPAIIRNMQEQTRPGGYN
                     LIVAAMDTEDAPCPMNFSFTFGAGELKEYYRDWELVKYNEDFGQLHKRDENGNFLKMR
                     FATMLARKNV"
     gene            3932..5812
                     /locus_tag="U1335_001200"
     CDS             3932..5812
                     /locus_tag="U1335_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C69 family dipeptidase"
                     /protein_id="HEM5231687.1"
                     /translation="MKKTFVRIATFLMLVCLFPAQLVQACSGFIIGKGLTTDGSILYG
                     RTEDYPYPPDNGAHNKNYIVVPAASYAEGDMLVDETFGFTAPHLANEFKYTSTPDAAR
                     GDGSNGNYGAHGFNEKGVSMTATVTAIPNAKVLAVDPLVEAGGLGEPILIDYVLPRVT
                     SAREGVELIAKTIDEKGSAEGNIVIIADKNEVWYMEILSGHQYVAIKFPEDKYAIFAN
                     TYYLGHVDFTDTENVIASAKVEEVAKQADNYVTVDGQFHIAKSYGPATYAEADRSRVY
                     AGIKLMDPASPVTYEDAVYDLLRQPTDPSRRFSLQDTFALQRNRFEHLPEFRPDDEAG
                     KVKQGDNGANDQAADATYKYALGNENVIDAHVYQINSSLPSAFGGTVWLGLAQTRNTP
                     YVPFYGIVTDTYEAFKNRSASYDTNSWYWTVQNIDKMAISHPELFGTSIQEKWIALEN
                     DWIAAQAALDAQYAGLSEDAAVALAPTVTEETLARSAEIFAQLKAVEAEMIAKIEAAT
                     TPSSSSTDSSSSTEPSTSTEPSSSSTEPSTSTEPSSSGTETSTSTSQSTSASDTGGAT
                     DTSSSSGTVVSSDKKVTPTNKKGKSSLPSTGEQVSLLLVALGVAGILTAIFLHRKKSS
                     KE"
     gene            5933..8389
                     /locus_tag="U1335_001201"
     CDS             5933..8389
                     /locus_tag="U1335_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HEM5231688.1"
                     /translation="MKQASYPIQGMTCASCAMTVEKAVGKLAGMEEASVNLATEKLSV
                     RYDEKLLGLEDIRQAVEKVGYQLVDNLVTESYDIAGMTCASCAMTVEKALGKLEGVEE
                     VSVNLATEKATIRYSRDRQNPASLERAVEQAGYQLIRPEEVEEAADKGPSKEEKLWHR
                     FVWSAAFTLPLLYIAMGPMVPFGGLPLPALLHQPLVYAISQVILLIPILYIGRSFFQK
                     GFKTLLQGHPNMDSLIAVGTGAALVQGLLMIAFLLMEKEVAMHGHHPELYFESAAVIL
                     TLITLGKYFEARSKGQTSEAIKKLMDLAPKTAQVLRDGQEIQVPIEEVVVCDQVIVRP
                     GQQIPVDGQVLEGQTRVDESMLTGESLPVKKALGDNVFGGTLNQQGAITMQATKVGRD
                     TTLAQIIRLVEEAQGSKAPISKLADQVSAVFVPVVMGLALLSGLAWYFLGQESWIFSL
                     SIIIAVLVIACPCALGLATPTAIMVGTGKGAENGLLFKSGQAIETLQGVNTIVFDKTG
                     TITEGKPQVTDIHLLSTKNREQVLQLAASSEQFSEHPLAQALLQAAQTEKIDLLPATD
                     FQALSGRGLSVTIAEQTIYLGNERLIREQGIDVSKGCAVAETFAHQAKTPVFLASQQE
                     LLAVIAIADKVKGTSRQAVQALQTMGLEVVMLTGDNEKTAKAIAKDVGIEQVVSQVLP
                     DDKANQVKHLQEQGKTVAMVGDGINDAPALAQAHVGLAIGSGTDIAIESADIVLMHSD
                     ILDVVKAVKLSQATMRTIKQNLFWAFAYNVIGIPIAMGLLHVFGGPLLNPMFAGAAMA
                     LSSVSVVLNALRLKRVKIDN"
     gene            complement(8466..9032)
                     /locus_tag="U1335_001202"
     CDS             complement(8466..9032)
                     /locus_tag="U1335_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018378447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar O-acetyltransferase"
                     /protein_id="HEM5231689.1"
                     /translation="MIEAVFKEFIDRDRLVPEKAGLRQLISDIQRENQPLVQELNTSI
                     QTVDSTRKLVEQLTLEKIDESVIINTPFQTDFGRHIHFGKDIYINKDVFMVDLGGIFI
                     EDKVLIGPRAKLISVNHPLKAEDRHKLELKSVRIQENAWIGADATILPGVTIGKNAVV
                     AAGAIVTKDVPDNTLVAGAPAKIIKTLP"
     gene            9159..10040
                     /locus_tag="U1335_001203"
     CDS             9159..10040
                     /locus_tag="U1335_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM5231690.1"
                     /translation="MDIRVLTYFIAIVQTGSISNAAQSLHITQPTLSRQIKELEQELD
                     TILFYRGSREIQLTEAGQYLYNRALEITSLVKKTEDTLRPTETISGDLYIGAAESQSL
                     DCIAKAIAILTNQYPNIKVHIQSGNADHILEQLQDGIQDVGITFGRYSTKKFDSLPLL
                     NRDSWGILVPRFHPLASKEELVLSDVLAYPLIVSSQSNVDKSIFAGLGDYRIVATYNL
                     LYNASLLVKAGVGIALCLDGIVETSYDGSGLVFRPLDLSTDSLQLLWKKGVVLSPIAK
                     RFIEILEEDLENANFDR"
     gene            10124..10609
                     /gene="tpx"
                     /locus_tag="U1335_001204"
     CDS             10124..10609
                     /gene="tpx"
                     /locus_tag="U1335_001204"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HEM5231691.1"
                     /translation="MTTFIGKPVTLVGPQLRVGDTAPDFVLMANDLSLKSLKDFGKQT
                     KVISVVPSIDTGICDTQTRRFNQELADRDNTVVITVSADLPFAQKRWCGAAGLEDAIT
                     LSDYYDHAFGKSYGVLMREWNLLARAVFVLNADNEITYVEYLDNVNEHPDYDAALEAV
                     K"
BASE COUNT         2991 a         2145 c         2494 g         3098 t
ORIGIN      
        1 tgatatggaa aaaacgtttg attgacaaat aggaggctct atgaaaaatc tcattactct
       61 gatttctaag ttcaagttat tatttttagg ctgtctactg tgctcatttc tttttgcttt
      121 tgatggcatc ttgtctccct atgtgatggg agaattgtcc attagaatgg agcaaggaaa
      181 tcttgcctca gtagtatctt tgattgtttt ttggggcttg ggtcttgttg ctttattgtt
      241 agcccagcta gcctataatt ttttgaaagg aaaattttta caaaaaacga gtgtcttttt
      301 gagaacggca atcttacaat cctcctttca aaaaagtcaa ttagatgttg cctcaacaag
      361 ttttttaaca aaatccttat ccgatgtatc ggtcatacaa gaaaaagtca taactgccag
      421 tattcaactc tgttactgcc ttgctcaagg tgtccttgca tttacttttg ttctgtcaca
      481 gaattggaaa ctaggcttgg tatttattgg ttttggtatc ttgccgacac tggtacctaa
      541 gataacagca aaatggatta agaatggtac cacgacttgg caagtcaata atcaagccta
      601 tgcactatct ctggaagaga gtttatcatc gcgttggcta ctggtacgct ttaaagcgat
      661 tggaaatatt ctttccaaaa atggagaact cttagccact atggagagta gctactttag
      721 tatgaatttt aggcaggcag tttcttcatt ctttgtaagc ctgctctata atctctcgat
      781 acttgttggt tttttatatg gagtttattt gattagtaca ggagaacttg tctttggtgt
      841 cttactttcg gtttatatgg cttctgaccg agttgtaacc ccgctgattt cagctgtcta
      901 ttatgtcaac gaaataatag gagctttgcc cttactagaa gtgattacat tgaataacca
      961 agcttatagc atgagtgatg aaaaagctct accaactaaa aagatgaagc aagaggagat
     1021 tgagacaaaa gacctagcaa ttggttatga ttctactgtc ttgttaaaag gtctcaattt
     1081 gttcatacaa caaggggaga aggtgctagt aacaggtggc tcaggaactg ggaaatcaac
     1141 cttattcaaa accttgctag gagagattcc tgctttagac ggtacagttc ggattggtca
     1201 agaacccgag gaagagagaa tctatgacca tattgctgtg attgaccaaa attcttttgt
     1261 ctttaccgat accctccgat ttaatctaac gcttggtttt ccaattgaag ataggcattt
     1321 gttggaggtt ttagaacaag taggcttaga aaagtttgct aatttggaaa tgttgaatgc
     1381 acggttaggg aaagaagata ttcagttgtc aaatggcgaa caacgtaggc ttgaagttgc
     1441 acgtgcaata ttacaaagga aagggatttt gtttgttgat gaagccttat cgggtctgga
     1501 tgtggtcaat gccgagctgt tgagcactat tttactgaat taccctggta ctgtattaaa
     1561 catcgaacac catataccag agcagaagaa ggctttttat acacaagtga ttgacctgaa
     1621 tgactattgt tagaggagag taggtaattg tctcattgga gtctttgttt ttgaagtttg
     1681 taacgaacgg ccaatttcat ttttatattt ctatagataa gacaaatacc ccagataatt
     1741 tcgaaactat ctggggtcta ttatttattt gattttcgaa gagtattaat ccaccgtaat
     1801 cattgcttta atcgttttcc ggttggccat gtctttgtag gcttggtcga tattgtctag
     1861 gctgtaagtt tgggtgaaaa ctcgacctgg gttgatgtca cctttgagga cagcatcgag
     1921 caaaatttcc ttatcatagg ttgtgacaga agcagagcca ccaccgataa tgatattttg
     1981 agcaaaggtt gagccaaggg cgtggttgtt gtagtgtggc acaccgacaa aaccgatacg
     2041 accaccattg tgaagaacac cgagggcttg gtcaatagag gcttctgttc cgacacattc
     2101 gagggcagca tcagctccgc cacctagaat ttcacggact ttggcaatac cttcctcacc
     2161 ccgttcggca acaatagcag tcgctcctga ttccaaagcc atttgctggc ggtctgcgtg
     2221 acggctcatc atgataatct gagaagctcc gcgcattttt gcagcaatga cggcacattg
     2281 tcccactgct ccgtcaccga tgacaacaac tttgtcacca ggtttgacct ctgcaacacg
     2341 cgcagcatgg tagcctgttg gcataacatc tgccagagtc aagagagatt tgatcatgcc
     2401 ttctgagtag tcgcttggct gaccaggaat tttgaccaag gcccagttac catagtggaa
     2461 acgaatgtat tgagactggt agttgttgcc ccagttggtg tagcctggat ggttgtcaca
     2521 agtaccgtca aagccagcac gacaggcatc acagtgtccg caaccatgtg taaatggaac
     2581 aataacgaag tcaccaggaa caagtgttgt aatgtcttcg cctacctctt caacgatacc
     2641 gatggcttca tgaccagagt ttgtgtcacc gtggtcatgg tgaatgtctt ctccgtagcc
     2701 ccaaaggtcc gacccacaaa cacaggcccg aacgaccttg ataatgacat catctttggc
     2761 ttgaaggctt ggtttttcga cttcagcaac ggtcatctta ccggcttttt cataaatagc
     2821 tgctttcata ttcatcacac atttacttgt cagtaaatat cctttctgat tgatatggaa
     2881 tattatacac cttggagttc actccaagtc aagaaaaaaa tgtgtttgaa ttcatatttc
     2941 ctttgtgata gactaagtgt atcggaaaga aaaggagaga taatgacggt tttagttcct
     3001 tacaaacgca tgcccatttg gaatcaggag acggttcccc agcatttttt gaccaagcac
     3061 aataccaagg tgggtacttg ggccaaaatc aaggtcttga gaggtcaact caaatttgag
     3121 ccgatttcag atgacaatga gattttagga gaatatgtct atggtccgac agatgatgtt
     3181 ccctttgtag agccgcaggc ttggcatcga gtgaccttgt tgacagagga tacggagttt
     3241 ttcttggaat ttttctgtca gccagaggat tattttgcta aaaagtacga ctatactcgg
     3301 acgcattcgg aagtcttaga ggccttgaag agaattgagc cttgtaaggt cttggacttg
     3361 ggctgtggtc atggcaggaa cagtctctac ttggctcagc agggatttga ggtgacggca
     3421 gttgataagg atgtgccaag tattcggaca ctcttgcagg tcaaggaagt ggaggacttg
     3481 gacttgcagg ctgggactta cgatattaac tcagctagtc tggagcagga ttacgactgg
     3541 attatctcaa cagtggtctt tatgttcttg gagcgggatc gggtgccagc cattatccgc
     3601 aatatgcagg agcagacacg acctggtggc tataacttga ttgtggcggc catggatacg
     3661 gaagatgcgc cctgtcctat gaatttctcc tttacttttg gagcaggtga gttgaaggaa
     3721 tactaccgtg actgggaact ggtcaaatac aatgaagatt ttggtcaact ccataagcgg
     3781 gatgaaaatg gcaatttcct caaaatgcgg tttgcgacta tgttggctag aaaaaatgtg
     3841 taaaatatat ctagaagcac ttgcaaggca ggtgcttttg cgatacaata tatgtgcaaa
     3901 tgggtatttt attatatgaa aggagaagtc tatgaaaaag acttttgttc gtatagccac
     3961 atttctaatg ttggtttgcc tattccctgc tcaacttgtt caagcctgtt caggctttat
     4021 cattgggaaa gggttgacaa cggatggttc tatcctttat ggtagaacgg aagattatcc
     4081 ctatccacca gataatggag cgcacaataa aaattatatt gtggttcctg cagcaagcta
     4141 tgctgaggga gatatgttgg tggatgagac atttggtttt acagcaccac acttggcaaa
     4201 tgagttcaag tatacctcta cgcctgatgc ggcgcgtggg gatggttcaa atggtaatta
     4261 tggggcgcat ggttttaatg aaaaaggcgt atccatgact gctactgtaa cagctattcc
     4321 aaatgctaaa gtcttggcag ttgatcctct agttgaagct ggagggctgg gagaaccaat
     4381 tttgattgat tatgttcttc ctagggtaac tagtgcgcgt gaaggtgttg agctgattgc
     4441 aaagacaatc gatgaaaaag gctcagcaga agggaatatt gttattattg ctgacaaaaa
     4501 tgaagtttgg tacatggaaa ttttgtcagg acaccaatac gtagccatca agttccctga
     4561 agataagtat gcaatttttg caaatactta ctatctaggt catgttgatt ttaccgatac
     4621 agaaaatgtg attgcttctg caaaggttga agaagtagcc aaacaagcgg ataattatgt
     4681 gacagtcgat gggcagttcc atatcgctaa atcatacggt cctgcaactt atgctgaagc
     4741 agaccgttcc cgcgtgtatg caggtattaa attgatggat ccagcctcgc ctgtaaccta
     4801 tgaagatgct gtgtatgatt tgctacgtca gccaacagat ccaagtcgtc gctttagttt
     4861 acaagatacc tttgccttac aacgtaaccg ttttgaacat cttccagaat ttcgtccaga
     4921 cgatgaagca ggcaaggtaa aacaagggga taatggtgcg aatgaccaag cggcagatgc
     4981 gacttataaa tacgctcttg gtaatgaaaa cgtcatcgat gcccatgttt atcagatcaa
     5041 tagtagctta ccatcagcct tcggtggcac agtgtggttg ggcttggctc agacaaggaa
     5101 tacaccgtat gttccatttt atggtattgt gactgatact tatgaagcct ttaaaaatcg
     5161 ctcagcttct tatgacacga attcatggta ctggacggta caaaatattg ataagatggc
     5221 catctcacac ccagagttat ttggtacatc gattcaagaa aaatggatag cccttgaaaa
     5281 tgactggatt gctgcacagg ccgctcttga tgctcaatat gctggacttt cagaagatgc
     5341 agctgtagcc ctggctccaa ctgtaaccga ggaaaccttg gctcgttcag cagagatttt
     5401 tgcccaacta aaagctgttg aagctgaaat gatagcaaaa attgaagcag caacaactcc
     5461 gtcatccagc agcaccgact catcaagtag tactgaacca tccactagta ccgaaccatc
     5521 atcaagtagt actgaaccat cgaccagcac tgagccatca tcaagtggta ccgaaacctc
     5581 aaccagtaca agtcagtcta caagtgcttc tgacacagga ggagctacgg atacttcctc
     5641 ctcaagcgga acagtagtgt cttctgataa gaaagtaaca cctaccaata aaaaaggtaa
     5701 atcaagtctt cctagtacag gtgagcaagt cagcctcttg ttggtggcgc taggtgttgc
     5761 aggaatttta acagcaattt ttcttcatcg gaaaaagtcc agtaaagaat aaatgaatat
     5821 gtaaaagtag gttggattga tttcaatcta cttttttgaa acaattttgt ttacaaatgt
     5881 agtcgtatat tgtataattt gtttacagat gtagtcagaa aaggagtaac ctatgaaaca
     5941 agcaagctat cccattcaag gcatgacctg tgcttcctgt gctatgacgg ttgagaaagc
     6001 ggttggcaaa ttagcaggaa tggaagaagc tagtgtcaac ctagcgactg aaaaattgag
     6061 tgttcgctat gatgaaaagc ttttgggact agaggatatt cgtcaggcag ttgaaaaggt
     6121 ggggtatcag ttagtcgata acttggtgac cgagtcttat gatattgcag gcatgacctg
     6181 tgcttcctgt gccatgacgg ttgaaaaagc tctgggcaaa ctagagggtg tagaagaagt
     6241 ctctgtcaat ctggcaacag aaaaggcgac tatccgttat agccgtgata ggcaaaatcc
     6301 agccagtctt gaaagagcag ttgagcaagc aggttatcag ctgattcgac cagaagaagt
     6361 agaagaggct gcggacaagg gaccgagcaa ggaagaaaag ctgtggcatc gatttgtctg
     6421 gtcagcagca tttactcttc cactgctcta tattgctatg gggccgatgg tgccttttgg
     6481 tggtctgcct ttaccagctt tgctccatca accgctagtc tatgcgatca gccaagtcat
     6541 cttgctcatc cctatcctct atatcggacg cagttttttc caaaaaggct ttaaaactct
     6601 cttgcaaggc catccaaata tggattcctt gattgctgtt gggacagggg cagccttggt
     6661 tcaaggtctt ttgatgattg cgtttcttct gatggagaaa gaagtggcca tgcacggtca
     6721 ccatccagaa ctgtattttg aatcagccgc cgttatcttg acattgatta ccctaggaaa
     6781 atattttgaa gctaggtcca aaggtcagac ttctgaggcg attaagaaat tgatggatct
     6841 ggctcctaag actgcccaag tgctacgaga tggacaagaa atccaagtgc cgattgaaga
     6901 agtggtggtc tgtgaccagg tcattgttcg tccaggtcag cagattcctg ttgacggtca
     6961 ggttctcgaa ggccagacac gtgtggatga gtctatgctg acgggtgaga gcctaccagt
     7021 gaagaaggca cttggcgata atgtttttgg cggcaccctt aaccagcaag gcgccattac
     7081 catgcaggct accaaggttg gtcgtgatac gactctagct cagataattc gcttggtgga
     7141 agaggctcaa gggtctaagg cacctatctc caaattggct gaccaagttt ctgctgtctt
     7201 tgttccagtt gtcatgggct tggctctctt gtccggtctg gcctggtact tcttgggtca
     7261 agaatcatgg attttttcat taagcatcat catcgccgtc ttggtcatcg cctgcccttg
     7321 tgctctgggc ttagcaacgc cgacagctat catggttggg actggaaaag gggcagaaaa
     7381 cggtcttttg ttcaagtctg gtcaagctat tgaaacccta caaggcgtga acaccattgt
     7441 cttcgacaag actgggacta ttactgaggg caagccacaa gtgacagaca tccacctttt
     7501 gtctactaaa aatcgtgagc aggtcctcca gctggcagca agtagcgagc aattttccga
     7561 gcatccattg gctcaggccc tcctgcaagc tgctcagaca gaaaagattg atctcttgcc
     7621 cgccacagat tttcaggcgc tttcaggccg tggtctttcg gtgacaatag ccgagcagac
     7681 catctatctg ggaaatgaaa ggttgatacg ggaacaggga attgatgttt ccaaaggatg
     7741 tgcagttgcg gaaacatttg cccatcaagc taagacgcct gttttcctag caagccagca
     7801 agaattacta gcagtcattg ccattgctga taaagtaaaa gggaccagcc gtcaggctgt
     7861 ccaggctctg caaaccatgg gactagaagt tgtcatgctg actggagata atgaaaaaac
     7921 tgccaaagcc attgccaagg atgtcggcat tgagcaggtg gtcagtcagg tcctgccaga
     7981 tgacaaggct aaccaagtca agcacttaca agaacagggc aagacagtcg ccatggtagg
     8041 ggatggcatc aacgatgccc cagctctagc tcaagcacat gtgggtctag ccattggttc
     8101 agggactgat attgccattg agtctgccga cattgtcctc atgcatagtg atattttgga
     8161 tgtggtcaag gctgtcaaac tcagccaggc aaccatgcgg accatcaagc aaaatctctt
     8221 ctgggccttt gcctacaatg tgatcggtat tccaatcgcc atgggtctat tacatgtatt
     8281 tggtggacct ctgctcaatc ctatgtttgc aggtgcagcc atggccctta gctcagtgtc
     8341 agtcgtcttg aacgctctgc gattgaaaag ggtgaaaata gacaactagt tttctgactg
     8401 atatcattac taaaaatccc tactgactgg agaggctatc ttctatcagt ctatagggat
     8461 ttttcttagg gtaatgtttt aataatcttt gctggagcgc ctgcaacgag cgtattgtca
     8521 ggtacgtctt ttgtgacaat cgcaccagca gccaccaccg cattcttacc aattgtcact
     8581 ccaggtaaaa tcgtcgcatc tgcacctatc caggcatttt cttggatgcg gacagacttg
     8641 agttcaagct tgtgacgatc ctccgctttc aagggatggt tgacggaaat cagtttagca
     8701 cggggaccaa ttagtacttt atcttcaata aaaatacctc ccaagtctac cataaagaca
     8761 tctttgttga tgtaaatatc ctttccgaaa tgaatatgac ggccaaaatc tgtttggaat
     8821 ggtgtattga taatcacgga ttcgtcaatc ttttccaagg tgagctgttc gacgagtttt
     8881 cgtgtgctgt caactgtttg aatggaagta ttcaattctt gaacaagagg ctggttctct
     8941 ctttgaatat cggatatgag ctggcgtagg ccagcttttt ctggcaccaa gcgatctcta
     9001 tcaataaact ccttaaaaac tgcttcaatc atagtatatt cctccatttc ttgactctta
     9061 tcatatcagg gaaacaaaga tattacaaat acctatttta tatgttttat atgccttata
     9121 agcatggtat aataaagaaa aaaagttgga ggtagatgat ggatattcgt gtattgacct
     9181 attttattgc cattgtacaa acaggatcca tatcaaatgc ggctcagagc ttacacatta
     9241 ctcagcccac cttatcacgg caaataaaag aattggagca agagttagac accattttgt
     9301 tttatcgtgg gagtagagaa attcagctga cagaagcagg gcaatatctc tataatcgcg
     9361 cattggaaat taccagtttg gttaaaaaaa cagaagatac tcttcgccca acggagacga
     9421 tttctggtga cctttacatt ggtgcagcag agagtcaatc attagattgt atcgcaaaag
     9481 caattgcaat tttgaccaat caatacccta atatcaaggt tcatattcaa agcggaaatg
     9541 cagatcacat tttagaacaa ttgcaagatg gtattcaaga tgttgggatt accttcgggc
     9601 gctattctac aaaaaaattt gacagtctgc ctttacttaa ccgagatagt tgggggattc
     9661 tagtccctcg ttttcatcct ttagcttcta aagaagagct agtgctgagc gatgttctag
     9721 cctatccctt gattgtttcc tcccaaagca atgttgataa gtctatcttt gctggattgg
     9781 gcgactatcg aatcgtagcg acttataatc tcctctataa tgcctcttta ttggtgaaag
     9841 caggggttgg gattgctctt tgtttggacg gaattgttga aacaagctat gatggaagtg
     9901 gactggtctt tcgtcctcta gatttgtcaa cggatagctt gcagcttctt tggaaaaaag
     9961 gagtggtgtt gagcccaata gccaagcgtt ttattgaaat tcttgaggaa gacctagaga
    10021 atgcaaattt tgatagataa cttactaaaa ttaccagtca aaaaactggt atttttttac
    10081 agaaacgctt acaatagttt tattaagtgc aagggagata tttatgacaa cctttattgg
    10141 aaaaccagtg accttggtag gtccgcagtt gcgagtggga gatactgccc ctgattttgt
    10201 cctcatggcc aatgatttga gcttgaaaag tctgaaagac tttggcaagc agaccaaggt
    10261 catcagtgtc gttccgtcca ttgatacagg gatttgcgat acccagaccc gtcgcttcaa
    10321 tcaggaactg gctgaccgtg ataatacggt tgtcatcacc gtttcagctg acctgccctt
    10381 tgctcaaaaa cgctggtgtg gtgccgcagg tttggaagat gccatcacct tgtctgatta
    10441 ctatgaccat gcctttggta aatcctacgg tgtgctcatg cgggagtgga atttgttggc
    10501 gcgtgcggtc tttgtcctta atgccgacaa tgaaatcacc tacgtagaat acttggataa
    10561 tgtcaacgaa catccagact atgatgcggc tttagaggct gttaaataaa agaatataac
    10621 gatgcctgtt cggcatcgtt tttcaacgct ttatcctgct agaaatttat tgtgaagata
    10681 cgttgtgata tgagaggatg ttcttgattt agtatgaaac gaggagat
//
LOCUS       DASGAC010000063        10663 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.063, whole genome shotgun sequence.
ACCESSION   DASGAC010000063 DASGAC010000000
VERSION     DASGAC010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10663
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.063"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(200..1690)
                     /gene="lysS"
                     /locus_tag="U1335_001205"
     CDS             complement(200..1690)
                     /gene="lysS"
                     /locus_tag="U1335_001205"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEM5231692.1"
                     /translation="MSTEHFEELNDQQIVRREKMTALAEQGIDPFGKRFERSANSAEL
                     KAQYEDKSKEDLEELGQTAIIAGRIMTKRGKGKAGFAHIQDREGQIQIYVRKDDVGEE
                     NYEIFKKADLGDFIGVEGDVFKTNVGELSIHARKLTHLSKALRPLPEKFHGLTDIETR
                     YRKRYLDLITNRESFDRFVTRSKIISEIRRYLDGLGFLEVETPVLHNEAGGAAARPFI
                     THHNAQNIDMVLRIATELHLKRLIVGGMERVYEIGRIFRNEGMDATHNPEFTSIEVYQ
                     AYADYQDIMDLTEGIIQHTAKAVVGDGPVTYQGTEIAIHEPFKRIHMVDAIKEQTGVD
                     FWQEMSFEEAKALAAEHKVPVEKHHTEVGQIINSFFEEYVEATLIQPTFVYGHPVAVS
                     PLAKKNDEDPRFTDRFELFIMTKEYGNAFTELNDPIDQLERFEAQAKAKELGDDEATG
                     VDYDYIEALEYGMPPTGGLGIGIDRLCMLLTDTTTIRDVLLFPTMK"
     gene            complement(1793..2419)
                     /locus_tag="U1335_001206"
     CDS             complement(1793..2419)
                     /locus_tag="U1335_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM5231693.1"
                     /translation="MKIYFVRHGKTEWNLEGRFQGYSGDSALLPESYQDLEKLGKYLA
                     EIPFDAIYSSDLQRAHSTAVEIAKANHHCQTVLTTQQLREWNFGTLEGSKIAIFRAIY
                     PKQAWALKHNLALFNNDLFEAESVRQVTQRMVDFVQSLKGQDMETVLIVSHGTFLTAS
                     IHRLLGFPLDQLRHRGGLDNASVTILETSDFENFTELTWNDTSYKAKQ"
     gene            complement(2422..2904)
                     /locus_tag="U1335_001207"
     CDS             complement(2422..2904)
                     /locus_tag="U1335_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA deacylase"
                     /protein_id="HEM5231694.1"
                     /translation="MAKKVKIKKTLVDQILDKAKIDHDSLVLNAFEGQLPPGIEEHEI
                     YKTLALTGDKTGPIIGIVPITEHLSEKKLAKISGNKKVSMIPQKDLEKTTGYVHGANN
                     PVGIRQKHNFPIYIDQSALELGHLIVSAGEIGRSIRIDSQVLADFVKADFADLIEGRD
                     "
     gene            complement(2904..3746)
                     /locus_tag="U1335_001208"
     CDS             complement(2904..3746)
                     /locus_tag="U1335_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF368 domain-containing protein"
                     /protein_id="HEM5231695.1"
                     /translation="MASWISRIIKGMIIALGFILPGVSGGVLAAILGIYERLIGFLAN
                     IRKDFKENFLYFVPVGIGGILGIALFSFPVEFLLQHFQVPVLWAFAGAIVGTIPSLLK
                     ESTQKSKRDSIDLAWLIGTFIISGLLLYNLSDLVGTLPATFASFVLAGALIALGVLVP
                     GLSPSNLLLILGIYTPMLNGFKSLDLFGTFLPIAIGGVLAMVAFSKAMDHALKVYHSR
                     VYHFIIGIVSSSTLLILIPQASNKESISYAGANFVTWIAAIVLFILGAWLGLWMSKLE
                     EKYK"
     gene            complement(3849..4397)
                     /gene="thiT"
                     /locus_tag="U1335_001209"
     CDS             complement(3849..4397)
                     /gene="thiT"
                     /locus_tag="U1335_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupled thiamine transporter ThiT"
                     /protein_id="HEM5231696.1"
                     /translation="MSTSKLSILAEVAIFSAIALVFDKFPLFTMPQGGSISLVMLPIL
                     LLALRHGLGVGVLTGGIVGTIQLFYGGYFLNIFQVFLDYALSYAGIGLAGLVAHTLSK
                     QKNLKNATLIITLTSFLGGSIRLVATFLSGIIFYADYAPTGTPVWLYSFTYNISYILP
                     STIIACILLILLYKARPGFYNL"
     regulatory      complement(4456..4551)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(4575..5429)
                     /locus_tag="U1335_001210"
     CDS             complement(4575..5429)
                     /locus_tag="U1335_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 25 protein"
                     /protein_id="HEM5231697.1"
                     /translation="MRKKLNPMIVVVFFLSFFALIFITGVTGNTVNKTEVANEPAVTQ
                     SNTSTSSKTTNSSSSYYIANALEMKPIVDVSAWQRPSEIDYDTLSKNISGAIVRIQSG
                     SHTKNENTATDKNGLDKSFDTHIKEFQARNIPVAVYAYVTGNSIESMQEEAQSFYKAA
                     NKYKPTFYWLDVEEYTMDDMNAGVEAFRKELETLGAKNIGIYVGTYFMEDHSINVDKF
                     DAIWIPTYGDDSGYYNAAPNTDLDYDLHQYTSRGYVSGFEHHLDLNIITTLKDPNEVY
                     QKLFTTPE"
     gene            5542..6045
                     /locus_tag="U1335_001211"
     CDS             5542..6045
                     /locus_tag="U1335_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231698.1"
                     /translation="MHDKSEKVRRVSQLVVLSSLTIVLRVVFGPFPNIKPLTAIFLIV
                     LSYFSLLESWILMILVMVGSGLLFGFGTVVLWQVLSFAFIQFIWWLVIGPFIKKENIP
                     LWLQSLLAGILVFLYGLTISFLSATQFGTSPIVFWLNGLVFDGLHAASTVLFYPIIDY
                     IFRRFYK"
     gene            6042..6407
                     /locus_tag="U1335_001212"
     CDS             6042..6407
                     /locus_tag="U1335_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4430 domain-containing protein"
                     /protein_id="HEM5231699.1"
                     /translation="MKKISIMLMVVFSLFLAACTNTTEKQSDSAIEVTLQITTKDKED
                     RQEVTAEEGASVMDVLKEHHDIVEDNGLITEIDGVSQDTSTNTYWMYKVNGQMADKGA
                     KDLTVANGDEIEFYLETFE"
     gene            6544..7758
                     /locus_tag="U1335_001213"
     CDS             6544..7758
                     /locus_tag="U1335_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEM5231700.1"
                     /translation="MKIDKRQLLNYSILIPYLILSVIGLVMVYSTTSATQIINGRNPF
                     RTVINQAGFWIVSLVAIYTIYRMKLSFLRKKAVIYSVILVEVFLLAISRLFTPINGAH
                     GWIPLPIAGTLQPAEYLKLIIIWYLAHEFAKQQADIRTYDYVSLIKGSWIPKEFTDWR
                     VVSLLLLGLVATLPDLGNATIIVLIMVVMISVSGIAYRWFSTAILGIVAASTVILGTI
                     RILGVETVEKIPLFGYIARRFAAYFDPFGNATNSGLQLTHSYYAMSNGGWLGRGLGNS
                     IEKKGYLPEAHTDFAFSIVIEELGFVGASLILALLFFLIIRIIIVGVRARSPFNAMMA
                     LGMAGMLLIQTFVNIGGISGIIPATGVTFPFLSQGGSSLLIISIGIGFVLNIDASEKR
                     RLIEEEIERTLI"
     gene            7779..10475
                     /gene="ppc"
                     /locus_tag="U1335_001214"
     CDS             7779..10475
                     /gene="ppc"
                     /locus_tag="U1335_001214"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000058210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HEM5231701.1"
                     /translation="MAIQKLENYNNKEAIREEVTILTSILEEVAAQMMPAETFAKIVE
                     LSQLSRQDDYQALIAIISQLNNDELAVISRYFAVLPLLINISEDVDLAYEINHQNNID
                     QDYLGKISTTIDMVSKQENAAEILEKLNVVPVLTAHPTQVQRQSMLDLTKHIHELLRR
                     YRDVKLGLLNKNKWEDELRCYIEIIMQTDMIREKKLKVTNEITNVMEYYNSSFIKAVT
                     KLQREYKRLATEKGIVLNNPRPITMGMWIGGDRDGNPFVTAETLKLSALTQCEVIMNY
                     YDEQLYKLYRNFSLSTSIVKVSTAVKMLADLSEDSSVYRENEPYRRAFHYIQMKLANT
                     RDYLVHNKPSDVRYSNIAEFEADLLAIKQSLVENKSMALLKGDFTELLEAVEAFGFYL
                     ASIDMRQDSSIHEASVAELLASARIVEDYSSLSEEAKCHVLLKQLETDPRILSATHVP
                     KSEQLEKELAIFAAARELKDKLGEEIIKQHIISHSESVSDLLELAVLLKEVGLVDADK
                     ARVQIVPLFETIEDLDNAPDTMRQYLQLDLAKRWIAGNKYYQEIMLGYSDSNKDGGYL
                     SSGWTLYKAQNELTQIGQDYGVNITFFHGRGGTVGRGGGPSYDAITSQPFGSIKDRLR
                     LTEQGEVIGNKYGNKDAAYYNLEMLVSATLDRMVTQMITDPNEIDGYRETMDEIVSDS
                     YRIYRDLVFNNPHFYDYFFAASPIREVSSLNIGSRPAARKTITEIGGLRAIPWVFSWS
                     QNRVMLPGWYGVGSSFKRFIDKHPDNLSKLQKMYESWPFFRSLLSNVDMVLSKSNMNI
                     AFEYAKMCESEEVRNIFHVILDEWQLTKEIILSIEQNDELLAELPFLKASLDHRMPYF
                     NVLNYIQIELIHRLRRGELSKEQENLIHITINGVATGLRNSG"
BASE COUNT         3103 a         1990 c         2330 g         3240 t
ORIGIN      
        1 aaacacataa atgacagtag aaaatctgct gttatttttt gttgtctgga aactaaaaaa
       61 acttcccttg gaataatcca agagaagcta taagtcgtta tcagttctta taactatttg
      121 tataagctgt ggtaaatttt tggtaagttg taccattcac actatgggaa cgttgattta
      181 acagcgtttc taagaccgct tatttcatcg tcggaaatag caacacatcc cgaatagtag
      241 tagtatctgt caaaagcatg cagaggcggt cgataccgat tccgagtcca cctgttggtg
      301 gcataccgta ttcgagggct tcgatgtaat cgtagtcaac gcctgtcgct tcgtcgtcac
      361 cgagttcttt agctttggct tgggcttcga agcgttccaa ttggtcgatt gggtcgttca
      421 attctgtaaa ggcatttccg tattccttgg tcatgatgaa gagctcaaag cggtctgtga
      481 agcgtgggtc ttcgtcgttt ttcttagcca gtggagatac ggctactggg tgaccataga
      541 cgaaggttgg ttggataaga gttgcttcaa catactcttc aaagaagctg ttgatgattt
      601 gaccaacttc tgtatggtgt ttttccacag ggaccttgtg ctcagctgca agggctttcg
      661 cttcctcgaa gctcatctct tgccagaagt ccacgccagt ttgttcctta atggcatcaa
      721 ccatgtggat acgcttgaat ggctcgtgga tagcaatttc agtgccctga taagtcacag
      781 gaccgtcgcc gacaacagcc ttggcagtgt gctggataat gccttctgtc aagtccatga
      841 tgtcttggta gtctgcataa gcttggtaaa cctcaataga agtgaactca gggttgtggg
      901 tcgcatccat gccttcgtta cggaagatac ggccgatttc ataaacgcgt tccataccgc
      961 cgacaatcaa gcgtttgagg tggagttctg tcgcgatacg aagcaccatg tcaatgtttt
     1021 gggcattgtg gtgggtgatg aatggacggg ccgcagcacc accagcttcg ttgtgaagga
     1081 caggtgtctc cacttccaag aaaccaagtc cgtcaaggta acggcggatt tctgagatga
     1141 tttttgatcg agtcacaaaa cggtcaaagc tctcgcggtt agtaatcaag tccaaataac
     1201 gtttgcggta gcgggtctcg atgtctgtca agccgtggaa tttttctggc aatgggcgga
     1261 gcgctttaga caagtgagtc aacttgcgag catggataga caactcacca acgtttgtct
     1321 tgaagacatc tccctcgaca ccgataaagt caccaaggtc tgcttttttg aagatttcat
     1381 agttttcttc gccaacatcg tccttacgaa cgtagatctg aatttgaccc tcgcggtctt
     1441 gaatgtgggc gaagccagcc ttacctttac cacgcttggt catgatacgg ccagcgatga
     1501 tcgctgtttg gcccaattct tccaagtctt ctttcgattt gtcttcgtac tgggccttca
     1561 attcagctga gttggcagaa cgctcaaaac gttttccaaa tgggtcaatg ccctgttcag
     1621 caagagccgt cattttttca cgacggacaa tctgttggtc atttaattct tcaaaatgtt
     1681 cagttgacat aaaaatttta ttcctccaaa gtctattatt tttattttat catagaagag
     1741 agaaaaaatc agtataaatt gctaatagga taggaaaaaa cagcagaaaa ttctactgtt
     1801 ttgctttata gctggtgtca ttccaagtta attctgtaaa gttttcgaaa tcgcttgttt
     1861 ctaaaatagt aaccgatgca ttatccaaac cgcctcggtg acgaagttgg tcgagaggaa
     1921 agcccagcag tcgatgaatg gaagcggtta gaaaggtacc atggctgacg atgaggactg
     1981 tttccatgtc ttgccctttc agcgattgga cgaagtccac cattcgttga gttacttggc
     2041 gaacgctctc agcttcaaat aagtcattgt taaaaagtgc tagattatgt ttgagtgccc
     2101 aggcttgttt ggggtagatg gcacgaaaaa ttgctatctt gcttccttct aacgttccaa
     2161 aattccattc acgtaattgt tgtgtggtta gaacggtttg gcaatggtga ttggcttttg
     2221 caatttctac ggcagtgcta tgtgcgcgct gcaaatcact agaataaata gcatcaaagg
     2281 ggatttcagc aaggtatttg cctagttttt ctaaatcctg ataagattca ggcaaaagag
     2341 ctgaatcacc agaataacct tgaaaacggc cttccagatt ccactcggtc tttccatgtc
     2401 ggacaaagta gattttcaag tctagtccct cccctcaatc aaatcggcaa agtcagcttt
     2461 tacaaaatca gctaatacct gactgtcaat tcgaatcgac cgaccaattt ctccagcaga
     2521 gacaatcaag tgaccgagtt caagggcaga ttgatcaatg tagattggga aattatgctt
     2581 ctgacgaatg cccacgggat tgttggcacc gtggacgtag ccagttgtct tttccaagtc
     2641 tttttgtgga atcatgctga cctttttatt accagagatc ttggctaatt ttttctcaga
     2701 taggtgttct gtgattggaa caatgccgat aattggtcca gttttatctc ctgtcaatgc
     2761 cagtgttttg taaatttcgt gttcttcaat tcctggtgga agttgacctt cgaaggcatt
     2821 taaaacaagg ctatcatgat cgatcttagc cttgtctaat atttggtcca ccaaggtttt
     2881 ctttatttta accttttttg ccattattta tatttttcct caagtttact catccaaagc
     2941 cctaaccatg ctcctagtat aaataggaca atagcagcaa tccatgtaac aaagttagcg
     3001 ccagcatagg aaatagactc tttattactt gcttgtggaa tcaaaattag gagagtggat
     3061 gatgagacga taccaataat aaagtgataa acacgtgaat ggtatacttt cagagcgtgg
     3121 tccattgctt ttgaaaatgc aaccattgca agaacgccac cgattgcgat tggtaggaag
     3181 gtaccgaata gatcaagtga tttgaaacca tttagcattg gcgtgtagat acccaaaatc
     3241 aatagtaagt ttgaagggct gagtccagga acaagtaccc ctaaagcaat caaggcacct
     3301 gccaatacaa aactagcaaa agtagctgga agtgtcccga caagatcgct taaattgtaa
     3361 agtaggagac cagaaatgat gaatgttcca atcaaccaag ccaaatcaat gctatctcgt
     3421 ttgctctttt gagttgattc tttaagtagg ctaggaatag ttcccacaat tgctcccgca
     3481 aatgcccaca aaactgggac ttggaaatgt tgcaataaaa attctacagg gaaggagaaa
     3541 agtgcgattc ccaaaattcc accaattcct acaggaacaa aataaagaaa gttttccttg
     3601 aaatcttttc gaatatttgc taaaaatcca attagtcgct catagattcc gaggatagca
     3661 gcgagtaccc ccccagagac accaggtaag ataaagccga gtgcgataat cataccttta
     3721 ataattcttg aaatccaaga agccataatt tcctccaaaa tgtattataa cgttcctatt
     3781 atagcataaa gcaagtaaaa ataattaaaa agactgcctg ttagataaaa tccagcaggc
     3841 agttttggtt aaagattgta aaaacctggt cttgctttgt agagtaagat gagtaatatg
     3901 caagcgatga tagttgaagg gaggatgtag ctgatattgt aggtaaagga atagagccag
     3961 acaggggtac cagttggggc gtagtctgcg tagaaaataa ttcctgataa gaaggtagct
     4021 accaatcgga tgcttcctcc tagaaaacta gtcagggtaa tgatgagagt agcatttttt
     4081 agattttttt gtttggatag ggtgtgtgcc actaaacctg ctaaaccaat tccggcgtaa
     4141 gaaagtgcgt agtcaagaaa aacttgaaaa atgtttagga agtagccacc gtagaaaagt
     4201 tgaatggttc cgacaatacc accagtaaga acccccaccc ctagtccgtg gcgtagcgca
     4261 agcagtaaga ttggaagcat gactaaggag atagatccac cttggggcat tgtaaagagt
     4321 gggaatttat caaagacgag ggcaatggca gaaaagatag cgacttcagc taggatggac
     4381 aattttgatg tggacataaa aagactcctt tgtagattgc agacaaagga gtgtttatag
     4441 cagagtatag tatcattcta taaagcacac aattcctacg ctagtgttaa ctagatcagg
     4501 ttcgaggatt tcgcagtcgc gatctcagcc gaagcactcc tttgtgtata tgtaattggt
     4561 gggattataa cattttattc aggtgttgta aatagcttct gataaacttc attaggatcc
     4621 ttcagggtag taataatgtt gaggtctagg tggtgctcaa agccgcttac ataaccacgt
     4681 gaggtatatt ggtgaagatc gtagtccaag tcagtatttg gagcggcatt gtagtagcca
     4741 gaatcatcac cgtatgtagg aatccaaatg gcgtcaaatt tatccacatt gatgctgtgg
     4801 tcttccatga aataggttcc gacgtaaatt ccaatgtttt tagcaccgag agtttctaac
     4861 tcttttcgaa aagcctccac tccagcattc atatcatcca tggtatattc ttcaacgtct
     4921 aaccaataga aggttggctt gtacttattt gcggccttat aaaagctttg agcttcctcc
     4981 tgcatgctct caatgctatt tcctgtgaca taggcataga cagcaacagg tatatttctt
     5041 gcctggaatt ctttaatatg ggtatcaaag gatttatcta atccattttt atcagtcgct
     5101 gtattttcgt ttttagtgtg tgagccactt tgaatacgaa cgattgcgcc agaaatattt
     5161 ttgctaagtg tatcgtagtc aatttcagac ggtctctgcc aagcagaaac gtcgacgata
     5221 ggtttcattt cgagcgcatt tgcaatgtaa taacttgaac tagaatttgt tgttttagaa
     5281 cttgtactgg tgtttgattg tgtgactgcg ggttcgttag ctacctccgt cttatttaca
     5341 gtatttccag tcaccccagt gatgaaaata agagcaaaga aggataggaa aaaaacaaca
     5401 acaatcatcg gatttagttt ctttctcatc tcctcaattc taccgtaaaa tcatgaaaaa
     5461 atcaaaaaaa tacgattcaa gaaatagtaa aagattatct gaacttgaca taataaaggg
     5521 aatagggtag gctaaattgg tatgcatgac aaaagtgaaa aagtaagacg tgttagtcag
     5581 ctagttgttc tgtcctcttt gacgattgtt ttaagggtgg tttttgggcc atttcccaat
     5641 ataaagcctc tcacggctat tttcctcatt gttctgtcct atttcagttt gctggagagc
     5701 tggatattga tgatactagt aatggtaggg agtggcttgc tttttggatt tggcacagtt
     5761 gttttgtggc aagttcttag ttttgctttt atccaattta tatggtggtt ggtaatcggt
     5821 ccttttatca aaaaagagaa cattcccttg tggctacaga gtcttctggc ggggattctt
     5881 gtctttttgt atgggctaac gataagtttt ttatctgcta cacagtttgg gacttcccct
     5941 atcgtctttt ggcttaatgg tctagtcttt gatggtttac acgctgcttc aacagttttg
     6001 ttttatccaa ttattgatta tatttttagg agattttata aatgaaaaaa attagtatta
     6061 tgttgatggt tgtcttctcg ctcttcttgg ctgcttgtac aaacactact gagaaacaga
     6121 gtgactcggc tatcgaagtc actttgcaga ttacaaccaa ggacaaagag gatcgtcagg
     6181 aagtcactgc ggaagaaggt gctagtgtca tggatgtact taaagaacat catgatattg
     6241 tagaagacaa tggtttgata acagaaattg atggtgttag ccaagatacg agtaccaata
     6301 catactggat gtataaagtt aatggccaaa tggctgataa aggggcgaaa gaccttacag
     6361 ttgcgaatgg ggatgaaatt gaattttatc ttgaaacatt tgaatagata tgaaaggctt
     6421 cggccttttt cttgtcgaca aaagttagtt ccgaatgttt gcagagcaac ttagaaagtg
     6481 ataagtattt ttatataaag tatgctataa taagagctat actcgaagaa ggttggataa
     6541 gcaatgaaga ttgacaaacg ccagttgttg aattactcca tactgattcc ctatctcatc
     6601 ttatcggtga ttgggttggt catggtctat tcgacaacca gtgctacgca aattattaat
     6661 ggtagaaatc catttagaac agtgattaac caggcaggat tctggattgt cagcttggta
     6721 gcaatctata cgatttatcg tatgaaatta agttttttac gcaagaaagc cgttatctat
     6781 tcggttattt tggtagaagt atttctgtta gctatttctc ggttgtttac tccgattaac
     6841 ggggctcatg gctggattcc tctgccaatc gcaggaacct tgcagccggc agaatatttg
     6901 aaattaatta tcatttggta tctggcacat gagtttgcaa aacaacaggc ggatattcgg
     6961 acttatgact atgtatcgtt gattaaagga agttggatcc cgaaagagtt tacagattgg
     7021 cgggtggtca gtctgctcct ccttggtcta gttgcgacac tgccagactt gggaaatgcg
     7081 acgattattg tgctgattat ggtcgtgatg attagtgtga gtgggattgc ctatcgctgg
     7141 ttttcaacag cgattttggg aattgtagcc gcctcaacag ttattttagg gacgattcgt
     7201 attttgggtg tagaaacggt ggaaaaaatt ccgctctttg gttatattgc tcgtcgtttc
     7261 gctgcctatt ttgatccatt tggtaatgcc accaactcag gtcttcaatt gactcattct
     7321 tactatgcga tgagtaacgg tggatggctt ggacgtggtt tgggaaattc gattgagaaa
     7381 aaggggtatc taccagaggc ccacaccgac tttgcatttt cgattgtcat tgaagaactc
     7441 ggttttgtcg gagctagttt aattctagcc ttattgttct ttttgattat tcgaattatt
     7501 attgtaggcg tccgtgctcg tagtccattt aatgcgatga tggcacttgg aatggcaggt
     7561 atgcttctaa ttcaaacatt tgtcaatatc ggaggaattt caggaattat tcctgcaacg
     7621 ggggtaactt tccccttctt gtcacagggt ggatcgagtc ttttgattat ttccatcggg
     7681 atagggtttg ttttgaatat tgatgctagt gaaaaacgtc gattaattga agaagaaata
     7741 gagcgtacgc taatttagag ataggaaaga ggtaggagat ggctattcaa aaattagaaa
     7801 actataacaa caaggaagca atccgtgaag aagtaacgat tctaacatct attttggaag
     7861 aagtagcagc ccaaatgatg cctgcagaga cttttgctaa aattgtagaa ttatcacaat
     7921 tgtctcgtca agatgattat caggcattga ttgctattat cagtcagttg aataatgatg
     7981 aactagcagt tatttctaga tactttgctg ttttgccact tttgattaat atatcagaag
     8041 atgttgactt ggcctatgaa atcaaccatc aaaacaatat tgatcaagat tatcttggta
     8101 agatttcaac aacaattgat atggtttcca aacaagaaaa tgcagctgaa atccttgaaa
     8161 agttgaatgt tgttccagtc ttgacagccc atcctactca ggttcaacgc cagtctatgc
     8221 ttgatttaac caagcatatt catgagttgc ttcgtcgtta tcgcgatgta aaattgggct
     8281 tgctcaataa aaacaaatgg gaagatgagc tccgttgtta cattgaaatt atcatgcaga
     8341 cggatatgat tcgtgagaag aagttgaagg taaccaacga aatcacaaac gttatggagt
     8401 attacaattc ttcctttatt aaggctgtca ctaagttgca gcgggaatac aaacgtttgg
     8461 ccactgagaa aggaatcgtc ttaaataatc ctcgtccaat tacaatgggt atgtggattg
     8521 ggggagaccg tgatggaaat ccatttgtta ctgcggagac cttgaagctg tcagccttga
     8581 ctcagtgtga agttattatg aattattacg atgagcaact ctataaactc tatcggaatt
     8641 tttcgctctc gacttccatt gtaaaggtat ctacagcggt taagatgctg gcggatttat
     8701 ctgaagatag ttctgtctac cgtgaaaatg agccttatcg tcgtgctttt cactatattc
     8761 agatgaaact tgcaaataca agagattatc tagttcacaa taagccgtca gatgtccgct
     8821 atagtaatat agccgagttt gaagctgatt tattagccat caaacaatct ttggtcgaaa
     8881 ataaatcaat ggcgctattg aaaggtgatt ttacagaatt gcttgaagcg gttgaagcgt
     8941 ttggtttcta cctagctagt atcgatatgc gtcaagactc ttccattcat gaagcaagtg
     9001 ttgcggagct attggcctct gcccgtatcg tagaagacta ctccagttta tctgaggaag
     9061 ctaaatgcca tgttcttttg aaacagttgg aaacagatcc acgcattctt tctgcaacgc
     9121 acgtaccaaa gtcagaacaa ttagaaaaag aattggccat ctttgctgct gcgcgtgaat
     9181 tgaaagataa gctaggtgag gaaatcatca agcaacatat tatttcacac tcggagagtg
     9241 tttctgattt gctggaatta gctgtcctat taaaagaagt tggtctagta gatgccgata
     9301 aggcccgtgt tcagattgtt ccactttttg agacaattga ggacttagat aatgcacctg
     9361 ataccatgcg tcaatatctg caattagatt tagcgaaacg ttggattgca ggcaataaat
     9421 actaccaaga aatcatgctt ggctactcag attccaacaa ggatggtggc tacctatcct
     9481 ccggctggac actctacaaa gcacagaatg aattgacgca aattggtcaa gactacggag
     9541 taaacatcac cttcttccac ggtcgtggag ggactgttgg tcgtggtggt ggtccgtcct
     9601 acgatgcgat tacatctcag ccatttggtt ccatcaagga ccggcttcgt ttgacagaac
     9661 aaggcgaagt gataggcaat aaatacggta acaaagacgc agcctactat aatttagaaa
     9721 tgctggtatc tgcaacgctt gaccgtatgg ttacacaaat gattaccgat ccaaatgaaa
     9781 tcgatggcta tcgcgaaacc atggatgaaa ttgtatcaga tagctatcgt atatatagag
     9841 atcttgtgtt caataatcca catttttatg attatttctt tgccgctagt ccaattcgtg
     9901 aagtatcaag cctgaacatt ggctcacgtc ccgcggctcg aaaaaccatc acagaaatcg
     9961 gtggtttgcg tgcgattcca tgggtattct cctggtcaca aaaccgtgtc atgttgccag
    10021 gttggtatgg agttggttca agtttcaaac gctttattga taagcaccct gataatttgt
    10081 ctaagttaca aaaaatgtac gaatcttggc cattcttccg ttcacttcta tcaaacgtgg
    10141 atatggtatt gtctaaatcc aatatgaata tcgcatttga atatgctaaa atgtgtgaaa
    10201 gcgaagaggt acgaaatatc ttccatgtca ttttagatga atggcagttg accaaagaaa
    10261 ttattttgtc aatcgagcaa aatgatgagc ttttagcaga actaccgttc ctaaaagcta
    10321 gtcttgatca tcgcatgccg tatttcaacg tacttaacta tattcagatt gagttgattc
    10381 atcgtcttcg tcgtggagaa ttgagcaaag aacaagaaaa cctcatccac atcaccatca
    10441 acggtgtggc gacaggtttg cgcaactcag gttaataggc ataaaacaac tcaataaaaa
    10501 tcaaaaatag aatactaagg tcaattactg tgtgtaaaat ttcaatatct aagctcagat
    10561 tggaaatcat agtttttgac tagccgtact ctgttcaaaa acttaaaaaa tgaaataccc
    10621 catattcaaa tggattggta gattgctatt tttgatttta aat
//
LOCUS       DASGAC010000064        10617 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.064, whole genome shotgun sequence.
ACCESSION   DASGAC010000064 DASGAC010000000
VERSION     DASGAC010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10617
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.064"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(218..2212)
                     /gene="pknB"
                     /locus_tag="U1335_001215"
     CDS             complement(218..2212)
                     /gene="pknB"
                     /locus_tag="U1335_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Stk1 family PASTA domain-containing Ser/Thr
                     kinase"
                     /protein_id="HEM5231702.1"
                     /translation="MIQIGKIFAGRYRIVRQIGRGGMADVYLARDLILDGEEVAVKVL
                     RTNYQTDQIAIQRFQREARAMAELDHPNIVRISDIGEEDGQQYLAMEYVNGLDLKRYI
                     KENAPLSNDVAVRIMGQILLAMRMAHTRGIVHRDLKPQNVLLTSNGVAKVTDFGIAVA
                     FAETSLTQTNSMLGSVHYLSPEQARGSKATIQSDIYAMGIILFEMLTGRIPYDGDSAV
                     TIALQHFQKPLPSVREENANVPQALENVVLKATAKKLNERYKSVAEMYADLASALSMD
                     RRNEPRVELEGNKVDTKTLPKLSQANVETKVPHTNSSAQVSATDKGPGKKEVAKSGNK
                     PVSKPRPGMRTRYKVLIGAILLTVIATGLMFFNTPRTVTVPDVSGQTVEKATEMIEVA
                     GLEVGNITEEATATVDEGLVIRTSPAAKTTRRQGSKIDIVVATAAMVSIPDVTDKDSD
                     TARQELEALGFQVTIKEEYSEKVAQGLVIKTDPGANSSAEKGAKITLYVSKGVAPQVV
                     PNVVGKTQENATQILQTAGFSIGAITQEYSSSVTAGQVISTDPVANTELTKGSIINLV
                     VSKGKELIMPDLTSGNYTYSQARSQLQTLGVNVESIEKQEDRSYYSTTSDIVIGQYPA
                     AGATIDGTVTLYVSVASTGTSSDSSTGSSTSTSTSTDSGR"
     gene            complement(2212..2949)
                     /locus_tag="U1335_001216"
     CDS             complement(2212..2949)
                     /locus_tag="U1335_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Stp1/IreP family PP2C-type Ser/Thr phosphatase"
                     /protein_id="HEM5231703.1"
                     /translation="MEIALLTDVGQKRSNNQDYINRYKNRAGIDLVVLADGMGGHRAG
                     HIASEMAATDLGAAWVDTQLVTLNDVREWMVAIIDAENQKIHELGQTEEYKGMGTTLE
                     AVVVIDNQMIYAHVGDSRVGLIRDGEYTRLTNDHSLVGALVRAGQLTEEEAQRHPQKN
                     IVTQSIGQAEPIEPDIALKTLEVGDYVLINSDGLTNMVPTEDIRDIVLSDVSIESKVE
                     TLVRFANNAGGLDNITVGLLHITEEAR"
     gene            complement(2987..4300)
                     /gene="rsmB"
                     /locus_tag="U1335_001217"
     CDS             complement(2987..4300)
                     /gene="rsmB"
                     /locus_tag="U1335_001217"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HEM5231704.1"
                     /translation="MVINKHETARSLALSVLEQVFDQGAYSNIALNKALESSCLSAQD
                     KGLATELVYGTVSRKITLEWYLAHFIEDREKLDTWVYYLLMLSLYQLVYLDKLPTHAV
                     VNEAVNIAKRKPGTDKFVNAILRKLSQDSLPKPADIKRKNKRLSVQYSVPVWLVQTLI
                     AEYGDERAEKIFQSLHDRNKASVRVTDGQQVERLAEELGAQHSQLSPVGLVKSHGHFA
                     GTDYFKKGLITIQDETSQLVAPTLDIQGDEIILDACAAPGGKTCHMASYLTSGKVIAL
                     DLYEHKLTLIEENARRLGLADKIETKGLDASRVHEEFGPDTFDKILVDAPCSGIGLIR
                     RKPDIRYNKASMDFDSLKTIQLQILDSVCQSLKIGGIITYSTCTIITKENQEVIQEFL
                     QNHPNFEQVTLEHPQTDIMVDGCLLITPEQYKTDGFFIGQLRRKS"
     gene            complement(4287..5225)
                     /locus_tag="U1335_001218"
     CDS             complement(4287..5225)
                     /locus_tag="U1335_001218"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEM5231705.1"
                     /translation="MTKLIFMGTPAFSATVLKGLLADDQYEILAVVTQPDRAVGRKKV
                     IQMTPVKEVALEYNLPVYQPEKLSGSQEMDELMNLGADGIVTAAFGQFLPTKLLNSVD
                     FAVNVHASLLPKYRGGAPIHYALINGDERAGVTIMEMVKEMDAGDMISSDSIAIEESD
                     NVGTLFEKLAVVGRDLLLQSLPAYIAGDLKPVAQNPEQVTFSPNIQPEEEVLDWNKTA
                     RQLFNHIRGMYPWPVAYTYWQGERFKIQEAVEVGGEGPVGQVIARSKKELIIATGQGA
                     LSLKTVQPAGKPKMTIADFLNGAGRDIAVGDQFGDQ"
     gene            complement(5368..7758)
                     /locus_tag="U1335_001219"
     CDS             complement(5368..7758)
                     /locus_tag="U1335_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEM5231706.1"
                     /translation="MLAQVIVDVPLMQTDQAYSYQVPADLEEGLMVGVRVHVPFGKGN
                     RLIQGIIVDLIDEDDALDLQDLKELAEVLDYSPVLNQEQFWLADQMRKSVFSYKITLL
                     KSMLPSLLNSTYDKLLRPGHGLEMAEQVSLFGDKEQIRFSDLDVKEQGKIMRLAQSGK
                     ILVDYVAKDKKQIKTEKWYRVCLEKLREADISNRAKKRQQLREFLLEHSEAQLLSNLK
                     SDYSADTLRYFQEKGYIEVWEEEVSRTQGVFDRVEKTQALDLNPEQAIAVREIVASIG
                     QESQTFLLQGVTGSGKTEVYLQVIDRVLKMGKTAIMLVPEISLTPQMTNRFISRFGQQ
                     VAILHSGLSDGEKYDEWRKIEAGNAQVVVGARSAIFAPLTNLGVIIIDEEHEATYKQD
                     SNPRYHARDVAKLRADYNRATLVLGSATPSLETRARASRGVYGRLTLNQRANPLARIP
                     EVEVVDFRDYIGQQEASNFTPVLIEKIREKLARKEQVVLMLNRRGYSSFVMCRDCGSV
                     DQCPNCDISLTLHMDTKTMNCHYCGFQKGIPQTCPNCQSRSIRYYGTGTQKAYDELQE
                     LLPEARILRMDVDTTKKKGAHEDLLERFGRGEADILLGTQMIAKGLDFPNVTLVGVLN
                     ADTALNLPDFRSSERTFQLLTQVAGRAGRADKEGEVLIQTYNPNHYAIAFAKEQNYEG
                     FYRYEMGIRKNLGYPPYYFTVGLTFSHKSEEFVVKKAYETVAFLRQHLTDAIQILGPT
                     PKPIARTHNLYHYQIILKYRHEDRLEEVLNQILDWTQERENQDLRLIIDNEPQNMM"
     gene            complement(7843..8157)
                     /locus_tag="U1335_001220"
     CDS             complement(7843..8157)
                     /locus_tag="U1335_001220"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001817694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEM5231707.1"
                     /translation="MMLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAKPTQEFTSV
                     KSTLRALEEIESGNVVIHPDPEAKREAVRRRAEEAKRLAEEEEKKIKEQIAKEKEEGE
                     KI"
     gene            complement(8181..8807)
                     /gene="gmk"
                     /locus_tag="U1335_001221"
     CDS             complement(8181..8807)
                     /gene="gmk"
                     /locus_tag="U1335_001221"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEM5231708.1"
                     /translation="MKERGLLIVFSGPSGVGKGTVRKEIFESSDNKFEYSVSMTTRPQ
                     RPGEVDGVDYFFRSREEFEDLIRQGQMLEYAEYVGNYYGTPLTYVNQTLDKGIDVFLE
                     IEVQGALQVKKKVPDGVFIFLTPPDLEELQDRLIGRGTDSEEVIAQRIERAKEEIALM
                     REYDYAVVNDEVPLAAERVKRIIEAEHFRVDRVIGRYDEMIREQIAER"
     gene            complement(8928..10541)
                     /locus_tag="U1335_001222"
     CDS             complement(8928..10541)
                     /locus_tag="U1335_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEM5231709.1"
                     /translation="MNIITVVVTLVSALIGLVIGYFAISLKMKSAKETAELTLLNAEQ
                     EASNVRGRAEEQAEVILKTAERDRQTLKKELLLEAKEEARKYREEIAEEFKSERQELK
                     QIESRLTERATSLDRKDDNLTNKEKTLEQKEQSLTDKAKHIDEREQEVVKLEEQKALE
                     LERVAALSQEEAKEIILTDTRDKLTHEIATRIKEAEREVKERSDKMAKDLLAQAMQRI
                     SGEYVAEQTITSVHLPDDAMKGRIIGREGRNIRTFESLTGIDVIIDDTPEVVVLSGFD
                     PIRREIARMTMETLLQDGRIHPARIEELVEKYRVEMDNRIREYGEAAAYEVGAPNLHP
                     DLIKIMGRLHFRTSYGQNVLRHSIEVAKLAGVLAAELGENVNLARRAGFLHDVGKAID
                     REVDGSHVEIGTELAKKYKENPIVINAIASHHGDVEATSTIAVIVAAADALSAARPGS
                     RRESMEAYIKRLQDLEEIANSFEGIKQSYAIQAGREIRIIVHPNKVTDDQITILAHDV
                     REKIENNLDYPGNIKITVIRETRATDVAK"
BASE COUNT         2816 a         2611 c         1991 g         3199 t
ORIGIN      
        1 gttcaaagca acgagatgca ggctatactt gggtacggca aagtaaatta acgaagcaag
       61 caaaataaac taaacatgac tataaactat gcaaatcact cctaggccat cactcttgat
      121 ggacagaagg aaacaatttt ggcataaggg atcgctcaca agctatgctc tctaatcaag
      181 agaaaaaggt tcggcatctg cccaacctta ttcatcttta tcgtccgcta tctgttgaag
      241 tacttgtgct ggtggaactt cctgttgagg aatcactact agtgccggtc gatgcaacgg
      301 agacatacaa ggtaactgtt ccatcaattg ttgctccagc agcaggatat tgtccaatga
      361 cgatgtcact tgtcgttgag taatagcttc tatcttcttg tttttcaata ctttccacat
      421 tgacgcctag cgtttgtaat tgactacgtg cctgtgaata ggtgtaattg ccagatgtta
      481 aatcaggcat aatcaattct tttccttttg aaacaactag attgatgata gaaccttttg
      541 tcaactctgt attggcaacg ggatctgtac tgataacctg acccgcagta acagatgagc
      601 tatattcctg agtaatagct ccaatactga agcctgctgt ctgaagaatt tgagtagcat
      661 tctcctgagt ttttccaaca acgtttggca caacttgtgg cgctactcct ttggaaacat
      721 aaagggtaat tttcgccccc ttctcagcag aactatttgc tcctggatct gttttgataa
      781 cgagtccttg agcaactttt tcgctatatt cttcttttat tgtcacttgg aaaccaagag
      841 cctccaattc ctgccgtgca gtatcagaat ccttatctgt cacatctgga atagatacca
      901 tcgcagccgt tgctactaca atatcaatct tacttccttg acgtctggtc gtctttgcag
      961 ccggagaggt ccgtattacc aagccttcat ctacagtcgc tgtcgcttct tctgtgatgt
     1021 ttccaacttc caatcctgcc acttcaatca tttctgtagc tttttcaacg gtttgaccag
     1081 acacatcagg gactgtaact gttcgtggag tgttgaaaaa catgagtcca gtcgctatga
     1141 ctgttaacaa aatagcccct atcaagactt tgtagcgtgt acgcatacct ggccttggtt
     1201 ttgaaacagg cttatttccc gacttcgcca cttctttctt acccggcccc ttatccgtcg
     1261 ctgaaacttg ggcagaactg tttgtatgcg gtactttcgt ttcaacattg gcttgagaga
     1321 gtttcggcaa ggtttttgta tcaaccttgt tcccttctag ttcaaccctg ggttcattcc
     1381 gacggtccat ggatagagcc gaagctaaat ctgcgtacat ttctgcaacc gacttatagc
     1441 gctcgtttaa tttttttgcc gttgctttta gtacaacatt ttctaaggcc tgaggtacgt
     1501 tggcattctc ttctctaaca gatgggagag gtttttggaa atgctgaaga gcgatcgtca
     1561 cagcactgtc tccatcatag ggaatgcgac ccgtcaacat ttcaaaaagg atgatcccca
     1621 tcgcataaat gtcactttga atggtcgctt tcgaaccacg cgcctgctca ggtgaaagat
     1681 agtgaacaga ccccaacatg gagttggttt gtgtcaaact cgtttcagca aaggcaactg
     1741 caataccaaa gtctgttact ttagcgactc cattggaagt caaaaggacg ttctgaggtt
     1801 tcaaatctcg atggacaatt cctctcgtgt gcgccattcg catagcaagg agaatctgtc
     1861 ccataattcg caccgcaaca tcgttggaga gtggtgcatt ttcttttata taacgtttta
     1921 aatcgaggcc attgacatat tccatagcca gatactgttg accatcttct tcaccgatgt
     1981 ccgaaatacg aacgatattg ggatggtcaa gttctgccat ggcacgcgct tcacgttgaa
     2041 aacgctggat agcaatttga tctgtctgat agttggtccg aagaactttg acagcaacct
     2101 cttctccatc taaaatcaaa tctcttgcta ggtaaacatc tgccatacct cctcgaccaa
     2161 tttgccgaac gattcgatac cgaccggcaa agatcttacc gatttgaatc attacctagc
     2221 ctcctccgta atgtgaagca aacctactgt aatattatct agaccgcctg cattattggc
     2281 aaaacgtaca agtgtttcta ccttgctttc aattgaaaca tcactcaata caatatcacg
     2341 aatgtcctcg gttggcacca tattggttaa gccatcgctg ttaataagga cataatctcc
     2401 aacctcaaga gttttcaaag caatgtctgg ttcaattggt tcggcttgtc caatggactg
     2461 cgttacaata tttttttgag gatgacgttg tgcttcttct tctgtgagct gaccagctcg
     2521 aacaagggca cctaccagcg aatggtcgtt ggttagacgt gtatattcgc catctctaat
     2581 caatccaact cgtgaatctc caacatgggc atagatcatt tggttgtcga tgacaacaac
     2641 tgcttcaaga gttgttccca tccccttgta ttcttctgtc tgtccaagtt catgaatctt
     2701 ttggttttca gcatcaatga ttgcaaccat ccattcacgg acatcattca aggtcactaa
     2761 ttgagtatca acccaagcag ctcccaaatc tgttgctgcc atttcactgg caatatgacc
     2821 ggcacggtga ccacccattc catcagctaa cacaaccaaa tcaatccctg cgcggttttt
     2881 gtagcgattg atatagtctt ggttgttcga acgtttctgt cctacatctg taagtaatgc
     2941 aatttccata atttttatcg ttgctaagca acttcctcct cttattctag gattttcgtc
     3001 taagttgacc gatgaaaaag ccatctgtct tatactgttc aggggttatc aacaagcagc
     3061 catccaccat aatatctgtt tgagggtgtt ctagtgtcac ctgttcaaaa ttgggatggt
     3121 tttgcagaaa ttcttgaata acctcttggt tttccttagt aataatcgta catgtgctat
     3181 aggttattat accaccaatt ttcaagcttt ggcaaacact gtccagtatc tgcaactgga
     3241 tagtctttag agaatcaaag tccatcgatg ccttgttgta acgaatatca ggcttacgtc
     3301 gaatgagtcc aatacctgaa catggggcat ccactaggat tttatcaaag gtatctggac
     3361 caaattcctc atgaacacga ctggcgtcca gacctttggt ctcaatctta tctgctaggc
     3421 ctaaacgacg tgcgttttct tcaatcaggg tcagtttatg ctcgtataaa tcaagagcaa
     3481 taactttacc acttgttaaa taacttgcca tgtgacaggt ttttccaccc ggagccgcac
     3541 aggcatccaa gatgatttca tctccttgaa tatccaaagt cggagctacc aattgactgg
     3601 tttcatcttg aatggtgata agtcctttct tgaaataatc tgtccccgca aagtgtccat
     3661 gggatttaac caacccaact ggtgataact gcgagtgttg ggcgcctagc tcctctgcca
     3721 atcgctccac ttgttgacca tctgtcacgc gtacgctggc cttattccga tcatgtaaac
     3781 tttggaaaat cttctctgca cgttcatcgc catattctgc aatcagggtt tggaccaacc
     3841 aaactggcac agaatactga acggataaac gtttgttctt tcttttaata tctgctggtt
     3901 tcggcaagga atcctgacta agcttacgca aaatggcatt aacaaatttg tcagttccag
     3961 gctttcgctt ggcaatatta actgcctcat tgacaactgc gtgggtaggc aatttatcca
     4021 aatataccaa ctggtagagg ctcaacatga ggagatagta gacccaagtg tccaactttt
     4081 ccctatcttc gataaaatgt gccaaatacc actctagggt aattttacga gaaaccgtcc
     4141 cataaaccaa ctcggtcgcc aagcccttgt cctgcgctga taaacaagaa gattctaggg
     4201 ccttattgag agcgatgttc gagtaagcac cttgatcaaa gacttgttcc aatacagata
     4261 aggctagact tcttgctgtt tcatgtttat tgatcaccaa attgatctcc tactgcaata
     4321 tctcgacctg caccatttaa aaagtctgca atggtcattt tgggcttacc agctggttgg
     4381 acagttttca gagaaagagc tccctgacct gtcgcaatga tcaattcttt cttgcttcga
     4441 gcaatcactt gaccgactgg tccttcacct cctacttcaa cagcttcttg aattttaaac
     4501 cgttcgcctt gccaataggt ataggcaact ggccacgggt acataccgcg aatgtgatta
     4561 aatagttgac gagctgtctt attccaatcc agtacctctt cttctggctg gatatttggt
     4621 gagaaggtta cctgttctgg attttgagcg actggtttca agtcaccagc aatataggct
     4681 ggtaaggatt gtaataataa atcccgacca acaacagcca acttttcaaa caaggtgccg
     4741 acgttgtcac tttcttcaat agcaatgcta tcgctggaaa tcatgtcccc ggcatccatt
     4801 tccttgacca tttccatgat ggttacgccg gcacgttcat caccgttaat tagagcatag
     4861 tgaatagggg caccgccacg gtatttagga agaagagaag catgaacatt gactgcaaag
     4921 tcaactgagt tcaataattt ggttggtagg aattgcccaa aagctgccgt cacaatccca
     4981 tctgctccta aattcatcag ctcatccatt tcttgacttc cagatagctt ctctggttga
     5041 tagactggta aattgtattc caaggctact tctttcacag gtgtcatttg gatgactttt
     5101 tttcgtccaa cagctcggtc tggctgggta acaacagcta agatttcata ctgatcatcc
     5161 gctaaaagac cttttaagac tgtcgcagaa aatgctggtg ttcccataaa aatcaacttt
     5221 gtcatctttg ctttctcatc tcctttactc tataaggttt ctactaattc tattatccct
     5281 taattatacc atttttgctt attttttcct taattcatgc ctatttaaag ccttttaacg
     5341 caaaaaaata aagccgatta ctcgacttta catcatattc tgcggttcat tgtcaataat
     5401 cagccgcaaa tcttgatttt ctctctcctg cgtccaatcc aaaatctgat tcaatacctc
     5461 ttccaaacgg tcttcatgcc ggtatttcaa gatgatctgg tagtggtaga gattatgggt
     5521 tctggcaata ggcttgggcg tcggtcccag gatttgaatt gcatctgtta agtgttgacg
     5581 gagaaaggct acagtttcat aggctttttt cacgacaaat tcttccgact tgtgcgaaaa
     5641 tgttaatcca actgtgaaat agtaaggcgg atagccaaga tttttccgaa tgcccatctc
     5701 ataacgatag aaaccttcat agttctgctc tttggcaaaa gcaatggcat aatgattggg
     5761 gttgtaggtc tgaatcagga cctccccttc cttatcagct cgaccagccc gaccagctac
     5821 ctgagtcagc aactggaagg ttcgctcaga agaccgaaaa tcaggcaaat tcagagccgt
     5881 atccgcattg agcacgccaa ctagggttac atttggaaaa tccaagccct tggcaatcat
     5941 ctgggttcct agaagaatat ccgcttcgcc tcgaccaaac cgttcgagca agtcctcatg
     6001 agcacctttt ttcttggtag tatccacatc catacgcaaa attcgagctt ctggcaagag
     6061 ctcctgcaat tcatcgtagg ccttttgcgt acccgtccca taataacgaa tagaacgact
     6121 ttgacagttt ggacaggtct gaggaatccc cttttgaaaa ccacaataat ggcaattcat
     6181 cgtttttgta tccatgtgaa gcgtcaggga aatatcacaa ttgggacact ggtcaacgct
     6241 gccgcaatca cgacacatga caaaagaaga ataaccacgc ctattcaaca taagaacgac
     6301 ctgttcctta cgagccaatt tttctcttat cttttcaatc agaacagggg taaaattact
     6361 agcctcctgc tgaccgatat aatcacggaa atccacaact tccacttctg gaatacgagc
     6421 caagggattg gccctctggt taagagtcag tcttccataa actcctcgac tagcccgagc
     6481 ccgtgtttca agactcggcg tagcagaccc caagaccagg gtcgctcgat tataatccgc
     6541 ccgcaacttt gccacatcac gcgcatggta gcgtggattg ctgtcctgct tgtaggtcgc
     6601 ctcatgctcc tcatcaatga tgataacacc caagtttgtc aatggtgcaa aaatagccga
     6661 acgagccccg acaaccacct gggcattccc cgcctcaatc ttccgccact catcgtactt
     6721 ctcaccatca gacaagcccg agtgcaaaat agcaacctgc tgaccaaaac gagaaataaa
     6781 acgattggtc atctgagggg tcaaggaaat ttcaggcacc agcatgatag ccgttttccc
     6841 cattttcaag accctatcaa taacctggag atagacttcc gtcttcccag aacctgtcac
     6901 tccttgcagt agaaatgtct gactttcctg accgatagag gccacaatct cacgaaccgc
     6961 aatcgcctgc tctggattca aatccaaggc ctgcgttttt tccaccctat caaaaactcc
     7021 ctgagtccgc gacacttcct cttcccagac ttctatatag cctttttctt ggaaatagcg
     7081 gagcgtatca gctgaatagt ccgattttag gtttgaaagg agctgggctt cagaatgttc
     7141 cagaagaaat tcccttaact gctgccgttt tttagcccga ttgctaatgt ctgcttctcg
     7201 taatttctcc agacaaactc ggtaccattt ttctgtcttg atttgctttt tatccttggc
     7261 cacatagtca accaagattt ttccagactg ggccagacgc ataattttcc cttgctcttt
     7321 cacgtctaag tcagaaaaac gaatctgctc cttatcaccg aacagactga cctgctctgc
     7381 catttccaag ccatgccccg gtctgagtaa tttgtcatag gtggaattga gcaaactagg
     7441 caacatggat tttaagagag taattttata ggagaagacc gacttcctca tctggtccgc
     7501 caaccaaaat tgctcttgat tgagaacagg actatagtcc aaaacctcgg caagctcttt
     7561 caaatcctgc aaatcaagtg catcatcttc atcaatcaag tcaactataa ttccttgaat
     7621 cagccgattg cccttgccaa agggaacatg gacacgtacg ccaaccataa gtccctcttc
     7681 caagtcagct ggtacttgat aggaataggc ctgatcggtc tgcatcaaag gaacgtctac
     7741 aataacctgt gctaacatac ttccttcctc ctttctgtca aaactttcat cattccgaaa
     7801 gtgaaaagaa acccggatgg caatcccaac cgagtcttgt ttctaaatct tttcgccttc
     7861 ttctttttct ttagcgattt gttctttgat tttcttctct tcttcttccg ccaaacgctt
     7921 cgcttcttcc gcacggcgac gaactgcctc acgttttgct tctggatctg ggtggataac
     7981 cacattgcca gattcaattt cttccaaggc acgaagggtt gattttactg aagtaaattc
     8041 ttgagttggc tttgcacctg cttccaattc atgggcacgt tttgcctcaa gaataaccaa
     8101 agaatactta gatggtacct tatccaacaa ggtatcaatt gacggtttca acatcataat
     8161 gcgattctct cttctttctt ttatcgttct gctatctgtt cacgaatcat ttcatcgtag
     8221 cgaccaatca ctcggtctac acggaaatgt tctgcttcga taatacgctt gacacgctca
     8281 gctgccaatg gaacttcatc attgacaacc gcataatcat actcacgcat caaggcaatc
     8341 tcttccttgg cacgttcgat acgttgagca ataacttcct cactatccgt tccgcgacca
     8401 atcaagcgat cttgcaactc ctccaagtca ggtggtgtca agaaaatgaa caccccatct
     8461 ggaacctttt tcttcacttg gagggccccc tgtacttcaa tttctaaaaa gacatctatc
     8521 cctttatcaa gcgtttgatt aacataagtc aaaggagttc catagtaatt tccaacgtac
     8581 tcagcatatt ccaacatctg accttggcga atcaagtctt caaattcctc acggctacgg
     8641 aagaaataat ccactccgtc tacttcacca ggtctttgtg ggcgtgtcgt catggacact
     8701 gaatattcaa atttgttatc cgaactttca aaaatttcct ttcgaaccgt tcccttccca
     8761 actccagacg ggccggaaaa tacgatgagt aagcctcgct ctttcatgat atctccttta
     8821 aaatctttca ttctagtgta acaaaaatcc ctaggaattt caactgattt taaatgagca
     8881 aactattttt tcaaacagaa ggaggagcta gtctagctcc ccctgactta cttagcgaca
     8941 tctgttgctc ttgtttcacg gataaccgtg atttttatat ttcctggata atccagatta
     9001 ttttcaattt tctcacgaac atcatgggcc aagatggtaa tctgatcatc agtgacctta
     9061 ttaggatgaa cgataatccg aatttcacga ccagcctgaa tagcatagga ttgtttaatc
     9121 ccttcaaaac tgttagcgat ttcttccaag tcttgcagac gtttgatgta ggcttccata
     9181 gattcacgac gcgaacctgg acgagcagcg ctcagagcat ctgctgcagc cacaataact
     9241 gcaatagtac ttgtcgcttc tacatcgcca tggtgactag caatcgcatt gataacaatt
     9301 ggattctctt tatatttctt agccaattct gtaccgattt caacgtggct tccatccacc
     9361 tcacggtcaa tagctttacc aacgtcatgt aggaaaccag ctcgccgtgc caaattcaca
     9421 ttctcgccca attcagcagc aagtacacct gctaatttag caacttcgat tgagtgtcga
     9481 agaacatttt gtccataaga ggtacggaaa tgcaaacgtc ccatgatttt aatcaagtct
     9541 ggatggaggt ttggtgcccc aacttcataa gcagcagctt ccccatactc acgaatacga
     9601 ttatccatct ctacacggta tttctcaacc aactcctcaa tacgagctgg atgaatacga
     9661 ccatcttgaa gcaaggtttc catggtcata cgagcaatct cgcgacgaat agggtcaaaa
     9721 cctgatagaa caaccacttc gggtgtatca tcaatgataa catcgatgcc tgtgagactt
     9781 tcaaaggtac gaatatttcg accctcacgt ccaataatcc gccccttcat cgcatcatcc
     9841 ggtaaatgaa ccgatgtaat cgtctgctca gccacatatt cacctgatat gcgttgcata
     9901 gcttgggcta acaagtcctt tgccatcttg tcagaacgtt cttttacttc acgctctgct
     9961 tccttgatac gagtcgcaat ttcatgcgtc agtttatcac gtgtatcggt aaggatgatt
    10021 tccttcgcct cttcttgact gagggcagcc actcgttcta actccaaagc tttttgttct
    10081 tcgagtttta caacttcttg ttcacgctca tcaatgtgct tagctttatc ggtcagactt
    10141 tgttcctttt gttccaaagt cttttccttg ttggtcaaat tatcgtcttt gcggtccaaa
    10201 ctggtcgccc gctctgtcaa gcgtgattcg atttgcttca actcttgacg ttctgactta
    10261 aattcttctg caatttcttc tcggtactta cgagcttctt ccttagcttc caagagtaat
    10321 tcttttttca aggtctggcg atcgcgctca gctgttttta gaataacctc agcttgctct
    10381 tctgctcgac cacgaacatt actagcttct tgttctgcgt ttaaaagtgt caattctgca
    10441 gtttcttttg cagatttcat cttcaaagaa atggcaaagt agccaattac taaaccaatg
    10501 agagcagaaa caagagtcac tactactgta atgatattca tatttctacc tcttttttat
    10561 aattcgattt tcacaaaatc tgtatctatt ttatcatatt tgaaacgatt tcacaat
//
LOCUS       DASGAC010000065        10605 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.065, whole genome shotgun sequence.
ACCESSION   DASGAC010000065 DASGAC010000000
VERSION     DASGAC010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10605
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.065"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..814)
                     /locus_tag="U1335_001223"
     CDS             complement(<1..814)
                     /locus_tag="U1335_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5231710.1"
                     /translation="MILSKRFKNRRKELGFTQKELAEGICEQSLISRVEKLGVAPTSD
                     ILFALSQRLQVSMDYFFDESVSDKAPDITVFKRLVDKALFTRSYDQLAYLVEAEKQKE
                     AVHSQESSEYLTYLACIVDFHHYHKEDTAIVRMEELSHRISKTSSFYLDVYSSLANFY
                     ALTSRDEDLESLYEEISEKLSHLDITDTDRFHKYIKIRYNHAHYLFKRKRQSQAIDEL
                     TDLIEILRDKKSCYLLADTLCLIANVGEGFLSKDEILSYYREAECLFKFFGPQ"
     gene            complement(951..1889)
                     /gene="msrB"
                     /locus_tag="U1335_001224"
     CDS             complement(951..1889)
                     /gene="msrB"
                     /locus_tag="U1335_001224"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HEM5231711.1"
                     /translation="MKEIYLAGGCFWGMEGYFSQIDGILDTSVGYANGQVETTNYQLL
                     KQTDHAETLYLAYDETRINLREILLYYFRVIDPFSVNQQGPDKGRQYRTGIYYIDKAD
                     LPTIEQVMMEQSQLFGGRPLAVEVEPLAHYIPAEDYHQDYLKKNPQGYCHIDLGQAKI
                     PLIDVADYHKPDQQVLKDSLTDLQYQVTQEAATERPFENEFWDSDQAGIYVDITTGEP
                     LFLSTDKFDSGCGWPSFTKPISKEVATYFQDKSHGMNRIEVRSRAGHAHLGHVFDDGP
                     RDKGGLRYCINSAALRFIPREEMEEAGYGLFLDLLK"
     gene            complement(1929..3458)
                     /locus_tag="U1335_001225"
     CDS             complement(1929..3458)
                     /locus_tag="U1335_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase"
                     /protein_id="HEM5231712.1"
                     /translation="MSTISYKPLNLYRQFQTAAREFPNVAIYFDQPYASFPELGLENT
                     YQTVFEAIQKRAAQFAAAGIGYGDKVVLYKSPAFDTYLLAVAVTALGAVPVMISYHLP
                     SSNLDVFAERLEKSFIVYDQETEEGVAGMTRTDLVTKVFLPQVLVQEAVAFEENLLPE
                     DVIQYMTHTSGTTGVPKLICHTAQTMGWRVAWQQTIFDKMTERGLLAFHISPVHSRYN
                     IGVSSAIGLGFPLYPLSSARKDDVERALALHRPSALETHPNNFVQWARLAKEKPEVFS
                     SIRYYHSTFDAINIGTLRAFLEASKEQDPVFMQVYGQSECGPMILRYHRLESLGTVNG
                     RDMGIGLEGYTEARITDVQGNPLPAGENGHIQFLSKGRAVTYYKEDARFQDNVYGAWW
                     DSGDYGCMTPEGTLLLKDRQVDLIEHIDSNLALEDLLLDKLDFLSEVVIIRDVNGAPQ
                     PIIALAEDAEMNWEAWWAMVADLPLLKEPILMAYDDIPRTATMKVQRLKMEAEMKEKN
                     L"
     gene            complement(3598..3912)
                     /gene="trxA"
                     /locus_tag="U1335_001226"
     CDS             complement(3598..3912)
                     /gene="trxA"
                     /locus_tag="U1335_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEM5231713.1"
                     /translation="MVQVITDANFEVETQEGVVLVDFWAPWCGPCRMQAPILEQLAGE
                     LDEDELRIYKMDVDENPNTARQFGIMSIPTLLFKKDGQVVKQVAGVHTKEQIKAILAE
                     IG"
     gene            complement(4455..5309)
                     /locus_tag="U1335_001227"
     CDS             complement(4455..5309)
                     /locus_tag="U1335_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM5231714.1"
                     /translation="MQTVTLHNGVEMPTVGFGVFQIPDPENCQQVVEEAIRTGYRLID
                     TAQAYGNEEAVGHAIRNAGVPREELFITTKLWISDMSYQEAKEAFAASMEKLGLDYLD
                     LYLLHQPVGDIFGAWRALEELYHEGKIRAIGVSNFKPDQIANLSLFNTVKPMVNQIEL
                     HVFHQKPEERAYLASKGIQVQSWGAFAEGKFDVFTNPVLTAIASKYGKTTAQVMLRFQ
                     LQSGIVSLSKSANPERVRQNFDIFDFGLMEEDMVAIQALNTDTTVFADHHQAQTIEAL
                     AGYVGKTF"
     gene            complement(5318..5698)
                     /locus_tag="U1335_001228"
     CDS             complement(5318..5698)
                     /locus_tag="U1335_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM5231715.1"
                     /translation="MKTMKEVAEELGLSHDTIRYYERIGLLQVPRDKNGYRQFDQQAI
                     DWLFLVKMLRKSGMSIESLVDYVDLVRQGDRTIAARKAILQEQEERLKEQIAQQEAVL
                     EMLSHKVATYDSQLLRFEQERLDK"
     gene            complement(5793..6446)
                     /locus_tag="U1335_001229"
     CDS             complement(5793..6446)
                     /locus_tag="U1335_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5231716.1"
                     /translation="MIIRKYQTSDEKGWVYCKALSYLFSPFFDDRETEKPDLMTDVYD
                     HRVEWVAEVNEQIVGLIDIDIYTEECSRSYIYAPSKRTAYFTNLAVHPDFQGQGIAQA
                     LFEKAEQELREQGVEKLAIFTREDDAANHLYQKWGGEVVCSDYLVVGAPQDVPTFRFG
                     IDLERGRLSFSDKEGQPAPYYLREGVYVVSEEAGLELFDIEDVYRELTYVVDLTEKS"
     gene            complement(6470..8803)
                     /locus_tag="U1335_001230"
     CDS             complement(6470..8803)
                     /locus_tag="U1335_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HEM5231717.1"
                     /translation="MNNKIIETLEFHKVRQKIEPYLLTEQGFEELRQLEPMVEVHRIQ
                     QAFDELTDIAQIFVENPYFSMSATSDIGPAMRRLELDTDLNISELLAVKRVLEVSKTL
                     LDFYGNLENVSLSQLNKLFEKIELFPHLQGSLQSINDAGFVEDFASEKLARIRRKIRE
                     AEDQVRQVMQDILKTKGDMLSDSILASRNGRNVLPVKNTYRNKIAGVVHDISASGSTV
                     YIEPRAVVTLNEEISHLRAEERHELNRILQELSDMLRPHSGVIRNNAWLIGHIDFVRA
                     KHLFARAHQAVVPKLSEKQDIALLNVRHPLIAEPVPNDLYFGSQLTAIVITGPNTGGK
                     TIMLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHT
                     VQILAEADQDSLILFDELGAGTDPQEGASLAMAILDDLRLRGIKTMATTHYPELKAYG
                     IETSGIENASMEFDTNSLRPTYKFMQGVPGRSNAFEIARRLGLSDIIIQSAQSWTDTD
                     SDVNRIIEKLESQTVESRQRLDKIRDVEQENYKMNRALRKLYDELNRERENELNKARL
                     EAKEIVDMALAESEDILKNLHAAASLKPHQIIEAKAELKKLAPEVVDLSKNKVLKKAK
                     IQREAKVGDDIIVTAYGQRGTLTNQLKDGRWEAQVGLIKMTLAKDEFELVKAEKAEQP
                     KKRQVHTVKRANVRGPKARLDLRGKRYEEAMMELDEFIDQALLNNLAQVDIVHGIGTG
                     VIREGVTKYLRRNKQVKEFGYAPQNAGGSGCTIVTFK"
     gene            complement(8966..9514)
                     /locus_tag="U1335_001231"
     CDS             complement(8966..9514)
                     /locus_tag="U1335_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEM5231718.1"
                     /translation="MISLVIILILAWSFYIGYSRGLVLQAFYSMGSIIALAVATATYK
                     KLASFLYLWVPFANATQGSSNYYFDEKYLFDLDMVFYAGLAFLLIYVLVYAIVRFIGI
                     FVHLLEAFNPDTKTTNLISGALAVLVTFISLQIVMVLLSTIPLAMIQDKLHSSLLANI
                     MIQYTPFTSSFLKSLWLSNIAG"
     gene            complement(9511..9822)
                     /locus_tag="U1335_001232"
     CDS             complement(9511..9822)
                     /locus_tag="U1335_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231719.1"
                     /translation="MANLNRYKFTFGEKQLTLTTEHDNLFMEEIERIAQEKYQAIKEK
                     MPTADPETLALLLAINALSVQLTREMAFEQKEQELASVKEKVLKKNVTLIDLDELEDK
                     V"
     gene            complement(9880..10593)
                     /gene="treR"
                     /locus_tag="U1335_001233"
     CDS             complement(9880..10593)
                     /gene="treR"
                     /locus_tag="U1335_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose operon repressor"
                     /protein_id="HEM5231720.1"
                     /translation="MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVR
                     KALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLTSYQELTNVLQLSTKTDVVSLDM
                     ITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
                     EYLENKLGLDIAYAQKEITVEPTSREERDLMQIQDDYLVLIKSRVYLGDTRQFQYTES
                     KHKIDKFRFVDFARRKHSL"
BASE COUNT         2963 a         2451 c         2107 g         3084 t
ORIGIN      
        1 tttgcggacc aaaaaatttg aatagacatt ccgcttctct atagtaggag agaatttcat
       61 cctttgatag aaatccctct ccgacatttg cgattaaaca aagcgtatca gccaaaagat
      121 aacaactctt cttgtctcgc aagatttcga ttaggtctgt caattcatca attgcctgtg
      181 actgcctctt ccttttaaaa agatagtgag cgtgattgta gcgaatcttg atatacttat
      241 gaaaacgatc tgtatctgtt atatccaaat gactaagctt ttctgaaatc tcctcataca
      301 aactttctag atcctcatct cgggaagtca aggcataaaa attagccaaa ctactgtata
      361 catccagata aaaactagat gtcttactga ttcgatgact aagttcttcc atacgtacaa
      421 ttgcagtatc ttccttatga taatgatgga agtccactat acaagccaga taagttaaat
      481 attcactgct ttcctgcgaa tgaacagctt ctttctgctt ctctgcctct acaagataag
      541 ccagttgatc ataggaacga gtgaacagag ctttgtccac caatcgttta aataccgtaa
      601 tatcaggtgc tttatctgat acactttcat caaaaaaata gtccatagac acctgtaagc
      661 gttgtgataa ggcaaataat atatccgatg taggagcaac tcctaatttt tcaactcgac
      721 taatcaaact ctgctcacaa attccctctg caagttcctt ttgagtaaag ccaagttcct
      781 ttcttctatt tttaaaacgt ttactaagaa tcattttcat cacctttcta tatatttaca
      841 tcttaaataa aatctctata taagtcattt tatcaaaatt atcttttcta acatactatt
      901 tcgacacaaa aagcctattc tttgcgaata gactttctac gttcctaaat ttatttaagc
      961 aaatccaaaa acaggccata tcctgcttct tccatctcct ctctcggtat gaagcgaagg
     1021 gctgctgagt tgatacagta acgtaatcca cccttgtcac gcggtccgtc gtcaaagaca
     1081 tgaccaagat gagcatggcc ggcccgactg cggacttcaa tacgattcat accgtgagac
     1141 ttatcttgga aataagtcgc aacttccttg ctgattggtt tggtaaagga gggccagcca
     1201 cagcctgagt cgaatttgtc tgttgagaga aagaggggct cgccagtcgt aatatcgacg
     1261 tagatgccag cttggtcact atcccaaaat tcattttcga agggtctttc cgtcgcagct
     1321 tcttgagtga cttgatactg gaggtcggtc aagctgtctt ttaagacttg ttggtctggc
     1381 ttgtggtagt ctgcaacatc aatcagaggg atttttgcct gcccaagatc gatatggcag
     1441 tacccttggg gatttttctt gagataatcc tgatggtagt cttcagcggg gatgtaatgt
     1501 gcgagtggct ccacttcaac ggctaggggg cgtccgccaa agagctgaga ctgctccatc
     1561 atgacctgct cgatggtcgg caaatcagcc ttatctatgt aatagatacc agtccgatac
     1621 tggcgcccct tgtctggccc ctgctgattg acagagaagg gatcaatgac gcggaaatag
     1681 tagaggagaa tttcccgcaa attgatacga gtctcatcat aggctagata gagcgtctct
     1741 gcgtggtctg tttgtttgag gagttgataa ttggtcgtct ccacctgtcc attggcatag
     1801 ccaacgctgg tgtcaagaat accatcgatc tgggaaaagt agccttccat tccccagaaa
     1861 caaccgcctg ctagataaat ttctttcatg tgaactcctt cttatctgca agcgtggttt
     1921 cgtcactctt acagattttt ttctttcatt tctgcttcca ttttgaggcg ttgaaccttc
     1981 atggtcgcag tacgtggaat gtcgtcataa gccatcaaga taggttcttt caatagtggt
     2041 aggtctgcaa ccatggccca ccaagcttcc caattcatct cagcatcttc tgccaaagcg
     2101 ataatcggct gcggtgcacc attgacatcg cggataatca caacttctga taaaaagtcc
     2161 aatttatcca gcaataaatc ttccaaggca aggttgctgt cgatgtgctc aatgaggtca
     2221 acctgacggt cttttagaag aagcgtcccc tctggagtca tacagccgta gtcaccacta
     2281 tcccaccaag caccgtacac attatcttgg aagcgggcat cttctttgta gtaagtcaca
     2341 gcacggcctt ttgacaggaa ctggatatgg ccgttttctc cagctgggag aggattccct
     2401 tggacatctg tgatgcgtgc ctcagtgtaa ccttccaaac caatccccat atcacgtccg
     2461 ttaactgtcc ctagactttc caagcgatgg taacgtaaaa tcattggacc acattcactt
     2521 tgaccataaa cctgcataaa gactggatct tgctctttag aagcctccaa gaaggcgcga
     2581 agcgtaccaa tattgatagc atcaaaggtt gaatggtaat aacgaatgct actaaagacc
     2641 tctggttttt ccttggccaa tcttgcccat tgaacaaagt tattcggatg ggtttccaga
     2701 gcgcttggac ggtgaagagc aagcgcccgt tcaacatcat cttttcttgc agaagaaagc
     2761 gggtagaggg ggaatcctag cccaatcgcc gacgacacgc cgatattata gcgtgaatga
     2821 acaggggaga tatggaaggc cagcaagcct ctctccgtca tcttgtcaaa aatagtctgt
     2881 tgccaagcta ctcgccagcc catggtctgt gctgtgtggc agattagttt tggaacacct
     2941 gtcgttcctg aagtatgggt catgtattga atgacatctt ctggcaggag attttcttca
     3001 aaagcaactg cttcttgcac taggacttga ggtaaaaata cctttgtgac caggtcagtt
     3061 cgagtcattc ctgctacacc ttcttccgtt tcttggtcgt agacaatgaa agacttttcc
     3121 aatcgctccg caaacacatc taaattcgaa gatggcaaat ggtaggaaat cataacagga
     3181 acagcaccca atgccgttac tgctactgct aacaaatagg tgtcgaaagc tgggctctta
     3241 tacagaacca ccttgtcccc atagccaata cctgccgctg caaattgggc ggctcttttt
     3301 tgaatggcct caaaaacggt ttgataggta ttttccaatc ctaattcggg gaaggatgcg
     3361 tagggttggt caaaataaat ggcaacattt ggaaactctc gagctgctgt ttgaaactga
     3421 cgatagagat ttaatggttt gtaactaata gttgacatag ctaacctttc taaactgaca
     3481 ataataaggt tattatatca tcttgtgtca tttttcacaa tcttatgttt taaaaatact
     3541 tacgattgtg aaaaaacaag cagtgaaact gagctcacta cttgttttca ttttcactta
     3601 accaatctct gccaagatag ctttgatttg ctccttagta tgaacaccag caacttgttt
     3661 tacaacttgt ccatcttttt tgaacaaaag agttgggata gacatgatgc caaactgacg
     3721 agctgtattt ggattctcat ccacatccat cttgtagatg cgcaattcat cttcatccaa
     3781 ttcaccagct aattgctcca aaattggtgc ctgcatgcgg catggaccac accaaggtgc
     3841 ccaaaagtca acaaggacta cgccttcttg tgtttcaact tcaaagtttg catctgtaat
     3901 aacttgaacc atgattttct ccgtttctgt ttttggtact atcattctac accaaatgaa
     3961 gagagaatgc gaatatttgc tacgggatga agcatgagat aaacgtacct ataagaattt
     4021 cagttgtaaa aaaatgggta tagctaaact agaccgcagg aggacgaggg ggaactgaga
     4081 aattgttttg cttataaagt ccacttgtag taacgagaca gggtgacgga gtaggtgcta
     4141 cggaagagaa atgagataga catgcttaaa caattgtgat ttgaaagtat gttgatcatt
     4201 ctaaactaga ccgcagggtg acaagactgg actagaaaat ggtttgttct tgttccattt
     4261 agctgtaaaa gcaacctatc agattttata atcgaatgaa tttgctttca gacaagggcc
     4321 tgaggtacag cttactagaa cagtataaag gctgttctag gttagaaata agacctgaga
     4381 agctagtcac tttcgtagag tacggcaagc cgaaagtgac aatggattaa agttcattca
     4441 aacgtccata tcccttaaaa tgtcttgcca acatagcctg ctaaggcttc aatggtttgg
     4501 gcttggtggt gatcagcaaa gactgtcgta tctgtgttta gagcttggat agccaccatg
     4561 tcttcttcca tcagtccaaa gtcaaagatg tcaaaattct gacggacacg ctctggattg
     4621 gcagatttcg ataaggaaac aatgcctgac tggagttgga agcggagcat gacctgagca
     4681 gttgtttttc catatttgct agcaatagct gtcaaaacag gattggtaaa aacatcaaat
     4741 ttcccttctg caaaggctcc ccaactctga acttgaattc ccttactagc cagataggct
     4801 cgctcttctg gtttttggtg gaacacatgt agttcaatct ggttgaccat cggcttcaca
     4861 gtattaaaaa gagataggtt agcaatctgg tctggtttaa aattggacac accaatggca
     4921 cggatctttc cctcatgata gagttcctcc aaagctcgcc aagctccaaa gatatcacct
     4981 actggctgat ggagtagata gagatccaga tagtccaaac ctaacttctc catagaggcc
     5041 gcgaaagctt ctttagcttc ttggtagctc atatctgaaa tccacaattt agttgtaata
     5101 aatagttctt ctcgcggcac accagcattg cgaatggcat gaccaactgc ttcctcattt
     5161 ccataagcct gagctgtgtc aatcaggcga taacctgtcc gaatagcttc ttcaacaacc
     5221 tgctggcaat tttctggatc tgggatttgg aagaccccaa atccaactgt aggcatctca
     5281 actccattat gtagtgtaac tgtctgcatc tttattctca tttgtctaat cgttcctgtt
     5341 caaagcgtaa caactgacta tcataggtcg ctaccttatg actcagcatc tccaacacgg
     5401 cttcttgttg ggctatttgc tccttcaatc gctcttcctg ctcctgtaaa atagcctttc
     5461 gcgcagcaat agtacgatca ccctgtcgca caaggtcaac ataatccacc aaactttcaa
     5521 tagacatccc agacttacga agcattttga ccaagaagag ccagtcaatc gcctgttggt
     5581 caaattgccg gtagccgttt ttgtctcgcg gcacctgtaa aagcccgatt cgttcataat
     5641 agcgaatagt atcatgggat aaacccaatt cctccgccac ttctttcatc gttttcaaaa
     5701 tatcacttcc tttcaccagc tgatgataat atgattataa actatggagt ccactccata
     5761 gcaagcaaaa aaagaaaaaa gttgaaaatg tttcaacttt tttctgttaa atccaccaca
     5821 taggttaatt ctcggtaaac atcttctata tcaaaaagtt ccaagccagc ttcttcactg
     5881 actacataaa caccttctct caaatagtag ggtgctggct gaccttcctt atctgaaaag
     5941 gacaatctgc ctcgctctaa atcaattcca aagcggaagg ttggaacatc ttgtggcgct
     6001 ccgaccacta gataatccga acagactacc tcaccacccc atttctgata taaatggttg
     6061 gctgcgtcat cctcacgagt aaagatggct agtttctcta caccttgttc tctcaactcc
     6121 tgctctgctt tttcaaaaag cgcctgggca atgccctgcc cttgaaaatc agggtggact
     6181 gctaggttag taaaataagc tgttcgctta cttggtgcgt aaatataaga ccggctgcac
     6241 tcttctgtgt aaatatcgat atcgattaga ccaacaattt gttcatttac ttcagccacc
     6301 cattccacac gatgatcata aacatctgtc attaggtcgg gcttctctgt ttctctatca
     6361 tcaaagaatg gggagaagag gtagctgagt gccttacagt aaacccagcc tttttcatca
     6421 ctggtttgat attttctgat aatcataaga atctcccatc ggttgattgc tatttaaacg
     6481 tcacaatagt acagccagag ccacctgcat tttgtggggc atagccgaat tccttgacct
     6541 gcttgttgcg acggaggtac ttggtcacgc cttctcggat aactccagta ccaataccgt
     6601 ggacaatgtc tacttgtgcc agattgttga gaagggcctg atcgataaat tcatccagct
     6661 ccatcatagc ctcttcgtag cgtttaccac ggagatctaa gcgggctttt ggacctcgta
     6721 cattggcacg tttgactgtg tgaacctggc gtttcttagg ctgctctgcc ttctccgcct
     6781 tgactaactc aaactcatcc ttggccaagg tcatcttaat caagccaacc tgagcttccc
     6841 aacgcccgtc cttgagctga ttggtcaagg tcccgcgttg tccataagct gtaacgataa
     6901 tgtcatcgcc caccttggct tccctctgaa ttttagcttt cttcagcacc ttgtttttag
     6961 acagatccac cacttcaggc gccaactttt tcagctctgc cttggcttcg ataatctggt
     7021 ggggcttaag actagctgca gcatggagat ttttcagaat atcctcgctt tctgccaatg
     7081 ccatatctac aatttccttg gcttccaagc gtgccttgtt gagctcattt tctcgctcac
     7141 gattgagttc gtcatagagc ttgcggaggg ctcggttcat cttgtaattt tcttgctcca
     7201 catcacgaat cttatccaga cgctgacgac tttcaaccgt ctgactttcc aatttctcga
     7261 taatgcggtt cacatcgcta tctgtatccg tccaagattg ggctgactgg ataataatat
     7321 cagatagacc aagacggcgg gcaatttcaa aggcattgga gcgaccagga acaccctgca
     7381 taaacttata agttggtcgt agactattgg tatcaaattc catgctggca ttttcaatac
     7441 cagaggtttc tatcccgtag gccttgagct ccggatagtg ggtggttgcc atagtcttga
     7501 tgccccgcag gcgaaggtca tctaagatgg ccatagccaa agatgcaccc tcctgcggat
     7561 cggtccccgc ccccaactca tcaaataaaa tcagggaatc ttgatctgcc tccgctaaaa
     7621 tctgtaccgt gtgggtcatg tggctggaga aggtggataa actctgctca atcgactgtt
     7681 catccccaat gtccgcaaaa atttctttga agatcgctac ccgactgccc ttgtccgcca
     7741 agattggcaa gccagactgg gccatcagat gggtcagtcc caaggtcttg agcataatag
     7801 tcttaccacc tgtgttggga cctgttatca cgatagccgt caactgacta ccgaaataga
     7861 ggtcgtttgg cacaggctca gcaatcagcg gatggcgaac gttgagaagg gcaatatcct
     7921 gcttctcaga tagtttgggt acaactgctt gatgagcacg cgcaaagaga tgcttagcac
     7981 gaacaaaatc aatatgaccg ataagccagg cgttgttacg aatcacacca ctatgcggac
     8041 ggagcatatc cgacaattcc tgcaagatac ggttaagctc atggcgttct tctgcacgta
     8101 ggtgactgat ttcttcgttc agggtcacca ctgcccgcgg ctcaatataa acggtcgaac
     8161 cagaagccga aatatcatgg acaacccctg caattttatt gcgataggta tttttgacag
     8221 gaaggacatt gcgtccatta cggcttgcca aaatgctatc ggacagcatg tcacccttgg
     8281 tcttcaaaat atcctgcatg acctgacgaa cttgatcttc agcttcacgg atttttcttc
     8341 gaatacgggc tagtttttca gaggcaaaat cctctacaaa accagcgtcg ttgatggact
     8401 ggagggatcc ttgtagatgt ggaaaaagct caatcttctc aaagagttta ttcagctggc
     8461 taagactgac attttccaaa ttcccataaa aatccaagag agttttggac acttccaaga
     8521 ctcgcttgac tgccaataat tctgagatat tgaggtctgt atccaattcc aaacgacgca
     8581 tggctggacc aatgtcactc gtagcagaca tgctgaaata gggattttcc acaaaaatct
     8641 gcgctatatc tgtcaactcg tcaaaggcct gttggatacg gtggacttcc accatgggct
     8701 ccaactgtcg caattcttca aagccctgtt ccgtcaagag atagggctca attttctgtc
     8761 taaccttgtg aaattcaagg gtttcaataa tcttattatt catatgttcc taacttagtc
     8821 ttttccttag ctttatctca ttatcaaaac aataaaagat aaaaatatag tctttcccac
     8881 tcccactcat caaatcaagt caacaacgtc tgattttgat tttcgaagag tattataaat
     8941 gacgataaaa aggataaggt ctcccttacc ctgctatatt actcaaccag agagatttta
     9001 aaaagctact agtgaatggt gtgtactgaa tcatgatgtt ggcaagaaga ctactgtgca
     9061 atttatcttg aatcatcgct aacggaatag ttgatagcaa gaccatgaca atctgaagag
     9121 aaataaaagt caccaagaca gccaaggcac cgcttatgag attggtcgtt tttgtatcag
     9181 gattaaaagc ctctaataga tggacaaata ttcctatgaa acgcacaata gcataaacca
     9241 agacgtatat caaaagaaag gccaatcccg cataaaatac catatctagg tcaaagagat
     9301 atttctcatc aaaataatag ttggagctcc cctgagtagc attggcaaat ggcacccaga
     9361 gataaaggaa ggatgccaat tttttataag tagccgttgc aaccgccaga gcaataatac
     9421 ttcccatgct ataaaacgcc tgtagaacta gaccacgact gtagccaatg tagaaactcc
     9481 atgccaaaat gagaataatt actaatgaaa tcataccttg tcctcaagct catctaagtc
     9541 aatcaaggtc acattctttt tcaagacctt ttctttgacg cttgcaagtt cttgttcctt
     9601 ttgttcaaat gccatctcgc gcgttagttg aacggataga gcattgattg ccaacaaaag
     9661 cgcgagggtt tcagggtccg ccgtcggcat cttttctttg atggcttggt atttttcctg
     9721 tgcaatacgc tcaatctctt ccatgaataa attatcatgc tcagttgtca aggttaattg
     9781 cttctcgcca aatgtaaatt tatatcgatt taagtttgcc atatcttacc tcttcttcta
     9841 tctattatag cgtaaaaaac ttgatttggc taatctctcc tataaagaat gctttctacg
     9901 agcaaaatct acaaagcgga atttatcaat cttgtgctta ctttcagtgt attgaaattg
     9961 tcgcgtatct cctaagtaga ccctggattt tatcaacacc agataatcat cctgaatctg
    10021 catcaaatct cgttcttctc ggctggtcgg ctctaccgta atctcttttt gtgcataagc
    10081 aatatcaagg cctaacttat tttctaggta ttcgtagatg gatttttcag caatagcagt
    10141 tgtcaactct ggcacgacat cgacagcaag ataatctgta tccacaacgg agaccttacc
    10201 gtcaatcgaa cgtgtacgga caactttcca caccttgcta tacggctcaa agcctgtcaa
    10261 atgcgaaagg ctactattaa cggtaatcat atctaagctg acaacatctg tcttggtaga
    10321 aagctggaga acatttgtca attcctgata ggaagttaaa cctgaaactg ggaaattgag
    10381 aatttcttgc ttaaggacca ttgaaccacg cccttgcact ttttgaatca aacctccctc
    10441 agtcaaaatc gccaacgcct tacgaaccgt atcacgacta acaccataga tttcctgaag
    10501 ctgctgttct gtcggtaggg agctttctgc cggataaaca tttgtccgta ttttttcttt
    10561 taagtcatta taaatttctt ggtatttttt catcatttcc tcgca
//
LOCUS       DASGAC010000066        10357 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.066, whole genome shotgun sequence.
ACCESSION   DASGAC010000066 DASGAC010000000
VERSION     DASGAC010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10357)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10357)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10357
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.066"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(23..766)
                     /locus_tag="U1335_001234"
     CDS             complement(23..766)
                     /locus_tag="U1335_001234"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013539.1,HMM:NF013577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM5231721.1"
                     /translation="MGFFSHLQANQDLLNEQELRHLNYMMDKENFSLLKNSTLKELAD
                     RLYVSPNTIVRMAKKLDYRGYTELKLAIETEHNKSSFLKKGNRLKLIDQMNRTDELLS
                     SNTVKEVLRLILAANHIYFFSCGPSKFPCEEMKEKLRILGFESSLYYEPHVMRQRTKK
                     LKENDLVFVVSLSGETKTPLDAARLVKLTKAKMISITGFSQNSISQIADVNMYTFYDK
                     LTYTDMDVSSRLGIYYILNYIFEELAPLC"
     gene            complement(781..1314)
                     /locus_tag="U1335_001235"
     CDS             complement(781..1314)
                     /locus_tag="U1335_001235"
                     /inference="COORDINATES: protein motif:HMM:NF017542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HEM5231722.1"
                     /translation="MNDFQVTLADDEKKKPAKSKPFEHSKVDMIELPRSNALTEKTVR
                     VVSHKVFSSKAFDAKFYDVLAALLGYKEKGSAEVLEYLSGNVLPGNLVVVTLRELSTK
                     FNVSITWVARIFDRLQIDGFVAKKSQGIWTVSDEYLKLTKKPTNRTQFVIDIEEVPEQ
                     IEMFEKDGSINIDNDDK"
     gene            2365..3366
                     /locus_tag="U1335_001236"
     CDS             2365..3366
                     /locus_tag="U1335_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018378211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231723.1"
                     /translation="MSKADQRRAKRARAKARKQSRKDELKTSAEARQKHVQKIGQDII
                     TEKFRAGKGKSRHEGKKEGDNFKYITSEKAFRDISACWRRFSAFVAERSDGTDIETLD
                     DILKYADEYIAFKMSEGRSAWTLTTYKAHLGKVFNLPTTEFIQTPPRERKNAKRSRRE
                     TENDRHISKKKLDFFERVGGALGLRRQELEKIKGTALAPRRAKNGLWYIHVTEGTKAG
                     KERWSPILAENEQEEAEIIEYFKKAGSDYVFSGKHGTHRVPKKLDQHVNRAGYAKRMY
                     LLYAKDPNTLKNHQKTRLRKELRGYVLDKAAEQKVSDALGHNRDNEYRKSYVYELLE"
     gene            3835..4653
                     /locus_tag="U1335_001237"
     CDS             3835..4653
                     /locus_tag="U1335_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000715517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="HEM5231724.1"
                     /translation="MQRRKSSKVLDELISRSDYLVVQSNDLAKAFGNLKAFEHKILDY
                     CFSFVQKDSVPNELFTVEIAVLLRFLGLSNSGTNYKRVVEAFKSLNQSTALYLPITKK
                     DGTRGIRMTQLFSFIDYFETGRVEFRFSEYAQPYIFDLKKHFYSFHLRELANVKGKYA
                     LILLKLWEAHRFGDRKLTIINGTLDEWQNWFLGEEKRIPAGRFMQNVLTRAVEEIEEK
                     FPVQIVVDVLKRGRNVVGYEIEITDNKRQSKADFFREVADFEAGKTDVLPGWQD"
     gene            complement(4748..5008)
                     /locus_tag="U1335_001238"
     CDS             complement(4748..5008)
                     /locus_tag="U1335_001238"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231725.1"
                     /translation="MPPHLLGWSKTAHIERAERVLSYLDRHILAVERDELVQQGKFEN
                     VGRPKKDHIVKDWRAKNPFGTKADCQRETKLSRNTIRIYWDR"
     gene            5924..6346
                     /locus_tag="U1335_001239"
     CDS             5924..6346
                     /locus_tag="U1335_001239"
                     /inference="COORDINATES: protein motif:HMM:NF020265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HEM5231726.1"
                     /translation="MAVQLNIRLEPEQRDKLTKLAKEAGMTLTAYILDKTLYSASNHI
                     ADKLADDSTQLARYEERIEMLTKQNIYIEEQKTKEIERLENTIAQLHEQINRKDEQIE
                     REQEQAKNQAQAILTLTLKNETLRLETESSKKSWWKFW"
     gene            6348..6671
                     /locus_tag="U1335_001240"
                     /pseudo
     CDS             6348..6671
                     /locus_tag="U1335_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_064305258.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS6-like element IS1216 family transposase"
     gene            complement(6781..7269)
                     /locus_tag="U1335_001241"
     CDS             complement(6781..7269)
                     /locus_tag="U1335_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010742394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM5231727.1"
                     /translation="MNLFKKFKKKANQLTLHSVNTGVFVPITEVKDDVFSQKMLGDGF
                     AIRPNIKEVYSPISGIVTSVFPTKHAIGLKSETGVEVLVHMGIDTVELQGKPFEVFVK
                     EGDLVVPSTKIADIDLAMLNVSNKQSDILVIITSGEDIEFQMASSMNISANDLVGKVI
                     LK"
     gene            complement(7296..8861)
                     /locus_tag="U1335_001242"
     CDS             complement(7296..8861)
                     /locus_tag="U1335_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010742395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HEM5231728.1"
                     /translation="MTKEKILESFQKLGKVLMAPVLILPISGILVGVGSAFSNPNLIK
                     SVPFLGSTFFVYLFSLMKDAGNVVNNNIPVIFAISIAYGFAKSEKGTSALASFLGYMT
                     LNTVMGSFLVLKGTIDPDNLLTGQRSILGVLTLDTGVFGGIIIGLLVSYLHNKYYKIE
                     LPSVISLFNGTRFIPAITIIVSSFVGLIMAFVFPPIQNALGAMSEFIVSTGSLGSFVY
                     GTSERLLLPFGLHHFIYLPFFFTSLGGVEEIGGQAVEGAVNIYNAILNTPGAKFDISV
                     SRFLMNGKVIFAMFGLPGAALAMYKTALPANKKKVASLMIAAVIPCALMGISEPLEYS
                     FLFVAPMLFGIHAILSGVAYLLTYIVSFNVVGSASFGGPFMSLIFNGIMGADKGSNWL
                     WVIPLGALYFCLYYFIFKFAIIKWNLKTPGREVEDVVISGTVENTTDSKELLEAIIVA
                     VGGKDNIEKVDACFTRLRITLKDPSKVESSTHFTEKLGANGVVNVPSGIQIIYGNKAA
                     VYKTEMRELLEME"
     gene            complement(8935..10260)
                     /locus_tag="U1335_001243"
     CDS             complement(8935..10260)
                     /locus_tag="U1335_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010742396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-alpha-glucosidase"
                     /protein_id="HEM5231729.1"
                     /translation="MKKKNNIVIVGGGSTWSPGILKALTKHQDIFPFDKITLYDIDEK
                     RQEVIGKFGEILFREETPDIEFIYTTDKEEAFRDVDFVFCQMRTGGYPMREKDEKIPL
                     SMGLIGQETCGPGGFAYGMRSIRDMIELVEDVRKLSPEAWILNYTNPAAIVAHALNMV
                     FPDDKRILNICDQPVNLLRSFGRLINRDFNEFEPTYFGLNHFGWFTHVYDKEGNDLLP
                     EIKEYTIKNGFLPVDAEQRDQSWLDTYAMVEDMVKDFPDYLPNTYLQYYLYPEYKLSK
                     LDPNYTRANEVMDGREKRVFEECERIAQVGTAKDSHIVHNDAHGDMIVEVAASIYGNL
                     RKTFIVIVPNNGIVSNLPNDLMIEVAASLGANGPQPYAVGEIGTFYKGLIEGQYAYEK
                     LTCEAYLEKSYTKALQALTLNRTIVDAKKARKILDALIEANVDYWPELK"
BASE COUNT         3515 a         1958 c         1799 g         3085 t
ORIGIN      
        1 aaaaaaaaca ctgttgtgtt attcaacaca acggcgctaa ttcttcaaaa atataattta
       61 atatataata aatacctaat ctagaagaaa catccatatc ggtgtaagtt aatttgtcat
      121 aaaaagtata catattaaca tcagctatct gagaaattga attttgagaa aatcctgtaa
      181 tcgaaatcat ctttgcctta gtcagtttaa ctaaacgagc cgcatctaaa ggggttttag
      241 tctcaccact tagacttact acaaatacta aatcattttc tttcagtttt ttagttcgtt
      301 gtctcatcac atgaggctca taataaagag acgactcaaa acctaatatt cttaatttct
      361 ctttcatttc ctcgcaagga aacttagaag gtccacaact gaaaaagtaa atatgattag
      421 cagctaaaat taatcgtaat acttctttta ctgtgttcga actcaataac tcatctgttc
      481 gattcatttg atcaataagt tttagccggt tccctttttt caaaaaacta ctcttattat
      541 gttccgtttc aatagctaat tttaattcag tatacccacg atagtccaat tttttagcca
      601 ttctgacaat cgtattcggc gagacataga gtctgtctgc tagttctttc aatgtactat
      661 tctttaataa agaaaaattt tctttatcca tcatatagtt taaatgtctt aactcttgtt
      721 catttaatag atcctgatta gcttgaagat gactaaaaaa tcccatgata aaatctctcc
      781 ttacttgtca tcattgtcga tattgattga accgtctttt tcgaacattt cgatttgttc
      841 cggcacttct tcaatatcaa taacgaattg tgtgcgattc gttggtttct tggttagttt
      901 caagtattca tccgaaactg tccaaattcc ttgacttttc tttgctacaa agccgtcaat
      961 ttgcaagcgg tcaaagatac gggcaaccca ggttattgaa acgttgaatt tggttgataa
     1021 ttcgcgtagc gttactacta ccaaattgcc tggcaagacg ttgcctgaaa gatactccag
     1081 cacttctgca gaccccttct ctttgtaacc taacaaggct gcaagcacgt catagaattt
     1141 agcgtcaaat gcttttgatg aaaaaacctt atgcgaaaca acgcgaacag tcttttctgt
     1201 caatgcgttc gaacgtggca attcaatcat atccactttt gaatgttcaa acggcttgct
     1261 tttggcaggc tttttctttt catcatctgc taaagtgact tgaaaatcat tcatttttga
     1321 tagttctcct tccagctaaa attattagtt attactacaa tttaattata acattaaatt
     1381 ttttgttttt ctagcttaaa cttttagtgt atatacttta ttatacatta tactgtcctg
     1441 gtagcatggg ctattaaaaa taattcgaag aattactttt tgattcgcga gtttcggcga
     1501 gcgtttttcg tttacgcggt tcgcaaacgt tcggcacgca gtgacgaagc caaggagcaa
     1561 atttgatgct aaagtatcaa aatagcgggc tggaaggcaa agtgtttagt cgcctattta
     1621 tgggcgacta aacacttttg acgaggaaaa cggaattatc tcgcgtgatt tattaaagtc
     1681 tgatctgtgt ttttttaaat ttaaaaaagt ggcatgatat agttataagg aattgatgaa
     1741 ctagagagaa tagacgaagc agaaaaatgc aacgtcggga ggaggaaaca gagggctgat
     1801 aaaattatca gaaagcagtt catcgattat caatttttag gatttttagc aacgtatatt
     1861 tttagaaaag aggaaaaaag aaaatgaaaa gtcggaggaa aaagaagtat ttaaactaga
     1921 tgaggaaaca catttttaat tagtaacgtg agatataaag tttatatcat tttatcgaat
     1981 atttagaaac aagaattttt tataacattt agtggaaaaa ataagtttag taatagtaaa
     2041 agaaaaagta atatcagaag taaagtaaaa atttagtttc acttaacagt agtaaagtaa
     2101 aatatcgatg caacagaaga ctttccggta acggaagacc aaccatcagt caaaaacgaa
     2161 aaaaacgtac gccttcggtc tttttttaaa aaggggtctg ggcagtaaaa aaacggaaga
     2221 acaaccgaaa atgttctgac aaagccagtc ataaaaatgt gctcattcat cgcggaatgt
     2281 atttcatcaa taacaaagta gtcgcggata gctttgtttc gtatccttaa caaggtttta
     2341 ttttcaaaga aaggaggttt gcgaatgagt aaagcagacc aacggcgcgc caaacgcgcc
     2401 agggcgaaag cccgcaaaca aagtcgcaaa gacgagctta aaacaagcgc agaagcacgt
     2461 cagaagcacg ttcaaaaaat cggtcaggat attatcaccg aaaaattcag agccggaaaa
     2521 ggcaagagcc gtcacgaagg gaaaaaggaa ggcgacaatt tcaaatacat cacgtcagag
     2581 aaggcttttc gcgacatttc ggcctgttgg cgtcgctttt cggcgttcgt ggcggagcgc
     2641 agtgacggca cggacataga aacgctagac gacattttaa agtacgcaga tgaatatatc
     2701 gcgtttaaaa tgtcagaagg gcgttcagcc tggactttaa caacgtataa ggcccattta
     2761 ggcaaggttt tcaaccttcc tacaacggaa tttatccaaa caccgccccg cgaacgtaag
     2821 aacgcgaaac gttctcgcag agaaacggaa aacgatcgac acatttcaaa gaaaaagctg
     2881 gactttttcg aacgggtcgg cggtgcgttg ggcttacgtc gccaagaatt agagaaaatc
     2941 aaaggcacag cgctagcacc acgacgggcc aagaacggtt tgtggtatat ccacgtcaca
     3001 gaaggcacga aggctggcaa agagcgctgg tcgccgattt tagctgaaaa tgaacaggaa
     3061 gaagctgaaa tcatcgaata tttcaaaaaa gcgggttcag attatgtttt cagcggtaag
     3121 catggcacac atcgcgtgcc gaaaaaactg gatcagcacg tcaatagagc tggctacgct
     3181 aaacgcatgt atctgctata tgccaaagac ccaaacacgc tgaaaaatca tcagaaaacg
     3241 cgtctcagaa aagaattgcg tgggtatgta ttggataaag cagcagagca gaaagtttct
     3301 gatgctcttg gacacaaccg agataatgag tatagaaaaa gctatgttta cgagctttta
     3361 gaataatatc attatttttg caaattattg atgtttttgt tgtacttgtc ttataaacaa
     3421 gtatcattgc tcaatttggt agctctggca tattcgaacc acttgacatt gaatttgctg
     3481 aatatcaaaa gttgaagaag aaaaaagggt agtcaataga ctatcttttt tgttaagagt
     3541 ttttattttc ttgattgaaa aaagggtagt ttatttcttt agattatcta ctttctgacc
     3601 tactttatat tactttatat tactttaggt gggagaaaaa gtcagcaata ccaagggttt
     3661 gcgaagaaat aaatatcaaa aagtgcgaaa taaataccaa aaaagtgcga aataagtatc
     3721 aaaaagtgcg aaataaatac caaaaaagtg cgaaaaaagt atcacgtttg ataaaatatg
     3781 atttttatga tattatttga taaagcgata taaataccaa aaaggtgcga ggatatgcaa
     3841 agaagaaaat cgtccaaagt tttagatgaa ttgatttcgc gaagtgatta cctggtcgtg
     3901 cagagtaacg atctggcgaa ggcgttcggc aatctaaaag catttgaaca caagatatta
     3961 gattactgtt tttcattcgt gcagaaagat tctgttccga acgagctttt cacggttgaa
     4021 atagccgtat tattgcgctt tttagggctt tcaaacagtg gaacgaatta taaacgtgtt
     4081 gtagaagcgt ttaaatcgtt aaatcaatca acggcattat atttgcccat aacgaaaaaa
     4141 gacggtacac gcggtattcg tatgacgcaa ttattctctt ttattgatta ttttgagact
     4201 ggtcgggtag aatttcgctt ttcagagtat gcacaaccct atatattcga tttgaagaag
     4261 catttctact cattccattt gagagaatta gcaaacgtga agggcaaata tgcgttgatt
     4321 ttgctgaaat tgtgggaagc tcatcgtttt ggagatagaa agctgactat cataaacgga
     4381 acgcttgacg agtggcaaaa ctggtttttg ggcgaagaaa aacgcattcc ggctggcaga
     4441 ttcatgcaaa acgtgctgac acgagcagta gaagagattg aagagaagtt tcccgtccaa
     4501 atcgttgtag atgtgctgaa acgcggtcga aacgttgtcg gatatgaaat tgagataaca
     4561 gacaataaac ggcaaagcaa agcagatttt ttccgcgaag ttgctgattt tgaagccgga
     4621 aagacagatg ttttgcctgg ttggcaagat taaaggtagt cagaaggcta tctttttctt
     4681 tttgtgcttg attatacttg actaataaac aagtataggg agattagggc aaaaaaaaga
     4741 gacagttcta tctgtcccag taaattctaa tcgtattgcg tgacaatttc gtctcacgct
     4801 gacaatctgc ctttgtccca aagggatttt tggcacgcca atcttttaca atgtgatctt
     4861 ttttaggtcg tccaacattc tcaaatttac cttgctggac taattcatct ctttcaacgg
     4921 ctaggatatg tcgatcaaga taagatagaa ctcgctccgc tcgttctatg tgggcggtct
     4981 tcgaccaccc caaaaggtgt gggggcaagc cccctccccc ttagacgcaa atagtttaat
     5041 tcaactggtt caaattgtgg taaaatagtt aggctgtcgg caaaccgatt gcgttccgcc
     5101 aggttcgtga aaggaggtgt agcctaatgc aaccaattct tcaagagctc ttgctctcta
     5161 tcgtggctga cgtcatcagc ggcttgctgc tgcttggtat cagcaaatgg ctggatagag
     5221 agtaacgctc gacagactgc ctcacccgtt taatctcaac tgagaacgta aaaaagcccc
     5281 ttgggactgc catcccttgg ggctttggtg ttgccgtgca accaattctt tcactcatga
     5341 ttatcccaca acatcagctt tctgtcaatg ttcaagcctg ctccgcaggt cgttcatatt
     5401 agaaattaga ataccgtgta acagttgtca cgtaacctgt gtaattggca tttttatagt
     5461 aactcgtcac agtcttgagt tgtctgtttt gaggatgtac atacaaagtt gttttgtagt
     5521 atgctccagg agcacttgga gcaatcatag acaccaagat agcccctata ctataagcaa
     5581 caccagcagg gttccagcca aaccccaaaa gcaaaccaat tacagagtga gctagaacaa
     5641 ttttaaaaaa tgttctactt tcgtctctaa aatatttatt tcacggtttc attgacgaca
     5701 agaaacctgg gactaaactt aataaattgt ctgttggtcg gtctaatgcc ccaccaacac
     5761 aatttatagt ttaatctgtc ccagcttgtc ttcaatgaac tttcgcgaca taaaacgcac
     5821 actgataaca gaaagagcta aaaaatggta aaatagtacg tatagcagtc agctagcact
     5881 gtatagcagt tgtatagcta gcgtatagaa agaatggtat aaaatggcag tacaattaaa
     5941 tatcagacta gaaccagaac agcgagataa gctgactaaa ctagctaaag aagcaggaat
     6001 gacgctaaca gcgtacatac tagataagac gctatacagt gctagcaatc atatagctga
     6061 caagctagca gatgatagca cacagctagc acgctatgaa gagcgcattg aaatgctcac
     6121 gaagcaaaat atatacatag aagagcaaaa aacaaaagaa atcgagcgac tagaaaacac
     6181 tattgcacag ctacatgagc aaatcaatag aaaagatgaa cagattgaga gagagcaaga
     6241 gcaagctaaa aatcaagcgc aggcgatttt aaccctgacg ctaaaaaatg agacattgag
     6301 attagagaca gaaagtagta aaaaatcttg gtggaaattt tggtaataaa aaacgggaca
     6361 cacaagcagc ctatgctttt cttaagcggt tagtgaagca gtttgatgaa ccgaaggttg
     6421 tagtcacaga taaagccccc tctattacaa gtgcctttaa gaaactaaaa gaatacggct
     6481 tttatcaagg gacagaacat cgtactatta aatacctgaa taatttgatt gaacaagacc
     6541 atcgtccagt aaagagacgc aataaattct atcgaagttt acgcactgcc tctaccacga
     6601 ttaaaggcat ggaagccatt cgaggattat ataagaaaac ccgaaaagaa ggcactctct
     6661 tcgggtttta ggtctgtact gaaatcaagg tattattggg aatcccagct taaatcatag
     6721 ataccgtaag ggattttatt ctttatttaa aactttgcaa cagaaccgtt catattattg
     6781 ttattttaaa ataacctttc ctaccaaatc attagcagat atattcatac tacttgccat
     6841 ttgaaactct atatcttcac cgcttgtaat aataactaaa atatcacttt gtttattact
     6901 cacatttaac atagctaaat ctatatctgc tattttggtt gaaggtacaa ccaaatcccc
     6961 ttctttaaca aatacctcaa aaggttttcc ttgcaattcc actgtatcaa ttcccatatg
     7021 aactaatact tcaacacctg tttctgattt caaaccaata gcatgttttg tcggaaaaac
     7081 agatgtgact ataccactaa tcggtgaata tacctctttt atattaggtc taatagcaaa
     7141 accatcccct aacattttct gagaaaacac atcatctttc acttctgtaa ttggaacaaa
     7201 tacccctgta tttacgctat gtagggttaa ttggttcgcc ttctttttaa attttttaaa
     7261 taaattcaca ctttatcttc ccttcaaaga aacaattact ccatttctag taattctctc
     7321 atttctgtct tatagactgc tgctttatta ccataaataa tttgaatacc agatggaaca
     7381 ttaacaacac cgtttgcccc tagtttttcc gtgaaatgag tacttgattc aactttactt
     7441 ggatctttta aagttattct caaacgtgta aaacaagcat ctactttttc aatattatct
     7501 ttaccaccga cagcaacaat gatcgcttct aaaagctctt tagaatctgt agtattttca
     7561 acagtaccag aaataacaac atcctctact tctctacctg gagtttttaa attccattta
     7621 ataatagcaa atttaaaaat aaaataatat aaacaaaaat ataaagcacc taaaggtatc
     7681 acccataacc agttagaacc tttatccgcc cccataattc cgttaaaaat aagcgacata
     7741 aatggtcccc caaatgaagc agaaccaact acgttaaatg atactatata agttaatagg
     7801 taagcgactc ctgataaaat tgcatgaata ccaaataaca tcggtgctac aaataaaaaa
     7861 ctatactcta aaggttcact aattcccatt aaagcacaag gaataactgc agctatcatt
     7921 aaggatgcaa cttttttctt gttagctggt agagctgttt tatacatagc taacgcagct
     7981 cccggtaaac caaacatcgc aaagattact tttccattca ttaaaaaacg gctaacacta
     8041 atatcaaatt ttgcccctgg cgtatttaaa atagcattat aaatattaac cgcaccttcc
     8101 accgcttgac cgccaatctc ctctacacca cccaaactag taaagaaaaa cggtaaataa
     8161 ataaaatgat gtaagccaaa tggtagtagt aaacgttctg atgttccata gacaaaagat
     8221 cctaaagatc cagttgacac gataaattca gacatagccc ccaaagcatt ttgaattggt
     8281 ggaaaaacaa atgccattat taaaccaaca aaagaagaaa caataatagt aatagctgga
     8341 ataaaacgtg tcccattaaa tagtgaaata acagatggta gttcaatttt ataatattta
     8401 ttgtgtaagt aactgactaa aagtccaatg ataatacctc caaaaactcc tgtatctaaa
     8461 gttagaactc ctaaaatact ccgctgacct gttaataaat tatcgggatc aatggttccc
     8521 tttaagacca agaaagaacc catcacagtg ttgagcgtca tgtaacctaa aaagctagct
     8581 aaagcagatg ttcctttctc ggatttagca aaaccatacg caattgaaat agcaaagata
     8641 acaggaatat tattattaac tacatttcca gcgtccttca tcaaactaaa taaatagacg
     8701 aagaaagtac tgcctaaaaa tggaactgat ttaattaggt taggattgga aaaagcactt
     8761 cctacgccaa ctaaaatacc tgatatcggt aaaatcaaca ctggagccat taaaactttt
     8821 cctaatttct gaaatgattc taaaatcttc tcttttgtca ttattatttt cctccgaaag
     8881 aaaacgattt cattcttgta ctaaataata gaagaagcgt aaagcccctt cttattattt
     8941 taattctggc cagtaatcta catttgcttc aattaaggca tctaaaatct ttctagcttt
     9001 tttagcatct actatagttc tatttaaagt taaagcttgt aatgcttttg tatatgattt
     9061 ttctaaataa gcttcacatg ttaatttttc gtaagcatat tggccttcga tcaatccttt
     9121 gtaaaaagta cctatttcac ctactgcata tggttgtggt ccattagcac ctaatgatgc
     9181 tgcgacttca atcattaaat catttggtaa attagaaaca atcccattat ttggaacaat
     9241 cacaataaag gtttttctta aattaccata gatagaagct gcaacttcaa caatcatatc
     9301 tccgtgggca tcattatgaa caatatggga gtcttttgct gttccaacct gagcaattct
     9361 ctcacactct tcaaacacac gtttttcacg tccatccatt acctcattag ctcgtgtata
     9421 attaggatct aatttagata acttgtattc aggatataaa taatactgta agtaagtatt
     9481 tggtagataa tctggaaagt ctttaaccat atcttccacc atagcataag tatctagcca
     9541 tgattgatca cgttgttctg catcaacagg taagaagcca ttcttaatcg tgtattcttt
     9601 gatttcaggt aataaatcat ttccttcttt atcatacaca tgtgtgaacc aaccaaaatg
     9661 gttcaatcca aaataagttg gttcaaattc gttaaaatca cgattgatta aacgtccaaa
     9721 cgaacgcaat agattgacgg gctgatcaca aatatttaaa atacgtttat catctgggaa
     9781 caccatattt aatgcatggg caacaatagc agctggattt gtataattta aaatccatgc
     9841 ttctggactt aatttacgaa catcttcaac taattctatc atgtctctaa ttgatctcat
     9901 tccataagca aacccacctg gtccacatgt ttcttgtcca ataagaccca tagacaaagg
     9961 aattttttca tctttttcac gcattggata accacccgta cgcatttgac agaaaacaaa
    10021 atcaacatct ctaaaagcct cttccttatc agttgtatag ataaactcta tatctggtgt
    10081 ttcctcccta aataaaatct caccaaattt cccaataact tcttgtcttt tttcatcaat
    10141 atcatacaaa gttattttat caaaaggaaa gatatcttga tgttttgtca aagcttttaa
    10201 aattcctgga gaccaagtag atcctcctcc aacgataaca atattattct tttttttcat
    10261 ttgaaccact ccgtttcatt tgataatcct attctataca atttttaatc aaaaaaacgc
    10321 ttttttgatg actctatatc aataacaccc ataaaat
//
LOCUS       DASGAC010000067        10294 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.067, whole genome shotgun sequence.
ACCESSION   DASGAC010000067 DASGAC010000000
VERSION     DASGAC010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10294)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10294)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10294
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.067"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(30..584)
                     /locus_tag="U1335_001244"
     CDS             complement(30..584)
                     /locus_tag="U1335_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009911037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM5231730.1"
                     /translation="MNITLKKNLKTTIAGLVAGISLLTAGVVSAETYTVKSGDTLSEI
                     AETHNTTVEKLAEQNKITNLDFIHVGQVIELGDVTVKAVESSVEQTQSTSTSTATATT
                     STYSSNLSAEDAAAKEWIAMKESSGSYDARNGIYIGRYQLTNTYLNGDYSPENQERVA
                     DAYVASRYGSWSAAKAFWLVNGWY"
     gene            complement(716..1510)
                     /locus_tag="U1335_001245"
     CDS             complement(716..1510)
                     /locus_tag="U1335_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HEM5231731.1"
                     /translation="MDKLILGRYIPRDSIIHRLDPRSKLLAMFGFLLMIFWANNLVTN
                     ALLIAFVLGMVVLSRIRLSFFINGLKPMIGIILFTTFFQVFFTPGATILWEFWIFKLS
                     VEGVQQAAIIFVRFVLIIFFSTLLTLTTTPLSLADGIESGLAPLKRFRVPVHEIGLML
                     SMSLRFVPTLMDDTTRIMNAQRARGVDFNEGNLIQKVKSVIPILIPLFASSFKRADAL
                     ATAMEARGYQGGDGRTKYRILEWKLADTLAILVMLALAGLLFILKK"
     gene            complement(1503..2345)
                     /locus_tag="U1335_001246"
     CDS             complement(1503..2345)
                     /locus_tag="U1335_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter ATPase"
                     /protein_id="HEM5231732.1"
                     /translation="MGIDLQEVSYTYQAGTPFEGRALFGVDLEIVDGSYTALIGHTGS
                     GKSTILQLLNGLNVPTEGRVVIDDVVITATSENKDIKQVRKKVGLVFQFPESQVFDET
                     VLKDVAFGPQNFGVSQEEAETIAREKLALVGIDESLFERSPFELSGGQMRRVAIAGIL
                     AMEPSILVLDEPTAGLDPAGRQELMDIFKKLHESGMTIVLVTHLMDDVANYADFVYIM
                     EKGKLVCSGKPVDIFQEVDFLESIQLGVPKITKFAANLERRGFVFERLPITIEEFTGM
                     VTHG"
     gene            complement(2321..3157)
                     /locus_tag="U1335_001247"
     CDS             complement(2321..3157)
                     /locus_tag="U1335_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter ATPase"
                     /protein_id="HEM5231733.1"
                     /translation="MMNIIEVKNLKYKYNQEDEQYTLNDVSFHVKQGEWLSIIGHNGS
                     GKSTTVRLIDGLLEAESGDIYIDGDALTVDNVWDKRRLIGMVFQNPDNQFVGATVEDD
                     VAFGLENQGIPLEEMRSRVDEALELVGMTDFKTREPARLSGGQKQRVAIAGVVALRPK
                     IIILDEATSMLDPEGRLDLIKIVREIKERHGMTVISITHDLDEVALSDRVIVMKNGQV
                     ESISTPNELFMREDLVDLDLDRPFTTELASSLRQTGLDLPLRYFTEEELEETLWELIS
                     KK"
     gene            complement(3154..3693)
                     /gene="pgsA"
                     /locus_tag="U1335_001248"
     CDS             complement(3154..3693)
                     /gene="pgsA"
                     /locus_tag="U1335_001248"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEM5231734.1"
                     /translation="MKKENIPNALTIGRILVIPIFILLLTVWDSTISHVLAALIFALA
                     SITDYLDGYLARKWQVVTNFGKFADPMADKILVMTAFIMLVELGFAPAWVVAIIICRE
                     LAVTGLRLLLVENGGTVLAAAMPGKIKTFSQMFSVIFLLLHWNVVGQITLYIALFFTL
                     YSGYDYFKGASFLFKDTFK"
     gene            complement(3703..4560)
                     /locus_tag="U1335_001249"
     CDS             complement(3703..4560)
                     /locus_tag="U1335_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5231735.1"
                     /translation="MRQKSIGEVLRTAREGRGWTFVDLQRITKIQAKYLQALEYNDFD
                     FIANSDDVQSILKAYAEALELDADVLLDAYETNSLVKYYEDGEEELRSSELKRSYKVR
                     KRKKNSYLPLIYLLLATGLIIIFVTYIVHSRLQNRASITPTTTSYSIVEQSVSEASSG
                     TETSSTEQVQSNSTSSSSSATENVTISGSGSNIVATLKTVTYPVEVTVTAKNTTSWIS
                     LSDTLLEGGVTLTPDNPTVTTTIEEGVTSTTLVLGVVKGVEVTVGGKKLDLSALTADT
                     GSITINFEQ"
     gene            complement(4642..5925)
                     /locus_tag="U1335_001250"
     CDS             complement(4642..5925)
                     /locus_tag="U1335_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEM5231736.1"
                     /translation="MKLIEKKYPYMKESVFYGKVDNGLTVILLPKVDFHETYGILTTN
                     FGGIHTRFTLANGNSVVYPAGIAHFLEHKLFETENEEDIMNEFAKLGASANAYTSFRQ
                     TSYLFSTTQKVLESLSLLQSFVREPYFTEDNVEREQGIIEQEIEMYQDDADYRLFTGI
                     LSSLYPESPLAYDIAGTVESIAAITVDDLHENFDVFYHPSNMNLFVIGNFDLEAVWKQ
                     ISSYQAAQMDNPAQSFELAGVQKLPIQEHLSEQFEVSTPKLAVGLRGNDEVDKETIQK
                     YRLSLQFLFAMLFGWTSKRYQQLYEQGKIDSSFQFQLEVTPEYHYLIISGDTQEPITL
                     SSILMKALRKFEDDADVTEDHLQLLKNEMYGDFIRSLNSLEFTASHFVSQYSEYENVF
                     DIPQMIQSLQLDDIREAGRRFIDHCDMTDFTIFPK"
     gene            complement(5922..7175)
                     /locus_tag="U1335_001251"
     CDS             complement(5922..7175)
                     /locus_tag="U1335_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEM5231737.1"
                     /translation="MKLQEGVDLHFIDTDQFTTNRIRIRFAAEMSEATVAGRVLVANI
                     FEMGNQEFQTAQAVRRRLAELYGAQFSTSVSKRGRVHCVDVTISYVSPRHLPENEDIT
                     VEILDFLYTCIFRPLKKGRGFDSQIFEVEKTNLINFLQSEIEDNFYHADVEMSKLFYK
                     DPSLQIPRVGRLDLVEKETAESTFQIYRNMLRMDKIDIFVLGKVDREQVKRKLEDFGF
                     TYRNPKLELEYHQEYSNITQEKIERKQARQSILELAYHLQVVYNDVNYPTLMVFNGLL
                     GAFSHSKLFMNVREKESLAYTIGSQVSIFSGMLKVYAGISRENRLRVMKLISKQLLDL
                     KCGKFTEEELELTKNMLIHSATLAQDRQNNLIEQVYNQVTLGNRNLSWLDWIEAIKSV
                     SIDDVIRVGQMINLQAVYFMEGTEE"
     gene            7249..7632
                     /gene="yaaA"
                     /locus_tag="U1335_001252"
     CDS             7249..7632
                     /gene="yaaA"
                     /locus_tag="U1335_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein YaaA"
                     /protein_id="HEM5231738.1"
                     /translation="MEFKLFDDYITLQALLKTTGILHSGGAIKGFLEENTILFNGEDE
                     KRRGKKIRVGDVITLPDHNTSITIVAPSAEEIKQHQEDQAEKERVAAIVKKLNQENKK
                     NKKQVKTPKKATKNTERKPVRFPGM"
     gene            7635..8729
                     /gene="recF"
                     /locus_tag="U1335_001253"
     CDS             7635..8729
                     /gene="recF"
                     /locus_tag="U1335_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HEM5231739.1"
                     /translation="MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIY
                     VLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGKVPLDIHLTDKGRVTKVNHLKQA
                     KLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
                     NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREEL
                     TIEYKNSIELTDDVNLIDKFLTELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYG
                     SQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQIKLLETITDTIQTF
                     ITTTSLDHLHKLPDSLKIFHIESGKVTESE"
     gene            complement(8800..10281)
                     /gene="guaB"
                     /locus_tag="U1335_001254"
     CDS             complement(8800..10281)
                     /gene="guaB"
                     /locus_tag="U1335_001254"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003090086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEM5231740.1"
                     /translation="MSNWDTKFLKKGFTFDDVLLIPAESHVLPHDIDLKTQLAPNLTL
                     NLPIISAAMDTVTDSKMAIAMARAGGLGVIHKNMSIAEQADEVRKVKRSENGVIIDPF
                     FLTPEHTIAEAEKLMATYRISGVPIVETLENRKLVGIITNRDMRFISDYSQPISTNMT
                     SDALVTAPVGTDLATAEAILHKHRIEKLPLVDENGRLSGLITIKDIEKVIEFPNAAKD
                     EFGRLLVAGAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIKEIREHFPTR
                     TLIAGNIATAEGARALYEAGVDVVKVGIGPGSICTTRVIAGVGVPQVTAIYDAAGVAR
                     EYGKTIIADGGIKYSGDIVKALAAGGHAVMLGSMFAGTDEAPGETEIFQGRKFKTYRG
                     MGSIAAMKQGSKDRYFQASVNEANKLVPEGIEGRVAYKGSVADMIFQMVGGLRSGMGY
                     VGAGNLTELHENAQFIEMSGAGLKESHPHDVQITNEAPNYSVQ"
BASE COUNT         3274 a         2310 c         1673 g         3037 t
ORIGIN      
        1 gcatcgtgct aggcctcttc taatttatct tagtaccaac catttaccaa ccagaaagcc
       61 ttggctgcag accatgaacc atagcgacta gcaacataag catctgctac acgctcctgg
      121 ttttctggtg aataatcacc attcaagtaa gtatttgtca actggtaacg accaatgtag
      181 ataccgttac gggcatcata gctaccgctt gattccttca ttgcaatcca ttcttttgct
      241 gctgcatctt cagcactcaa gtttgaagaa taggtgctag ttgttgctgt tgcagtagaa
      301 gttgatgttg attgagtttg ttcaactgaa ctctctactg ccttcactgt cacatcaccc
      361 aattcgataa cttgaccgac atggataaaa tctaagttgg taatcttatt ctgctctgct
      421 aatttttcaa cagtagtatt gtgtgtttca gcaatttcag acagggtatc accagacttt
      481 acagtatagg tttctgcact gactacaccc gcagtcaaaa gggagattcc cgctaccaaa
      541 ccagcaatag ttgtttttaa gtttttcttt aatgtaatgt tcataatagt cacattcctt
      601 tctgtcatgt gtctatcata ccctctaact attacttaga ctttgtgaaa ttgttacaaa
      661 tattacagac aaattgagat tagacaataa aaacgctatt tctagcgttt tttactcatt
      721 ttttcaatat aaataagagt ccggctaaag ctaacataac taaaattgct aacgtatctg
      781 ctaacttcca ttccaaaatc cggtacttgg ttctcccatc tccgccttga tacccacgcg
      841 cctccatcgc cgttgcaaga gcatctgccc tcttaaaact tgatgcgaat aacggaatca
      901 aaataggaat aactgacttt accttctgaa taagatttcc ctcattaaag tccactccac
      961 gagctctctg agcattcata atccgagtgg tatcatccat caaggtcggt acaaaacgca
     1021 agctcatgga caacatcaaa ccaatttcat gcacaggaac cctaaatcgc ttcaaaggtg
     1081 caagccccga ctcaatacca tcagccaagc taaggggtgt cgtcgtcaag gtcaataggg
     1141 ttgagaagaa aataatcaaa acaaagcgaa caaaaataat cgccgcctgt tgcacccctt
     1201 ctacagataa tttaaaaatc caaaactccc atagaatggt cgctccaggt gtaaagaaaa
     1261 cctgaaagaa agttgtaaat agaataattc ctatcatcgg tttcaaacca ttaataaaaa
     1321 atgataaacg aatacgagat aaaacaacca ttcctaaaac aaatgctatc aacaaggcat
     1381 tggtgaccaa attattggcc caaaaaatca tcaatagaaa tccaaacatt gctaaaagct
     1441 tacttcttgg atccaaacga tgaataattg aatccctagg aatatagcga cctaaaatta
     1501 atttatccat gtgtcaccat ccccgtaaat tcttcaattg taataggaag acgttcaaat
     1561 acaaaacctc ttctctccaa attagctgca aacttagtaa tcttaggcac tcccaactga
     1621 atactctcta aaaaatctac ctcttgaaaa atatcgactg gtttaccaga acagaccagc
     1681 tttccctttt ccataatgta aacaaaatca gcatagttag ccacatcatc catcaaatga
     1741 gttaccaaaa cgattgtcat gcctgattca tgaagctttt tgaaaatatc catcaattcc
     1801 tgacgccccg caggatccaa tccagccgtt ggttcatcca aaactaagat acttggttcc
     1861 attgccagaa tcccagcaat agctacccga cgcatttgac caccagatag ttcaaatggg
     1921 ctacgctcaa acaagctttc atcaattcca accaaggcca acttttcacg cgcaatcgtt
     1981 tcagcctctt cctgagaaac tccgaaattt tgtggaccaa aagcaacgtc ttttaagacc
     2041 gtttcatcaa acacttgact ttcaggaaat tggaacacca accccacttt cttcctgact
     2101 tgcttaatat ccttattttc agacgtcgct gtaatcacaa catcatcaat gactactctt
     2161 ccttctgttg gtacatttaa tccattcaag agttgtaaaa tcgttgattt acccgaaccc
     2221 gtatgcccaa taagggccgt gtaagagcca tcaacaatct ccaaatccac accaaaaagc
     2281 gcacgcccct caaaaggagt gccagcttga taggtatagc ttacttcttg gagatcaatt
     2341 cccataaagt ttcctctaat tcttcctctg taaaatagcg gagcggtaaa tcaagtccag
     2401 tctggcgcaa agatgaagcc agttctgtcg taaacggtct atccaagtct aaatctacca
     2461 aatcttctcg cataaatagt tcatttggag tgctaattga ttcaacctgt ccatttttca
     2521 tcacgataac tcgatcactc aatgcaacct catccaaatc atgtgttata gagataaccg
     2581 tcataccatg acgctcctta atttcacgga caatcttaat caagtctaga cgaccttctg
     2641 gatccaacat agacgtagcc tcatccaaaa taataatttt tggacgcaag gcaaccactc
     2701 cagcaatcgc caccctctgc ttctgaccac cagataaacg agcaggctca cgtgttttga
     2761 aatcagtcat tccaactaat tccaaagctt cgtcaactcg actacgcatc tcctccaaag
     2821 ggattccctg attctctaaa ccaaatgcaa catcatcttc aactgtagcg cctacaaatt
     2881 ggttatctgg attttgaaaa accatgccaa tcaagcgtcg cttatcccag acattatcaa
     2941 cagttaaggc atcaccatcg atataaatat ctccggattc agcttccagt agtccatcaa
     3001 tcaatcgaac agttgtcgat ttcccagaac cattatgacc aataatagac agccactctc
     3061 cctgtttcac gtgaaacgaa acatcattta gagtatattg ttcatcctct tggttgtatt
     3121 tatattttaa attttttact tcaataatat tcatcattta aatgtatctt taaacaaaaa
     3181 ggatgcaccc ttgaaataat cataacctga atatagggtg aagaaaagtg caatatagag
     3241 tgttatttgc cccacgacgt tccagtgtaa gagtaggaaa atcactgaaa acatctgtga
     3301 aaatgttttg atttttcctg gcatagccgc agctagaact gttccaccat tttccaccaa
     3361 gagtagacga agacctgtca ctgccaattc acgacaaata ataattgcaa ctacccaagc
     3421 tggagcaaag ccaagctcta caagcatgat aaatgctgtc atcaccaaaa tcttatctgc
     3481 catcggatcc gcaaattttc caaagttcgt tacaacctgc catttacgag ccaagtagcc
     3541 gtctagataa tccgtaatac tagctaatgc aaaaataagt gctgctaaga catgactaat
     3601 tgttgaatcc caaacggtca gtaacaagat aaaaattgga attaccaaga tcctacctat
     3661 cgtcaatgca ttgggaatat tttctttttt catataaaac ctttattgtt caaaatttat
     3721 tgtaattgag cctgtatctg ctgtcaaggc tgatagatct agctttttgc cacctacagt
     3781 tacctctact cctttgacaa caccaagaac aagtgtagta gaagtcactc cttcttcaat
     3841 agtagtagtt actgttggat tatcaggtgt tagtgtaacg cccccctcta acaaggtgtc
     3901 cgaaaggctg atccaactcg ttgtattttt tgctgttaca gttacttcta ctggataagt
     3961 cactgtttta agggtcgcaa caatgttaga acctgatcct gaaatagtca cattttctgt
     4021 agcggaacta cttgaactcg ttgaatttga ctgcacctgc tcagtagaac tcgtctctgt
     4081 gccactactt gcttcagata cagattgctc aactatacta tatgatgttg tagtaggcgt
     4141 aatagatgct ctattttgaa gcctgctatg aacaatataa gtcacaaaaa taataatcaa
     4201 acccgtcgcg agtaataagt aaatcaacgg aagataagag ttctttttac gtttacgaac
     4261 cttatagctt cttttcaatt ctgaagagcg tagttcttct tctccatctt cataatattt
     4321 cactaaacta ttggtctcgt aagcatccag tagaacatct gcatctaatt ccaaagcctc
     4381 agcatatgct tttaaaatag actgaacatc atctgagttt gcaataaaat caaaatcatt
     4441 gtactcaagt gcctgcaaat atttagcttg gatttttgtt atccgttgca agtcaacaaa
     4501 tgtccaaccc cgtccttctc tggctgttct aagtacttcc cctatactct tttgtctcat
     4561 aatactctct ctctatcgct catcatgtac agtatactat tctaacaaaa ttccaaggaa
     4621 atttcgacgg gttgcgccca cttattttgg aaaaatcgtg aaatctgtca tatcacagtg
     4681 atcaataaag cgacgacctg cctctctgat gtcatctaac tgaagacttt gtatcatttg
     4741 aggtatatca aaaacatttt catattctga atactgagaa acaaagtgac tagctgtaaa
     4801 ctcaagagaa tttaagctac gaataaaatc tccatacatc tcgtttttca acaattgtaa
     4861 atgatcctct gtcacatctg catcatcctc aaatttccta agtgctttca tcagtatact
     4921 agaaagcgta atgggttctt gagtatctcc cgagataatc aaatagtggt attcaggtgt
     4981 aacctctaat tggaactgga aagaagaatc aatttttccc tgctcgtata actgttgata
     5041 tcgttttgaa gtccaaccaa acaacatggc aaataaaaat tgtaaactaa gccgatattt
     5101 ctgaatagtc tccttatcaa cctcgtcatt tccccgtaaa ccaacagcca attttggggt
     5161 agatacttca aattgctctg agagatgttc ctgtatcggc aacttttgga cacctgccaa
     5221 ttcaaacgac tgagctggat tatccatctg agctgcttga taacttgaaa tttgtttcca
     5281 aactgcctct aaatcaaaat taccaataac gaataaattc atgttacttg gatgataaaa
     5341 cacatcaaaa ttctcatgta aatcatccac agttattgca gcaattgatt caactgtccc
     5401 tgctatatca taggccaaag gactttctgg ataaagcgat gatagaattc ccgtaaacaa
     5461 gcgataatct gcatcatctt gatacatctc gatttcttgt tcaataatcc cctgttctct
     5521 ttctacattg tcttctgtaa aatacggttc tcgaacaaaa gattgtaaaa gtgatagaga
     5581 ctccaatact ttctgagtcg ttgaaaataa gtaactagtc tgtctaaaac tggtataagc
     5641 atttgcgctt gctcccaatt tagcaaactc attcataata tcctcttcat tctcagtttc
     5701 aaacagctta tgttctaaaa aatgtgcaat ccctgcagga taaacaacac tattaccatt
     5761 agccaatgta aatcgagtat gaataccccc aaaatttgtc gttagaattc catatgtctc
     5821 atggaaatct actttaggaa gcaaaataac tgtcaaccca ttgtcaactt tcccataaaa
     5881 gacagactct ttcatgtaag gatacttctt ctcaattaac ttcattcttc tgtcccctcc
     5941 ataaagtaaa cagcctgtaa attaatcatc tgtcctactc gaatgacatc gtctattgat
     6001 accgatttga tagcctcaat ccaatctaac caacttaaat ttctatttcc taaggtaact
     6061 tgattatata cttgttctat caaattattc tgcctatctt gagccaaggt tgctgaatga
     6121 atcaacatgt tttttgtcaa ctctaattct tcttctgtaa acttaccaca ttttaaatca
     6181 agtagttgtt tactaattaa cttcattacc ctgagtctat tttcacggct aattccagca
     6241 tagaccttca gcattcctga aaaaatagag acctgactgc caattgtata ggccaaactt
     6301 tctttctcac gaacattcat aaataacttc gaatgggaaa aagcacccag tagaccatta
     6361 aataccatca aagtcggata gtttacatca ttgtaaacca cttgtaaatg atatgccaat
     6421 tccaaaatgg actgccttgc ctgtttacgc tcgatttttt cttgcgtgat atttgaatat
     6481 tcctgatgat attctaactc taattttgga tttctataag taaaaccaaa atcttcaagt
     6541 tttcttttga cttgttctct gtcaaccttc cctaagacaa atatatcaat tttatccata
     6601 cgcaacatat tccgataaat ctgaaaggtt gattctgctg tttctttttc aaccaaatca
     6661 agcctaccga cgcgtggaat ttgaagagag ggatctttat aaaaaagctt actcatttca
     6721 acatctgcat gataaaaatt atcttctatc tctgactgaa gaaaattgat taaattcgtt
     6781 ttttcaacct cgaaaatctg gctatcaaat cctcgtccct ttttcagtgg tctaaatata
     6841 cacgtgtata aaaaatcaag aatctctact gtaatatcct cattttctgg taagtgacga
     6901 ggactgacat atgaaattgt cacatctaca cagtgcaccc taccacgttt cgaaactgag
     6961 gtcgagaact gagcaccata caattctgcc aatcttctcc gaacagcctg agcagtctga
     7021 aattcttggt tacccatttc aaaaatattt gcaactaaca cacgaccagc aactgtagcc
     7081 tcactcattt cagctgcaaa gcgaatacgt atacgatttg tcgtaaactg atctgtatca
     7141 ataaaatgaa gatctactcc ctcttgtaat ttcatcgtct tcctctttca aacattgtac
     7201 cttccattat accattttgt gatataatat tctgtaacga ggtgacttat ggaatttaaa
     7261 ttatttgatg actacatcac attacaagca ttgttaaaaa cgactggtat tctccattca
     7321 ggaggcgcca ttaaaggttt cttagaagaa aataccattc ttttcaatgg agaggatgaa
     7381 aaaagacgcg gtaaaaaaat ccgtgtcgga gatgttatca cactcccaga ccacaacacc
     7441 agcatcacaa tcgtcgctcc tagtgcagag gaaatcaaac agcaccaaga ggatcaagct
     7501 gaaaaagaac gtgtggctgc aatcgttaaa aagttaaatc aagaaaataa aaagaataag
     7561 aaacaggtaa aaactcctaa aaaagcaact aaaaatactg aaagaaaacc tgttcgtttc
     7621 cctggtatgt agacatgtgg ctagaacgat tagagttaca acattttcgc aattacaacc
     7681 aattagatat tgagttccac aaagggctca atgtcttttt aggcgaaaac gcccaaggaa
     7741 aaaccaatat tctagaatct atctatgttt tagccttaac acgaagtcat cgaacacgga
     7801 cagataagga cctactacag tttcaagaaa aggaattatc tatttctggt ttactccatc
     7861 gcacaagcgg taaagttccc cttgacattc acttgacaga caaggggcga gtgaccaagg
     7921 tcaaccatct caaacaagcc aagctttcca actatatcgg ccacatgaat gttgttctct
     7981 tcgcccctga agatttacag ctgattaaag gtgcccctgc tttgagaaga aagttcatcg
     8041 atgtcgagct cgggcaaatc aagccactct atctctctga cctatcgaat tataatcacg
     8101 ttttaaaaca aagaaatact tacctcaaat ctacagataa gattgatgag aacttcctat
     8161 ccgtgttaga tcagcaactt gctgaatatg gtagtcgtgt tatccaacat cgtattgact
     8221 ttctaaagaa attagaggaa ttcggaaata gaaaagttca agaaatatct ggcaatcggg
     8281 aagaattgac aatcgaatac aaaaactcaa tcgaattgac agatgatgtc aatttaattg
     8341 acaaattctt gacggaattg gaaaggtgtc gcaaacgtga tttatttaag aaaaatacag
     8401 gagttggacc acatcgagat gatgtagctt tctttataaa tggaatgaat gcccattatg
     8461 gtagccaagg tcagcaccgc agtctcgttc tgtcactcaa actggctgaa attgagctga
     8521 tgaaggaggt cacacgagaa tacccaattc tactcttaga tgatgttatg agtgagctgg
     8581 ataataatcg tcaaatcaaa ctactagaaa ctattacaga tacgattcaa acatttatta
     8641 caacgacatc tttagaccat ttacataagc tacctgatag tttaaaaatc ttccatattg
     8701 agtctggtaa ggttactgag tcagaataag attgtttaca ctgttgtcaa taaaatttac
     8761 aaaaaagtaa agaccctgtc aagagggtct tgtttttgtt tactgtactg agtagtttgg
     8821 agcttcgttt gtgatttgaa catcgtgtgg atggctttct ttcaaaccag cacctgacat
     8881 ttcgatgaat tgagcgtttt catgcaattc agtcaagtta ccagcaccta catagcccat
     8941 acctgagcga agtccaccaa ccatttggaa aatcatatct gcaactgaac ctttataggc
     9001 tacacgacct tcaattcctt ctggaaccaa cttgttagct tcatttacag atgcttggaa
     9061 gtaacggtct tttgaacctt gtttcatggc agcgatagag cccataccgc gataggtctt
     9121 gaacttacga ccttggaaga tttctgtctc acctggtgct tcatcagttc ctgcaaacat
     9181 agaaccaagc ataacggcat gaccaccagc ggcaagtgcc ttgacaatat ctccagaata
     9241 tttgatacca ccatcagcga taatcgtttt accatattca cgcgcaacac cagcggcatc
     9301 atagatagct gtcacttgtg gtacaccgac acctgcgatg acacgtgttg tacagattga
     9361 acctggtcca ataccgacct tcacaacatc aacaccagct tcataaagag cacgagctcc
     9421 ttcagctgtg gcaatgttgc cggcaatcaa ggtacgagtt gggaagtgtt cacgaatttc
     9481 tttaatcttg cgaagaacgc ctgctgagtg accgtgagct gtatcgatga caatcgcgtc
     9541 tgcacccgct tcaaaaaggg cttctgcacg ttcaaaagta tcagatgtaa caccaacagc
     9601 acccgcaacc aagagacgac caaattcatc cttcgcagca tttgggaact caatcacttt
     9661 ctcaatatct ttgatggtaa tcaagcctga caaacgacca ttttcatcaa ccaatggcaa
     9721 tttttcaata cgatgcttgt gaagaatagc ctcagcagtc gcaagatctg ttccaactgg
     9781 cgctgtcacc aaagcatcgc ttgtcatgtt ggtcgaaatt ggctgtgaat agtcagaaat
     9841 gaaacgcata tcacggttgg tgatgatacc aactaattta cgattttcca atgtttcaac
     9901 gattggcaca ccggaaatac gataagtagc catcaatttc tcagcttcag caatggtgtg
     9961 ttctggtgtt aagaagaatg gatcgataat gacaccattt tcagaacgtt ttaccttacg
    10021 cacctcatca gcctgctccg cgatagacat gttcttatgg atgacgccca aaccacctgc
    10081 acgcgccata gcgatagcca ttttgctatc tgttactgta tccatggcag cagaaataat
    10141 cggaagatta agggtcaaat ttggtgctaa ttgtgttttt aaatcaatat catgtggcaa
    10201 tacatgactt tcagccggaa taagtaatac atcgtcgaaa gtaaagcctt ttttcaaaaa
    10261 tttagtgtcc cagtttgaca ttttcttcct cttt
//
LOCUS       DASGAC010000068        10239 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.068, whole genome shotgun sequence.
ACCESSION   DASGAC010000068 DASGAC010000000
VERSION     DASGAC010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10239)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10239)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10239
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.068"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            117..7265
                     /locus_tag="U1335_001255"
     CDS             117..7265
                     /locus_tag="U1335_001255"
                     /inference="COORDINATES: protein
                     motif:HMM:NF017180.1,HMM:NF019142.1,HMM:NF019216.1,
                     HMM:TIGR01168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G5 domain-containing protein"
                     /protein_id="HEM5231741.1"
                     /translation="MKKNFNEKQQRFSFRKLSVGLVSATVASLFFMTSIATAQGVGAQ
                     SIQLTYVTEQELTDQEKNAIVYDVPGKVEKTDATYYLVYRPALSSSIWQTEDDSTASS
                     VFFETNQSIITPLVQKSVEKAQASPHGLPKTGLFDNLLLGMAGIFTLVLAVKVSKKGK
                     KELASVILLTATGASFLAPTSHAISSQILAKFNHAIEISEGQSLPVPNDIEGYVYVGY
                     LKESKEEVDQTAEAPVITAKPDTAPTHSLPEAKISEKFVTENEDIPFEKVTIYSSALM
                     AGEQKVTQVGQVGKQVVESKQTYVNGQLVKTEKLSTKVVSEPVEEITMIGTKDSDMNL
                     SNSIDLPTLPIETKNITKTKDIPFETHEIENAALVEGETRVAQEGANGIQTITIQQTI
                     VEGQVLKEEEVSSEITKAAIPRLIEIGTKKSDEKVITEVPDSAPTHQVPSIEISEEIA
                     SHVESIPFETQEVYDANLAEGVRQTVQVGQAGQRVIESKLTYAGGVLLKSEIISESLQ
                     AAIPQIVHIGTKPISPMPEPEPIPEPVPDSPIENTGEIITEVPNNAPTYEVPAIQLTE
                     EIISNVESIPYPTQEIMDPNLPEGTRQVVQVGQIGTRTIDAKLTYADGILIRSEILSD
                     VTSQPIAEIIAIGTKIQEQDKITTEVEHTIIDIQFDTEYVDDPSLPLGQEQVQSNGVL
                     GQKTVTTTYTLINGVRQANPTVSEEITKQPISQIIARGTKVIEEKTEVETRTEVMPFD
                     IVVRESDKLYLGEERVQVEGKVGSKEITTIYQTIKGVRQSNPTVTEKVLTEPVSKQVL
                     KGTKPVEGTEVDKRTEEIAYETKEIPSADLYVGEERVQVEGKVGSKEITTTYQTIKGV
                     RQPNPTVTEKVLTEPVAKQVLKGTKPVEGTEVDKRTEEIAFETKEIPSTDLYVGEERV
                     QVEGKVGTKEITTTYQTIKGVRQPNPIVTEKILVEPIAREILRGTKPVTAIEKDIKTE
                     VLPFETKYIDDPTILEGKTVVEKEGKDGLKTITTIYQTIRGVRQNPPLSIEELVDHPE
                     DKVVRRGTKVEKIPTVTIIGLDKNEDNRSATASYKLDNPTDNYLRAIALLYKGDQLVE
                     EKEITDANGNFEFTNLDFYTDYTLKTKVFYTLDSVEHNAIQESLREFNLFYKKIEVKD
                     IDAVTVYRRKDGKYTSAYILDETPANSDDLFVKVTSDRFKDIYLPISSVRETTKDGQP
                     VYELTSTFDQLVEDNGTGFNQQKVFYIPKVTKENGVYTDFTSLLDAMKANPTGTFKLG
                     ANLYADEVQVGDVKAYMTDTFQGTLLGESNGNKYAIHNLKAPLFAKIERATISGIDLK
                     NVQISSALHRDLGSLANETAYSTISDVAVQGNLRAQRNLGGIVYKLDYQSRLSNASFQ
                     GKLDSYGRGESYVGGIVGMNPGSYIRDVKADVNISILGENNQAAGAIAGRVTGWHSGN
                     EINIKNAYATGSVTNLGTSQKVGGMVGTNDRGWNYGSFDNLVSQVQVTGGQPVIGQVF
                     DVATKLSNAFSTIAGENNSQITAQQAESKLSNMAITAKLSDSDYKDLNAYSVDYSNVT
                     NAKTDHTVAYLNMEKILPFYNKELLVYYGNTIATTDKLNQVKLVDVVPMKDNAVVADL
                     IADKASINKIMLYFEDGTVDYKSVAYAEDFKNNHIIEYDIAGMHIPYTPESFVNQNEA
                     MVNRLFALLSPIAYESEALLKQLNPPAQAANQTTNDINDMYFKSSFNRIKDNLSGYLR
                     KVLTATMNGQGQSVETYFENKITNNKEAFLLGLSYLDRWYDINYDALNTKELTLFNMD
                     FFGNHSASTLDAIISIGQAGYEALRPKNNVELYSSYLAEMTGKSTVFDLVESYRKVFS
                     PNKTDNQWFKDNTKAYIVEMKSQVPEALEKQNTATKHSKYAVEVYDKITNPTWRYRQM
                     LLPLLTMENEDIYIISNMNTVAFGAFSRYRDLVNHPEKREEVYAIINQAAIWQRDHTD
                     FWYKTLNDENKDKMFGAYMNTDGFGLFDENGTRVWHNLSSSNAAIQDFFGPIAKWYGS
                     NGTAAYANGSETHFVAYSMLDKVGSSTYTHEMVHNLDSNTFFYGFGRRTGQGPELYAR
                     GLLQNVSNTEDNIIALNTMYTELDKKDSLIRVQPYNPVERFNSQEDLNTYAHHMFDAI
                     YMLDYLEGSVVLQQDAAVKKAWFRKIENYYDGVHAGNQIRPLTDEEVAKLVTFDDLID
                     QSIMNRRQYSDNEKLARNGYYNTFLLSPIYSALDNPTGAPGDLMFRRMAYELLAAKGY
                     DEGFVPYVSNQLKSESPNGIVTDTVVLQHVFNNKYATWSEFKKDMYKERIDQLTKLKP
                     ITIVYELDKPNSTNTVTINSYQDLENLMKAAVEEDMKRLDRATSNVNTSWVHSLKRKV
                     YSELLRSTDEFRNSIFYP"
     gene            7399..7902
                     /locus_tag="U1335_001256"
     CDS             7399..7902
                     /locus_tag="U1335_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5231742.1"
                     /translation="MMIKPLETKSEMLGKAYVHWKSWQEAYADLLPQEFLKNTYTLER
                     CQDWAVRYPQNILIAVMDDKVVGFACYGSSSQEDLQGAGELYALYVLADYYNQKIGYQ
                     LMQAALEKLQSYETVTLWVLEGNARAIAFYEKVGFRFDGVKKTVNLGAERTEYRMIFK
                     QKERENG"
     gene            7895..8362
                     /locus_tag="U1335_001257"
     CDS             7895..8362
                     /locus_tag="U1335_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase"
                     /protein_id="HEM5231743.1"
                     /translation="MARKEMVTLTNMCLIEDKEGKVVVQIRDPKRYRWSGVAFPGGHI
                     EEGENFHDSVVREVQEETGLTVTDARLVGLKHWPDKEGHRYIVFLYKATEFTGTIRST
                     EEGEVRWVEKSDLPQMDLAYDLLEILKVMDEPDLSEFFYTRKNDDGEWDKNFR"
     gene            8558..9007
                     /locus_tag="U1335_001258"
     CDS             8558..9007
                     /locus_tag="U1335_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010764706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutP/PduV family microcompartment system
                     protein"
                     /protein_id="HEM5231744.1"
                     /translation="MELESKKIMFVGPVGVGKTTLTQRLKGLDISYFKTQAIQFYDSI
                     IDTPGEFLQHRRYYNALSVTAAEAEVIGLLVSATASMQTFPQGFSSLFNKPVIGIVTK
                     VDLVTDAGSLEKARAQLLAAGAKEIFEVSLEDNRGIEAIQNYLTKES"
     gene            9017..9388
                     /locus_tag="U1335_001259"
     CDS             9017..9388
                     /locus_tag="U1335_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEM5231745.1"
                     /translation="MKVEHGGNMNQLTSDFGFRPEDCLDFSANINPLGLSDKVKSRII
                     ETLDSLVHYPDVTYSQSKAALAAYHECNSQQILLSNGAVEIFYELARYVKPQKILLLS
                     PTFMEYEKAFRQQGSEIIYHI"
     gene            complement(9389..10235)
                     /locus_tag="U1335_001260"
     CDS             complement(join(9389..9929,9928..10235))
                     /locus_tag="U1335_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611222.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HEM5231746.1"
                     /translation="MAYSLDFRKKVLAYCEKRGSITEASVIFDISRNTIYQWLKLKEK
                     TGELHHQVKGTRPRKVDRDKLKNYLDTHPGAYLTEIASEFDCHPTAIHYALKAMGYTR
                     KKKSCTYYEQDPEKVELFLKELNNLSHLTPVYIDETGFKTYFHREYGRTLKGQLLKGK
                     VSGRRYQRISLVAGLINGALTAPMTYKDTMTSDFFEAWFKTFLLPNLETPSVIIMDNA
                     KFHRMSKLKDLCEEQGHRLLPLPPYSPEYNPIEKTWAQIKKHLRKALPNCDTFLETLL
                     SFSCFS"
BASE COUNT         3415 a         1762 c         2166 g         2896 t
ORIGIN      
        1 aaatatgtaa tttatctcta gaaaaaacga aagattactt gaattaaaga ttagaagttt
       61 tgaaagcatt tcaatttcat agtataatga aattactaac taggggggta gcgaaaatga
      121 aaaagaattt taatgaaaag caacaacgtt tttcctttcg taaattgtct gtaggacttg
      181 tctctgctac tgttgcaagt ctatttttca tgacatcaat tgcaacagct caaggagttg
      241 gtgcacagtc tattcagttg acctatgtaa cagaacaaga attaacggat caagaaaaaa
      301 acgcaattgt ttacgatgtt ccgggaaaag tagaaaaaac ggatgctacc tattatttgg
      361 tatatagacc tgctttgtca tcatcaattt ggcaaaccga ggacgattcg acagcttcat
      421 cggtcttttt tgaaactaac cagtctatta ttactccatt agttcaaaaa agtgtcgaga
      481 aggcacaagc tagtccgcat ggcttaccca aaacaggttt atttgataac ctactgttag
      541 gaatggctgg tattttcact cttgtccttg cagttaaagt tagtaaaaaa ggtaagaagg
      601 aattggcaag tgttatcttg ctaacagcga ctggtgcaag ctttctagct ccaaccagtc
      661 atgctatttc tagtcaaatc ttagcgaaat ttaaccatgc cattgaaatc tctgaaggtc
      721 aatccttgcc tgtaccaaat gatattgaag gatatgttta tgtaggttac ttaaaggaaa
      781 gtaaggaaga ggtcgaccaa acggctgagg cgcctgtaat cacagcgaaa cctgacactg
      841 ctcctaccca ttcattgcct gaagcaaaaa ttagtgagaa gtttgtaacg gaaaatgaag
      901 atattccatt tgaaaaagtc acaatttatt ccagtgcctt aatggctggt gagcaaaaag
      961 ttactcaagt tggtcaggta ggaaagcaag tagttgaatc aaagcaaact tacgttaatg
     1021 gtcagttagt taagacggag aaactgtcaa cgaaagttgt tagtgagcct gttgaagaaa
     1081 tcacaatgat tggaacaaaa gattcggaca tgaatctgtc caattcaatc gatttgccga
     1141 ctctaccaat tgaaaccaaa aatattacta aaacaaaaga tattccattc gaaacccatg
     1201 aaatcgagaa tgcggcactg gttgagggag aaactcgtgt cgcccaagaa ggcgcaaatg
     1261 gcattcaaac cattactatc cagcaaacga ttgtggaagg gcaagtcttg aaggaagaag
     1321 aagtttcttc tgagataaca aaagctgcaa ttccaagact tatcgaaatt ggtacaaaaa
     1381 aatctgatga aaaggttatt actgaagtgc ctgattcggc tccgacacat caagtacctt
     1441 ctatcgagat ttcagaagaa atcgccagtc atgtggagag tattccattt gaaacccagg
     1501 aagtttatga tgcaaactta gctgaagggg ttagacagac tgtacaagtt ggacaggctg
     1561 gtcaaagagt gatagaaagc aagctcactt atgcaggagg cgttctacta aaatcagaaa
     1621 ttatttccga gtcactacag gctgcaattc cccaaattgt acatattggt acaaaaccga
     1681 taagtccaat gccagaacca gagcctattc cggagccagt cccggattct ccaattgaaa
     1741 atactggtga gatcattaca gaggttccta ataatgcacc tacatatgaa gttcctgcca
     1801 ttcaattaac agaagaaatt atttcgaatg tagaatctat tccatatcca actcaagaaa
     1861 tcatggatcc aaacttacct gaaggtacta gacaggtggt tcaggttggg caaattggaa
     1921 cacgtacaat tgacgcaaaa ttaacctacg ctgatggaat attgattaga tcagaaattc
     1981 tttctgatgt gacaagtcaa ccaatcgccg aaattattgc aattggaaca aaaattcaag
     2041 aacaagataa gattacaaca gaagtcgaac acactataat agatattcag tttgacacag
     2101 agtatgttga tgacccaagc ttaccccttg ggcaagaaca agttcaatct aatggagttt
     2161 tggggcaaaa aacggttaca actacctata cacttataaa cggtgtccgt caggccaatc
     2221 caacggtatc agaagaaatt accaagcagc cgatttcaca aattattgct cgtggtacta
     2281 aagttattga agaaaaaact gaagttgaaa caagaactga agtgatgccg ttcgatattg
     2341 tggtcagaga gtcagataaa ttatatttgg gcgaagaacg agttcaagtg gaaggcaaag
     2401 taggctccaa agaaattaca acaatctatc aaacaatcaa gggtgtccgc caatcgaacc
     2461 caacagtcac agagaaggtt ttgacagaac cagtatctaa acaagttctc aaaggcacca
     2521 agccagttga gggtactgaa gttgacaagc gtacggaaga aattgcctat gaaaccaagg
     2581 aaattccaag cgctgatctt tatgttggcg aagaacgagt tcaagtagag ggcaaagttg
     2641 gctccaagga aattacaaca acctatcaaa ccatcaaggg agtccgccaa cctaatccaa
     2701 cagtcacaga gaaggttttg acagaaccag ttgccaaaca ggttctcaaa ggtacaaaac
     2761 cagttgaggg tactgaagtt gacaagcgca cggaagaaat cgccttcgaa acaaaggaaa
     2821 ttccaagtac tgatctttat gttggcgaag aacgagttca agtagagggc aaagttggta
     2881 ctaaagaaat cacaacaacc tatcaaacta tcaagggagt ccgccaaccc aatccaatag
     2941 tcaccgaaaa aatcttggtt gagccaatcg ctagagaaat tcttcgtggt acaaagcctg
     3001 ttacagcgat tgaaaaggat attaaaacgg aagtattacc ttttgaaaca aagtatatcg
     3061 atgatccaac gatattagaa ggtaagactg ttgttgaaaa agaggggaaa gacggattaa
     3121 aaaccatcac caccatctat caaactatta gaggtgttcg tcaaaatcca ccgctttcta
     3181 ttgaagagct agtagatcat ccagaagaca aggttgttcg ccgaggtaca aaagtcgaga
     3241 aaattccaac agtaacaatc ataggcctag ataaaaatga agataatagg tcagcgacag
     3301 cgagttataa actagacaat ccaacggata attacctacg tgcaattgct ctgttgtaca
     3361 agggagatca actggtagaa gaaaaagaaa tcacagacgc aaacggaaat tttgaattta
     3421 caaatcttga tttctataca gattacacct tgaaaacaaa agtcttctac actttggata
     3481 gcgttgagca taatgccatc caagaaagct tgcgtgaatt taatctgttt tataagaaaa
     3541 ttgaagtgaa ggatattgac gccgtgacag tctaccgtcg taaagatggg aaatatactt
     3601 ctgcctatat acttgatgaa acgccagcca actctgatga tttatttgta aaagtcactt
     3661 ctgatcgttt taaggatatc tatcttccaa tttcatcggt tagggaaacg accaaggacg
     3721 gacagccggt ttatgaatta actagcactt ttgatcaatt agtagaagat aatggaacag
     3781 gattcaatca acagaaagtc ttttatatac caaaagtgac caaggaaaat ggagtctata
     3841 ctgattttac ttctctattg gatgctatga aggctaaccc gactggaaca tttaaacttg
     3901 gtgctaatct ctatgctgat gaagttcagg ttggagatgt gaaagcttat atgaccgata
     3961 ccttccaagg gaccttgctt ggtgagtcaa atggaaataa atatgctatt cataatctga
     4021 aagcgccact cttcgcaaag atagaacgtg caacaatttc tggaattgat cttaaaaatg
     4081 ttcaaataag ttctgctttg catcgcgatt taggaagttt ggcaaatgaa acagcctatt
     4141 caactatttc ggatgtagca gttcaaggaa atctaagagc acaacggaat ctcggaggga
     4201 ttgtctacaa actggattac caatcacgtt tgtcaaatgc aagtttccaa ggtaagttag
     4261 attcttatgg aagaggtgag tcatacgtag gtggtattgt cggtatgaac cctggttcat
     4321 atatcagaga tgtgaaagca gatgtgaaca tctctattct cggtgaaaac aatcaggcag
     4381 caggtgctat tgcaggtcgt gtgacaggtt ggcatagtgg aaatgaaatc aacattaaaa
     4441 atgcctatgc aactggtagt gtgaccaacc ttggtacaag ccaaaaagtt ggtggtatgg
     4501 tcggaaccaa tgataggggt tggaattatg gtagctttga caatctggtc agtcaagttc
     4561 aggtgacagg cggtcaacca gttattggtc aagtctttga tgttgcgacc aagttgagca
     4621 atgctttttc aactatcgct ggtgaaaata attctcagat aactgctcaa caagcagaaa
     4681 gtaaattgtc aaatatggca atcactgcta aactgtctga ctccgattac aaagacttga
     4741 atgcatactc agttgattac agcaatgtaa ctaatgcaaa aacggaccat acagtggcat
     4801 acttaaatat ggagaaaatt ttaccattct acaacaagga attacttgtt tattatggaa
     4861 atacgattgc cactactgat aagttaaatc aagttaaact tgttgatgtc gttccaatga
     4921 aggataatgc ggtagttgct gatttgatag cagataaggc aagtatcaac aaaattatgt
     4981 tgtattttga agatggaacg gttgactaca aatcagttgc ttacgctgaa gatttcaaga
     5041 ataatcatat catcgaatat gatattgcag gtatgcacat accgtatact ccagaaagtt
     5101 ttgttaatca aaatgaagct atggtaaatc ggctttttgc tctattgtct ccgattgcat
     5161 atgaatcaga agcgctgttg aaacaactaa atccacctgc tcaggcagcg aatcaaacga
     5221 caaatgacat caacgatatg tacttcaagt caagtttcaa tcgcattaaa gacaatcttt
     5281 ctggctatct ccgtaaggtt ttaacggcta cgatgaatgg tcaaggccag agtgttgaaa
     5341 cctatttcga gaataagatt acaaataata aagaagcatt cttgctaggt ttgtcttact
     5401 tagacagatg gtacgatatc aattatgatg ccttgaatac aaaagagtta accttgttca
     5461 atatggattt ctttggcaat cattctgctt caacattgga tgccattatt tcaattggtc
     5521 aagcaggtta tgaagcttta agaccgaaaa ataatgtgga actttattct tcctatttag
     5581 ctgaaatgac tggaaaatca actgtatttg acttggttga atcctatcgt aaggtgtttt
     5641 caccaaataa aacggataat caatggttca aggacaatac aaaagcatac attgtcgaga
     5701 tgaaatctca agttccagaa gcattggaaa aacaaaatac agctactaaa catagtaagt
     5761 atgctgttga ggtatatgac aagattacaa atccgacttg gagataccgt cagatgctct
     5821 tgcctctgtt aaccatggaa aacgaagata tttatattat ttccaatatg aatacggtag
     5881 cctttggtgc ttttagtcga tacagagatc tggtaaatca tccagaaaaa cgggaagaag
     5941 tctatgcaat cattaatcaa gcagccattt ggcaacgtga ccatactgac ttctggtaca
     6001 aaacattaaa tgatgaaaat aaagacaaga tgtttggtgc ctacatgaac acagatggtt
     6061 ttggcttgtt tgatgaaaat ggaacaaggg tttggcataa tctatcaagc agtaatgcag
     6121 ctattcaaga tttctttggt ccgattgcaa aatggtatgg aagtaatgga acggctgcct
     6181 atgcaaatgg gtcagaaacc cactttgtag cttactcgat gttggataag gtcggaagtt
     6241 ctacctatac gcatgaaatg gttcataacc tggattctaa tacattcttc tatggatttg
     6301 gtaggagaac tggacaaggc ccagagctct atgcgcgtgg tttattgcaa aatgtaagta
     6361 atactgaaga taatatcatt gcacttaata ccatgtatac tgaattggat aagaaagatt
     6421 cattgattcg tgttcagccg tacaatccag tcgagcgctt taacagccaa gaggatttga
     6481 atacctatgc acatcatatg tttgatgcca tctacatgct tgattactta gaaggtagtg
     6541 ttgttttaca acaagatgcc gctgtcaaga aagcttggtt cagaaagatt gaaaactatt
     6601 acgatggtgt tcatgctggt aaccaaattc gtccattgac tgatgaggaa gtggctaaac
     6661 tggtaacatt tgatgacttg attgatcaaa gcatcatgaa ccgcagacaa tattctgaca
     6721 atgagaaatt ggctagaaat ggctactata atacattctt attgtcacca atctattctg
     6781 ctttggataa tccgactgga gcacctggag atttgatgtt tagacgcatg gcttatgaac
     6841 tcttggctgc taaaggatat gatgaaggat tcgttccgta tgtaagtaat caattgaaat
     6901 cagaatcacc aaatggaatt gttactgata cagttgttct acaacatgtc tttaataaca
     6961 aatatgcaac ttggtctgaa ttcaagaagg atatgtacaa agagcggata gatcaattga
     7021 caaaattgaa gccaattacg attgtatatg aacttgataa accaaattca acgaatacag
     7081 tgaccatcaa ttcttatcaa gatttagaaa atctgatgaa agcagcagta gaagaagata
     7141 tgaaacgctt ggatcgagcg acttcaaatg tgaatacaag ttgggttcat agtttgaaga
     7201 gaaaggtcta tagtgaactc ttgcgttcaa ctgatgaatt tagaaattca atattttatc
     7261 catagacgtt tatgttaaga acataattaa ataagtcgtt agaatgccaa atttttaacc
     7321 cataatcata aacaagttgg tcttgtgcca acttgttttt taatgtatac tagaggaaaa
     7381 aattaggagg tacattagat gatgattaaa ccactggaaa cgaaaagtga aatgctaggc
     7441 aaggcctatg ttcattggaa atcgtggcag gaggcctatg ctgacttgtt acctcaggaa
     7501 tttttaaaga atacttacac cttagaacgc tgtcaagact gggcggttcg gtatcctcag
     7561 aatatcttga tagctgtgat ggatgataag gtggttggct ttgcctgtta cggctcgtct
     7621 agtcaggagg atttgcaagg ggcaggggag ctctacgccc tctatgtctt ggcggactat
     7681 tataatcaga agataggtta ccagctcatg caggcagctt tggaaaaatt gcagagctac
     7741 gaaaccgtta ctctctgggt attggagggg aatgcgcgtg ccattgcctt ctatgaaaaa
     7801 gtgggcttcc gatttgatgg tgtcaaaaaa acggtcaatt taggtgcaga acgtacagaa
     7861 tatagaatga tttttaaaca gaaagagaga gaaaatggct agaaaagaaa tggtcacttt
     7921 gaccaacatg tgtctaatcg aagataagga agggaaggtc gttgtacaga ttcgagatcc
     7981 caagcgttat cgttggtctg gtgttgcctt tccaggtgga catattgaag aaggcgagaa
     8041 tttccatgat tcagttgtta gagaagtgca agaagaaaca ggtttaacag tcactgatgc
     8101 tcgcttggtt ggtcttaaac attggccgga taaggaaggg catcgttaca ttgtatttct
     8161 ctataaggca acagagttta caggaactat ccgatcaact gaagaaggcg aggtgcgttg
     8221 ggtcgagaag tcggacctgc ctcagatgga tttggcctat gatttgctag aaatactgaa
     8281 agtcatggat gagccagatt tgtccgagtt cttttatact agaaaaaatg acgatggaga
     8341 gtgggacaag aattttaggt aaataacatt caattaaatg ttgatgaagt gttcaagata
     8401 gtttatacta tacttgttga tatatataaa tggcaaagga gcctgttgtt cgcaatgaag
     8461 cggaagtttt ggaacaacgg gataactttg ccttttttat ttttgaatga ttgttgaaat
     8521 tggatttttc taataatttg cttgagagga tgattgtatg gaacttgaat caaaaaaaat
     8581 tatgtttgta ggcccagttg gtgttggaaa aacgacacta acacaacgtt tgaaggggct
     8641 tgatatttcc tattttaaaa cacaggctat acaattttat gattctatca ttgatacacc
     8701 tggtgaattt ttacaacata ggcgctatta caatgcttta tctgtaacag ctgcagaagc
     8761 ggaggtgatt ggattattgg tatcagcaac tgcttctatg caaacatttc ctcagggatt
     8821 ttcatcttta tttaataaac cagtgattgg cattgtcacc aaggttgatt tagtgacaga
     8881 cgctggcagt ctagaaaagg ctagggccca attactagcg gcaggtgcca aggaaatctt
     8941 tgaagtgtct ttagaagata atagaggtat tgaagcgatt caaaactatt tgacaaagga
     9001 aagttgaggt gaggatatga aggtagaaca tggaggaaac atgaatcagc ttacctctga
     9061 ttttggtttt cgcccagagg attgcttaga ttttagtgcc aatatcaatc cattaggtct
     9121 ttcagataaa gtaaaatcaa ggataataga aactttagat agcttagttc actaccctga
     9181 tgtgacctat tctcaatcca aggctgcctt ggctgcatat catgaatgca atagccagca
     9241 aatcctttta tctaatgggg cagtagaaat cttttatgaa ttggctaggt atgtgaagcc
     9301 ccaaaaaatc ttgctgttaa gtccgacatt tatggagtat gaaaaagcat ttcggcagca
     9361 ggggtctgag attatctacc atatatagtc aactgaaaca agagaaggac aaaagtgtct
     9421 caaggaaagt atcgcaattt ggcaaggctt ttctgaggtg ttttttgatt tgagcccatg
     9481 ttttctcaat gggattatat tccggtgagt aaggaggaag tggtaaaagt ctatgcccct
     9541 gctcctcgca taaatctttt agcttgctca tcctatgaaa ctttgcgtta tccataatga
     9601 taacggatgg tgtctctaaa ttggggagta agaacgtttt gaaccaagct tcaaaaaagt
     9661 cgctagtcat agtatctttg tatgtcattg gagctgtaag cgcaccattt atgagacctg
     9721 caactaagga tatccgctgg tatcttcttc cagagacctt accttttaac aactgacctt
     9781 tcaaagtgcg accatattct cgatgaaaat atgtcttaaa ccctgtctcg tcaatataaa
     9841 caggagtcaa gtggcttaag ttattcaatt ctttaaggaa cagttctact ttttcagggt
     9901 cttgttcata gtaggtacag ctcttttttt cgagtatatc ccatagcttt gagggcgtaa
     9961 tgaatagctg ttggatgaca gtcaaattca gaagctattt cagttaaata agcacctgga
    10021 tgagtgtcaa gataattctt taatttatct ctatccactt ttcttggcct ggttccttta
    10081 acttggtgat gaagctcgcc tgttttctct tttaatttta gccattgata gatagtgttg
    10141 cgtgaaatat cgaaaataac agatgcttca gtaatactgc ctcttttctc acagtatgcg
    10201 agaacttttt tacgaaaatc taatgaatat gccataaat
//
LOCUS       DASGAC010000069        10228 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.069, whole genome shotgun sequence.
ACCESSION   DASGAC010000069 DASGAC010000000
VERSION     DASGAC010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 10228)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10228)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10228
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.069"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            48..374
                     /locus_tag="U1335_001261"
     CDS             48..374
                     /locus_tag="U1335_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000273865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM5231747.1"
                     /translation="MHFPVPAVLTEFLIMAILESDDSYGYEICQTIKLIANIKESALY
                     PILKKLEQKDFLTTYSQEYQGRMRKYYSLTQLGHEELVRLKDDWDTYTATINGIIEGS
                     VRHDKN"
     gene            361..1116
                     /locus_tag="U1335_001262"
     CDS             361..1116
                     /locus_tag="U1335_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1700 domain-containing protein"
                     /protein_id="HEM5231748.1"
                     /translation="MTRTEYMEQLEKHLKKLPHKEYFEAINFFKEYFDEAGPEREADI
                     IEELGSPKEAASELINNMLNKQIQEDKDQQEPVQLNWKHWAGLGALSMIALFSFFLLF
                     VMGEFIGFIPLFITLMIGAFLVGRYFRTFSRTKRTLWLAILAVISLPVTVPLLLILLA
                     GLLGLIFLLLAFIFGGFALGIVLITSGGYLIWEGFSLMSEGVNIFLMGLGSGLSLIGG
                     AILLYILTGFFAYWSWRLVKACFKWILKRGKRA"
     gene            1113..2171
                     /locus_tag="U1335_001263"
     CDS             1113..2171
                     /locus_tag="U1335_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
                     /protein_id="HEM5231749.1"
                     /translation="MKKKVTIAIIIGFVSLIAGLILAGIGFFTGGITRLEEVAAPTEI
                     HKTFSDLNTIKVDFIPHSIYIKESSDSNYHVTYANSDNNIQTPLKLSEKDGVLTLSAQ
                     ELEFAIEGIMQYLGESLAQRRINVFSVTIEVPKGKTLNKLEAHSLHFYDFGGLTIENI
                     HIKEANLSGGVDLNKVTIDSGQIETGYFQATQSTLKDTQINLQGSSVRLTETSLESIS
                     IEGYSQLDSKQVTLLGDNRFTPSDTYSSTTFLDVTDKSLADSNLLITNQIDKKKLVEA
                     QGYYYEDGEDLGEIVNQDPYLQERLEEVGIFTSDKYTKFPVKTENDLQTLTLENKDSQ
                     NKLTIEATNATINLGTPK"
     gene            complement(2214..3422)
                     /locus_tag="U1335_001264"
     CDS             complement(2214..3422)
                     /locus_tag="U1335_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017769259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5231750.1"
                     /translation="MNSLFLVAKETYLRQVKSWSFVFMVFAPFIMIFFSLGIGYLTGS
                     SMDQGGQEIALISQEASVQSAFEDLDGLTSDYTDEEAAKKALEDEDLLGYLIVTVSDG
                     QLSAVYHGNELPSIETETAIQQTLAELQDQLNKEDAQLTSQQEATLARTPAYQVQLVE
                     NKGYEKIGKFILFFALIFLLYVLTMIYASTTAQEVASEKGTKIMEVIFSSVPASTYFY
                     GRILGIFMVIATHLGIYALGGVGSYQFASLALLTMQDNPIAQAVLGGFDWFILFFSLF
                     GLVLIVVIAALCGSLVVRQEDVNKAVQPVMYPIIIGFIGAMTLGQQAQESILLKIGSY
                     VPLLSTFFMPIRIINGWANGLEAGLSLLILIASTVAAIYFIGKSYAGLILQTDDIGLW
                     KSLKKGLSSK"
     gene            complement(3419..4312)
                     /locus_tag="U1335_001265"
     CDS             complement(3419..4312)
                     /locus_tag="U1335_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231751.1"
                     /translation="MLEVRHLCKSYGTKEVLKDISFTIPSGTICGLVGKNGAGKTTFF
                     HSLLRFVTYEGEIILDQQAVTPALFQKIGYLPEERSLMPKLSVFEQVRYLASLKGMTS
                     KEVAEKLPLWMKKLEVKGKMTDKIKSLSKGNQQKVQLIVTLIHEPDLIILDEPFSGLD
                     PVNTALLKRVILEEKERGATLIFSDHVMTNVEELCDQLLMIQDGQLVLNGGIQEIRRQ
                     FGRTRLFISSDVARERLEGLPHVLSVQMTNQDKWRLVLDDEAAGPELFQLISGGSYLA
                     TFDQQAPTIDEIFKIKSGVAE"
     gene            complement(4437..6896)
                     /locus_tag="U1335_001266"
     CDS             complement(4437..6896)
                     /locus_tag="U1335_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhgE/Pip domain-containing protein"
                     /protein_id="HEM5231752.1"
                     /translation="MLQKVKNIFKKPMTLVTIIGIACVPALYNISFLTSMWDPYGRLD
                     QLPVAVVNQDQSASFQDKTLTIGDDMVDNMKESKSLDFHFVSEKDAEKGLEEGDYYMV
                     ITLPEDLSEKASSLLTNQPEPLTISYQTSKGHSFVASKMGESAMEKLKSSVSETITET
                     YTSAVFDSMGEIQNGMVEAADGSQQLTDGASQLETGSQTLSSGLSTLSSSGQSLVTGA
                     NQLATGVVSYTDGVNQAASGSQTLSSGLTTYTNGVASLSSGAEQLNANSSQLIAGVGQ
                     LQTGASQVEQLVTGANQLQAGLEQLASSTSLSAEQSSQIQALLTGLPQLQAAINQLND
                     SLSSIGGLAVDTSTLSSLLTEMGAQAQGLLTAAQADKTASIEALQATATYQNLTADQQ
                     AELVGALQNSPSTTVTAAQTILGQLSQLSQALSGLQSLSGMAAQMSQLQSAVGQINTA
                     ANQALPGATTAIENLSSGLSQVNTALNQQVLPGTQALTSGVSQLQMQLSSGASQLMSG
                     VTAYTAGVAQLAEGGAQLVANNSSIQSGGSQLTSGLATLAANSSQLVSGSGQLASGSQ
                     QLIAGADQLASGGQTLTNGISSLRTGSETLTNSLSSASQQLSVVSVEDKNAQAVSQPV
                     TLEHSDQDDVKTNGVGMAPYMVSVALMVAALSANVIFVKHIDNRSYKNRWDWAKGKLL
                     LNGIIASLAAVILYGVLRLIGIEPAHPMATLGLILLASWTFMALVTALVGWNNRFGSF
                     ASLIILLLQLGSSAGTYPIELSPRFFQLIQPYLPMTYSVSGLRQTISMVGNSSHQVWM
                     LSLFLVGFMGLGLMMYRPTED"
     gene            7022..7555
                     /locus_tag="U1335_001267"
     CDS             7022..7555
                     /locus_tag="U1335_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM5231753.1"
                     /translation="MGTDNRKERTRQTILEAMVTCLESQGFNDITTTHLAQTAGISRS
                     SFYTHYKDKYELIDSYQQGLFHKLEAIFDRYDGNRQSSFLEIFELLYREKLLSALLTH
                     NGTQEIQNFLINKVRLLIANDLAERLGKENLSQLEKEYRSIYFSHAFFGIMQVWIKNG
                     KQESPQFMTDFLIKMLP"
     gene            7639..8622
                     /locus_tag="U1335_001268"
     CDS             7639..8622
                     /locus_tag="U1335_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM5231754.1"
                     /translation="MIQAEHLSKTYSIIDKEVGLKGSIKAFFKPKKKSIPAVQDISLQ
                     VGKGEIIGYIGSNGSGKSTTIKMLTGVLYPDQGSVRINGLNPQEHRKEVNKQIGVLFG
                     QKSHLDWNLPVLESFILHAKIYDVPDAIFKERLAVLMNLLDLADIMKQPIRNLSLGQR
                     VRCEFAAIFIHQPAVVFLDEPTIGLDASVKETIRSFIRYMNQEYQTTFLITSHDMKDI
                     ESLCERIFIIDKGKKVYDGSLTVLKERFSTVKTILFSTEKPIEKDLQLDGWEFEQLDD
                     FHFEIHYQSKFWTSAQVIEQVFNHYAIEDVTMKELEIETMVRQIYEEGIHA"
     gene            8615..9394
                     /locus_tag="U1335_001269"
     CDS             8615..9394
                     /locus_tag="U1335_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-2 family transporter protein"
                     /protein_id="HEM5231755.1"
                     /translation="MRKYLYMTRLTMMNAMQYKAFFLATFVSLAVKILVALYVWKTIF
                     FTQSEVNGFTLQTFTTYIIFANLLASLNSFSLGEDLSYSILKGSIAGEFLRPYSFILA
                     LFFKDLGNKLLELIKFAIVFIGILLVHQDFYLPDGQTILLFLVSSILGMFIVQLLDMA
                     FGFLAFFTVNAWGVMLLRMGLFNLASGALLPLSFYPQAVENFLKLLPYNYAVNVPVSI
                     LLGQESDLTALGLQVIWIPILACFIAALWSQAKRRIVIFGG"
     gene            9396..10178
                     /locus_tag="U1335_001270"
     CDS             9396..10178
                     /locus_tag="U1335_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-2 family transporter protein"
                     /protein_id="HEM5231756.1"
                     /translation="MKKYISLYLYNIKVYMMAQMSFRVDFFIGLFSSLIEQIVYLIFL
                     NILFGNIKEIAGFNYGQMLFIYGIATVGRSIHLIFFDNLWMFGSRYIRQGEFERLLLM
                     PVNPLFQLICERIQPQGIGTTLIGSLALVQASNELGMEWSLVKLALLIFIAICIGLLY
                     AAIQLGPTALAFWIVESFPLTMGIFALNQMAQYPLNIYPKIIQILLIFVFPYAFTAYF
                     PALYFLDLSMWGLALPLVVLILFTINYKLFRYGMTKFTSVGN"
BASE COUNT         2844 a         2412 c         2144 g         2828 t
ORIGIN      
        1 aattttgata tataatatat ttcaacacaa gaagaaagga gaagcctatg cactttccag
       61 tccccgcagt gctgacagaa tttctcatca tggccattct ggaatccgat gattcttacg
      121 gatatgaaat ctgtcagacc ataaaactca ttgccaacat caaggagtcg gccctctatc
      181 ctatcctgaa aaagctagag cagaaggact ttttgaccac ctactcccaa gaataccaag
      241 gccgcatgcg aaagtattat agcctgaccc agctgggcca tgaagaactg gtccgactca
      301 aagatgattg ggatacctac acagcaacca ttaacgggat tatagaaggg agcgttcgcc
      361 atgacaagaa ctgagtacat ggagcagttg gaaaaacacc tgaaaaaact gccccacaag
      421 gaatacttcg aggccattaa cttcttcaag gagtactttg acgaagcagg gcctgagcgg
      481 gaagccgaca tcatcgaaga actaggctca ccaaaagaag cagccagcga gctgattaac
      541 aatatgctca acaagcaaat ccaagaagac aaagatcaac aagagcctgt ccaactcaac
      601 tggaaacact gggctgggtt aggagccttg agcatgatag ccctcttctc cttcttcctc
      661 ctctttgtca tgggcgagtt tatcggcttt attcccctgt tcattaccct gatgatcggt
      721 gccttcttgg tcggtcgcta cttccgcacc tttagccgca ccaagcgaac gctctggttg
      781 gccattctgg cggtgatttc cctacctgtc accgtgccac tccttctcat cttactggct
      841 ggtttgctgg gcttgatttt cctcttgctc gccttcatct ttggcggatt tgctctggga
      901 attgtcctca tcaccagcgg tggctacttg atttgggaag gatttagcct gatgtcagag
      961 ggggtcaaca tcttccttat ggggcttggc tctggcctat ccttgattgg cggtgccatt
     1021 ctcctctata tcctgactgg atttttcgct tactggtctt ggcgactggt caaggcttgc
     1081 ttcaaatgga tcttgaaacg aggtaaacga gcatgaaaaa gaaagtgaca attgcaatta
     1141 tcatcggctt tgtcagcctg attgctggct tgatactggc tggcattgga tttttcaccg
     1201 gaggcataac ccgcttagaa gaggttgctg ctccaacgga aattcacaag actttctcag
     1261 atttaaacac cattaaggtg gactttatcc cccacagcat ctacatcaag gagtctagcg
     1321 atagcaacta ccatgtaacc tatgctaact ccgacaacaa tatccaaact cctctcaaac
     1381 tcagcgaaaa agacggcgtc ttaaccctct ctgcacaaga actagaattt gccattgagg
     1441 gaatcatgca gtatttagga gaaagcctag cccaacgtcg tatcaatgtc ttctcagtca
     1501 ccattgaagt cccaaaaggg aagacactga ataaattaga ggcgcacagt cttcacttct
     1561 atgattttgg cggtctcact attgaaaata tccatatcaa agaggcgaat ctgtctggcg
     1621 gtgtcgatct taataaggtg accattgata gcggtcagat tgaaacaggt tacttccaag
     1681 caacccagtc cacgctcaag gatacacaga tcaaccttca aggcagtagc gtccgcctga
     1741 ctgaaaccag tttggaatcg atatccattg aaggctatag ccaactggat agcaagcaag
     1801 taacccttct tggtgataat cgcttcaccc cctctgacac ctattcttct acaacatttt
     1861 tggatgtgac ggacaagagc ctggcagata gcaacttgct catcaccaac cagatcgaca
     1921 agaaaaagtt agtagaagcc caaggttact actatgaaga tggggaggat ttgggagaga
     1981 tagttaacca agacccttac ttacaagaga gactagagga agtcggcatt ttcactagcg
     2041 ataagtacac caaattccct gtcaagacag aaaacgatct acagacccta accctagaaa
     2101 acaaggacag ccagaacaaa ctgaccatag aagccaccaa tgccacaatc aatctaggga
     2161 cacctaaata agaatgataa aaccagctta gtttcctagg ctggtttctt catttattta
     2221 ctagatagac cttttttcaa gcttttccaa agaccgatat catctgtttg cagaatcaag
     2281 cccgcatagg attttccgat aaagtagatc gctgctactg tgctggcaat gaggataagg
     2341 agggaaagcc ctgcttccag accatttgcc cagccgttga tgatacgaat tggcatgaag
     2401 aaggtcgata acagtggcac ataggagccg attttgagta agatagactc ctgagcctgc
     2461 tgacccaagg tcattgcccc gataaagcca ataataatag ggtacatgac tggctggacg
     2521 gccttattga catcttcctg acggaccacc aaggagccac agagggccgc aatgacaaca
     2581 atcaggacca gaccaaagag ggagaaaaag agaataaacc agtcaaatcc gcccaaaaca
     2641 gcctgagcaa tgggattgtc ctgcatagtg agcagggcta gactggcaaa ctggtaactg
     2701 cccacaccgc caagagcata gatgcccaag tgagtggcaa tgaccatgaa aatccctaga
     2761 atccggccgt agaaataggt cgatgccggt acactagaga agataacctc cataatcttg
     2821 gtccccttct cactggccac ttcctgagca gttgtcgaag cataaatcat agtcagaacg
     2881 tagaggagga aaatcaaggc aaagaagaga ataaatttcc caatcttctc atagcccttg
     2941 ttctcaacca actggacctg ataagctggg gtgcgagcca gtgtcgcctc ttgctgactg
     3001 gtcagctggg catcttcctt gttcaactgg tcctgaagct ctgccagagt ctgctggata
     3061 gccgtttctg tttctatact tggcagttca tttccatgat aaacggctga gagctgaccg
     3121 tcgcttacgg ttacgatcaa atagcccaac aagtcctcgt cctcgagagc ttttttagct
     3181 gcttcttcat cggtgtagtc tgaggttagc ccgtccaagt cctcaaaggc cgactgaaca
     3241 gacgcctctt gactaatcag ggcaatctcc tgaccacctt ggtccatgct agaccccgtc
     3301 agataaccga ttcccaatga aaagaaaatc ataataaagg gagcaaagac cataaagaca
     3361 aaggaccaag acttgacctg acggagatag gtttccttcg caactagaaa taatgagttc
     3421 attctgccac ccccgatttg attttgaaga tttcatcgat tgtcggagct tgctggtcaa
     3481 aggtcgccag atagcttcct ccgctgatga gctggaagag ttctggtcca gcagcttcgt
     3541 cgtccaagac caaccgccac ttgtcctgat tggtcatctg aacagacagc acatggggca
     3601 gaccttccag gcgttcccgt gccacgtcgg acgagataaa gaggcgggtc cgaccaaact
     3661 ggcgacggat ttcctgaatg cctccgttga gcaccagctg tccgtcctga atcatcagca
     3721 gttgatcgca cagttcctcc acattggtca taacgtggtc agagaaaatc aaggtcgctc
     3781 cccgctcctt ttcctccaaa atcacacgct tgagcaaggc cgtattgaca ggatccagcc
     3841 cagaaaaagg ctcgtccagg ataatcaggt ctggctcatg aatcagggtg acaatcaact
     3901 gcaccttctg ctgattcccc ttggacagac tcttgatctt atcggtcatc ttgcccttga
     3961 cctcaagttt tttcatccag agtggcagct tttccgccac ctccttgctg gtcatcccct
     4021 taagactagc cagataccgc acctgctcaa agacgctgag cttgggcatc agacttcgct
     4081 cttctggcag gtagccgatt ttttggaaca aagctggtgt gactgcctgc tggtccagga
     4141 taatctcacc ctcgtatgtg acaaagcgga gtaaggaatg gaagaaggtg gttttccctg
     4201 ctccattttt cccgactaga ccacagattg ttcctgatgg aatcgtgaat gaaatgtcct
     4261 tcaagacttc cttggtcccg taacttttac ataagtgacg aacttctaac atctcaacct
     4321 ccttagaatt gattgctttt attgtacacc tttttgttgt cattgtaaat gatacatgta
     4381 aaaaaaagca aaaaataaca gaacaggaaa cctgctctgc tattatccaa aagaaactag
     4441 tcctctgtcg gtcgatacat catgagacct aatcccataa aacctactaa gaagaggctc
     4501 agcatccaaa cttgatgact actatttcca accatagaaa tggtttgacg aagacctgaa
     4561 acagaatagg tcattggaag atagggctga atgagttgga agaagcgtgg gctgagttca
     4621 attggatagg tacctgcact tgagccaagc tgtagtaaca agataattaa acttgcgaag
     4681 gatccgaaac gattgttcca acccaccagg gctgtaacga gggccatgaa ggtccaagaa
     4741 gctaagagga ttaatcccaa ggttgccatt ggatgagccg gttcgattcc aatcaagcga
     4801 agaacaccgt acaaaatcac tgctgctaga ctggcaataa taccattgag caagagtttt
     4861 cctttggccc agtcccaacg attcttgtag gagcgattat caatgtgttt gacaaaaata
     4921 acattggcag ataaggctgc aaccattagg gcaacagaca ccatgtaagg agccatgccg
     4981 actccgttgg ttttcacatc atcttggtca ctgtgttcca aggtgactgg ttgagaaact
     5041 gcttgtgcat ttttgtcttc tacagagacg actgatagtt gttgactggc tgagctgagt
     5101 gaattcgtta gggtctcact acctgtacga agactggaaa taccgtttgt caaggtttga
     5161 ccgccacttg ctaattgatc cgcaccagca attaattgct gactacctga agccagttgt
     5221 cctgaaccgc tgacaagctg actggagttg gcagccaagg ttgccaatcc tgatgttaac
     5281 tggctacctc cagattggat gctactatta ttcgcaacca actgggctcc accctctgct
     5341 aattgagcaa cacctgcggt ataggctgtc acccctgaca tgagttgact agctccactt
     5401 gacagttgca tttgaagttg actcacacca ctcgtcaagg cttgagttcc tggtagaact
     5461 tgctggttca aggcggtatt gacctgactc aagccacttg ataggttttc aatggctgtt
     5521 gtagcacctg gcaatgcttg attggcagcc gtgttgatct gaccgacagc tgattgaagc
     5581 tggctcattt gtgctgccat gccagaaaga ctttgtaagc ctgataaggc ttgactgagt
     5641 tgcgacaatt gacccaaaat cgtttgggct gctgtcactg ttgtcgaagg tgaattttgg
     5701 agagcaccaa ccaattcagc ttgctgatca gctgtcaagt tttgataggt agccgttgct
     5761 tgtaaggctt caatgctggc tgttttatcg gcttgtgctg cagtcaacaa tccttgagct
     5821 tgagccccca tctctgtcaa gaggctagat agagtagagg tatctactgc aagtcctccg
     5881 atacttgaga ggctatcatt taattggttg atggccgctt gcaactgagg aagccctgtc
     5941 aataaggcct gtatttgact agactgttca gcagacaaac tagttgaact agccagttgc
     6001 tccaagcctg cctgcaattg attggctccc gttaccaatt gttcaacctg gcttgctcct
     6061 gtttgcaatt gtcccacccc agcgatgagc tgagaggaat tggcatttaa ttgctctgca
     6121 cctgaagaaa gactcgctac cccatttgtg taggttgtta agccactgga aagtgtttga
     6181 cttcctgaag cagcctgatt gactccatct gtataagaca caactcccgt agccaattgg
     6241 tttgctcctg tcaccagtga ttgacctgat gaagataagg tagataagcc tgatgataga
     6301 gtctgacttc cagtttctaa ttgactagct ccatctgtca attgttgact tccatctgct
     6361 gcctcaacca tgccgttttg aatctctccc atgctgtcaa aaacagccga ggtgtatgtt
     6421 tcagtaatcg tctctgaaac agatgacttt aatttctcca tagctgattc gcccatctta
     6481 gaagcaacaa agctatgacc tttggaggtt tgataggaaa tcgttagtgg ttcaggctga
     6541 ttcgtcaaga gactagatgc tttttctgac aaatcttctg gtagagtgat gaccatatag
     6601 tagtctcctt cttccaagcc tttctccgca tccttttctg atacaaagtg gaaatccaga
     6661 cttttgctct ctttcatatt atccaccata tcatcaccaa ttgtgagggt tttatcttga
     6721 aagctcgccg actggtcttg attgacaact gctacaggaa gctggtctag tcggccgtaa
     6781 gggtcccaca tagaggttag gaaactaatg ttatataagg ctgggacaca ggcaatacca
     6841 ataatggtaa ccaaagtcat tggttttttg aaaatattct ttactttttg taacataagc
     6901 aactccttta gacatcgtgt ccaaaaactg ataaaataca ttatacaagt atcaatttca
     6961 aaatcaagtc ataagaactg tttttagaca ctgtgtctaa aaatgttcaa aaggagaaat
     7021 tatgggaaca gataatcgga aagaacgaac tcgacagaca attttagaag ctatggtaac
     7081 ctgcctggaa tcacaaggat ttaatgacat tacaaccacc cacctagccc agactgctgg
     7141 tatcagtcgt tccagttttt atacccatta taaggataaa tatgaattga ttgactccta
     7201 tcaacaggga ctttttcaca aattagaggc tatatttgac cgttatgatg gcaatcgcca
     7261 atcatcattt ttagaaattt tcgagttgct ctatcgtgaa aaattgcttt ctgccctact
     7321 tacccataac ggaactcaag aaatccaaaa ttttcttatc aataaagtcc gacttcttat
     7381 tgccaatgat ttagcggagc gcttaggaaa agagaattta tcacaactgg aaaaagaata
     7441 ccgtagtatt tatttttcac atgccttctt cggtatcatg caggtatgga taaaaaatgg
     7501 gaaacaagaa tcacctcaat tcatgacgga ttttctaatc aaaatgttac cgtaatcatt
     7561 attttctagc ttcacaactt aagaattatg gtataatagc tataccatgc aaacgttttc
     7621 ttaaaaggag ataatgaaat gattcaggca gaacatcttt caaaaaccta ttcaatcatt
     7681 gataaggaag tcggtctaaa aggctctatc aaggcctttt tcaagccaaa gaaaaagtca
     7741 atccctgctg ttcaagacat ttccttacag gtaggaaaag gagaaatcat cggctatatc
     7801 ggatccaacg gttctggtaa atccaccacc atcaaaatgc tgaccggcgt tctctatcca
     7861 gaccaaggct cagtccgaat caacggactc aatccgcaag aacaccgtaa agaagtcaat
     7921 aaacaaattg gagttctctt tggacaaaaa tctcacttgg attggaactt acctgtactg
     7981 gaatctttta tccttcacgc aaaaatttat gatgtcccag atgcgatttt taaggaaaga
     8041 ctagctgtct tgatgaatct attggacttg gctgatatta tgaagcaacc aatccgtaat
     8101 ctgtcactcg gtcaacgggt tcgctgtgaa tttgcggcta tctttatcca ccaacctgcc
     8161 gttgtctttt tggacgagcc gaccattggc ttggatgcca gcgtcaagga gaccattcgc
     8221 tccttcatcc gctatatgaa tcaagaatac cagaccacct ttttgattac ctcccacgat
     8281 atgaaggaca tcgagagcct ctgtgagcgg atttttatca ttgataaggg caagaaggtc
     8341 tacgatggtt cactgaccgt cctcaaggaa cgcttttcca cagttaaaac cattctcttc
     8401 tccacagaaa aaccaattga aaaagacttg cagttggatg gctgggagtt tgagcagttg
     8461 gatgacttcc attttgaaat ccattatcaa agcaagtttt ggaccagtgc ccaggtgatt
     8521 gagcaagttt tcaatcatta tgccattgaa gatgttacca tgaaggagct tgaaattgaa
     8581 accatggtcc gccaaattta tgaggagggc atccatgcgt aaatatctct acatgacccg
     8641 cctgaccatg atgaatgcca tgcagtacaa ggctttcttt ctagcgactt tcgtttcact
     8701 ggcagtgaag attttagtag ctctctatgt ctggaaaacc attttcttta cccagtcaga
     8761 agtcaatggc ttcaccctcc aaacctttac tacctacatc atctttgcca atctattagc
     8821 cagtttgaat tctttctcac ttggagaaga tttgtcctac agcattttaa aaggaagcat
     8881 tgcgggggaa tttctcagac cctattcctt tatcctagcc ctctttttca aagaccttgg
     8941 aaataagctc ttggaactga taaagtttgc catcgtattt atcggtatct tacttgttca
     9001 tcaagatttc tacctgcctg atggccagac cattttgctc tttctagtca gttcgattct
     9061 agggatgttc atcgttcaat tgctggatat ggcttttggc ttcttagcat tttttacggt
     9121 caatgcctgg ggagttatgc tcctacgaat gggacttttc aatctagctt ctggagcact
     9181 cttgccactc agcttctatc cacaggctgt ggaaaacttt ttgaaactcc ttccctataa
     9241 ttatgcagtt aacgttccag tttccatttt attgggacag gaaagcgatc taactgcttt
     9301 gggattgcaa gttatatgga tacccattct agcctgcttc atcgctgctc tttggtctca
     9361 ggccaagcgt cgtattgtca tttttggagg ttaacatgaa gaaatatatc agcctctatc
     9421 tatataacat caaggtctac atgatggccc agatgtcctt tcgggtggac ttcttcatcg
     9481 ggcttttctc ctctttgatt gaacaaattg tctacctaat tttcctcaac atcctctttg
     9541 gaaatattaa ggaaatcgct ggtttcaact acggtcaaat gcttttcatc tatggaatag
     9601 ccaccgtcgg acgctccatt cacttgatat tctttgacaa tctctggatg tttggcagtc
     9661 gctacatccg acaaggcgaa tttgaacgcc tcctcctcat gcctgtcaat cctctttttc
     9721 aactaatctg tgaacgaatt caaccacaag gaatcggaac aacgcttatc ggttcccttg
     9781 cactagtcca ggcttcaaat gagctaggca tggaatggag tcttgtaaaa ctagccttac
     9841 tcatctttat tgccatttgt atcggcctac tctatgcagc cattcaactc ggtccaactg
     9901 ctctggcttt ttggattgtg gaatcatttc ctttgactat gggaattttc gccctcaatc
     9961 agatggctca atacccactc aatatctatc caaaaatcat tcaaatcctg ctgatatttg
    10021 ttttccccta tgcttttaca gcctatttcc cagccctcta cttcttagac ctgtctatgt
    10081 ggggactggc tctgccactg gttgtcctga tcttatttac catcaactac aaactcttcc
    10141 gctatggtat gaccaagttc acgagtgttg gaaattaaaa aaagctagaa ttctctggat
    10201 tgagagcact agcttttttc tatatact
//
LOCUS       DASGAC010000070         9802 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.070, whole genome shotgun sequence.
ACCESSION   DASGAC010000070 DASGAC010000000
VERSION     DASGAC010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9802
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.070"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            3..1952
                     /gene="parE"
                     /locus_tag="U1335_001271"
     CDS             3..1952
                     /gene="parE"
                     /locus_tag="U1335_001271"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HEM5231757.1"
                     /translation="MAKKEIDINNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHM
                     VWEIVDNAVDEALSGFGDRIDVTINKDGSLSVSDRGRGMPVGMHATGKPTVEVIFTVL
                     HAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLE
                     KIGTAPKSKTGTKVTFMPDDTIFSTTDFKFNTIAERLKESAFLLKQVTMTLTDERTGE
                     QEEYHYENGVQDFVSYLNEDKETLTPVLYFEGEDAGFQVQVAMQYNDGYSDNILSFVN
                     NVRTKDGGTHETGLKLAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPE
                     EHLQFEGQTKDKLGSPLARPVVDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAA
                     RKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQ
                     AILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGSDFTLEDVNYDKIIIMTDAD
                     TDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKTEKIAYAWSDGELED
                     LRKDFGKGFILQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVSVLMGD
                     KVEPRRKWIEDNVKFTLEEATAFTK"
     gene            1976..2578
                     /locus_tag="U1335_001272"
     CDS             1976..2578
                     /locus_tag="U1335_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016176895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEM5231758.1"
                     /translation="MVLENKLGIENSAELARLEEQISKKKAAQLFETGQLFQIEVGTF
                     AGLAHIHQALFEEIYDFAGKIRDVNIAKDNFQFAPRIFLEQSLAYIDKLPHTTFDEIV
                     DKYADMNIAHPFHEGNGRSMRIWLDCMLRDSLGKVVDWNSIDKDEYFNAMVRSHVSTG
                     KLKYLLLHALTDDLGQATYFKGIDHSYYYEGYNLYRTEDL"
     gene            2611..3114
                     /locus_tag="U1335_001273"
     CDS             2611..3114
                     /locus_tag="U1335_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HEM5231759.1"
                     /translation="MPLRVKLNDRFQKRLSEWARKRKPFKNKQELEEKFDQALKIWQS
                     SKTRQHAENLLSEQGKLEHFLHSTERKLSRMPFGGDKFAAIPGLISMVRSYIRRDYSK
                     LPKGTILATIGALIYFFSPIDALPDFILGAGLLDDAFVLNACLKLVRSDVDDFRNWQA
                     SQWKVEE"
     gene            3141..3701
                     /locus_tag="U1335_001274"
     CDS             3141..3701
                     /locus_tag="U1335_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase"
                     /protein_id="HEM5231760.1"
                     /translation="MLEKVERFIAEINRIDREFSKEYFETGKVEKVNLKHTFSKVSTQ
                     PILSYRLNLHEAINDYLMRADVKDIAYFYRVKTSESILDKIERFKERNEGCPVNSILN
                     DIFGARMILTSEEIAEVMERLDDWQEKYGLKNWYLRDKDDYVGIHIYFKNKSNFYYPW
                     ELQLWDEKDVEGNIASHIKYKRKFVG"
     gene            3705..5729
                     /locus_tag="U1335_001275"
     CDS             3705..5729
                     /locus_tag="U1335_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEM5231761.1"
                     /translation="MDWKLESDVNDWVKGQLDRIGLRKLQDYNEESGMSSYMKEALRG
                     SAKTESKANFGKPDFHIEKYSRPVIFENKFSAKKLLAENKDGIKQDDSSVSAYAVNGA
                     LYYARNMIASGKYSEVFAIGVAGDNEENVSLKVYYVFGSALNAYKELTTVQTLDFLEN
                     ERSFETFYKNAVLTEEEKHQILIDSQVVLQSYAKKLNRLMHNHNITAPQRVLYVSGML
                     LAMQDIEMLTPNGDKIKLDDGLIPDNLLGKQVKDKHDGELIVTHISNFLENRGIEKTK
                     RDLMISSFKEISKDAQRDEKTDLDKEVAKLIDGQASVTKQIFTFIYEYIFKAIDGLGG
                     HIDIMGEMYSEFLKYALGDGKEIGIVLTPPYVTKMMSQILAIKKDNKVMDLATGSAGF
                     LISAMELMIDDANAIFGKATTAANEAIDALKKNNLLGVELNAEMFTLAATNMILRGDG
                     SSRIEKGSAFNRPESLFENFKADRLLLNPPFSYDENGLPFLEHGLDKMEKGGLGAIII
                     QDSAGSGKATKTAQSILKKHTMLASIKMPVDLFVPMAGVQTSIYIFEAKTPHDVERPV
                     KFIDFRNDGYKRAKRGISEMDSPVQRYQDIIKIYKAGSRAKVEADWDLDAVYIEDFIS
                     LNGNDWNFEQHQVIDTKPTLEDFKKTVADYLSWEVTQLLQQKGEDVTKKP"
     gene            5672..6874
                     /locus_tag="U1335_001276"
     CDS             5672..6874
                     /locus_tag="U1335_001276"
                     /inference="COORDINATES: protein motif:HMM:NF013579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEM5231762.1"
                     /translation="MGGDPTPPTKRRRRHKKALSPRLAKLDKEFEEAGGEWREYHLVE
                     LFGKSTRGKRLKSSDRVCGTLPFVTAGEENTGISAYIGNDVEIFRANSITIDMFGSAK
                     FRGYDFGADDHVAVVHTEHLSKAVCQFVAVAIHKSSYSGKFSYSRNFYAKDADELVIS
                     LPTINNNLAFSYMENYIKTLEAERIETLEAYLTVTGLKEYHLTKNDEKILDTFTKLTD
                     TESRVEYLGILSLSPVSMRELFPSIHQGRRLKKDDQIRGDLPFVMAGTTNTGIVGKIG
                     NDVRKFPKQSITIDIFGNTFYRGYEFGAGDDTGVFWNIENTQPKSLLYLKTIIEKQLL
                     GKYDFGHKLRASQTYDMEFQIPTQNNRPDYTFMSDFIKVIEKLVIKDLVEWTDKKIQA
                     TKEVVAQH"
     gene            7229..9682
                     /gene="parC"
                     /locus_tag="U1335_001277"
     CDS             7229..9682
                     /gene="parC"
                     /locus_tag="U1335_001277"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HEM5231763.1"
                     /translation="MSNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRI
                     LYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMH
                     GNNGSMDGDPPAAMRYTEARLSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFP
                     NLLVNGATGISAGYATDIPPHNLAEVIDAVVYMIDHPTASLDKLMEFLPGPDFPTGAI
                     IQGADEIKKAYETGKGRVVVRSRCEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDEVR
                     VNNKVPGIAEVRDESDRTGLRIAIELKKDSDEQTILNYLYKYTDLQINYNFNMVAIDN
                     FTPRQVGLQKILSSYIAHRREIIIARSKFDKEKAEKRLHIVEGLIRVISILDEVIALI
                     RASENKADAKENLKISYDFSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLA
                     AIIGDERTMFNLMKKELREVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTK
                     AGYIKRTSPRSFNASTLEEMGKRDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELT
                     DIRWKDIGEHLSQTLMNFDTNEEIIFAELVENFEEGTYFAVTKYGQIKRVERKEFTPW
                     RTYKSKSTKYAKLKDAEDVVITVSPVVLDDIMLMTEKGYALRFNIEEVPIIGAKAAGV
                     KAVNLKDGDVVAAAFISNTSSVYLLTQRGSLKRMATEEIPVTSRAKRGLQVLRELKSK
                     PHRVFAAGPVLTDQGDFDLFSTANEDETISQILHVQSKTGKLYEVDVTQLSLSERTSN
                     GSFISDTISDEEVFRAWID"
BASE COUNT         2951 a         1950 c         2307 g         2594 t
ORIGIN      
        1 ttttggctaa gaaagagatt gatataaata attacaatga tgatgccatt caggtattgg
       61 aaggcctaga tgccgtccgc aaacgtcctg gtatgtacat cggatccaca gatggaaatg
      121 gcttacacca tatggtctgg gagattgtcg ataatgctgt cgatgaagcc ttgtctggat
      181 ttggtgatcg gattgacgtg actattaaca aggatggtag cctgtctgtt tccgaccgtg
      241 gacgtgggat gcctgttggt atgcacgcaa caggcaagcc aactgttgaa gtcatcttca
      301 ccgttctcca cgcaggtggt aagtttggtc aagggggcta caagacctct ggtggtctgc
      361 acggggttgg ttcttcggtg gtcaatgccc tgtccagctg gttggaagtt gagattaccc
      421 gtgacggagc tgtttacaag caacgatttg agcagggcgg aaaaccagtc acgaccttgg
      481 agaagattgg caccgcacca aaatcaaaaa caggtacaaa ggtgaccttt atgcctgatg
      541 acaccatttt ctcaacgacg gattttaaat tcaacaccat tgccgaacgc ctgaaagaat
      601 cagccttctt gctcaagcaa gtcaccatga ccttgacaga tgagcggact ggtgagcagg
      661 aggagtatca ctatgaaaat ggcgttcagg actttgtatc ctacctcaac gaagacaagg
      721 aaactctgac acctgtcctc tatttcgaag gagaagatgc aggattccag gtccaagtgg
      781 ccatgcagta caacgacggc tattcagaca atatcctgtc ctttgtcaac aacgttcgga
      841 ccaaggacgg cggtacccac gaaacaggac tcaaactggc cattaccaag gccatgaacg
      901 actatgcccg caagaccaac ttgcttaagg aaaaggacaa gaacttggaa ggttctgact
      961 accgtgaggg tctgtcggca gttctttcaa tccttgtgcc agaagagcat ttgcagtttg
     1021 aagggcagac caaggacaag ctgggaagcc cgcttgctcg tcctgtggtg gacggtattg
     1081 tatcagacaa gctgaccttc tttctcttgg aaaatggcga gctagcatct aatctagttc
     1141 gcaaggccat taaggcccgt gacgcccgcg aggctgctcg taaggcccgt gacgaatccc
     1201 gaaatggtaa gaaaaacaag aaggacaagg ggcttctgtc aggtaagcta accccagccc
     1261 agtctaaaaa tccagccaaa aatgaactct atctagtcga gggagattcg gccggaggct
     1321 ctgccaaaca aggccgtgac cgcaagttcc aagccattct acctttgcgt ggtaaggtta
     1381 tcaataccgc caaggcaaaa atggcggaca tcctcaaaaa cgaagaaatc aacaccatga
     1441 tttacaccat tggtgcaggt gttgggtcag actttacgct ggaagatgtc aactatgaca
     1501 agattattat catgaccgat gcggatacgg atggtgcgca cattcagact cttttgctga
     1561 ctttcttcta tcgctatatg cgaccgctag tagaagcagg ccgagtttac atcgcccttc
     1621 cgcccctcta caagatgtcc aaaggcaagg gtaagactga aaagattgca tatgcttggt
     1681 ctgatgggga attagaagat ctccgcaagg attttggcaa gggctttatc ctccaacgct
     1741 acaagggtct tggtgagatg aatgccgatc agctctggga aacgaccatg aaccctgaaa
     1801 cccgtaccct catccgtgtc accattgaag acctagcccg tgctgaacgc cgtgtatccg
     1861 tcctcatggg cgacaaggtc gagccacgcc gcaagtggat tgaagacaat gtgaagttta
     1921 ccttggagga agcgacagct tttactaaat aatctcaggg aagttgaggt gcagtatggt
     1981 tttagaaaat aaattgggga ttgaaaattc ggctgaatta gcccgtcttg aagaacaaat
     2041 tagcaagaaa aaagcagctc aactgttcga aacaggccaa ctgttccaga tagaggtagg
     2101 aacctttgca ggtttggcac acattcatca ggccttgttt gaagagattt acgactttgc
     2161 aggtaagatt cgcgacgtta atattgccaa agataatttt caatttgccc ctcgtatttt
     2221 tctggagcag tcattggctt atattgacaa gctaccacat acaaccttcg atgagattgt
     2281 tgacaagtac gcagatatga acatcgcaca tccttttcat gaaggaaatg gtcgcagtat
     2341 gcgtatctgg ttggattgta tgctacggga tagtttgggc aaggtggttg attggaatag
     2401 cattgataaa gatgaatatt tcaatgccat ggtcagaagt catgtatcaa cggggaaact
     2461 caaatatttg ttgctccatg ctttgactga cgatcttggt caggctactt atttcaaagg
     2521 catcgaccat tcttattact atgaaggata caatctctat cgcacagagg atttgtaact
     2581 ctagcacaag caaactatgt gaggtgtttt atgccactaa gagtaaaatt aaatgatcgt
     2641 tttcaaaaac ggttgtctga atgggctcga aagcgcaagc catttaaaaa caaacaggag
     2701 ttggaagaga aatttgacca agcattgaag atttggcaat cttccaaaac tcggcaacat
     2761 gcagaaaact tgctatctga gcaaggaaaa ttagaacatt ttttacatag cacagaacgg
     2821 aaactgtctc gtatgccttt tggtggagat aagtttgcgg ctattccagg cttgatttcc
     2881 atggtgcgaa gctatatccg tagggattac agcaagttac caaaagggac aatcctcgca
     2941 actataggtg ctttgattta ttttttcagc cctattgatg ccttaccaga tttcatcctt
     3001 ggagcaggtc tacttgacga tgcctttgtc cttaatgcct gcctcaaatt agttaggtca
     3061 gatgtggatg atttcagaaa ctggcaagca agtcagtgga aggtggaaga gtagctctgc
     3121 tatgacaaaa ggagcagaaa ttgttagaaa aagtcgagcg atttattgct gaaatcaata
     3181 gaattgacag agagttttcc aaagaatatt ttgaaacggg taaggttgaa aaggtcaatc
     3241 tcaagcacac cttttccaag gtgtcaacgc aaccgatttt atcctatcga ctgaatttac
     3301 acgaggctat caatgactac ttgatgcgtg ctgatgtcaa ggacattgct tatttttatc
     3361 gtgtcaaaac ttcggaatct attttggata agattgagcg ttttaaggag agaaatgagg
     3421 gatgtcctgt caactccatt ctcaatgata ttttcggtgc tcgtatgatt ttgacttctg
     3481 aggaaatcgc ggaggtcatg gagcgtctgg atgactggca ggaaaaatat ggactgaaaa
     3541 actggtacct gcgtgataag gacgactatg tcggcattca tatctatttc aaaaataaga
     3601 gtaattttta ttatccatgg gaattgcaat tgtgggacga aaaagatgta gaaggcaata
     3661 ttgccagtca tatcaagtat aaaaggaaat ttgtggggta aaaaatggat tggaaattag
     3721 agtcagatgt taatgactgg gtaaaaggtc agttagaccg tattggattg cgtaaattgc
     3781 aagactacaa tgaagaatca ggtatgagct cctatatgaa agaggctctg agggggtctg
     3841 cgaagacgga gtctaaagct aattttggta aaccagactt tcatatagaa aaatatagtc
     3901 gccctgttat ctttgaaaat aaattctcag ctaaaaaatt actagctgaa aataaagacg
     3961 gtattaaaca agatgatagt tcagtttctg cttatgcagt gaatggtgct ctgtattacg
     4021 ctcgaaatat gattgcttct ggtaaataca gcgaggtctt tgcgattggt gtggctggtg
     4081 acaacgaaga aaatgtttct ctcaaagttt actatgtctt cggttctgct ctaaatgcct
     4141 ataaagaatt aacaaccgtt caaactcttg attttcttga aaatgagagg agttttgaaa
     4201 cgttctacaa gaacgctgtt ctgacagaag aagaaaaaca tcagatttta attgatagtc
     4261 aagttgtctt gcaaagctat gccaagaaac tcaatcgcct gatgcacaat cataatatca
     4321 ctgctccaca gagagttctc tatgtatctg gtatgctttt ggccatgcaa gatatcgaaa
     4381 tgcttactcc taatggtgac aaaattaagt tagacgacgg tctaattcct gacaatttat
     4441 tagggaaaca agtcaaagac aagcatgatg gcgaattgat tgtaacgcat atttcaaatt
     4501 ttctagaaaa cagagggatt gagaaaacca agcgtgactt gatgatttct tctttcaagg
     4561 aaatttcaaa agatgctcag cgtgacgaaa agacagacct tgataaagaa gttgccaagt
     4621 tgattgatgg tcaggcaagt gtgaccaaac aaattttcac ctttatctat gaatacattt
     4681 ttaaagctat tgacggttta ggtggccata ttgacattat gggggaaatg tattctgagt
     4741 ttctcaagta tgctctcgga gacggtaagg aaattggcat tgtcttaacg ccgccttatg
     4801 tgaccaagat gatgtcacag attttagcga ttaaaaaaga taacaaagtc atggacttgg
     4861 cgacaggttc agcagggttc ctgatttctg caatggaatt gatgatagat gatgctaatg
     4921 ctatctttgg taaggcgacc acggccgcaa atgaagctat tgatgcactc aagaaaaaca
     4981 atcttctcgg cgttgagcta aacgcagaga tgtttacttt ggcggcgacc aacatgattt
     5041 tacgtggtga tggttcaagt cgtattgaga aaggttcagc ctttaaccgc ccagaaagtc
     5101 tctttgaaaa cttcaaggct gaccgtctgt tgttgaaccc acctttttct tatgatgaaa
     5161 atggactgcc tttcttagaa catggtcttg ataagatgga aaaaggaggc ttaggtgcga
     5221 ttatcatcca agattcagca ggttctggta aagctaccaa gacagctcaa tctattctta
     5281 aaaagcatac catgcttgcc tcaatcaaga tgccggttga ccttttcgtg ccaatggcag
     5341 gggtgcagac gtcaatttat atttttgaag ctaagacccc tcacgatgta gaacgccctg
     5401 tcaaattcat tgacttcaga aatgatggct acaagcgtgc taaacgtggg atttcagaaa
     5461 tggatagccc tgttcaacgt tatcaagaca tcatcaagat ttacaaggca ggcagtcggg
     5521 ctaaagttga ggcggactgg gatttggatg ctgtctatat agaggatttt atcagtctaa
     5581 atggtaatga ttggaatttt gagcaacacc aagtcattga taccaaacca accttagagg
     5641 atttcaaaaa gacagttgct gactaccttt cttgggaggt gacccaactc ctccaacaaa
     5701 aaggagaaga cgtcacaaaa aagccctaag ccctcgccta gctaaactag acaaagagtt
     5761 tgaagaggct gggggagagt ggcgggagta tcatttagtt gaattattcg ggaaatcaac
     5821 aagaggaaaa cgactaaaaa gttccgatag ggtctgtggc acattgcctt ttgtgacagc
     5881 aggagaagaa aatacaggaa tttctgctta tattggaaat gatgtcgaga tttttagagc
     5941 aaacagtata actattgata tgtttggttc tgctaaattt agagggtatg attttggtgc
     6001 agatgaccat gttgcagtag tacatactga acatctttcc aaagcagttt gccaatttgt
     6061 tgccgttgca atccataaat catcttattc tggaaaattt agctattcac gtaattttta
     6121 tgctaaagat gctgatgagt tagtaatttc tttaccaact attaacaata atttggcatt
     6181 ttcatatatg gaaaactaca taaagacgct cgaggctgaa cgcatcgaga cgctcgaggc
     6241 ttacctaaca gtaactggac ttaaagagta tcatcttaca aaaaatgatg agaaaatact
     6301 tgacacattc acaaaactga ccgatactga gagtagagta gagtatttgg gtatattgtc
     6361 gctatctcca gtttcaatga gagaactttt tccgtcaatc catcaagggc gacgcttaaa
     6421 gaaagatgat caaattcgag gtgacttacc atttgttatg gctggtacaa ccaatacagg
     6481 catagttggt aagattggca atgatgtaag aaagtttcca aaacaatcaa ttacaattga
     6541 tatttttgga aatacatttt atcgtgggta tgaatttgga gctggtgacg atactggtgt
     6601 attttggaac atagaaaata ctcaaccgaa atctttattg tatttgaaaa caattattga
     6661 gaaacagttg cttggtaagt atgattttgg acataaactt agggcatcac aaacatacga
     6721 tatggaattt caaattccta cccaaaacaa tcgacctgat tataccttca tgtccgactt
     6781 catcaaagtt attgaaaaac tggtgattaa agatctagtc gaatggacag acaagaaaat
     6841 tcaagcgaca aaagaggttg ttgctcagca ttaacatttt actacggtat gcaggcgagc
     6901 gtgagcgagc ccaaaatgga taatcgccgc cgtagtgaaa gaagctaata accttgttat
     6961 tagcttcagg gaagttggaa gacttcagtt tccaacttag gaatggaact ccgcaggagg
     7021 tctcttccgt ccccactacc taaggcgatt atcaaaaaaa agtaaaaaaa ttttttcgac
     7081 aagaaacaaa gaaaggaatg ttcggttgct agaaacaact gaacacgccc taaagactgt
     7141 gtcaaaaaga taaatcgtct ggaaaatcag gattttctgc cgatttccta ttttgacttt
     7201 gtcttttacg ggctttgtat cttaatttat gtcaaacatt caaaacatgt cccttgagga
     7261 catcatggga gagcgttttg gtcgctactc caaatacatt attcaggagc gggccctgcc
     7321 ggacattcgt gacggtctca agcccgtgca acgtcggatt ctttattcca tgaataagga
     7381 cggcaatacc tttgacaagg gttaccgcaa gtccgctaag tcagtcggaa atatcatggg
     7441 gaatttccac ccgcacggtg actcctctat ttacgatgcc atggtccgca tgagtcagga
     7501 ctggaagaac cgcgagattt tggtggagat gcacggaaac aatggttcca tggacggcga
     7561 tccgccagcg gctatgcgtt acaccgaagc tcgcctgtcg gaaatggctg gctatctcct
     7621 agccgacatc gagaaaaaga ccgtgccttt tgcctggaac tttgacgata cggaaaaaga
     7681 acccactgtg ctaccagctg ccttccctaa tctcttggtc aatggagcga cagggatttc
     7741 agcagggtac gcgactgaca tcccgccaca taatctggcg gaggtcatcg atgccgttgt
     7801 ttacatgatt gatcatccga cagctagctt ggacaagctc atggagttct tgcctggacc
     7861 agacttccca acaggtgcca ttatccaagg ggctgacgaa atcaagaagg cctatgaaac
     7921 tggtaagggc cgtgtcgtag ttcgtagccg ttgtgaaatc gagcaactca aggcaggtaa
     7981 gaaacagatt gtcattactg aaattcctta cgaggtcaac aaggctgttt tggtcaagaa
     8041 gattgatgag gttcgtgtca acaacaaggt gcctggtatt gctgaggtgc gtgatgagtc
     8101 agaccgtaca ggtctgcgga ttgccattga gctgaaaaaa gacagcgatg agcaaaccat
     8161 tctcaactac ctctacaaat acaccgactt gcaaattaat tacaacttca acatggtggc
     8221 cattgataat ttcacgccgc gtcaggtcgg tttgcagaag attctgtcta gctacatcgc
     8281 ccaccgtcgt gagattatca ttgcccggtc taagtttgac aaggaaaaag cagaaaaacg
     8341 tctccatatt gtagaaggtt tgattcgtgt tatttctatt ttggacgagg ttattgccct
     8401 tatccgtgct tctgaaaaca aggctgacgc caaggaaaac ttgaaaatca gctatgattt
     8461 tagtgaggaa caggctgagg ctatcgtgac cttgcaactt taccgtttga caaacaccga
     8521 tattgtgacc ttggagaatg aagaagcagc tctacgcgag cagattcaga ccttggcagc
     8581 cattattggc gatgagcgga ccatgttcaa tctcatgaag aaggaactgc gtgaggtcaa
     8641 aaagcagttt ggcaatcctc gtttgagtga gttacaagat caggcagaaa cgattgaaat
     8701 tgataccgca agtctaattg tagaagaaga aacctttgtc agcgtgacca aggcaggtta
     8761 catcaaacgg acaagtccgc gttctttcaa tgcctcaacg ctggaagaaa tgggcaagcg
     8821 ggacgatgac cagctgattt tcttgcagaa tgccaagaca actcagcacc tcttgctctt
     8881 taccaatctt ggaaatgtca tctaccgacc tgtccatgaa ttgacagata ttcgttggaa
     8941 ggatattggt gaacatctga gccagactct catgaacttt gacaccaatg aagagattat
     9001 cttcgctgaa ttggttgaga attttgaaga ggggacttat ttcgcggtga caaaatacgg
     9061 tcaaatcaaa cgtgtggagc ggaaggagtt tactccttgg cggacttaca agtccaagtc
     9121 aaccaagtat gccaaactca aagatgcgga ggatgtggtc attactgtat cacctgtggt
     9181 cttggacgac attatgctca tgacagaaaa gggctacgct ctgcgattta acatcgaaga
     9241 agtgccaatc atcggtgcca aggcggccgg tgtcaaggcg gtcaacctca aggatgggga
     9301 tgtggtggct gcggccttta tcagcaatac cagctccgtc tatctcctga cccagcgtgg
     9361 tagccttaag cggatggcga cggaggaaat ccctgtaact agccgtgcca agcgtggttt
     9421 gcaggttctg cgagagctca agtctaaacc gcaccgtgtc tttgcggcgg gtccagtctt
     9481 gacggaccag ggggattttg acctctttag cacagcaaat gaagatgaaa cgatcagtca
     9541 aatccttcac gtgcagtcca aaacaggcaa actctatgag gttgatgtga cccagcttag
     9601 cctgtctgaa cgcactagca acggtagctt tatctcggat accatttctg atgaggaagt
     9661 gtttagagct tggatagact aaaaaagatg ggagtgggaa agaactcgac taagtcaaaa
     9721 agagttcgtc ttcccacccc cgcacagttg attaggttag atttggagtg taaaacacga
     9781 acaaatctac caatcaacca ct
//
LOCUS       DASGAC010000071         9755 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.071, whole genome shotgun sequence.
ACCESSION   DASGAC010000071 DASGAC010000000
VERSION     DASGAC010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9755
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.071"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            49..2543
                     /locus_tag="U1335_001278"
                     /pseudo
     CDS             49..2543
                     /locus_tag="U1335_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735684.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pneumococcal-type histidine triad protein"
     gene            complement(2840..5014)
                     /locus_tag="U1335_001279"
     CDS             complement(2840..5014)
                     /locus_tag="U1335_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEM5231764.1"
                     /translation="MKKLIDYVKKSGQTRLGFVLILLIIYWLKTLWAYYVDFNLDTQG
                     FFQNFIAIMNPLPVGILLLGLSLYIKNTKVFYSVAMTIYIVLFAWLFSNAVYYREFSD
                     YISISTMMATSSVSAGLGEAALKLFRLWDIVYFLDFIAFGFLVYRKAFHWDKTPFHKK
                     SSFAITAFSVLLFSINLFLAEIDRPELLTRGFSNTYIVRALGLPAFLGYNANQTYNAH
                     KDRSGATATDLEPVKQYITEHYAQPNDNYFGIAKGRNVIYLHLESLQQFVIDYKLNVN
                     GVEYEVTPFLNSLYHSSSTLAFSNFFNQVKAGKTSDAETMIETSLFGLNQGSFMVQYG
                     GSNTQQAAPYILSQNGGYTSAVFHGNAASFWNRNNTYKQWGYNYFFDQSYFSKATAEN
                     SFQYGLNDKIMFADSIQYLEHLQQPFYTKFITVSNHYPYTTSLIGDEIGFPLANTDDE
                     TINGYFATANYLDASIKAFFDYLKATGLYENSVIVLYGDHYGISNSRNPDLAPLIGKD
                     SQTWSDFDNAMMQRVPYMIVVPGMTNGGIFDTYGGEIDALPTLEHLLGIKSDNYLQVG
                     QDLLSSQHSQIVALRTAGSFITPKYTSYEGKIYYTETGLEITNPDEITQKEIDAIKEA
                     TAAQLATSDAIQTGDLIRFFDNGLPALDSSQYNYIDSLAAEIALENKLGTQSTSLYSK
                     NGNKSTIELFKAPSYLELHGSTPATSTSNTGTSSTSTSSNSQ"
     gene            5131..6294
                     /locus_tag="U1335_001280"
     CDS             5131..6294
                     /locus_tag="U1335_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HEM5231765.1"
                     /translation="MKIKVNRIAEQKINRGIQLLDSADFSGFSFDEDRLAVLYSESGS
                     YLGQAYLSKQNKGIGWLFSRSNQDLTMDFFVKLFVDAKQKRQHFYQSEMTNAFRLFNQ
                     DGDNFGGMTVDLYDEYAVFSWYNTFIYSVKEMIVVAFQQVFPEVRGAYEKIRFKGLAF
                     ESAHLYGEEAPEYFTVLENGVHYQVFMNDGLMTGIFLDQHEVRGSLVDGLAAGKSLLN
                     MFSYTAAFSIAAAMGGAGETTSVDLAKRSRELSKAHFKVNSLDLDNHHFVVMDVFEYF
                     KYAKRKGLTYDVIVLDPPSFARNKKQTFSVAKDYHKLISQSLEILNTGGTIIASTNAA
                     NVSVEKFKRQIEKGFGVRKHRYEASYRLPADFVINKNDESSNYLKVFTIQVDK"
     gene            6291..6965
                     /locus_tag="U1335_001281"
     CDS             6291..6965
                     /locus_tag="U1335_001281"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HEM5231766.1"
                     /translation="MKIVVPIMPRNLEDVEAIDVERLAEADIVEWRADYLPKDDILRV
                     APAIFEKCNGKEVVFTIRTTREGGHLDLDDQEYVNLIKEVAALYQPDYIDFEYYSYKS
                     VFEQMLEFPNLVLSYHNFEETPSNYMEIMSELTSLSPAVVKMAVMAKTEQDVLDVMNY
                     TRGFKSLNTEQTFATIAMGELGKLTRIAGVITGSCWTFASLDETSAPGQMSLGNTRKF
                     LEILEN"
     gene            6968..8134
                     /gene="aroC"
                     /locus_tag="U1335_001282"
     CDS             6968..8134
                     /gene="aroC"
                     /locus_tag="U1335_001282"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002997861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEM5231767.1"
                     /translation="MRYLTAGESHGPRLTAIIEGVPAGLPLTAEDINEDLKRRQGGYG
                     RGSRMQIETDRVEITAGVRHGKTTGAPITLNVTNKDHQKWLDIMAVEDIEEKLKSKRR
                     IKHPRPGHADLVGGMKYRFDDLRNSLERSSARETTMRVAVGAVAKRILVELDIEIANH
                     VVVFGGKEIDVPDGLSVAEIKERAAQSEVSIVNQEREEEIKAYIDQIKRDGDTIGGVI
                     ETVVGGVPAGLGSYVQWDKKLDAKLAQAVVSINAFKGVEFGVGFQAGYLKGSQVMDEI
                     LWSQENGYTRRTNNLGGFEGGMTNGEPLIIRGVMKPIPTLYKPLMSVDIDTHEPYKAT
                     VERSDPTALPAAGVVMESVVATTLATEILEKFSSDNMEELKAAVASHRDYVKNF"
     gene            8142..9245
                     /locus_tag="U1335_001283"
     CDS             8142..9245
                     /locus_tag="U1335_001283"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HEM5231768.1"
                     /translation="MKKTILIVGLGLIGSSLALCIRKDHPDYHLIGFDPNEQSCQIAL
                     GKGMVDEVSTELEGVAKQADVILLCVPIQVSLRLIEEFSALELKDTVLITDAGSTKSA
                     IVATAEEHLAPRKINFIGGHPMAGSHKSGASAADLHLFENAYYIMTPCQATKQDAVPR
                     LTDLLSGTGARFVQIDAAEHDRVTSQISHFPHVLASSLMHQAGEYAQDHPFTNNFAAG
                     GFRDMTRIAESEPSMWTSILLTNADSILNRIEEFQARLSEISDVLRSGDQKAIWDFFD
                     KGRQTRKAMEIHKRAGVDSFYDLFLSVPDEEDTILKVLEVLRGISIVNIRINEENRED
                     IHGILQITFKNKGNLEDAAKRLREQTTYKIHLD"
     gene            9255..9593
                     /locus_tag="U1335_001284"
     CDS             9255..9593
                     /locus_tag="U1335_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbF/YmcA family competence regulator"
                     /protein_id="HEM5231769.1"
                     /translation="MSTNIYDIANELERAIRNLPEYKAVEAVKVSVEGNSEAKEILES
                     YISFQKEIQSKLQAGEIPTEADQKKMLDFNKKVQENPLLTEYFSKQQQLGTYVADLER
                     IIFKPLNELL"
BASE COUNT         3048 a         1641 c         2198 g         2868 t
ORIGIN      
        1 catgtcaata atataaatat aatagtaagt aaggagagaa acatagatat gaaacaaggt
       61 aagactttgc tttatgtagc aggagtatcg cttatttgtg ctgtagcatt ggtaacctat
      121 caagtgtcaa attataaaga gcaatcgagc catcaaaaaa taacaagcat agaaacatcg
      181 caatcaaagc aatcaagaga gattccttca gatccgaaaa aggaagttcc agggattgat
      241 aaggcgacag atgatggttt tttactcact gatgagtcac aaattgagga aaaaactgat
      301 ttaggaatta ttgtcaatca tggtgatcat aagcattttt tcttttactc agatttaaag
      361 aatacaaaat ggtcctattt aattcctgaa aactatcaag aaaaaaacat tcttctcaac
      421 ctaagagaaa tcaattatcg tcatgctcga agcagaccga agatgaatac atttttgatc
      481 ctaaagatat tgtcgcagag gatgcaaatg gctatactgt tcggcacggg gatcattatc
      541 actatatttt aaaatcaagc ttaggtggta cgacacacag gcaattgacc tccggtagtc
      601 gtcaatcgtc aactcttcct gtcgttcacc gacaggaagg gattccaggg attgattttc
      661 aaacgagtga tggtttcttg tttgatgggc aaaatatcag cggtgtaacg gaaaccggga
      721 ttctagtaag gcatgggaaa catttgcatc ttattcattt tgaaacattg aaaaagagta
      781 aatggtctta tcttgtgaat cagtataaac caaatgttga atcggataag aagccattgt
      841 ctgaggtaga aaatgctgag tatcaaacca aattggacta cttagcaaaa gaactgaatt
      901 tagagccgtc acattttaag aaagtcatcg ttgacggtca aattggatta gagtatccgc
      961 atggagatca cacacacatt gttttattaa aggaaattga tacaaggaag ccgtttgaaa
     1021 gtccagagga tcatattctt aagcaaaagg atggagaaac tcttgaacag agaaaagaac
     1081 gtctcattaa gcagtacatg gagcgtttta aagtcaagcg tgaggacatt acaattgacg
     1141 ggaactatat gagtgtacgc catggggacc atgcgcacgt ttataaaatt gatcctagtt
     1201 tgccagatga tcctgagcgt gatgttaaga ccgaaacggt aaatcttgct attgagaaac
     1261 aattagtata tggacctttt tatacagaag gttcaacaga aaatttaaca cgtaatggtc
     1321 tccatcaaaa gtatcgtcca gaaggtcttc aggatattaa aaatttcatt ctagtaacat
     1381 tcagtacaaa tagtgatttt ggtgattttg tcgttaatgg taaaaaaacg aagagagttt
     1441 attatttggt tcgtaaagat ttaaattggg aggatttgaa catcgcctat ccgcagaccc
     1501 ttcaacaaaa gggacgcgtc tttaatggtt ggaatgctac tttgccaaag tctggcaaga
     1561 tggcaagaga acatcaaagt ttttatgctg attttgataa tgtttatcgt aagccgacaa
     1621 aaaatattta cactccaagt gatgatgttt caaatattga tctatcagac tatgtacctg
     1681 ttaaatatag tgcgatagct aatggtcgtt taaaattaaa tggtgagatt cgagcagggt
     1741 tcatatactt tgtgaaatct gacttaactt ggaaacaagc taaggagcag gggcttgttg
     1801 taccagaacc ggttccaagt aaagattatg aattcatcga gtttaggaca gttattaccg
     1861 gtggagaaaa agatacagat tatgtcagtg ccacaacgag cttggcagca tttgggacaa
     1921 cagctcctcg tatcgggcct tacattgcta acaatacgga taatccaacg gacatcaatg
     1981 atccaagtag acatccaaat taccattggc atgatccaaa gaattatgta gctcttgcat
     2041 ttcgagcagg tgacggcggt caacttcaga cccatttggg aactagtaaa acagttgttt
     2101 accttgttag aaaagggtta acattgaacc aagctggaat ttttccgcca tctttgaaga
     2161 gtgatacagg ttataaacga gattatacaa aacctgttat tccaaatgta acatgggaca
     2221 cacctatttt ggaagatact gtctacgata ttcatttcga taaagttgaa agtgatagca
     2281 aagatgggac ggttgagcca ggtgatactt ggctgcctgg gaatccattg ccgaatactc
     2341 cagatgtccc gaatggagaa gaggatgcag acggctggtt agatgatttg ttgacacctg
     2401 gttcagaagt agaaactgta acagacattg aaactacaac agaagataca aaagcaactg
     2461 aaagtagtac tgttgcaccc atagatgtcc ctaagaatcc atcagcaggg gaagagtcta
     2521 gtgaggattc tatatttcct tgatgcaata gagaggagtg atttgaaata gtggtctaat
     2581 actcttcgaa aatcaaaatc agacgttgtt gacttgattt gatgagtgaa aggctccagt
     2641 ggagcctttc agcctgttac cttgaaacaa aatagtaaca gggttctatc tgctaagtag
     2701 aaacgaacta cgttcgctct atctccaacc tccaaaggtt ccccaaacct ttggagctag
     2761 tctgtttttg attttcattg agtataaaaa ggcttagaat caatgtagta actgacatga
     2821 ttctaagcct tttagtgtat tactgcgaat ttgaactggt acttgttgag ctagtaccag
     2881 tatttgatgt gctagtagca ggtgtactac cgtgaagttc taggtagctt ggtgctttaa
     2941 atagttcaat tgttgactta ttgccgtttt tactatacaa acttgtcgat tgtgtaccaa
     3001 gtttattctc cagagcaatc tcggcagcca atgagtcaat gtagttatat tgacttgaat
     3061 ccaaggctgg caatccattg tcgaagaatc ggataagatc accagtttga atggcatcgc
     3121 tagtcgctag ttgtgctgcg gtagcttctt taattgcatc aatttctttc tgagttatct
     3181 catctggatt tgtaatttca agaccagttt ctgtatagta gattttacct tcgtagctag
     3241 tgtattttgg tgtgatgaaa ctgccagcgg ttcgaagagc cacaatttgg ctgtgttgac
     3301 tagaaagtag gtcttgacca acttgaagat agttatcgga tttgattcct aaaagatgtt
     3361 cgagagtagg aagtgcatca atctcaccac cgtaggtatc aaaaatcccg ccgttggtca
     3421 ttccaggtac aacaatcata tatggaacac gttgcatcat ggcattgtca aaatctgacc
     3481 aagtctgaga atcttttcca atcaacggtg ccaagtcagg attgcgtgaa ttagaaattc
     3541 catagtgatc accatagagg acgatgacgg agttttcgta caagccagtc gcttttaagt
     3601 aatcgaaaaa tgcctttatg gacgcatcga gatagttggc agtagcaaaa tagccattaa
     3661 tggtttcatc atctgtattg gctaatggaa agccaatctc atccccaatc aagctggttg
     3721 tataggggta gtggttggaa actgtgataa atttggtata gaagggttgc tgtaaatgtt
     3781 ccagatattg gatagagtcg gcgaacatga ttttatcatt cagaccgtat tggaatgaat
     3841 tttcagcagt ggctttagag aaataggatt gatcaaagaa gtaattgtaa ccccattgtt
     3901 tataggtgtt gttcctattc cagaaactag ctgcgttacc gtggaataca gcagatgtat
     3961 agccaccatt ttgagagaga atatatggtg cagcttgctg ggtattgctt ccaccatatt
     4021 ggaccatgaa agagccttga ttgagtccaa aaagtgaggt ttcaatcata gtttcggcat
     4081 cagaggtttt acctgccttc acttggttga agaaattaga aaaggcgaga gtagagctgg
     4141 aatgatacag agaattgagg aaaggtgtga cttcgtattc gacaccgttg acgttcaact
     4201 tatagtcaat aacaaattgt tgtaagcttt ctaggtggag atagataaca tttcgtcctt
     4261 tggcaatacc gaagtagttg tcattcggct gagcataatg ttctgtaata tattgtttta
     4321 caggctccaa atctgtagct gttgctccag agcgatcctt atgggcattg taggtttgat
     4381 tagcattgta gccaaggaaa gctggtaacc caagggctct gacgatataa gtattagaaa
     4441 atcctctcgt aagtagctca ggtctatcaa tttctgctaa aaagagattg atagagaata
     4501 ataatactga aaaggctgtg atggcaaagc tagatttttt atgaaatgga gttttgtccc
     4561 agtgaaatgc cttacggtag actaagaaac caaaagctat aaaatcaaga aaatagacaa
     4621 tatcccatag cctaaataac ttaagagctg cttcccctag tccagcagat acgctagagg
     4681 tagccatcat ggtagaaatg gagatataat cggaaaattc tctataatag actgcatttg
     4741 aaaagagcca ggcgaaaaga acaatataaa tggtcatcgc tacactatag aataccttcg
     4801 tattctttat ataaagcgag agaccaagca ataaaattcc tactggtaga ggattcataa
     4861 tagcgataaa attttggaaa aatccttggg tatctaaatt aaaatcaaca tagtaggccc
     4921 agagtgtttt gagccagtaa atgattagca aaatcaagac gaagccaagt cgagtttgtc
     4981 cgctcttctt gacgtagtca attagttttt tcacaataaa acctcatggt cctttctaaa
     5041 agcttagttc attataccat aattttaaaa taagcctcaa agtttagagt ttttttggca
     5101 tagtatgaag aaacatgtta taataattct atgaaaataa aggtaaaccg tattgcagaa
     5161 cagaaaataa acagagggat tcaactcttg gatagcgctg atttttcagg cttttcgttt
     5221 gatgaggaca ggctggctgt tttgtattca gagtcgggaa gctatttggg ccaggcttat
     5281 ttgtccaaac agaataaggg aataggctgg ctgtttagca ggagcaatca agacttgacc
     5341 atggattttt ttgttaaatt attcgtggat gctaaacaga aacgtcaaca tttttatcaa
     5401 tctgagatga cgaacgcttt tcgtttattt aatcaagatg gagataattt tggtggaatg
     5461 acggttgact tgtatgatga atacgcagtt ttttcatggt ataatacctt tatttattct
     5521 gttaaagaga tgattgttgt tgcctttcaa caggtatttc cagaagtaag aggagcttat
     5581 gagaagattc gttttaaagg tttggccttt gagtctgctc atctttatgg agaagaagcc
     5641 cctgagtatt tcactgtgtt ggaaaatgga gttcactatc aggtctttat gaatgatgga
     5701 ctgatgacgg gaatcttttt ggatcagcat gaggtacgtg gttccttggt ggatggcctg
     5761 gcggcaggca agtcactttt gaacatgttt tcgtatacgg cagcattttc tattgctgct
     5821 gctatgggcg gagcagggga aacgacttct gttgacttag ccaaacgctc gcgagaactt
     5881 tctaaagctc actttaaggt taatagttta gacttagata atcatcactt tgtggtaatg
     5941 gatgtatttg aatatttcaa atatgccaaa cgtaaaggct tgacttatga tgtgattgtc
     6001 ttggatccgc caagctttgc acgaaataag aaacaaacct tttcagtagc caaagattat
     6061 cacaagttga tttctcaatc tttggaaata ctaaatacag gtggaactat tatcgcttcg
     6121 accaacgccg caaatgtttc tgttgaaaaa tttaagcggc agattgaaaa aggttttggt
     6181 gttagaaaac accgttatga ggcaagttat cgcttgccag ctgattttgt aatcaataaa
     6241 aatgatgaaa gtagtaatta cctaaaggtc tttacgatac aggtagataa atgaaaatag
     6301 tagttcctat tatgcctaga aatctggaag atgtagaggc cattgatgta gaacgtctag
     6361 cagaggcaga tattgttgaa tggcgagcag actaccttcc gaaagatgat attttaagag
     6421 tagcacctgc tatatttgaa aaatgtaatg gtaaggaagt ggttttcacc attcggacaa
     6481 cacgtgaagg tggccacttg gatttggacg atcaagaata tgtcaattta atcaaagaag
     6541 ttgcagcgct ttatcagcca gattatattg attttgaata ttattcttat aagtcggttt
     6601 ttgagcagat gttggagttt cctaatcttg tgttgagtta tcataatttt gaggaaacac
     6661 cgtctaatta tatggaaatc atgtctgaac taactagcct gtcaccagct gttgttaaaa
     6721 tggctgtaat ggctaagaca gagcaggatg tcctagatgt tatgaattat actcgtggtt
     6781 ttaaatcgct gaacaccgag cagacatttg cgacaatcgc tatgggtgaa ctagggaagt
     6841 taacgcgtat tgctggtgtg attacaggat cctgctggac ttttgccagc ttagatgaaa
     6901 catctgcacc tggacagatg tctttaggca atactcgtaa gtttttggaa attttggaga
     6961 attaagtatg cgttatttaa cagctggtga gtctcatgga ccacgtctaa cagccattat
     7021 tgagggagtt ccagctggtc ttcctttaac agctgaggat attaatgaag atttaaaacg
     7081 tcgccagggg ggatacggtc gtggtagtcg gatgcagatt gaaacagatc gcgtagagat
     7141 tacggctggt gttcgtcacg gtaagacaac aggtgccccg attacattga atgtgaccaa
     7201 caaagaccat caaaaatggt tggatattat ggcagttgag gatatcgaag agaagctcaa
     7261 aagtaagcgt cgtatcaaac atccacgacc aggacatgct gacctagttg gtggtatgaa
     7321 gtatcgcttt gatgatttgc gtaattcctt ggagcgttct agtgcgcgtg agacaactat
     7381 gcgtgtggct gttggtgcgg ttgccaaacg gattttggtt gagttggata ttgaaattgc
     7441 taaccatgta gtcgttttcg gagggaagga aattgatgtc ccagatggtt taagcgtagc
     7501 agaaatcaaa gagcgtgcag cccagtcaga agtatccatt gtcaaccaag agcgtgaaga
     7561 agaaatcaaa gcctatattg atcaaatcaa gcgagatgga gatactattg gcggagtgat
     7621 tgagactgtt gttggaggag ttccagctgg cttggggtct tatgtgcaat gggataaaaa
     7681 gttagatgca aaattagcgc aggctgttgt ttcaatcaat gcttttaagg gagtagaatt
     7741 tggagtaggc ttccaagctg gttatctcaa agggagccaa gtcatggacg aaattctctg
     7801 gtctcaagaa aatggatata cacgccgaac caataatcta ggtggtttcg aaggtggtat
     7861 gaccaatggc gagcccctaa tcattcgtgg tgttatgaaa ccaattccga ccctctataa
     7921 gccattgatg tcggttgaca ttgatactca tgagccttat aaagctactg tggaacgttc
     7981 agatccaacg gctctcccag cagctggtgt agtcatggaa tcagtcgtag ctacaactct
     8041 agcgacagaa atcctagaga agttctcttc cgataatatg gaggaattga aagctgcagt
     8101 agccagtcat cgcgactatg tcaaaaattt ctaggtaatt aatgaaaaaa acgattttaa
     8161 ttgtaggtct agggttgatt ggaagttcac ttgcgctctg tattcgcaaa gaccatcctg
     8221 actatcacct cattggcttt gatcctaacg aacaatcatg ccaaattgcc ttgggcaagg
     8281 ggatggttga tgaggtatca acggaattgg agggtgtagc aaagcaggct gatgtgattc
     8341 ttctttgtgt tccaattcaa gtttctttgc gtttgattga agaatttagt gcccttgaat
     8401 tgaaggatac ggtcttgatt acagatgcag gttcaacgaa gtctgcaatt gtggctactg
     8461 ctgaggaaca tttggcgcca agaaaaatta attttatcgg tggacaccct atggcaggta
     8521 gtcataaatc tggtgccagt gcagcagatc tccatctatt tgagaatgct tactacatta
     8581 tgacaccatg tcaggctacc aagcaggatg cggttccccg attgacagac ttgttatctg
     8641 gaacgggggc acgttttgtt cagattgatg cagcagaaca tgaccgtgtg accagtcaaa
     8701 tttcacattt tccacacgta ttggcttcta gtttgatgca tcaagctggt gagtatgctc
     8761 aagatcatcc ctttacgaat aattttgcag ctggaggatt tagagatatg acacggattg
     8821 cggaaagtga gccgagcatg tggactagca ttttgctaac caatgcagat tctattctaa
     8881 atcgaatcga ggaatttcaa gcacgtcttt cagaaatttc agatgtgctc agatctggcg
     8941 atcaaaaagc aatttgggac ttttttgata agggacgtca aactcgtaaa gccatggaaa
     9001 ttcacaagcg tgcaggtgtt gattctttct acgatttatt ccttagtgtt cctgatgagg
     9061 aagatacgat tttgaaggtt ttggaagtct tacggggtat ttccattgtc aatattcgta
     9121 tcaatgaaga gaaccgtgaa gatatacacg gtattttaca aattacgttt aaaaacaaag
     9181 gaaatttgga agacgctgcg aaacgtttaa gagagcagac gacttacaaa atccatttag
     9241 attaggagaa aaatatgtca acaaatatct atgatatagc aaatgaattg gaacgtgcaa
     9301 tccgtaacct gcctgaatat aaggcggtgg aagctgttaa ggtctcagtt gaggggaatt
     9361 cagaagccaa agaaatattg gaaagttata tttctttcca aaaagaaatc caatctaaat
     9421 tgcaggctgg tgaaattcct actgaagctg accaaaagaa aatgttggat ttcaacaaga
     9481 aagttcagga aaatccactt ttgacggaat atttcagcaa gcaacaacag ttgggaactt
     9541 atgtagctga tttggaacgt atcatcttca aacctctcaa cgaattgttg taatatattt
     9601 atatttgata ggagcaggtg ttaggttatg gattgacgcc tagtatacac tgcttacgta
     9661 gagttcttat ctccaagtac agattcagaa acggtacttt ggggagtaag aactcttttt
     9721 tctaccttct ccagcatcca tttcttataa agtta
//
LOCUS       DASGAC010000072         9715 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.072, whole genome shotgun sequence.
ACCESSION   DASGAC010000072 DASGAC010000000
VERSION     DASGAC010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9715
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.072"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            16..1257
                     /locus_tag="U1335_001285"
     CDS             16..1257
                     /locus_tag="U1335_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HEM5231770.1"
                     /translation="MRKFLLTLTTVIALFFTSTPILAEDFSVAAKHAIAVEVSSGKIL
                     YEQDAETKASIASISKTLSIYLVYEALAKGEITLDTMVDISDYPYSLTSNTELSNVNL
                     DERSYSVRDLLNASLITSSNSAIIALAEKIAGSEAAFVDRMKAKVQEWGITDAKIVNV
                     SGLDNTDLGENIYPGSSPEDVNMFSALDVAIIARRLILDYPQVLDITSLNAYDFGGYT
                     YYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFLATTQQAGMRIITVVLNATDGLTSP
                     ENRFVATNDLMNYVYSNFSLVTLVKKGEAFEDSKIKVFNGEKETSPVVVAADLTVVQR
                     NQTDNAPTATFTTDIKEIDAPLKAGTLVGKLQLKDQDLIGKGYISEQASVDMIIPSDM
                     KEASWPFSWWNQFVRYVNEKL"
     gene            complement(1534..2949)
                     /gene="sufB"
                     /locus_tag="U1335_001286"
     CDS             complement(1534..2949)
                     /gene="sufB"
                     /locus_tag="U1335_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016397186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEM5231771.1"
                     /translation="MSEERIEPTPIDLGEYKFGFHDENVELVASTGKGLNEEVIREMS
                     RIKGEPEWMLEFRLKSYQTFKKMPMQTWGADLSELDFDDIVYYQKPSDKPARSWDDVP
                     DKIKETFERIGIPEAERAYLAGASAQYESEVVYHNMKEEYDKHGIIFTDTDTALKEYP
                     ELFKKYFGKLVPPSDNKLAALNSAVWSGGTFIYVPKGVKLDIPLQTYFRINNEGTGQF
                     ERTLIIVDEGASVHYVEGCTAPTYSTASLHAAIVEIIAHEGAYMRYTTIQNWSDNVYN
                     LVTKRARAEKNATVEWIDGNLGAKTTMKYPAVYLEGEGARGTMLSIAFANKGQVQDTG
                     AKMIHNAPRTSSSIVSKSIARGGGEVNYRGQVTFAKNSAKSISHIECDTIIMDDISKS
                     DTIPFNEIHNSQVALEHEAKVSKISEEQLYYLMSRGLSESEATEMIVMGFVEPFTKEL
                     PMEYAVELNRLIAYEMEGSVG"
     gene            complement(3403..3843)
                     /locus_tag="U1335_001287"
     CDS             complement(3403..3843)
                     /locus_tag="U1335_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HEM5231772.1"
                     /translation="MALSRLDSLYMAVVSEHSKSPRHRGSLDGVEKLELHNPTCGDVI
                     ELSVKIEKDVITDIAFDGVGCTISTASASMMTEAVLGKEISQIQELAEIFSQMVQGQD
                     DERQKELGDASLLAGVAKFPQRIKCATLPWNALKKALERSESAD"
     gene            complement(3830..5053)
                     /locus_tag="U1335_001288"
     CDS             complement(3830..5053)
                     /locus_tag="U1335_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001020754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM5231773.1"
                     /translation="MDLERIRKDFSILDQVVNDEPLVYLDNAATTQKPQQVLDVLADY
                     YQKDNANVHRGVHTLSERATARYEAARQKVADFIQAKSSKEILFTRGTTTSLNWVAQF
                     AKEILQPDQEVIISVQEHHSNIIPWQQACQQTGAKLRYVTLKDGELDMDHLRSLLSSK
                     TKFVSLAHVSNVLGSVAPIGEIAELVHQVGAYLVVDGAQSVPHMAVNVQELDVDFYAF
                     SGHKMLGPTGIGVLYGKEELLNRMSPVEFGGEMIDFVYEQSATWKELPWKFEAGTPNI
                     AGAIGLGAAIDYLTEIGMDAIQAHEAELVDYVFPKLQAIPGLTIYGSQDLSKRTGVIA
                     FNLDDLHPHDVATALDYEGVAVRAGHHCAQPLLRYLQVPATVRASFYIYNTKADCDKL
                     VEAIIKTKEFFNGPI"
     gene            complement(5057..6319)
                     /gene="sufD"
                     /locus_tag="U1335_001289"
     CDS             complement(5057..6319)
                     /gene="sufD"
                     /locus_tag="U1335_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013989976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HEM5231774.1"
                     /translation="MTKEKIQEFSAVQAEPSWLTDLRLKAFDKIAELDLPVIERVKFH
                     RWNLGDGSLATNDEIGAVPDFTAIGDNPMLVQVGSQTVLEQLPVDLVEKGVVFTDFAS
                     AMDVIPDVIEKYLGAAVAYDEHKLAAYNTAYFNATAVLYVPDNVEIDQPVEALFYQDS
                     TSPVAFNKRVLIIAGKNAKLNYLERFESLGDGATATSANIVVEVIALAGSQIKFAAID
                     RLGKHLDTYLNRRGYLGNDATIDWAIGLLNEGNVIADLDSELKGNGSHANLKVVGLSS
                     GRQVQGVDTRVTNYGHNSVGHILQHGVILESGTLTFNGIGHIVRGAKGADAQQESRVL
                     MLSDKARSDANPILLIDENEVTAGHAASIGQVDPEDMYYLMSRGLDRATAERLVVRGF
                     LGAVITEIPVKEVRDQLIAVIEEKLTKR"
     gene            complement(6336..7109)
                     /gene="sufC"
                     /locus_tag="U1335_001290"
     CDS             complement(6336..7109)
                     /gene="sufC"
                     /locus_tag="U1335_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEM5231775.1"
                     /translation="MSVLEIKDLHVEIEGKEILKGVNLTLKTGEIAAIMGPNGTGKST
                     LSAAIMGNPSYEVTQGEILFDGVNILELEVDERARMGLFLAMQYPSEIPGITNAEFLR
                     AAMNAGKEDEDKISVRDFITKLDEKMELLNMKEEMAERYLNEGFSGGEKKRNEILQLL
                     MLEPTFALLDEIDSGLDIDALKVVSKGINAMRGEGFGAMIITHYQRLLNYITPDVVHV
                     MMEGRVVLSGGPELAQRLEKEGYVQVAAELGIDYKEDDI"
     gene            complement(7686..8858)
                     /locus_tag="U1335_001291"
     CDS             complement(7686..8858)
                     /locus_tag="U1335_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl/decaprenyl-phosphate
                     alpha-N-acetylglucosaminyl 1-phosphate transferase"
                     /protein_id="HEM5231776.1"
                     /translation="MIPFALKYIMVIITTMVISAIATPLVRFMSLKVGAVDNPNARRI
                     NKVPMPSAGGLAIFVAFTISVLCFLPGIVTRVNYHGTYLHYIWPLVLASSIIVLTGFI
                     DDVKELKPAPKMFGILAAATIIWIFTEFRFDSFKIPFGGPFLQFPVWLSFLLTVLWIV
                     SITNAVNLIDGLDGLVSGVSIISLTTMGIVSYFFLHDSNIFLTLTIFVLVAAIVGFLP
                     YNYNPAIIYLGDTGALFIGFMIGVLSLQGLKNSTAVAVVTPMIILGVPITDTVVAIIR
                     RKLSGQKIYEADKMHLHHRLLSLGLTHRGTVLVIYAISFLFSLTSLLLNVSSRIGGIL
                     LLVTMGLGIEILCELIGIFGINRTPLLNLLRFIGNSSYRQEKIAKYKKCYEEKKRK"
     gene            complement(8855..9577)
                     /gene="mecA"
                     /locus_tag="U1335_001292"
     CDS             complement(8855..9577)
                     /gene="mecA"
                     /locus_tag="U1335_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adaptor protein MecA"
                     /protein_id="HEM5231777.1"
                     /translation="MKVKQISDSTLKITIKLDDLEERGMELSDFLIPQEKTEEFFYTV
                     LDELDLPMTFRESGMLSFRVTPKPDRVDIFVTKSDLDQNLNFDEFTDFSELGDVASMT
                     PDEFFKSLEQTVREKSAPDATAVRHLEEVEQEEEADEEEQERYIYYILEFPTIEDLFT
                     FVGTVDYPVEESELYKMDGHYYLTVLINVENRSKQYPGYILSRMLEFTNDTKLTRPAL
                     QEHGTLMLPLAAIEELRKVPTV"
BASE COUNT         2715 a         2242 c         2033 g         2725 t
ORIGIN      
        1 gccaaaggaa tgattatgcg taaattttta ctaacactca ctacagttat tgctcttttt
       61 ttcacttcca cacctatttt ggcagaagat ttttctgttg cagccaagca tgctatcgca
      121 gttgaagtaa gtagcggcaa aatcttgtat gagcaagatg ccgaaaccaa agcaagcatt
      181 gcttctatca gtaagacatt gagcatttac ctggtctacg aagcactggc aaagggtgag
      241 atcactttag atactatggt agatatttct gattatccct atagcctcac ttctaataca
      301 gaattaagca acgtcaacct agatgaacgt tcctattcag taagagacct attaaacgct
      361 tctttaataa catcatccaa tagtgctatt attgctctgg cagaaaaaat agccggtagc
      421 gaagctgcat tcgtagatcg aatgaaagca aaagtccaag aatggggaat taccgacgct
      481 aagattgtca atgtatctgg actagacaat accgacttgg gggaaaatat ttatccaggc
      541 tccagtcctg aagatgtaaa tatgttttca gccctagatg ttgctatcat tgcaagacga
      601 ttaatactcg actatcctca ggttctcgac attacctcac taaacgccta cgattttggt
      661 ggctacactt actatagcac caaccaaatg ctaagcgatg gtactcacgc tcgtggaggg
      721 gttgacggct taaaaacagg gacctcaaac tcagcaggtt caagttttct tgcaacaact
      781 caacaagctg gtatgcgcat tatcacagta gtattgaatg ccactgatgg gctgacctct
      841 ccagaaaatc gttttgtcgc gacaaatgat ttgatgaact atgtttattc taacttttcg
      901 cttgttacgc tagtaaaaaa aggtgaagct tttgaagata gtaagataaa ggttttcaat
      961 ggcgaaaaag aaacaagtcc tgttgttgtg gcagcagatt taactgttgt tcaacgaaat
     1021 caaactgata atgcccccac cgcaactttc acaacggata taaaagaaat tgatgctccc
     1081 ctcaaagcag ggaccctggt tggcaaactg caactgaaag atcaagatct cattggaaaa
     1141 ggttatattt ccgaacaagc tagtgtcgat atgattatcc ctagcgatat gaaagaagca
     1201 tcctggccat tctcttggtg gaatcagttt gtccgctatg tcaatgaaaa attataaaaa
     1261 atagtatgtc gaacgatttt cgacatacta ttttttatag cagagtgaca tccgctattc
     1321 cttatctact acttcagtgg ggagtttgac aggtttgaat ggctttaaag ctatttgagt
     1381 cacaaggtta tctgaattac aaagaagagc gactaccgtc gctctctatt tccaacgtcg
     1441 gttggtgaga gttcctgtgg aactcctcac tacatatcat tttcttacag aaaatgatga
     1501 gcgtggaagg taacaattcc ccgaattgtt accttagccc acgctcccct ccatctcata
     1561 ggcaatcagt ctgttgagtt cgactgcgta ttccattggg agttcttttg tgaatggttc
     1621 gacaaagccc atgacaatca tctctgtagc ttcggattcg gataggccac ggctcatgag
     1681 gtagtagagc tgttcttctg agatttttga tactttggct tcgtgttcga gggccacttg
     1741 tgagttatgg atttcattaa atggaatggt atctgatttg gaaatatcat ccatgataat
     1801 ggtgtcacat tcgatgtggc tgatagactt ggctgagttt ttagcaaaag tgacttgacc
     1861 acggtagtta acttctccac cgccacgggc aatagatttg gatacgatag aagatgaagt
     1921 ccgtggtgca ttgtgaatca tcttagctcc ggtatcctgc acctgaccct tgttagcaaa
     1981 ggcaatggac agcatagttc cacgcgcccc ctcaccttcc aagtaaaccg cagggtattt
     2041 catggtcgtc ttagcaccaa ggttgccgtc aatccactcg actgtagcat ttttttcggc
     2101 acgggcacgc ttggttacca agttatagac attgtctgac cagttctgaa tggtcgtgta
     2161 acgcatatag gcaccttcgt gggcaatgat ttccacaata gcagcgtgaa ggctggccgt
     2221 tgagtaagtc ggagcggtac agccttctac atagtgaaca cttgctcctt catccacgat
     2281 gatgagggtg cgttcaaact gacctgtccc ttcattgttg attcggaaat aggtttggag
     2341 tggaatatcc agcttgacac cttttggcac atagataaag gtaccccccg accaaacggc
     2401 tgagttgagg gcggccagtt tattatctga cggcggaacg agttttccaa agtatttttt
     2461 gaagagttct ggatattctt taagagccgt gtcggtatcc gtaaagataa tgccgtgctt
     2521 gtcgtactct tccttcatgt tgtggtagac cacttctgat tcgtactggg cagaagcacc
     2581 agctaggtag gcacgctcgg cttctggaat cccgatgcgt tcaaaggttt ccttgatttt
     2641 atctggcacg tcgtcccagc tgcgtgctgg cttatccgac ggtttttgat agtaaacaat
     2701 atcatcaaaa tccagctcag acaagtcggc tccccaagtt tgcataggca ttttcttgaa
     2761 ggtttggtag gatttcaaac ggaattccaa catccattcc ggctcgcctt tgatacggga
     2821 catttcacga atgacttctt cgttcaaacc cttaccagtc gaagctacca gttccacgtt
     2881 ctcgtcatgg aaaccgaatt tgtattcccc aaggtcaatc ggggttggtt caattctttc
     2941 ttctgacata atataagata catggcccct taagaaagca aatgaaaaat agggaatcga
     3001 cctcgtgtgc aaacacacgc ggagatttat ctttttcaaa agcttctagg gcgagttcaa
     3061 tttcatttcc aatcagaaac tgaacaatcc tttctgtatg attttcattt tttgtttatt
     3121 tatagtcttt tagtttactt ttagtactag gcaacgagct gcagacagta ctggagtacg
     3181 gcaaagcgag ttaacgaagt aataaaagaa aaactaaatg actatattga tgctcattca
     3241 gcactctcac tgcgttcgat tgctttcttc aagacactaa acttggttgg aactaaagtt
     3301 cctaaccaag taacgcaagg ttctaatcaa ccttgctaag cggcttacta attcgctgat
     3361 tttggtatta tcgaccaaaa tcgctcatgt cgcagttacc cttcagtcag cactttcact
     3421 tcgttccagt gctttcttca gggcattcca cggtaatgtg gcacatttga ttcgttgagg
     3481 aaatttggcg acacctgcaa ggagggaggc gtcccctagt tccttttgac gttcatcatc
     3541 ttgcccttgg accatttgtg agaagatttc cgccagctct tgaatctgac tgatttcttt
     3601 gccaagcact gcttcagtca tcatagaagc cgatgcggtt gaaatggtgc acccaactcc
     3661 gtcaaaagca atatcggtaa tcacatcttt ttcaatcttg actgatagtt caatcacatc
     3721 accgcaggtt ggattgtgga gttctagttt ctccactccg tccaaacttc cgcgatgacg
     3781 aggcgacttg gagtgttcag acacaactgc catataaaga gaatctaatc tagatagggc
     3841 cattgaaaaa ctcctttgtc ttgataattg cctcgaccaa cttatcacag tcggccttgg
     3901 tattgtagat gtaaaaactt gctcgtacag tagcaggcac ctgcaaatat ctgagaagcg
     3961 gttgggcaca atggtggcca gcccgcacag caacaccttc atagtccaaa gcagttgcca
     4021 catcgtgtgg atgcaagtca tccaagttaa aggcaataac tcccgtccgc ttggacaggt
     4081 cctgactacc ataaatggtc aagcctggaa tagcctgcaa ttttggaaag acatagtcaa
     4141 ccagttctgc ctcgtgggcc tggatggcgt ccataccaat ttcggtcagg taatcaatgg
     4201 ccgctcccaa cccaatcgca cctgcaatat tgggcgttcc tgcctcaaac ttccaaggta
     4261 attccttcca agtggctgat tgctcataga caaagtcaat catttcaccg ccgaattcga
     4321 ctggcgacat gcgattgagc aattcttcct tgccgtagag gacgccaatt cctgtcggtc
     4381 ccaacatctt atgacctgaa aaggcataga agtccacgtc taattcttgc acgttgacgg
     4441 ccatgtgggg aactgattgg gctccgtcca ccaccaagta ggcaccgact tgatgcacca
     4501 gctctgctat ttccccaata ggagctacgc tgcctaggac attggatacg tgtgctaggg
     4561 agacaaactt ggtcttagaa gatagtagcg accgcaggtg gtccatgtct agctcgccgt
     4621 cttttagggt cacatagcgg agcttggcac ctgtttgctg acaggcttgc tgccaaggga
     4681 tgatattgga gtggtgctct tgaaccgaga tgattacttc ctggtctggc tggagaattt
     4741 cctttgcaaa ctgagccacc cagttaagac tagtggtcgt acctctggtg aagaggattt
     4801 ccttgctaga cttggcctgg ataaaatcag ccaccttctg ccgagccgcc tcgtagcgag
     4861 ccgttgctcg ttccgaaagg gtgtgaacgc cacggtggac attggcattg tccttctggt
     4921 aataatccgc cagcacatct agcacctgct gcggtttttg agtggtcgcc gcattgtcca
     4981 aatagaccag cggctcatcg ttaacaactt ggtctaggat tgaaaaatcc ttgcgaatgc
     5041 gttccaaatc catatcttat ctctttgtta gtttttcttc aatcacggca atcagttggt
     5101 cacgaacttc cttaacagga atttcggtaa tgactgcacc aaggaaaccg cgaacaacca
     5161 agcgttcagc tgttgctcgg tccaggccac gactcataag gtagtacatg tcttctggat
     5221 ccacctgacc gattgaagct gcgtgtccag ctgtgacctc gttctcatcg ataaggagaa
     5281 ttgggttagc atcggagcga gccttgtcag acagcatgag gacacggctt tcctgctggg
     5341 catccgcacc tttagcacca cgaacaatgt gtccgatacc attaaaagtc aaggttccac
     5401 tttctaagat taccccatgt tgcaggatgt gaccgactga attatgaccg tagttggtca
     5461 cgcgcgtatc cacaccttgt acctgacgac cggaagatag tccaacaacc ttgaggttgg
     5521 catggctacc gtttcctttc aattcgctgt ctaagtccgc aatgacattt ccttcgttga
     5581 gcagaccaat cgcccagtca atcgttgcat catttccaag atagccgcga cggttgaggt
     5641 aggtatccaa atgcttacca aggcggtcaa tagccgcaaa cttgatttgg ctaccagcaa
     5701 gggcgattac ttctacgaca atattggctg aagtcgctgt tgctccatca cccagacttt
     5761 caaaacgttc caggtaatta agcttggcgt tttttcctgc gatgataagg acacgtttgt
     5821 taaaggcaac tggactggtg ctgtcttggt agaaaagagc ctcaactggc tggtcaattt
     5881 caacattgtc tggcacgtaa agtaccgcag ttgcgttaaa ataggcagtg ttgtaagccg
     5941 ctaatttgtg ctcatcgtag gctacggcag caccgaggta tttttcaatg acatcaggaa
     6001 tgacatccat ggctgaggca aagtccgtaa agaccacacc tttttctaca aggtcaaccg
     6061 gcaactgttc tagaaccgtt tgactgccaa cttggaccaa cataggattg tcaccgatag
     6121 ctgtaaaatc tggcacagca ccgatttcat catttgtggc tagacttccg tcacctaaat
     6181 tccaacggtg aaatttgacc cgctcgataa ccggcaagtc cagctctgct attttgtcaa
     6241 aagccttaag acgcaggtct gtcaaccagc ttggttctgc ctgcacggct gaaaattctt
     6301 gaatcttttc tttggtcata gcttcctcca aagacttaaa tgtcatcttc tttgtagtcg
     6361 atgccaagct ctgctgcaac ttggacatat ccttcttttt ccaagcgttg cgccaattct
     6421 ggtccgcctg aaagcacgac acggccttcc atcatgacat ggactacatc aggcgtgatg
     6481 tagttgagca aacgttggta gtgagtgata atcatggcac caaaaccttc tccacgcata
     6541 gcattgatac cttttgatac aaccttaagg gcatcgatgt ccaaacctga gtcaatctca
     6601 tcaagaaggg caaaagttgg ttccaacatg agcaactgca gaatttcatt gcgttttttc
     6661 tcaccaccag agaaaccttc gttgaggtag cgctctgcca tttcctcttt catgttgagg
     6721 agttccattt tttcatccag tttagtaatg aagtcgcgga ctgagatttt gtcttcatct
     6781 tccttaccag cgttcattgc ggcacgaagg aattccgcat tagtaatccc tggaatttct
     6841 gacgggtatt gcatcgccaa gaagagtccc atacgggcac gttcatcgac ttctaattct
     6901 aaaatattga caccgtcaaa cagaatctca ccttgggtaa cttcataact tggattaccc
     6961 atgatggctg ctgaaagggt ggatttccct gttccgttcg gtcccatgat ggctgcaatt
     7021 tcacctgttt taagggtcaa attcacaccc ttcaagattt ctttgccttc aatttccaca
     7081 tgaaggtctt tgatttctaa tactgacatg ctgtgctcct tttcattttt gtcctcttca
     7141 aaaaccacat taactgacca agctaactag atacaccgat aagactcaac tttggcagtg
     7201 gggaaagaac tcgaccattc atagaagagc ccgtcaacaa gtcctagttt taagttgttg
     7261 agctgggagt ggggaaagaa ctcgaccatt catagaagag ttcgtcaaca agtcctagtt
     7321 ttaagttgtt gagctgaaac agtctattcc cagactgttt cactcccgcc cccgcacagc
     7381 tcaaactgtc tgggagacag tttgaggttg gagatgaagc gaactctgtt cgcctcagtc
     7441 gtagagatca gatttggagt gtaaaacacg aacaaatctg ccaatcaacc actactgcgc
     7501 tgcgaggttg acgctaactt tgagaagcgg tgctgggctt gagcccagcc tcttttcgtg
     7561 ttaatgatga ttttcagaga gtgttaatct ataaaatagt cttttctgac aattttaatt
     7621 aactatatcc actatattat atcaaaaaaa gagcctgacg gctcttatct tgtttagaaa
     7681 gattcttatt ttcttttttt ctcttcgtag cactttttat actttgcgat tttttcttga
     7741 cggtaactac tattaccaat aaaccgaaga agattgagca agggagttct attgatacca
     7801 aagatgccaa tcaattcaca gagaatctca atcccaagtc ccatggtcac caataggaga
     7861 atccccccta ttcgactcga aacattgagc aaaagagagg tcagggagaa taagaaagag
     7921 atggcgtaaa tcaccaatac tgtgccacga tgagtaagtc ccagagagag caatctatga
     7981 tgcagatgca tcttatctgc ttcatagatt ttttgcccag acaattttcg acgaatgatg
     8041 gctactacag tatccgtaat aggcactcca agaataatca tcggagtaac cactgcaaca
     8101 gctgtcgaat ttttcagtcc ttgaagcgac aagactccaa tcataaaccc aatgaaaagg
     8161 gctcctgtat cgccaagata aatgatggcg ggattatagt tatagggtaa aaatcctaca
     8221 atcgccgcaa ccaaaacaaa gatggttaag gtcaaaaaaa tattgctatc atgcaaaaag
     8281 aaataagaca caattcccat cgttgtcaag gaaataatcg atactcccga aaccagacca
     8341 tccaaaccat caatcaagtt gactgcattc gtaatggaaa caatccaaag gaccgttaat
     8401 agaaaagaga gccagacagg aaattgaagg aaaggtcctc caaaaggaat cttaaagcta
     8461 tcaaaacgaa attccgtaaa aatccaaatg atcgtcgctg cagctagaat accaaacatt
     8521 ttaggagcag gctttagctc cttgacatca tcaatgaatc ccgtaagaac gataatgctg
     8581 gatgctagga ccaggggcca gatataatgc aagtaagtgc catggtaatt gacacgggta
     8641 acaattcctg gtaaaaaaca taaaacagaa atggtgaatg ccacaaagat agccagccct
     8701 cccgctgaag gcatgggcac cttatttatc cgccgcgcat tgggattatc gactgctcca
     8761 accttcaggg acataaaacg aaccaagggg gtcgcaatgg ctgatatgac catggttgta
     8821 ataatgacca ttatgtattt tagagcaaaa ggaatcatac tgtcggaacc ttcctaagct
     8881 cctcgattgc cgcaagtgga agcatcaaag ttccgtgttc ttgtaaagca ggtctggtca
     8941 acttagtatc attggtaaat tccaacattc gtgaaagaat gtagcctgga tactgcttgg
     9001 aacgattttc tacattgata agaacggtca agtagtagtg accatccatt ttatataatt
     9061 ccgattcttc tactggataa tcaaccgtac caacaaaagt aaacagatcc tctatcgttg
     9121 gaaattccaa aatatagtaa atatagcgct cctgctcctc ttcatctgct tcttcctctt
     9181 gctctacctc ttccaaatga cgaacggctg ttgcatccgg tgcacttttc tcacgaacgg
     9241 tttgctccaa actcttgaaa aactcatctg gagtcatact tgcaacatca ccaagttccg
     9301 aaaaatctgt aaattcatca aaattcaagt tctgatccaa atcagatttg gtaacaaaga
     9361 tgtccacccg atctggcttc ggagtcacac gaaaactcag cataccgctt tctcggaaag
     9421 tcattggtaa atccaattca tccaaaacag tgtagaagaa ctcctctgtc ttttcttgcg
     9481 gaatgagaaa gtccgaaagt tccattcctc tctcttccaa atcatctaat tttatagtga
     9541 ttttcaaggt tgaatcacta atttgcttta ctttcataac tacctcattc actgattcat
     9601 caatttccta aaattgattg atcattttca atactcatac atatcttcca ccattatact
     9661 aaaaccaagc tcgaaagaca aaagaaaagc aggtccccct gctcttaaaa taaaa
//
LOCUS       DASGAC010000073         9676 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.073, whole genome shotgun sequence.
ACCESSION   DASGAC010000073 DASGAC010000000
VERSION     DASGAC010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9676)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9676)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9676
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.073"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(44..292)
                     /locus_tag="U1335_001293"
     CDS             complement(44..292)
                     /locus_tag="U1335_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEM5231778.1"
                     /translation="MTREQVYQRVVELIQDEKGEDFKVQPESTLADNIAADSVEIMEF
                     VLTLEDEFGVDIPDAAIERFETLSDIVDFIYEELQKRS"
     gene            complement(285..1292)
                     /gene="plsX"
                     /locus_tag="U1335_001294"
     CDS             complement(285..1292)
                     /gene="plsX"
                     /locus_tag="U1335_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEM5231779.1"
                     /translation="MKRIAVDAMGGDHAPQAVVEGVNQALAAFPDIEIQLYGDETKIK
                     QYLTATERVSIVHTTEKINSDDEPVKAIRRKKEASMVLATKAVKDGQADAVLSAGNTG
                     ALLAAGVFVVGRIKNIDRPGLMSTLPTMDGKGFDMMDLGANAENTAHHLYQYGILGSF
                     YAEHVRGVKQPRVGLLNNGTEDTKGTPVHQEAYKLLAEDKSINFIGNVEARELLNSVA
                     DVVVTDGFTGNAVLKTVEGTAKSIVGQLTGSIKNGGLRAKLGGLLVKPTLKKALGAMD
                     YKKAGGAVLLGLKAPVIKAHGSSDAQSIFYTIKQTRSILEAGIVEKSVEKFSVVEDSH
                     D"
     gene            complement(1289..2071)
                     /gene="recO"
                     /locus_tag="U1335_001295"
     CDS             complement(1289..2071)
                     /gene="recO"
                     /locus_tag="U1335_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HEM5231780.1"
                     /translation="MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKFR
                     LVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKAINADIFKLSYATYILALADAAL
                     QDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGVSLNFHECAFCHRVGL
                     PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKL
                     RLFIDQLYEEYVGIHLKSKKFIDDLSSWGQIMKPRTENEETE"
     gene            complement(2058..3236)
                     /locus_tag="U1335_001296"
     CDS             complement(2058..3236)
                     /locus_tag="U1335_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM5231781.1"
                     /translation="MDLLNRFNKNLNRIEVSMIRQFDQSISDVPGILKLTLGEPDFTT
                     PDHVKEAAKAAIDADQSYYTGMAGLLELRQAAAEFVAEKYNLHYNPENEILSTIGATE
                     ALSASLVAILEAGDTVLLPAPAYPGYEPIVNMVGADIVEIDTTANDFVLTPEMLEEAI
                     IEQGDKLKAVILNYPANPTGVTYSREQIQAFADVLRKYPVFVLSDEVYAELTYTGQPH
                     TSIAEFLPEQTILIQCLSKSHAMTGWRIGLIMSQAPIIAQIIKSHQYLVTAASTAMQY
                     GAVEALKNGKDDALPMRAEYVKRRDYIIEKMTDLGFKIIKPDGAFYIFAKIPAGYNQD
                     SFSFLQDFARKKAVAFIPGAAFGQYGEGYVRISYAASMETIQTAMARLKEYLEENGTN
                     "
     gene            complement(3323..4291)
                     /locus_tag="U1335_001297"
     CDS             complement(3323..4291)
                     /locus_tag="U1335_001297"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HEM5231782.1"
                     /translation="MAFTDLKLFALSSNQKLAEQVSKKIGIPLGKSSVRQFSDGEIQV
                     NIEESIRGTHVYILQSTSSPVNDNLMEILIMVDALKRASAESVNVVMPYYGYARQDRK
                     ARAREPITSKLVANMLQTAGVNRLLTIDLHAAQIQGFFDIPVDHLMGAPLIADYFERR
                     GMVGDGYVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKMNTSEVMNIIGDIKDK
                     TCILIDDMIDTAGTICHAADALADAGATAVYASCTHPVLSGPAMDNISKSAIKKLVVL
                     DTIEIAEDRLIDKIEHISTAELLAEAIIRIHEKRPLSPLFEASRVK"
     gene            complement(4394..5635)
                     /locus_tag="U1335_001298"
     CDS             complement(4394..5635)
                     /locus_tag="U1335_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HEM5231783.1"
                     /translation="MKKKILATIMLSTVVLSNANYVAVISANDVDSQIAAKNQQISEL
                     TAQQAEAQQQVDAIQGQVDAIVSEQAKLTEENTRLEAESQTLAADIERLSADIVSRDG
                     ALKEQARSAQVDGSASSYINTILDSKSIVDAVSRVNAMREIVSANNRMLEQQKADKEA
                     IAEKQKANQEAITTLAANRQKLEDDAQVLQVRQAELEAAKLNLAVQKATAEDEKNSLL
                     AQKAAAEEAARQAAARQAEYQAQQAALAQQQVASVSAPVVSTPVETTVTETVATVSQS
                     TPTVSTPTTSISSGSGSSAAANNARYDASSYPIGECTWGVKSQLSWVGPYWGDAKQWL
                     ASARAEGFSTGSTPQVGAIAVWTGGYYGHVAVVTAVQSSTSIQVVESNYMGRRYIGNH
                     RGWFNPTTTSEGAVYYIYPPY"
     gene            complement(5720..6235)
                     /gene="mreD"
                     /locus_tag="U1335_001299"
     CDS             complement(5720..6235)
                     /gene="mreD"
                     /locus_tag="U1335_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HEM5231784.1"
                     /translation="MRNKMIEIFMFPILFFILLLDGQISTLVTNWSVGLFTISSHLVL
                     MLAIFYANYVSLGFSLFIFTLLGLVYDISYLNLIGIATTTLPLVLYCIYFFFQGAVSK
                     RGINILILLVAIFQFEFISYSFARIFHITNLSVFIFVFNKLLPSLLFNLALFFVLQPL
                     FERLFGITNKT"
     gene            complement(6225..7061)
                     /gene="mreC"
                     /locus_tag="U1335_001300"
     CDS             complement(6225..7061)
                     /gene="mreC"
                     /locus_tag="U1335_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEM5231785.1"
                     /translation="MNKFSKLVVVVSIFLLLSFSLLFVTFSKGLQVPYLNNIVRVVVT
                     PIQSVISVPTRFFSEQKDVLTDLMNAYEENKQLKEAIMSLEGMAAENTSLKEENASLR
                     SSLGVVSDFPEKQLIPGSVLVRTPSSWSEHISINIGETSGVTSNALVVANGGLVGIVS
                     SLSSDSAVVTLFTNSDEFTKLPVKISVDSKEIYGILSGYDADTNSFIIDQLNSADEIA
                     VGSNVVTSDLAGATSANIQIGKVLSVKSNSNSLNREVYVEPTASFSNIYSVLVVGQTN
                     AQ"
     gene            complement(7131..7218)
                     /locus_tag="U1335_001301"
     tRNA            complement(7131..7218)
                     /locus_tag="U1335_001301"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7182..7184),aa:Ser,seq:gct)
     gene            complement(7231..7304)
                     /locus_tag="U1335_001302"
     tRNA            complement(7231..7304)
                     /locus_tag="U1335_001302"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7268..7270),aa:Ile,seq:gat)
     gene            complement(7336..7408)
                     /locus_tag="U1335_001303"
     tRNA            complement(7336..7408)
                     /locus_tag="U1335_001303"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7373..7375),aa:Phe,seq:gaa)
     gene            complement(7424..7497)
                     /locus_tag="U1335_001304"
     tRNA            complement(7424..7497)
                     /locus_tag="U1335_001304"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7461..7463),aa:Met,seq:cat)
     gene            complement(7508..7597)
                     /locus_tag="U1335_001305"
     tRNA            complement(7508..7597)
                     /locus_tag="U1335_001305"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7559..7561),aa:Ser,seq:tga)
     gene            complement(7604..7677)
                     /locus_tag="U1335_001306"
     tRNA            complement(7604..7677)
                     /locus_tag="U1335_001306"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7641..7643),aa:Ile,seq:cat)
     gene            complement(7694..7767)
                     /locus_tag="U1335_001307"
     tRNA            complement(7694..7767)
                     /locus_tag="U1335_001307"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7731..7733),aa:Met,seq:cat)
     gene            complement(7780..7853)
                     /locus_tag="U1335_001308"
     tRNA            complement(7780..7853)
                     /locus_tag="U1335_001308"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7817..7819),aa:Pro,seq:tgg)
     gene            complement(7901..7974)
                     /locus_tag="U1335_001309"
     tRNA            complement(7901..7974)
                     /locus_tag="U1335_001309"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7938..7940),aa:Arg,seq:acg)
     gene            complement(7993..8076)
                     /locus_tag="U1335_001310"
     tRNA            complement(7993..8076)
                     /locus_tag="U1335_001310"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8040..8042),aa:Leu,seq:taa)
     gene            complement(8084..8155)
                     /locus_tag="U1335_001311"
     tRNA            complement(8084..8155)
                     /locus_tag="U1335_001311"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8121..8123),aa:Gly,seq:gcc)
     gene            complement(8168..8240)
                     /locus_tag="U1335_001312"
     tRNA            complement(8168..8240)
                     /locus_tag="U1335_001312"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8205..8207),aa:Thr,seq:tgt)
     gene            complement(8259..8340)
                     /locus_tag="U1335_001313"
     tRNA            complement(8259..8340)
                     /locus_tag="U1335_001313"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8304..8306),aa:Leu,seq:tag)
     gene            complement(8344..8416)
                     /locus_tag="U1335_001314"
     tRNA            complement(8344..8416)
                     /locus_tag="U1335_001314"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8381..8383),aa:Lys,seq:ttt)
     gene            complement(8482..8554)
                     /locus_tag="U1335_001315"
     tRNA            complement(8482..8554)
                     /locus_tag="U1335_001315"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8519..8521),aa:Asp,seq:gtc)
     gene            complement(8557..8629)
                     /locus_tag="U1335_001316"
     tRNA            complement(8557..8629)
                     /locus_tag="U1335_001316"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8594..8596),aa:Val,seq:tac)
     gene            complement(8635..8750)
                     /gene="rrf"
                     /locus_tag="U1335_001317"
     rRNA            complement(8635..8750)
                     /gene="rrf"
                     /locus_tag="U1335_001317"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(8954..>9676)
                     /locus_tag="U1335_001318"
     rRNA            complement(8954..>9676)
                     /locus_tag="U1335_001318"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT         2893 a         2413 c         1776 g         2594 t
ORIGIN      
        1 tttaacggta ttttgtaaaa aaataaagaa aaacgcccgt aaactacgaa cgtttctgta
       61 attcttcata aataaaatcc acaatatcag atagggtttc aaagcgttca atggccgcat
      121 caggaatatc gacaccaaac tcgtcttcca aagtcaaaac aaattccatg atttccaccg
      181 aatccgctgc gatattatca gccaaagtcg actcaggttg aactttaaaa tcctcaccct
      241 tttcatcttg aatcaattca acaacccgct gatagacctg ctctctagtc atggctgtcc
      301 tccactactg aaaatttctc caccgatttt tcaacaatgc cagcctccaa gatagaacgc
      361 gtctgcttaa tcgtatagaa aatcgactgg gcatcgctgg atccgtgcgc cttgatgaca
      421 ggtgctttca gaccaagcaa gacagcacca ccagccttct tataatccat agcccccagt
      481 gcctttttaa gagtcggctt gaccaaaaga ccacccaatt tagcacgcag accgccattt
      541 ttgatagagc ccgtcaactg accaacgatg gattttgcag tcccttcaac tgttttcagc
      601 acagcgtttc ccgtgaaacc atccgtcacg accacatccg ccacactgtt gagcaactca
      661 cgcgcctcca cattgccgat aaagttgatt gacttgtctt ccgccaagag tttataggct
      721 tcttggtgaa ctggcgtgcc cttggtatct tccgtaccgt tgttcaaaag tcccacacga
      781 ggttgtttga caccacgcac gtgctccgcg taaaatgaac caagaatacc atactgatag
      841 aggtgatgag ctgtattttc agcatttgca cccaaatcca tcatatcaaa tcccttaccg
      901 tccatagtag gaagagtgga cataagacca ggacggtcga tgttcttgat gcgaccgacg
      961 acaaagacgc ctgccgccaa aagagcaccc gtatttccag ccgacaagac cgcatctgcc
     1021 tgaccatcct tgacagcctt ggtcgctagg accatcgaag cctctttttt ccgacgaatc
     1081 gccttgacag gctcatcatc tgaattgatt ttctcagtcg tatggacgat gctgacacgc
     1141 tctgtcgctg tcaaatactg cttgattttg gtctcatcac cataaagttg aatttcaatg
     1201 tctggaaagg cagccaaggc ttgattgaca ccttctacca ctgcctgagg ggcgtggtcc
     1261 ccacccatag catctactgc aatacgtttc attctgtttc ctcattttct gttcttggtt
     1321 tcataatctg cccccaagaa gacaaatcat ctataaattt cttggatttc aagtgaatcc
     1381 ccacatattc ctcgtacagc tggtcaataa aaagccgtaa ttttcgcttc atctcaggct
     1441 tgatggaaat ggtttctagc tcatcaaagg aaatagcctg aaattgatca agtagatagg
     1501 gaacattggg gtccaaataa gcccgtcgct catcttgttg atagtgttgc ggacacaaga
     1561 caccgctata cttgtaagaa taatcaaaag gcagaccaac ccgatgacaa aaagcacact
     1621 cgtgaaaatt cagactgacc ccaaaacgtc ccaagagctg aatttcaaag atattggtca
     1681 agacttcata atccaaaccc gactccatca agtccaaggt cttgaccaaa aaagcaaaga
     1741 gagctggatc ataaacctta tcctgcaagg ccgcatctgc caaggccaag atataggtcg
     1801 catagctgag tttgaaaata tcagcattga tcgccttaaa aggctggact tgatgaaaat
     1861 cctcaatata agacagccca tcatcattga ttttgacgat aaaatccgca taggtcaaag
     1921 gctggataga agctaccagc ctgaacttag aggcatgttt cacgaaaaac attcgcttgc
     1981 cagccttctc tgtaaaaatc ttgaccagct tatcatcttc ccgaaaattc cgattataaa
     2041 ggactaatcc tctggtttca attcgttcca ttttcttcta gatactcttt caagcgagcc
     2101 atagccgtct gaatggtctc catacttgct gcataggaaa tccgcacata gccctcacca
     2161 tactgaccaa aggccgcacc tggaataaag gccaccgctt tctttctcgc aaagtcttgc
     2221 aagaagctaa aggaatcttg attgtaaccc gcaggaattt ttgcaaagat gtaaaatgct
     2281 ccatcaggct tgataatttt aaagcccaag tctgtcattt tctcgatgat gtaatcccga
     2341 cgcttgacat attccgcccg cataggaagt gcatcgtcct tgccattttt caaagcttca
     2401 accgcaccat actgcatagc agttgaggcc gccgtcacaa gatactggtg gctcttgatg
     2461 atttgagcga taatcggagc ctgactcata atcaagccaa tccgccagcc tgtcatagca
     2521 tgggacttgg acaagcactg aatcaaaatg gtctgctctg gcaaaaactc cgcaatcgaa
     2581 gtatgaggct gaccagtgta agtcaactcc gcatatacct catctgatag gacaaagaca
     2641 ggatacttac gcaagacatc cgcaaaagcc tgaatctgct cacgtgagta ggtcacacct
     2701 gttggattgg caggatagtt gagaatgaca gcttttagct tatccccctg ctcaataatc
     2761 gcctcttcca acatctcagg tgtcaacaca aaatcatttg ccgtcgtatc gatttcaaca
     2821 atgtctgctc ccaccatatt gacaatcggt tcataaccag gataggcagg ggcaggtaga
     2881 agtaccgtat ctccagcttc caaaatagca actaaactgg ctgataaagc ttctgtcgca
     2941 ccgattgtag agaggatttc attttctgga ttgtagtgta aattatattt ttcagccaca
     3001 aactcagctg ctgcctgacg caattccaaa agaccagcca ttccagtata ataactctga
     3061 tcagcatcga tagcagcctt agccgcttct ttaacatgat caggtgttgt aaaatcaggc
     3121 tctcccaagg tcagtttcaa aatcccggga acatccgaaa tagactgatc aaactgacga
     3181 atcatcgaaa cctcaatccg attcaaattc ttattaaaac gatttaataa atccattctg
     3241 ccacctcaaa aacatataaa actattataa tacattttga aaataaatgt aaaaaagaag
     3301 agtcatttga ctcttctcat acctatttaa cacgactcgc ctcaaacaaa ggtgacaaag
     3361 gacgtttttc atgaatacga ataatcgctt ccgctaataa ttctgccgtt gaaatatgtt
     3421 cgattttatc gattaagcga tcttctgcaa tttcaattgt atcaagaaca accaatttct
     3481 taattgctga cttactaatg ttatccatag caggccctga caatactggg tgcgtacatg
     3541 aagcataaac agctgttgcc cctgcatctg ccaaagcatc cgctgcatga cagatggtac
     3601 ccgcagtatc aatcatatca tcaatcaaga tacaagtttt atccttaata tcgccaataa
     3661 tgttcatcac ttctgatgta ttcatcttat caacactacg gcgtttatca ataatagcaa
     3721 tcggtgtctt caagaactgt gctaacttac gggcacgtgt cacaccacca tggtcaggtg
     3781 atacaaccac atagccgtca ccgaccatac cacgacgctc aaaataatcc gcaatcaatg
     3841 gagcacccat caaatgatca acaggaatat cgaagaatcc ctgaatctgc gcagcatgca
     3901 aatcaattgt caacaaacga ttgactcccg ctgtttgtaa catattggca actaattttg
     3961 aagtgattgg ctcacgagca cgagctttac gatcctgacg tgcatagcca taataaggca
     4021 ttactacgtt tactgattca gcagatgcac gtttaagagc atcgaccata atcaaaatct
     4081 ccattaaatt atcattaact ggtgagctag tggattgaag aatatacacg tgagttccac
     4141 gaatggattc ctcaatattt acctgaatct caccatctga aaattgacga acacttgatt
     4201 ttcctagagg aattcctatt tttttcgaca cctgttcagc taacttctga tttgacgaaa
     4261 gagcgaacaa ttttaagtca gtaaacgcca tgacagcctc ctatatattt ctacctttac
     4321 tattttaacc ctttttcctt catttttcaa acaaaaatag agcgcaaatc cacacgctct
     4381 atttgaaaat ttcttaatat ggagggtaaa tgtagtaaac tgcaccttca gatgtagttg
     4441 taggattaaa ccaaccacgg tggttaccaa tataacgacg acccatgtag tttgattcaa
     4501 caacttggat acttgttgaa gattgaacag ccgtaacaac cgctacgtgc ccataataac
     4561 cacctgtcca aacagcaatc gcacctactt gtggagtaga acctgtacta aaaccttcag
     4621 cacgtgctga tgctaaccac tgtttagcat ctccccagta aggaccaacc catgaaagtt
     4681 gagatttaac tccccaagta cactcaccaa ttgggtaaga tgaagcgtca taacgcgcat
     4741 tatttgctgc cgctgaacta cctgaacctg atgatataga cgttgtaggt gtgcttaccg
     4801 ttggtgtaga ttgtgatact gtcgcaaccg tttcagtcac tgtagtttct actggcgttg
     4861 acacgactgg tgctgatact gaggctactt gttgctgtgc tagagctgcc tgttgtgctt
     4921 gatactccgc ttgacgagcc gccgcttgac gagctgcttc ttctgcagct gccttttgcg
     4981 ccaacaatga atttttctca tcttcagcag tagctttctg cacagccaaa tttaacttag
     5041 cagcttccaa ttcagcctga cgcacttgca atacttgggc gtcatcttcc aatttttggc
     5101 gattagctgc caaagtagtg attgcctctt ggtttgcctt ttgtttttca gcaattgctt
     5161 ccttatcagc tttttgttgt tccaacatgc ggttattagc tgaaacaatc tcacgcattg
     5221 cattaacacg agaaacagca tcaacgattg attttgaatc taaaattgta ttaatataac
     5281 ttgaagcaga gccatcaact tgagcactac gcgcctgctc ctttaaagca ccatcacgtg
     5341 acacaatatc agctgacaaa cgctcaatat ctgccgccaa tgtctgcgat tctgcttcca
     5401 aacgagtatt ttcttctgtt aatttcgcct gttcactaac aattgcatca acttgtcctt
     5461 gaatagcatc aacttgttgt tgagcttcag cttgttgtgc tgtcaactca ctaatctgtt
     5521 gattttttgc tgcaatctga ctatctacat cattcgcact aatcacagct acataattag
     5581 cattagatag aacgactgta ctcaacataa ttgtagccaa gatttttttc ttcatatccg
     5641 aacataactc ctctatactt tctgactctc tcattttatc aaaaaaattg cgtaagtata
     5701 ttacgcaatt attacatttc tatgtcttgt ttgttattcc aaataaacgc tcaaataacg
     5761 gttgtagtac gaaaaataag gccaaattga atagtagact tggaagtaat ttattaaaaa
     5821 caaagataaa cacagacaag tttgttatat gaaaaatgcg agcaaatgag taactaataa
     5881 attcaaattg aaaaatagct actagtaaaa tcaaaatatt aattcctcgc ttgctgacag
     5941 caccttgaaa gaagaaatag atgcaatata aaactaaagg aagagttgta gtagcaatac
     6001 caatcagatt aagataacta atatcatata ccaaacctag caaagtaaat atgaataatg
     6061 aaaaaccaag agatacatag ttagcataaa aaatagctaa cataagtacc aaatgacttg
     6121 aaatagtaaa taatccgacc gaccaatttg ttaccaacgt tgaaatctgt ccatcaagta
     6181 ataaaataaa gaacaagatg ggaaacatga atatttctat cattttattg cgcatttgtt
     6241 tgacctacca ctaaaaccga ataaatattt gaaaaactag ctgtcggctc aacatatact
     6301 tctctattta aactgttact atttgattta accgataaaa ctttaccaat ttggatattt
     6361 gccgaagtcg caccagccaa atcactcgtt acaacattgc tacccactgc aatttcatca
     6421 gctgagttca actggtcaat gataaaacta tttgtatctg catcatagcc cgataaaata
     6481 ccataaattt ctttagaatc aacagaaatt ttcacaggca acttcgtgaa ttcatccgaa
     6541 ttcgtaaata aggtaacaac cgccgaatct gaactcaatg aactcacgat tccaactaat
     6601 ccaccattag caaccacaag tgcattagat gtcacaccac tagtctcacc aatattaatt
     6661 gaaatatgct ccgaccacga tgaaggagtc ctcaccaaaa ctgatcctgg aataagttgt
     6721 ttttcaggaa aatcagacac cacacctaaa ctgctacgaa gcgatgcatt ctcttctttc
     6781 aagctagtat tttcagcagc catcccttca aggctcataa tagcttcctt taattgttta
     6841 ttttcctcgt aagcgttcat caaatctgtc aagacatctt tctgctcaga aaaaaatcta
     6901 gtaggcactg aaataaccga ttgaattggc gttacaacaa ccctaacgat attatttaaa
     6961 tatggtacct gtaacccctt agagaaagtc acaaacaaaa gagaaaatga cagtaataaa
     7021 aagatagaaa caactactac taattttgaa aatttattca taatagaccc tcatagcccc
     7081 ttaccaagat acaataaaac gagaatatca agcgataatc tcgttcacta cggagaataa
     7141 gggattcgaa cccttgcgcc agttacccga cctaacgatt tagcaaaccg tcctcttcag
     7201 cctcttgagt aattctccat caatataata tgggcacgag tggaatcgaa ccaccgacct
     7261 cacgcttatc aggcgtgcgc tctaaccatc tgagctacgc gcccaagata ataaacttgg
     7321 acaaagttaa attaatggcg cgagacggaa tcgaaccgcc gacacatgga gcttcaatcc
     7381 attgctctac caactgagct accgagccaa attcttaaag aaattgcggg agcaggattt
     7441 gaacctacga ccttcgggtt atgagcccga cgagctacct agctgctcca tcccgcggta
     7501 gtagaaaagg aggatgtggg attcgaaccc acgcacgctt ttacacgcct gacggttttc
     7561 aagaccgttc ccttcagccg gacttgggta atcctccaat atatggacct tgtaggactt
     7621 gaacctacga ccgctcggtt atgagccgag agctctaacc agctgagcta aaggtccagc
     7681 aaacaagaat atatagcggc gaaggggatc gaacccccga cctcccgggt atgaaccgga
     7741 cgctctagcc agctgagcta caccgccaaa ataatataat cgggaagaca ggattcgaac
     7801 ctgcgacacc ttggtcccaa accaagtact ctaccaagct gagctacttc ccgatactat
     7861 taaaaataaa gctcccctaa cgtctccatt aagcgagtga tgcaccctag aggagtcgaa
     7921 cctctaaccg cctgattcgt agtcaggtac tctatccagt tgagctaagg gtgctaacta
     7981 ttataatctt catgccgagg accggaatcg aaccggtacg atgttgccat cgcaggattt
     8041 taagtcctgt gcgtctgcca gttccgccac cccggcctct caaagcgaac gacgggattc
     8101 gaacccgcga cccccacctt ggcaaggtgg tgttctacca ctgaactacg ttcgcaatct
     8161 ttcctaatgc cggctacatg acttgaacac gcgaccctct gattacaaat cagatgctct
     8221 accaactgag ctaagccggc taaattatat ttctcctatg cgggttaagg gacttgaacc
     8281 cccacgcccg aaagcgccag atcctaaatc tggtgcgtct gccaattccg ccaaacccgc
     8341 atatgactcg tgctgggctc gaaccagcga cccattgatt aaaagtcaat tgctctacca
     8401 actgagctaa cgagtcgaaa atatgaagca aactccgttt gctctatctc caacttcaaa
     8461 tagtctccca gactatttga acggtcccga cgggaatcga acccgcgatc ttcgccgtga
     8521 cagggcgacg tgataaccgc tacactacgg gacctatggg agttaacggg atcgaaccgc
     8581 tgaccctctg cttgtaaggc agatgctctc ccagctgagc taaactccca atttgctaag
     8641 cgactaccgt atctaacaag gggcaacccc caactacttc aggcgttcta gggcttaact
     8701 gctgtgttcg gcatgggtac aggtgtatct cctaggctat cgtcacttaa ctactgagtc
     8761 ttgtcaactc aaaattgaat atctatattc taacaagaaa ccgttcgctt gtcaatattg
     8821 actctagttt taataagtaa ttgtattcga actaaaaagc tagtgattta gaaaaatcgc
     8881 cttgaagtct aaccgacttc cgcgttgatt tcctaaaatc atacgctttt cttaacgttc
     8941 tcattactta ttcttggata agtcctcgag cgattagtat tggtccgcta catgtgtcgc
     9001 cacacttcca cttccaacct atctacctga tcatctctca gggctcttac taacataaag
     9061 ttatgggaaa tctcatcttg aggtgggttt cacacttaga tgctttcagc gtttatcccg
     9121 tccctacata gctacccagc gatgcctttg gcaagacaac tggtacacca gcggtaagtc
     9181 cactctggtc ctctcgtact aggagcagat cctctcaaat ttcctacgcc cgcgacggat
     9241 agggaccgaa ctgtctcacg acgttctgaa cccagctcgc gtgccgcttt aatgggcgaa
     9301 cagcccaacc cttgggaccg actacagccc caggatgcga cgagccgaca tcgaggtgcc
     9361 aaacctcccc gtcgatgtga actcttgggg gagataagcc tgttatcccc agggtagctt
     9421 ttatccgttg agcgatggcc cttccatacg gaaccaccgg atcactaagc ccgactttcg
     9481 tccctgctcg agttgtagct ctcgcagtca agctccctta tacctttaca ctctgcgaat
     9541 gatttccaac cattctgagg gaacctttgg gcgcctccgt taccttttag gaggcgaccg
     9601 ccccagtcaa actgcccgtc agacactgtc tccgataggg ataacctatc cgggttagag
     9661 tagccataac acaagg
//
LOCUS       DASGAC010000074         9654 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.074, whole genome shotgun sequence.
ACCESSION   DASGAC010000074 DASGAC010000000
VERSION     DASGAC010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9654
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.074"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            85..942
                     /locus_tag="U1335_001319"
     CDS             85..942
                     /locus_tag="U1335_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEM5231786.1"
                     /translation="MKLKKLFSLATAALSVGVLAACGSSSTSSSSDSSATTVRVGVMS
                     LSDSEQARWDKVQEILGDEVKLEFTQFTDYSQPNKAVAENEVDINAFQHYNFLNNWNE
                     ENGEDLVAIADTYIAPIRLYSGTADGKNKYTKVEEIPDGAEIAVPNDPTNESRALYLL
                     QAAGLIKVGVSGTELATIADITENKKNLKITELDASQTASSLSSVDAAVVNNTFVLEA
                     GLDYKNALYKEQKDENSKQWYNLIAARSDWEESEQAVAIKKIIEAYHTDEVKKVIEET
                     SDGMDEPVW"
     gene            1099..2466
                     /locus_tag="U1335_001320"
     CDS             1099..2466
                     /locus_tag="U1335_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEM5231787.1"
                     /translation="MADSKVQLFENDAIIQNYFEKLKVLISKKSIFAQQIGLLDVATY
                     LKEMFEEAGAEVVLDDSYAAPFVMATFKASVPDAKTLIFYNHYDTVPADADQVWEKGN
                     PFELTISEGYIYGRGVDDDKGHITARLSALKKYQSRQNGHLPVNVIFIMEGAEESASV
                     DLDKYLSKYKEHLIGADLLVWEQGHRNSLHQLEIAGGNKGIVTFDLQVKSADLDIHSS
                     YGGVIDSASWYLLSALQSMRAADGRILVDGIYEQVQEPNERELALVEEFALATSQSVT
                     DIYGLTFPTLVEDRREFLKRLYFEPSITIEGLSTGYLGQGVKTIIPAQASAKMEVRLV
                     PGLEPHDVLDKIRKHLDKHGFDKVEVVFTLGEMSYRSDMSHPAIVNVIELAKKLTPEG
                     VAVLPTSPGTGPMHTVFHALGVPIAGFGLGNANSRDHAGDENVSIADYYSHVELVEEL
                     IASYE"
     gene            2459..3523
                     /locus_tag="U1335_001321"
     CDS             2459..3523
                     /locus_tag="U1335_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEM5231788.1"
                     /translation="MSKEMIKLDNIDVTFQQKKRTIEAVKDVTIHINQGDIYGIVGYS
                     GAGKSTLVRVINLLQVPTAGKITIDEDVIYEGEKVTLTPAQLRSKRREIGMIFQHFNL
                     MAQMTAEENVAFALKHSGLSKEEKKEKVAKLLDLVGLSDRAENYPAQLSGGQKQRVAI
                     ARALANDPKILISDESTSALDPKTTKQILALLQELNEKLGLTIVMITHEMQIVKDICN
                     RVAVMQDGRLIEEGSVLEIFSHPKEELTQDFIKTATGIDEALVKIYQQDIVKNLPENS
                     ILVQLKYAGSNTDTAIVNDLYKFYQVSANILYGNIEILDHTPVGEMVVILSGEPGQLH
                     RAIEAVMEARVEVTILKGAN"
     gene            3524..4216
                     /locus_tag="U1335_001322"
     CDS             3524..4216
                     /locus_tag="U1335_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5231789.1"
                     /translation="MLEWIQTNFPDIYKLGWDGQTGWLTHFNLTLYMTFVSFAFGGFL
                     GLVSGLFLVLTGPHGVIANKPAYWILDKVASIFRAIPFIILLAAIAPLTKIIVGKTIG
                     TEAALVPLALSVFPFFARQVEVVLSELDRGVIEAAQASGATFWDIVLVYLREGLPDLI
                     RVTTFALVSLVGYTAMAGAIGAGGLGQVALSYGYLRYNDDVTFLATLLILVIIFAIQF
                     IGDFLTRKISHR"
     gene            4398..5102
                     /locus_tag="U1335_001323"
     CDS             4398..5102
                     /locus_tag="U1335_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="B3/4 domain-containing protein"
                     /protein_id="HEM5231790.1"
                     /translation="MSQFIIDSSFWNLFPEAKIGVLLLKDYKTPAQSPDELVKLLEES
                     NGIAQKFLTEDTFSENEVIRTYRQAYQKFKTKKGARSSIEALLKRSTSDRPVTTISPL
                     VDIYNAASLRFGLPCGAEDLDTFVGNLQLTVTEGGDEFYLIGDENNNPTLPGEVCYKD
                     DKGAVCRCFNWRDGERTMITDETKNAFLVMELVNSDRVEDLENALDFISQHAETFLGV
                     VPEKYLLDCDRPAIAL"
     gene            5411..6172
                     /locus_tag="U1335_001324"
     CDS             5411..6172
                     /locus_tag="U1335_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009659017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEM5231791.1"
                     /translation="MKNFYLVDSQEQLFNYQQFVSKYEAKWHDYIHFLRKEYQVRDLP
                     QALIWANEEAARKLLGQSPVPAYTNDIRMVMTPDLAVWKKIYQHQLDSYENSPDLQTL
                     SAHYKGLSENHLLQIIGHELAHWSDLFLDDFADYDANIWFEEGMVEYISRQYFLTEEE
                     FAQERFCNQLLVDLFQEKHGWHSLDAFGKSTYEGDYASIFYEYWRSFLTIDQLVEKVG
                     SVQALFETYHKWAQSDQSVSLLNWFVQEELLEKEI"
     gene            6363..7280
                     /gene="glyQ"
                     /locus_tag="U1335_001325"
     CDS             6363..7280
                     /gene="glyQ"
                     /locus_tag="U1335_001325"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018163989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEM5231792.1"
                     /translation="MSKKLTFQEIILTLQQFWNEQGCLLMQAYDTEKGAGTMSPYTFL
                     RAIGPEPWNAAYVEPSRRPADGRYGENPNRLYQHHQFQVVMKPSPSNIQELYLESLKR
                     LGINPLEHDIRFVEDNWENPSTGSAGLGWEVWLDGMEITQFTYFQQVGGLATGPVTAE
                     VTYGLERLASYIQEVDSVYDIEWADGVKYGEIFIQPEYEHSKYSFEVSDQDMLLENFT
                     KFEKEAERALEEGLVHPAFDYVLKCSHTFNLLDARGAVSVTERAGYIARIRNLARVVA
                     KTFVAERKKLGFPLLDEATRAELLKEDAE"
     gene            7280..9316
                     /locus_tag="U1335_001326"
     CDS             7280..9316
                     /locus_tag="U1335_001326"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017768433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEM5231793.1"
                     /translation="MTKNLLVELGLEEIPAYIVTPAMHQLRDRMATFLTDNRLAFDSI
                     DVFSTPRRLAVRVRGLADQQTDLTEDFKGPAKKIALDADGNFTKAAEGFVRGKGLTTA
                     DIEFREIKGEEYVYVTKHEAGQPAKAVLAGIPEVLKAMTFPVSMNWASNKFAYIRPVH
                     TLTVLLDDEALDMDFLDISSGRISRGHRFLGNETEIASADSYEADLRAQFVITDPAER
                     QNMIVEQIKAIEDKHNVIVEIDEDLLNEVLNLVEYPTAFMGSFDTKYLEVPEEVLVTS
                     MKNHQRYFVVRDKAGKLLPNFISVRNGNDQYLDNVIKGNEKVLVARLEDGEFFWREDQ
                     KLNIADLVERLKVVTFHEKIGSLYEHMERTKVIAEKLADLAGLSVDEKADVARAADIY
                     KFDLLTGMVGEFDELQGIMGEKYALLAGEKPAVAAAIREHYLPNSAEGELPESKVGAV
                     LALADKFDTLLSFFSVGLIPSGSNDPYALRRATQGIVRILEAFGWEIPLDQLIAELYS
                     LNFASLTYDNQPAVMDFIRARVEKMMDKAIPKDIREAVLASSTFVVRLQLAASSAIFQ
                     KSKEADYKEAVENLSRVFNLAEKAEATAIDEALFENEQEKALAAAVVGLELTEDMAGN
                     LDKLFALSPVIAAFFDNTMVMVDDAAVKANRLALLKALADKASAVAVFNLLNSK"
     gene            9326..9583
                     /locus_tag="U1335_001327"
     CDS             9326..9583
                     /locus_tag="U1335_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF896 family protein"
                     /protein_id="HEM5231794.1"
                     /translation="MEQAKIDRINELAKKKKAGTLTPEEKVEQAQLREEYIEGYRRAI
                     RHHIEGIKLVDEDGNDVTPEKLRQVQREKGLHGRSLDDPNS"
BASE COUNT         2726 a         1881 c         2358 g         2689 t
ORIGIN      
        1 taactttcta taaaaaaagt caattagtca gaaagaacat tctgtgttaa gatagataca
       61 gttctaattt aaggagatca ttttatgaaa ttaaaaaaat tgtttagttt ggcaacagct
      121 gctttatcag taggtgtact tgctgcgtgt ggtagctcgt ctactagctc ttcatccgat
      181 tcttcagcaa caactgttcg tgtgggtgtg atgagcttga gcgattctga gcaagcccgt
      241 tgggataaag ttcaagaaat acttggggac gaggtgaagt tggagttcac tcaatttaca
      301 gattactcac aaccaaacaa ggcagtagct gaaaacgaag tagacatcaa tgctttccaa
      361 cactacaact tcttgaataa ctggaatgaa gaaaatggtg aagacttggt tgctattgcg
      421 gatacttata tcgcaccaat ccgtctttac tcaggtacag ctgatggaaa aaacaagtac
      481 actaaagtag aagaaattcc agatggtgca gaaattgcgg ttccaaacga cccaacaaac
      541 gaaagccgtg ccctttacct tcttcaagca gctggtttga tcaaggttgg tgtatctggt
      601 acagaattgg caacaattgc tgatattact gaaaacaaga aaaacttgaa gatcactgag
      661 ttggatgcaa gccaaacagc aagctcactt agctcagttg atgcagcagt tgtaaacaac
      721 acatttgtgt tggaagctgg cttggattac aagaacgctc tttacaaaga gcaaaaagat
      781 gaaaattcaa aacaatggta taacttgatt gccgctcgta gcgattggga agaatcagaa
      841 caagcagtag cgattaagaa aattatcgaa gcctaccaca cggatgaagt gaaaaaggtt
      901 attgaagaga cttcagacgg tatggatgaa ccagtttggt aaaatgtaaa taggttgagg
      961 actgggcaga attgttcagc cctctatctg tttttataga gataagaaaa aatctcttaa
     1021 ccaaagtcag aaatgcggga gaatatttga ttttggttag tagatttaat tggttttcat
     1081 tgagtatgag gagaaagtat ggcagatagt aaagttcaat tatttgaaaa tgatgcgatt
     1141 attcaaaatt attttgaaaa gttgaaggtc ttgatttcaa agaaatctat ttttgctcag
     1201 cagattggtt tgttggatgt ggcgacttat ttgaaagaaa tgtttgaaga agctggtgca
     1261 gaggttgttt tggatgatag ttatgcagca ccctttgtca tggctacgtt taaggcttcg
     1321 gtgccagatg cgaaaacatt gattttttac aatcactatg acacggttcc tgctgatgcc
     1381 gatcaggttt gggagaaggg caatcctttt gaattgacta tttctgaagg ttatatctat
     1441 ggtcgcgggg tggacgatga caagggccat atcacagctc gtctgtcggc cttgaaaaaa
     1501 tatcagtcta gacagaatgg ccatttacca gtcaatgtga tttttattat ggaaggggca
     1561 gaggagtcag cttctgtcga cttggacaaa tacctttcaa aatataaaga gcatttgatt
     1621 ggtgctgatt tactggtctg ggagcagggg catcgcaata gcctacatca gctagaaatt
     1681 gctgggggaa ataagggaat tgtgaccttc gatcttcagg tcaaatcagc tgacttggat
     1741 attcattctt cctatggtgg tgtcattgat tcggcaagct ggtatttatt atcagcactt
     1801 caatccatgc gggctgcaga tggacgaatt ttggttgatg gtatttacga acaagtgcaa
     1861 gaaccaaatg aacgtgaact agccttagtt gaggaatttg cactggctac cagtcagtct
     1921 gtgacggata tttatggatt aacctttcca accttggtag aagatcgtcg tgagtttctg
     1981 aagcgtttgt attttgagcc atcgattacc attgaaggct tgtcaactgg ctatcttggt
     2041 caaggtgtca agaccatcat accagctcag gcttctgcga agatggaagt ccgtctggta
     2101 cctgggttgg agccgcatga tgtattagat aagattcgta agcatttgga caaacatggt
     2161 tttgacaaag ttgaggttgt cttcactcta ggagagatga gttaccgaag tgacatgtcc
     2221 caccctgcca ttgtcaatgt gattgaattg gccaaaaaat tgacaccaga aggagttgct
     2281 gtcttgccga cgtcaccggg gacaggtccc atgcacacag tctttcatgc tctaggtgta
     2341 ccgattgcgg gctttggtct gggaaatgcc aacagtcgtg accatgccgg tgatgaaaat
     2401 gtcagcatcg ctgactacta tagccatgtt gaattagtag aggagttaat tgcaagttat
     2461 gagtaaggaa atgattaagc tagataatat tgatgtaact ttccagcaga aaaaacggac
     2521 catcgaggcg gtaaaagatg tcaccatcca tatcaatcaa ggggatattt acggtatcgt
     2581 agggtattct ggagcaggga aatctaccct tgttcgagtg attaatttat tgcaggtgcc
     2641 gacagcgggt aaaattacta tcgatgagga tgtaatttac gagggagaaa aggtcacact
     2701 taccccagct caattgcgga gcaaacgccg tgaaattggc atgattttcc agcatttcaa
     2761 tctgatggcg cagatgacgg cagaagaaaa cgtagccttt gcccttaagc attcgggttt
     2821 gagcaaggaa gagaagaagg aaaaagtagc caaactcttg gacttggttg ggctttctga
     2881 ccgtgctgaa aactatccag ctcagttgtc tggtggtcaa aagcaacgtg ttgccattgc
     2941 gcgagccttg gcaaatgacc ctaaaatctt gatttcagat gagtcaactt ctgccttgga
     3001 tccgaagacg accaaacaga ttttggcact cttgcaggag ttgaatgaaa aattgggctt
     3061 gaccattgtt atgattaccc atgagatgca gattgtaaaa gacatttgta accgtgtggc
     3121 tgttatgcag gatggtcgct tgatcgaaga aggttcagtt ttagaaatct tctctcatcc
     3181 aaaggaagaa ttgacacagg atttcatcaa aacagcaaca ggaattgatg aggccttggt
     3241 gaaaatttac cagcaggata ttgttaagaa tttgcctgag aacagtatct tagttcaatt
     3301 gaaatatgct ggttcaaata cggatacggc gattgtgaat gacttgtaca aattctatca
     3361 agtatctgcc aatattcttt atggcaatat tgaaattttg gaccatacgc cagtcggtga
     3421 gatggtggtg atcttatcag gtgaaccagg tcagttgcac cgtgcgattg aggcagtgat
     3481 ggaggcgcgt gtggaagtga cgattttgaa aggagcaaac tagatgttag aatggattca
     3541 aacgaatttt ccagatattt ataaattggg ctgggatggt cagacaggtt ggttaacaca
     3601 ttttaatttg accctctata tgacctttgt ttcctttgct ttcggtggtt ttttgggctt
     3661 ggtgtctggt ttgttcttgg ttttgacagg tccacatgga gttatcgcca ataagcctgc
     3721 ctactggatt ttggataagg tagcttcgat tttccgtgcc attcctttca ttattttgtt
     3781 ggcggccatt gctcctttga cgaaaattat tgttggaaaa accattggta cagaggcagc
     3841 tttggtgccg ctcgcccttt cagtctttcc gttttttgcc cgtcaggttg aagtggtctt
     3901 gtcagaattg gaccgtggtg tcattgaggc ggctcaggca tcaggtgcga ctttctggga
     3961 tattgtcctt gtctatctgc gtgagggtct gcctgacttg attcgtgtga cgacatttgc
     4021 cttggtttcc ttggtcggct atacagccat ggcaggagct atcggagcag gtggtttggg
     4081 acaagttgca ctatcctatg gttacttgcg ctataatgat gatgtgacct ttttagcaac
     4141 tcttttgatt ttggttatca tctttgccat tcaattcatt ggtgatttct tgaccaggaa
     4201 gattagtcat agatagttat ttagctgtgt tttttcaaat tttggatagt ccttgactta
     4261 tttaaagcat ttttatacaa taatgttaat taaataaaca ctgccaccgg gtagtcatgc
     4321 aacagcattt tatgaacgtc gttaggtctt agaagatgtt catagggtgc tgatttttct
     4381 ataaaaggag tgagaatatg tcacaattta ttattgattc atcgttttgg aatttatttc
     4441 cagaggcaaa aattggagtt ctattattga aagattataa aacgccagcg caatcgcctg
     4501 atgaattagt gaaattactg gaagaaagca acggaattgc ccagaaattt cttacggaag
     4561 atacctttag tgagaatgag gtcattcgca catatcgtca agcctatcaa aaatttaaaa
     4621 caaaaaaagg cgcgcgttct agtatcgaag cgcttttgaa gcgttcaact agtgaccgtc
     4681 cagtcacaac aatttctcca ttagtggaca tttataatgc ggcaagcttg cgtttcggtc
     4741 ttccatgtgg tgctgaagat ttagatacat ttgtaggcaa tcttcaacta acggtcactg
     4801 agggtggaga tgaattctat ctcattggtg atgaaaacaa taacccaact ctaccaggtg
     4861 aagtttgcta taaggacgat aaaggcgccg tttgtcgctg tttcaattgg cgcgatggtg
     4921 agcgaaccat gattacggat gagacaaaga atgctttctt ggtcatggag ttggtcaatt
     4981 ctgatagagt agaagatttg gaaaatgccc tagattttat cagtcaacac gcagagacct
     5041 tcttgggagt agtaccagaa aaatatctac tagattgcga taggcctgca atagccttgt
     5101 aggatttgtc agtgagattg tgttcggata aatagtggtc tttctagaca aacgctgatt
     5161 tttctgctac aatactaagc atgaaagaag gttgtttcaa aagcctgtct agcgagcttg
     5221 ggagagtgaa agccaagcca gtcttgaaat aattggcgct ttcccagtcg agaccctgtc
     5281 cgactgctta tcaatcatac aaatgaagta ataaattagg gtggaaccgc gttctcaacg
     5341 cccctatgtc tgttgacagg ggaagagaat gtggttcttt ttctgtttta ccagagatga
     5401 aagagaagat atgaagaatt tttatctagt ggatagccaa gaacagctgt ttaactatca
     5461 gcaatttgtc tcaaaatacg aggcaaaatg gcatgactat atccattttc taaggaagga
     5521 atatcaagtt cgtgatttgc cccaagccct tatctgggca aatgaagaag ccgcaagaaa
     5581 attacttggc caaagtcccg taccagccta cactaatgat atccgcatgg tcatgacacc
     5641 agacctagca gtttggaaaa agatttacca gcatcaacta gatagctacg agaacagccc
     5701 agacttgcag acattgagtg ctcactacaa aggtttgtcg gaaaatcatc tgttgcaaat
     5761 tatcggtcat gagctggcgc attggtcaga cctttttctg gatgactttg cggactatga
     5821 tgcaaacatc tggtttgaag agggcatggt cgagtacatc agcagacagt attttttgac
     5881 agaagaagag tttgctcaag agcggttctg taatcagctc ttggttgacc tctttcaaga
     5941 aaaacacggc tggcattcct tggatgcttt tggaaaatcc acttacgaag gagattacgc
     6001 gagtattttt tacgagtact ggcgaagttt tctcaccatt gaccagttag tagagaaagt
     6061 aggttcggtc caagcacttt ttgaaaccta tcataaatgg gcgcagtcag accaaagcgt
     6121 ttcgttactc aactggtttg tgcaggaaga attattagaa aaagaaattt aaaaagaaac
     6181 aggagtaact tatggcaaaa aaacttacat ttcacagcgt cagtggcata gtctcctttc
     6241 agtcgaattg ccacacgctc atcgctaggg cgactgagct agacgctgta ctagttcgcc
     6301 tttcctagcg gtatcggcta ggaaggctca cgtcgcaatc aatttaaaga aagaggaaat
     6361 atatgtctaa aaaacttacc ttccaggaaa ttatcctgac cttacaacaa ttttggaatg
     6421 agcaggggtg cttgctcatg caggcttatg atacggagaa gggtgcgggt accatgagtc
     6481 cgtatacctt cttgcgtgcc atcggtcctg agccatggaa tgcggcttat gttgagccat
     6541 ctcgtcgtcc tgcggacggt cgttacgggg aaaatccaaa ccgtctctac caacaccacc
     6601 agttccaagt ggttatgaaa ccatcgccat ctaatatcca agaactctat ttggagtctt
     6661 tgaagcgttt gggcatcaat cccttggaac atgatattcg ttttgttgag gacaactggg
     6721 aaaacccgtc aacaggttca gctggtctgg gctgggaagt ttggttggat ggtatggaaa
     6781 tcacgcagtt tacctatttc caacaggttg gtggcttggc gacaggtcct gtcacagccg
     6841 aagtaaccta tggtttggag cgtctggctt cttacattca agaggttgat tccgtttacg
     6901 atatcgagtg ggcagacggt gtcaaatacg gtgaaatctt tatccagcca gagtatgagc
     6961 attcaaaata ttcctttgaa gtatccgacc aagatatgct ccttgaaaac ttcactaagt
     7021 ttgaaaaaga agcagagcgg gctttggaag agggcttggt tcacccagcc ttcgactatg
     7081 tgctcaaatg ctctcatacc tttaacctgt tggatgcccg cggtgccgtg tctgtaactg
     7141 agcgtgcagg ctatattgcc cgtatccgta atcttgcccg tgtcgttgcc aagacctttg
     7201 tggcagagcg gaaaaaactc ggtttcccac ttttagacga agcaacacga gcagaattgt
     7261 tgaaggagga cgcagaataa tgaccaaaaa tttacttgtt gaacttggtt tggaagaaat
     7321 tcctgcctac atcgtaaccc cagccatgca ccagttgcgt gatcgcatgg caaccttttt
     7381 gacagacaat cgcttggctt ttgacagcat tgatgtcttt tcaacgccac gccgtttggc
     7441 tgttcgtgtc cgtggtttag cagaccagca gactgatctt acagaagatt tcaagggtcc
     7501 tgctaagaag attgccttgg atgcagacgg aaacttcact aaagctgcgg aaggctttgt
     7561 ccgtggtaaa ggcttgacga ctgctgacat cgaattccgc gagatcaagg gcgaagagta
     7621 tgtctacgtg accaagcacg aagctggtca gccagctaag gcagtcttgg ctggcattcc
     7681 agaggtcttg aaggctatga ccttcccagt cagcatgaac tgggcgtcca acaaattcgc
     7741 ctacatccgt cctgtccaca ccttgaccgt tctcttggac gatgaggcac tggatatgga
     7801 tttcttggac atttcatcag gtcgcatcag ccgtggtcat cgtttccttg gaaatgaaac
     7861 tgagattgca agtgcagatt cttacgaggc agacttgcgt gcacagtttg tcattacaga
     7921 ccccgcagag cgtcaaaata tgattgtcga gcaaatcaag gctatcgagg acaaacacaa
     7981 cgtgatagtt gagattgatg aagatctgct caatgaagtt ctcaacttgg tcgagtaccc
     8041 aactgccttt atgggctcct ttgataccaa gtacttggaa gtgccagaag aagtcttggt
     8101 aacttccatg aaaaaccacc agcgttactt cgtggtgcgt gataaggctg gcaaactctt
     8161 gccaaacttc atctctgtcc gcaacggtaa cgaccagtac cttgacaatg tcatcaaagg
     8221 aaatgaaaaa gtcttggtgg cacgtttgga agacggcgag ttcttctggc gtgaagacca
     8281 aaaactcaat attgctgact tggtggaacg cctcaaagtc gtgaccttcc atgaaaaaat
     8341 cggctcactt tacgagcaca tggaacgcac caaagttatc gcagaaaaac tggctgactt
     8401 ggcaggcttg tctgtggatg agaaagcaga tgtggcacgt gcggcggaca tctacaagtt
     8461 tgacctcttg acaggcatgg tcggcgagtt tgatgaattg caagggatta tgggtgagaa
     8521 gtacgctctt cttgcagggg aaaaacctgc ggtggcagca gcaatccgtg agcactactt
     8581 gccaaactca gcagaaggcg aattgcctga aagcaaggtc ggtgcggtct tggcactggc
     8641 tgacaaattc gacaccctcc tatctttctt ctcggttggc ttgattccat ctggttccaa
     8701 cgacccttac gctcttcgtc gtgcgacaca gggtatcgtg cggatcttgg aagcatttgg
     8761 ttgggaaatt ccattggatc agttgattgc ggagctctac agcttgaact ttgctagctt
     8821 gacttacgac aaccagccag ctgttatgga ctttatccgt gcccgtgtag agaagatgat
     8881 ggataaggcc attccgaaag acatccgcga ggctgtactg gctagctcaa cctttgtggt
     8941 cagactgcaa ctggcagcca gctctgctat tttccaaaaa tcaaaagagg ctgactacaa
     9001 ggaagccgtg gaaaacttgt cacgggtttt caacttggct gaaaaggcgg aggcgactgc
     9061 gattgacgag gccctcttcg aaaacgagca ggagaaagcc cttgctgcag cagtggttgg
     9121 cttggagttg acagaagata tggcgggcaa cttggacaag ctctttgctc tcagcccagt
     9181 catcgcggcc ttcttcgaca ataccatggt tatggtagat gacgcagcag tcaaagccaa
     9241 ccgcttggct ctcttgaaag ccttggcgga taaggcaagt gctgtggcgg tcttcaatct
     9301 cttgaatagc aagtaggagg caaatatgga acaagcaaaa attgatcgca tcaatgaatt
     9361 ggctaaaaag aaaaaagctg gtaccttgac accagaggaa aaagttgaac aggctcagct
     9421 cagggaagaa tacatcgagg ggtatcgtcg agcaatccgt catcatattg aggggattaa
     9481 gctggttgat gaggacggca atgatgtgac gccagagaaa ctccgtcaag tccaacgtga
     9541 aaaaggcttg catggccgta gtttggatga tccaaattcc taagaataac gtggtaaatt
     9601 ctcaaagtaa gttctagttc ccgtccttcc agaagttact ttgagaaaac tgca
//
LOCUS       DASGAC010000075         9486 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.075, whole genome shotgun sequence.
ACCESSION   DASGAC010000075 DASGAC010000000
VERSION     DASGAC010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9486)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9486)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9486
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.075"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(131..583)
                     /locus_tag="U1335_001328"
     CDS             complement(131..583)
                     /locus_tag="U1335_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEM5231795.1"
                     /translation="MIAVKGIVNKARKEFYIKLWDREDWHQEGMMTLFELLEDQPWLA
                     DEQEQLYCYFKVKFRNRVKDRVRRQESQKRKFDRMPHEDIHDLSHVIQSPGLVNDELL
                     MLRSALRDYRKNLSNDQLENYEKLISGQSFNGRRKMIRDLQIHLKDFC"
     gene            complement(696..1268)
                     /locus_tag="U1335_001329"
     CDS             complement(696..1268)
                     /locus_tag="U1335_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002998981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEM5231796.1"
                     /translation="MNNLKVEDCMKEELGKYLSQDPDINRILEIVKDLDLADSWICAG
                     TIRNFIWNHYRFDKKTDIDIIFYDEKISYQETKEIEANLHQRYSDYQWEVKNQVFMHI
                     HSPDTPPYQSSKDAIEKFPERCTAIGVRQTKNGNLEIFAPYGLDDIYHYLVRPTPHFL
                     VNSKRMDIYKKRMKKKNWKEQWPIITIKYE"
     gene            complement(1450..1767)
                     /locus_tag="U1335_001330"
     CDS             complement(1450..1767)
                     /locus_tag="U1335_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008809966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1292 domain-containing protein"
                     /protein_id="HEM5231797.1"
                     /translation="MAHHHDHEHDHNHDERELITLVDDQGNETLFEILLTIDGQEEFG
                     KNYVLLIPASAEEDENGEVEIQAYSYIENENGTEGDLQPIPEDATAEWDMIEEVFNSF
                     MEE"
     gene            complement(1779..2198)
                     /gene="ruvX"
                     /locus_tag="U1335_001331"
     CDS             complement(1779..2198)
                     /gene="ruvX"
                     /locus_tag="U1335_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEM5231798.1"
                     /translation="MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLER
                     LTELVEQYKVDKFVVGLPKNMNNTSGPRVEASQAYGNLLIEQFKLPVDYQDERLTTVA
                     AERMLIEQADISRGKRKKVIDKLAAQLILQNYLDRTF"
     gene            complement(2198..2464)
                     /locus_tag="U1335_001332"
     CDS             complement(2198..2464)
                     /locus_tag="U1335_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IreB family regulatory phosphoprotein"
                     /protein_id="HEM5231799.1"
                     /translation="MGFTEETVRFRLDDTDKQEISKTLTGVYRSLEEKGYNPINQIIG
                     YVLSGDPAYIPRYNDARNQIRKHERDEIIEELVRYYLKGNGIDL"
     gene            complement(2571..2969)
                     /gene="spx"
                     /locus_tag="U1335_001333"
     CDS             complement(2571..2969)
                     /gene="spx"
                     /locus_tag="U1335_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017768833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator Spx"
                     /protein_id="HEM5231800.1"
                     /translation="MIKIYTVSSCTSCKKAKNWLNAHQLSYNEHNLAKEAITKEEILN
                     ILTKTENGIASIVSSKNRYAKSLDFDIEDLSVNEVIDLIASNPRILKSPILIDEKRLQ
                     VGYKEDDIRAFLPRAVRNVENAQARMRAAL"
     gene            complement(3129..4280)
                     /gene="recA"
                     /locus_tag="U1335_001334"
     CDS             complement(3129..4280)
                     /gene="recA"
                     /locus_tag="U1335_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEM5231801.1"
                     /translation="MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLG
                     ERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGG
                     IAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
                     AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFG
                     NPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEV
                     VVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGSENAKKFLAGNPAIF
                     DEIDRKIRVHYGLIEGEEAPEVVTEEAPVVAEEIQDVVLDLDGGIELEE"
     gene            complement(4332..5513)
                     /locus_tag="U1335_001335"
     CDS             complement(4332..5513)
                     /locus_tag="U1335_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HEM5231802.1"
                     /translation="MKAELIAVGTEILTGQIINTNAQFLSEKCAELGIDVYFHTAVGD
                     NEQRLLSVLEVASQRSDLVILCGGLGPTEDDLTKQTLAAFLGRKLVFDEKAMAKLDRF
                     FASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
                     FTESLQPLLDQSSQQLYSRVLRFFGIGESQLVTVLADLIDNQTDPTIAPYAKIGEVTL
                     RLSTKAKSQEEADLRLNQLEEDILQRDKLREYFYAYGEDNSLVKTVATRLAEKKQTIA
                     IVEQGTGGLLQAEVSLALAGQPYFSGGKVIGQLGTESGRLSEEADCIRQELQADLGLS
                     VSVVIKPESTRDNVLAKVYLALASTSGISQKEIDLGGYSWQYLRQLACLQALDFVRNT
                     L"
     gene            complement(5550..6119)
                     /locus_tag="U1335_001336"
     CDS             complement(5550..6119)
                     /locus_tag="U1335_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HEM5231803.1"
                     /translation="MSRCAWVNPNNPLYIAYHDEEWGNPLHDEQSLFELLCLESYQAG
                     LSWEIVLNKRQAFRSAFFNYDIQKVAAMTDSELDSLLTNPDIIRHKAKLYATRANAQA
                     FLRVQEEFGTFDTYLWEWVNFTSIDNPVKSFRELPTKNDLSERISKDLKKRGFKFVGP
                     VCIYSYLQAAGLLNEHEETCEIGKKLRTN"
     gene            complement(6747..7337)
                     /gene="ruvA"
                     /locus_tag="U1335_001337"
     CDS             complement(6747..7337)
                     /gene="ruvA"
                     /locus_tag="U1335_001337"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000271492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEM5231804.1"
                     /translation="MYDYIKGILTKITAKYIVVETHGVGYLLQVANPYAYSGQVQQEV
                     TVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGIGPTTALAIIAVDDNDGLVRAIE
                     QKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
                     ALGYRPAELKKIKKFFDGTSDTAENYIKSALKMLMK"
     gene            complement(7376..9313)
                     /gene="mutL"
                     /locus_tag="U1335_001338"
     CDS             complement(7376..9313)
                     /gene="mutL"
                     /locus_tag="U1335_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HEM5231805.1"
                     /translation="MSHIIELPEILANQIAAGEVIERPASVVKELVENSIDAGASQIE
                     ISVEEAGLKMIQITDNGEGIAPDEVALALRRHATSKIKNQSDLFRIRTLGFRGEALPS
                     IASVSHMNIETATADSAHGLHLEAKGGVIEKEEPVSRPVGTQITVSDLFYNTPARLKY
                     VRSQQAELSHIVDVVNRLSLAHPEIAFALVNEGRELIRTAGTGKLRQAISGIYGIASA
                     KKMVEIEAEDLDFQISGYVSLPELTRANRNYISIFINGRYIKNFLLNRAILEGYGSKL
                     MVGRFPLAVISIEIDPYLADVNVHPTKQEVRISKEKELMTLIREAISQALKEQDLIPD
                     ALENLAQSSTRPKVKAEQGTLPLREPKIYYDTIKQDFFLKPDVVAEDVKPLEEDRQEI
                     VESPAENKPTSVQFAERQSVESEDQEHPNLSAKELAKLADKLDREETSTFPELEYFGQ
                     MHGTYLFAQGKTGLYIIDQHAAQERVKYEYYREKIGQVDNSAQQLLVPYIFEFPQNDA
                     LDLVHKMDALRQVGVNLEEYGANQFILREHPIWMKEEEIESGIYEMCDMLLLTDQVSI
                     KQYRAELAIMMSCKRSIKANHALDDYSARDLLRQLSYCQNPYNCPHGRPVLVHFSKSD
                     MEKMFRRIQENHTSLRELGKY"
BASE COUNT         2560 a         2212 c         1721 g         2993 t
ORIGIN      
        1 aaaaacaggt ttttaaccta ctttcaaacc tgcttatctg ttatggtttt taatgtctca
       61 gtcaattgac agagagtggc tcatacttat agggagttcc cttgcttact tatttttatt
      121 tagcaaatta tcagcaaaaa tccttcaaat ggatttgtag atcgcgtatc atttttcgac
      181 gaccattgaa actctgacca ctaattagtt tttcataatt ttcaagctgg tcattgctga
      241 gattcttacg ataatctctc aaggcacttc tcaacattaa cagctcatca ttgactaaac
      301 ctggcgattg tataacgtga gataaatcgt gaatatcctc atgcggcatg cggtcaaact
      361 tacgcttctg actttcttgt ctgcgtacac ggtctttgac ccgatttcta aatttcactt
      421 taaaatagca atacaactgt tcttgctcat cagctaacca cggttgatct tccaacaatt
      481 caaataaggt catcatgccc tcttgatgcc aatcttccct gtcccatagc ttaatataaa
      541 actcttttcg agccttgttg acaatccctt ttacggctat catagacctt ttcaaatttc
      601 atcatcccat ctcctctgtt tgatggttta agtttatcga aaaggcacga tttccaacag
      661 gacatttttg tctactaatt agtaaatatg gtttatcatt cgtattttat agttattata
      721 ggccattgtt ctttccagtt tttctttttc attcgtttct tatatatgtc catacgttta
      781 gaattgacga gaaaatgagg agttggtcgt actaaataat gatagatatc atctaatcca
      841 taaggtgcaa aaatttcgag attcccgttt tttgtctgac ggacaccgat tgcggtacac
      901 ctttcgggaa atttttctat tgcatctttt gacgattgat atggaggtgt gtcagggcta
      961 tggatgtgca taaatacttg attcttaact tcccactgat agtccgaata tctttgatgc
     1021 aaatttgctt ctatttcttt cgtttcttga taggatattt tttcatcgta aaagatgata
     1081 tcaatatccg tttttttatc aaaacgatag tgattccaga taaaattacg aattgttccc
     1141 gcacaaatcc atgaatccgc taagtctaaa tcctttacaa tctccaaaat cctattgata
     1201 tcagggtctt gcgataaata ttttcccaac tcttctttca tacaatcctc taccttcaag
     1261 ttgttcattg attttagtta ttttttctag cttccttaag aaatatcatt ctaacgacag
     1321 ggagcagata aaacattcac cagaccttta ttcgctttct tgttttcagg ctcatgataa
     1381 aaaggtccac tggaccttaa ttcgctttct tgttttcagg ctcatgataa aaaggtccac
     1441 tggacctttt tattcctcca taaagctgtt gaagacttct tcaatcatat cccattctgc
     1501 tgttgcgtct tctgggattg gttggaggtc accttctgtg ccgttctcat tttcgatgta
     1561 tgagtaggct tggatttcaa cttctccgtt ctcatcttct tctgcacttg caggaatcaa
     1621 gagaacatag ttcttaccaa actcttcttg accgtcaatc gtcaataaga tttcaaaaag
     1681 tgtttcgtta ccttggtcgt ctaccaaagt aatcaattca cgctcgtcgt gattgtggtc
     1741 gtgttcatgg tcatgatgat gtgccattcg tatctccttt aaaatgttct atctaaataa
     1801 ttttgtaaaa ttagctgggc agccaatttg tcaataactt tcttacgttt cccgcgacta
     1861 atgtctgctt gctcaatcaa catgcgttct gccgcaacgg tcgtcaaacg ttcatcctgg
     1921 taatcaaccg gtagtttgaa ttgctcaatc aataaatttc cataggcttg actagcctca
     1981 acacgaggtc cgctagtatt gttcatgttc ttaggtaaac cgacaacaaa tttatcaacc
     2041 ttatattgtt caacaagttc ggtcaaacgc tccagaccga attcgccctt ttcttcatcg
     2101 attgggatga tttccaaacc ttgagctgtg aatcctaagg ggtctgaaat agctacacca
     2161 actgtcttag aaccgacgtc taatcccatt attctcatta gaggtcaatc ccatttcctt
     2221 tcaaatagta gcgcaccaat tcttcaatga tttcatctcg ttcatgctta cgaatctgat
     2281 tgcgggcatc attatagcga ggaatataag cagggtcccc acttaataca tagccaatga
     2341 tttggttaat cggattatag cccttttcct ctagcgaacg ataaacacca gtcaatgtct
     2401 tgctgatttc ttgtttatct gtgtcatcca gacgaaaacg aactgtttct tccgtgaatc
     2461 ccatacttac accttctttc aatttttatt cattttcatt atatcatatt tctagaacaa
     2521 gcacaaagaa agtgcaaaaa gaactccata aatagagttc ttcctactct ttatagggct
     2581 gctcgcatac gagcttgggc attttcaaca tttcgaaccg ctcgcggtaa gaaggcgcga
     2641 atgtcatctt ccttgtatcc aacctgcaat cgtttctcgt caatcagaat tggacttttc
     2701 aaaatacgtg gattagaagc aatcaagtcg atcacttcat tgacacttaa atcttctata
     2761 tcaaaatcca aactcttagc atagcgattt tttgacgata caatacttgc aatgccattt
     2821 tccgtcttgg ttaaaatatt taaaatttct tccttggtga ttgcctcttt agccagatta
     2881 tgttcgttat aggacaattg atgggcattc agccagttct ttgctttctt acaagaagta
     2941 caactagata ctgtataaat tttaatcatg tagtcactcc tttgctacat cttagtaagc
     3001 acattatagt ctattatacc acatattcca tccgtctgta gacctatttt taaaaaaact
     3061 ttaaattttt gggggaaaat tcgggttttg gtaagaaaaa agtttggtct ccccaaactt
     3121 tttcgctctt attcttctaa ttcgatgccg ccatccaagt ccaaaacaac atcttggatt
     3181 tcttccgcaa caacaggagc ttcctctgtc acgacttctg gtgcttcctc accttcaatc
     3241 aagccataat gaacacgtat cttgcggtca atttcatcaa agattgctgg attacctgct
     3301 aagaatttct tagcattttc agaaccttgg ccaatttttt ctccattata tgaataccaa
     3361 gcacctgctt tttggatgat gccgaggttg ctaccaatct caatcaattc acctgtgcga
     3421 gaaattcctt caccgtacat gatttcaaca acaacctctt taaacggtgg agccaccttg
     3481 ttcttcacga ttttcacctt ggtttcctta ccaacgtttt gatctttctt atcgcctgtt
     3541 cctttgattt gtgtgtttcc acgaacatcc atacggacag atgcatagaa ttttagcgca
     3601 cgaccaccag gtgttgtttc agggttacca aacatgacac cgactttttc acgtaattgg
     3661 ttgatgaaaa tagctactgt cttagttttg ttgatggatg ctccgagttt acgcatggcc
     3721 tgactcatca tacgagcctg caaaccaaca tgactatcac caatatcgcc atcgatttct
     3781 gcacgtggta caagggctgc aaccgagtca acaacaacca agtcaaccgc accagagtcg
     3841 atcagcttac ctgcaatttc aagaccttgt tcccctgagt ctggctgtga caagagcaac
     3901 tcatcaatat tgacaccaag cgctgctgca taagctggat ctaaggcatg ttctgcatcg
     3961 ataaaggcag caataccgcc atctttttgg gcttgagcta ctgcatgaag ggcaacagtt
     4021 gtcttacctg agctctctgg accataaatc tcaatgatac gacctttcgg atagccaccc
     4081 gctccaagcg caatatcgat tgacaagcta cctgaactca tgacttgaac tttttgctca
     4141 gcacgctcac caagacgcat gacagcgccc ttaccaaaat ctttttcaat tgattttagg
     4201 gcatcatcca gtgctttttt acgctcatct ccaaatttct ttgttatatc ttctaatttt
     4261 tttcctggtt tcttagccaa tgattttctc ctcttttctt agtcaaacta ttatagcaaa
     4321 tatctgctat ttcacaaagt gtttcgtaca aaatccaaag cctgcagaca agcaagttgg
     4381 cgaaggtatt gccacgaata accacctaaa tcaatctctt tttgagaaat accagaggtg
     4441 ctagccaagg ctaggtatac ctttgcaagg acgttgtctc ttgttgattc tggcttgatc
     4501 accaccgaca cagaaagacc taaatcagct tgcagctcct gccgaatgca gtcagcttcc
     4561 tctgatagcc tgcccgattc tgtccctagc tgaccgatga cttttcctcc gctaaaataa
     4621 ggttgtccag ccaaagccaa actgacttct gcctgcaaga gacctcctgt cccctgctcg
     4681 acaatggcta tggtttgttt tttctccgcc aaacgagtcg ctaccgtttt gaccaaacta
     4741 ttgtcctcac cgtaagcata gaaatattct ctcagtttat cacgttgtaa gatgtcttct
     4801 tccaactgat tcagacgtaa atctgcttct tcttgactct ttgccttggt agataaacgt
     4861 aaggtcactt caccaatctt ggcatagggt gcgatcgttg ggtcagtttg gttgtcaatc
     4921 aagtccgcca aaactgtcac caactgactt tcaccaatgc caaaaaagcg taggacacgc
     4981 gagtaaagtt gttgacttga ctggtcaagc aagggctgca aactttctgt aaacatggcc
     5041 ttgagttcgc ttggtgggcc aggcaaaaca atataggtta caccatcttg ctcaatcata
     5101 ccaccaacag ctaaaccagc tggattctgt agcgcctgac ttccctccac aatctgtgcc
     5161 tggcgttcat tgttgggtgt acgaacacga cctgggcgac tggcaaagaa gcggtctaat
     5221 tttgccatag ctttttcatc aaagaccaat tttctaccta agaaggctgc caaggtctgc
     5281 ttggtcaagt catcctctgt tggtccaaga cctccacaga gaatgaccaa gtcgctccgc
     5341 tgactggcta cctccagtac agacaaaagc ctctgttcat tatctccaac agctgtgtgg
     5401 aaataaacat caattcccag ctctgcgcat ttctccgaaa gaaactgggc atttgtatta
     5461 atgatttgac ctgtcaaaat ctccgtccca acggcgatta gttctgcttt catattcctc
     5521 ctctgtctag ggtgcgattg ctcgctcatc taattagttc gcaatttctt tccaatctcg
     5581 caagtttctt catgttcatt caacagacct gctgcctgca aataggagta aatacagaca
     5641 ggccctacaa acttgaaacc tcgtttcttc aaatcttttg aaattcgctc agacaagtcg
     5701 ttcttggtcg gcaattctcg gaaggacttg acagggttgt cgatagatgt aaagttaacc
     5761 cattcccaaa gatacgtatc aaacgtaccg aattcctcct gtactcgaag aaaggcctga
     5821 gcattggcgc gggtagcgta cagctttgcc ttatgacgaa tgatgtctgg attggtcaga
     5881 aggctatcta actcgctatc tgtcatagcc gcaacctttt gaatatcata gttgaaaaaa
     5941 gcagagcgaa aagcctgacg tttattgaga acaatttccc aggaaagtcc tgcttggtag
     6001 gattccaagc aaagcaactc aaacaaagac tgctcatcgt gaagcggatt gccccattct
     6061 tcatcatggt aagcaatata aagtggatta ttgggattaa cccaagcaca acgggacatc
     6121 atttctcctt ttcacatacg gtttactcaa cacatttgac aggttagttc gagacagctg
     6181 gatactttgc gtaacataat cccaagtcct aaatatcacc gaataacgca gttgacatct
     6241 ggcaaaaggc ttcgtcaaaa ctcgcctttt acctagttgt cattgcggag gtctcacaac
     6301 gaaatttcta gcaaaatttc tgttcggccg tctattttct ctttgtcctt cacgtccttt
     6361 gtatctggac acgacatgag ccacaaaaat cgatattatt tttgtgacga attagtaagg
     6421 tacctaggca agtcgcaaat agcgattgcc gtagtgggag cgggaaagaa ttcgacaggc
     6481 cgaaaaagaa ttcgtcttcc cgcccccgca cagttgatta ggccagattt gatgtgtgaa
     6541 acacgaacaa atctgccaat caaccactgc gctgaaatgt tgactcaaac tttgagtaac
     6601 aaaacaaaac tttttaacca tcatactggt acgttaattg aacacggcta cgatactttg
     6661 ccaaaagata aagacttcct agatgctaag gcatctgcgt cagcttttct attttgctgt
     6721 gtatcgctta acaccttggt atcctgttac ttcatcagca ttttaagggc tgatttgata
     6781 tagttctcag cggtatcaga ggtgccgtcg aagaatttct tgattttctt gagttcggct
     6841 ggtcggtagc caagagcttc catggcttcc atagcttcat caagagcgat attttcactg
     6901 gatggtgcta cttgttgaac aggacctgct tcttcgctca taacaaactt gccttccaag
     6961 tccaaaatca tctgctgggc tgttttcttg ccaatctttg gaaacttggt caggtaggta
     7021 atgtttttct gctcgatagc acgaacaagt ccatcattat catcaacagc aataatagcc
     7081 agagctgttg ttggaccaat acctgatact gaaatcagac tcagaaagac ggatttttca
     7141 ttttctgtag caaatccgta gagcaaatga gcatcttcac gaatcacctg atgagtatag
     7201 acagtcactt cttgctggac ttgtccagag taagcgtaag ggttggctac ctgcaagaga
     7261 taaccaactc cgtgcgtttc tactacaatg tattttgcag ttattttcgt taaaattcct
     7321 ttgatatagt cgtacatata cttcctttac taatgtgtca acttttgcaa ctatgttaat
     7381 acttccctaa ttcccgcaaa ctcgtgtgat tttcttgaat gcgacggaac attttttcca
     7441 tatccgattt gctaaaatgt actaagactg ggcgaccgtg cgggcagtta tagggatttt
     7501 ggcagtaaga caattgtctc aataaatcac gcgccgaata atcatccaaa gcatggttgg
     7561 ccttgattga ccgtttacaa gacatcatga tggccagttc tgcccgatac tgcttgattg
     7621 acacctgatc cgtcagaagc aacatgtcgc acatctcata aatgccagac tcaatctctt
     7681 cttccttcat ccaaatagga tgttcacgca gaataaattg attagctcca tattcttcca
     7741 agttgacacc aacttgacga agggcatcca ttttgtggac aaggtcaagg gcatcattct
     7801 gcggaaattc aaaaatatag ggcaccaata actgttgagc tgaattgtca acctgcccaa
     7861 ttttctcacg gtagtattcg tatttgaccc tctcttgcgc ggcatgctgg tcaatgatat
     7921 aaagtcctgt cttgccttgt gcaaataaat acgtcccgtg catctgacca aaatattcta
     7981 actctggaaa tgtcgatgtt tcctctcggt ctaatttatc tgccagtttt gccaattctt
     8041 ttgcgctcag attaggatgc tcctgatctt ctgattccac cgattgacgt tctgcaaatt
     8101 gaacagatgt aggtttattt tcggcaggcg actcaacaat ctcttgccta tcctcttcga
     8161 gaggtttgac atcctcagcg accacgtctg gttttaagaa gaagtcttgc ttaatcgtat
     8221 cataatagat ttttggctct ctgagtggta aggtgccttg ctctgctttt acttttggtc
     8281 gagtacttga ctgagctaaa ttctcaagag catctggtat caagtcctgc tctttaagtg
     8341 cttgactaat cgcctctcga atcaaggtca tgagttcttt ttccttagag atgcgaactt
     8401 cctgcttggt cggatgcaca ttgacatcag caagataggg gtcaatttct atagaaatca
     8461 ctgccaatgg aaaacgtcct accatcaact tactgccata accttccaaa atcgctcgat
     8521 tcagcaaaaa attcttgata tagcgaccgt tgatgaaaat ggaaatgtag ttgcggttgg
     8581 cacgagtcaa ctctggcaag gaaacgtaac ctgaaatctg aaaatccaga tcttctgcct
     8641 caatttcaac catttttttg gcagaagcaa tcccataaat ccctgaaatt gcctgacgaa
     8701 gtttccctgt ccctgcagtt ctaattaatt ctcgtccttc gtttactaag gcaaaagcta
     8761 tttccggatg agctagactc aatcgattta caacatcaac gatatgcgat aactcagcct
     8821 gctgactgcg gacatacttg agacgggcag gggtattgta aaacaaatcc gaaacagtaa
     8881 tctgcgtacc aactggacga ctaactggct cctctttctc gatgacacca cctttggcct
     8941 ccaaatgaag tccgtgtgca gagtctgccg tagctgtctc aatgttcata tgactgacag
     9001 aagcaatgga gggcagagct tctccacgaa aaccgagggt gcgaatacga aacaaatccg
     9061 attgattttt tatcttactg gtggcgtgac ggcggagggc aagcgctact tcatcagggg
     9121 caatcccctc accgttatcc gtaatttgaa tcattttaag gccagcctct tcaacactaa
     9181 tttcaatctg actagcccct gcgtcaatgg aattttccac caactcctta accacactgg
     9241 ctggtcgctc aatgacctca ccagccgcaa tctggttggc tagtatttct ggtagttcaa
     9301 taatatgtga catcatttct cctacatttc tttaataatt tttcccgaat gcttatcttt
     9361 ccattatacc acatatccac tttccctcct tttcccagat aggctaaaga aaaaatgact
     9421 gcctgagcaa tccaatgtca ttaagttaac taacctatca cattttgtgg tgggttagtt
     9481 tttatg
//
LOCUS       DASGAC010000076         9469 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.076, whole genome shotgun sequence.
ACCESSION   DASGAC010000076 DASGAC010000000
VERSION     DASGAC010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9469
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.076"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            41..151
                     /locus_tag="U1335_001339"
     CDS             41..151
                     /locus_tag="U1335_001339"
                     /inference="COORDINATES: protein motif:HMM:TIGR03949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class IIb bacteriocin, lactobin A/cerein 7B
                     family"
                     /protein_id="HEM5231806.1"
                     /translation="MKELNKEELQSISGGSVPIILLPNGKLVKWILGLFK"
     gene            226..876
                     /locus_tag="U1335_001340"
     CDS             226..876
                     /locus_tag="U1335_001340"
                     /inference="COORDINATES: protein motif:HMM:NF014566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5231807.1"
                     /translation="MVKWIKSILQVLGLNFVIQAPVIAEMSWGKMDDTVVGYLIHVLC
                     WFVLTALIFWLLGTLRKKYRDDSLQVREYSYVKLFGLVLLGIVAQLVVSNIFLRLSGS
                     TIDNSSMLDLFQSKYGWMALLSVNIWGPIREEYLYRGVFQERIRNKAYPKISVFVTTV
                     IFTFVHTYDISVSFWMLFFPGLVFSWVYYKTNHLKYPIVAHILLNSIVTILNLISV"
     gene            942..1616
                     /locus_tag="U1335_001341"
     CDS             942..1616
                     /locus_tag="U1335_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5231808.1"
                     /translation="MKIIKSIGLAVGTLLLTLLIQFPAYVGITAFQESVLLKLAVMIG
                     LGLAILALLSVIRRGMVKNQEFSREKLNIFKIVGMTALVFTGQTFLNLLWQYLGLSLS
                     DSNALDIVNQLNSDNFWVIALSVVLFAPVLEEFLYRGILLEKTAQYFPKHPQMVIVFS
                     ALLFAYCHTWSFSAAFLGHFITGAYLGCLYMCNRRMTDTILAHSFYNASILFLQILFG
                     LVQIGG"
     gene            1713..1988
                     /locus_tag="U1335_001342"
     CDS             1713..1988
                     /locus_tag="U1335_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231809.1"
                     /translation="MRKFFQDLNQEYLETRSSTREDWLEWIIQRKMTWGMRWGLVGIL
                     MFVLQPLTYNPHFLLGCFYIGFLLGLVYVCGQLFFAARSIFRNVRKK"
     gene            complement(2002..2661)
                     /locus_tag="U1335_001343"
     CDS             complement(2002..2661)
                     /locus_tag="U1335_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent transcriptional regulator"
                     /protein_id="HEM5231810.1"
                     /translation="MTPNKEDYLKCIYELGQLDQKITNKLIAEKMAFSAPAVSEMLKK
                     MVAEELISKDTKAGYLLSQTALEMVASLYRKHRLIEVFLVEQLGYSPEEVHEEAEILE
                     HTVSDHFINRLDLLLEQPQTCPHGGSIPQAGQPLIERYQTRLSQLTETGNYQLVRIHD
                     FYQLLQYLEQHELAVGDLLTVTDFDHFAQTITIQYKDKELAVPTAIAQQLFIEKSNRP
                     A"
     gene            2787..3710
                     /locus_tag="U1335_001344"
     CDS             2787..3710
                     /locus_tag="U1335_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEM5231811.1"
                     /translation="MKKILFSFALLLSLIGLGACRPSQTTEGSSKPRVAVTTSFLNDM
                     VYQLAGDEVERDLLIPAGEDPHLYVAKSSDLSKLQKADLVLYHGLHFEGKMVEALEKT
                     GVAVSKNFNAKDLNTMDEDGEEIVDPHFWFSIPLYKSAVAVASEELQKLLPAKAEMIQ
                     KNAEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFTLYAPQGVSTD
                     SEVANSDMIETVNLIIDHNIKAIFTESTTNPERMKKLQEAVKAKGGQVEVVTGEGKEL
                     FSDSLAPEGEEGDTFIDMYKHNVKLMVKYLK"
     gene            4264..5034
                     /locus_tag="U1335_001345"
     CDS             4264..5034
                     /locus_tag="U1335_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEM5231812.1"
                     /translation="MSAIIELKDVNLAYSASQAMALEDVNLVIPRGSRTAIVGPNGAG
                     KSSLFKVILGLEKPDTGQVRLLGQEAGLERLIAQKVAYIPQSSQVNWQFPATVFEIVL
                     MGRFAHSKGMFRRPTKADRQIVEQALERLKIADLRHRQIDQLSGGQRQRVFLARALAQ
                     EAELYLMDEPLAGIDQATEIMIMDMLKEFQCEGKTSIVIHHDLTTLDAYFDHLVWLHK
                     HVIDSGPMDETLTSENYQATYSIGNGLFLGNAKGGSHV"
     gene            5027..5887
                     /locus_tag="U1335_001346"
     CDS             5027..5887
                     /locus_tag="U1335_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEM5231813.1"
                     /translation="MFEVFKEYSFWTVALGTVSLAVAASTIGSISVLTKQSLLGDALG
                     HASYPGVIVSFMIFQSRHPLYLLLGAVLSGYLSYALVHWLRRKGGHSLVNALSLVSAS
                     FFGLGMVLKNAIQGNEAFAGASQAGLQTYLFGQAAFIQLDDVILIGIISLLALVLFAF
                     FYQDYKLYLFDQTFARVIGVRVRYLQQLTMFLMICLIAVGLKLVGAILMSSFLIAPAV
                     FGLMLGKSYHKSLLLAGIVAIGSAFVGTWISSSVSGLSTGPTIIVCLTGLTLSAFVYV
                     TYVRKENGRV"
     gene            5880..6719
                     /locus_tag="U1335_001347"
     CDS             5880..6719
                     /locus_tag="U1335_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEM5231814.1"
                     /translation="MFEVLLILMVIASSCGLLGSILVVKNQSMLADALSHSVLLGIVL
                     GFFISHSLDSPLLIVGASLFGLLSVLAIDRLHSRKIAHDAATGLVFSFFFAVAVLLIS
                     LFARNVHLDVDLVLQGEVLFAPLHRMDVLAWSLPVSLVKSSLAWLVIVLFFVWAYHRL
                     QVYLFDSNHARLSGLRTRILEMVILILVSLTTVLAFEAIGSMTVIVFLVAPSMAALRW
                     VKSFRQLLLLGQGIAILTVVLGFLVANQLDLTMSGTCTVVSLLVVCSSIILKNTWSWS
                     PDK"
     gene            6775..8667
                     /locus_tag="U1335_001348"
     CDS             6775..8667
                     /locus_tag="U1335_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010922744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase"
                     /protein_id="HEM5231815.1"
                     /translation="MTRLQDDFYEYVNGEWAKTAVIPDDKPRTGGFTDLADEIEKLMI
                     DTTNAWLAGEDVPEDSVLQNFVAFHKQVADYETRDRLGAEPAQALIAEYKALNSFEEF
                     TSKLAEYELAGKPNLMPFGVAPDFMDATTNVLWADSLGIILPDTTYYEEGHEKGAELL
                     KTWRESQESLLPKFGFSDEEIKDLLDKRLELDATIAKYVLSNEEGSEYAKLYHPYEWA
                     DFTALAPELPLDDFFTAILGQTPDKIIVPEERFWQAAKDIYSADNWELLKATLILKAA
                     GAYTAFLSDEIRILAGAYSRALSGTPQAQNQEKAAYNLAQGYFNQALGLWYAGEKFSP
                     EAKADVEAKVAKMIEVYKSRLEMADWLAQETRDKAIVKLNVIKPYIGYPEALPERYYK
                     KIVDPSKSLVENAIELNKIDIAHGWSKWNKPVDIKEWGMPAHMVNAYYNPQKNLIVFP
                     AAILQAPFYSLEQSSSANYGGIGAVIAHEISHAFDSNGASFDEHGSLNNWWTEEDYAA
                     FEARTQQVIDQFEGQDSYGAKINGKLTVSENIADLGGIAAALEAAKSEDDFSAEEFFT
                     NFARIWRMKARPEFMQMLASVDVHAPGHLRTNIQLPNFDEFHETFGVQEGDGMWRAKE
                     DRVIIW"
     gene            8715..>9469
                     /locus_tag="U1335_001349"
     CDS             8715..>9469
                     /locus_tag="U1335_001349"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231816.1"
                     /translation="MLVEKLIAWYRKANLDEYNPWIKDGKGAKKIDEFIRARNNEDLD
                     FSWFNHGRAATKYSLPQPVQGDYLNENFYCCLYNPGVAENVWASEASSVIKFIDEFTT
                     ETPTPYIQRMFDFDDEIHFNDVYDKIINRENVLHQEMQIIKRRLEEIADESPSKDWDT
                     IVDENMANIVIGEKNPTSPKCEDSCYYIKTYYKGLLARKDSSNYLEDTIETLKGIVKK
                     QAIDRFDTFKNLPICNLDLVPFASKNKSNININ"
BASE COUNT         2643 a         1660 c         2249 g         2917 t
ORIGIN      
        1 aaatcatatt acaaatatag ttagaaagga gttaataagc atgaaagaat tgaataaaga
       61 agaacttcaa agtatttcag gtggaagcgt cccgattatt ttattgccta acggaaagtt
      121 agtaaaatgg attttaggat tattcaagta agataagaaa taatctgagt caataaatgc
      181 taccggtaaa tttgagatga atagtagtag caagggagat gtgaaatggt caaatggata
      241 aaaagtattc tacaggtttt ggggttaaac tttgtcatac aagcccctgt aatagctgaa
      301 atgtcttggg gaaagatgga tgacacagta gtaggttatc tcatacatgt actatgttgg
      361 tttgttctaa cggctctcat tttttggtta ttagggacat tacggaaaaa gtatcgtgat
      421 gatagtctcc aagtccgaga atatagttat gtaaaactat ttggattggt tttactagga
      481 attgtggcac aacttgtagt atcgaatatt tttttacgat tgtctggttc gaccatcgat
      541 aatagttcca tgttagatct atttcagtcc aaatatggtt ggatggcctt gcttagtgta
      601 aatatttggg ggcctattcg tgaagaatat ctatatagag gtgtctttca agaaagaatt
      661 aggaataagg cttatccaaa gatcagtgtc tttgtcacaa cggtaatttt tacttttgta
      721 catacttatg atatttctgt aagtttttgg atgctatttt tcccgggtct tgttttttct
      781 tgggtttact ataaaaccaa tcatctcaaa tatccgatag tggcacatat cttgttgaac
      841 agcattgtga ctattttaaa tcttataagt gtgtaaaggt gtgaacatcg tgagtaacaa
      901 ttacaatagg ctataaaaaa acaatggaaa ggagagagaa tatgaaaata ataaaatcaa
      961 tcggtttagc agtaggtacc ttgcttctca ctttgctcat tcaatttccg gcttatgtag
     1021 ggataacagc ctttcaagag agtgtgcttt taaaacttgc agtcatgata gggcttggtc
     1081 ttgcaatatt ggcactactt tctgtcatca gacgaggaat ggtgaagaat caagaatttt
     1141 caagagagaa gctgaatatt tttaaaatag tcggtatgac agcgttggta tttactggac
     1201 aaacttttct aaacctcctt tggcagtatt tgggtcttag ccttagtgat tctaacgcct
     1261 tggatatagt caatcagtta aattcggata atttttgggt gatagctctc tcagttgtct
     1321 tgtttgctcc agttttagaa gaatttcttt acagagggat tttgttagaa aagacagccc
     1381 agtattttcc taagcatcct caaatggtca tcgtattttc tgcccttcta tttgcttatt
     1441 gtcatacttg gagcttttca gcggcatttt taggacactt tatcacaggg gcttatctgg
     1501 gctgtctgta tatgtgcaat agacgaatga cggatactat acttgcacat agcttctata
     1561 acgcctccat tttattcctc caaatattat ttggtttggt gcagattggt ggataaaaat
     1621 tgacagtaga catttttggg aaatgcctgt atactgagga taagtggcaa ttttataatt
     1681 gctaactatc aagtgcagag gtgggcagaa atatgagaaa attttttcaa gacctcaatc
     1741 aagaatatct ggaaacaaga agttcaacta gagaagattg gctggagtgg attatccaga
     1801 gaaagatgac ctggggtatg cggtggggct tggtagggat tcttatgttt gtcttgcagc
     1861 ctttaaccta taaccctcac tttctattgg gctgttttta tataggtttc ctacttgggt
     1921 tagtgtatgt atgtgggcaa ctattttttg cagccagatc tattttccgt aatgtgagaa
     1981 aaaaataatc gctcagctta tttaggctgg gcgattgctt ttttcgatga ataattgttg
     2041 ggcgatggct gttgggacgg cgagctcttt gtccttgtac tggatggtga tggtttgggc
     2101 aaagtggtcg aagtctgtga cggttagtaa atcgccgaca gctaattcat gttgttccaa
     2161 gtactgaagg agttgataga agtcatggat acggacaagc tggtagttcc ctgtctcagt
     2221 tagctgtgat agccgtgtct ggtagcgttc gatgagcggt tgtcctgctt gaggaatgct
     2281 tcccccgtga ggacaagttt gaggctgttc cagtagcagg tctaggcgat tgataaagtg
     2341 atctgaaacg gtgtgttcta aaatctcagc ctcttcatgt acttcttctg gagagtagcc
     2401 aagttgctca actaagaata cctcaatcaa gcggtgtttg cgatagaggc tggctaccat
     2461 ttcaagggca gtttggctga ggagataacc tgccttggta tccttagaaa tgagctcttc
     2521 ggctaccatt tttttgagca tttcggaaac ggctggtgcg gagaaggcca tcttctctgc
     2581 gatgagttta ttggtaattt tttggtctaa ttgacccagt tcataaatac attttaggta
     2641 atcttctttg tttggtgtca tgagaactcg ctttctactg aaactattat atcaaaaaat
     2701 ttaaaaatca gttgacaaaa tgaatttttt agcttaatct aattatatag ttaggtatgc
     2761 ttaataaaaa taaaaggaga acctatatga agaaaatatt gttcagtttt gctctgctat
     2821 tgtccctaat agggttagga gcttgtcgtc catcgcaaac cacagaaggc tctagcaagc
     2881 caagagtggc tgtgactact tccttcctca atgacatggt ctatcagttg gcgggtgatg
     2941 aggtggaacg tgatttgctg attccagcag gagaagaccc tcatttgtac gtagccaaat
     3001 ctagtgattt atcaaaatta caaaaggctg accttgttct ctaccacggt ttgcactttg
     3061 aaggtaaaat ggttgaagct ttggagaaga ccggagtagc tgtttctaaa aactttaatg
     3121 caaaagattt gaatacgatg gatgaggatg gagaagagat tgtcgatccg cacttctggt
     3181 tttcaattcc cttgtacaag tcagctgtag ctgtagcttc agaggaacta caaaaactct
     3241 tacctgctaa agctgagatg attcagaaaa atgcagaaaa ataccaagcg cagctagatg
     3301 atttgcatgc ctgggtagaa aaagaattaa gtgtgattcc aaaagaaagt cgctatttgg
     3361 taacaccaca tgatgccttt aattactttg ctgctagtta tgacttcact ctctatgctc
     3421 ctcaaggcgt gagcaccgac tcagaagtgg ctaacagtga catgattgag acagttaacc
     3481 taatcataga ccataatatc aaggctatct ttacagagtc tacaaccaat ccagaacgca
     3541 tgaagaaatt gcaagaggca gtaaaagcca aaggtggtca ggttgaagtt gttactggcg
     3601 aaggtaagga gttgttctca gattccttgg caccagaagg cgaggaaggg gataccttta
     3661 tcgacatgta caaacataat gttaaactga tggttaaata tctgaaatag tagaggtcga
     3721 acgggcttgc tattcaatga agactagaga tattaccgaa gatagagttg ataggtacca
     3781 atatgaggga taatcaattg tttcgagcac aagcagtata ggactctttc tataggaggt
     3841 gacaacgctt gggggaggat aggcgttagt agcaaatcac accagttatt gaggtccttg
     3901 actagaaata ctgtttgtag acctcgatgc tgttggttca cagcgggact ttatatatca
     3961 gtagtctgtg cgtgaatagg gatttcaaat gagtagtaaa aaggactcgg tctaggtcga
     4021 gttctttccg tttttggacc atttttaaca gatttataaa catacgattg aaggaagcat
     4081 tggtgctcta cgaaaatcaa attcatgtac tgatgtgttg aaataagcga tgtatagggt
     4141 ttgccagcaa tttgttggta cggtatctta atcttatcga ctttctcagc ttggtaggtt
     4201 ggtctgattt tgattttcat tgagtatgaa tgaggtatat catttttaaa aataggagga
     4261 aatatgtcag caatcattga attaaaagat gtcaatttag catattcagc cagccaggcc
     4321 atggctttag aagatgtcaa tttggtgatt cccagaggga gtcggacggc tattgttgga
     4381 ccaaatggtg ctgggaagtc cagtctattc aaggtcattt tggggttgga aaaacctgac
     4441 acagggcagg ttcgcttgct tggtcaggag gcaggtctag agaggttgat tgctcaaaag
     4501 gtagcctata ttccccagtc cagtcaagta aattggcaat ttcctgcaac agtttttgaa
     4561 attgttctga tgggacgctt cgctcatagt aagggaatgt ttagaagacc gactaaggct
     4621 gatagacaga ttgttgagca ggctctagaa cggttaaaaa ttgcggattt acgccatcgt
     4681 cagattgatc agctttcagg tgggcagcgt cagcgggtct ttctagccag agccctggca
     4741 caggaagcag aattgtatct tatggatgag cctctagcag ggattgatca ggcaacagaa
     4801 atcatgatta tggatatgct caaggagttc caatgtgaag ggaaaacttc cattgtcatt
     4861 catcatgact taacgacgct ggatgcctac tttgatcacc ttgtctggct tcataagcat
     4921 gtgattgact ctggtccgat ggatgagact ttgacaagcg agaattatca ggcgacctac
     4981 agcataggaa atgggctgtt tttaggaaat gccaaaggag gcagtcatgt ttgaggtttt
     5041 caaagagtat tctttctgga cagttgcttt agggaccgtc agcctagctg tagcagccag
     5101 tactatcgga agtatatctg ttcttactaa acagagtttg cttggggatg ctctggggca
     5161 tgcttcttat cctggagtga ttgtctcttt catgattttt cagtcgcgac atcctctcta
     5221 cttgctgtta ggagcagtgt tgtcaggcta cctttcttat gcacttgtcc attggctgcg
     5281 tcgaaaaggt ggtcacagcc tagtcaatgc cctttcattg gtgtctgcgt ctttctttgg
     5341 tttgggaatg gtcttgaaaa atgctattca gggaaatgaa gcctttgcag gggcttccca
     5401 ggctggattg caaacctatc tatttggaca ggcagccttt attcagctgg atgatgtgat
     5461 actcatcgga attatttcac tattggcttt ggtattgttt gctttctttt atcaagacta
     5521 taagctatac ctgtttgatc aaacttttgc aagggttatt ggtgttcgtg taaggtactt
     5581 gcagcagttg acgatgtttt tgatgatttg cctaattgca gtaggattaa agttagtcgg
     5641 agctattttg atgagtagtt ttttgattgc accagctgtc tttggcttga tgctgggaaa
     5701 atcgtatcat aagagtctgt tactggcagg aatcgttgca attgggtcgg ctttcgtagg
     5761 gacctggatt agctccagtg tatctggttt gtcgactgga ccgactatta tcgtctgtct
     5821 gacaggtctg accctgtctg catttgtgta tgttacctat gtcagaaagg agaatggtcg
     5881 tgtttgaagt attactcatt ttgatggtta ttgctagttc ttgtggcttg ctcggctcga
     5941 tactggttgt aaaaaatcaa tcgatgttgg cagatgcgct atcgcattct gtcttgcttg
     6001 ggattgttct gggatttttt attagtcata gtttggattc accattgcta atagttggtg
     6061 ccagtctgtt tgggttatta tcggttcttg ccattgaccg tctgcatagt cgaaagatag
     6121 cgcatgatgc cgcaacaggt ctagtttttt ctttcttttt tgcggtggcg gttttgctta
     6181 tttctctttt tgctcgcaat gttcatttgg atgtggatct ggttttgcag ggggaagtac
     6241 tttttgctcc gctccatcgt atggatgttc tagcctggtc actccctgtt agtctggtca
     6301 agtcgagttt ggcttggttg gttattgttc tattttttgt ttgggcttac catcgtttac
     6361 aagtgtatct atttgacagc aaccatgctc gtttatctgg cttacgaaca aggattttag
     6421 aaatggttat tttgattcta gtttccctaa ctactgttct ggcctttgaa gcgattggtt
     6481 cgatgactgt tattgttttc ttggtggcac caagtatggc tgccctacgt tgggtcaaat
     6541 cctttaggca attgcttctt ttagggcaag gtatcgctat tttaacggtt gtgctaggtt
     6601 ttttagtggc caatcagctg gatttaacca tgtcagggac ctgtaccgtt gtcagccttc
     6661 ttgtggtttg ttcgagtatt attctaaaaa atacttggtc atggtcacct gataagtgaa
     6721 attgtcagaa ttttttgtta ttatagtcat taagaaagac aaaggagaaa atcaatgaca
     6781 cgtttacaag atgattttta cgaatacgtc aatggtgaat gggcaaaaac agccgtgatt
     6841 ccagacgata agccaagaac aggtggtttc acggacttgg cggatgagat tgaaaagctc
     6901 atgattgaca cgacaaacgc ttggttggcg ggagaagatg tcccagaaga tagcgttttg
     6961 caaaactttg tagcctttca caaacaagta gccgactatg aaacccgtga ccgtttggga
     7021 gcagaaccag cacaagcctt gattgcagag tacaaggcac tcaactcttt cgaagaattt
     7081 accagcaagc tggcagaata tgagttggca ggaaagccaa acctgatgcc tttcggcgtg
     7141 gcacctgact ttatggatgc gaccaccaat gttctttggg cagattctct aggcattatc
     7201 ctcccagata cgacctacta tgaggaaggg catgaaaagg gtgcagaatt gctcaagact
     7261 tggcgtgaga gtcaggaatc cctcctgcct aagttcggtt tcagtgatga ggaaatcaag
     7321 gacctcttgg acaagcgttt ggaactagat gccacgattg ccaagtatgt tctgtcaaat
     7381 gaagaaggtt ctgagtacgc caaactttac cacccgtacg aatgggcaga ttttacagcc
     7441 ttggcaccag agttgccttt ggatgatttc ttcacagcga ttttaggtca aacgccagat
     7501 aagattatcg tgcctgagga acgcttctgg caggctgcca aggacattta cagtgcggat
     7561 aattgggagc ttttgaaggc gaccttgatt ttgaaagcgg caggagctta tacagccttc
     7621 ctgtcggatg aaattcgcat tctagcagga gcctacagcc gtgctctttc tggtacgcca
     7681 caggctcaaa accaagaaaa agcagcctac aacttggcac aaggctactt taaccaagcc
     7741 ctcggtcttt ggtatgctgg ggagaaattc tcaccagaag ccaaggccga tgtggaagcc
     7801 aaagttgcca agatgattga ggtctacaaa tctcgcttgg aaatggcaga ctggttggct
     7861 caggaaacgc gtgacaaggc cattgtcaaa ctcaatgtta tcaagcctta cattggctat
     7921 ccagaagcct tgccagagcg ttattataag aagattgttg acccaagcaa gtccttggtg
     7981 gaaaatgcca tcgaactaaa caagattgac attgctcatg gttggagcaa gtggaacaag
     8041 cctgtggaca ttaaggaatg gggcatgcca gctcacatgg tcaacgccta ctacaatcca
     8101 cagaagaact tgattgtctt tccagcagcc attttgcagg cgcccttcta ctcactggag
     8161 caatcgtcat ctgctaacta cggtggtatc ggtgcggtta ttgcccacga gatttcccat
     8221 gcctttgact caaacggtgc gtcctttgat gagcatggta gcttgaataa ctggtggaca
     8281 gaggaagatt atgctgcctt tgaggcccgt acccagcagg ttattgacca gtttgaaggt
     8341 caggattcct acggtgccaa aatcaatggt aaattgactg tgtcagaaaa cattgccgac
     8401 cttggtggaa ttgcggcagc cctagaagca gccaagtcag aagatgactt ctccgcagag
     8461 gaattcttca ctaactttgc tcgcatctgg cgaatgaagg ctcgtcctga gttcatgcag
     8521 atgttggcta gtgtcgatgt ccatgcacca ggtcacttac gcaccaacat ccagttgcca
     8581 aacttcgatg aattccatga aacctttggc gttcaagaag gcgatggcat gtggcgtgcc
     8641 aaagaagacc gcgtgattat ttggtaataa ttgaaaatct ccaatcttga agctacaaaa
     8701 agaaaagaga gagtatgctt gtagaaaaac tgatagcatg gtatcgaaag gctaatttgg
     8761 atgagtacaa tccttggatt aaggacggta aaggggctaa aaaaatagat gaatttatca
     8821 gagcacgtaa taatgaggat ttggattttt cttggttcaa tcatggtaga gctgctacaa
     8881 agtatagttt gccacagccg gtgcaaggag attatttaaa tgaaaacttt tactgctgtt
     8941 tatataatcc aggggtcgct gaaaatgttt gggcaagtga agcaagttcg gttatcaaat
     9001 ttatagatga atttacaacg gagaccccta ctccctatat tcaaaggatg tttgattttg
     9061 atgatgagat ccactttaat gatgtttatg acaaaataat caacagagaa aatgtacttc
     9121 atcaggagat gcaaatcata aaaagacgtt tggaagagat agcagatgaa agtccgtcta
     9181 aggattggga tactattgtt gatgaaaata tggcaaatat tgtcattgga gaaaaaaatc
     9241 caacaagtcc taagtgtgag gatagttgtt actatataaa aacgtattat aaaggattgt
     9301 tagcgaggaa agattcatct aattacttag aggatacgat tgaaacttta aagggtattg
     9361 tcaaaaaaca agcgatagat aggtttgaca cctttaaaaa ccttcccatt tgtaatctag
     9421 atctggttcc gtttgcttct aaaaataaaa gtaatataaa catcaataa
//
LOCUS       DASGAC010000077         9409 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.077, whole genome shotgun sequence.
ACCESSION   DASGAC010000077 DASGAC010000000
VERSION     DASGAC010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9409
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.077"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..574
                     /locus_tag="U1335_001350"
     CDS             <1..574
                     /locus_tag="U1335_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003051793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5231817.1"
                     /translation="LSTYRTALLAEFMSLNGCRIGEAVSLELENRDFETKILQLHGTY
                     DHTEGYRNGEKTTQKTNASYRETIMTKREMEIIEELEFMNELEKNTNPRYRDMGYIFT
                     TKNGVPIQTNSFNLALKNANQRLEKPIQKNLTSHIFRHTLVSRLAENNVPLKAIMDRV
                     GHADAKTTIQIYTHVTKKMKSNVADIKENY"
     gene            complement(820..1095)
                     /locus_tag="U1335_001351"
     CDS             complement(820..1095)
                     /locus_tag="U1335_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002950996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEM5231818.1"
                     /translation="MANKQDLIAKVAEATSLTKKDSAAAVEAVFGAVADYLAAGEKVQ
                     LIGFGNFEVRERSARTGRNPQTGAEIEIAASKVPAFKAGKALKDAVK"
     gene            complement(1185..1781)
                     /locus_tag="U1335_001352"
     CDS             complement(1185..1781)
                     /locus_tag="U1335_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpmS family protein"
                     /protein_id="HEM5231819.1"
                     /translation="MRPRKAGNLNIWKWLFLAQLALLIGCGIVLYTRIQTDREDLTKL
                     VQTSGEDTKVGTFSTNREQLNQTITNYLKEYQTEEFSYQLFVTSQQVVFEGSYQVFGV
                     TIPLYIYFQPSKMEDGSILLRITEISVGSLSLPKAEVLAYLQKNYKLPAFVKIDSEQA
                     QVQVQLTELKNKFGLYGKANTIDLYNDQFIVDIYRKRQ"
     gene            complement(1753..2586)
                     /locus_tag="U1335_001353"
     CDS             complement(1753..2586)
                     /locus_tag="U1335_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEM5231820.1"
                     /translation="MNNRKLIQGFVFFFLAILGSIFLFHLLIPVASSRISRQELTVSE
                     KISFRYVALGDSLTEGVGDTTGQGGFVPLLAQSLTNDYGYEVDYKNFGVSGNTSNQIL
                     KRMKEDGELISYLKTADLLTLTVGGNDLRKAIIKNIANLKVSTFDKPAKDYGKRLDTI
                     IMTARKNNPNLPIYVVGIYNPLYLNFPELTEMQTIVDNWNAMTEQITEKYQHVYFVPI
                     NDLLYKGLEGEAGISQNGSQVTNNLLYEEDSFHPNNTGYEIMKKAILERMNETTESWE
                     P"
     gene            complement(2579..3412)
                     /locus_tag="U1335_001354"
     CDS             complement(2579..3412)
                     /locus_tag="U1335_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM5231821.1"
                     /translation="MSKIKIVTDSSTTIEPSLVEELNITVVPLSVMVDGVVYSDNDLK
                     EGEFLELMRGSKNLPKTSQPPVGLFAETFADLAKDGSQIIAILLSHALSGTVEAARQG
                     ATLSGADVTILDSSFTDQAEKFQVVEAARMAQAGASKEEILAAIETVKEKTELYIGVS
                     TLENLVKGGRIGRVQGMLSSLLNIRVIMEMKDHQLTPIVKGRGNKTFKKWLEEFTATL
                     VDKKVAEIGISYSGTADFANEMKSQLQEYVSKGISVLETGSIIQTHTGEDAWAILIRY
                     E"
     gene            complement(3506..5167)
                     /gene="recN"
                     /locus_tag="U1335_001355"
     CDS             complement(3506..5167)
                     /gene="recN"
                     /locus_tag="U1335_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HEM5231822.1"
                     /translation="MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNL
                     MLGARATTDVIRHGAAKAEIEGLFSFENSRALEQILLEQGIEVADELIIRREILQNGR
                     SVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
                     YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDK
                     LLNHKQIADTLTNAYALLDNEDFSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYY
                     VVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTVDDVLDYFSKISEEY
                     NLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELALVLEDIIRQELQDLYMEKA
                     RFQVRFTKGKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKE
                     GKTSIVFDEVDTGVSGRVAQAIAQKIYKIGQYGQVLAISHLPQVIAIADYQFFIEKIS
                     DEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG"
     gene            complement(5170..5595)
                     /locus_tag="U1335_001356"
     CDS             complement(5170..5595)
                     /locus_tag="U1335_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HEM5231823.1"
                     /translation="MNKRERLEVIKDLVVRFPIDTQEEIVERLEAMGVNATQATVSRD
                     IKELGIIKVPSADKGYIYGLPKAGLVKVKSQNVFEVSVMDKMINLRLVPGSSAVVKRR
                     ILEQFQEHVFSVIADDDSILLIVTNEGIISQIEQTVRGW"
     gene            complement(5588..6409)
                     /locus_tag="U1335_001357"
     CDS             complement(5588..6409)
                     /locus_tag="U1335_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEM5231824.1"
                     /translation="MAKERVDVLAFKQGLFETREQAKRGVMAGLVISVINGERYDKPG
                     EKIDEGIELKLKGEKLKYVSRGGLKLEKALQVFHLSVEGQTTIDIGASTGGFTDVMLQ
                     AGAKQVYAVDVGTNQLAWKLRQDERVISMEQYNFRYAELGDFELGQPSFASIDVSFIS
                     LSLILPALHRILAEGGQVVALVKPQFEAGREQIGKNGIVKDKSVHLKVLEEVTKMAVE
                     TGFSIKALSFSPVQGGHGNIEFLAHLEKSTQPNQIDKEVITTTVYQAHEEFKKDE"
     gene            complement(6402..7274)
                     /locus_tag="U1335_001358"
     CDS             complement(6402..7274)
                     /locus_tag="U1335_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000256278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEM5231825.1"
                     /translation="MVDVKRIDQEIRDFYYNRGTIVSEELIDAILYSIDGGGKRIRPV
                     LLLQIVEGFGVELQQAHYQVAAALEMIHTGSLIHDDLPAMDDDDYRRGRLTNHKKFDE
                     ATAILAGDSLFLDAFGLLSLADLPNQVLLELVQLMSLASGTFGMVGGQMLDMLGEGKK
                     LEIFDLINIHSNKTGRLLTFPFHAAGIITQQPSSVVGSLWQAGMLIGHAFQVRDDILD
                     VTADFDELGKTPRKDLAAEKATYPSLLGLEESKFIVQDSLNKAVAIFKELEEHNGFKG
                     QEVYQLIESLRING"
     gene            complement(7274..7489)
                     /locus_tag="U1335_001359"
     CDS             complement(7274..7489)
                     /locus_tag="U1335_001359"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002963102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEM5231826.1"
                     /translation="MSKQTKTFEENLAELEGIVTKLERGDVALEEALAEFQKGMVLSK
                     DLQKTLAEAEKTLVKVMQADGSEAEMD"
     gene            complement(7464..8807)
                     /locus_tag="U1335_001360"
     CDS             complement(7464..8807)
                     /locus_tag="U1335_001360"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEM5231827.1"
                     /translation="MVEYLSVSHLTKYLKLKFDRDPYLEKVYLTGQVSNFRKRPSHQY
                     FSLKDDKAVIQATMWAGVYKNLGFELEEGMKINVIGRIQLYEPNGSYSIVIEKAEPDG
                     IGALAIKFEQLKQALTQEGLFKEEFKQALPRFTKKIGVITSPSGAVIQDIITTVSRRF
                     PGVEIVLYPTKVQGDGAAQEVVTNIQRANERDDLDVLIVGRGGGSIEDLWAFNEEIVV
                     RAIFESRIPIISSVGHETDTTLADFVADRRAATPTAAAELATPVTKADLLGYLNQQEN
                     RAYQAMTNRLKYLRGQLEKISQSVMFRQPERLYDGYLQKLDRLTNQLQTRMKELYSQQ
                     KQASLLLQQRLQGVHPGRKVESFQKRIIQQERLLKSNMANIYDNKMAKADKLIEALTM
                     LDTSRIVARGYAMIRQDGRVIDSVENVQMGENLTIQMKDGQLDVEVKHVQTDENI"
     gene            complement(8971..>9409)
                     /locus_tag="U1335_001361"
     CDS             complement(8971..>9409)
                     /locus_tag="U1335_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000564846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ISAs1 family transposase"
                     /protein_id="HEM5231828.1"
                     /translation="RSQIEVRDYWISHDVKWLSQRHPKWKKLCGIGMAKNTVDKGGVI
                     TEEVRYFILSFKGDVQTFSQVVRGHWSVESLHWLLDVVYREDKNQTLDKRATFNLNAI
                     RKVCLHLLQNMTFPKEKLSYRRKQRYVSVHLEDYLPQLFGHRG"
BASE COUNT         2609 a         2214 c         1698 g         2888 t
ORIGIN      
        1 attgagcaca taccgaactg cattactagc ggaatttatg agtcttaacg gttgccgtat
       61 cggcgaagct gtcagccttg agctagaaaa ccgtgatttt gagaccaaaa ttttacaatt
      121 acacggtacc tacgaccata ctgaaggcta tcgtaacggt gagaaaacga cccaaaaaac
      181 caacgcttcc tatcgtgaaa caatcatgac caagcgagaa atggaaatta tagaggaatt
      241 ggaattcatg aatgagctag aaaaaaatac caacccacgt tatcgggata tgggctacat
      301 ctttacaacc aagaatggcg tacctataca aaccaactct ttcaacctag ccttgaagaa
      361 tgcaaatcag cgacttgaaa aaccaattca gaaaaaccta accagccaca tcttccgtca
      421 tacccttgtc agccgtctag ctgagaataa tgtcccttta aaagctatta tggaccgtgt
      481 ggggcatgca gatgccaaga caactatcca aatttatacc catgttacca agaaaatgaa
      541 atcaaatgtg gcagatatca aggaaaacta ctaaagtttc tctctctttg acgcaaaata
      601 cttttgcttc atttccaacc tcccagagtc actcccctga ctctgggagc cccaaaacac
      661 agaaaaaagc ccgtcggaca agctagaaag cttgatatga cgggcttttt gatgcttagc
      721 ctcgctcttt tgtttttaag cgagggataa aacagtctat ccccagtttt gctctcccgt
      781 tttcaagcaa aagataaaaa ggtccactgg acctttttat tatttaacag cgtctttaag
      841 agctttacca gctttgaatg ctggaacttt tgaagctgcg atttcgattt ctgcacctgt
      901 ttgagggttg cgacctgtac gtgctgaacg ctcacgaact tcaaagttac cgaaaccgat
      961 taattgtact ttttcaccag ctgcaaggta gtctgctact gctccgaata ctgcttcaac
     1021 agctgctgct gagtcttttt tagtcaatga agtcgcttct gcaacttttg caatcaaatc
     1081 ttgtttatta gccatttgct aagtcctcca ataattttct gagttattac tcacttctat
     1141 atagtaccta attttaggcg tttggtcaag tttttaatgc tatttcactg tctttttctg
     1201 tagatatcaa caatgaattg gtcgttgtac aaatcaatcg tattcgcctt tccatacaga
     1261 ccaaatttgt tcttcagttc tgtcagttga acctgtactt gcgcttgttc ggagtctatt
     1321 tttacaaagg caggtagttt ataatttttt tgtaaataag ctaatacctc tgctttcggc
     1381 aaggataaac ttccaactga tatttctgtt atccgtaaca aaatactgcc atcttccatt
     1441 ttgctaggtt gaaaataaat atagagtggg atagtcacac caaaaacctg atagctgcct
     1501 tcaaaaacta cttgttgact cgttacgaat aattgatagg aaaactcttc cgtctgatac
     1561 tcttttagat agttagtgat ggtttggttg agctgttccc tattagtgga gaaggtccca
     1621 accttggtat cttctccact agtctgaacg agctttgtta aatcctctct atctgtttga
     1681 atccgtgtat agaggactat tccacaacca atcaataaag ccaactgggc taaaaatagc
     1741 catttccaaa tattaaggtt cccagctttc cgtggtctca ttcattctct ccaatatcgc
     1801 ttttttcata atctcatatc cagtattatt gggatggaaa ctgtcttcct catacagtaa
     1861 attattggta acttggctac cattctgact aataccagcc tccccttcca atcctttata
     1921 gagcaaatca ttgatcggaa caaagtagac atgctgatat ttttcagtta tctgttctgt
     1981 catagcattc caattatcaa caattgtctg catttctgtc aattcaggaa aattgaggta
     2041 aagtggattg taaatcccga caacatagat gggaagattt ggattattct tacgcgctgt
     2101 cataataatt gtatccaatc gttttccgta atcttttgcg ggcttatcaa aagttgaaac
     2161 tttaagattg gcaatgtttt taataatagc cttgcgcaaa tcgttgccac caactgtcag
     2221 agttaacaga tctgctgttt ttaagtaact tatcagctcg ccatcttcct tcattcgctt
     2281 aagaatctga ttactggtat tcccagaaac tccgaaattt ttataatcta cttcataacc
     2341 ataatcgtta gttagagatt gagccaacaa gggaacaaag cccccctgtc cagttgtatc
     2401 tccaacacct tctgtcaaag aatcaccaag tgccacatat cgaaaactga ttttttctga
     2461 tacggtaagc tcttgcctgg agattcgaga tgaggcaaca ggaatgagca gatgaaatag
     2521 aaaaatcgac cctagaattg ccagaaaaaa gaaaacaaag ccttgaatca acttcctgtt
     2581 attcataacg aatcaaaata gcccaggcat cctcaccagt atgagtttga atgatggaac
     2641 ctgtctctaa aactgaaatt ccttttgaga cgtactcttg taattgactc ttcatttcat
     2701 ttgcgaaatc agccgttcct gaataggaaa taccaatctc ggctactttt ttatctacta
     2761 gagttgcagt gaactcttcc agccattttt taaaggtctt attacctcgt cctttgacaa
     2821 tcggagtcag ctgatggtct ttcatttcca tgatgacacg gatattgagt aggctactca
     2881 gcatcccttg aacacgtcca atacgaccac ccttgactag attttctagg gttgatacac
     2941 cgatgtataa ttctgttttt tctttgactg tttcaatagc tgcaaggatt tcttctttgc
     3001 tggcaccagc ttgtgccatg cgtgctgctt ctacaacttg gaatttttca gcctgatctg
     3061 taaagcttga atcgagtatt gtcacatcag caccagaaag ggttgctcct tgtctagcag
     3121 cttctactgt ccctgacaag gcatgcgaca agagaatggc aataatctga ctgccatctt
     3181 tagccaaatc agcaaaagtt tccgcaaaga ggcctactgg gggctggctt gtttttggca
     3241 agtttttcga cccacgcatg agctctaaga attctccttc ttttaaatcg ttgtcagagt
     3301 atacgactcc gtcaaccatt acagataatg gaacaactgt tatattcaat tcttcgacca
     3361 aactgggttc gatagtcgta cttgaatccg taacaatctt aatctttgac atatttcatc
     3421 ctacaattct cttcaatttt gccatctatt ataacaaatt ttaactaaaa aataaacttt
     3481 ggacataagc aaaaaggcta gtcgcctaac ctttttctac taattctttt gcttgattac
     3541 gggctgcatc tgtgattttg tcgccggcta acatcttggc aatttcctca atacgctctt
     3601 ctttggtcaa gagacggaca cgagaaacag tcgaatgttc gtcggatatt ttctcaataa
     3661 agaactgata atctgcaata gcaatgactt gtggtagatg agaaatcgcc aatacttgac
     3721 catattgtcc gattttataa attttctggg caatggcctg ggcaacacgg cctgaaactc
     3781 ctgtatctac ctcgtcaaag acgatggaag tcttgccttc cttacgggca aaggctgact
     3841 taatggccaa catcaaacga gacaattctc ctccagaagc caccttaacc agaggcttga
     3901 agtcttcgcc agggttggtg gagatgtaaa attctactgt ttcatttcct tctcgattaa
     3961 attttccttt agtaaatcga acttggaaac gagctttctc catatacaag tcttgcaatt
     4021 cttggcgaat aatatcttct aaaacaagag ccaattcatg gcgtgattgg ctgagctgac
     4081 ctgctcgttc aaccaattct ttctctaagt tcttaagctg gacttccaaa tcatctccag
     4141 ataaatcatt gcctgtcaat agattgtatt cttcactgat tttactaaaa tagtccaaaa
     4201 catcatcgac agttccacca tatttctttg taatggtatt gagcaaatcc agacgacttt
     4261 ccaattgcaa gagacgattg ccgtcaaagt ctagattgtc caccacatcg ctgagacgct
     4321 tggtcacatc ttcaacgaca taataagctt ctgtcaggct agaagagagc tgtttgtagt
     4381 ctggatcaaa ttcttccaga ctttgcaagt cactcatagc tgagcgtagg ttgttcaagc
     4441 ttgaaaaatc ttcattgtct aacagtgcat aggcattggt cagtgtatct gcaatttgtt
     4501 tgtggttgag cagtttatcg cgttcctgat tgagttgaat atcttcgcca gacttcaaat
     4561 ctgctgcttc gatttcagca atttggtatt ctagcatctc aatccgcgcc ttgtgttctt
     4621 gctcattttt ttgcttttca agaactcgtt tgcgaagact acgataagca tcaaaggttg
     4681 tctgataacg gtctttaaga ctccaaaatt catcttctcc gaaactgtcc aaaagacgga
     4741 tatggtgttg ggatttcatc aattcttcct ggtcatgttg accatgaata tctactaaat
     4801 attgcccaat ctgtttcaag acagataaat tgaccatttg tccattgaca cgactgaccg
     4861 aacggccatt ttgtaagatt tcacgacgga taatgagctc gtcagctact tcaatcccct
     4921 gttcaagcaa aatctgctcg agagctctgc tattttcaaa ggaaaaaagc ccttcaatct
     4981 cagccttggc ggccccatgt ctgataacat ctgtcgtcgc acgcgcccct agcatcaggt
     5041 tcatggcgtc gatgataatg gatttacctg cacctgtttc accagatagg atggtcatcc
     5101 cgttttcaaa attcagtgat acctgctcaa taatggcgaa gtttttaatg gacacttcta
     5161 gtaacatggc taccaccctc taaccgtctg ttcgatttgc gaaataatgc cttcgtttgt
     5221 aacaatgagc agaatactgt catcatcagc aatcactgaa aaaacatgtt cttgaaattg
     5281 ttccaaaatc cggcgtttga ccacagcaga gcttccaggt accagacgga gattaatcat
     5341 tttatccatc actgagactt caaaaacatt ctgcgatttt accttaacaa gacctgcctt
     5401 tggtaaacca taaatatatc ccttatccgc tgatggaacc ttaataatgc caagttcctt
     5461 gatatcacgt gaaaccgttg cttgtgttgc attgacaccc attgcttcta gacgttcaac
     5521 aatttcttcc tgtgtatcaa taggaaatcg gactaccaaa tctttaatga cttctaatcg
     5581 ttctcgttta ttcatccttt ttaaattcct catgtgcttg atagactgta gttgttatga
     5641 cctctttatc aatctggttt ggttgtgttg atttttctaa gtgcgctaaa aattcgatat
     5701 tgccatgacc tccttgaaca ggggaaaagc taagggcttt gattgagaag cctgtttcca
     5761 cggccatttt tgtcacttct tccaagactt tcaagtgaac ggatttatcc ttgacaatgc
     5821 catttttccc aatctgttca cgtccagcct cgaattgggg tttgacaaga gcaacaacct
     5881 ggccaccctc cgctaaaata cgatggagtg ctggcaaaat cagactcaat gagataaagc
     5941 tgacgtcaat ggacgcaaaa cttggttgac caagttcgaa atctcccaac tcagcatagc
     6001 ggaaattgta ctgttccatg ctgatcacac gctcatcttg gcgcaatttc caagccagtt
     6061 ggttggtccc tacatccaca gcatagacct gcttggcacc agcctgcaac ataacatccg
     6121 taaatccgcc tgtcgaagcc ccaatatcaa tcgttgtttg accctcaact gataagtgga
     6181 aaacctgcaa ggctttctcc aatttgagac caccacggct gacatacttg agtttttccc
     6241 ccttgagctt gagttcaatt ccctcgtcaa tcttctcacc tggtttgtcg tagcgttccc
     6301 cgttgatgac ggatataact aagccagcca taacaccgcg tttggcctgc tcccgcgtct
     6361 cgaaaagccc ctgtttaaaa gctagtacat ctactctttc cttagccatt gattcgtaaa
     6421 ctttctatca attgatacac ttcttgcccc ttaaagccat tgtgttcttc taattcctta
     6481 aaaatggcca cggccttatt caatgaatcc tgaacaatga atttggactc ttctaaccct
     6541 aacaagcttg gatatgttgc tttttcagcc gccaaatctt tccgaggcgt tttgcccaat
     6601 tcatcaaaat ctgccgttac atctaaaata tcatctcgaa cctggaaggc atgaccaatc
     6661 aacatcccag cttgccacaa ggaaccgaca acggaactag gctgttgcgt aataatccct
     6721 gctgcatgaa atgggaatgt caataatcga cctgtcttgt tgctatggat atttatcagg
     6781 tcaaaaattt ccaatttttt tccttcacct agcatgtcca gcatttgacc accgaccatc
     6841 ccaaaggttc cagatgctaa tgacataagc tgtaccaatt caagtaaaac ctggtttggc
     6901 aaatcagcca gagacaggag gccaaaagcg tccaaaaaga ggctatcgcc tgctaaaata
     6961 gctgtcgctt cgtcaaattt cttatgattg gtgagtcgac ctctacggta atcatcatca
     7021 tccatggcag gaagatcatc gtgaatcagg cttcccgtat gaatcatctc taaggcagcg
     7081 gccacttggt agtgggcttg ctgtaattcg accccaaatc cttccacgat ttgaagcaat
     7141 aagaccggtc gaatccgctt tccaccacca tcaatcgaat acaaaatcgc atcaattaat
     7201 tcttccgaaa caattgttcc acggttgtaa taaaaatcgc gaatttcctg atcaatccgt
     7261 ttcacatcaa ccattaatcc atctccgctt cactgccatc cgcctgcatg accttgacca
     7321 aggtcttttc agcttctgct agtgtctttt gtaggtcttt cgataggacc attccttttt
     7381 gaaactcggc aagtgcttct tccaaagcca catcgcctcg ctccaatttg gttacgattc
     7441 cttctaattc agctaagttt tcttcaaatg ttttcgtctg tttggacatg ttttacctcc
     7501 acatcaagtt gaccatcctt catctggatg gttaggtttt cacccatttg tacattttct
     7561 acactatcga tcacccgacc atcttgacga atcatggcgt agccacgggc tacgatgcga
     7621 ctggtatcca gcatagtcaa ggcctcaatc agcttgtccg ccttggccat cttattatca
     7681 tagatattag ccatattgct cttcaagagt cgttcctgct ggataattct tttttggaaa
     7741 ctctcgactt tacggcctgg atgcacacct tgtaatcgtt gctgtagtaa aagactagcc
     7801 tgtttctgct ggctgtagag ttctttcatc cgtgtctgca attgattggt caagcggtct
     7861 aatttttgca aataaccatc atacaagcgt tcaggctgac ggaacatgac tgactggcta
     7921 attttttcaa gctgacctct taggtatttc aaacgattgg tcatggcctg ataggctcta
     7981 ttttcctgct gattgaggta gcccagtaag tctgccttgg tcacaggtgt tgccaattct
     8041 gcggcagctg tcggagtggc tgccctgcgg tctgccacaa aatctgccag agtcgtatcc
     8101 gtttcgtgac ccacactgga aatgatagga atacgggatt caaaaatagc ccgaaccaca
     8161 atttcttcat tgaaagccca caggtcttca atagaaccac caccacgacc aacaatcaga
     8221 acatccaagt catcccgttc attggctctt tggatattag taacaacctc ctgagcagca
     8281 ccatctcctt gcaccttggt cggatagaga acaatctcta cgcctggaaa acgtcggctg
     8341 accgtagtga taatatcttg aatgaccgct ccgctcggac tggtaataac cccgattttc
     8401 ttggtaaacc gtggcaaggc ttgcttgaat tcttctttaa ataagccttc ctgtgtcaga
     8461 gcttgtttga gctgttcaaa cttgattgcc aaggctccaa taccatctgg ctcagctttt
     8521 tcaatgacaa tggaataaga accatttggt tcatagagct gaatgcgccc aatgacattg
     8581 attttcattc cctcttcaag ctcaaagccc agattcttat agacgcctgc ccacatggtc
     8641 gcttggatga ctgccttgtc atccttgagc gaaaaatatt gatggctagg gcgtttacgg
     8701 aagttggaca cttgacctgt caaatacacc ttctccaaat acggatcgcg gtcaaacttt
     8761 aattttaaat acttagttag atgactaacc gataaatatt caaccatgtc cactccttct
     8821 atattgtatc cctactatta taccaaattt tgcactttta tacagaacta ggcctattat
     8881 ttccgcgccg tacgcatgaa aaatttcttc tctccttttg tcctcggaaa taactgcttt
     8941 agacttgata tctacttttg tgctaccacc ttatcctcga tgtccaaata attgtggcaa
     9001 ataatcctcc aaatggacag aaacatagcg ttgtttgcga cgataactca acttctcctt
     9061 agggaatgtc atattttgta aaagatgaag acaaacttta cgaatagcat ttaaattgaa
     9121 agtagctcgt ttatctaagg tttggttctt atcttctcgg taaaccacat ctaacaacca
     9181 atgtaggctc tcaaccgacc aatgaccacg aacaacctgt gaaaaagtct gcacatcacc
     9241 cttgaaacta aggataaagt atcgaacttc ttccgtgata acgccgcctt tatcaacggt
     9301 attcttagcc ataccaattc cacaaagttt tttccatttc ggatgtcgtt ggctcagcca
     9361 tttcacatcg tgagaaatcc agtaatccct cacctcaatc tgactgcgt
//
LOCUS       DASGAC010000078         9379 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.078, whole genome shotgun sequence.
ACCESSION   DASGAC010000078 DASGAC010000000
VERSION     DASGAC010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9379)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9379)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9379
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.078"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(86..1756)
                     /gene="dnaX"
                     /locus_tag="U1335_001362"
     CDS             complement(86..1756)
                     /gene="dnaX"
                     /locus_tag="U1335_001362"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEM5231829.1"
                     /translation="MYQALYRKYRSQTFGEMVGQEVVATTLKQAIEQGKISHAYLFSG
                     PRGTGKTSAAKIFAKAMNCPNQVGGEPCNDCYICQAITEGSLEDVIEIDAASNNGVDE
                     IRDIRDKSTYAPSLATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHK
                     IPATILSRVQRFEFKSIKVTDIQEHLAAILTKEGLIFDEQALTIIARRAEGGMRDALS
                     ILDQALSLSQDQQVTLEIAEEITGSISLRALDDYVASLRQGDSVTALQHLQILFDQGK
                     SMSRFATDLLHYLRDVLIVQTGGEDTHLTTGFSENLALEQARIFTMIEMVTRGLADIK
                     SSPQPKIYAEMMTIRLAEDSSPSGAMAEQLPADLLGQLASLQQQVADLQKQLGQLSSQ
                     PGAVKPVSRKPQAPKKYRLDTSKVHAILQEAMENPTLARENLTRLQNAWGEIIESLSG
                     ADRALLVGSQPVAANENHAILAFDSPLNAEQTMKRDNLNTMFGNILSKAAGFSPQILA
                     IAQEDWVSIRAEFSAKAKGQKTQEIEKEASLVPEEFGFLADAVEIRND"
     gene            complement(1756..2253)
                     /locus_tag="U1335_001363"
     CDS             complement(1756..2253)
                     /locus_tag="U1335_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEM5231830.1"
                     /translation="MTKQEKISNYQLLLAQLEALLDGETNALANLSNASALLTQALPN
                     SVFTGFYLYDGSELILGPFQGGVSCVHIALGKGVCGEAAAKRQTILVDDVRLHDNYIS
                     CDATALSEIVVPMVKNDQLLGVLDLDSRLVADYDTIDQDYLEKFVTLLIEKTDWNFAM
                     FGEKR"
     gene            complement(2351..3970)
                     /locus_tag="U1335_001364"
     CDS             complement(2351..3970)
                     /locus_tag="U1335_001364"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012948.1,HMM:NF018196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM5231831.1"
                     /translation="MKIKRSSSKKQLHKWTKLGVGLAAVTVLGGGTTLAGIDLFHVDT
                     VYAQAQESVTAVLTFYDVSDLSEIADRVYIDVKPGESISYTFPVFDGYTLHEDYDNVL
                     VLDYDDVVRMNGRTYATGFRKVEKPAGDTNSTDTNTVNYTIQLVDQDGQVLQTIQRSG
                     VEGTEVTFDFPVISGYRVGKAEGFESGTVGKNGSFRLVANKTVKVYYDKAPSIDSLIR
                     PEQRVEYQKVFDTFHTTVLKAFEVYKKELGVDHIIRLSEDEAKFNQITQSEDLTTLQL
                     ELILVEYLFNKPVGLVLTDQDIINAIGWAPGYWDYQISYHREITQRLEKAMANIAASK
                     AIPTVPVDQSITIKAVYTEEQIEPGQKVDVLKEIEYTLKPGESVVLEPLAFEGWTSRV
                     VQESQTVTYEEAKARPNKEYYFYYIEEGTTPTEKPIETPAETPTEKPAEQLVETPTEQ
                     PVEKSVERPTAKPTGQSASEKQATKQGDKEPAAPASQSKQSTDKPAPASQSQAKSLPA
                     TGEVSSILHLTGLGLLGLAGLVVKRRQRKSS"
     gene            complement(4142..4411)
                     /locus_tag="U1335_001365"
     CDS             complement(4142..4411)
                     /locus_tag="U1335_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HEM5231832.1"
                     /translation="MSIKQMVSMALVVWNLLVFITYGMDKGKARKNAYRISEKTLLLM
                     SYFGGGLGAWAGGTHFRHKTQKKYFQLAWAIGVLIDAVIMYWMWK"
     gene            complement(4499..5038)
                     /locus_tag="U1335_001366"
     CDS             complement(4499..5038)
                     /locus_tag="U1335_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM5231833.1"
                     /translation="MPKQRILPHIILGIMGASGQMVTGKQITDYVQRDLGEFWQVAHS
                     QVYPELKRMTKEELITCHAVPGNEKEKQYAMTATGRQILDEWLSIPNEETPQQKDLFS
                     IKMFFIREKDDPRIPGLLQSQIELVTKHLKHLDSRKVELFSTKESIQDNYGHYLILTR
                     SIERNRAQLKWLEDTLAEM"
     gene            complement(5040..5669)
                     /gene="udk"
                     /locus_tag="U1335_001367"
     CDS             complement(5040..5669)
                     /gene="udk"
                     /locus_tag="U1335_001367"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HEM5231834.1"
                     /translation="MTQKPIIIGVTGGSGGGKTSVSRAILDNFPNARISMIEHDSYYK
                     NQSHLTFEERILTNYDHPLAFDTDLMIYHLGELLAGRSVDIPIYDYTQHTRSEKTYRQ
                     EPQDVFIVEGILVLEDKRLRDLMDIKIFVDTDDDIRIIRRIKRDMEERGRSLDSIIEQ
                     YTSVVKPMYHQFIEPTKRYADIVIPEGVSNVVAIDLINTKVESILRERG"
     gene            5752..6738
                     /locus_tag="U1335_001368"
     CDS             5752..6738
                     /locus_tag="U1335_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM5231835.1"
                     /translation="MLNFGIVGTSDISHKFISSAHLSKYLQLSAIFSRKLETALSFST
                     NYENVKLYTEWIKFLSAPIDLVYIASPNALHFEHAKAVLKAGKHAIVEKPMVSTPQEL
                     AQLRQIAKENGVFLFEAARNYHEEAIAIIRDFLKDKTVFGANFSYAKYSSKMPDLLAG
                     QTPNIFSTDFSGGALMDLGVYTLYTAIGLFGRPNAARYTAQQLPSSIDLNGTGQLTYD
                     DFLVSIQAGKNITSNLPSEIYTSEGTLTLNACQHISSAIFTKHDGSQVVLPIRAQEDA
                     MLEEVQAIAQAIQTGNHDLANEWLDVAEIVHQTLYTMRQDAGIIFKADNNEI"
     gene            6728..7810
                     /locus_tag="U1335_001369"
     CDS             6728..7810
                     /locus_tag="U1335_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5231836.1"
                     /translation="MKSKFPSSWTDQLTLLGFEDFTPIQVQAFDPIANGKSLLAISPT
                     GTGKTLAYLWPSLLALTPKKAQQLLILAPNTELAGQIFDVCKTWSETIGLTAQLFLSG
                     SSQKRQIERLKKGPEILIGTPGRIFELIKLKKIKMMNINTIVLDEFDQLFSDSQYQFV
                     EKIINYVPRDHQLIYMSATAKFDRQKIAEDIESIDLSEQKLDNIQHCYMMVDKRDRLE
                     TLRKFANIPDFRALAFFNSLSDLGASEDKLLYNGVNAVSLASDVNVKFRKVIIERFKN
                     HELNLLLATDMVARGIDIDNLECVLNFEVPFDQEAYTHRSGRTGRMGKEGLVITLVSS
                     PSELKQLKKYASVQEVILKNQELYKI"
     gene            complement(7877..9274)
                     /locus_tag="U1335_001370"
     CDS             complement(7877..9274)
                     /locus_tag="U1335_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEM5231837.1"
                     /translation="MKKVSFWLGINIALLGTMVSLAVWLFAGLQERQVSQFIEEKQQT
                     ILAKGKGKIQEGNIDTTHVVAALPTDDAGHVLGPVESRMISYVQRRFGHKKPAGKIQK
                     LVFVSSIEGKTNFKNVTAREIQAEHYKVDNLQIKKQDKLPSERVLLTQDNELFTLEDL
                     LPNLSSAVSIIVDHLREALLAQGMKETDVEAIVKKFETLDLNAISFSYGDSQLTLQLP
                     DGYGINQLVLPISDLYPVVKSDYLVDADKVGYDEYMAAQVVDKKHLRQVALTFDDGPN
                     PNTTPVVLDLLKKYNAKATFFVVGKAVAGNEAILRRMVAEGHVIANHTWNHPNLVTIS
                     GEQVQREIQDTQAAITEATGIVPTMVRPPYGSVNQAVVNQMGLPSIYWSVDSKDWKSR
                     NPQAILKEIKEQTCPGSIILMHDIHQSTVDSLESVLQYLTGEGYNMVTVTDLLASPLN
                     PQLIYYSQELSGPAQ"
BASE COUNT         2643 a         2166 c         1768 g         2802 t
ORIGIN      
        1 ctccaaatct ggcctaatca actgtgcggg ggtgggaaga cgaactcttt tttgacctaa
       61 tagagttctt tcccactccc attttctaat catttctaat ctcaactgca tctgcgagaa
      121 agccaaattc ttctgggact agactggctt ctttttcgat ttcctgtgtc ttttgccctt
      181 ttgctttcgc cgaaaattca gcacgaatac ttacccaatc ttcctgagca atagctaaaa
      241 tctgtggtga aaaacctgct gccttgctga gaatatttcc aaacatggta ttgagattgt
      301 cacgcttcat cgtctgttca gcattaagcg gagaatcaaa ggctagaatc gcatgatttt
      361 cattggcagc gactggctgg gaaccaacca acaaggctcg atctgcacct gacagactct
      421 caataatttc tccccaagca ttctgcaagc gagtcaaatt ttcacgcgcc aaggttggat
      481 tttccatagc ttcctgcaaa atggcatgaa ccttgctggt atccaatcgg tacttcttcg
      541 gagcctgtgg cttgcgtgaa actggcttaa cagcacctgg ttgactagat aattgaccta
      601 gttgtttctg taaatccgca acttgttgtt gcagactggc tagttgaccc agtaaatcag
      661 ctggtagctg ctctgccatg gcccccgaag gagaactatc ttcagccaaa cgaatggtca
      721 tcatttcagc gtaaatcttc ggctgaggac tggacttgat gtccgccaaa cccctggtca
      781 ccatctctat catggtaaaa atccgtgcct gctcaagagc tagattttct gaaaaacctg
      841 ttgttaaatg cgtatcctct ccacccgtct gcacgataag gacatctctc aaatagtgca
      901 aaagatctgt cgcaaaacgg ctcatactct ttccttggtc aaacaagatt tgtagatgct
      961 ggagagctgt gacactatcc ccttgacgca gacttgccac atagtcatcc aaggcacgca
     1021 agctgataga acccgtaatt tcctcagcaa tttccaaggt cacttgctgg tcctgactaa
     1081 ggctgagagc ctgatccaaa atggataggg catcccgcat ccccccttct gcccgacgcg
     1141 caatgatcgt cagagcctgc tcgtcaaaga ttagcccttc cttggtcaaa attgcagcca
     1201 agtgctcctg aatgtccgtc accttgatgg acttaaattc aaatcgttgc acccttgaca
     1261 gaatggtagc aggaatcttg tgcaattccg tcgttgctag aataaagacc acattttccg
     1321 tcggttcttc caaggtcttc aagagggcat tgaaggctcc agtagacagc atgtggacct
     1381 cgtcgatgat atagacctta taggtcgcaa gactaggtgc ataggtcgat ttatcacgaa
     1441 tgtcacggat ttcatcaaca ccattgttgg aagcagcatc aatctcaatc acatcttcca
     1501 gactgccctc ggtaatggcc tgacagatat agcaatcgtt acaaggctcg cctccaacct
     1561 gattaggaca gttcatggcc ttggcaaaaa tcttagctgc cgatgtctta cccgtaccac
     1621 gaggacctga aaagagatag gcatgactga ttttcccttg ttcaatggcc tgtttgagcg
     1681 tggtcgcaac cacctcctgc cccaccatct ccccaaaggt ctggcttcgg tacttcctat
     1741 ataaagcttg gtacattagc gtttttctcc aaacatagca aaattccagt ccgtcttctc
     1801 aatcaagaga gtaacgaact tttctagata gtcttggtca atcgtatcat aatcagctac
     1861 caatctcgaa tccaagtcca aaacgcccag caactggtcg tttttcacca ttggcacaac
     1921 gatttctgat agggctgtcg catcgcagga aatatagtta tcatgtagac gaacatcgtc
     1981 tacgagaata gtctggcgct tagctgcagc ctcaccgcag acaccctttc caagtgcaat
     2041 atgaacacag gaaacgccac cctgaaaagg ccccaaaatc aattcactac catcatacaa
     2101 gtaaaatcct gtaaagacag agtttggtaa agcttgagtg agcaaagcag aagcatttga
     2161 tagattggct aaagcattgg tttcaccatc aagaagagct tccaattggg ccaacaataa
     2221 ttgatagttt gaaatttttt cttgttttgt cataggaaca ttatagcata gaaagacgga
     2281 gcttgacagt tccgactgtt agaaatcagc aaaaaacgag acctgtcgat ctcgttttta
     2341 ggatagctaa ttaagacgac ttgcgttggc gtcttttcac gaccagacct gctagtccca
     2401 ataagcccag acctgtcaga tgtaggatgg agctgacttc accagtggct ggtaaacttt
     2461 ttgcctgtga ctgactagct ggtgcaggtt tgtcagttga ctgtttgctt tggcttgctg
     2521 gtgccgcagg ctccttatct ccctgtttgg ttgcttgttt ttctgatgct gactgaccag
     2581 ttggcttcgc agttggtctt tcaaccgact tctcaactgg ttgttcggtt ggggtttcaa
     2641 ctagctgttc ggccggtttt tcagttggag tttcagccgg agtttcaatt ggtttctctg
     2701 ttggtgttgt cccctcttct atgtaataga agtagtattc cttgttaggt cttgccttag
     2761 cttcttcgta agtaactgtt tgactttctt gaactactcg tgatgtccaa ccttcaaatg
     2821 ctaggggttc tagaacaaca ctctcccctg gtttgagtgt atactcaatt tcttttaaca
     2881 catcaacctt ttgaccaggc tcaatttgtt cctcagtata gacagcctta atcgtgatcg
     2941 attgatctac tggaactgtc ggaattgcct ttgatgcagc aatgttagcc attgcttttt
     3001 caagcctctg agtaatttct ctatggtagg agatttgata atcccagtat ccaggagccc
     3061 aacctatagc attgataata tcttgatctg tcaatactag acctactggt ttgttaaata
     3121 agtattcaac taaaattaac tctaattgta aagtagttaa atcctctgat tgggtaatct
     3181 gattaaactt ggcttcatcc tctgacaggc ggataatatg gtctactccc aactctttct
     3241 tatagacttc aaaagctttc aagacagtgg tatggaaggt atcaaaaact ttctgatact
     3301 ccacacgttg ctcaggtcta attaaggagt caatagaagg agctttgtca tagtatacct
     3361 taacagtttt attagcaact agtctgaaag acccattttt cccaaccgtc cctgattcaa
     3421 atccttcagc cttacctact ctataacccg atattactgg aaaatcaaat gtcacttccg
     3481 ttccttcaac tccactccgc tgaatggttt ggagaacttg accgtcttgg tctactaatt
     3541 ggatagtata atttactgta ttggtatcgg tagagttagt atcacccgca ggtttttcaa
     3601 cctttctaaa accagtcgca taagtacgtc cattcattcg aactacatcg tcatagtcca
     3661 acactaatac attatcgtag tcttcatgca aagtatatcc gtcaaataca gggaatgtgt
     3721 aactaatact ctctccaggc ttaacatcta tgtatacacg gtcagctatc tcggacaagt
     3781 ctgaaacatc atagaaagta agaacagctg taacactttc ttgagcctgc gcatagacag
     3841 tatctacatg aaacaaatca attccagcaa gtgtagtccc tcctcccaaa acagtgaccg
     3901 ctgctaatcc aactcctagc ttggtccact tatgaagttg tttcttgcta gaacttcttt
     3961 tgattttcat actaaaaacc tccatttata taaaactttt atgccaaaag gcacgcttac
     4021 cagtatacta aaaaaaaaaa gcaagttgtc aagaaattat gcgcttaata ttcaaatatt
     4081 cggttctttc atggttttca gtcgattttt catattttcg gaaaaagaaa aaggcttgcg
     4141 cctatttcca catccagtac ataatcactg catcaatcaa tacccctata gcccaggcta
     4201 gttgaaaata ctttttctgt gtcttatgcc gaaaatgggt tccacctgcc caggcaccta
     4261 gcccgccacc aaaataggac atgagtaata aggtcttttc tgaaatccgg taggcgttct
     4321 ttcttgcctt acctttatcc ataccatagg tgatgaagac aagtaaattc cacactacta
     4381 gcgccatact aaccatctgt ttgattgaca tacattcctc caattaagtc acatttcttc
     4441 ttactctaac ataatccaaa acaggacaca agaaaaaacg attcggaaat ccgaatcgtt
     4501 acatttctgc cagtgtatcc tctaaccatt tgagctgggc acggttgcgt tcaatagacc
     4561 gtgtcaaaat caaatagtgt ccataattgt cttggatact ttccttggtt gagaacagct
     4621 caactttacg actgtctagg tgttttaagt gcttggtgac tagttcaatt tgactctgca
     4681 acaacccagg aatccgtggg tcatcctttt cacggataaa aaacatcttg attgaaaaca
     4741 agtctttttg ctgaggcgtt tcttcatttg gaatggatag ccattcgtct aaaatctgac
     4801 gaccagtagc cgtcatcgca tactgctttt ccttttcatt tccaggtact gcatgacaag
     4861 taatcaattc ttccttggtc atacgtttta attctggata gacttggcta tgggcaacct
     4921 gccaaaattc gcctaaatca cgttgaacat agtcggtaat ctgtttgcca gttaccattt
     4981 gaccgctagc acccataatc cctaatataa tatgaggtaa tattctttgc ttcggcatct
     5041 taaccacgct ctcttaatat actctccacc ttggtgttaa tcaagtcgat ggctacaacg
     5101 ttgctgacgc cttcaggaat gacgatatct gcatagcgct tggttggctc gataaactgg
     5161 tgatacattg gtttcaccac cgaggtgtac tgctcaatga tactatctaa gctacggcca
     5221 cgctcttcca tgtctctctt aatgcggcga atgatacgaa tatcgtcatc agtatcgacg
     5281 aatatcttaa tatccattaa atcccgcaac cgtttgtctt ccaatactaa aataccttcc
     5341 acaataaata catcttgtgg ttcctgacga taggtcttct ctgaacgtgt gtgctgagtg
     5401 taatcataaa tcggaatatc caccgaacgc cctgccagca attcacccaa gtggtaaatc
     5461 atcaaatctg tgtcaaaggc tagtggatgg tcataattgg tcaatatccg ttcttcaaag
     5521 gttaggtgtg actgattctt atagtaagaa tcgtgttcaa tcattgatat gcgagcattt
     5581 gggaaattat ccagaatggc acgcgacaca cttgtcttgc cacccccaga tccgccggtt
     5641 acgccaataa taatgggttt ctgagtcatc atcatctcct tctattttca atactatttt
     5701 accatgaaac atggtataat ggaaaggata acacaaaaga aatgagaatt tatgcttaat
     5761 tttggtattg ttggcacctc agacatcagt cacaagttca tttcctccgc tcatttgagt
     5821 aaatatcttc aattatcagc gatattttca agaaaactgg aaacagcttt gtcattttca
     5881 acaaattacg aaaatgtaaa attatacaca gaatggataa aattcctttc tgcaccgatt
     5941 gacttagtct atattgccag tccaaatgcc ctgcattttg aacatgcaaa agctgttctc
     6001 aaggccggca aacacgctat cgttgaaaag cctatggtgt ccacacctca agaattggcc
     6061 caacttcgtc agattgccaa ggaaaatggt gtcttcctat ttgaggctgc ccgcaattac
     6121 cacgaggaag ccatcgctat tattagggac ttcttgaagg ataagactgt ttttggggcc
     6181 aacttctctt atgccaaata ctcttccaaa atgcctgacc tcttggcagg acagacccca
     6241 aatatctttt caactgattt ttcaggcgga gccttaatgg atctgggtgt ctataccctc
     6301 tatactgcca ttggcctctt tggcagacca aatgcagccc gatacactgc tcaacaactc
     6361 ccttcatcca ttgatttgaa tgggactggg caactgactt atgatgattt tctcgtaagt
     6421 attcaggctg gaaagaatat cactagcaat ctaccaagcg aaatatatac cagtgaggga
     6481 actctcaccc tcaacgcctg ccagcatatc agctctgcta ttttcacaaa acatgatggt
     6541 agccaagtag tcctacctat ccgagctcag gaagatgcta tgctggaaga ggtacaagcc
     6601 attgcccaag ctatacagac aggcaatcac gacctagcca atgaatggct ggatgtggca
     6661 gaaatcgtcc atcaaacact ttacaccatg cgtcaagacg caggaataat ctttaaggcg
     6721 gataacaatg aaatctaaat ttccctccag ctggacggac cagcttaccc tacttggctt
     6781 tgaggacttt actcctatcc aagtccaggc ctttgatcct attgcaaacg gcaagtccct
     6841 tctagctatc agcccaacag gtacaggaaa aacccttgcc tacctctggc ctagtctatt
     6901 agccctaact cctaaaaaag cccaacaatt gctcatcctc gcaccaaata cagaactggc
     6961 tggtcaaata tttgatgttt gtaagacttg gtcggagaca attgggttga ctgctcaact
     7021 attcttgtct ggttccagtc aaaaacgcca gattgagcga ctaaaaaaag gaccagaaat
     7081 cctgattgga acacctggtc gtatttttga gttgattaaa ttgaaaaaaa tcaagatgat
     7141 gaatatcaac accatcgtcc tagatgagtt tgatcagcta ttctccgatt ctcaatatca
     7201 gtttgttgaa aagattatca attatgtacc tcgtgaccac cagttgatct acatgagtgc
     7261 aacagctaaa tttgaccgtc aaaaaattgc tgaggacatt gaaagcattg atttatctga
     7321 gcagaaattg gataatatcc aacattgcta tatgatggta gataagcgtg accgtttgga
     7381 aactctacgt aagtttgcca atatccctga ttttcgtgct ctggctttct tcaacagcct
     7441 atcagacctt ggtgcaagcg aagataaact actctataat ggtgtgaatg cagtttcatt
     7501 ggcttctgat gtcaacgtaa aattccgcaa ggtcatcatc gaacgtttca agaatcacga
     7561 actcaatctt ctacttgcta cagatatggt tgcacgtggt attgatattg ataacttaga
     7621 atgtgtcctc aactttgaag ttccttttga ccaagaagcc tacactcatc gttctggacg
     7681 tactggacgc atgggcaagg aaggtcttgt catcactcta gtatctagtc ctagcgaact
     7741 aaaacaattg aaaaagtatg cctccgtcca agaagtcatt ctcaagaatc aagagctcta
     7801 caaaatataa tgaacaatat acaaaaggct tagaaccagt gtttctacta acatgattct
     7861 aagcctttta tcattcttac tgggctggac cagataattc ttgtgaataa tagattaatt
     7921 gaggattgag aggactggcg agtaagtctg ttacagtgac catattgtag ccctcgcctg
     7981 ttaaatattg caatacagac tcgaggctat caactgttga ctgatgaata tcatgcatta
     8041 ggataatact tcctggacaa gtctgttctt ttatttcttt caaaatggct tggggattgc
     8101 gactcttcca atctttagaa tcgaccgacc aataaatcga tggaagtccc atctgattga
     8161 caacagcctg gttaaccgaa ccataaggag ggcgaaccat tgttggtaca atacctgtag
     8221 cttcagtaat agctgcctgt gtatcttgaa tttctctctg tacttgctcc ccagaaatag
     8281 tgactagatt gggatgattc cacgtatggt tggcgatgac gtgcccttct gctaccattc
     8341 tacggagaat agcttcattc ccagctacag ccttaccaac aacaaagaaa gttgctttgg
     8401 cattatattt tttcagtaaa tctaaaacta ccggtgttgt gttcggattt ggtccatcat
     8461 caaaggttag agcgacctgt ctcaaatgtt tcttatccac aacttgtgca gccatatact
     8521 catcatagcc aaccttatca gcatctacta ggtaatcact cttcaccact gggtacaaat
     8581 ctgaaattgg tagaaccaac tggttgatgc cgtaaccatc tggtaattgt aaggttaatt
     8641 ggctgtctcc ataactaaag gaaatagcat ttaagtctag tgtttcaaat tttttgacaa
     8701 tcgcttctac atcagtctct ttcattcctt gagcaagtaa ggcttctctt agatgatcaa
     8761 caatgatact tactgcagag gataaattag gtaataaatc ttccagggta aacaattcat
     8821 tgtcctgcgt caacaacaca cgctcagacg ggagtttatc ctgcttttta atttgcaagt
     8881 tgtctacttt atagtgctcc gcttgaattt cacgagctgt tacattttta aaatttgttt
     8941 ttccctctat tgatgaaaca aagaccagtt tttgaatttt tcctgctggt tttttatgac
     9001 caaagcgtct ttgaacatag gaaatcattc gactttctac aggtcctaag acatgaccag
     9061 catcatctgt aggtaaggca gccacaacat gggtcgtatc aatatttccc tcttgaattt
     9121 tgcccttgcc tttagcgagg atggtttgtt gtttttcctc gataaactga ctaacctgtc
     9181 tttcttgaag tcctgcaaat aaccatacag ccaaacttac cattgtgccg agcaaggcga
     9241 tgttgattcc caaccaaaaa ctaacttttt tcatctccaa cctcccattc aaaacatata
     9301 taaactatgc taaatcattt aaaggctctt gtcaagacag ttctataaaa actcataaaa
     9361 agattaggta atactcttc
//
LOCUS       DASGAC010000079         9375 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.079, whole genome shotgun sequence.
ACCESSION   DASGAC010000079 DASGAC010000000
VERSION     DASGAC010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9375
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.079"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            22..>9375
                     /locus_tag="U1335_001371"
     CDS             22..>9375
                     /locus_tag="U1335_001371"
                     /inference="COORDINATES: protein motif:HMM:TIGR04224.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec-dependent serine-rich glycoprotein
                     adhesin"
                     /protein_id="HEM5231838.1"
                     /translation="MNRKRFNKNFDEVGRKSRVKMHKSGKNWVRTVMSQLSLLRVIRG
                     KGQETVSVPLVDSSERLESQRYQYLKAMLASGAVATGAALPTAILAEEQTIAVEQQVE
                     NDTDTVIDKDVVIVETVTTEVVSEAEVSTSRNDASTSVASQSSSVSQSESASLSSSTS
                     ASESASMSMSASASTSTSTSASTSASTSESKSSVSSQSENHSDDAIVSSRVAEASGSS
                     MTATESGTSLIAVEDNGKVSFGVLSGNTEVGQGLALLNNVTQKTARASSEVTMGLSAA
                     SLTSDSSSQSETTQLARSAERVATINYIVKYEREDGSLVSADVKTVSVTTTDDVAQAT
                     VDVLAELPFGYELAEGQQSTVSQTVTENEVNLVTVKVAERTVEKTKSTPEVEAAKKVL
                     EQVVSEAEVLVAIASDLNPVASDVEEVIATIQEQIKNAQLMLGSVDASVSEVEALVAN
                     LQSNNATLGSMLQERSADGALTYSLAVSTTPTYVRVVDDARNDVSSTNKNIINAVEHI
                     KNTNGTITWRITLKPATTSGEVGILLGFSNGTVIDSVTMNGNAVSPYGGSAITGAPND
                     LTKYLYVSRNAATVTVLVTIRPPASDTITYHFRTATNNGRLTGIPSTETDGWGGRVPS
                     WDSSNGVRDIKDPVTDVTANNVYVFKDESIKVAGTNFNQLSGTSGTRVQVGTATDSPT
                     TTASGIKDVTLIDATSGLEDTRGLTVAVEGNTTSKTVYISGTATNARGQYQNKIYAND
                     NHGNFGRSSDNMSLNILEVPSTVEVPFNGTPTDNDFTQAAINAVQAGNATQKSQAGLT
                     AKVMNKTGNTATVRIRTTTGTYKDVTVSLVDRTAPTVQLTSQQIYVFNGESVKILNPS
                     NPTATTNPVSTKIQLATVTDATGVATTASSNGDIQNSSGNSNSRGMAVTVEGSSTTSK
                     TVYLSGTASAGAMGWYGNFLKIADTANPANTTTYNSTDARYHLVILGTTVATIADRDI
                     QSPTFTRVTEQNILDAVSVDFGNASDYNNANKANIRKVLLSNTDTGTVTAGQKTAVVR
                     VYTSTNTYKDVTVNFTYVDRTAPSIDVTANNAFVFKNESVKVADSNFNQLSGTAGTRL
                     QVGTATDPSGINTATIVDSNGTEATRGLTVTTDGTTTSKSIYISGTPTADKNLYTSKV
                     RATDTQNNAGTSQEDLSLYVLEVASDVSLADREVTGARYTDAEIAQAAINAVQAGNAD
                     QKTAAGLTAKVIANPNHTQDRWRPYHTVTVRVMTASGTYKDVRVNFKYVDTTAPTLTT
                     NDLYVFNGVALTTPVDVINQKSDTGTGINNASLRIQESDTGLTINANEQVTGTYTTGA
                     AGLNTRHVQVSDNSTDTNGGPNTTTANLRILVVNPQGASLSKEFTGAVKYTNDEIKQA
                     VLNAMKASGFGTMSEADKTASGLLNLSAYTVLDEHEFTSGEKTVRVQMRNAQGNVAVV
                     NVTINYTNAAPVISNQTNLSVIKRSDATPVTVDLSRGATVTDTEDDRSTTDAYVTRVT
                     YKVKDANGAVLKTIQAPKGQAASIDVSDLPAATYTVDVEATDSAGTTTTSSFQLTVKD
                     NTPPVITAADRTVDKGAVATYDLRTGVTVRDVEDEANNLTPSVTKIVLKDASTNTVIS
                     TITNTSQMTINTSTLDPTKTYTVEVTGSDAEGLTATTSYTLSVTDSAPTTTSISNMAI
                     FKGTRIATVDGTDAVKPVAATDANGFSSVRLYRTQADGTSRVEETNSGFTINQSTGAF
                     SGTASETFNTVGVYSRSLIFTDSFGNATQLQNFKVWVMDATANTSLLNRLYKNYPSEQ
                     DVLNAVTVSTGGSTIGYTKTLTTAIPKTDGTATVRVTTDQGVYKDIPVRITYKSNQRP
                     SVTTVNQTLDKADKAATIDLTRDVEVIDPEDGSSNAGKANSPFISQIEITDSEGNLLS
                     TLTDKAGMQNFSTANLNVGETYRVRVTGSDIEGLTNTHEYVLNVVDTTPTVTVNSGYE
                     NGTGAVYYVFNNTELNKALEPVTVRDDKGVTSITVDAIGNGSTHIPPTGLTFDITSGA
                     TESTVRVTGKHNAGTANGAGIVTRELHAYDADGHVSEAFTPFTLQILNVSDVTKAVLE
                     KPSATEIENWVKATAVGSSSTVLQDAGLTYAVVGTIPDTSGTVNVKVTTRQGIEKTVT
                     VTLNYLTTSVGAITVDSVTPITEQMVKDQVTVSNGTATTAVAQDAQGNPILTVTSTDP
                     TTNTKRGTIRVTVTTTDGFSKDVEVPVTVTNTAPTIATQDATITRQPSGTSTRIDLKD
                     YITITDSEDDKSATDTYTTAIQVVITNPATGYSQTIKAKNGDSLPVDLTNLPAGTYTV
                     SVTATDSTGAVKTATSSITLQENTAPNVTVSDQTIDRGGKTTIDISTGVTVTDTEDDR
                     DPNDSLTTTVTYTVKDSKGSIVYQGSQPNVPVETLVAGIYTVTVAATDAHGAKTEKTY
                     TLKVTDRNSESASASASVSASESANTSASTSASTSASTSASTSASTSASTSASTSAST
                     SASTSASTSASTSASTSVSTSASTSASTSASTSASTSASTSASTSASTSASTSASTSA
                     STSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTIASTSAST
                     SASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSA
                     STSASTSASTSASTSASTSASTSASTSASTSASTSASMSASTSASTSASTSASTSAST
                     SASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSA
                     STSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSAST
                     SASTSASTSASTSASTSASTSASTSASTSASMSASTSASTSASTSASTSASTSASTSA
                     STSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSAST
                     SASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSA
                     STSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSAST
                     SASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSA
                     "
BASE COUNT         2945 a         2221 c         2129 g         2080 t
ORIGIN      
        1 taagttaaat taggagtatt tatgaatcgt aaacgattta ataaaaattt tgatgaggtt
       61 ggacgtaaga gccgtgtcaa gatgcacaaa tcaggtaaaa actgggttcg gacagttatg
      121 tctcaactca gccttttgcg tgtcattcga gggaaagggc aggaaacagt ttcagtacct
      181 cttgtagata gttcagagcg attagaaagt caacgttacc agtacctgaa agctatgtta
      241 gcttcaggag cggtagcgac tggagcagct cttccgacag cgattttggc ggaggaacag
      301 acaattgcag tagagcaaca agttgaaaat gatacagata ctgttattga caaagatgtt
      361 gtcatcgttg agactgttac tacagaagtc gtctcagaag cggaagtatc tacatcgcgt
      421 aatgatgcct cgaccagtgt agctagtcaa tctagctctg tcagtcaaag tgaatctgcc
      481 agtctgtcct cgtcgactag tgcttcagaa tcagcttcaa tgagcatgag tgcttcagcc
      541 tcgacaagta caagtacgtc agcgtccact agtgcatcta catcagaaag taagtcttct
      601 gtaagttcac aatctgagaa tcattcggat gacgcaattg tctcaagtcg agttgcagaa
      661 gcaagtggct cttcgatgac tgcaactgag tctggaacca gcctgattgc tgttgaagat
      721 aatggcaagg tttcttttgg tgtgctgtca ggaaatacag aagttggcca agggctagca
      781 cttttgaaca acgtaactca gaaaacagca agagcaagct cagaagtgac aatgggtctg
      841 tcagcagcga gtttaacaag tgattcttcc agccagtctg agacgactca gcttgctcgg
      901 agtgcagagc gagtggcgac catcaactat atcgtcaagt acgaacgcga agacggttct
      961 cttgtttcag cggatgtgaa aaccgtctct gtcactacga ctgatgacgt ggcacaagca
     1021 accgtagatg ttctagcaga attgccgttt ggttatgaat tggcagaggg acaacagtct
     1081 accgtttccc aaacagtcac tgaaaacgaa gtgaacttag tgacggtgaa agttgctgaa
     1141 cgaacggttg aaaaaactaa gtcaacacct gaagtagaag cagctaagaa agttcttgag
     1201 caggtagtgt cggaagcgga agtcttagtt gctattgcaa gtgatttaaa tcctgtagct
     1261 tcagatgttg aagaagtgat tgcgacaata caggagcaga ttaaaaatgc tcaattgatg
     1321 ctagggtctg ttgatgcttc tgtttcggaa gttgaagcac ttgttgcgaa tttgcaaagc
     1381 aataacgcta ccttgggttc aatgttgcag gaacgttcgg cagatggcgc gcttacctac
     1441 tcattagctg tatctacaac accaacatat gttagggttg ttgatgatgc gagaaatgat
     1501 gtatcctcga ctaataaaaa tatcataaat gcagttgaac acattaaaaa cacgaatggt
     1561 acgattacgt ggagaatcac gctaaaaccg gcaactacat ctggggaagt cgggattctt
     1621 ttaggttttt caaacggcac ggtgattgat agtgtcacta tgaatggtaa tgctgttagt
     1681 ccttatggtg gctcagctat tacaggtgca cctaacgatc ttacaaaata tctgtacgta
     1741 tcgaggaatg ccgctacagt aacggtattg gttacgatta gaccaccagc atcagatact
     1801 attacatatc atttccgaac agcaactaac aatggcagac taacaggtat tcctagcact
     1861 gaaaccgatg gatggggtgg gagagtacca tcatgggatt cctcaaatgg tgttcgagac
     1921 atcaaggatc ctgtaacgga tgttactgca aataatgtgt atgttttcaa agatgaaagc
     1981 atcaaagtgg ctgggactaa cttcaatcag ttatctggta cttcaggaac tagggttcaa
     2041 gttggtacag caacagatag ccctacaacc accgcatcag gaataaaaga tgttactttg
     2101 attgatgcga caagtggtct ggaagatacc cgaggactta cagttgcagt agaggggaat
     2161 actacctcaa aaacagttta tattagtggt acggccacaa atgccagagg acagtatcaa
     2221 aataagatat atgccaatga caatcatgga aatttcggta gatcgtcaga caatatgtct
     2281 ttgaacattt tagaagttcc aagcactgtc gaagttccat tcaatggaac gccgacggat
     2341 aacgacttta cccaagctgc cattaatgct gttcaagcag ggaatgcaac ccagaaatca
     2401 caagcaggtt tgacggctaa agtcatgaac aaaacgggga atacggctac cgttcgtatc
     2461 agaacaacaa ctggaaccta taaagatgtt acagtcagtc tggtagatag aactgcccca
     2521 actgttcagc taactagcca acagatttat gtctttaatg gtgaatcggt caaaattcta
     2581 aatccgtcca atccaaccgc tacgaccaat cccgtttcca cgaagattca gttagcgacc
     2641 gtaacagatg cgacaggagt tgcgacaaca gcaagtagta atggtgatat tcagaattcg
     2701 tcgggtaaca gcaatagtag aggaatggct gttactgtcg agggaagttc tactacttca
     2761 aaaacggttt atctaagtgg tacagcaagt gctggtgcaa tgggctggta tggaaacttc
     2821 ttgaagattg ctgatacagc caatccagct aatacaacaa cctataactc aacagatgca
     2881 agataccatt tggtcattct tggaacgacc gtagcgacaa ttgctgatcg tgatattcag
     2941 tcaccaactt tcacgcgtgt tacagaacaa aacattttgg atgctgtttc agttgacttt
     3001 gggaatgcta gtgattacaa caatgcaaac aaagcaaaca ttcgtaaggt attgctttct
     3061 aatacagata caggaacagt aacagcaggt caaaagacag cagttgttcg tgtttataca
     3121 tctacaaata cttataaaga tgtgacggtt aactttacat atgtggatag aacagcacca
     3181 tctatagatg tcacagccaa caatgcattc gttttcaaga atgagtctgt aaaagtagcg
     3241 gattctaatt tcaatcagct atcagggaca gctggtacac gtctacaggt cggtactgcg
     3301 acggacccgt caggtattaa tactgcgaca attgtcgata gcaatggaac agaagcgacc
     3361 cgcggtttga ccgttacgac agatggtacg accacatcaa aatcaattta tataagtggt
     3421 actcctacgg cagataaaaa tctgtacaca agtaaggtta gagcaacgga tacgcagaat
     3481 aatgcaggta cctcacaaga agatttgtcc ttgtacgtat tggaagttgc gagtgatgtt
     3541 tcactagcag accgtgaagt gacaggtgca cgttatacag acgccgagat tgctcaggct
     3601 gctatcaacg ctgttcaggc aggaaatgca gaccagaaaa cagcggcagg tttgacagcc
     3661 aaggtcattg ccaatccaaa ccatacccag gatcgctgga gaccttacca tacggtgacc
     3721 gttcgcgtaa tgacagcaag cggtacctac aaagatgttc gtgtcaactt caagtatgta
     3781 gatacgactg ccccaacctt aacaacgaat gatttatatg tcttcaatgg ggtagccttg
     3841 accactccag tagatgtcat caaccaaaaa tcagatactg gtacaggaat taacaatgca
     3901 agtctccgaa tccaagaaag cgatacaggc ttgaccatca atgccaatga acaggttact
     3961 ggaacgtaca cgacaggagc agcaggtcta aacactcgac atgttcaagt atcagacaac
     4021 agtacggata ctaatggtgg tccgaataca acaacggcca acttgagaat tcttgtagtc
     4081 aatccacaag gcgcgagctt gagcaaagaa tttacaggtg ctgtcaagta cacaaatgat
     4141 gaaatcaagc aagctgttct aaatgctatg aaggcttctg gatttgggac tatgagcgaa
     4201 gcagataaaa cagcatccgg attgttgaat ttatcagctt acaccgttct tgatgaacac
     4261 gagtttacat caggagagaa gaccgttcgg gttcagatgc gcaatgctca agggaatgtc
     4321 gctgtagtaa atgtcaccat caactacacc aacgcagcac cagttatttc gaaccaaacc
     4381 aacctttctg ttatcaagcg ttcagatgct acaccagtta cagttgactt gtcacgtggc
     4441 gcaacggtaa cagatacaga ggatgataga agcacgacag atgcatatgt aacaagggtt
     4501 acctataaag tcaaagatgc aaacggtgct gttctaaaaa caattcaagc tccaaagggt
     4561 caagctgctt ctattgacgt gagcgatctt cctgcagcga cctacacagt tgatgtagaa
     4621 gcaacggata gtgctggaac gacaacgaca agtagcttcc aattgacagt gaaggacaac
     4681 accccaccgg tgattacagc agctgatcga acggtagaca agggtgcagt tgcaacgtat
     4741 gacctaagaa caggagtaac tgtacgtgat gttgaggatg aagcaaacaa ccttactcca
     4801 tcagttacca aaatcgtcct aaaagatgcg tcaacaaata ccgtcattag tactattaca
     4861 aacacaagtc agatgacgat aaatacgagt acgcttgacc caactaaaac ttacactgta
     4921 gaagtgacag gcagtgatgc tgaaggcttg acggcaacga ctagctatac actaagtgtt
     4981 accgatagtg ccccgaccac gacaagtatc agtaacatgg caatctttaa aggaacaagg
     5041 attgcgacag tagacggtac agatgcggtc aaaccagttg cagcaacaga tgcgaatggt
     5101 ttttcaagtg ttcgtctcta cagaacgcaa gcagatggaa cgagtcgtgt agaagaaacg
     5161 aattcaggtt ttacaatcaa ccagtcaacc ggggcatttt caggaactgc aagtgagacc
     5221 tttaataccg tcggtgtcta ttcaagaagt ttgatattta cggattcctt tggaaatgca
     5281 acacagcttc agaacttcaa agtctgggtg atggatgcga cagctaacac gtccttgtta
     5341 aaccgtcttt ataaaaatta cccgtctgaa caagatgtgc taaatgccgt tacggtatca
     5401 acgggtggaa gcactatcgg ctacacgaag acgttgacaa cggctatccc aaaaacagat
     5461 gggactgcaa cggttcgtgt cacgacagac caaggggtct ataaggatat cccagtccga
     5521 atcacctaca aaagcaacca aagaccgtct gttacgactg ttaaccagac gttggacaag
     5581 gctgataagg cagctaccat tgacttgaca agggatgttg aggtcatcga cccagaagat
     5641 ggttcgtcaa atgcaggcaa ggcaaactcg ccatttatca gtcagattga aattaccgat
     5701 tcagaaggca atcttctctc tacgctgacg gataaggcgg gcatgcagaa ctttagcacg
     5761 gccaatctaa atgtgggcga gacataccgc gtaagagtaa caggtagtga tatcgaaggg
     5821 ctaacaaata cccacgaata cgttctgaac gttgtggata cgaccccaac cgtcactgtt
     5881 aactccgggt atgaaaacgg tacaggtgcg gtttattatg tgtttaacaa taccgagtta
     5941 aacaaagccc ttgaaccagt aacggttcgt gatgacaaag gggttacctc tattacagtg
     6001 gatgcaattg gcaatggtag tacgcatatc ccgccaacag gcttgacctt tgacattact
     6061 tcaggagcta ctgaaagcac ggttcgagtc acagggaaac acaatgctgg aacagcaaat
     6121 ggcgcaggga ttgttacacg tgaacttcat gcctatgatg cagacggaca cgtttcagaa
     6181 gccttcacac catttacact tcaaatctta aatgtatccg atgtgaccaa agcagttctt
     6241 gagaaacctt cagcaacaga gattgaaaac tgggtaaaag ctacagctgt cggcagtagc
     6301 agtacagttt tgcaggatgc tggactgacc tatgctgttg tgggaacgat tccagacacc
     6361 tctggtactg tcaacgtcaa ggtaacgact agacaaggga ttgaaaaaac agttactgta
     6421 accctgaatt acctgacgac ttctgttggt gccatcacag ttgattcagt aacaccaatt
     6481 accgaacaga tggtgaaaga ccaagtcacg gtaagtaacg gaaccgctac aacagcagtt
     6541 gcccaagatg cgcaaggcaa tccaatctta acggtgacaa gcacggatcc gacgaccaac
     6601 acaaagcgcg gaacaattcg cgtgacggta acaactaccg atggatttag caaagacgtc
     6661 gaggttccag ttactgtaac aaatacggca ccgacgattg caacgcaaga tgctacgatt
     6721 acgcgacaac catctggaac atcaacaaga attgacttga aagattacat caccattacg
     6781 gactcagaag atgataagag tgcaacggat acttacacaa cggctatcca agtcgtgatt
     6841 acaaatcctg ctacaggata ttcacagacg attaaggcga aaaatggtga ttctttacct
     6901 gttgatttga caaatctccc agcgggaact tatactgttt cagtcacagc taccgattcg
     6961 actggagcgg taaaaacagc caccagctct atcacattgc aggaaaatac agcaccgaat
     7021 gtaaccgttt ctgatcagac tattgaccgt ggtggaaaaa caacgattga catctctact
     7081 ggtgttacag ttacagatac agaagatgac agagatccaa atgatagtct tacaaccact
     7141 gttacttata cggtaaaaga ttcaaaaggt agtattgttt atcaaggaag ccagccgaat
     7201 gtcccagtag agacattagt agcaggaatc tatacggtaa ctgtagcagc gacagatgcc
     7261 cacggtgcta agactgagaa aacgtatacc ttaaaggtta ctgacaggaa ttctgagtct
     7321 gcctcagcct cagcctcagt atcagccagc gagtccgcca acacaagtgc ttcaaccagc
     7381 gcaagtacgt ccgcatcgac gtctgcaagc acgtccgcat cgacgtctgc aagcacgtcc
     7441 gcatcgacgt ctgcaagcac gtccgcatca acgagtgcaa gtacatccgc ctcaactagc
     7501 gcaagtactt ccgtgtcaac cagcgcaagt acaagtgcat caactagcgc aagtacaagt
     7561 gcttcaacgt cagcaagtac gtcagcctca accagcgcga gcacgtcagc ttcaacgtct
     7621 gcaagcacgt cagcttcaac aagtgcaagt acgtccgcat cgacgtctgc aagcacgtcc
     7681 gcatcaacga gtgcaagtac atccgcatca accagcgcaa gcacgtccgc atcgacgtca
     7741 gcaagcacgt cagcatcaac aagtgcaagc acttccgcat cgactatcgc aagcacgtca
     7801 gcttcaacca gcgcaagcac aagtgcctca acgtcagcca gcacgtccgc atcaacgtca
     7861 gcaagtacgt cagcttcaac cagcgcaagc acaagtgcct ctacatcggc aagtacgtca
     7921 gcctcaacgt cagcaagtac atcagcgtca accagcgcaa gcacaagtgc ttcaaccagc
     7981 gcaagtacaa gtgcctcaac aagtgcaagt acatccgcat cgacaagcgc aagcacatcg
     8041 gcctcaacaa gtgcaagtac gtccgcatca accagcgcaa gcacatccgc ttcaatgagt
     8101 gcaagtacgt ctgcttcaac cagcgcaagt acgtctgctt caaccagcgc cagcacaagt
     8161 gcctcaacgt cagcaagtac atcggcctca acgagtgcaa gcacaagtgc ctcaacaagt
     8221 gcaagtacgt cagcatcgac atcagcaagt acaagtgcct caactagcgc aagtacgtcg
     8281 gcctcaacaa gtgcaagcac gtccgcatca accagcgcca gcacaagtgc ctcaacgtca
     8341 gcaagtactt cagcgtcaac cagcgcaagt acaagtgctt caaccagcgc aagtacatcc
     8401 gcatcaacgt cggcaagtac atccgcttca acatcggcaa gcacaagtgc atcaacgtca
     8461 gcaagtacat cggcctcaac gtcagccagc acgtcagctt caaccagcgc aagtacaagt
     8521 gcttcaacgt cagcaagtac gtcagcgtca accagcgcaa gtacaagtgc ctcaacgtca
     8581 gccagcacgt ccgcttcaat gagtgcaagt acatccgcct caacgtcagc cagcacgtct
     8641 gcctcgacaa gtgcaagtac aagtgcctca acatcggcaa gcacgtctgc ttcaaccagc
     8701 gcaagcacaa gtgcttcaac atcggcaagt acgtctgcct caactagcgc cagcacgtca
     8761 gcttcaacat cggcaagtac aagtgcttca accagcgcca gcacgtccgc atcgacaagc
     8821 gcaagtacat ccgcttcaac cagcgcaagt acaagtgcct caacgtcagc aagtacgtca
     8881 gcgtcaacca gcgcaagtac gtctgcatcg acaagtgcaa gtacgtccgc atcaacgtca
     8941 gcaagtacaa gtgcttcaac cagcgcaagt acatccgctt cgacaagcgc aagtacaagt
     9001 gcctcaacat cggcaagcac gtccgcatcg accagcgcaa gtacaagtgc ctcaacgtca
     9061 gcaagtacgt ctgcatcgac aagtgcaagt acgtccgcat cgacaagcgc aagtacatcc
     9121 gcatcaacat cggcaagtac aagtgcatca acgtcagcaa gtacgtccgc atcgacaagt
     9181 gcaagcacgt cagcttcaac cagcgcaagt acatccgcct caacatcggc aagtacaagt
     9241 gcctcaacat cggcaagtac gtccgcctca acatcggcaa gtacatccgc ttcaacgtca
     9301 gcaagtacgt ccgcatcgac tagcgcaagt acgtctgcct cgacaagtgc aagtacatcc
     9361 gcctcaacgt cagcg
//
LOCUS       DASGAC010000080         9119 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.080, whole genome shotgun sequence.
ACCESSION   DASGAC010000080 DASGAC010000000
VERSION     DASGAC010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9119
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.080"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            102..356
                     /locus_tag="U1335_001372"
     CDS             102..356
                     /locus_tag="U1335_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014334382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1912 family protein"
                     /protein_id="HEM5231839.1"
                     /translation="MTKEQEFLKEFEAWVNTQVMVNEMAVEESRRVLEEDKDERAADA
                     YIRYESKLDAYRFIQGKFANYHAGKGFHDLPDELFGQRHY"
     gene            371..757
                     /locus_tag="U1335_001373"
     CDS             371..757
                     /locus_tag="U1335_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEM5231840.1"
                     /translation="MAKKKVNRKKQLKKQLADLKRAGRVGLERAAEVVETVAHKAEAV
                     VDHAVEQVKEVVAEVTSSATSLEDFLALPELEGIAAARLETFYEAGIKSVSDFANYTE
                     KELLALKGIGPATIKQLKEKGIEFKA"
     gene            963..2027
                     /locus_tag="U1335_001374"
     CDS             963..2027
                     /locus_tag="U1335_001374"
                     /inference="COORDINATES: protein motif:HMM:NF025873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEM5231841.1"
                     /translation="MRKALELTRGFFVTDDEFYIDELRELLYSAGSKDVETEWFDEIM
                     EISQKKHRIRELKKLLATYPNYLEAKFQFLLETGDGVIDRAYLEKMLVIQDEIVEQWA
                     ELDYSDWFSIEARSVLQMLAFLTEVYLLNGFSNLALKLVELLRSKIEEGFPPGYFHTM
                     LATYLHLYQFDEMESLYQWSLEKNWEDDGVLVYQIMAQLLQGKFTKAEELFKRLADLN
                     SKAVEAFQSDSWLDFVTVSTQLSYYKPYTVHSIYIALNAAIMFLETKPYLVEGMVALA
                     ESYANTLPNSPKKFRKFLEEPFLEGIGHSRAINLFYGGIHSKADFKKKTEQEILSIKG
                     IGPGTIKKLKENGVVFKKEK"
     gene            2263..2739
                     /locus_tag="U1335_001375"
     CDS             2263..2739
                     /locus_tag="U1335_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5231842.1"
                     /translation="MLHHVEIYVSDLETSRAFYDFLLTKLGYSLYQEWEGGFSMALYD
                     SKSLATKESLEPLMQFEQSENSSPMSRPEQYLVFVQTPEDFLEVGYHRCRTGLNHLAF
                     HAGTPDDVDQWRKEFLTRRVKLLYDDRYPHAGGSDHYALYLEDSDGIKIELVGEGV"
     gene            2736..3311
                     /locus_tag="U1335_001376"
     CDS             2736..3311
                     /locus_tag="U1335_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEM5231843.1"
                     /translation="MNLIIIGAQASGKMTIGQEVAKLTGMTLFHNHDSIDFSLRFIPE
                     FSEDMFDLNTRITFAVYDVFARSGRPLIGTTLINFKNLIEVQFLTTVQMIFHHHGQEI
                     LFVELETALEERLRRNRTENRLTHKPLKRHIEVSEAEILSTADTCQYTSLGIPEGIQH
                     YLKINNTHLTANEVAQLIIQKMEELEQEQMK"
     gene            3428..6079
                     /locus_tag="U1335_001377"
     CDS             3428..6079
                     /locus_tag="U1335_001377"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014623308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEM5231844.1"
                     /translation="MSKELSPKYNPAEVEAGRYQTWLDQDVFKPSGDVEAKPYSIVIP
                     PPNVTGKLHLGHAWDTTLQDIIIRQKRMQGFDTLWLPGMDHAGIATQAKVEERLREQG
                     VTRYDLGREKFLDKVWEWKDEYAATIREQWGKLGLSLDYQRDRFTLDEGLSKAVRKVF
                     VELYKKGWIYRGEFIINWDPAARTALSDIEVIHKDVEGAFYHMNYMLEDGSRALQVAT
                     TRPETMFGDVAVAVNPEDPRYKDLIGKNVILPIVNKPIPIVADEHADPEFGTGVVKIT
                     PAHDPNDFLVGQRHNLPQVNVMNDDGTMNELAGEFAGMDRFEARKATVAKLQELGDLV
                     EIENRVHSVGHSERTGVVVEPRLSTQWFVKMDQLAKNAIANQDTADKVEFYPPRFNDT
                     FLQWMENVHDWVISRQLWWGHQIPAWYNESGEMYVGEEAPAGDGWVQDEDVLDTWFSS
                     ALWPFSTMGWPDENAADFQRYFPTSTLVTGYDIIFFWVSRMIFQSLEFTGRQPFKNVL
                     IHGLIRDEEGRKMSKSLGNGIDPMDVIEKYGADALRWFLSNGSAPGQDVRFSYEKMDA
                     SWNFINKIWNISRYILMNNEGLTLDAARDNVAKVVAGEAGNVTDRWILHNLNETIAKV
                     TENFDKFEFGVAGHILYNFIWEEFANWYVELTKEVLYSDNEAEKVMTRSVLLYTLDQI
                     LRLLHPIMPFVTEEIFAQYAEGSIVVAAYPVVNPAFENAEAHKGVESLKDLIRSVRNS
                     RAEVNVAPSKPITILIKTADSKLETFFKANENYICRFTNPEQLEISSSIAAPELAMSA
                     VITGAEIFLPLADLLNVEEELARLDKELAKWQKELDMVGKKLSNERFIANAKPEVVEK
                     EKEKQADYQAKYDATVGRIEEMKKLVK"
     gene            6162..6920
                     /locus_tag="U1335_001378"
     CDS             6162..6920
                     /locus_tag="U1335_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000033780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3883 domain-containing protein"
                     /protein_id="HEM5231845.1"
                     /translation="MSKHKYYHLLNLIGYGLAKFDIQLIKQFGFNTKTDFYQYFVQLG
                     LAETTGVVKQRMDLFDPYFENGRRGWWQKKDVYEHRKLFIDSLFGNADVKEFADILKM
                     SLKEEGFLKGILVAPVPIVQTRFRKLQETGLEAEQYFLQHFQSVPLFKAGRIEDARLY
                     GDGYDFQIKTADRVFLSEVKGIRENRGRFRMTEKEFLKAKEFPNQFVLSLVLNLDNIP
                     RIMIIENPLKELDFREKIVQSKAVKEYHVLEDVY"
     gene            6935..7993
                     /locus_tag="U1335_001379"
     CDS             6935..7993
                     /locus_tag="U1335_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HEM5231846.1"
                     /translation="MNKSNSYQINLPSLIPFGFILSNNRYTYREVFMEGQFEAVVEVD
                     GAGQLSSYVWDCEMEEVYTAHLVTAPAGAFVGQVRKAYQSILDRVEEACCVALPFSKD
                     QSNRLAQLIKEQWGDLPDYPFAKLPTYGAFRHPNNNKWYALVSQISKGKLDGSADQEL
                     VEIVNLKVDGREIAELLSQSGIYSAYHMSKKTWVSVLLDDTVEDQTVFALLEKSRHLV
                     GPKSYKVAQGPDYWVIPANPKVYDIDTEFAENKVVYWPQKSTIQAGDIVAIYVTAPVQ
                     AIRYVCRVLGANLENHGESDIPTEKKLMQVELLAQFSDDVLPRSRMMDLGVRAVRGPR
                     RLTEGVIEVLSAEVKHLY"
     gene            8078..9070
                     /locus_tag="U1335_001380"
     CDS             8078..9070
                     /locus_tag="U1335_001380"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016502595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HEM5231847.1"
                     /translation="MKKSFIHQQEEISFVKNTFTQYLKDKLEIVEVQGPILSRVGDGM
                     QDNLSGVENAVTVNVKLIPDATYEVVHSLAKWKRHTLARFGFHEGEGLFVHMKALRPD
                     EDSLDPIHSVYVDQWDWEKVIPDGRRNLAYLKETVEQIYKAIRLTELAVEARYDIESV
                     LPKKITFIHTEELVKNFPDLTPKERENVVAKEYGAVFLIGIGGELADGKPHDGRAPDY
                     DDWTSPSEAGYKGLNGDILVWNETLGSAFELSSMGIRVDEEALKRQVAITGDEDRLEF
                     DWHRALLNGLFPLSIGGGIGQSRLAMFLLRKKHIGEVQSSVWPQEVRDSFENIL"
BASE COUNT         2704 a         1731 c         2231 g         2453 t
ORIGIN      
        1 agggagggaa ttggctctaa ctcaggagtt agggcttttc ttttgccaaa aatgtggtat
       61 aataagtcag tatgcttatt caagcacaaa agaggaatcc tatgacaaaa gaacaagaat
      121 ttttaaaaga atttgaggcc tgggtcaaca ctcaggtcat ggtaaacgag atggcggttg
      181 aagaaagtcg tcgtgtcttg gaagaagaca aggatgagcg ggcagcggat gcctatattc
      241 gctatgagag caagctggat gcctatcgat tcattcaagg gaaatttgcc aactaccatg
      301 ctggcaaagg ttttcatgat ttaccagatg agttgtttgg tcaaaggcat tattaaggag
      361 aggagttaac atggcaaaga aaaaagtaaa tcgaaaaaaa caattgaaaa aacagttggc
      421 agacttgaaa cgtgcaggcc gtgtaggtct tgaaagagct gcagaggtag tagagacagt
      481 tgctcacaag gctgaggctg tagtagatca tgctgtggaa caagtgaaag aagttgtagc
      541 agaagtgact tcttcagcga cttcattgga agactttttg gcgcttcctg agttggaagg
      601 cattgcggca gcacgtttgg aaacctttta tgaagcaggt atcaaatctg tgtctgactt
      661 tgcaaactat accgagaaag agctattggc acttaaaggt atcgggcctg caactatcaa
      721 gcagttgaaa gaaaaaggga ttgagtttaa agcttaaatg tgacctaaaa ccaactgaat
      781 agagttggtt tttttcgttc ttcttgctat aatggaatta gaaaattcaa ggagaaaact
      841 caatggcaaa gaagaaaaat cggaagaaag aaatgagaca cgctaaacat aatggagata
      901 atattataca gtttagtgat ttttaatctc ctaattctct caatcaattg tcgcaaacag
      961 atatgcgtaa agcattggag ttgactagag gattttttgt aacagatgat gagttttata
     1021 ttgatgaact aagggagctg ttgtattcgg caggaagtaa ggatgtggaa acagagtggt
     1081 tcgatgagat tatggaaata tcccagaaaa agcaccgcat tcgagagtta aaaaaactgc
     1141 ttgcaactta tcctaattat ctggaggcaa aatttcaatt tttgttggaa actggggatg
     1201 gagtgattga tcgagcatac ttagagaaaa tgctggtgat acaagatgaa atagttgaac
     1261 aatgggcaga actagattat tccgattggt tttccattga ggctaggtca gtcttgcaaa
     1321 tgcttgcctt tttaacagaa gtttacctgc tcaacggttt ttcaaattta gcattaaaac
     1381 ttgttgaact tcttcgttct aaaattgagg aaggctttcc accgggctat tttcatacca
     1441 tgttagccac ctatcttcat ttgtatcaat ttgatgaaat ggaaagtctt tatcagtggt
     1501 cacttgagaa gaactgggag gacgatggcg ttttggttta tcagattatg gcccagttat
     1561 tacaaggaaa atttacaaag gcggaagagt tgtttaagcg cttagctgac ttaaatagca
     1621 aagcggttga ggcctttcaa tcagacagtt ggctggattt tgtgactgta tccacgcaac
     1681 tatcttatta caaaccatac acggttcact ctatctatat cgctttaaat gccgcaatca
     1741 tgtttttaga aacaaaacca tatctagttg aaggtatggt tgccttggcg gaatcctatg
     1801 cgaatacatt gccaaattct cctaagaaat ttagaaaatt tttggaagaa ccatttttag
     1861 aagggatagg acattcaaga gcaataaatc tcttttatgg agggatacat agcaaggctg
     1921 attttaagaa aaagacagag caggaaatat tgtccataaa aggaatcggt ccaggaacaa
     1981 tcaaaaaatt aaaggaaaat ggtgttgttt tcaaaaaaga gaaataattg ctttttccta
     2041 aacattttga tagaataaag ccattcagag gtgttttgat ctccatttgt cacaggaagc
     2101 ggtggtactg agaaatccgc acaaatgtca aaactggttg ctgatgatgt gaatcgaata
     2161 agtaaagtgc agataatcta tctgaacaag ggtggtaccg cggaataact tcgtccctgt
     2221 ctagcaagtc taggcaggga ttttcatttg gaaaggagaa agatgctaca tcatgttgaa
     2281 atttacgttt ctgatttgga aacttcgcgt gcgttttacg actttctcct gaccaagctg
     2341 ggctactcgc tctatcagga gtgggaaggg ggattttcta tggctcttta tgactccaag
     2401 tcgctagcga cgaaggagag tttagagcca ttgatgcagt ttgagcaaag cgaaaacagt
     2461 agtcctatgt caagaccaga gcagtacctg gtctttgtcc aaacgccaga ggacttccta
     2521 gaggtaggct atcaccgttg ccgtacaggt ctcaatcatc tagcctttca tgcgggaaca
     2581 cctgatgatg ttgaccaatg gcggaaggaa tttttgacca gacgagtcaa actgctctac
     2641 gacgaccgct atccccatgc aggaggatca gatcactatg ccctctattt ggaagactcg
     2701 gacgggatta agatagagtt ggtgggggag ggagtatgaa tctaattatt attggagcac
     2761 aagcttctgg caagatgacc attgggcagg aagttgcgaa attgacagga atgaccctct
     2821 ttcataatca cgattcgatt gattttagcc tacgttttat tcctgaattt tctgaggata
     2881 tgtttgacct caatacacgt attacatttg ctgtttatga tgtgtttgct aggtcaggcc
     2941 gcccactaat cggaactacc ttgattaatt ttaaaaatct catagaggtt caattcctta
     3001 caactgttca gatgattttt catcatcatg gtcaggaaat tttatttgtt gagttggaaa
     3061 ctgctttgga agaacgtctg cgacgtaatc ggacagaaaa tcgacttacc cataaacctt
     3121 tgaaacgaca cattgaagtt tcagaggctg agattctctc tacagctgat acatgtcaat
     3181 atacctcatt aggcattcca gagggcattc agcattatct caaaattaat aatacccacc
     3241 ttactgctaa tgaagttgct caactgatta tccaaaaaat ggaggagctt gagcaagaac
     3301 aaatgaaata gccagcccaa ggactgacta tttctaggag attatatgaa aaagaaaagt
     3361 tttgctattt ctagcttgag gatagtataa accaattttc ttaaagaata ctaaaggaga
     3421 aaaactaatg tcaaaagaat tatcgccaaa atacaatcca gccgaggttg aggctggtcg
     3481 ttaccagact tggttggacc aagatgtctt taagccgtca ggcgatgtgg aggctaagcc
     3541 ttattcaatc gtgattccgc cgccaaacgt aactggtaag ttgcacttgg gacacgcttg
     3601 ggatactacc cttcaagata ttatcatccg tcaaaaacgc atgcagggct ttgataccct
     3661 ctggcttcca ggtatggacc acgcggggat tgcgactcag gctaaggttg aggaacgctt
     3721 gcgggagcaa ggcgtgaccc gttatgactt ggggcgtgaa aaattcctcg ataaagtttg
     3781 ggaatggaag gatgagtacg cagcgacaat tcgtgagcaa tggggcaagt tgggtctgtc
     3841 tttggactac caacgtgacc gcttcacgct agatgaaggc ttgtcaaaag ctgttcgcaa
     3901 ggtctttgtt gaactctaca aaaaaggatg gatctaccgt ggtgaattta tcatcaactg
     3961 ggacccagca gctcgcacag ccctttctga catcgaggtt attcacaagg acgtcgaagg
     4021 tgccttctac catatgaatt acatgttgga agacggctct cgtgcccttc aagttgcgac
     4081 aacccgtcct gaaaccatgt tcggtgacgt tgcggtggcg gtcaacccag aagacccacg
     4141 ttacaaggac ttgattggta aaaatgttat cctgccaatc gtcaacaagc ctatcccaat
     4201 cgttgccgat gagcacgcgg atcctgaatt tggtacgggg gttgtgaaaa tcacacctgc
     4261 ccacgatcca aatgacttcc ttgtcggtca acgccacaat ctgccacaag tcaatgttat
     4321 gaacgacgac ggtactatga acgagttggc aggcgaattt gcaggtatgg accgctttga
     4381 agcccgtaag gcaacggttg ctaagttgca agaactgggt gaccttgttg aaatcgaaaa
     4441 ccgtgtgcat tcagtcggtc actctgagcg tacaggtgtg gtagtcgagc cacgcttgtc
     4501 aacccagtgg tttgttaaaa tggaccaatt ggctaagaat gccattgcca accaagacac
     4561 agctgataag gtagaatttt acccaccacg tttcaacgat actttccttc aatggatgga
     4621 aaatgtacac gactgggtga tttcgcgtca gctttggtgg ggtcatcaga ttccagcatg
     4681 gtataacgaa tctggcgaaa tgtacgtcgg agaagaggct ccagcaggtg acggttgggt
     4741 acaggatgag gatgtcctag atacctggtt cagctctgcc ctttggccat tctcaaccat
     4801 gggatggcct gacgaaaatg cggcggactt ccagcgttac ttcccaactt caaccttggt
     4861 aacaggctac gacatcatct tcttctgggt gtcacgcatg attttccaat cacttgagtt
     4921 cacaggtcgt cagccattca agaacgtgct gatccacggt ttgatccgtg acgaagaagg
     4981 tcgcaagatg tccaagtcgc tcggaaacgg gattgatcca atggatgtca tcgagaaata
     5041 cggtgcggac gctttgcgtt ggttcttgtc aaacggctct gcccctggtc aagatgttcg
     5101 tttctcttat gagaagatgg acgcttcttg gaatttcatc aacaagattt ggaacatttc
     5161 tcgctatatc ctcatgaaca atgaaggctt gaccttggat gcggcgcgtg acaatgtcgc
     5221 caaagtcgta gctggtgagg ctggtaacgt gacggaccgc tggattctcc ataacctcaa
     5281 cgaaaccatt gccaaggtca ctgaaaactt cgacaagttc gagtttggtg tggctggtca
     5341 tattctctac aacttcatct gggaagagtt cgccaactgg tatgtggagc tgaccaagga
     5401 ggtgctttac agcgacaacg aggctgagaa agtcatgaca cgctctgtcc ttctctacac
     5461 gctggaccaa atccttcgcc tcctccaccc tatcatgccg tttgtgacgg aagagatctt
     5521 cgctcagtac gcagagggct ctatcgtggt ggcagcttac cctgttgtca acccagcctt
     5581 tgaaaacgct gaagcccaca agggagtgga aagcctcaag gacttgatcc gttcggtgcg
     5641 aaatagcaga gcagaggtca atgttgcgcc atctaagccg attaccattt tgattaagac
     5701 ggcagatagc aagcttgaaa ccttcttcaa ggcaaatgaa aactacatct gccgctttac
     5761 aaatccagaa cagttggaaa tcagctcaag catcgctgca ccagaactag ccatgtcagc
     5821 cgtcatcacc ggtgctgaaa tcttcttgcc actagcagac cttcttaacg tcgaagaaga
     5881 gttggctcga ctagacaaag aacttgccaa atggcagaaa gaactagaca tggtcggcaa
     5941 aaaactcagc aacgaacgct tcatcgccaa cgccaaacca gaagtcgttg aaaaagaaaa
     6001 agaaaaacaa gccgactacc aagcaaaata tgatgcgaca gtaggacgga ttgaagagat
     6061 gaaaaaactt gttaagtagg tagaatacga taaaatgccc agcctaaaaa ggctgggttt
     6121 tgtggtataa tggggataat aaattggaac aggtataagt tatgagtaag cacaaatatt
     6181 accatctatt aaatttaatt ggctatggtc tggctaaatt tgatatccag ttaatcaagc
     6241 aatttggttt taatacaaag acggattttt atcagtattt tgttcaactt ggcctagctg
     6301 aaacgacagg tgttgtcaag caacgtatgg atttatttga tccttatttt gagaatggtc
     6361 ggcgaggttg gtggcagaaa aaagatgttt atgagcatcg aaaattgttt atagatagtt
     6421 tgtttggaaa tgcagatgta aaagaatttg cagatatttt gaaaatgagt ttgaaagaag
     6481 aaggttttct aaaaggtatc ttagtagcac cagtaccaat tgttcaaacg cgatttcgga
     6541 aattgcagga aacaggttta gaagctgaac aatatttttt gcaacatttc cagtcagtgc
     6601 ctctgtttaa agcagggaga attgaggatg ctagattgta tggggatgga tatgattttc
     6661 aaatcaaaac agcagacagg gtatttttat ccgaagtaaa agggattcga gaaaacagag
     6721 gtcgtttcag aatgactgag aaagagtttt taaaagcgaa agaatttccc aatcaatttg
     6781 tcttgtctct ggtgttaaat ctggacaata ttcctagaat tatgataatc gaaaatccgt
     6841 tgaaagagtt agattttaga gaaaaaatag ttcaatcaaa agcagtgaaa gaataccatg
     6901 ttcttgagga tgtttattaa ggtaaggagg aactatgaac aaatcaaatt cctatcagat
     6961 caacctcccc tccctcatcc ctttcggttt tatcctctcc aacaatcgtt acacctatcg
     7021 tgaggtcttc atggaggggc agtttgaggc ggtggtggag gtggatgggg ctggtcagct
     7081 gtcgtcctat gtttgggatt gtgagatgga ggaggtctat accgcccatc tggtgactgc
     7141 gccagctggg gcttttgtgg gccaggtgcg taaggcttat cagtccattt tggatcgggt
     7201 agaggaagcc tgctgtgtcg ctctgccatt ttccaaagac caaagcaacc gtctagctca
     7261 gctcatcaag gagcagtggg gcgaccttcc tgactatccc tttgccaagt tgccgaccta
     7321 tggggcattt cgccatccca acaataacaa gtggtacgcc ttggtcagtc aaatatcgaa
     7381 gggaaagctg gatggtagtg cggaccaaga gttagtggag attgttaatc tcaaggtcga
     7441 cggtcgggaa atagcagagc tactaagcca gtcgggcatc tattcggctt accatatgtc
     7501 aaagaagact tgggtgtcgg tcttgctgga tgatacggtg gaggaccaga cggtgtttgc
     7561 cctccttgag aaaagtcgcc atctggtagg accgaaatcc tacaaggtgg cgcaagggcc
     7621 tgattactgg gttattccag ccaatccaaa ggtctatgat attgataccg aatttgcgga
     7681 aaataaggta gtctattggc cgcaaaaatc aaccattcaa gccggggaca tcgttgccat
     7741 ttatgttaca gcaccggtac aggctattcg ctatgtttgt cgtgtcttag gagcaaactt
     7801 ggaaaatcat ggagaatcag atattccgac agaaaagaaa ctcatgcagg tggaattgct
     7861 cgctcagttt tccgatgatg tgttgccgag atcgcgcatg atggacttgg gagtcagggc
     7921 ggtgcgtggt cctagacgct tgacagaggg cgtgatagaa gtgctatcag ccgaagtgaa
     7981 acacctctat taaattatca gaatatttaa taaaaagact ttacaagtag gcaaaaaaga
     8041 gtataataag gtgtataaat ttacgaggag gtaaggtatg aagaaaagct tcattcatca
     8101 gcaagaggag atttctttcg ttaaaaatac attcactcag tatttgaaag acaagctaga
     8161 aatcgtagaa gtgcaaggac cgattttgag tcgtgtcggg gatggtatgc aggataattt
     8221 gtccggtgtg gagaatgcgg ttactgttaa tgtgaagtta attccagatg cgacctatga
     8281 agtggttcac tcacttgcta agtggaagcg tcataccttg gctcgctttg gatttcacga
     8341 aggagaaggt ctttttgtac atatgaaagc cttgcgtcca gatgaggatt ccttggatcc
     8401 gattcactcg gtgtatgtgg atcagtggga ctgggaaaag gtcatccctg atggtcgtcg
     8461 caacttggct tatttgaagg aaacggtcga acaaatctat aaggccattc gattgacaga
     8521 gcttgcagtt gaagctcgtt atgatattga gtctgttctt cctaagaaaa tcacctttat
     8581 tcacacagag gaattggtga agaacttccc agacttgaca ccaaaagagc gtgaaaatgt
     8641 ggttgccaaa gaatacggtg cggttttcct aatcggtatt ggtggagaac tggcagatgg
     8701 taagccacat gacggacgtg ctccagacta tgatgactgg acaagcccat cagaagcagg
     8761 ctacaaagga ctcaatgggg acatcttggt ttggaatgag acgcttggtt cagcctttga
     8821 attgtcctca atgggaattc gtgtggatga agaagcgctg aagcgtcagg ttgctattac
     8881 aggtgacgag gaccgtttgg aatttgattg gcatcgtgcc cttttgaatg gactcttccc
     8941 actttcaatc ggtggcggta tcggtcaatc ccgtttggcc atgttcttgc tacgtaagaa
     9001 acacattgga gaagttcagt ccagtgtgtg gccacaggaa gtgcgagata gttttgaaaa
     9061 tattttgtaa gatgagtata taaaaaatga taggtttcaa aaaggaagcc tatcatttt
//
LOCUS       DASGAC010000081         9077 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.081, whole genome shotgun sequence.
ACCESSION   DASGAC010000081 DASGAC010000000
VERSION     DASGAC010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9077)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9077)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9077
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.081"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(39..1994)
                     /locus_tag="U1335_001381"
     CDS             complement(39..1994)
                     /locus_tag="U1335_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM5231848.1"
                     /translation="MKIQDVLRKDVMLLDLQATSKESVIDEMITSLVEKGYVTDFEVF
                     KTGIMNREAQTTTGLGDGIAMPHAKNAAVKEATVLFAKSNKGVDYASLDGQPTDLFFM
                     IAAPEGANDTHLAALAELSKYLMKAGFADRLRAATNPEEVIAVFDTAEAADKATEEVV
                     AAPSGDRPFIVAVTACTTGIAHTYMAEEALKKQAAEMGVDIKVETNGASGVGNKLTAE
                     DIKNAAGVIIAADKAVDMPRFNGKPLVSRPVAAGIKQPEELINIILNGKAAAYTASEG
                     AATVESSEKLSLGKAFYKHLMSGVSQMLPFVIGGGILIALAFLVDNLIGVPNDSLSNL
                     GSYNEIASMFMKVGQAAFGFMLPLLAGYIAYSIAEKPGLVAGFVAGAIASSGLAFGKI
                     PYAAGGEETLALAGVSSGFLGALVGGFLAGGVVLVLRNALRNLPKSLQGLNAILLLPL
                     LGTAITGFLMFFVNIPMAAINTGMNTFLAGLEGSSAILLGLVLGGMMAVDMGGPVNKA
                     AYVFGTGTLAATVADGGSVAMAAVMAGGMVPPLAIFVATLLFKNKFTQEERNSGLTNI
                     VMGLSFITEGAIPFGAADPARAIPSFIAGSALAGALVGLSGIQLMAPHGGIFVIALTS
                     NPLLYLAYVAIGAVVSGVLYGVLRKAK"
     gene            complement(1991..2902)
                     /gene="pfkB"
                     /locus_tag="U1335_001382"
     CDS             complement(1991..2902)
                     /gene="pfkB"
                     /locus_tag="U1335_001382"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019323947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HEM5231849.1"
                     /translation="MIYTVTLNPAIDYIVRLEHVETGSVNRMESDDKYAGGKGINVSR
                     VLKRLGYPNTATGFLGGFTGQFIKDGLIAEGIDTDFVQVDQDTRINVKIKADQETEIN
                     GLGPIVTDTQLAELEMVLAGLTKEDTVVFAGSAPASLGNEVYNRLIPVAKKAGAQVVC
                     DFEGQTLLDSLAHQPLLVKPNNHELEAIFNVELNGIADIETYAKKILEMGAQNVIISM
                     AGDGALLVTPAATYFAKPIKGTVKNSVGAGDSMVAGFTGEYVRSQDPIEALKWGVACG
                     TATAFSDDLASIEFIKETYEKVEVETL"
     gene            complement(2899..3648)
                     /locus_tag="U1335_001383"
     CDS             complement(2899..3648)
                     /locus_tag="U1335_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM5231850.1"
                     /translation="MDILKSERKQIILERIHSQQFVRLEELIEVLDTSESTVRRDLDE
                     LENEGKLRRVHGGAEAPAKLQLEESILEKSVKNVQEKRMIAERAAQLIMDGDVIFVDA
                     GTTTGVLIDYLQQENLTVVTNSIHHAVKLVERKIKTIIIGGFVKQSTDASVGAMALEQ
                     IRQLNFDKAFLGMNGIDKNYFTTPDIEEATIKRTIIDNAKESYVLADASKIGQFSFVK
                     VAAIEKSNIICQSSESSLLDIIKEKTRVIEV"
     gene            complement(3752..4807)
                     /locus_tag="U1335_001384"
     CDS             complement(3752..4807)
                     /locus_tag="U1335_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate aminotransferase family
                     protein"
                     /protein_id="HEM5231851.1"
                     /translation="MKRKVFEHYQPYKLGKIAKYDLGNNENRIIDWSFLPQKTLESLE
                     VGQLSFYGDNTYSELIEKYAAYLGVNPKQVTVGVGSDHLIHMIVSTFMEKDDTFLTVN
                     PDFFMYETYNHMHGSRFEAIDLEAKNDTLVLPVEKLLARAEEVKAKIIMLSNPNNPSS
                     VAYSLEDLEKLAISFKGLLVVDEAYIEFANVESFISRLPQFDNVLVLRTLSKAFGLAG
                     LRVGFAVGSEELIYELDKVIPPFSLSNLTAKMAAVALNYTDKVLETVEVIQNLREEMI
                     LFLQGLDNCQVLPSQASFVTFKATWAEEFYQQALAQDWNFKYYPTGKLEGHIRLSIGR
                     PEEMDMMKKMIEKLVEA"
     gene            complement(4838..5563)
                     /gene="trmD"
                     /locus_tag="U1335_001385"
     CDS             complement(4838..5563)
                     /gene="trmD"
                     /locus_tag="U1335_001385"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEM5231852.1"
                     /translation="MRIDILTLFPEMFAPLEHSIVGKARDKGLLEINYHNFRENAEKA
                     RHVDDEPYGGGQGMLLRAQPIFDTMDSIEQTKPRVILLDPAGRTFNQAYAEELAQEEQ
                     LIFICGHYEGYDERIKTLVTDEISLGDYVLTGGELAAMTMIDATVRLIPAVIGKEVSH
                     TDDSFSSGLLEYPQYTRPYEYRGMVVPDVLMSGHHENIRKWRLEESLRKTYQRRPDLL
                     ENYNFTAEELTIFEKIKAEDTVD"
     gene            complement(5553..6071)
                     /gene="rimM"
                     /locus_tag="U1335_001386"
     CDS             complement(5553..6071)
                     /gene="rimM"
                     /locus_tag="U1335_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016465641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HEM5231853.1"
                     /translation="MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAKLALFNDK
                     DQFVMEVEIASHRKAKNFDIIKFKGMYHINDIEKYKGFSLKIAEENLTDLEDGEFYYH
                     EIIGLDVYENDILIGQIKEILQPGANDVWVVKRKGKKDLLLPYIPPVVLNIDIPNNRV
                     DVELLEGLDDEN"
     gene            complement(6161..6541)
                     /locus_tag="U1335_001387"
     CDS             complement(6161..6541)
                     /locus_tag="U1335_001387"
                     /inference="COORDINATES: protein motif:HMM:NF028534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5301 domain-containing protein"
                     /protein_id="HEM5231854.1"
                     /translation="MKKKWLIGIFLSCICLLIAYQYVKKTEISFPQSDQIIISNQDSL
                     EIKTLESSEMSDFLSELSQIHPYLFKDASTNDQPVGVEEYYQLTFQPNGKIAYLYEKN
                     GKTYLEFPYELTVRTKKSLSEMID"
     gene            complement(6611..7948)
                     /locus_tag="U1335_001388"
     CDS             complement(6611..7948)
                     /locus_tag="U1335_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM5231855.1"
                     /translation="MYQTRNNKEKLWLFIKIFLPILIYQFANYSASFIDTMMTGQYST
                     MDLAGVSMATSLWNPLFSFLTGIVSALVPIIAQYLGKGERDKIREEFHQFVYLAIGLT
                     ILLLCSVIFIAIPALARFDLDEAVFQVGRQYLYFISIGILPLLLFSVCRSFFDALGLT
                     QLSMYLMLLLVPFNSLFNYLLIYGKMGLPALGGAGAGLGTALAYWAVLLVIVIVMCKN
                     KTISSYQIWRWSPIDLSLLKEGLKIGLPIGLQVFAEVAIFAVVGLYMAKFSAQIIAAH
                     QSAMNFATLLYAFPASVSSALAIVIAYEVGAKRPQDVKAYSRLGRLVALGFAGLTLTF
                     LYFFRSKVAYLYGNDAEFIRLTSHFLSFALMFQLADAFTAPIQGILRGYKDTTVPFIL
                     GLVAYWSMTFPVAFLLERFIQMGPEAYWIGLISGIFVCGIALRLRLQKIASSQ"
     gene            complement(8018..9001)
                     /gene="guaC"
                     /locus_tag="U1335_001389"
     CDS             complement(8018..9001)
                     /gene="guaC"
                     /locus_tag="U1335_001389"
                     /EC_number="1.7.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017769630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP reductase"
                     /protein_id="HEM5231856.1"
                     /translation="MFNETPVFDYEDIQLIPNKCIINSRSEADTTVTLGKYSFKLPVV
                     PANMQTIIDEDVAEMLAKDGYFYIMHRFDEEGRIPFVKRMHEQGLIASISVGVKEYEY
                     EFVTSLKADAPEFITIDIAHGHAESVIKMIQHIKKELPETFVIAGNVGTPEAVRELEN
                     AGADATKVGIGPGKVCITKVKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIA
                     KSIRFGASMVMIGSLFAGHIESPGKTVEVDGKQFKEYYGSASEYQKGAYKNVEGKKIL
                     LPAKGHLKDTLVEMEQDLQSSISYAGGRDITSLKHVDYVIVKNSIWNGDSI"
BASE COUNT         2678 a         2081 c         1706 g         2612 t
ORIGIN      
        1 agatgaaaaa acctcgtcaa atgacaaggt ttacaatctt atttagcttt acgaagtacg
       61 ccgtaaagaa cacctgatac tactgcacca attgctacat aagcaaggta aagaagtggg
      121 ttagaagtca aagcgataac gaagatacca ccgtgtggcg ccatcaattg gatgcccgac
      181 aaaccaacca aggcacctgc aagagcagaa ccagcgataa agcttgggat agcacgagct
      241 gggtcagcag caccgaatgg aattgcacct tcagtaatga atgaaagtcc cataacgatg
      301 tttgtcaaac ctgagttacg ctcttcttgc gtgaacttgt ttttgaacaa aagtgtcgct
      361 acaaagattg ccaacggagg aaccatacca ccggccataa ctgctgccat ggcaacagaa
      421 ccaccgtctg caacagttgc tgcaagtgta ccagtaccaa agacataagc cgccttgtta
      481 actggaccac ccatatcaac tgccatcata ccaccgagga caaggccaag gagaatagca
      541 gagctaccct caagacctgc aaggaaagtg ttcatacctg tgttgatagc tgccattgga
      601 atattgacaa agaacatcaa gaaaccagtg atagctgtac ctaaaagtgg caaaagcaag
      661 atagcgttca aaccttgaag tgattttggt aggttgcgca aagcgttgcg aagaacgagc
      721 actacaccac cggcaaggaa accaccaaca agggcaccca agaaaccaga tgatacacct
      781 gcaagagcaa gcgtttcttc accaccagct gcgtaaggaa tttttccgaa cgcaagaccg
      841 ctgctagcaa ttgcaccagc tacgaaacct gcaaccaaac ctggtttttc agcgatagag
      901 taagcaatat accctgcaag aagtggcaac atgaaaccga aggctgcctg accaaccttc
      961 atgaacatag aagctatttc attataagat cctaagttac taaggctgtc attcggcaca
     1021 ccaataaggt tatccactaa gaaagcaagg gcaatcaaga taccgccacc gataacgaat
     1081 ggcaacattt gagacacacc gctcatcaag tgtttataga aggctttacc aaggcttagt
     1141 ttttctgaag attccacagt agctgctcct tctgacgctg tgtaggctgc tgctttaccg
     1201 ttcaagatga tgttaatcaa ttcttctggt tgtttgatac cagctgcaac tggacgagat
     1261 accaatggtt tgccattgaa acgaggcata tcaacagcct tatctgctgc gatgattaca
     1321 cctgctgcat tcttaatgtc ttcagcggtt agtttgtttc caacacctga agcaccgttg
     1381 gtttcaacct tgatgtcaac acccatttca gccgcctgct tcttaagtgc ttcttccgcc
     1441 atgtatgtgt gagcaatacc tgttgtacat gctgtaacag caacgataaa tggacggtca
     1501 ccgcttggtg ctgcaactac ttcttcagtc gccttgtcag cggcctcagc tgtatcgaat
     1561 actgcaatca cttcttctgg atttgttgcc gcacgaagtc tatcagcaaa tccagctttc
     1621 atcaagtatt tagacaattc cgcaagggca gccaagtgtg tatcgttagc accttctgga
     1681 gctgcaatca tgaagaacaa gtcagttggt tgaccatcaa gacttgcgta gtcaacgccc
     1741 ttatttgatt ttgcaaagag aacagtcgct tcttttacag ccgcattctt agcgtgtggc
     1801 attgcgatac cgtcaccaag tcctgttgtc gtttgtgctt cacggttcat gatacctgtt
     1861 ttgaatactt caaaatctgt tacatatcct ttttctacca agctagtaat catttcatcg
     1921 atgactgatt ccttgcttgt cgcttgcaaa tcaagcaaca tgacatcttt tctcaaaacg
     1981 tcttgaattt tcatagtgtt tctacctcaa ctttttcata agtttcctta ataaattcga
     2041 tacttgccaa atcatctgaa aaggctgttg ccgtaccgca agcaactccc catttgaggg
     2101 cttcgattgg atcttgtgag cgaacgtatt cgccagtgaa tcctgccacc atggagtctc
     2161 cggctccgac agagtttttc actgttccct tgattggttt tgcaaagtaa gtagctgctg
     2221 gagtgaccaa caaagcacca tcaccagcca tagaaatgat aacattctga gcacccattt
     2281 ctaagatttt cttagcgtag gtctcgatgt ctgcaatgcc attcaattcg acattgaaga
     2341 ttgcttcaag ttcatggttg tttggcttga ccaatagtgg ttggtgtgct agtgagtcta
     2401 gaagtgtttg accttcaaag tcacagacta cttgcgctcc tgctttttta gcaacaggaa
     2461 tcagcctatt gtagacttca tttccaagac tagctggagc agacccagca aagacaacgg
     2521 tgtcttcttt ggtcaatcct gctaagacca tttctaattc ggccaactgt gtatctgtca
     2581 caatcggacc caaaccgttg atttctgttt cttggtcagc tttgattttc acgttaatac
     2641 gtgtatcttg atcaacctga acaaaatcag tatcaattcc ttcggcaatc aatccatctt
     2701 tgatgaactg acctgtgaat cccccaagga aacccgttgc tgtattcgga tagcccaagc
     2761 gcttcaaaac acggctaacg ttaattccct taccgccggc atacttatcg tcgctctcca
     2821 tacgattgac actgcccgtc tcgacatgtt ctaaacgaac gatatagtca atcgctggat
     2881 tgagcgtaac tgtataaatc atacctcgat taccctcgtt ttctctttta tgatatccaa
     2941 caaactgctt tctgaagatt ggcagataat gttggatttt tcgattgccg caactttaac
     3001 aaaggagaat tgaccaattt tagaagcatc tgccaaaaca tagctttctt tggcattgtc
     3061 tatgatagtg cgtttgatgg tcgcttcttc aatatctggc gttgtaaaat agtttttatc
     3121 aataccgttc atccccagaa atgccttatc aaaattgagc tgtcgaattt gttccaatgc
     3181 catcgcacct actgaagcat cggttgattg cttaacaaaa ccacctataa taatggtctt
     3241 tatcttgcgt tcaaccaact tgacagcatg gtgaatggaa ttggtcacga ctgttagatt
     3301 ttcctgttgg agatagtcaa tcaagacacc ggttgttgtc cctgcgtcta caaaaatcac
     3361 atcgccgtcc atgatcaact gagctgctct ttcggcaatc attcgttttt cttgaacgtt
     3421 tttgacagat ttttcaagaa tggattcttc cagttgcaat ttagctggtg cttctgcacc
     3481 gccgtgcact cttcgaagtt tcccttcatt ttctaactcg tccaaatccc tacgaacagt
     3541 agactcagat gtatcaagaa cttcgattaa ttcctctagc cgaacaaact gttgagagtg
     3601 tattcgctcc aatataatct gtttgcgttc tgatttgaga atgtccaaca cctcctgcaa
     3661 tcgtttacaa aaaacattat acacgatttt ctgtcattgt caatcatttt ctatcatttt
     3721 ctttcaaaaa aacaaaaaaa ctagcagaaa tctacgcttc cactagtttc tcaatcattt
     3781 ttttcatcat atccatttct tctggacggc caatagatag gcgaatatgc ccttctaatt
     3841 tacctgttgg ataatatttg aaattccaat cctgtgccaa ggcttgctga taaaattctt
     3901 ctgcccacgt tgctttaaac gttacaaaac tagcctgact aggtagaact tgacagttat
     3961 ctaacccttg caagaataaa atcatttctt ctcgcaaatt ctgaattact tccactgttt
     4021 ctaaaacctt atctgtataa ttcaatgcaa cggctgccat ttttgcagtc aagtttgaca
     4081 agctgaacgg gggaatgacc ttgtccaatt cataaattaa ctcttcgctt cctaccgcaa
     4141 agccaactcg taaacctgca agtccaaaag cctttgataa ggtccgtaaa actaaaacat
     4201 tgtcaaattg tggcagacga ctgatgaagc tttcgacatt tgcaaattca atgtaagcct
     4261 catctacaac gagtagtcct ttaaaagaaa tagccaattt ctccaaatct tctagtgaat
     4321 aagctactga agagggattg ttaggattgg aaagcataat tatctttgcc ttcacctcct
     4381 ccgcacgcgc caacaatttc tctactggca ggacgagtgt atcgtttttt gcttccaaat
     4441 caatggcttc aaaacggcta ccatgcatgt ggttataggt ttcatacatg aagaagtctg
     4501 gattgacagt caaaaaagta tcatcctttt ccataaaggt ggaaacaatc atgtgaataa
     4561 ggtgatcaga gcccacacct actgttactt gtttgggatt cactccaaga taggccgcat
     4621 atttctcaat caactctgag taagtattgt caccgtaaaa gcttaattga ccaacttcta
     4681 agctctctaa ggtcttttgc ggtaaaaagg accagtcaat aatacgattt tcattattgc
     4741 ccaagtcgta tttggcaatt tttcctaact tatagggttg gtaatgttca aataccttgc
     4801 gtttcatcat ttctccttct agcaagaaaa acacagtcta atcaactgtg tcttctgctt
     4861 tgattttttc aaaaatagtt aactcttcag ctgtaaagtt gtaattttcc aacaagtctg
     4921 gacgacgttg ataggttttg cgtagactct cttccaaacg ccatttacga atattttcat
     4981 ggtgaccact cattaataca tctggaacta ccattccacg atactcgtat ggtcgggtgt
     5041 attgaggata ttccaatagc cctgatgaaa aactatcatc cgtatgactg acttccttgc
     5101 caataaccgc tggaatcagg cgaacggtag catcaatcat ggtcatagct gccaactctc
     5161 cacctgtcag aacatagtct ccgagagaaa tctcgtctgt taccaaggtc ttaatccgct
     5221 catcatatcc ttcatagtga ccgcaaatga aaatcagctg ctcctcctgt gccaattctt
     5281 cggcataggc ctgattgaaa gtacgcccag cgggatccaa taggataaca cgtggcttgg
     5341 tttgttcaat gctatccata gtatcaaaaa ttggctgggc acggagcaac atgccttgtc
     5401 ctccaccata gggttcatcg tccacatggc gagccttttc agcattctct cggaaattgt
     5461 ggtagttgat ttccaacaag cccttgtcac gcgccttacc cacaatagag tgttctagag
     5521 gtgcaaacat ctcagggaag agggtcaaaa tatcaattct catcgtccaa gccctcgagc
     5581 aattccacat cgacacggtt atttggaata tcaatgttca agacaacggg tggaatatat
     5641 ggcaagagca ggtctttctt accttttcgt ttcaccaccc agacatcatt ggcacctggc
     5701 tgcaagattt ccttgatttg tccgatcaga atatcattct catagacatc caagccgata
     5761 atttcatggt aataaaactc accatcttca aggtcggtca aattttcctc ggcaattttc
     5821 aaactaaagc ccttgtactt ttcaatatcg ttgatatggt acatgccctt aaacttgata
     5881 atatcaaagt tcttagcctt acggtgacta gcaatttcca cttccatgac aaactgatcc
     5941 ttgtcattaa acaaggctag ctttgcccct tttttaaaac gttcttcagc aaaatcggtc
     6001 acagacaaaa cacgcatttc cccttgtagg ccttgcgtgt taacaatctt tcctacgtta
     6061 aaataattca taatttctcc atttgatttt ctatcctttt attttaacat gagcaagata
     6121 ttttcacaag agagaaaaag ccggatgcct ccgacttctt ctagtctatc atctcagaga
     6181 gggacttttt tgttctaact gtcaactcat aaggaaattc caaataggtc ttgccattct
     6241 tttcatagag ataggctatt tttccattag gctgaaaggt aagttgataa tactcttcta
     6301 ccccgactgg ctgatcattg gtgctagcat ctttgaaaag atagggatga atttgagaaa
     6361 gctctgacaa aaaatcgctc atttcgctac tttccaaagt ttttatctct aaactatctt
     6421 gattgctgat aataatctgg tcagattgag ggaaactgat ttcagttttc ttcacatact
     6481 gataagcaat taataagcag atacaagata aaaaaatacc aatcaaccat ttctttttca
     6541 taataaaacc cacccttttt tagtaaatta tatcaagctc agaaaatctg tcaagcaaaa
     6601 acatcgaaat ctattgactg ctagcaattt tctgcaaccg taatcttagg gcaatcccgc
     6661 agacaaaaat ccctgaaata agaccgatcc aataggcttc tggacccatt tggataaatc
     6721 tttcaagcaa gaatgcgact gggaaggtca tggaccaata ggcaaccaaa ccaagtataa
     6781 atggaacagt cgtatccttg taaccacgta aaatcccctg aataggtgct gtaaaggcat
     6841 ctgctaactg gaacatgaga gcaaagctca ggaaatgcga ggtcagacgg ataaattctg
     6901 cgtcattacc ataaaggtag gcaactttgg agcggaaaaa atataggaaa gtgagtgtta
     6961 ggcctgcaaa accaagtgca accaggcgtc ctagacggct gtaggctttc acatcctgtg
     7021 gtcgtttagc ccctacttca taagcaatga caatagctag ggctgaagaa actgaggcag
     7081 gaaaggcata taataatgtc gcaaagttca tagctgactg gtgggctgct ataatctggg
     7141 ctgaaaattt tgccatgtag agccctacta ctgcaaaaat tgctacttct gcaaagactt
     7201 gtaaaccaat cggcaaacca attttcaagc cttccttcaa taaagaaagg tcaatcggac
     7261 tccaccgcca aatctgataa gaagaaatag tcttattttt gcacatgaca atgacgatta
     7321 ctagcaatac cgcccagtaa gctaaagcag tacccaatcc agcacctgct ccgcccaggg
     7381 ccggtaggcc cattttccca taaattaaga gatagttaaa gaggctgtta aagggaacca
     7441 agagcaacat aaggtacatg gatagctgag tcaagccgag agcgtcgaaa aaagagcgac
     7501 agacactaaa gagcaagaga ggtaggatgc caatggaaat aaaatagagg tactgccgac
     7561 caacctgaaa gacagcttcg tccaagtcaa aacgtgcaag ggctggaata gctataaaaa
     7621 tgaccgagca caagagtaaa atggttagtc cgatagctag atagacaaac tgatgaaact
     7681 cctcacgaat cttatctctt tcaccttttc ctaaatattg agcgatgatt gggaccaatg
     7741 cagatacaat ccctgttaga aatgaaaaaa gcggattcca aagacttgtt gccatggaaa
     7801 cacctgccaa atccatagta ctatactgac cagtcatcat ggtatcgata aaagatgccg
     7861 agtaattagc aaattgataa attaaaatgg gcaaaaatat tttgataaag agccagagct
     7921 tctctttgtt atttcttgtt tggtacatac ttattctctt tcaattttat ataaatattg
     7981 taacaagaaa aggacctgca ttgcaagtcc tctttgacta gatagagtca ccattccaga
     8041 tagagttttt cacgataaca tagtccacat gcttcaagct ggtaatgtca cgtcctcctg
     8101 cataagaaat agatgactgc aaatcttgct ccatttcaac cagagtatct ttcaaatgtc
     8161 ctttggcagg gagtaagatt ttcttacctt ctacgttttt ataggcacct ttttggtatt
     8221 cagatgctga accgtagtat tctttaaact gtttgccgtc cacttctacg gtctttcctg
     8281 ggctttcgat gtgtccagca aagagcgaac caatcatgac catgcttgcg ccgaagcgga
     8341 tggatttggc aatgtctccg tgggtacgaa taccaccgtc cgcaataatt ggtttacggg
     8401 cagcttttgc acaccaacga agggctgcca gctgccaacc acctgtacca aaaccagtct
     8461 taacctttgt aatacatact ttacctggac caattccaac ttttgtcgca tccgccccag
     8521 cattttctag ttcacgaact gcttctggag taccgacatt acctgcaatg acgaacgtct
     8581 caggcagttc tttcttgata tgttgaatca tcttgataac actttctgca tggccatgag
     8641 caatatcaat ggtgataaac tcaggggcat cagctttcaa gctagtcaca aactcatatt
     8701 catattcttt tacgccaaca gagatagaag caatcaaccc ctgctcgtgc atgcgcttca
     8761 cgaaaggaat acgtccctct tcatcgaaac gatgcatgat gtagaaataa ccatctttgg
     8821 caagcatttc tgccacatct tcatcaataa tagtctgcat attagctgga acaactggta
     8881 atttaaagct atatttccca agagtcactg ttgtatctgc ctcggaacgg ctattgatga
     8941 tacatttgtt tggaatgagc tgaatatctt cgtagtcaaa aactggagtt tcgttgaaca
     9001 tgcttctacc tctttttctt aacattggaa cagaaaaacg gtttgttttt cgtatttttt
     9061 ccttattaca agatata
//
LOCUS       DASGAC010000082         9036 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.082, whole genome shotgun sequence.
ACCESSION   DASGAC010000082 DASGAC010000000
VERSION     DASGAC010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 9036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9036
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.082"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(846..1949)
                     /locus_tag="U1335_001390"
     CDS             complement(846..1949)
                     /locus_tag="U1335_001390"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011226530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEM5231857.1"
                     /translation="MIESEHRPTQIRVNLDAIAENFEQVMTNLPHKTEAFAVVKANAY
                     GHGAVAVAKKLSSQAAGFCVSNLDEALELRKAGIEHPILILGVVPVRFLPVAHQLNIS
                     VTVASLDWLQDAKDLGADLSGLTVHLKLDTGMGRIGFRKIADLLQAIAILEELEYDIE
                     GVYTHFATADEVDQAHFESQLSVFKEFLDVLPITPRWIHASNSATSIWHADTVFNLVR
                     LGNILYGLNPSGRVLELPFDVQPALSLVSEIVHVKQVETGATIGYGATYHSTDSEWIA
                     TVPIGYADGLVRSLQGLSVLVDGQACEIVGRISMDQITIRLPHAYPLGQKVTLIGQDG
                     DKTISVQEWADRIGTINYEVVCLLTDRLPRIFE"
     gene            complement(1942..2301)
                     /locus_tag="U1335_001391"
     CDS             complement(1942..2301)
                     /locus_tag="U1335_001391"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEM5231858.1"
                     /translation="MIVGHGIDLQEMEAIESARIKHQGFPKKILTEKEFERYQSLSGR
                     RQLEYLAGRWSAKEALTKALGTGIGKIGFHDIEILNTSKGVPYVTKSPFDGNIWLSIS
                     HSGNFVQASVILEEKDD"
     gene            complement(2416..4941)
                     /gene="secA"
                     /locus_tag="U1335_001392"
     CDS             complement(2416..4941)
                     /gene="secA"
                     /locus_tag="U1335_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEM5231859.1"
                     /translation="MVTNVLRSLIENDKGELRKLEKMADKVFSYADEMEALTDEQLQA
                     KTAEFKERYNNGESLDDLLYEAYAVVREGARRVLGLYPYKVQVMGGIVLHNGDVPEMR
                     TGEGKTLTATMPVYLNALSGQGVHVVTVNEYLSTRDATEMGELYSWLGLSVGINLAAK
                     SPLEKREAYNCDITYSTNSEIGFDYLRDNMVVRAEDMVQRPLNYALVDEVDSILIDEA
                     RTPLIVSGAQGSETNQLYFLADNLVKSLTTEDYIIDIPSKTIGLSDSGIDKAEKFFKL
                     DNLYDIENVAITHFLDNALRANYIMTYDIDYLVNEDQEVMIIDPFTGRTMEGRRYSDG
                     LHQAIEAKEGVPVQNESKTSASITYQNLFRMYKKLSGMTGTGKTEEEEFREIYNIRVV
                     PIPTNRPIARVDHEDLLYPSLEYKFNAVIADVKRRYEKGQPVLVGTVAVETSDLISQK
                     LVAAGVPHEVLNAKNHYREAQIIMNAGQRGAVTIATNMAGRGTDIKLGPGVRELGGLC
                     VIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDDLMKRFGSERIKVFMERMNLT
                     EEESVIKSKMLTRQVESAQKRVEGNNYDSRKQVLQYDDVMREQREIIYRQRQDVITAN
                     RDLAPEIKAMMKRTIERQVAGHFLGSKDEAIDGIIKFAHANLVDDDTLSKATFEAMNQ
                     KEIVEELYERALRVYDSQVKKLRDEERVREFQKVLILRVVDNKWTDHIDALDQLRNAV
                     SLRGYAQNNPIVEYQSEAFTMFNDMIGAIEFEVTRLMMKAQIHDNIERERTSQEAHTT
                     AVKNIMPNQSQAIQENVSFEGVDRNDPCPCQSGKKFKNCHGRK"
     gene            5284..5616
                     /locus_tag="U1335_001393"
     CDS             5284..5616
                     /locus_tag="U1335_001393"
                     /inference="COORDINATES: protein motif:HMM:NF012948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5231860.1"
                     /translation="MAYGEASLLYASTVSVQYQYIAQDELTSSEKDSVLSKLKTVSPS
                     KEIATENQTIYLIYKTEPKKIFGILPATGETGINLLTIGGGLLLVLGISLVGKGKKKG
                     SGKEVSHS"
     gene            5707..6060
                     /locus_tag="U1335_001394"
     CDS             5707..6060
                     /locus_tag="U1335_001394"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231861.1"
                     /translation="MASSKMTSLVPMADKAIISDIQGREGNINTLLAHFEDGSTLFFP
                     LQYTESKDKRAYYQVADWGVTYSPLQTLQDYSDILDKVVPSLQAVEFRSENMYTALSI
                     TENQEPDYRTSIFTE"
     gene            complement(6102..6983)
                     /locus_tag="U1335_001395"
     CDS             complement(6102..6983)
                     /locus_tag="U1335_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011227540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM5231862.1"
                     /translation="MTKLYGSLEAGGTKFVCAVGDENFQVVEKTQFPTTTPYETIERT
                     VEFFKRYEDRLAGIAIGSFGPIDIDQNSQTYGYITSTPKPHWSNIDLLGLIAKEFNIP
                     FYFTTDVNSSAFGETLVRKGVKSLVYYTIGTGIGAGAIQNGEFIGGLGHTEAGHTYVS
                     LHPYDVKHEFKGMCPFHNGCLEGLAAGPSLEGRTGIRGELIELNSDVWDVQAYYIAQA
                     AVQATLLYRPQVIVFGGGVMAQEHMLNRVREKFVGLMNDYLPTPDVKEYIVTPAVAEN
                     GSATLGNFALAKQVSEK"
     gene            complement(7111..9000)
                     /locus_tag="U1335_001396"
     CDS             complement(7111..9000)
                     /locus_tag="U1335_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM5231863.1"
                     /translation="MNNTEIAKKVIDALGGRENVRSVAHCATRLRVMVVDEGKIDKDT
                     VEDIEKVQGAFFNSGQYQIIFGTGTVNKIYDEVVALGLPTATTGEQKAEAAKQGNAFQ
                     RAIRTFGDVFVPIIPAIVATGLFMGLRGLFAALEMPLTGDLNTYSQILTDTAFIVLPA
                     LVVWSTFRVFGGNQTIGIVLGMMLIAGQLPNAWVVASGGDVKPLMFFGFIPVVGLQGS
                     VLPAFIIGLIGAKFEKAVRKVVPEVLDLLVTPFITLFVMSILGLFVIGPVFHVVENYI
                     LAATQAILNLPMGLGGLLIGGVHQVIVVSGVHHIFNFLEAQLVANTGANPFNAIITAA
                     MTAQGAATVAVGVKTKNPKLKALAFPAALSAFLGITEPAIFGVNLRFRKPFLLSLIAG
                     AIGGAFASILGLAGNGMGVTIIPGATLYVGNGQLFQYILMVVVSFALGFALTYLFGYE
                     DEEKEVKKPSASTQETAETLEEAETGLVAEETLVSPLSGDVVALENVNDPVFSSGAMG
                     KGLAVKPSEGVVYAPADAEVTIAFETGHAYGLKTASGAELLIHIGIDTVSMNGNGFEK
                     LVAAGDKVKAGTPIAKFDAAKIAEAGLDDTTMIIVTNTADFAEVSPLAEGTITHGVEF
                     LKVAK"
BASE COUNT         2707 a         2043 c         1725 g         2561 t
ORIGIN      
        1 ttttgatttt cattgagtat tggacttttt gaccagcctc atcaaaagcc gcaggcgtaa
       61 ctcaatgctt tcttatttct aggtgaccag ctgatgtact tcgctttttt gttttcaggc
      121 tcaggtacga atagtccact ggactattcg tatcccccag attgcttgca cagtcaatgg
      181 actgtgcaag gtgggagata atacttgcaa agcaagtcac ttttacaaaa tcaggcaagg
      241 cgagttcaaa caatccagtg gagtgtttga agttggaaat agggagtggg aaagaactcg
      301 accaagataa aaagagtccg tcaacaagtc tttatttcta gttgttgagc tgaaacagtc
      361 tatccccaga ctgtttcact cccacccccg cacagctcaa actgtctggg agacagtttg
      421 aggttggaaa tagagcgaac tttgttcgca acagtcgtaa tggccagatt tggagtgaaa
      481 aacacgaaca aatctgccaa tcaaccactg cgctgagatg ttgacacgaa ctctgagtag
      541 tggtcctgga ctttttgccc agactcatca acagccacag gcataactca atgctttctt
      601 atttctaggc actgacttga aacagtcctc tatactgttt caatcaggca aggcgagctc
      661 aaacaatcca gtggagtgtt tgaagttgga aataaggaaa cggagtttcc tcttacgtcg
      721 cagtaataaa agtcaactaa atgacgatat ttgtattata gacaatctct aggcaacgct
      781 tctctaatat tttagccttc tattctagtg aaagaggcgg attatcgtca cttttactat
      841 cgctgttatt caaaaattcg aggtaggcga tctgtcaaaa gacaaaccac ctcgtaattt
      901 atggttccga tgcgatcagc ccactcctga acagagatcg ttttatctcc atcttgaccg
      961 attagggtga ctttttgacc aagtggataa gcatgaggta aacgaatggt gatctggtcc
     1021 atcgaaatac gccctacaat ttcacaggcc tgcccatcaa ctaagactga taagccttgt
     1081 aagcttcgta cgagaccatc tgcatatcct atcggaacgg tcgcaatcca ttctgaatcg
     1141 gtgctgtgat aagtagctcc gtagccaatt gttgcgccag tttcaacctg ctttacatga
     1201 acaatttcag atacaagaga taaggctggt tgaacatcaa acgggagttc tagtactcgt
     1261 ccacttggat taagtccata aagaatgttt cccaaacgaa ccaggttaaa tactgtatca
     1321 gcatgccaaa tgcttgttgc tgaattgctg gcatgaatcc agcgcggagt aattggtaga
     1381 acatccaaaa attctttaaa aacagacagt tgactctcga agtgcgcctg atcaacctca
     1441 tccgcagtag caaaatgagt ataaactcct tcgatgtcat actctaattc ttcaaggata
     1501 gcaatcgctt gtagcaaatc ggctattttt ctaaaaccaa tccgccccat acctgtatct
     1561 agcttaagat gaacagttag accagataaa tccgccccta agtcttttgc atcttgcaac
     1621 cagtccagac tagcaactgt cacactgata ttgagttgat gagctactgg taaaaaacgt
     1681 acaggaacca ctcctaaaat caagatagga tgctcgatac ccgctttacg taactctaat
     1741 gcttcatcca aattcgaaac acaaaaacca gctgcttgac tggataactt tttcgctacc
     1801 gcaacagctc catgaccata agcattcgcc ttaacaacag caaatgcttc ggtcttatgg
     1861 ggcaagttgg tcattacttg ctcgaaattt tccgcaatcg catctaagtt aacccgaatt
     1921 tgcgtgggtc gatgttcact ttcaatcatc tttctcctcc aaaatcacac tagcttgtac
     1981 aaaatttcct gaatggctaa tgctgagcca aatattccca tcaaagggac tcttcgtcac
     2041 atagggaact cctttgctgg tattcagaat ttcaatatca tgaaatccta tcttaccaat
     2101 gcctgtcccc aaggccttgg tcagtgcttc tttggctgac caacgtcccg ctaaatattc
     2161 taactgacgg cgaccggaca gactttgata ccgttcaaat tctttctctg tgagaatctt
     2221 tttgggaaac ccttggtgtt tgattctggc actttcaatc gcctccatct cctgaaggtc
     2281 aatgccatgt cctactatca ttaatcggtc tccttttgca tagtcatttc atttattaaa
     2341 ataaacgaac tgactctagt gacttgtcta aaaattgcaa aaggactgga cagccgtcca
     2401 gtccacgcgt cattcctatt tacggccgtg acaattttta aatttcttac cagactggca
     2461 tgggcatgga tcgttacgat caacaccttc aaaagataca ttctcctgaa ttgcctgcga
     2521 ttggttcggc ataatattct taacagctgt cgtatgtgct tcttgacttg tacgctcacg
     2581 ctcaatattg tcatgaattt gcgccttcat catcaagcgg gttacttcaa actcgatagc
     2641 cccaatcata tcgttgaaca tagtaaatgc ttctgattga tattcaacga ttggattgtt
     2701 ttgagcgtat ccacgaagac tgactgcatt gcgcaattga tccaaggcat caatatggtc
     2761 tgtccatttg ttatccacaa cacgaaggat aagaactttc tggaattcgc gtacacgttc
     2821 ttcatcgcgt aattttttca cttgcgaatc atagactctc aaagcacgtt catagagctc
     2881 ttcgacaatc tctttctgat tcattgcttc aaaagtagct ttactcaagg tatcatcgtc
     2941 aacgagattt gcatgcgcaa atttgataat tccatcaata gcttcatctt tcgaaccaag
     3001 gaagtgacca gcaacttggc gttcaatcgt ccgtttcatc atcgctttga tttcaggagc
     3061 caaatcacgg ttagcagtaa taacatcctg gcgttggcga tagatgattt cacgttgctc
     3121 acgcatcaca tcgtcatatt gaaggacttg tttacgtgaa tcgtagttgt tcccttccac
     3181 acgcttctga gcagattcaa cttgacgtgt caacatttta gacttgataa cggactcttc
     3241 ttctgttaga ttcatacgct ccataaatac tttaatgcgt tctgaaccaa agcgtttcat
     3301 caagtcatct tcgagagata gatagaattg tgattcacct gggtcacctt gacgacctga
     3361 acgtccacga agctggttat caatacgacg actttcatgg cgctcagtac caataacaca
     3421 tagcccacca agttcacgta cacctggacc taacttaata tcggtaccgc gtcccgccat
     3481 gttggtcgca atagtgaccg caccacgctg accagcattc ataataatct gcgcttcacg
     3541 atagtggttt ttagcattca atacttcgtg agggacacct gcagctacca atttttgaga
     3601 aatcaaatca gaagtttcaa ccgcaactgt accgaccaag acaggttgcc ctttctcata
     3661 gcgtctcttc acatcagcaa taacggcatt gaatttgtat tctagacttg gatagagtaa
     3721 atcttcgtgg tcaacacgcg cgattgggcg gttggttggg attggtacaa cacggatgtt
     3781 gtagatttca cggaattctt cctcttctgt tttaccagta cccgtcatcc ctgataattt
     3841 tttatacata cggaaaaggt tttggtaggt aatagaggca cttgtcttag actcgttttg
     3901 aaccggtaca ccttccttag cttcgatggc ttggtgaagt ccatcagaat aacgacgacc
     3961 ctccatcgta cgacctgtaa atggatcaat aatcatgacc tcttggtctt cattaaccag
     4021 atagtcaata tcataggtca taatgtagtt ggcacgaagt gcattatcca agaaatgggt
     4081 aatggctaca ttttcaatat cgtataggtt atctaacttg aagaatttct ctgctttgtc
     4141 aatacctgaa tcagacagac caatcgtttt agatggaatg tcaatgatgt aatcttctgt
     4201 tgtcaaggat ttaacaagat tatctgccaa gaaatacaac tggtttgttt ccgaaccttg
     4261 tgcaccagat acaatcaacg gcgtacgagc ttcgtcaatc aagattgagt caacttcatc
     4321 gactaaggcg taattgagag gacgttgaac catgtcttct gcgcgcacaa ccatattgtc
     4381 tcggaggtag tcaaaaccaa tctctgagtt ggtcgaataa gtaatatcgc agttataggc
     4441 ctcacgtttt tccaagggtg atttagcagc taagttgata ccaactgata gaccaagcca
     4501 tgagtacaat tcacccattt cagtcgcatc acgagtagaa agatactcgt taaccgtcac
     4561 tacgtgaaca ccttgaccag acaaggcatt caaataaaca ggcatcgttg cagtcagagt
     4621 tttaccttca cctgtacgca tttctggaac gtcaccgttg tgaagaacga ttcctcccat
     4681 aacctgaacc ttgtagggat agaggcccaa tacgcgacga gctccttcac ggactaccgc
     4741 ataagcttcg tacaaaagat cgtcgaggga ttcaccgtta ttgtatcgct ccttaaattc
     4801 tgctgtctta gcttgcaact gttcatcagt cagcgcttcc atttcatcgg catacgagaa
     4861 gaccttgtct gccattttct caagttttct tagctctccc ttatcatttt caatgagaga
     4921 acgaagtaca tttgttacca tatcattcat cctatttcaa ttttagtcaa taatatattg
     4981 tagcagaaaa ttaggcaatt ttcaaggttt ggcactagga tacacagtat tcttagataa
     5041 aaataccata atctggaaaa atttctacac agtaatatta cattgctaaa aagaacatga
     5101 ttaagacacc aataactaaa ataaattcca ggataccatc ctctatctct agtaaaaata
     5161 taccatatac aagtagtata atcttattgt acaagtaaat atgtaaaaag gagaggaaaa
     5221 tgtataccaa gaaaatcgct cttaaacaac tagccatgtc tagtactaca gtagccatag
     5281 tgagtggcct atggggaagc cagcctccta tatgcatcga cggtatctgt tcaatatcaa
     5341 tatattgcac aagatgaact aacaagttca gagaaggatt ctgtcttatc taagctgaaa
     5401 actgtctcac cttccaaaga aatagctacg gagaatcaaa caatctatct catctacaag
     5461 accgaaccta aaaaaatatt tgggattctt ccggctactg gggagaccgg gatcaatcta
     5521 ttaacgattg gagggggact tcttctagtt ctaggaataa gtttggtcgg aaaaggcaaa
     5581 aagaaaggga gcgggaaaga agtcagtcat tcatagaaga gttcgtcaac aagtccttat
     5641 ttccagttgt tgagctgaaa cagtctatcc ccagactgtt tcactcccac ccccgcagac
     5701 cacaaattgg ctagtagtaa aatgaccagc cttgtcccca tggccgacaa agccattatt
     5761 tctgatatac agggaagaga aggaaacatc aatacactcc tagctcactt tgaagatggc
     5821 agcaccttat ttttcccact ccaatataca gaaagcaaag ataaacgtgc ttactaccaa
     5881 gtagcggatt ggggagttac ttattcacct ctccaaacat tacaagacta ctctgacatt
     5941 ctagacaagg tagttccaag cctacaagcg gttgaatttc gttctgaaaa tatgtatact
     6001 gctctctcca ttacagaaaa tcaagagcct gattatagaa ctagtatttt tacagaataa
     6061 gaaaaaagtt agggattatt tctagtccct aactttttat gttacttttc tgatacctgt
     6121 tttgccaaag caaagttccc aagagttgca gaaccatttt cagcaacagc tggcgttacg
     6181 atatattctt tgacatctgg tgttgggaga taatcgttca tcaaaccgac aaacttctca
     6241 cgtacacgat taagcatgtg ctcttgagcc ataactcctc caccaaatac aattacttgc
     6301 ggacgataaa gcaaggttgc ctgtactgcg gcttgagcaa tgtagtaagc ctgcacatcc
     6361 caaacgtctg agttgagctc aatcaattca ccacgaatac ctgtacgacc ttcaagagaa
     6421 ggacctgcag ctaagccttc caaacaccca ttgtggaatg gacacattcc tttaaattca
     6481 tgttttacat cgtaaggatg tagggaaacg taagtatgac ccgcttcggt atgacccaag
     6541 ccaccgataa actcaccatt ctgaatagca cctgcaccaa tacctgtacc gattgtatag
     6601 taaaccaaac tctttacccc tttacgaacc aatgtttcac caaaagctga tgaattcaca
     6661 tccgtcgtga agtagaatgg aatgttaaat tccttagcaa tcagaccaag taaatcaata
     6721 tttgaccagt gtggttttgg tgtcgaagtg atataaccat aagtctgtga gttttgatca
     6781 atatcaattg gaccgaaaga acctatcgca atacctgcca aacgatcttc atagcgcttg
     6841 aagaattcaa ccgttctctc aatcgtttca taaggagttg tcgttggaaa ttgcgttttt
     6901 tcaacaactt gaaagttctc atcacctact gcacaaacaa actttgtgcc accagcttct
     6961 aagctaccat ataattttgt catttgattt tctccaaaat ttttatcact tttattataa
     7021 catataagca aacataagaa aaaggctgaa agcctttttc ctgttaatta tgtagtagag
     7081 acagactcta caaatcgatt ttatataaga ttacttagct actttcaaga attctacacc
     7141 atgagtgatt gttccctcag caagtggaga tacttctgca aagtcagcag tgttggttac
     7201 aataatcata gttgtatcat caagccctgc ttcagcaatc ttagctgcat caaatttagc
     7261 aatcggagta ccagctttta ctttatcacc tgctgctact aatttttcaa atccattacc
     7321 gttcattgat acagtatcaa taccgatgtg aattaaaagt tcagcaccag atgctgtttt
     7381 caatccgtaa gcatggcctg tttcaaaagc aattgttact tctgcgtctg ctggagcgta
     7441 aacaacaccc tcagatggtt taacagccaa acctttaccc atagctcctg atgagaagac
     7501 tggatcatta acattttcaa gggcaacaac gtcacctgaa agtggagata caagagtttc
     7561 ttcagctaca agtcctgttt ctgcttcttc aagcgtttca gctgtttctt gtgttgaagc
     7621 actaggcttt tttacttctt tctcctcatc ttcataaccg aagaggtaag taagagcaaa
     7681 accaagagca aatgatacta ctaccataag gatgtattgg aacaattgac cgttaccaac
     7741 ataaagtgtc gcaccaggaa tgatggttac acccataccg ttaccagcaa gtccaaggat
     7801 tgaggcaaag gcaccaccga ttgcacctgc aatcaatgaa agaaggaatg gcttacggaa
     7861 acgcaagtta acaccgaaga tagctggctc agtaatacca aggaaagcag atagagctgc
     7921 agggaaagca agagctttca atttagggtt cttagttttc acaccaaccg ctacagtggc
     7981 cgcaccttgt gctgtcatag ctgcagtgat aatagcgttg aatgggttag ctcctgtgtt
     8041 agctaccaat tgagcttcca agaagttgaa gatatggtga acacctgata cgacgataac
     8101 ttggtgaaca ccaccgataa ggagaccacc tagacccatt ggcaagttca agatagcttg
     8161 tgttgcagcc aagatgtagt tttcaaccac gtggaagact ggaccgatga caaacaagcc
     8221 aaggattgac attacaaata aggtaatgaa tggagttacc aaaagatcta gaacttctgg
     8281 aacaaccttg cgaacagctt tctcgaattt agcaccaatc aaaccgatga tgaatgctgg
     8341 caagacagaa ccttgcagac caacgactgg gatgaagccg aagaacatca atggcttcac
     8401 atcaccacct gatgcaacga cccaagcgtt tggcaattga cctgcaatca acatcatacc
     8461 aagaacgata ccgatggttt ggttaccacc aaatacgcgg aaggttgacc ataccaccaa
     8521 ggctggcaat acgatgaagg ctgtatctgt taggatttgt gagtaagtgt tcaaatcccc
     8581 cgtcaagggc atttcaagag cggcaaacaa gccacgaaga cccatgaaaa gaccagttgc
     8641 tacgatagca ggaatgattg gaacgaatac gtcaccgaaa gtacggatcg cacgttggaa
     8701 agcattacct tgtttagcag cttcagcttt ttgttcacca gtagtcgctg ttggcaaacc
     8761 aagggcaacc acttcatcgt agattttgtt tactgtacca gtaccaaaga tgatttggta
     8821 ttgaccagag ttgaagaaag caccttgtac tttttcgatg tcttcgactg tatccttgtc
     8881 gatttttcct tcatcaacaa ccataacacg aagacgagtc gcacagtggg caacactacg
     8941 tacgttctca cgtccgccaa gggcatcaat gacttttttt gcaatttctg tattattcat
     9001 cttgcaaaaa tctccttatt aaatattttt tgcttt
//
LOCUS       DASGAC010000083         8826 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.083, whole genome shotgun sequence.
ACCESSION   DASGAC010000083 DASGAC010000000
VERSION     DASGAC010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8826
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.083"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            128..1774
                     /locus_tag="U1335_001397"
     CDS             128..1774
                     /locus_tag="U1335_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM5231864.1"
                     /translation="MSKWKKLASAGLAVATLSVLAACGNGGSKSSSADTSTINWYTPT
                     EIITLDISKNTDRYSATAIGNSGSNLLRAGENGVLNEDLAEKLEISEDGLTYTATLRD
                     GLKWSDGSDLTAEDFVYSWQRIADPATASEYAYLVAESGILNGEAVIAGEKPVTDLGV
                     KAEGNKVIFTLAKPAPQFKSLLSFSNFAPQSKAFVEKVGDEYGTASDKQIYSGPFTVE
                     DWNGTSGTYKLVKNENYWDAENVKIDTVNFQTVKKPDTAVQMYKQGELDYALISDTSA
                     IYNANKNNEAVVPVKEATTAYMVYNQTGSVPALSNTKIRQALNLATNREGVVEAAINT
                     GSVAATAFAPTGLAALSDGTDLAEFVAPGYKYDEAEATKLFKEGLAEAGLSEVTLTIT
                     ADADRPAAKAAVDYLKETWEKALPGLKVEEKFVTFKQRLEDTKNQNFEVALVLWGGDY
                     PEGSTFYGLMTTDSAYNYGKFSSTEYDAAYNKALTVDALDVDAAAADYKEAEKILFDN
                     AYYNPLYFRSQAALQNPSIKGFVRNSTGLQEDFTYAYKEE"
     gene            1838..2752
                     /locus_tag="U1335_001398"
     CDS             1838..2752
                     /locus_tag="U1335_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018366293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5231865.1"
                     /translation="MTKYLLKRIAILLATLWVVITLSFFLMQIMPGTPYNSPKLTDEM
                     IAMMNKQYGLDKPLWQQYLKYLTDILHGDFGTSYQSVNQSVTKLIMQRLGVSIHLGIQ
                     ALVVGISGGLLVGAISARNKNNKIDGFLSVVSTLGISIPAFIIGLLLLDYLGFKWALL
                     PLSGWGTFGQTVLPTLALAIPVFAQVTRFFRSEMIETLNTDYIQLARAKGMTNRQVTN
                     HHAYRNSMIPVLTLVGPMAANILTGSALIEQIFSIPGIGQQFVTSIPTKDYPVIMGTT
                     IVYAMMLMVAILITDIIISIVDPRVRLG"
     gene            2763..3794
                     /locus_tag="U1335_001399"
     CDS             2763..3794
                     /locus_tag="U1335_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004347296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5231866.1"
                     /translation="MTEQRKTFTLVGAGSSDSQEKIEKPALSFMQDAWRRLKQNKLAV
                     VSLWFIGLLLVFSIGSTFVVSTKSANSFNSEEVSTYRNLPPKLSDNLPFWNGSIVYSG
                     NTEANDAYADQSVPKSVKFVLGSDNLGRSIAKRVTVGIRISLLIAVIATLIDLIIGVT
                     YGLISGFSGGKVDTIMQRIIEVVSSIPNLVIVTMLGLLLGNGVTSIIISIAIVGWTSM
                     ARQVRNLTLSYKERDFVLASRALGESNLKIAFKHVLPNISGIIIVQIMMTVPSAIMYE
                     SVLSAINLGVKPPTASLGSLITDAQENLQYYPYQVMIPAAALVLISLAFILLGDGLRD
                     AFDPKSSAD"
     gene            3809..4852
                     /locus_tag="U1335_001400"
     CDS             3809..4852
                     /locus_tag="U1335_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012678998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231867.1"
                     /translation="MNQEMILQVENLNVTFHTYAGEVKAIRDVSFTLNKGETLAIVGE
                     SGSGKSVTTRTLMGLNAKNAHLSGKIHFKDKDLSELSESEWVKVRGNEIAMIFQDPMT
                     SLDPTMTIGMQIAEPIMLHEKVSKSEALKRALELMKNVGIPNAEEHIKDYPHQWSGGM
                     RQRAVIAIALAANPEILIADEPTTALDVTIQAQILNLMKEIQSQTQSSIIFITHDLGV
                     VAGMADRVAVMYAGKIVEVGTVEEVFYNPQHPYTWGLLNSMPTTETASGSLESIPGTP
                     PDLLNPPVGDAFAARNAYALDIDFEEQPPMFQISDSHYAATWLLDERAPEITPPLAIL
                     KRWEKWNSKKEKQ"
     gene            4849..5784
                     /locus_tag="U1335_001401"
     CDS             4849..5784
                     /locus_tag="U1335_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018380601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM5231868.1"
                     /translation="MSENRKKLVELKNVSLTFNVGKKNEVKAIDNVSFDIYEGEVFGL
                     VGESGSGKTTVGRTILKLYDYNAGDILFDGQSISKLSGKDLKEFRKDAQMIFQDPQAS
                     LNGRMKIRDIVAEGLDIHGLTSSKEERDERVQHLLDLVGLNKDHLTRYPHEFSGGQRQ
                     RIGIARALAVRPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFVAHDLSMVK
                     YISDRIGVMHWGKMLEIGTSDAVYNDPIHPYTKSLLSAIPEPDPEFEKNRVHVEYDPS
                     AELDSQERQMHEITPGHFVLATEEEAAAYRAERNK"
     gene            complement(5843..6211)
                     /locus_tag="U1335_001402"
     CDS             complement(5843..6211)
                     /locus_tag="U1335_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3397 domain-containing protein"
                     /protein_id="HEM5231869.1"
                     /translation="MFESIIFLKIVAFLFIFLTLAISIIAVKFFRLQNQGWNFADIAF
                     PLYAIEFYLISDKAYYNSLLPQLVLALSLLAIGLCGFFLLKKKNFLYRRFFKVFWRAS
                     FILTFLMYLALVIAVLTLKN"
     gene            6366..6791
                     /gene="rplK"
                     /locus_tag="U1335_001403"
     CDS             6366..6791
                     /gene="rplK"
                     /locus_tag="U1335_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004226069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEM5231870.1"
                     /translation="MAKKVEKLVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNA
                     RTADQAGMIIPVVISVYEDKSFTFITKTPPAAVLLKKAAGVEKGSGTPNKTKVATVTR
                     AQVQEIAETKMPDLNAASLEAAMRMIEGTARSMGFTVTD"
     gene            6832..7521
                     /gene="rplA"
                     /locus_tag="U1335_001404"
     CDS             6832..7521
                     /gene="rplA"
                     /locus_tag="U1335_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEM5231871.1"
                     /translation="MAKKSKNLRAALEKIDSTKLYSVEEAVALAKETNFAKFDASVEV
                     AYNLNIDVRKADQQIRGAMVLPNGTGKTSRVLVFARGAKAEEAKAAGADFVGEDDLVA
                     KINGGWLDFDVVIATPDMMAVVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGK
                     ITYRADKAGIVQALIGKVSFDADKLVENFKAFHDVMAKAKPATAKGTYMTSVSITTTQ
                     GVGIKVDPNSL"
     gene            7616..7903
                     /locus_tag="U1335_001405"
     CDS             7616..7903
                     /locus_tag="U1335_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231872.1"
                     /translation="MKATCEDFYSHLSAVYQLPEDAITSVLREKVFETAKELEQADNL
                     YLLADRLGRYVTAELTALTCHAPKELVQLSLYIQQLQNHYRIASFIPGKVE"
     gene            7909..8697
                     /gene="yghU"
                     /locus_tag="U1335_001406"
     CDS             7909..8697
                     /gene="yghU"
                     /locus_tag="U1335_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HEM5231873.1"
                     /translation="MTEYTKPLVWKWEDENDNRSGNRPTAGSRFEHKLPKGDKPLQVY
                     SLGTPNGIKVAIMLEELKELGITEAEYDLFLINIGQGDQFGSDFVDINPNSKIPAMVD
                     YSEKEPVRVFESANILLYLAEKFGAFLPKSWAERTEVLNWLFWQTGAAPFVGGGFGHF
                     FHYAPTAQEYPINRYAMETKRQLDLLDQLLATREYIAGNTYTIADIAIWSWYGRLAQG
                     ALYPGSAEFLDVDSYKHLKTWVEKIAQRPAVQRGLTVKYHSIDN"
BASE COUNT         2783 a         1596 c         1857 g         2590 t
ORIGIN      
        1 atattgaaaa tagaacgaaa agtcagaaaa tttatcaaaa atacttgcga ctgaataaaa
       61 attagtatat aatcttaagc ataacttaaa aagttgtaaa aaagttcata atcagggaga
      121 ctttcttatg agtaaatgga aaaaacttgc ttcagctggt ttagctgtcg ctacactttc
      181 tgtattagct gcctgtggta atggaggatc aaaatcttca tcagcagaca cttctacaat
      241 caactggtac acaccaactg aaatcatcac tcttgatatt tcaaaaaata cggaccgcta
      301 ctcagcgaca gcaatcggaa actcaggaag taacttattg cgtgctggcg aaaacggcgt
      361 gttgaatgaa gacttggcag agaaattgga aatttcagaa gatggtttaa cctatactgc
      421 aaccctacgt gatggcttga aatggtcaga cggtagtgat ttgactgctg aggattttgt
      481 atactcatgg caacgtattg ctgatccagc aactgcatca gagtatgcct atctcgtagc
      541 agaatctgga attttgaatg gtgaagcggt tattgctggt gagaaaccag ttaccgattt
      601 aggagttaaa gcagaaggta ataaagttat ctttactttg gctaaacctg caccacaatt
      661 taagagtcta ttatcattct ctaactttgc tcctcaaagt aaagctttcg ttgaaaaagt
      721 tggtgatgaa tacggtacag catctgataa acaaatttat tctggaccat tcactgttga
      781 agattggaat ggtacaagtg gtacatataa acttgttaag aatgaaaact attgggatgc
      841 tgaaaatgta aaaattgaca cagttaattt ccaaaccgtt aaaaagccag acacagctgt
      901 acaaatgtac aagcaaggcg agttggacta tgctttaatc tctgatacat cagcaatcta
      961 taatgcaaac aaaaacaatg aagcagtagt acctgtaaaa gaagcaacga ctgcttatat
     1021 ggtttataac caaacaggct ctgtcccagc tctaagcaat acaaaaattc gtcaagcatt
     1081 gaacttagca acaaaccgtg agggagttgt agaagctgcg atcaacacag gttcagttgc
     1141 tgcaactgct tttgctccaa caggcttagc tgccttgtct gatggtactg acttagctga
     1201 atttgttgca cctggttata agtatgatga agcagaagca actaagctat tcaaagaagg
     1261 tttggctgag gcaggtcttt ctgaagtaac acttacaatt actgcagatg cggatcgtcc
     1321 agcggcgaaa gcagcagttg attacttgaa agaaacttgg gaaaaagctc ttcctggttt
     1381 gaaagtcgaa gaaaaatttg ttacattcaa acaacgtttg gaagatacta agaatcaaaa
     1441 ctttgaagtt gctcttgtac tttggggtgg tgactatcca gaaggctcta cattctatgg
     1501 tttgatgaca actgattctg cctacaacta cggtaaattc tcaagtactg agtatgacgc
     1561 tgcctacaat aaagctttga cggttgatgc tctagatgtt gatgcagcag ctgctgacta
     1621 taaagaagct gaaaagattt tgtttgataa tgcttactac aacccacttt acttccgtag
     1681 tcaagccgca cttcaaaatc catctatcaa aggatttgta cgtaactcta ctggtcttca
     1741 agaagacttc acctacgctt ataaagaaga gtagttattg aaattttact tgcaaggatt
     1801 ggaactgcca attcttgctt ttgatttgag gaataatatg actaaatatt tattgaaaag
     1861 gatcgccatt ttattggcga cattatgggt agttattact ctctccttct tcttaatgca
     1921 aattatgccg gggacaccat ataatagtcc taagctgaca gatgaaatga ttgccatgat
     1981 gaacaaacaa tatggactgg ataagccgct ttggcaacag tatctaaaat atttgacgga
     2041 tattttgcat ggagatttcg gtaccagtta ccagtccgtc aatcaatcag tgaccaaact
     2101 catcatgcaa cgcctaggag tatctatcca tcttggtatt caagcacttg tagttggtat
     2161 tagcggaggt ctcttggtag gtgcaatttc agctcgaaat aagaacaata agattgatgg
     2221 atttcttagt gttgtatcta ctctaggtat ttctatcccc gctttcatca ttggtttgtt
     2281 gctgttagat tacctaggtt ttaaatgggc cttgttacca ctttctggtt ggggaacttt
     2341 tggacaaaca gttttaccca ctttagcttt agctatccca gtttttgctc aggtaacacg
     2401 tttctttcgc agtgagatga ttgaaacatt gaatactgat tacattcaat tagctcgtgc
     2461 gaaagggatg accaatcgtc aagttaccaa tcaccatgct taccgtaatt ccatgattcc
     2521 ggttttgacc ttggtgggac ccatggctgc gaacatcttg actggttcag ctttgattga
     2581 acaaatcttc tccattcctg gtattggaca acagtttgta acatctattc ctacaaaaga
     2641 ctatccagtc atcatgggta ctacaattgt ctacgctatg atgttgatgg ttgcgatatt
     2701 gattacagac attatcatta gtattgtaga tccacgtgtc agattgggat aaggagtgaa
     2761 taatgacaga acaaagaaaa acatttactt tggttggtgc tggtagttca gactcccagg
     2821 aaaaaattga aaaaccagcc ttgtcgttta tgcaagatgc atggcgacgc ttaaaacaaa
     2881 ataaattggc ggtagtatcg ctttggttta ttggattact tctggtcttt tcaatcggct
     2941 cgacttttgt agtttctact aaatctgcta atagttttaa tagtgaagag gtttctacct
     3001 atcgtaactt accgccgaaa ttaagtgaca atctaccctt ctggaatggt tccatcgtct
     3061 attcaggaaa tactgaggct aatgatgcct atgctgacca aagtgttcct aaaagtgtca
     3121 agtttgtctt aggttcagat aatttgggtc gtagtattgc aaaaagggta acggtcggaa
     3181 tacggatttc gttactaatt gctgtgattg ctaccttgat tgacttaatt atcggtgtga
     3241 cctatggttt gatctctggt ttttcaggtg gtaaagtaga taccatcatg cagcgcatta
     3301 ttgaggtcgt ttcttctatt ccaaacttgg ttattgttac catgcttggt ttgctcttgg
     3361 gaaatggtgt aacatcaatt atcatttcaa ttgctattgt tggttggacc tcaatggctc
     3421 ggcaggttcg gaacctgacc ttgtcctaca aggagcgtga ttttgttctt gcttcacgag
     3481 cgttgggtga gagtaacttg aaaatcgcat ttaaacatgt tttaccaaac atttcaggta
     3541 ttatcattgt acaaattatg atgactgttc caagtgctat tatgtatgag tccgtcttat
     3601 cagctatcaa ccttggtgtg aaaccaccta cagcatctct cggatcattg attacagacg
     3661 cacaggaaaa cttacaatat tatccatatc aggtaatgat tcctgcggct gctttggtac
     3721 tgatttcact tgcatttatc ttattaggtg atggcttacg cgatgcattt gatccgaaat
     3781 caagcgctga ttaggaatgg aggatgtgat gaatcaagaa atgattttac aagttgaaaa
     3841 tttaaatgtt acctttcata cctatgcagg tgaagtcaag gcgattcgtg atgtcagttt
     3901 tactttgaac aaaggagaga ctctggctat tgttggagag tcaggttcag gtaaatcagt
     3961 aacaacacga acgctaatgg gcttaaatgc aaaaaatgca catttgtcag gtaagattca
     4021 ttttaaagat aaagacttga gcgagctgtc ggagagtgag tgggtaaaag ttcgtggaaa
     4081 tgaaattgcc atgattttcc aagatccaat gacaagtttg gatccaacaa tgaccattgg
     4141 aatgcaaatt gctgagccaa ttatgttgca cgaaaaagta tcgaaatctg aggctttgaa
     4201 acgtgctttg gagctcatga agaatgttgg tattccaaat gctgaagagc acattaaaga
     4261 ttatccacat cagtggtcag gtgggatgcg tcaacgtgca gtcattgcga ttgcacttgc
     4321 agcgaatcca gaaattctaa tagcagatga accaacaact gccttagacg tgacaattca
     4381 agcgcaaatt ttaaatttga tgaaagaaat acagtctcaa acacagtctt ctattatctt
     4441 tattacccat gatttgggtg tggtagctgg tatggcagac cgtgtagctg ttatgtatgc
     4501 agggaagatt gtggaagttg gaacggttga ggaagtattt tataatccgc aacatcctta
     4561 cacatggggg ttattaaact ctatgccgac aacagagact gcttctggaa gtttggaatc
     4621 cattcctgga actcccccag atttgttgaa ccctcctgtt ggagatgctt ttgcagccag
     4681 aaatgcatat gctctcgata ttgattttga agagcaaccg ccaatgttcc aaatttcaga
     4741 tagccattat gcagcaacat ggttgttaga tgagcgagct cctgaaatta caccaccgtt
     4801 agcaatcttg aaacgttggg aaaaatggaa tagtaagaag gagaaacaat gagcgaaaat
     4861 agaaaaaaac tcgttgaact aaaaaatgtt tcattaactt ttaatgtagg taagaaaaac
     4921 gaagttaaag ccattgacaa tgtttccttt gacatttatg aaggagaggt ctttggtcta
     4981 gttggtgaat ctgggtcagg aaagacaacg gttgggcgta ccattctaaa gttgtatgac
     5041 tataatgctg gtgatattct ctttgatggc cagtctattt caaagctttc tggaaaagat
     5101 ttgaaagaat ttcgaaaaga tgcacaaatg attttccaag atcctcaagc tagtttgaat
     5161 ggtcgtatga aaatcagaga tattgttgca gaaggtttgg acattcacgg cttgacttct
     5221 tcaaaagaag aacgggatga gcgtgttcaa catttattgg atttagtcgg tttaaataag
     5281 gatcatttaa cgcgttatcc gcatgagttt tcaggtggac aacgacaacg gattggtatt
     5341 gcacgtgcct tagcagttcg tccaaaattc attatcgctg acgaaccgat ctcagcttta
     5401 gatgtatcca ttcaagcaca agttgttaat ttgatgcaaa aattgcagag agaacaaggt
     5461 ctaacctacc tctttgttgc acacgatttg tcaatggtta agtacatctc tgaccgtatt
     5521 ggtgttatgc actggggtaa aatgttagaa attggaacgt cggatgctgt ttacaatgat
     5581 ccaattcatc cgtacacgaa gagtttgctt tctgctatcc ctgaaccgga tccagaattt
     5641 gaaaaaaatc gtgtccatgt ggaatacgat ccaagtgctg aattagatag tcaagaacgt
     5701 cagatgcatg agattacgcc tggtcacttt gtattggcta cagaagaaga ggctgcggca
     5761 taccgcgctg aacgaaacaa ataagaaata caaaaaaacc tgaaaatttc aggtttttta
     5821 tgtatgtaat aagttttcaa acttagtttt ttaaggtcaa cacagcaata accaaagcta
     5881 gatacatcaa aaaggtcaag ataaaactag ctcgccagaa aaccttgaag aaacggcgat
     5941 ataaaaaatt ctttttcttt aaaaggaaga aaccacaaag accaatcgct agtagtgaga
     6001 gggctaggac aagctgaggc agtagactgt tatagtaggc cttgtccgaa atcagataaa
     6061 attcaattgc atagagagga aaggcaatgt ctgcaaagtt ccatccttgg ttttgcaacc
     6121 taaaaaactt gacagcaatt atcgaaatgg ccaaggttag aaagataaat agaaaggcta
     6181 ctatttttaa aaatataatc gattcaaaca tacattcatt ctataaaaaa tgtgaaaaaa
     6241 agtaaaccta aagcttgcat ttctttgaaa ttcgtgtata atgaaaaggt atgtgtaaaa
     6301 cacatatttg tgggaggtaa aaatctttaa ttaccgccaa aaccacaata ggaggatttt
     6361 atatcatggc taaaaaagtc gaaaaactcg taaaacttca aattcctgca ggtaaagcta
     6421 ctccagctcc accagtcggt ccagcacttg gtcaagcagg tatcaacatc atgggattca
     6481 caaaagagtt taacgctcgt acagctgacc aagctggtat gatcatccca gtagttatct
     6541 ctgtgtatga agataaatca ttcactttca tcactaaaac accaccagct gctgttcttt
     6601 tgaaaaaagc tgcaggtgtt gaaaaaggtt caggtacacc aaacaaaact aaagttgcaa
     6661 cagttactcg tgcacaagta caagaaattg ctgaaactaa aatgcctgac ttgaacgctg
     6721 catctcttga agctgcaatg cgtatgatcg aaggtactgc tcgttctatg ggattcactg
     6781 ttactgacta agtagcaccc aagattatct gattacaagg agacatataa catggctaaa
     6841 aaaagcaaaa acttgcgtgc tgctcttgaa aaaatcgaca gcacaaaact ttacagcgta
     6901 gaagaagctg ttgctcttgc aaaagaaact aacttcgcta aatttgatgc gtcagttgaa
     6961 gttgcttaca acttgaacat cgacgtacgt aaagctgatc aacaaatccg tggtgcaatg
     7021 gtattgccaa acggtactgg taaaacttca cgcgttcttg ttttcgcacg tggtgctaaa
     7081 gcagaagaag caaaagctgc tggtgcagac tttgttggtg aagatgacct cgttgctaaa
     7141 atcaacggtg gttggttgga cttcgacgtt gttatcgcaa ctccagatat gatggctgtt
     7201 gttggacgtc ttggtcgtgt acttggtcca cgtaacttga tgccaaaccc taaaactggt
     7261 acagtaacaa tggatgttgc taaagcagtt gaagagtcta aaggtggtaa aatcacttac
     7321 cgtgctgaca aagcaggtat cgtacaagct cttatcggta aagtatcatt tgacgcagac
     7381 aaactcgttg aaaacttcaa agctttccac gatgtaatgg ctaaagctaa accagctaca
     7441 gctaaaggta cttacatgac ttcagtatct attacaacaa cacaaggtgt tggtatcaaa
     7501 gttgatccta actcacttta atcaatagaa agattgtcta tgggcaatct tttttagttg
     7561 acattcaata aaacaaactc tataatatat gtataaagtg attgaggagg caactatgaa
     7621 ggcgacttgt gaagattttt atagtcatct ttcggcggtt tatcagctac cagaagatgc
     7681 tatcacatcc gttttgcgtg aaaaggtttt tgaaactgcc aaagagcttg aacaagctga
     7741 caatctctac ttacttgctg atcgattggg acgctatgtt actgcagagc tgacagcctt
     7801 gacttgccat gcaccaaaag agttggtaca gctttctctc tacattcaac aacttcaaaa
     7861 tcactatcgg atagctagtt ttatcccagg aaaggtagaa taaaaaagat gacagaatac
     7921 acgaaaccac tcgtttggaa gtgggaagat gaaaatgaca atcgttcagg caatcgtcca
     7981 acagcaggga gtcgctttga acataaatta ccaaaaggtg acaagcccct ccaagtttat
     8041 tccttgggaa cacctaacgg tattaaagtt gctattatgc tagaagagtt gaaggaactc
     8101 gggattaccg aagctgaata tgacctcttt ctcatcaata tcgggcaggg agatcagttt
     8161 ggatcagatt ttgtagatat taatccaaat tcaaaaattc cagctatggt tgattattcg
     8221 gagaaggagc cagttcgcgt ctttgaatca gccaatattc tactttacct ggcagaaaag
     8281 tttggtgcct ttttgccaaa atcatgggcg gaacgtacag aagttctaaa ttggcttttc
     8341 tggcaaactg gtgctgctcc ctttgttgga ggaggatttg ggcatttctt ccattacgct
     8401 ccgacagcgc aggaatatcc tattaaccgc tatgctatgg aaaccaagcg tcagctagat
     8461 ctcttggatc agctattggc gacaagagaa tatatagctg gaaataccta taccatcgca
     8521 gatattgcta tttggtcttg gtatggtcgt ttggcacaag gagccttgta tccaggttcg
     8581 gcagaatttt tagatgttga ttcttacaag catctaaaga cctgggtaga gaaaatagct
     8641 cagcgcccag ctgtacaacg agggttgaca gtgaaatatc attcaattga taattaattg
     8701 acttgcccgc cttatgggtg ggtttttctt ttactttggt atgataaaag tttataatga
     8761 aagagttaga ctttgtgaaa atccaaaaat agaaattaat aattgatact caatgaaaat
     8821 cagaat
//
LOCUS       DASGAC010000084         8713 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.084, whole genome shotgun sequence.
ACCESSION   DASGAC010000084 DASGAC010000000
VERSION     DASGAC010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8713
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.084"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(191..1453)
                     /locus_tag="U1335_001407"
     CDS             complement(191..1453)
                     /locus_tag="U1335_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HEM5231874.1"
                     /translation="MKKYQVIIQDILTGIEEHRFKRGEKLPSIRQLSEQYHCSKDTVQ
                     KAMLELKYQNKIYAVEKSGYYILEDRDFQDHTVELNPADFQELPYEDFRICLNESLIG
                     RENYLFNYYHQQEGLAELISSVQSLLMDYHVYTKKDQLVITAGSQQALYILTQMETLA
                     GKTEILIENPTYSRMIELIRHQGIPYQTIERDLDGIDLEELESIFQTGKIKFFYTIPR
                     LHNPLGSTYDIATKTAIVKLAKQYDVYIIEDDYLADFDSSHSLPLHYLDTDNRVIYIK
                     SFTPTLFPALRIGAISLPNQLRDTFIKHKSLIDYDTNLIMQKALSLYIDNGMFARNTQ
                     HLHLIYHTQWNKIKDCLEKYALNIPYRISKGSVTFQLSKGILSPSIQHMFGKCYYFSG
                     QKADFLQIFFEQDFADKLEQFVRYSRMN"
     gene            1572..2306
                     /gene="yaaA"
                     /locus_tag="U1335_001408"
     CDS             1572..2306
                     /gene="yaaA"
                     /locus_tag="U1335_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEM5231875.1"
                     /translation="MKIIIPNAKEVNTNLENASFYPLSDRSKPILDAISQFDVKKMAA
                     FYKLNEAKAELEADRWYRIKTGQAKTYPAWQLYDGLMYRYMDRRDIDSKEENYLRDHV
                     RIATALYGLIHPFEFISPHRLDFQGSLKIGNQSLKQYWRPYYDQEVGDDELILSLASS
                     EFEQVFSPQIQKRLVKILFMEEKAGQLKVHSTISKKGRGRLLSWLAKNNIQELSDIQD
                     FKVDGFEYCTSESTANQLTFIRSIKM"
     gene            2412..3851
                     /locus_tag="U1335_001409"
     CDS             2412..3851
                     /locus_tag="U1335_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM5231876.1"
                     /translation="MKKRSGRSKSSKFKLVNFALLGLYAITLCLFLVTMYRYNILDFR
                     YLNYIVTLLLVGVAVLAGLLMWRKKARIFTALLLVFSLVITSVGIYGMQEVVKFSTRL
                     NSNSTFSEYEMSILVPANSEITDVRQLTSILAPAEYDQENITALLDDISKMESTQLAT
                     SPATSYLTAYQSMINGESQAMVFNGVFTNILENEDPDFSSKVKKIYSFKVTQTVETAT
                     EQVSGDSFNIYISGIDTYGPISSVSRSDVNIIMTVNRATHKILLTTTPRDSYVAIADG
                     GQNQYDKLTHAGIYGVNASVHTLENLYGIDISNYIRLNFTSFLQLIDLVGGIDVENTQ
                     EFTSGGYNFPVGTVHLDAEQALIFVRERYSLANGDNDRGQNQEKVIAALIKKLSSPDN
                     LANYQAILTGLEGSIQTDLSLETIVGLVNTQLESGTQFTVESQALTGTGRSDLSSYAM
                     PGSQLYMMEINQDSLEQAKAAIQSVLDGN"
     gene            3868..4557
                     /locus_tag="U1335_001410"
     CDS             3868..4557
                     /locus_tag="U1335_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular biosynthesis protein CpsC"
                     /protein_id="HEM5231877.1"
                     /translation="MNNQEMNTIEIDILLLLKTIWRKKFLIIITALFGAGIAFVYSSF
                     LVTPQFDSTTRIYVVSQNVEAGAGLTSQELQAGTYLVKDYKEIILSQDVLTQVATELN
                     LKESLKEKISVSIPVDTRIVSISVRDADPNEAARIANSLRTFAAQKIVEVTKVSDVTT
                     LEEAVPAEEPTTPNIKRNILLGLLAGGILATGIILAMEVLDDRVKRPQDIEEVMGLTL
                     LGVVPDSKKLK"
     gene            4567..5253
                     /locus_tag="U1335_001411"
     CDS             4567..5253
                     /locus_tag="U1335_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase"
                     /protein_id="HEM5231878.1"
                     /translation="MATLEIARTKREIVNKTEEYFNAIRTNIQLSGADIKVVGITSVQ
                     SNEGKSTTAASLAIAYARSGYKTVLVDADIRNSVMPGFFKPITKITGLTDYLAGTTDL
                     SQGLCDTDIPNLTVIESGKVSPNPTALLQSKNFENLLATLRRYYDYVIVDCPPLGLVI
                     DAAIIAQKCDAMVAVVEAGSVKRSSLKKVKEQLDQTGTPFLGVILNKYDIANEKYSEY
                     GNYGHYGKKA"
     gene            5292..6023
                     /locus_tag="U1335_001412"
     CDS             5292..6023
                     /locus_tag="U1335_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000565352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine protein phosphatase"
                     /protein_id="HEM5231879.1"
                     /translation="MIDIHSHIIFGVDDGPETIEESLSLIGEAYRQGVRYIVATSHRR
                     KGMFETPEKVIMTNFLQLKAAVAEVYPEIRLCYGAELYYSKDILSKLEKKKVPTLNGS
                     RYILLEFSMNTPWKEIQEAVNEVTLLGLTPVLAHIERYDALAFHAERVEELIDKGCYT
                     QVNSNHVLKPTLIGDRAKEFKKRTRYFLEQDLVHCVASDMHNLSSRPPFMREAYKLLT
                     EEFGKDKAKALLKKNPLMLLKNQAI"
     gene            6052..7878
                     /locus_tag="U1335_001413"
     CDS             6052..7878
                     /locus_tag="U1335_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEM5231880.1"
                     /translation="MDLGTVTDKLLERNSKRLILMCMDTCLLIVSMILSRLFLDVIID
                     IPDERFILAVLFVLIFYLIISVRLKVFSLITRYTGYQSYVKIGLSLISAYSLFLIISM
                     ILWQTFSYRFILVSLFLSYVMLITPRIVWKVLHETRKNVIRKKDSPLRILVVGAGDGG
                     NIFINTVEDRKLNFEIVGIIDRDPNKLGTFIRTAKVLGNRNDIPRLVEELAVDQVTIA
                     IPSLNGKEREKIVEICNTTGVTVNNMPSIEDIMAGNMSVSAFQEIDVADLLGRPEVVL
                     DQDELNQFFKGKTILVTGAGGSIGSELCRQIAKFTPKRLLLLGHGENSIYLIHRELLE
                     KYQGKIELVPLIADIQDRELIFSIMAEYQPDVVYHAAAHKHVPLMEYNPHEAVKNNIF
                     GTKNVAEAAKTAKVTTFVMVSTDKAVNPPNVMGATKRVAEMIVTGLNEPGQTQFAAVR
                     FGNVLGSRGSVVPLFKEQIKKGGPVTVTDFRMTRYFMTIPEASRLVIQAGHLAKGGEI
                     FVLDMGEPVQILELARKVILLSGHTEEEIGIVESGIRPGEKLYEELLSTEERVSKQIY
                     EKIFVGRVTNKQSDIVNSFINGLLQKDRNELKDVLIEFAKQE"
     gene            7964..8680
                     /locus_tag="U1335_001414"
     CDS             7964..8680
                     /locus_tag="U1335_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEM5231881.1"
                     /translation="MLGHRLVREKENRIKGGLYHKIQIELAFNSNHIEGSQLTYDQTR
                     YIYETNTIGFEENSTIKVDDIIETTNHFTAFDFLLDSFQDDLNETWIKEIHAILKRGT
                     SDSRKSWFQVGDYKSYPNEVGGRETTLPEKVESDMQELLNSYHRLPETSFEDILDFHV
                     RFERIHPFQDGNGRVGRLIMFKECLKHVHVPFIIGGDIKYFYYRGLAEWGEQNGFLLD
                     TCLAAQERFKQYLDYFRIED"
BASE COUNT         2725 a         1464 c         1876 g         2648 t
ORIGIN      
        1 acaatttggg gatgtaattt ccactatata gaataatccc cctcgtcttt taagttcgag
       61 ggggattgtt tgtgtgaggt tattaaattt cattcattca aatacagtca tttgaattag
      121 ctttgataca tcgtcacttt cgacttgccg tactttagta cagcctgcgc ctcagttcct
      181 tgtctaaaag ctaattcatt cgactatatc ttacgaattg ctccagttta tctgcaaaat
      241 cttgttcaaa gaagatctgt aagaaatcag ctttctgtcc gctgaaataa taacatttgc
      301 caaacatgtg ttggatgcta ggcgaaagaa tccccttgct tagctgaaag gtcacgctcc
      361 ctttggaaat tcgatacggg atgttcaaag cgtatttctc taaacaatct tttattttat
      421 tccactgagt gtgataaata agatgaagat gctgtgtgtt tcgtgcaaac ataccgttat
      481 caatgtagag cgagagagct ttttgcatga taagattggt atcgtagtcg attagactct
      541 tatgtttgat gaaggtatca cgtagctgat taggaaggct gattgcaccg attcggaggg
      601 caggaaagag tgtcggtgta aaagatttta tgtagatgac acgattatct gtatcaagat
      661 agtgtaaagg taggctatga ctagaatcga aatccgccaa atagtcatcc tcaatgatgt
      721 agacatcgta ttgctttgct aattttacga tagctgtttt tgttgctata tcataggttg
      781 aaccgagagg gttgtgcaag cgaggaattg tgtagaaaaa cttaattttt ccagtctgga
      841 agatactttc caattcttct aggtcaattc catctaaatc tcgttcaatt gtttgatagg
      901 ggattccttg atgtcgaatg agctctatca ttcgtgaata ggtagggttc tctatcaaga
      961 tttccgtttt tccagccaag gtttccattt gtgtgagaat atatagagct tgttgactac
     1021 ctgctgtgat aaccagttgg tctttttttg tatagacatg atagtccatt aacagacttt
     1081 gaacggagga aatcaattct gccaatccct cttgctggtg atagtagttg aataggtaat
     1141 tttcccgccc aataagactt tcgtttagac aaatccgaaa atcttcatag ggcaattctt
     1201 gaaagtctgc aggattgagc tctacagtat ggtcttggaa atctctatct tctaagatat
     1261 aataaccgct tttttcgaca gcgtagatct tattttgata ctttaattcc aacatagcct
     1321 tttggacagt gtctttgcta caatgatatt gctcgctgag ttgacggata gaaggtaatt
     1381 tctctccacg tttgaatcgg tgttcctcta ttccagtcaa aatatcttgg atgataactt
     1441 gatatttttt catctaggcc ccctttttat agactatgtt actagttagt atataggaaa
     1501 aattgaagaa agacaacatc tggatggggt tgagtttcag gaattaagct actctatggt
     1561 ataattaagt gatgaaaata attataccta atgcaaaaga agtaaataca aatttagaga
     1621 atgcctcgtt ttatcccctg tctgatcgaa gtaagccgat actggatgcc ataagtcaat
     1681 ttgatgtaaa aaagatggct gccttttata aattgaatga agcaaaggct gagttagaag
     1741 ctgaccgttg gtatcgaatc aagacaggtc aagcaaaaac ctatccagcc tggcagttat
     1801 atgatggtct catgtatcgt tatatggata ggcgagatat agattcgaaa gaagaaaatt
     1861 atctacgtga ccatgttcgt atagcgacag ccttatacgg attgattcat ccttttgaat
     1921 tcatttcacc tcaccgctta gattttcaag ggagcttaaa gataggcaat cagtctttga
     1981 aacagtactg gcgaccgtat tatgaccaag aagttggtga tgatgaactg attctctcgc
     2041 tggcttcgtc agaatttgag caggtatttt ctccacagat tcagaaaaga ttagttaaaa
     2101 ttcttttcat ggaagaaaaa gcaggtcagc taaaagttca ctcgactata tcaaaaaaag
     2161 gtagaggaag attgctgtcc tggttggcta agaacaatat tcaggaatta tcggatattc
     2221 aagattttaa ggtggatggc tttgaatatt gtacttccga atcaacggca aaccaactta
     2281 ccttcatacg atcaatcaaa atgtgaaatt atgaaaaaga caacgttttc cagcactaag
     2341 taaggatagg aaaatattaa tttctatggt ataatgggtg cgttataagt aaaagtctag
     2401 gaaggttgtt tatgaaaaag agaagcggac gaagtaagtc gtccaagttc aaattggtaa
     2461 attttgcgct tttgggactt tatgccatta ctctatgttt gttcttagtg actatgtatc
     2521 gctataacat cctagatttc cggtatttga actatattgt gacgcttttg ctagtaggag
     2581 tggcagtatt ggctggatta ttgatgtggc gtaagaaagc gcgcatattt acagcgctct
     2641 tacttgtttt ttcgctggtc atcacgtctg tcggaatcta tggaatgcaa gaagttgtaa
     2701 aattttcaac acgactaaat tcaaattcga cgttttcaga atatgaaatg agcatccttg
     2761 tcccagcaaa tagtgagatt acagatgttc gtcagcttac tagtattctt gctccagccg
     2821 aatacgacca agagaacatc accgctttat tggatgacat atccaaaatg gaatctactc
     2881 aactagcaac tagccccgca acctcttacc tgacagcata tcaatctatg ataaatggcg
     2941 agagtcaagc gatggtcttc aacggagttt ttaccaatat tttagaaaat gaagatccag
     3001 acttttcttc aaaagtaaaa aaaatatata gtttcaaagt gactcagact gttgaaacag
     3061 ctactgagca ggtgagtgga gatagcttta atatctatat tagtggtata gatacttacg
     3121 gtccaatttc atctgtttca cgttcagatg tcaatatcat tatgactgtc aatcgtgcga
     3181 cacataagat tttattgaca actactccac gagattcata cgttgctatt gcagatggtg
     3241 gtcaaaatca atacgacaaa ttaacacatg ctgggattta tggtgttaac gcctcagtgc
     3301 acaccttaga aaatctttat ggtattgaca ttagtaacta tatccgactc aactttactt
     3361 ccttcttgca gttgattgat ttggttggtg gtattgatgt tgaaaatacc caagaattta
     3421 caagcggagg gtataatttc cctgttggga ccgtacatct agacgcagag caagcgctaa
     3481 tctttgttcg tgagcggtat tcgttggcta atggtgataa tgatcgcggt caaaaccaag
     3541 aaaaagtcat tgcagccctc atcaaaaaat tgagttcacc agataatcta gcgaattatc
     3601 aagctattct aactggtttg gaaggatcta tccaaacaga tttgagctta gaaacgattg
     3661 tgggcttggt aaatacccaa ttagaatcag gaacacaatt tacagtagag tcacaagcat
     3721 tgacaggaac aggacgctca gatttatctt cttatgcgat gcctggttca caactttata
     3781 tgatggaaat taaccaagat agtctggagc aagcaaaggc agcgattcag tcagtattgg
     3841 atggaaatta aaaaaatagg agaaaacatg aataatcaag aaatgaatac aatcgaaatt
     3901 gatattttac tcttactgaa aacgatttgg agaaagaaat ttcttattat catcacagct
     3961 ctttttggag cagggattgc ttttgtctat agtagttttt tagtaacccc tcaatttgac
     4021 tccactacac ggatttatgt agtcagtcaa aatgttgaag ccggtgcggg attgactagc
     4081 caagagttac aagcgggtac ctatttggta aaagactata aggaaattat cctatcacaa
     4141 gatgtattga cacaagtagc aacggaattg aatctgaaag agagtttgaa agaaaaaatt
     4201 tcagtttcta ttcctgttga tactcgtatc gtttctatct ccgtgcgtga tgcggatcca
     4261 aatgaagcgg cacgtattgc aaatagcctt cgcacctttg cagcgcaaaa gattgttgag
     4321 gtcaccaagg taagcgatgt gacgacactt gaagaagcag tcccagcgga agaaccaacc
     4381 actccgaata taaaacgcaa tatcttgctt ggtttattag ctggaggtat cttggcaacg
     4441 ggaattatct tggctatgga agttttggat gaccgtgtca aacgccctca ggatattgaa
     4501 gaggtaatgg gcttgacctt gcttggtgta gtaccagatt cgaagaaatt gaaataggag
     4561 aacaatatgg caacgttaga aattgcgcgt acaaaaagag agatagtaaa taaaaccgag
     4621 gagtatttca atgccatccg taccaacatt cagcttagcg gagcggatat taaggttgtt
     4681 ggcattacct ctgttcaatc aaatgaaggt aagagtacaa ctgcggctag tctcgctatt
     4741 gcctatgctc gttcaggtta taagaccgtt ttggtggatg cagatatccg aaattcggtc
     4801 atgcctggtt tcttcaagcc aattacaaag attacaggtt tgacggatta cctagcaggg
     4861 acaacagact tgtctcaagg attatgcgat acagatattc caaacttgac cgtcattgag
     4921 tcaggaaagg tttctcccaa ccctactgcc cttttacaaa gtaagaattt tgaaaatcta
     4981 cttgcgactc ttcgtcgcta ttatgattat gttatcgttg actgtccacc attaggactg
     5041 gtaattgatg cagctatcat tgcacaaaaa tgtgatgcga tggttgcagt agtagaagca
     5101 ggcagtgtta agcgctcatc tttgaaaaaa gtaaaagagc agttggatca aacaggcaca
     5161 ccgttcttag gcgttatctt gaacaaatat gatattgcca atgagaagta tagtgaatac
     5221 ggaaactacg gacattacgg caaaaaagct taatttctca gataatataa gtttgataag
     5281 taggtattag tatgattgat attcattcgc atatcatatt tggtgtggat gacggtcccg
     5341 aaactattga agagagcctg agtttgatag gcgaagctta tcgtcaaggt gttcgctata
     5401 tcgtagcgac atctcataga cgaaaaggga tgtttgaaac accagaaaaa gttatcatga
     5461 ctaactttct tcaacttaaa gcagcagtag cagaagttta tcctgaaata cgattgtgct
     5521 atggtgctga attgtattat agtaaagata tcttaagcaa acttgaaaaa aagaaagtac
     5581 ccacacttaa tggctcgcgc tatattctct tggagttcag tatgaatact ccctggaaag
     5641 agattcaaga agcagtgaat gaagtgacgc tacttgggct aactcccgta cttgcccata
     5701 tagaacgata tgatgcacta gcgtttcatg cagagagagt agaagagcta attgacaagg
     5761 gatgctatac tcaggtaaat agtaaccatg tgctgaagcc cactttaatt ggcgatcgag
     5821 caaaagaatt taaaaaacgc actcggtatt ttttagagca ggacttagta cattgtgttg
     5881 ctagcgatat gcataattta tctagtagac ctccgtttat gagggaggct tataagttac
     5941 taacagagga atttggcaaa gataaagcga aagcgttgct gaaaaagaat cctcttatgc
     6001 tattaaaaaa ccaggcgatt taaactggtt actctagatt gtggagaaaa aatggattta
     6061 ggaactgtta ctgacaaact gttagagcgc aacagtaaac gattgatact catgtgcatg
     6121 gatacgtgtc ttcttatagt ttccatgatt ttgagcaggc tgtttttgga tgttattatt
     6181 gacattccag atgaacgctt tattcttgca gttttatttg ttttaatatt ctacctgatt
     6241 atctcagtta gactaaaggt tttttcgtta attacgaggt atactggata tcaaagttat
     6301 gtgaaaatag gactgagttt gatatccgct tattcattat ttttaatcat ttcaatgatt
     6361 ctatggcaga cctttagtta tcgtttcatc ttagtgtcct tatttttgtc gtatgtaatg
     6421 ctcattactc cgaggattgt ttggaaagtc ttacatgaga cgagaaaaaa tgtcattcga
     6481 aagaaggata gcccactaag aatcttagta gtaggtgctg gagatggcgg gaatatcttc
     6541 atcaataccg tcgaagatcg aaaattgaat tttgaaattg tcggtataat tgatcgtgat
     6601 ccaaataaac ttggaacatt tatccgtacc gctaaagttt taggaaaccg taatgatatt
     6661 ccacgattgg tagaggaatt agctgttgac caagtgacga ttgccatccc ttctttaaat
     6721 ggtaaggagc gagagaagat tgttgaaatc tgtaatacta caggagtgac cgtcaataat
     6781 atgccgagca ttgaagacat tatggcgggg aacatgtctg tcagtgcctt tcaggaaatt
     6841 gacgtagcag accttcttgg tcgaccagag gttgttttgg atcaggatga attgaatcag
     6901 tttttcaaag ggaaaacaat ccttgtcaca ggagcaggtg gctctatcgg ttcagagtta
     6961 tgtcgtcaaa ttgctaagtt tacgcctaaa cgcttgttgt tgcttggaca tggagaaaat
     7021 tcaatctatc tcattcatcg agagttactg gaaaagtacc aaggtaagat tgagttggtc
     7081 cctctcattg cagatattca agatagagaa ttgattttta gcataatggc tgaatatcaa
     7141 cccgatgttg tttatcatgc tgcagcacat aagcatgttc ctttgatgga atacaatcca
     7201 catgaagcag tgaagaataa tatttttgga acgaagaatg tggctgaggc ggctaaaact
     7261 gcaaaagtta ccacatttgt tatggtttca acagataaag ctgttaatcc gccaaatgtt
     7321 atgggagcga ctaaacgtgt tgcagaaatg attgtaacag gtttaaacga gccaggtcag
     7381 actcaatttg cggcagtccg ttttgggaat gttctaggta gtcgtggcag tgttgtgccg
     7441 ctattcaagg aacaaattaa aaaaggtgga cctgttacgg tcaccgactt taggatgact
     7501 cgttatttca tgacgattcc tgaggcaagt cgtttggtta tccaagctgg acatttggca
     7561 aaaggcggag aaatttttgt cttggatatg ggtgagcctg tacaaattct ggaattggca
     7621 agaaaagtta ttctgctgag tggtcatact gaggaagaaa tcgggattgt agaatctgga
     7681 atcagaccag gcgagaaact ctacgaggaa ttactatcaa cagaagaacg tgtcagcaaa
     7741 cagatttatg aaaaaatatt tgtgggtcgc gttacaaata agcaatcgga cattgtcaat
     7801 tcatttatca atggattact ccaaaaagat agaaatgaat taaaagatgt gttgattgaa
     7861 tttgcaaaac aagaataaag aaagtaaaag atatttttac tttcctagag tttaaatgag
     7921 atttaaattc taggaaggtt gaaatacttt cctgaggtaa gatatgctag gtcataggtt
     7981 agtaagagaa aaagaaaata ggatcaaagg tggtctttac cataagattc aaatcgagct
     8041 ggctttcaac tcaaaccaca ttgaaggcag tcaactgacg tatgaccaga caaggtatat
     8101 ctatgagacc aatacgattg gttttgaaga aaattcaacc ataaaggtgg atgatattat
     8161 cgaaacgacc aatcatttta cggcttttga ttttctctta gacagctttc aagatgattt
     8221 gaatgaaact tggataaagg agattcatgc tattttgaag agaggaacct ctgattctcg
     8281 gaagtcatgg tttcaagtcg gagactataa gtcgtaccca aatgaagttg gcggacgtga
     8341 aacgactttg ccagaaaaag tagaatccga tatgcaagaa ttgctaaaca gctatcaccg
     8401 cttgcctgag acttcctttg aggatattct tgactttcat gttcgatttg aacgcatcca
     8461 tcccttccaa gatggtaacg ggcgagtagg tcgattgatt atgtttaaag aatgtctcaa
     8521 acatgtacat gtccccttta tcatcggagg tgacataaag tatttttact atcgtggctt
     8581 agccgagtgg ggagagcaga atggtttctt gctggatact tgtctagcag cacaagagcg
     8641 atttaagcag tatttggatt attttaggat tgaggattag ttagtaagaa tagcgaagct
     8701 tataaatgga aga
//
LOCUS       DASGAC010000085         8665 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.085, whole genome shotgun sequence.
ACCESSION   DASGAC010000085 DASGAC010000000
VERSION     DASGAC010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8665
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.085"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(60..1328)
                     /locus_tag="U1335_001415"
     CDS             complement(60..1328)
                     /locus_tag="U1335_001415"
                     /inference="COORDINATES: protein motif:HMM:NF024803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM5231882.1"
                     /translation="MQVKDVEKLTGLSTKAIRLYEEKGLIEVARNPVNDYRDYSEENV
                     RQLRLIKLLRYLEFSLAEIKDLLALPEEDLQSALREKKRGINQQAEELTDKVDLLDQV
                     VRDLGKKEDWLEEAQDSIAFVESGEFQDLKQDLEDALLPSIWMTFLQSLMASGPILWL
                     FTRIQQGRQENLFLLAVVSLLATAWITLIWRDYLVTWWKHRDKVRQKNRSQAWWIPIG
                     FISLVGGIAYFVLVGWLTERFFLPSDWLFYEYSTGLGKVAIFFIIAFLVFLLGKLAKL
                     VKLSWKYGLGMAGGCILLTALLISTTTAVTKDQIIDINLLAPSKEYLYSDVKSVWTGF
                     GTKLVTVNRSERQGEFSYRIQLDGKKIVFMQPTVNQNLIPDDTYIELEEFDRRLMNLG
                     IPKESSIEGSQYNELDSHYLERFLQIVENK"
     gene            complement(1764..2507)
                     /locus_tag="U1335_001416"
     CDS             complement(1764..2507)
                     /locus_tag="U1335_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5231883.1"
                     /translation="MYKRFLALLWLRTQVLVTNKNILLPVLMPYFMLLLFKFVMKTDD
                     TKAMDLMGICFSMGIGMSVGSPISAMISEEKEKNNLSTLLLTGVRPSEYVLSILCYPV
                     VISFVNLILFPAITQADVSGYVLSYSVIMLLTSLASILINLLIGATSQSQSKSQVTSM
                     LITMAVSMGPSLSLMNETVGQILKYSFLGAYIEFFKNPHFELLNQEFYYLLGWIVLIS
                     LALILYLGHWWKYFSNSLSGIKEKIQYSL"
     gene            complement(2500..3324)
                     /locus_tag="U1335_001417"
     CDS             complement(2500..3324)
                     /locus_tag="U1335_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000621675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231884.1"
                     /translation="MITVQHIHKQFGDKVALDNISFDIQEGQIFGFLGPSGSGKTTMI
                     KIITGQLPADSGKSYLLGKESSLLSPEDFEAMGLVSDSSGFFEKMTLENNLLFYAKFF
                     GVSSKEVEVILQKVGLLDSKKTIAEKLSTGMKQRMLLARALINSPKVLFLDEPTSGLD
                     PTTSKRIHELLLELKGKGTTIFLTTHDMAEATFLCDQLVLLNQGNLVEKGSPQDLIHK
                     YNVTKKVRVTFEDGSDDELLFSELTPEKLVQATTIHSCEPTLEDIFIQQTGATLNV"
     gene            complement(3457..5169)
                     /locus_tag="U1335_001418"
     CDS             complement(3457..5169)
                     /locus_tag="U1335_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231885.1"
                     /translation="MNKRLVGVLLKSLNKTMFLFGIVLSALGVGMGLFLPQFIGRLLD
                     QTYLSNLLTRPELLAGFILFFVSVYAVQALSNYFIGRSGSNALKRLQQYIYESLLTTS
                     VKDLDQYQSGDLASRLTNDMSVVLNFITVILPNFLMNGLMVMGSIYFLWTISPWLTGL
                     SLFLLPLLSMVMIPMNQRLEGYYSAYQEGLGQVSSRISHKFTTIRLMKAFQGEKHEQR
                     EMGKSFQYLSQTFEKMIRLSAVQHTLVSSLMTGFIILMLLIAGIEVTKGVMTMATLTT
                     FVLYMMQLIDPVTDIAASLNELTEFHAVSKRLVELLELNKEEQEDTELVDDASIQLEN
                     VRFSYHTDPVLNGVSVRIPEGAHVAIVGPSGAGKSTIFSLLMKYYQDYQGEIRIGQQC
                     LSDISTKEMRRLISFIPQDNTLFHGTIRENLLYGKNESVSEERIAYILKELGLSSLVA
                     ELEDGLDTRISENGTGLSEGQKQRFSIARALLLEHPIYLLDEATASLDTVTERVISKA
                     IDRLTAGKTRLTIAHRLHTVREADAILVLDKNGQVADYGHHQQLVERNHLYQDFLRGL
                     PQAS"
     gene            complement(5172..5945)
                     /locus_tag="U1335_001419"
     CDS             complement(5172..5945)
                     /locus_tag="U1335_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231886.1"
                     /translation="MKQIFPAVFRTIWKRKETQIYLLFTLFPFIYLVTSFIEGSNFMQ
                     IHAGEGYKVVLVAFTNMMVSSLDSFILPSLTLYFLAISVFRKEVDEHTMFLYRDLGRK
                     QIFWSKYLGLLATIVIFYGFFFVTSAFVHYVRVIHLPFGSPAVFDVSLAESLGNVFGI
                     VAYLLKDILSVSLATALCLYLKNITTMIIGFLVTITMMILAVIGGPIAMLFPTSYVAL
                     ANEGLTGAGLAYLGAIGVTLVYVLVFTKIAAKKFKNLEF"
     gene            complement(5951..6823)
                     /locus_tag="U1335_001420"
     CDS             complement(5951..6823)
                     /locus_tag="U1335_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231887.1"
                     /translation="MLKINHLSKQFAGNEFYSLKDVSLEINKGEIVGLIGKNGAGKST
                     LMKLMAKSLKPSSGTITYKGTDIFSQDNLLADFGIMIDPVFYPEMTVMDNLKFYLDLH
                     GKKDLYPNIEKTLKLVELWEARNRKPKGFSFGMKQRTALAIALVAEPDFLILDEPFVG
                     LDPIGVQKLIDILKQWSSERQISMLISSHQLGELEALCSRYVYIESGELAEAFEGKSH
                     PSVLVQLDTTKNLDSVEALLNDHVVLEGEVLEISTATPTSELNQIFGVLARQELIVKL
                     EVKENHLKEIFTKG"
     gene            complement(6816..7244)
                     /locus_tag="U1335_001421"
     CDS             complement(6816..7244)
                     /locus_tag="U1335_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231888.1"
                     /translation="MIFILLLSLFYICLTVASSQLLLSLSVPVLLLLTYLLPPIVNSI
                     CMGLQKNRSWKAWSAGIFPTMSMIFYAAFAYITSSNGQWAQFAQLHTVSDDVMSVELA
                     GELLVPSQMLFIAVVYYGVAIATYFIQQTSRQKEKGVTYA"
     gene            complement(7259..7837)
                     /locus_tag="U1335_001422"
     CDS             complement(7259..7837)
                     /locus_tag="U1335_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5231889.1"
                     /translation="MVIRYMRPVALSIALIILASISYLLATSLVLFSSSQFLQLAYLF
                     SIMVGMPVGFILLPSWLTKRYQFYKETADIKFSWKEFLLVAIAIFFINSLFIQSEEYV
                     NQFIIATCEEFLFRYLIYRILKSEYPTWLAMLVTSLLFGVLLHMNYPLLDNLIIRTPL
                     GLLFSILATRFGLQYAIGGHWIYNLLVSRFPF"
     gene            complement(7847..8575)
                     /locus_tag="U1335_001423"
     CDS             complement(7847..8575)
                     /locus_tag="U1335_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HEM5231890.1"
                     /translation="MNMFRSIFKSVIYRRDVALFYAFAGLPILVPILSKFLVGVKAEY
                     TDNFLDFLGAALSTQDGIVLPTLLLSLIISAVFRDEIDSGILFLYKDLNRTRLFNAKI
                     ISLVVMYASYVLLTVLTSAIAYFGFLNASGKVVSNDWSNVQSTLLSIFATISINIIGV
                     LLVATVSIKAKSLQAVLAGVFWSLFTTTAPFLIGVRYVVPNGYARMSFNQPLLAWSLV
                     VAITTFYIVATYFKGRSNFEKLEF"
BASE COUNT         2822 a         1946 c         1467 g         2430 t
ORIGIN      
        1 gagtttatga tacgcaaagt ttttttattt ggctagaatt aactagcaca acgggtattt
       61 tatttatttt ctactatttg caaaaatcgc tctagatagt gcgaatctaa ctcattgtac
      121 tgactgccct ctattgaact ttctttggga atgcccagat tcattagtcg ccgatcaaac
      181 tcctctagtt cgatataggt gtcgtcaggg atcaagttct gattaacagt tggttgcata
      241 aacacaatct ttttcccatc cagttgaatt cgatagctaa attccccttg cctttcagac
      301 ctgttcactg tcactagctt ggtcccaaag cctgtccaga cagacttgac atcgctgtaa
      361 agatattcct tggacggagc cagcagattg atgtcgataa tctggtcttt ggtcactgct
      421 gttgtggtag aaatcagcag agcggtcaat aggatacaac cgcctgccat acctaagccg
      481 tatttccaag ataacttcac cagcttcgcc agttttccca aaagaaaaac gagaaaagct
      541 atgataaaaa atatagcaac cttgcccaga ccagtcgaat actcatagaa gagccagtca
      601 cttggtagga aaaatctttc ggtcaaccag ccgacaagga caaagtaggc aatcccacct
      661 acgagggaga taaaaccaat cggaatccac caggcctgac tacggttttt ctggcggacc
      721 ttgtcccgat gtttccacca agtcacgagg tagtctcgcc agataagcgt gatccaagcg
      781 gttgctagta gggaaaccac tgctaataag aaaaggtttt cctgccgacc ttgttggatg
      841 cgggtaaata gccagaggat gggacctgat gccatcaagc tctgtaagaa agtcatccaa
      901 atacttggca acaaggcatc ttctaaatct tgtttgaggt cttgaaattc accgctttcc
      961 acaaaggcaa tggagtcctg tgcttcttcc aaccaatcct ctttcttgcc caaatccctg
     1021 accacctggt ccagcaaatc aaccttgtct gtcaactctt ctgcttgctg gttgattccc
     1081 cgctttttct cacgcaaggc tgactgcaag tcctcctctg gcaaggctag gagatcctta
     1141 atctctgcta gggaaaactc aagatagcgg agcaacttaa tcaagcgaag ctgacgcaca
     1201 ttttcctctg agtaatctcg gtagtcattg accggatttc tcgccacttc aatcaagccc
     1261 ttttcttcat acagccgtat cgccttagtt gacaaacctg tcaacttctc cacatctttg
     1321 acctgcataa gcaacctcca tctgttttga tagtcctagc atacactatt cccctaggga
     1381 tgagtcaagg attttttgat tttttataca aaaaaacagt cagctaattc ttgccgactg
     1441 ttttctggag attatatgaa aaagaaattt cgctatttct agcttgaata gagtataact
     1501 cgtcaaactt aaggaaaact aaaaaattct ctggaaaatc caaagaattt ttcttattca
     1561 gttatggtct caaataatgt gccgccacat atcctacaac gaaacctgca actgcagcta
     1621 ctaacatata tttctcctcc ttcataatat aatactcttt cttcaatttc ctattagttt
     1681 tgaatacaat aaacaataat tcctacaccg acaccgataa tgaatgctgg taccataaat
     1741 ttctcctttc taatttactc atattataaa gaatattgga ttttttcttt tattcctgat
     1801 agggaattac taaaatattt ccaccaatgt cccaagtaga gaatcaaggc caaactaatc
     1861 aggacaatcc accccaacag gtaatagaat tcttgattca aaagttcaaa atggggattt
     1921 ttgaaaaatt caatataagc tcctagaaaa ctatatttca aaatctgccc cactgtctca
     1981 ttcatcaaag acaggctagg tcccatagat actgccatag tgataagcat cgaggtaacc
     2041 tgtgacttgg attgagattg ggaagttgcc ccgattaaaa ggttgattag aatggaagcc
     2101 agtgatgtca aaagcatgat aaccgaatag ctaagaacat atcctgatac atcagcctgt
     2161 gtgatagctg gaaatagaat gaggtttaca aagctaatga caacaggata acacaaaata
     2221 gacagcacat attcacttgg gcgaacacct gtcagtaaca aggtagacag attattcttt
     2281 tccttttctt cagaaatcat tgcagatata ggacttccta ctgacatacc aatccccatt
     2341 gaaaaacaaa ttcccatcaa atccattgcc ttggtatcat ctgttttcat gacaaactta
     2401 aacagcaata acataaagta gggcatcaaa actggcaata gaatgttctt attggtcacc
     2461 aagacttgtg tacgaagcca aagcaaggct aaaaatcgtt tatacattta aggttgctcc
     2521 tgtctgttga ataaaaatgt cttccaaagt cggctcacaa gagtgaatag tggtcgcctg
     2581 aactaacttt tcaggtgtca attcactaaa caatagctca tcatcactac catcctcaaa
     2641 agtaaccctc acttttttag tgacattgta cttatgaatc aagtcctgcg gacttccttt
     2701 ttcaaccaaa tttccttgat tcaatagaac caattgatca cataagaatg tcgcttctgc
     2761 catatcatgc gtggtcaaga agatcgtcgt ccccttgcct tttagttcca ataaaagttc
     2821 atgaatccgc tttgaagttg ttggatccag accgcttgtc ggctcatcaa gaaacaatac
     2881 ttttggtgaa ttgatcaagg ctctggcaag caacattcgc tgtttcatac ctgtagatag
     2941 cttttctgca attgtctttt tactatccag caaccctact ttttgcagaa taacctctac
     3001 ttctttcgaa ctgacaccaa agaattttgc atagaacaac aaattatttt ccaaagtcat
     3061 cttctcgaaa aagccacttg aatcactgac caagcccatt gcttcaaagt cctctggtga
     3121 caataggctc gattctttac ctagtagata agattttccg ctatctgctg gtagctgccc
     3181 ggtaataatc ttaatcatgg ttgtctttcc cgagccagag ggacccaaga atccaaagat
     3241 ttgtccttct tgaatatcaa agctaatgtt gtctaaggca accttgtctc caaactgttt
     3301 atggatatgt tgaactgtta tcatactctg ttccatttct ctaatcccct ttgaataatg
     3361 cttgaggctg aaaagctaac tcactgacag cttctcccct cacttattta ttcgtaaaat
     3421 agttcaaaaa aatggaaatc catcgacccc cattcactaa ctggcttgcg gtaagcctct
     3481 taagaaatct tgatacagat gatttctctc cactaactgc tggtgatgac cgtagtcagc
     3541 cacttgtccg tttttatcta agaccagaat agcatctgct tcacgcaccg tatgcaaacg
     3601 gtgagcaatg gttagccttg ttttgccagc tgttaaccgg tcaatcgctt tactaatgac
     3661 acgttctgtg acagtatcta aacttgctgt cgcctcatct aacaaataaa tcggatgttc
     3721 tagcagcaag gctctcgcaa tgctaaaccg ttgtttttgg ccttccgaca aacctgtccc
     3781 attttctgaa atccgagtat ctaaaccatc ttccaactca gctactaaag aagacaatcc
     3841 caactccttg agaatataag caatacgctc ttcagacaca gactcgttct ttccatacaa
     3901 tagattttct ctaatcgttc catggaagag cgtattgtct tgtggtatga aggaaatcaa
     3961 ccttctcatc tccttggttg aaatatcact taagcattgt tgaccaatcc gaatctctcc
     4021 ttgatagtct tgataatatt tcatcagcaa agaaaaaatc gttgactttc cagctccgct
     4081 tggaccaaca atcgccacgt gagctccttc aggaattcta accgatactc cattcaaaac
     4141 cggatctgta tgataggaga accgaacatt ttccaactgg atactagcat catcaaccaa
     4201 ctctgtatct tcctgttctt ccttattcag ttccagcaat tctaccaaac gtttagacac
     4261 tgcatgaaac tccgtcagtt catttaggga agcagcaata tccgttactg gatcaatcaa
     4321 ttgcatcatg tacaatacaa aggtggtcaa ggtagccatg gtcatcactc ccttggttac
     4381 ttctatcccc gctataagca acatcaggat aataaatccc gtcatcaagc tactaaccaa
     4441 ggtatgttgg accgctgaca gtctaatcat tttctcaaag gtttgtgaca gatactgaaa
     4501 agacttgccc atctctcgct gttcatgctt ttctccctga aatgccttca tcaaacgaat
     4561 cgttgtaaat ttatgactaa ttctactaga aacctgccct aatccctctt gataagcaga
     4621 gtagtaacct tccaaccgct gattcattgg aatcataacc attgacaaca acggaagcaa
     4681 gaagagacta agacccgtga gccacggact gatggtccac agaaaataaa ttgaccccat
     4741 aaccatcaaa ccattcatca agaaatttgg aagaataacg gtgatgaagt tcagaacaac
     4801 cgacatatca ttggtcaaac gactagcaag atcgcctgat tggtactgat ccaagtcctt
     4861 tacagatgta gtcaacaagg attcataaat atattgttgc aaccgtttga gtgcattact
     4921 accactacgc cctatgaaat aattagatag agcctgtact gcatagaccg atacaaagaa
     4981 aaggatgaaa cctgccagca attctggccg tgttaataga ttgctcaaat aggtttgatc
     5041 tagcaaccta ccaataaact ggggcaggaa caaacccatt ccaaccccaa gtgcactcag
     5101 aactatccca aacaagaaca tcgttttatt gagcgacttc aacaacactc cgacgagtct
     5161 tttattcata actagaactc caaattcttg aattttttcg cagcaatttt agtaaatacg
     5221 agtacgtaaa caagcgttac accaatagcg cccaagtaag ccagccccgc tcctgtaaga
     5281 ccttcgttgg ccaaagctac ataactagtt ggaaaaagca tagcgattgg accgccaata
     5341 actgctaaaa tcatcatcgt aatcgttacc aaaaatccta taatcattgt ggtaatgttt
     5401 ttcaaatata ggcaaagagc agttgccaaa ctaactgaga gaatatcttt caatagatag
     5461 gcaacaatac caaatacatt acccaggctc tctgctaagc taacatcaaa aacagctgga
     5521 ctaccaaaag gcagatggat tacccgaaca taatgtacaa atgcagaggt tacaaagaag
     5581 aaaccataga aaatgacgat tgttgctagt agaccaagat atttagacca gaaaatctgc
     5641 ttccgcccaa gatcccgata caaaaacatg gtatgttcat ctacttcttt cctaaagaca
     5701 gatatagcca aaaaatacag ggtcaaacta ggaagaatga aactatctag cgagcttacc
     5761 atcatattcg tgaaggcaac tagaacaact ttgtagcctt ctccggcatg aatttgcata
     5821 aaattcgacc cttcaataaa tgaagtgact agatagataa aaggaaacaa agtgaacagg
     5881 agataaatct gcgtctcctt tcgcttccaa atcgttctaa agacagctgg aaaaatctgt
     5941 ttcatactca ctaccctttc gtaaagattt ctttcaagtg attctctttc acttctaatt
     6001 tcacaatcaa ttcttgacga gccaacacac caaaaatctg atttagctca cttgtaggcg
     6061 tggcagtgga aatctctagc acttccccct ctagcaccac atggtcattg agcaaagcct
     6121 ctacagaatc taggttttta gttgtgtcca actgcacgag cacacttgga tgagatttgc
     6181 cttcaaaagc ctctgccaat tctcccgatt cgatatagac atagcggctg cacaaggcct
     6241 ccaactcacc tagttggtga ctcgaaatca acatagaaat ttgtcgctca ctagaccact
     6301 gcttcaagat atcaatcaat ttctgaacac caatcgggtc caagcccaca aaaggctcat
     6361 ctaagatcag gaaatcgggc tccgcaacca aggcaatcgc caaagcagtc cgttgtttca
     6421 taccgaacga gaatcccttg ggtttccgat tgcgagcttc ccataattct accaatttca
     6481 aagtcttctc aatatttgga tagaggtctt tttttccatg caggtccaaa taaaacttga
     6541 ggttgtccat aacagtcatt tctggataga agacgggatc aatcataatt ccaaagtctg
     6601 ctaacaaatt atcctggcta aaaatatccg tacccttata agtaatggtt cccgaacttg
     6661 gttttaggga cttagccatt agtttcatga gcgtggattt tccagctccg tttttcccaa
     6721 tcagaccaac tatctcgccc ttattgatct ccaaactcac atcttttagt gagtaaaatt
     6781 cgtttcctgc aaactgtttt gataaatgat tgattttaag cataagtaac tcctttttct
     6841 ttctgacgac ttgtttgttg gataaagtat gtagcaatag ctacaccata atacactaca
     6901 gcaataaata acatttgtga tggaactaac aattctcctg ccagctcgac actcatgaca
     6961 tcatctgaaa ctgtatgcag ttgagcaaat tgagcccact gaccattgct actcgtaatg
     7021 taggcaaaag cggcataaaa tatcattgac attgttggaa aaatgcctgc tgaccacgct
     7081 ttccaagacc tatttttttg taatcccata cagattgaat tgacgatggg cggtagcaaa
     7141 taagtcaaca acaataaaac aggaacagag agacttagca atagttgcga actagcaact
     7201 gtcaaacaaa tataaaatag actcaataat agaataaata tcatcatgac cctcacaatt
     7261 aaaatggaaa tctcgaaacc aacagattgt agatccaatg tcctccgata gcatactgca
     7321 aaccaaaacg agtagctaag atagagaaca ataaacctag tggagttcgg atgattagat
     7381 tatccagcaa tggataattc atatgtagca aaactccaaa taagagagaa gtgaccaaca
     7441 tagctagcca agtagggtat tcacttttca gaatacggta gataagataa cgaaataaga
     7501 attcttcaca agtcgcaata atgaattggt tcacatattc ttcactttga ataaacaaag
     7561 aattgatgaa aaagatagca atggcaacaa gaagaaattc tttccaacta aactttatat
     7621 ccgccgtttc tttatagaac tgatagcgtt ttgtaagcca ggatggaagt agaataaacc
     7681 ctactggcat tccaaccata atagaaaata ggtaggctag ctgtaaaaat tgactggagc
     7741 taaataaaac caaagatgtt gccagaagat aagaaattga tgctaaaata atcaaagcaa
     7801 tggataaggc aactggcctc atataacgaa ttaccataac atacctctaa aattccaact
     7861 tttcaaagtt cgaacgacct ttaaaatagg tagcaacaat ataaaatgtc gttatagcta
     7921 ctaccaagga ccatgcaagc agtggctgat taaaactcat ccgagcatag ccatttggta
     7981 cgacataacg aactccaatc agaaatggtg cagttgttgt aaataacgac caaaaaactc
     8041 ctgctagaac tgcctgtaag gatttggctt taatagaaac cgtagcaacc aataaaacac
     8101 cgataatatt gatggagatt gttgcaaaaa tagatagcaa agtggactgt acattactcc
     8161 aatcattcga tactactttt ccagaagcat tcaagaagcc aaaataggca attgcacttg
     8221 tcagcactgt tagaaggaca taagaggcat acatcaccac taaactaatg atttttgcat
     8281 taaaaagtcg ggttctattc aaatctttgt ataaaaatag aatgccacta tcaatctcat
     8341 ccctaaaaac tgcggaaatt atcaaggata acagcaatgt tggtaacact atcccatcct
     8401 gtgttgacaa tgctgctcct agaaaatcta aaaaattatc cgtatattca gcctttacgc
     8461 ctaccaaaaa ttttgacaat ataggaacta agattggtaa accagcaaaa gcatagaaca
     8521 aagcaacatc tcttctataa ataactgatt taaaaattga cctaaacata ttcatattat
     8581 ttcccctttt ttatcaataa gataggcatt aaccaataat acccatctta ttgatagcta
     8641 aacaatatta gctatcaata agttt
//
LOCUS       DASGAC010000086         8598 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.086, whole genome shotgun sequence.
ACCESSION   DASGAC010000086 DASGAC010000000
VERSION     DASGAC010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8598
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.086"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            19..1095
                     /locus_tag="U1335_001424"
     CDS             19..1095
                     /locus_tag="U1335_001424"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEM5231891.1"
                     /translation="MTEKTIVFKVGTSSLTQENGSLDRIKIARITNQLAQLHQKGYQI
                     VLVTSGSIAAGFRRLGFDKRPTKIAEKQASAAVGQGLLIEEYTQNLMKDGIVSAQILL
                     TQDDFADARRYQNASQALQVLLKQRAIPIINENDTIAIEEIKVGDNDTLSAQVASLLK
                     ADLLVLLTDVDGLYTANPNSDPNAKHLPEIKEITEDLFAMAAGAGSSNGTGGMTTKLQ
                     AAQIATKSGVPVFICSSKEDTALLQAVTQANRGTLFLADDHAMNQRKQWMAFYARTDA
                     AVEVDAGAVDAMLHQGRSLLATGVKAFEGDFEVGQVVEVYSQADHRLIGKGRVKLSSK
                     DLQDQLANGRAEGVFIHRNDWVSL"
     gene            1105..2343
                     /locus_tag="U1335_001425"
     CDS             1105..2343
                     /locus_tag="U1335_001425"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEM5231892.1"
                     /translation="MTTTQALLDSLLVHKASINLATTEQKNQALYAMADQLVAQTDAI
                     LAGNAIDMENAQGKISQVMQDRLLLTAERIEAMADGIRALIGLPDPVGLVLQESTRAD
                     GLNICKKSIPFGLVGMIYESRPNVTSDAAALAIKSGNAVILRGGKESFHSAQAIVTAL
                     KAGLEEVGLSPKVIELVQDTSRASATELMTAKGKIDLLVPRGGAGLIQAVVENATVPV
                     IETGTGICHVYVDKDADLDKALQIVVNAKTSRPSVCNSAEVLLVHEAIASQFLPRLEE
                     ALSGQVELRADEKAQALLNQSTPAGEQDFDTEFLDYILAVKVVSSVEEAISHIAQHST
                     GHSEAIVTENSQTADRFTLHVDSAAVYVNASTRFTDGGEFGLGCELGISTQKMHARGP
                     MGLREMTTYKYIITGDGHIR"
     gene            2353..3138
                     /gene="proC"
                     /locus_tag="U1335_001426"
     CDS             2353..3138
                     /gene="proC"
                     /locus_tag="U1335_001426"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEM5231893.1"
                     /translation="MKIGFIGLGNMGAALAHAVSQQPDTQLLLSNHNPAKAQALQEKV
                     GGLLFSNGEIAEQAEVIFLGVKPHLIQTVLSGLQDQISQNPSAIWISMAAGVTLDSLA
                     AFVSEDKLIRIMPNTPVAIGQGMTTYSLVNQELAPLLEQILEKSGKVQQVPESLIDAA
                     TAIAGCGPAFVYQMIEALTDAGVQNGLTAQDAKVLAAQTLAGTAQMVLTSDKHPAQLR
                     QEVTSPGGSTIAGVVALEKEGFRYAIIKAVAAALKKTRKLGKK"
     gene            complement(3161..3565)
                     /locus_tag="U1335_001427"
     CDS             complement(3161..3565)
                     /locus_tag="U1335_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM5231894.1"
                     /translation="MAGRKISPQSLKNLYQSNKEANQLTKESIETALLFLLEKKELKQ
                     ISVSELVRKAGVSRNAFYRNYKSKEEILEDYYERTSSNLKKKWHDLQDKVQKDGVKQS
                     FADFVQEQKRKAEQSKALSNVSQWIKEKTKRD"
     gene            3692..4543
                     /locus_tag="U1335_001428"
     CDS             3692..4543
                     /locus_tag="U1335_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM5231895.1"
                     /translation="MTKWKIVADSGCDYRQLANLAPETEFISVPLTIQVGEQAFVDDA
                     SLDIDHMMEVMEASKSAAGSACPSPQAYQAAFEGAENIIVVTITGGLSGSFNAARVAR
                     DMYIEEHPNVNIHLIDSLSASGEMDLLVDEINRLIGAELDFPQVVEAITHYREHSKLL
                     FVLAKVDNLVKNGRLSKLVGTVVGLLNIRMVGEASAEGKLELLQKARGHKKSVTAAFE
                     EMKKAGYDGGRIVMAHRNNAKFFQQFSELVKASFPTAVIDEVATSGLCSFYAEEGGLL
                     MGYEVKA"
     gene            complement(4709..5650)
                     /gene="manA"
                     /locus_tag="U1335_001429"
     CDS             complement(4709..5650)
                     /gene="manA"
                     /locus_tag="U1335_001429"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase, class I"
                     /protein_id="HEM5231896.1"
                     /translation="MEPLFLTPVMHEKIWGGNRLRTNYHYDIPSDKTGECWAISAHPN
                     GVTTVSNGQFKGRGLDDLYKNEKHLFGNPTDDVFPLLTKILDADDWLSVQVHPDDSYG
                     LAHEGELGKTECWYILEAEEGAEIIYGHNAQSKEELRQQIEAGDWDKLLTHVPVKKGD
                     FFFVPSGTMHAIGKGILILETQQSSDTTYRVYDFDRRDDAGNLRELHIEKSIDVLTIG
                     PVANSTPAHLKAGNLDSTLLVANPFFTVYKWNIDQKIKMKQTVPYLLVSIIEGEGAIQ
                     VGETSYPLQKGSHFILPADVTDWTFTGQMDIIASHTN"
     gene            5868..6800
                     /locus_tag="U1335_001430"
     CDS             5868..6800
                     /locus_tag="U1335_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr kinase/phosphorylase"
                     /protein_id="HEM5231897.1"
                     /translation="MTVYVKDLVDNLRIECAYSTEELLQKQITTADITRPGLEMTGYF
                     DYYAPERIQLMGMKEWSYLMAMTAHNRYQVLSQMFQPETPVVIVARGLEIPEEMYKAA
                     KEKQIAICRSKTATSRLSGELSSYLDSRLAQRTSVHGVLMDIYGMGVLIQGDSGIGKS
                     ETGLELVKRGHRLVADDRVDVYAKDDVTLWGEPAEILRHLLEIRGVGIIDIMSLYGAS
                     AVKDSSEVQLAVYLENFETGKVFDRLGNSGDTIEIAGIAIPQIRIPVKTGRNISVVIE
                     AAAMNYRAKQMGFDATKIFEERLSNLIEHNREEA"
     gene            6775..7578
                     /locus_tag="U1335_001431"
     CDS             6775..7578
                     /locus_tag="U1335_001431"
                     /EC_number="2.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEM5231898.1"
                     /translation="MNTIEKRLNMDPIAVKLGPLEIRWYAICILLGLILGVYLATKEG
                     PRKKIRQDDILDFILIAFPLSIIGARIYYVAFSWSEYKDNILSIFAIWNGGIAIYGGL
                     ITGAIVLYFFTQYRFINTLDFLDIVAPSVMIAQAIGRWGNFFNQEAYGKAVESLNYLP
                     AFIRDQMYIDGAYRQPTFLFESLWNLLGFGLVCVLRRRPKFLKQGEITAFYLVWYGCG
                     RLLIEGLRTDSLMFLGIRVSQWLSGVLILVGIIMVVLRRRKSSIPFYQP"
     gene            7589..8002
                     /locus_tag="U1335_001432"
     CDS             7589..8002
                     /locus_tag="U1335_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF948 domain-containing protein"
                     /protein_id="HEM5231899.1"
                     /translation="MIIEISVLIIALSIAAVAVYIVLLLKKLGTVTDEAQQTLKVLTS
                     DVNVTLYQTNELLAKTNVLVEDVNGKVSTLDPLFVAVADLSTSVSDLNASARDLTVKA
                     KSAGASTVKAGGALSALSTLSSLLGKKGEKNGKKI"
     gene            7986..8522
                     /locus_tag="U1335_001433"
     CDS             7986..8522
                     /locus_tag="U1335_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HEM5231900.1"
                     /translation="MVKKSSSVWTSLLLGAAGGAAAAAFLASKTGKTVKEKVVNFAND
                     YKENHEEINADFVTKAQDLGKQATERFTEVKTQLETGELTVEDLVKSGKEKSLETFEQ
                     IKEKIAEQNLSTADILEAIKAKTAKAPTVDLTEEDIEDAVVVSEDIEIDIEDVQTEVV
                     SETVSEVASETASETVEG"
BASE COUNT         2362 a         1729 c         2131 g         2376 t
ORIGIN      
        1 tttttgtgag aaaagattat gacagaaaaa acgattgttt ttaaagtagg gaccagttcc
       61 ctgacccaag aaaatggcag tttggaccgg atcaagattg ctcggattac caatcagctg
      121 gcacagttgc atcagaaggg ctaccagatt gtgttggtga cttcggggtc cattgctgct
      181 ggttttcgga gattgggatt tgacaagcga ccgaccaaga ttgcggagaa acaggcttct
      241 gcggctgtgg gtcagggctt gctgattgag gaatacacgc agaacctgat gaaagacggg
      301 attgtgtcag ctcagatctt gttgacccag gatgattttg cggatgccag acgttatcag
      361 aatgcttctc aggccttgca ggtcttactg aagcagcgtg ctattccaat tatcaatgaa
      421 aatgacacca ttgccattga ggagattaag gtgggagata atgataccct gtctgctcag
      481 gtggcttctc tcttgaaagc ggatctcttg gtgcttttga cagatgtgga tggactttac
      541 acggccaatc ccaacagcga tcccaacgcc aaacatttgc cagagattaa ggaaattacg
      601 gaagacttat ttgctatggc ggcaggagca ggctcgtcca acggaacggg tggcatgacc
      661 accaaattgc aggcggcaca gattgcgacc aagtcgggag tacctgtctt tatctgctca
      721 tccaaggagg atacagccct tttgcaagcg gtcactcaag ccaaccgtgg caccctcttt
      781 ttagctgacg atcacgccat gaaccaacgc aagcagtgga tggccttcta tgctcggaca
      841 gatgcagcag ttgaagtgga tgcaggagcg gttgatgcca tgttgcacca ggggcgcagt
      901 ttgttggcta ctggtgtcaa agccttcgaa ggagactttg aagtgggcca ggtcgtagag
      961 gtttatagcc aagcagacca tcgtttgatt ggtaaaggtc gggtcaaact gtcctccaag
     1021 gacttgcagg accagttggc aaatggcaga gcggaaggcg tgtttattca ccgcaacgat
     1081 tgggtgagcc tataggagaa agatatgaca acaacacaag cattattaga cagtttattg
     1141 gtccataagg cctctatcaa tctggcaaca accgaacaaa aaaaccaggc cctatatgcc
     1201 atggcagacc agttggttgc tcagactgat gcaattttag ctggcaatgc tatcgatatg
     1261 gaaaatgccc aaggcaagat cagtcaggtc atgcaagata gattgctcct gactgctgaa
     1321 cgaattgaag caatggcaga tggcattcgt gccttgattg gcttgccaga tcctgtcggg
     1381 ctagtcttgc aagaatccac tcgggcagac ggcttgaaca tctgcaagaa atccattccc
     1441 tttggattgg tagggatgat ttacgaaagc cgaccaaacg tgacttcaga tgccgctgcc
     1501 ttggccatca aaagtggcaa cgcagttatc ttgcgtggag gcaaggaatc ctttcattcg
     1561 gcccaggcta ttgtcacagc cctcaaggct ggtttggaag aagttggcct atcacctaag
     1621 gtcatcgaac tagtccaaga taccagccga gcctctgcga cggaattgat gactgccaaa
     1681 ggcaaaattg acctcttggt accacgtggt ggtgcagggc tcattcaggc cgttgtggaa
     1741 aacgcaacag tgccagtcat tgaaacaggc acaggtatct gccatgtcta tgtagataag
     1801 gatgcggact tggacaaggc tctgcagatt gtggtcaatg ccaaaaccag tcgcccatct
     1861 gtatgtaatt cggctgaagt cttgctagtt catgaagcaa ttgccagcca attcctacct
     1921 cgcttggaag aagctctttc tggtcaggta gaattgcggg ctgacgagaa ggctcaggct
     1981 cttctcaacc aatctacacc ggcaggtgag caggattttg atacagaatt tctggactat
     2041 atcttggcgg tcaaggtcgt ttcaagtgta gaagaggcta tcagccatat cgctcaacac
     2101 tcgacagggc acagcgaggc tatcgtgacg gaaaacagcc aaacggcaga tcgtttcaca
     2161 ctccatgtag attcggcggc ggtctacgtc aatgcctcga ctcgcttcac agacggcggc
     2221 gagtttggtc tgggctgtga gctgggtatt tccacccaga agatgcacgc ccgtggtcca
     2281 atgggcctgc gtgagatgac cacttacaag tacatcatca caggcgacgg ccacattcgt
     2341 taggaggaca agatgaagat tggatttatc ggactgggca acatgggagc ggccttggct
     2401 catgcagtca gtcagcagcc agacacccag ctcctcctca gcaaccataa cccagcaaaa
     2461 gcccaggctc ttcaagagaa ggtaggcggt ctgctttttt ctaatgggga aatagcagag
     2521 caggccgagg tcattttcct tggggtcaag cctcacctga ttcagacagt cttgtcaggc
     2581 ttgcaggacc agattagcca gaatccgtca gctatctgga tttccatggc agcgggtgtg
     2641 acccttgaca gcctggcagc atttgtatcg gaagacaagc tcatccgcat catgcccaac
     2701 acacctgtcg ctatcggtca aggtatgaca acctatagct tggtcaatca agagctcgct
     2761 ccgctattgg aacaaatcct agaaaaatca ggcaaggtcc agcaagtgcc agagagccta
     2821 atcgacgcag caacggctat cgcaggctgc ggaccagcct ttgtctatca gatgattgag
     2881 gctttgaccg atgccggtgt gcaaaacgga ctgacggctc aagatgccaa ggttctggct
     2941 gcacaaacct tggctggaac tgctcagatg gtcttaacca gcgataaaca cccagcccag
     3001 ctgagacagg aagtgacttc gccaggcggc tcgactatcg caggcgtggt agctcttgaa
     3061 aaagaaggct tccgttacgc cattattaag gcagtcgctg ccgccctcaa aaagacgaga
     3121 aaattgggta aaaaatagaa gacagcaaaa aacgggactt ttaatcccgt tttgtttttt
     3181 ccttgatcca ttgactgacg ttggacaggg ccttgctttg ctctgccttg cgtttttgtt
     3241 cctggacaaa atctgcaaag ctttgcttga cgccgtcctt ttgaaccttg tcctgcaaat
     3301 catgccattt ctttttaagg ttgctggaag tccgttcgta gtagtcttca aggatttctt
     3361 ccttggactt gtaattgcgg tagaaggcat tgcgtgacac accagctttt cggaccaatt
     3421 cagataccga aatttgcttg agctcctttt tctctaggag aaatagcaga gcagtttcta
     3481 ttgattcctt agtcagttga ttcgcttctt tatttgattg atagaggttt ttcaaagatt
     3541 ggggtgaaat tttacgacct gccatagttt tccttttccg agtgtcacat ctgaaagaaa
     3601 atgctttcag atagggtagt ttaatgatat aattgtaagt aaatagagat ttattgtcaa
     3661 ataaaaaagt aaaattggaa atgagaatat tatgacaaaa tggaaaattg ttgcagattc
     3721 gggctgcgac tatcgtcaat tagctaatct agctccggag actgaattta ttagtgtgcc
     3781 acttaccatc caagttggag aacaagcatt tgttgatgat gcaagcttgg atattgatca
     3841 catgatggag gtgatggaag catctaagtc tgcagcgggg tctgcgtgcc caagtccgca
     3901 ggcttatcag gcagcttttg agggagctga gaacattatc gttgtgacga ttacaggagg
     3961 gctatcgggt agttttaatg cggcacgtgt agctagggat atgtatatcg aagagcatcc
     4021 gaatgtcaat atccatttga tagatagttt gtcagccagt ggggaaatgg atttacttgt
     4081 tgacgaaatc aatcgcttaa ttggtgcaga attagatttt ccacaagtag tagaagcgat
     4141 aactcactat cgggaacaca gtaagctcct ctttgtttta gcgaaggttg ataatcttgt
     4201 taagaatgga agactgagca aattggtagg cactgtcgtt ggtcttctca atatccgtat
     4261 ggttggtgag gcaagtgctg aaggaaaatt agagttgctt caaaaggcgc gtggtcataa
     4321 gaaatctgtg acagcagcct ttgaagaaat gaaaaaagca ggttatgatg gtggtcgaat
     4381 tgtcatggcc caccgcaaca atgctaagtt cttccaacaa ttctcagagt tggtaaaagc
     4441 aagttttcca acggctgtta ttgacgaagt tgcaacatca ggtctatgca gtttttatgc
     4501 tgaagaaggt ggacttttga tgggctatga agtgaaagcg tgattcacag agtaatactc
     4561 aatgaaaatc aaaagtagcc taggaaacga agtcgaagat agaactctgt tactatctta
     4621 tttcaaggta acaggctgaa aacctccact ggagcttttc actcatcaag gcaagttgac
     4681 aacggataat tttgattttc gaagagtatt agtttgtgtg acttgcgatg atgtccattt
     4741 ggcctgtaaa ggtccagtct gtcacatcgg ctggtaagat aaagtggctt cctttttgaa
     4801 gtgggtagct ggtttcgccg acttggatgg caccttcccc ttcaatgata ctgaccagta
     4861 ggtaaggtac tgtctgtttc attttgattt tttggtcaat attccattta tatacggtaa
     4921 agaagggatt ggcaaccaga agtgtcgagt caagattgcc tgctttgagg tgggcaggtg
     4981 ttgagttagc aacaggtccg atggtcagta catcaatcga tttctcaatg tgtagttcac
     5041 ggaggttgcc tgcgtcgtca cggcggtcaa agtcatagac acggtaggtt gtatcactag
     5101 attgttgggt ttctaaaata aggattcctt taccgatggc gtgcatggtg ccgcttggta
     5161 caaagaagaa atcacccttt ttgacgggta catgggttaa caacttgtcc caatctccgg
     5221 cttcgatttg ctgacggagt tcttctttgg attgggcatt gtgaccataa atgatttcag
     5281 cgccttcctc ggcttctaaa atgtaccaac attctgtctt gcccagttcc ccttcgtgag
     5341 ctaagccata gctatcatcg ggatggactt ggacgctaag ccaatcgtct gcatcaagga
     5401 tttttgttaa caatggaaag acatcatctg ttggattgcc aaataaatgt ttttcattct
     5461 tatagaggtc atccagtcct cttcctttaa attgaccgtt tgagacagta gttacgccat
     5521 ttggatgggc agaaatagcc cagcattcac cagtcttatc actaggaatg tcgtagtggt
     5581 agttggtcct taagcgattg cccccccaaa ttttttcgtg cataacaggt gtgagaaata
     5641 atggttccat gatgttctcc ttaatagtaa gtattaatct atatatagta taacagattt
     5701 gttaaaaata tgtagcaatg gaagagaagt gcatttaatc tgtggaagtt ttgctaattt
     5761 tgtgagaaaa aggaagaaac tcattctttt taccaaatca gccacttgtt tttccaccaa
     5821 cccctagctt atggtataat ataataaaac tgaaagtgag ggaagaaatg accgtttatg
     5881 tgaaagattt ggtcgataat ctgcggattg aatgtgctta cagtacggaa gagctcctac
     5941 aaaagcaaat tacgacggca gatattaccc gaccaggatt ggaaatgact ggctattttg
     6001 attactatgc tccagagcgc atccagttga tggggatgaa ggagtggtct tatttgatgg
     6061 ccatgactgc ccataaccgc tatcaggttc tttctcagat gttccagcca gaaacccctg
     6121 ttgtcatagt ggcacgtggc ttggaaatcc ctgaggagat gtacaaggct gcaaaagaaa
     6181 aacaaattgc tatctgccga agcaagacag caaccagccg tctatcggga gaattgtctt
     6241 cttacttgga tagtcgcctg gctcagcgga cgagtgtaca cggtgtcttg atggacattt
     6301 acggaatggg tgtgcttatc cagggtgatt ctggtatcgg taagagtgag actggtcttg
     6361 agttggttaa acgaggacac cgattggtgg ctgacgaccg tgttgatgtc tatgcaaaag
     6421 acgatgtcac tctctggggt gaacctgcgg aaattctgcg acacttatta gagattcgag
     6481 gagtcggcat tatcgacatc atgagtctat acggtgctag tgccgtgaaa gattcatcag
     6541 aagtgcaatt agctgtctat cttgaaaatt ttgaaacagg taaggtattt gaccgtttgg
     6601 gaaactctgg cgatactatc gaaatagcag gaattgctat tccacaaata cgtattcctg
     6661 taaaaaccgg tcgaaatatt tctgtcgtaa ttgaagcagc agccatgaac taccgtgcca
     6721 aacagatggg gtttgatgca acgaagatct tcgaagaacg cttgtccaat ctaattgaac
     6781 acaatagaga agaggcttaa tatggatcct attgcggtta aattaggtcc cttagaaatt
     6841 cgttggtatg caatctgcat tttgcttggt ctgattctag gtgtttatct ggcgacaaaa
     6901 gagggtccgc gaaagaaaat tcgtcaggat gatattttag attttattct aatcgcattt
     6961 ccgctttcta tcataggggc acggatttac tacgtcgcct tttcatggag tgaatataag
     7021 gataacattt tatctatctt cgctatctgg aacggtggta ttgccatcta tggtggtttg
     7081 attacaggtg caatcgtcct ttatttcttt acccagtatc gctttattaa taccctggat
     7141 tttttggata ttgtagcgcc atcggtcatg attgctcagg caattggtcg ttggggaaat
     7201 ttctttaacc aagaggccta tggtaaagca gtagaaagtt tgaactacct gccagccttt
     7261 atccgagacc agatgtatat tgatggtgcc taccgtcaac caaccttctt gtttgagtct
     7321 ctctggaatt tgttaggctt tggcttggtt tgtgtgttac gtagacggcc aaaattcctt
     7381 aaacagggag aaataacggc tttctaccta gtctggtatg gttgtggtcg ccttttgata
     7441 gaaggcttgc ggacggacag cctcatgttc ttgggaatac gtgtttcaca atggctatct
     7501 ggggtgttaa tcctcgttgg tattatcatg gttgtgttgc ggagaagaaa gtcttctatt
     7561 ccattctatc aaccctaaag gagaagatat gattattgaa atttctgtct tgattattgc
     7621 cttgtccatc gcggcggtgg cagtatatat tgttttgttg ttgaaaaaat tgggtacggt
     7681 aacagatgaa gcccagcaaa cgcttaaggt cttgaccagc gatgtcaatg tgactctcta
     7741 tcagaccaac gagcttttgg ctaaaaccaa tgtcttagtc gaagatgtaa atggcaaggt
     7801 ttcgaccctt gatcctcttt ttgtagcagt agctgacttg tcaacttctg tatctgattt
     7861 gaatgcttca gcgcgtgatt tgacagttaa agctaagtct gctggagcaa gtactgtaaa
     7921 agccggcgga gctctttcag ctctgtcaac tctctcatct ctcttaggta agaaaggaga
     7981 aaaaaatggt aaaaaaatct agtagcgtgt ggactagcct tttgttaggg gcagcaggcg
     8041 gagctgctgc agctgctttt ctagcaagta aaactggtaa aacagtcaaa gaaaaagttg
     8101 taaactttgc taatgactat aaagaaaacc atgaagaaat caatgctgat tttgtcacta
     8161 aggcacaaga tttaggcaaa caagcgactg aacgatttac cgaagtaaaa actcaacttg
     8221 aaactggtga attgacagta gaagatttgg tcaagtctgg taaggaaaaa tccttggaaa
     8281 cctttgagca aatcaaggaa aaaattgcgg aacaaaactt gtcaacggct gacattttgg
     8341 aagctatcaa ggcaaaaact gctaaagctc cgacagtgga tttgacagaa gaagatattg
     8401 aggatgctgt agttgtgtct gaagatattg aaattgatat cgaagatgtt caaactgaag
     8461 tggtatcaga aaccgtttca gaagtagcaa gcgaaactgc ctcagaaaca gttgaaggat
     8521 aaaatgaaac tagcttagaa ttttctaggc tagttttgtt atctgattat catttgtttt
     8581 gtgtaaatta aaagcaga
//
LOCUS       DASGAC010000087         8558 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.087, whole genome shotgun sequence.
ACCESSION   DASGAC010000087 DASGAC010000000
VERSION     DASGAC010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8558)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8558)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8558
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.087"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(191..1531)
                     /locus_tag="U1335_001434"
     CDS             complement(191..1531)
                     /locus_tag="U1335_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HEM5231901.1"
                     /translation="MRTSFIQAQHQEACVEAIKELVAFPSVLHEGQNQTPFGQAIQDV
                     LEHTLALTEKMGFKTYLDPAGYYGYAEIGQGEELLAILCHLDVVPAGDLSQWQTSPFE
                     AVVEGDYIIGRGVQDDKGPSMAALFAVKALLDAGVQFNKRIRFIFGTDEETLWRCMNR
                     YNQLEEVATMGFAPDSSFPLTYAEKGLLQAKLHGPGHPCLSIEAGTAYNVVPAKASYS
                     GHLLAGVIAELDQLGFDYETKDDQVTVLGISRHAKDAAEGVNAIVRLAKALEHFENHP
                     ALDFIVNAVGEDATGFKLFGDVTDEPSGTLSFNIAGLTISAKKSEIRLDIRIPVTADK
                     EALVSTLQAKAQSCGLTYEEYDYLASLYVPLDSQLVSTLMSVYQDKTGDLTSEPISSG
                     GATFARTMPNCVAFGACFPDTEQTEHQENERMPLEDLYKTMDIYAEAVYRLAAE"
     gene            complement(1649..3154)
                     /locus_tag="U1335_001435"
     CDS             complement(1649..3154)
                     /locus_tag="U1335_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcC family protein"
                     /protein_id="HEM5231902.1"
                     /translation="MSEKVKKGFKMPSSYSILMLIIAFMAVMTWVIPAGQYEKDEAGK
                     FITGTYQAVAQNPQGIWDILMAPVRAMLGHGDTSKAIDVAFFILMVGSFLGVVNETGA
                     LDVGIASIVKRFKGREKMLIYILMPLFALGGSTYGMGEETMAFFPLLVPVMMAVGFDS
                     ITGVAIILLGSQIGCLASTVNPFATGVASDAAGVSLADGMIWRIIFFIVILGLGVWFV
                     ANYAEKVKNDPTKSLVYKQREADMAHFNVNTSNEEVNAVLTPAQKRVLWVFVLTFVVM
                     ICSFIPWEDLGVSVFADFNTWLLGLPGIGQVIGSSAYPFGWWYFPEGAMLFALAGVLV
                     GIVYGMDEARLVKAFMNGAADLLSVALICAVARGIQVIMNDGMITATILHWGEVGLQG
                     LSSQVFIILTYLFYLPMSFLIPSTSGLAGASMGIMAPLGEFVNVPAHLIITAFQAASG
                     VLNLVAPTSGIVMGALALGRVEIGTWYKFVGKLIAAIVLASIAILVIATFF"
     gene            complement(3498..4445)
                     /gene="arcC"
                     /locus_tag="U1335_001436"
     CDS             complement(3498..4445)
                     /gene="arcC"
                     /locus_tag="U1335_001436"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003025409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HEM5231903.1"
                     /translation="MANRKIVVALGGNAILSSDPSAKAQKEALVQTAKHLVKLIKNGD
                     DLIITHGNGPQVGNLLLQNLAADSEKNPAFPLDSLVAMTEGSIGFWLQNALENELHKE
                     GIEKDVASVVTQVIVDKNDPAFENLTKPIGPFYTEEEAKAEAEKTGATFKEDAGRGWR
                     KVVASPKPVGIKEIGTIRTLLNAGEVVVAAGGGGIPVVQEADGTLTGVEAVIDKDFAS
                     QCLAELVDADLFIVLTGVDYVFVNYNKPDQEKLETVTVAELEEYIKQNQFAPGSMLPK
                     VEAAIAFVNNKPQSKAVITSLENLGALIESDSGTIIVKG"
     gene            complement(4759..5772)
                     /gene="argF"
                     /locus_tag="U1335_001437"
     CDS             complement(4759..5772)
                     /gene="argF"
                     /locus_tag="U1335_001437"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000195397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEM5231904.1"
                     /translation="MTNVFKGRHFLAEKDFTRAELEWLIDFSAHLKDLKKRNIPHRYL
                     EGKNIALLFEKTSTRTRAAFTVASIDLGAHPEYLGANDIQLGKKESTEDTAKVLGRMF
                     DGIEFRGFSQKMVEELAEFSGVPVWNGLTDAWHPTQMLADYLTVKENFGKLEGLTLVY
                     CGDGRNNVANSLLVTGAILGVNVHIFSPKELFPDETVVALAEGFAKESGARVLITDNA
                     DEAVKGADVLYTDVWVSMGEEDKFAERVALLKPYQVNMELVKKAENENLIFLHCLPAF
                     HDTNTVYGKDVAEKFGVEEMEVTDEVFRSKYARHFDQAENRMHTIKAVMAATLGDPFV
                     PRV"
     gene            complement(5791..6231)
                     /locus_tag="U1335_001438"
     CDS             complement(5791..6231)
                     /locus_tag="U1335_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5231905.1"
                     /translation="MPSIARTTIGSEEWQRAASIYVRYKVFVLERGIAKEDEFDQNDT
                     EGRVYANLFIGEEPVSTGRFLPVGPGQARLTRIATLPNFRGKGYGKMVISSLEAYARE
                     AGFHQLNIHSELTAKTFYESVGYQATSEVYQEDGEWCQTLTKFI"
     gene            complement(6231..7463)
                     /gene="arcA"
                     /locus_tag="U1335_001439"
     CDS             complement(6231..7463)
                     /gene="arcA"
                     /locus_tag="U1335_001439"
                     /EC_number="3.5.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012560827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase"
                     /protein_id="HEM5231906.1"
                     /translation="MMSNHPIHVFSEIGKLKKVMLHRPGKEIENLMPDYLERLLFDDI
                     PFLEDAQKEHDAFAQALRDEGVEVLYLEKLAAESLVTPEIREQFIDEYLEEANIRGRA
                     TKKAIRKLLMSIEDNQELVEKTMAGVQKAELPEIPSEEKGLTDLVESSYPFAIDPMPN
                     LYFTRDPFATIGNAVSLNHMYSETRNRETLYGKYIFTHHPEYGGKVPLVYNREATTRI
                     EGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFEQHVGFKKVLAFEFANNRKFMHLD
                     TVFTMVDYDKFTIHPEIEGDLRVFSVTYENDTLHIEEEHGDLAELLAANLGLEKVELI
                     RCGGGDMVAAGREQWNDGSNTLTIAPGVVVVYKRNTITNAILESKGLRLIKIGGSELV
                     RGRGGPRCMSMPFEREDI"
     gene            complement(7720..8415)
                     /locus_tag="U1335_001440"
     CDS             complement(7720..8415)
                     /locus_tag="U1335_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM5231907.1"
                     /translation="MISNEQYDYLRAHPTFERLTRDSFDQLAKHIRFRKIPKGQIFFY
                     AEDPRDYLFVLYKGYARIEQYDETDSFTYLDYIRQGGAFPFGDMFQDKPYHYTAIAIT
                     DLEYFIVPMVLFETLSKINPSQMAYICQKLSKVLRFQELRLRNAMRSKASDRVVQALA
                     LLYWDMCQREQFATLPFEIHIQEISRLAATTRETVSYVLKQLKQDGKIAYSHKQLTYL
                     DIDYFLENLTETH"
BASE COUNT         2579 a         1947 c         1585 g         2447 t
ORIGIN      
        1 tctatatgca gatggggtct atttctaaaa cagcatataa taagtcacac tttcatatat
       61 ttttgtacac ttcttgtaaa cagtgacaca tttctatctc atctttcaat gatattcttc
      121 ataagaaaag cccttagata tttcactaag agcttttaaa ctgtaatcta ctattcaatg
      181 ctgataatgg ttattccgca gctaggcgat agactgcctc agcataaata tccattgttt
      241 tatataagtc ttctaatggc atgcgttcat tttcctgatg ctctgtttgt tctgtatctg
      301 ggaaacatgc accaaaggcc acacagtttg gcatggtacg agcaaaggta gccccacctg
      361 acgagattgg ctcgcttgtt aaatctcctg tcttatcttg ataaacagac atgagcgtag
      421 ataccagctg gctgtctaat ggcacataca aggaagcaag gtagtcgtac tcttcatagg
      481 tcaagccaca tgattgcgct ttggcttgta aagtagaaac tagggcttct ttatccgcag
      541 tgacaggaat acgaatgtcc aagcgaattt ctgatttttt tgcgctaatg gttagacctg
      601 caatattgaa actgagtgtc cctgatggtt catcggtcac atcaccaaaa agcttaaatc
      661 ctgtggcatc ttcaccaact gcattgacga taaagtccaa ggctggatga ttttcaaaat
      721 gttccaaagc ctttgccaaa cgaacaatgg cattgacccc ctcggcagca tccttggcgt
      781 gccgcgaaat accaagaacc gttacttgat catctttggt ttcataatca aagcctaatt
      841 gatctaattc cgcaataact cctgctaata aatgaccaga atagcttgcc ttggcaggta
      901 ctacgttata ggcagttccc gcttcgatac tcagacaagg gtgacctgga ccatgcaatt
      961 tggcctgtag caatcctttt tcagcataag tcaaagggaa ggaagaatct ggtgcaaagc
     1021 ccatagttgc cacttcttcc aactgattgt agcggttcat acaccgccat aaggtctctt
     1081 catctgttcc aaaaatgaaa cgaatccgtt tgttaaattg gactcccgca tcaagaagtg
     1141 cttttactgc aaataaggcc gccatcgaag gacctttatc atcctgaacc ccgcgtccaa
     1201 taatataatc tccctctacc acagcttcaa aaggcgacgt ctgccattga ctaagatcac
     1261 cagcaggtac cacatctaag tggcaaagga ttgctaataa ttcttcgcct tgcccaattt
     1321 cagcatagcc ataatagcca gcagggtcta aataagtttt aaaacccatt ttttccgtca
     1381 aagccaacgt gtgctccaga acatcctgaa tcgcttgacc aaatggtgtt tggttttgac
     1441 cttcatgcag gacagacgga aaagctacca gttccttaat cgcctctaca caagcctctt
     1501 gatgctgtgc ttgaataaaa cttgttctca ttgtgtcccc tttcaacata ataagatatg
     1561 atatattttc tagcactatt ctatcataaa aggaaaaact gagccaaatt tatctgtatt
     1621 catgataaaa tctgacccag aatttcgatt agaagaatgt cgcaatgaca agaatagcaa
     1681 ttgatgcaag tacaatagct gcaatcaatt tacctacaaa tttataccaa gttccgattt
     1741 caacacgacc taaagccaag gctcccatta caatacctga ggttggtgcc actaagttca
     1801 gcacacctga agccgcttgg aaggctgtga taatcaagtg agctggtaca ttgacaaact
     1861 caccgagagg tgccatgata cccatggatg cccctgcaag accagatgtg gatggaatca
     1921 agaaggacat tggcaggtag aagagatagg tcaagatgat gaagacttgt gaagacagac
     1981 cttgcaagcc aacttcaccc caatgcagaa tagtcgctgt aatcataccg tcattcatga
     2041 taacttgaat accacgcgcc accgcacaga taagggcaac actgagcaaa tcagccgcac
     2101 cattcataaa ggccttcacc aaacgcgctt catccatgcc atagacaata ccaaccaaga
     2161 caccagcaag tgcaaagagc atagctcctt cagggaaata ccaccagcca aatggatagg
     2221 ctgaactacc aatcacctga ccgattcctg gcaagccaag taaccaggtg ttaaaatctg
     2281 caaagacaga aacacccaag tcttcccaag gaataaagct acaaatcatg actacaaaag
     2341 tcaatacgaa gacccaaagg acacgttttt gagcaggcgt taagacagca ttgacttctt
     2401 catttgatgt gttgacatta aagtgagcca tatctgcttc acgttgtttg taaacgaggg
     2461 atttagttgg gtcgtttttt actttttcag catagttggc aacgaaccac acacccagac
     2521 ccaaaataac gataaagaag ataatccgcc atatcatacc atcggccaag gaaacccctg
     2581 ctgcatccga agccacacct gtcgcaaatg ggtttacagt cgaagccaaa cagccgattt
     2641 gagaacccaa caagataata gcaacacctg taatactatc aaaaccaact gccatcataa
     2701 caggaactag gagtgggaag aaagccatgg tttcctcacc cataccgtag gtagaaccgc
     2761 ccaaggcaaa caaaggcatg agaatgtaaa tcagcatttt ctcgcgaccc ttgaagcgtt
     2821 tcacaatgga ggcaatcccc acatcaagcg caccagtttc attgaccacg cctaagaaag
     2881 aaccaaccat cagaataaag aaggcaacgt caatagcctt actagtgtcg ccatgaccca
     2941 acatagcacg gacaggtgcc atcagaatat cccaaattcc ctgcggattt tgagccactg
     3001 cttgataggt gcctgtgata aattttccag cttcgtcttt ttcatactga cctgctggaa
     3061 taacccatgt catcactgcc ataaaggcaa taatgagcat caaaatagaa tacgatgaag
     3121 gcattttaaa gccttttttc actttttcgc tcatcgcaaa aacctcctat aatattttga
     3181 aagtttatcc cctatttaag ggaaattgta tccgtaataa ccgtatcaaa tatccaccta
     3241 tcttcaagag atgtctatct ccttcagtct attatctgaa atcattgctt atagatagat
     3301 acttgatagg aaatggatga gaggggaggg agcttagaaa gcccagacct tcatgtttag
     3361 attaaaggga acccttgtag gactatcaac acttccactc ccctaactcc atcaataaat
     3421 aacccgtcta gtttaaaaac tatatttgca tgtagagtac atcaataaag agaaacctca
     3481 acgatacaaa cagctactta gcctttgaca atgatagtgc cgctatcgga ttcaatcaaa
     3541 gcgcctaagt tttctaatga ggtaatgact gcttttgatt gcggcttatt gtttacaaaa
     3601 gcaatagctg cttcaacttt cggtagcatg gaacctggtg cgaattgatt ttgtttgata
     3661 tattcttcca attcagctac ggtaactgtt tctaattttt cttggtctgg tttgttgtag
     3721 ttaacaaaga catagtctac accggtcaag acgataaaca agtctgcatc aaccaattct
     3781 gccaaacatt gagaagcaaa gtccttatcg ataactgctt ccacaccggt cagggtgcca
     3841 tctgcttctt ggacaactgg aatacctccg ccaccagcag ctacgactac ctcacctgca
     3901 ttgagaaggg tacgaatggt acctatttct ttgattccta caggttttgg cgaagcaacg
     3961 actttgcgcc agccacgacc ggcatcttct ttgaaggttg caccagtctt ttctgcttct
     4021 gctttcgctt cttcttctgt atagaatggt ccaatcggct tggtcaaatt ttcgaaggcg
     4081 ggatcattct tatccacgat aacctgggtg acaacagatg ctacatcttt ttcaatgcct
     4141 tccttgtgca attcattttc caaggcattt tgcaaccaga aaccaatcga accttctgtc
     4201 atggctacca aactgtctag tggaaaagct gggttctttt ccgaatcagc agcaaggttt
     4261 tgaagaagta agtttccaac ctgaggacca ttaccatgcg tgataataag gtcgtcccca
     4321 ttttttatca attttacaag gtgcttggct gtttgtacca aggcctcttt ttgtgcttta
     4381 gccgatgggt cggacgataa aatggcattg ccacccaagg ctactacaat tttacgattt
     4441 gccatatctc ttgctttttc ctcactttcg cgaaatagta atcgcttaca catctatcct
     4501 caaaatatgg gggctgggtg ccagcccccg gaggttgcaa tgactagaga atatactcaa
     4561 tgaaaatcaa aatcagactt gcttcaaagg ttcggggaac ctttggaggt tggaaataga
     4621 gcgagcgaag ttcgcttcac atatgaagat agaactccgt tcctttcata cttcaaggga
     4681 acaggctgaa aacctccact ggagcttttc agtcatcaaa tcgaggcaac aacgtatgag
     4741 tttgattttc gaagagtatt acacacgtgg aacaaatgga tcccctaaag tagccgccat
     4801 cactgcttta atagtgtgca tacggttttc agcttggtcg aagtgacgag catacttgct
     4861 acggaatact tcgtctgtta cttccatttc ttctacaccg aatttttcag cgacatcttt
     4921 accataaaca gtgtttgtat catggaaggc tggcaagcag tgcaagaaga tgagattttc
     4981 attttctgct tttttcacca attccatatt cacttggtat ggtttcaaga gggcaacgcg
     5041 ttcagcaaat ttgtcttcct cacccattga tacccaaacg tctgtataga gaacatctgc
     5101 gcctttaact gcctcgtcag cattgtcagt gataagaaca cgcgcgccac tttctttggc
     5161 aaagccttct gccaatgcca caacagtttc atctgggaag agttcttttg gagagaagat
     5221 atgaacattg acaccaagga tagcgcctgt taccaaaagt gagttagcaa cgttgttccg
     5281 gccatcacca cagtaaacca gagtcaagcc ttccaacttg ccaaagtttt ctttaacagt
     5341 caagtagtcc gccaacattt gagttgggtg ccatgcatct gtcaaaccat tccatactgg
     5401 cacaccagag aattctgcca attcttccac cattttttga ctgaaaccac ggaattcaat
     5461 accgtcgaac atacgtccca aaactttagc agtatcttct gtagattctt tcttaccaag
     5521 ttggatgtca tttgcaccaa gatattctgg atgggcacca aggtcaatag atgctactgt
     5581 gaaggcagca cgagtacgtg ttgatgtttt ttcaaacaag agagcaatat ttttaccttc
     5641 caaataacgg tgtggaatat tgcgtttttt caaatctttc aaatgagctg agaaatcaat
     5701 caaccattcc aattctgcgc gtgtgaaatc tttctctgca agaaaatgtc tacctttaaa
     5761 tacgtttgtc attgtctctt ctcctaatgt ttaaataaat tttgtcaatg tctggcacca
     5821 ttctccatct tcttgataaa cttcagaagt tgcttggtag ccaactgact cataaaaagt
     5881 ctttgcagtt aactccgaat gtatattcaa ctgatgaaag cctgcttcac gtgcataagc
     5941 ttccaaagag ctgataacca tttttccata gccttttcca cgaaaattcg gtagagtggc
     6001 tattcgagtt agacgagctt gaccaggacc gacaggaaga aaacgtcccg ttgaaacagg
     6061 ctcttcacca ataaagagat tggcgtaaac tcttccttcc gtatcattct ggtcaaattc
     6121 atcttccttt gcaataccac gctcaaggac aaatacctta tagcggacat agatagaggc
     6181 tgcgcgttgc cattcttccg aaccgattgt tgttcgtgct atacttggca ttagatgtct
     6241 tcccgttcaa acggcattga catacaacga ggtccgccac gaccgcgaac caattcgctt
     6301 ccgccaatct taatcaaacg aagccctttg gactcgagga tagcattggt aatcgtattg
     6361 cgtttgtaaa caactaccac acctggtgca atagtcaatg tatttgaacc atcattccat
     6421 tgctcacgac cagcagcaac catatcaccg ccaccacaac gaatcaattc tactttttca
     6481 agaccaaggt tcgcagccaa aagttctgcc aagtcaccat gttcttcttc aatatgaagc
     6541 gtatcatttt cataggttac agagaagaca cgaaggtcac cttcaatttc tgggtggata
     6601 gtaaacttat catagtcaac catggtaaat actgtatcca agtgcatgaa tttacggttg
     6661 ttagcaaatt cgaatgccaa tactttcttg aagccaacat gctgttcaaa gatatttacc
     6721 aatagttttt caattgatgc agcgtcagta cgttgtgaaa tacctactgc caaaacatct
     6781 tttgaaagaa ccaattcgtc accaccctct atacgagtag ttgcttcacg attgtaaacc
     6841 aatggaactt ttccaccata ttctgggtga tgggtgaaga tatatttacc atacaaggtt
     6901 tcacggttcc gtgtttctga atacatgtgg ttaagagaaa cagcattacc aatcgtagca
     6961 aatggatccc gtgtgaagta aaggtttggc attgggtcta ttgcaaatgg gtaagaggat
     7021 tcaaccaaat ctgtcaaacc tttttcttca gaagggattt ctggcaattc tgccttttga
     7081 acaccagcca tcgttttctc aaccagttct tgattatctt caatagacat caacaacttg
     7141 cgaattgcct tcttagtcgc ccgaccacga atgttagctt cttcgagata ttcatcaata
     7201 aattgttcac gaatttcagg tgtaacaagt gactcagcag ctaatttttc caagtagagc
     7261 acttcgacac cttcatcacg aagagcttga gcaaaagcat catgctcttt ctgtgcatct
     7321 tctaagaatg gaatatcatc gaagagtagg cgttctagat agtcaggcat caggttttca
     7381 atttccttac ctggtctgtg taacataact tttttcagct taccaatttc tgaaaaaaca
     7441 tgaattggat ggtttgacat gatctgtcct ccttgtagat ttatacatga tgggaaacga
     7501 ggaggaccgt acgctttcct gcctctcatt tcctctttac atccatagtt taacagagca
     7561 aaaaaacaaa aacttgaaaa cgctcgcatt tatgttgaga aattcttcac attttaaacc
     7621 ttatttataa ataattatcg attatatcgc ctatattctg cataattctt tgtattatat
     7681 cattatatga atttttattt tttataaaaa acagagactt caatgagttt ctgtcaaatt
     7741 ttctaagaaa taatcaatat ctaaataagt taactgttta tggctataag caattttacc
     7801 atcctgcttc agttgcttca aaacatagct aaccgtttcc cgtgtcgtag ctgctaaacg
     7861 cgaaatctct tgaatatgaa tttcaaatgg caaggtagca aactgctctc gctggcacat
     7921 atcccaataa agaagagcca aggcttgaac gactcgatct gatgccttgg aacgcatcgc
     7981 atttcgcaag cgcaactctt gaaaacgaag cactttggat aatttttgac agatataagc
     8041 catttgactt ggatttatct tcgacaaggt ttcaaacaag accatcggta caataaaata
     8101 ctctaggtcc gttatggcaa tggcagtata atgataaggt ttgtcctgaa acatatctcc
     8161 aaaagggaag gcaccgccct gccgaatata gtctaaatac gtaaaactat ccgtctcatc
     8221 atattgctca atccgagcat agcccttata caatacaaat agataatctc taggatcctc
     8281 tgcgtaaaaa aagatttgtc ccttaggaat ctttcgaaaa cgaatatgct tagccaattg
     8341 atcaaagcta tcacgtgtca aacgttcaaa agttggatgt gcccttagat aatcatattg
     8401 ttcgttgctt atcatcgaaa ctcctttcta gctaaagtat ccttctatct attttaacat
     8461 atattaatgt tatatgctaa tcattactga aaaattcata aaacaggatc attcctgtga
     8521 agaggaatac tatagtagtt tgaattagga aaaggaca
//
LOCUS       DASGAC010000088         8329 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.088, whole genome shotgun sequence.
ACCESSION   DASGAC010000088 DASGAC010000000
VERSION     DASGAC010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8329
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.088"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            301..747
                     /locus_tag="U1335_001441"
     CDS             301..747
                     /locus_tag="U1335_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family transcriptional regulator"
                     /protein_id="HEM5231908.1"
                     /translation="MKVRIEFDDSLDQVEVVIRTSQLGPEIEQIQRALQQVSRPSLVF
                     YKGSSEYFLSLGDILFFETDGTKIFAHTGDDAYEVKMKLYELEEYLPIYFCRVAKSTI
                     VNSKAVYSLDKSFSGTSRIAFYKTHKEVHVSRHYYHLLKEKLQEMR"
     gene            752..1411
                     /locus_tag="U1335_001442"
     CDS             752..1411
                     /locus_tag="U1335_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231909.1"
                     /translation="MKKYGLGIALLVLAGLVLFRDSLGLHLALPFWTTVWFVLTFVTG
                     FHRLVKLDWLASIFCFGLAFIAVNSVSDWVKFGTWNMVLSLVLLCLGLKLIFKPRKRR
                     LTHGAVTGVIGDKGRETAFGSSTRYIHDDNFLHDSVEVVFGSSMVYFDQAIILGNKAE
                     FHIDAAFSSVDLYLPANWQAVVELDSSMSAVNNYATGMGEKMLHITGDMAFSTLNIYY
                     T"
     gene            1498..2778
                     /locus_tag="U1335_001443"
     CDS             1498..2778
                     /locus_tag="U1335_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM5231910.1"
                     /translation="MKKILKNATYLWVLTADMLSNFGDVVYYLALMNYVLLVPNSRLA
                     LAIVTFSEIFPSFMGLFTGYLADKTVNKISTIKLTLLFRVLLYLILGFCMGFEPALWI
                     VVVAATFNVFADFAGFYENGLYTPLGLRVAPKEEREQYSAFRQTVTSLLNIAFQALSA
                     LLVGLLSYQNLAFLNAGTFLASLLIMQLLTPAFRKLLTEQPLKIAEQPSQPEQETKGP
                     GILASFKQAIVELRKIPEFRLVLITSPLINACGAILYPILVLLISEDPGLVFLNVETT
                     LALTILIFFVGNILGSTLVFSLFKKTSMVTLEVAATFSLLGVFVGMLLHQLPIIFFFL
                     TTMGISSGASGPKFNAKFVNSMPEEQLATIGGAVSTYFMLGQAFTRLLVSGLLLILTV
                     NQISGFFLTATGILVLYVLYWLARNQKTPQNQSV"
     gene            2956..4410
                     /locus_tag="U1335_001444"
     CDS             2956..4410
                     /locus_tag="U1335_001444"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEM5231911.1"
                     /translation="MTKPIRVRYAPSPTGLLHIGNARTALFNYLFARHHGGTFLIRIE
                     DTDRKRHVEDGERSQLENLRWLGIDWDESPETHEQYRQSERLDIYQKYVDELLASGKA
                     YKSYVTEEELAAERERQEAAGETPRYINEYLGMSEDEKAAYIAEREAAGIVPTVRLAV
                     NEAGIYKWSDMVKGEIEFEGGNIGGDWVIQKRDGYPTYNFAVVIDDHLMEISHVIRGD
                     DHIANTPKQLMVYEALGWEAPEFAHMTLIINSETGKKLSKRDTNTLQFIEDYRRKGYM
                     SEAVFNFIGLLGWNPGGEEEIFSREQFIQLFDENRLSKSPAAFDQKKMDWMSNEYIKN
                     ADLETIFNLAKPFLEEAGRLTDKAEKLVELYKPQMSSADEIVGLTDLFFSDFPELTDE
                     EKEVMAGETVPTVLNALKEKLEAMTDEDFQPDNIFPQIKAVQKETGIKGKNLFMPIRI
                     AVSGEMHGPELPNTIYLLGREKSIQHIDNMLKSL"
     gene            4548..5924
                     /locus_tag="U1335_001445"
     CDS             4548..5924
                     /locus_tag="U1335_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEM5231912.1"
                     /translation="MENHNFENQGTFNREMNSRHLQMLSIGGVIGTGLFLSSGYTIAQ
                     AGPFGAVAAYLFGAVMVYLVMFSLGELSVAMPVTGSFHTYATKFISPGTGFMVAWMYW
                     LCWVVALASQFVGAAQLMQRWFPSVPIWIFATIFAVIVFGLNTLSVGWFAKAEDALSS
                     IKVYAIAAFIVLGTLAIFGILPFEGTNATPLFTNITAQGLLPNGLVGLISVMLSVNYA
                     FSGVEMIGIAAGETDNPKKAVPQAIKSTIGLLVIFFVLTIVVLAALLPMSEAGVTEAP
                     FVLVLDKIGFPYAADIMNFIILTAILSASTSGLYASSRMLWSLANEGMISKELVKINK
                     HGVPMRGMILSMIGVVIALIASIYAEDTIFLALVSIAGFAVVIAWLAIPLAQIGFRRE
                     FLKTHSEDELEYKTPFSPTLPWITVILLVISIIGIGWDPSQRAGLYFGVPFMIGCYIY
                     HYIRFKKW"
     gene            5936..6883
                     /gene="mmuM"
                     /locus_tag="U1335_001446"
     CDS             5936..6883
                     /gene="mmuM"
                     /locus_tag="U1335_001446"
                     /EC_number="2.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002351766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase"
                     /protein_id="HEM5231913.1"
                     /translation="MGRFKELLENQEFVILHGALGTELEFRGHDVSGKLWSAKYLLEN
                     PQYIKDIHKDYILAGADLVTTSTYQATFEGLAEVGLSQAEAEDLIRLTVDLAKEARDE
                     VWAELSEAEKAQRTYPLISGDVGPYAAYLANGAEYTGDYGNISLSELKDFHRRRIELL
                     LEQGAELLALETIPNVLETQALVELLAEDFPEIEAYISFTSQDGQSISDGTSIEKIAE
                     LVNSSEQILAVGLNCTAPSLYPAFLSQLREKTDKPFVTYPNSGEVYDGTTQTWKEEAD
                     HSHSLLDNTLAWHKLGATVVGGCCRTRPADIASLVAGLK"
     gene            complement(6920..7282)
                     /locus_tag="U1335_001447"
     CDS             complement(6920..7282)
                     /locus_tag="U1335_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM5231914.1"
                     /translation="MKTGQVMQQFGIKRDTLRFYTEQGLLQPQLIDGNYYWNEEEINN
                     LENILGLRQLGLSVKAIIRIKELHDTKCGSLEQLKENKQVILDEIADREKQILLLQEQ
                     KENLEDLVKQIEEKLQNL"
     gene            7343..7633
                     /locus_tag="U1335_001448"
     CDS             7343..7633
                     /locus_tag="U1335_001448"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231915.1"
                     /translation="MIIVVKWLIVLYLGLLPLSAWVYRKQLPNWLLVLYACPVLLSLL
                     GWQTVLGFILGLLLACGVRVIGGRVLFGKNRLSHFLSHLLLSFILALALLAF"
     gene            complement(7622..8122)
                     /locus_tag="U1335_001449"
     CDS             complement(7622..8122)
                     /locus_tag="U1335_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEM5231916.1"
                     /translation="MEIWNAYTADGHLTDHTLTRGESIPDGLYHLVVECIIRHHDGST
                     LFMKRDSTKPSYPDYYEATAGGSALFGEIAEQAILREVREETGIELTADQLRHHTHFV
                     AHDDQCIFHCYWAETNWDKAAIQLQAEETSNYIWVPQENLKYFLETELVIPRQKDYVE
                     RLFLES"
BASE COUNT         2051 a         1736 c         1983 g         2559 t
ORIGIN      
        1 aacaaaatgg taacagtgtt ctatctgcgt aagtagaaac gaactacgtt cgctctatct
       61 ccaacctcca aaggttcctc aaacctttgg agctagtctg tttttgattt tcattgagta
      121 taaaaagtaa tctgttagtg gtgaactgtc tctgaaaaga tggagaaata gatacttgaa
      181 ttctagcgac ttttaatgat gaatgtttac cacttacctg ctgattttca ccacttactg
      241 aaatgccctt gtaattgtgg ttggaattgg tataatagag ctatcaaaaa ggagggagct
      301 atgaaagtta ggattgaatt tgatgacagc ttagatcagg ttgaagttgt tatccgaacc
      361 agtcagttgg gaccagagat tgaacagatt cagcgggctc tgcaacaagt tagccgtccc
      421 tcgcttgtct tttacaaggg gagtagtgag tattttcttt cattgggtga catacttttc
      481 tttgaaacgg acggaaccaa gatttttgct catacaggcg acgatgccta tgaggtcaag
      541 atgaagctct atgagctgga agaatacttg ccaatctact tttgtcgagt ggccaagtca
      601 accattgtta acagtaaggc ggtctattcg ctggacaagt ccttctcagg cactagtcgg
      661 attgccttct acaagaccca caaggaagtc catgtgtcgc ggcactatta ccacttgctt
      721 aaagaaaagt tacaggaaat gaggtaggaa gatgaaaaaa tatggtttag ggattgctct
      781 gctggtcttg gcaggcttgg tcttatttag ggattcactg ggcttgcatt tggctctgcc
      841 attttggaca acagtctggt ttgttttaac ctttgtgact ggttttcacc gcttggtgaa
      901 gctggattgg cttgccagta tcttttgttt cggtctggct tttatagcgg tgaactcagt
      961 ttctgattgg gtgaagttcg ggacctggaa tatggttctg tcacttgtcc tgctgtgcct
     1021 tggcctgaaa ctaattttta aaccaaggaa gcgcagactg actcatggag ctgtcacagg
     1081 cgtgattggt gacaagggac gggagacggc ttttggctct tctactcgct atattcatga
     1141 cgataatttt ctccatgata gtgtggaagt ggtctttggc tccagtatgg tttactttga
     1201 tcaggcgatt attctgggaa ataaggctga atttcatatc gatgcagctt tctcatcggt
     1261 tgatctttat ctgccggcaa attggcaggc ggtcgtggag ctagatagtt ccatgtctgc
     1321 tgtcaataac tatgcaactg gtatgggaga aaagatgcta catatcacag gagatatggc
     1381 cttctccact ttgaatatct attacaccta gagtgaacag agagcagtct attcaggctc
     1441 ctctgtagaa taaaaagtcg gaatattctg gaaattaaac aaaagaaagg gattatcatg
     1501 aaaaagattt tgaaaaatgc tacttaccta tgggtactga cggcggatat gctgtccaat
     1561 tttggtgatg tggtctatta tctggccctg atgaactatg ttttgctggt gcccaacagt
     1621 cgtctggctc tggcgattgt gaccttctcg gaaatcttcc ctagctttat ggggctcttt
     1681 acaggctatc tggcagacaa gacggtcaac aaaatcagta ccattaagtt gaccctgctc
     1741 tttcgtgtcc ttctctacct catcctcggc ttctgcatgg gctttgagcc agccctctgg
     1801 attgtcgtgg tggctgcaac tttcaatgtc tttgcagact tcgctggctt ctatgaaaac
     1861 ggcctctata cacctctggg attacgcgta gcgcccaagg aagagcggga gcagtactcg
     1921 gcctttcgcc agaccgtgac cagcctcctc aacatcgcct ttcaggccct ctctgccctc
     1981 ttggtcggcc tcctatccta ccaaaaccta gcctttctca acgccggcac ctttttagcc
     2041 tccctcctca tcatgcagct gctgacgcca gcctttcgca aactcctgac ggagcagcct
     2101 ttgaaaatag cagagcagcc gagccagccc gagcaggaaa ccaagggacc gggcattcta
     2161 gcttctttca agcaagccat cgtggagctg cgcaagatac ccgagttccg tctggtcctg
     2221 attaccagcc ctcttatcaa tgcctgcgga gctattctct atcctatttt ggtcctcttg
     2281 attagcgaag acccaggcct cgtcttcctc aatgttgaaa caacccttgc cctgaccatt
     2341 ctgattttct ttgttggcaa tatcttggga tcgaccttgg tatttagcct cttcaaaaag
     2401 accagcatgg tgacgcttga agtggcagcc actttctctc ttcttggcgt gtttgtcgga
     2461 atgttgctac atcaactgcc aattattttc ttcttcctta ctacaatggg aattagttct
     2521 ggagctagtg gacctaagtt taacgctaag tttgtcaact ccatgccaga ggagcagttg
     2581 gcgaccatcg gcggagcggt atcgacctat tttatgctag gtcaagcctt tactcgacta
     2641 ctggtttcgg gtttgctctt aatcttgact gtcaatcaga ttagcggatt tttcctaacg
     2701 gcaactggca tcttggtcct atacgtcctt tactggctgg cacgcaacca aaaaacacct
     2761 caaaatcagt ctgtttagac tgatttttct gttatctggg ggggttctat gctataatgt
     2821 tcttgattgc tactcttcga aaatcaaatt caggcgtcgt tgacttgact tgatgaactt
     2881 cagttctatc tgcttctacg tcgcctagtc tgaattcgat tttcattgag tatgaaaatt
     2941 ttacaggaga gaaacatgac taaaccaatt cgtgtgcgtt acgcaccaag tccaacggga
     3001 cttttacata tcggaaatgc tcgtacagca ttgtttaact atctttttgc ccgtcatcat
     3061 ggcggtactt tccttattcg catcgaggac acagaccgca aacgccacgt agaagacggc
     3121 gagcgttctc agctggaaaa cctacgttgg ttgggtattg actgggatga gagtccagaa
     3181 actcatgagc aataccgtca gtctgagcgt ttggatattt accagaaata tgtcgatgag
     3241 cttctagctt caggcaaggc ctacaagtct tacgtgacag aagaggaatt ggcggcggag
     3301 cgtgagcgtc aggaggctgc gggcgaaaca cctcgctaca tcaacgaata cctggggatg
     3361 tctgaagatg aaaaagcagc ctacatcgca gagcgtgagg cggctggcat tgtcccaacg
     3421 gttcgcttgg ctgtcaacga agctggtatc tacaagtgga gtgacatggt taagggcgaa
     3481 atcgagttcg aaggtggtaa catcggtggt gactgggtta tccagaaacg tgacggctat
     3541 ccaacctaca actttgccgt ggttattgac gatcatttga tggagatttc gcacgttatc
     3601 cgtggggacg accacattgc caacacacct aagcaactta tggtttatga ggcactagga
     3661 tgggaagcgc cagaatttgc ccacatgacc ttgattatca actctgagac tggtaaaaag
     3721 ctgtctaaac gtgataccaa tacccttcag ttcatagaag attaccgtcg taaaggttac
     3781 atgtctgaag ctgttttcaa ctttatcggt cttctaggtt ggaacccggg tggtgaagag
     3841 gaaatcttct cccgtgagca atttatccaa ctctttgatg aaaatcgtct cagcaagtca
     3901 ccagctgcct ttgaccagaa gaaaatggac tggatgagca atgagtacat caaaaatgct
     3961 gatttagaaa caattttcaa tcttgctaag ccattcttgg aagaggctgg tcgcttgaca
     4021 gacaaggcgg aaaaattggt ggaattgtac aagccacaga tgtcatctgc ggatgaaatc
     4081 gttggtttga cagatctttt cttctctgat ttcccagaat tgacagacga ggaaaaagaa
     4141 gttatggcag gcgaaactgt accaactgtt ctcaatgctc ttaaggaaaa attggaagcc
     4201 atgacggacg aagatttcca accagataac atcttcccgc aaattaaggc tgttcaaaaa
     4261 gaaacaggca tcaagggcaa aaacctcttc atgccaatcc gtatcgccgt ttcaggcgaa
     4321 atgcacggac cagagttgcc aaataccatt tacttgctcg gccgtgaaaa atcaatccag
     4381 catattgaca atatgttgaa gagtttgtaa tgaaataatc tccgctgtcc tgtgatagtg
     4441 gggattttgt tataactgat aactataaca cttgcattga aaacggtata acgattttct
     4501 gaaaatctgt ggtatcataa ataaatcatt actatttagg agagtgtatg gaaaatcata
     4561 attttgaaaa tcagggtact tttaatcgag agatgaacag tcgccatttg cagatgctgt
     4621 ccatcggtgg ggtcatcggg acaggtttgt tcttgagttc aggctatacc attgcacagg
     4681 ctggtccatt tggagctgtt gcagcctatc tttttggtgc agttatggtc tatttggtta
     4741 tgttttcttt gggtgagctt tcggtagcca tgccagtcac aggttctttt catacctacg
     4801 cgaccaagtt tatcagccct ggaacgggtt ttatggtggc ctggatgtat tggctttgtt
     4861 gggtagtcgc tctagcttct cagttcgtcg gagcagctca actcatgcaa cgctggtttc
     4921 ctagtgtgcc gatttggata tttgcaacga tttttgcagt cattgttttt ggactcaata
     4981 cactctctgt tggctggttt gccaaggcgg aggatgcact ctcatctatc aaggtctatg
     5041 ccattgcagc ctttatcgta ctcggaacct tagctatttt tggtattttg ccatttgagg
     5101 gaaccaatgc tacgccgctc tttactaata ttacagccca aggtttactt cctaacggcc
     5161 tagttgggtt gatttcagtt atgctctctg taaactatgc attttcagga gtggaaatga
     5221 taggaattgc ggcaggggag acagataatc ctaagaaagc cgtaccgcaa gctattaaat
     5281 caactatcgg tctcttggtc atcttcttcg tcttgaccat cgtggtctta gcagctttgc
     5341 ttcccatgtc agaagcaggt gtaactgaag ctccattcgt acttgtcttg gacaagattg
     5401 gttttcctta cgctgcagat attatgaact ttattatctt gacggctatt ttatcggcct
     5461 ctacatcagg gctatacgct tcaagccgta tgctttggtc tttggctaat gaaggcatga
     5521 tcagcaagga attagtcaag attaacaagc acggtgttcc aatgcggggc atgattttgt
     5581 ccatgattgg tgttgttatc gctttgattg catcaattta tgcagaagat accatcttcc
     5641 ttgctctggt ttccattgct ggttttgcag ttgtgattgc ttggttggcc attccattgg
     5701 cacaaatcgg tttccgtcgt gaatttttga aaactcacag tgaagatgaa ttggaataca
     5761 agacgccctt ctcaccgacc ttgccatgga ttactgtcat tttgctggtt atttctatca
     5821 tcggaatagg ttgggatcct tctcagcgtg ccggcctcta cttcggtgta ccatttatga
     5881 ttggttgtta tatttatcac tatatccgct ttaaaaagtg gtaggaggtt ctataatggg
     5941 tcgttttaag gaattattag aaaatcaaga gtttgtcatt ttacacggtg ctcttgggac
     6001 agaattggaa tttcgaggtc atgatgtatc gggcaagctc tggtctgcca agtatctatt
     6061 ggaaaatccc cagtatatca aggatattca taaggactat attctagctg gagcagattt
     6121 ggtgacgact tcaacctatc aggcgacctt tgaaggatta gcagaagttg gcttgtcaca
     6181 agcagaggca gaggacctca ttcgcttgac cgttgatttg gcgaaagaag cgcgtgatga
     6241 ggtctgggca gaattgtctg aagctgaaaa agcacaacga acctatcctc tcatttcagg
     6301 tgacgtgggt ccttatgcag cttatttggc caacggtgct gaatacacgg gtgactatgg
     6361 caacattagt ctgtcagagt taaaagattt tcaccgtcgc agaatcgaac tcctcttaga
     6421 acagggggca gaactcttgg ccttggaaac cattccaaat gttctcgaaa cacaggcctt
     6481 ggtagagttg ctggcagagg attttccaga gatagaggcc tatattagct tcacttcaca
     6541 agacgggcag tcgatttctg acggaacgtc tattgaaaaa atagcagagc tggtcaacag
     6601 cagtgagcag attttggcgg ttggtcttaa ctgtacggct ccctcgctct atccagcctt
     6661 tctcagtcag ttgagagaga aaacggataa accatttgtg acctatccaa attctggaga
     6721 agtctatgat ggcaccactc aaacttggaa agaagaagct gaccatagcc acagcctttt
     6781 ggacaatact ctggcttggc ataagctagg agctacagtg gttggtggtt gttgccgaac
     6841 ccgaccagct gatattgcaa gtctagttgc tggattgaaa taaatgaatt cccgctgtcc
     6901 tgtgatagcg gggattttgt tatagattct gtaatttttc ctcgatttgt ttgactaggt
     6961 cttctaaatt ttccttctgt tcttggagta ggaggatttg tttttcacgg tcggcaattt
     7021 catccagtat aacctgtttg ttttctttta gctgttcgag actgccgcat ttggtgtcgt
     7081 gaagttcttt gatacggata atagctttca cagataggcc taactggcga agtcctagga
     7141 tattttctag gttgttgatt tcttcttcgt tccagtagta attgccgtca atcaattgcg
     7201 gttgtagcag tccttgttct gtgtagaaac gaagcgtatc ccgtttgata ccgaattgtt
     7261 gcatgacttg tcctgttttc ataatgtcct cttgacaggg gcttagcccc tcatgataaa
     7321 ttggtgggga aaggagttct atatgattat tgttgttaaa tggttgattg tgctttattt
     7381 ggggctatta ccgctatctg cttgggttta tcgcaagcaa cttcctaact ggttactggt
     7441 tttatatgct tgcccagttc tgctcagttt attgggctgg cagacagttt tgggatttat
     7501 attaggctta ttattggctt gcggggtgag agtgataggc ggtcgtgttc tttttggaaa
     7561 aaatcgtctc agtcactttt tatctcatct tttactgagt ttcattcttg ctctggctct
     7621 tttagctttc taaaaacaat ctctccacat agtccttctg ccttggaatg actagttctg
     7681 tttccaggaa atatttcaaa ttttcttgtg ggacccagat gtagttgctg gtttcttcgg
     7741 cttggagttg gatagcagct ttgtcccaat tggtttcggc ccagtagcag tggaaaatgc
     7801 actggtcgtc atgggcgaca aagtgtgtat ggtggcggag ttggtcagct gtcagctcaa
     7861 tgcctgtctc ttcgcggact tcgcgtaaaa tagcctgctc tgctatttcc ccaaacaatg
     7921 ccgaacctcc tgctgtcgct tcataatagt cagggtagga gggcttggtg ctgtcgcgtt
     7981 tcatgaagag ggtgctgccg tcgtggtggc ggatgatgca ctcgacgacc aggtggtaga
     8041 ggccgtcggg aatggattct ccgcgtgtga gagtgtggtc ggtcaagtga ccgtcggctg
     8101 tgtaggcgtt ccagatttcc atattttgct ccttttctag attggttatt cattgtagca
     8161 aatatggaag tgttagacaa gtatcttgcg ggtgtttgcg tattggaatg attggaggat
     8221 tactgagcta gaaagctgac gtcagtcgcc tctttcattt gcttattttc aaattaatat
     8281 tgaaaatata caaaaaaaat tcaatttttt gtatatttat gttgcaaaa
//
LOCUS       DASGAC010000089         8272 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.089, whole genome shotgun sequence.
ACCESSION   DASGAC010000089 DASGAC010000000
VERSION     DASGAC010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8272
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.089"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(1066..1281)
                     /locus_tag="U1335_001450"
     CDS             complement(1066..1281)
                     /locus_tag="U1335_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231917.1"
                     /translation="MWDRQIDSLEVSYATLVTAREEGREEGREELQITSARNFLLAGV
                     DIDIISNSLNLPLERVLQLQSELNANS"
     gene            complement(1441..1644)
                     /locus_tag="U1335_001451"
     CDS             complement(1441..1644)
                     /locus_tag="U1335_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231918.1"
                     /translation="MWDKQIDSLEVSYATLVTAQEEAREEVQITSARNFLLAGVDIDI
                     ISNSLNLPLERVLQLQSELNANS"
     gene            complement(1804..2055)
                     /locus_tag="U1335_001452"
     CDS             complement(1804..2055)
                     /locus_tag="U1335_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231919.1"
                     /translation="MWDKQIDSLEVSYATLMTAMEDGFEEGLERGREEGREEGREEVQ
                     ITSARNFLRSGFPADAIAENLNLPLERVLQLQSELNANS"
     gene            complement(2215..2442)
                     /locus_tag="U1335_001453"
     CDS             complement(2215..2442)
                     /locus_tag="U1335_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231920.1"
                     /translation="MWDKQIDSLEVSYATLVTAMEDGFEEGLERGREELQITSARNFL
                     LAGVDIDIISNSLNLPLERVLQLQSELNANS"
     gene            complement(2530..3468)
                     /locus_tag="U1335_001454"
     CDS             complement(2530..3468)
                     /locus_tag="U1335_001454"
                     /inference="COORDINATES: protein motif:HMM:TIGR01784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HEM5231921.1"
                     /translation="MRHTLLRPTQDTVAKKIFQNTEVTKAFISDILDLPVLEVELLDG
                     YQIRLPNDDLPKGFYTVTDILVKLDDGTQVVIEIQIAKQKTFVNRLWAYICTQVHDNV
                     EKVRQEHGDTHSTHESIYPVYGIALLEKNYFDDDKPFHVFSLREEETNEELTVKPKTS
                     SKHHSLLKMAFLELEKYQPETISDYDVKKWFEFFGNRDFTIQPDKIISQAEHALDFTS
                     WTKEEKDMWDKQIDSLEVSYATLVTAMEEGLERGREEGLEKGLERGREEGREEGLIYS
                     ARNLLLAGFDAVVISNSLNLPLERVLQLQSELNANT"
     gene            complement(3641..4648)
                     /gene="tsaD"
                     /locus_tag="U1335_001455"
     CDS             complement(3641..4648)
                     /gene="tsaD"
                     /locus_tag="U1335_001455"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEM5231922.1"
                     /translation="MKDRLILAIETSCDETSVAVLRNDAELLSNVIASQIASHQRFGG
                     VVPEVASRHHVEVITACIEEALLEAEVTAEDLTAVAVTYGPGLVGALLVGISAAKAFA
                     WANGLPLIPVNHMAGHLMAARAVKELEFPLLALLVSGGHTELVYVSEAGDYKIVGETR
                     DDAVGEAYDKVGRVMGLPYPAGRVIDELAHEGQDIYDFPRAMIKEDNLEFSFSGLKSA
                     FINLYHNAQQKGETLSNADLSASFQACVMDILMAKTKKALEQYPVKTLVVAGGVAANQ
                     GLRERLAAEITDVEVIIPPLRLCGDNAGMIALAAVSEYNKETLAGWDLNAKPSLAFEN
                     L"
     gene            complement(4638..5078)
                     /gene="rimI"
                     /locus_tag="U1335_001456"
     CDS             complement(4638..5078)
                     /gene="rimI"
                     /locus_tag="U1335_001456"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HEM5231923.1"
                     /translation="MIEIKHYDGQENLAEAVLAVMQSVYEQSPWTLEQIVSSMASQDE
                     DYYLAYKGQELVGFLAVQTVLDEMEILQIAVKADFQRLGIASQLMAAVMDWEGDIFLE
                     VRESNSAAQALYTRQHFTKIGKRKDYYRHPVEDAVIMKRECDER"
     gene            complement(5075..5758)
                     /gene="tsaB"
                     /locus_tag="U1335_001457"
     CDS             complement(5075..5758)
                     /gene="tsaB"
                     /locus_tag="U1335_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HEM5231924.1"
                     /translation="MKILALDSSNQALSVALVEDGRLQAETLLAVKKNHSISLMPVVD
                     FLVAQVGWTPKDLNRIVVAQGPGSYTGLRVAVATAKTLAYTLKIDLVGLSSLQSLVPP
                     SLTGLVVPLIDARRNCVYAGVYENGRAVEPDRYWSFEDLLSSLADKENITFVGEVENF
                     MEQIEQALPTAQYQTSLPSAYQLAVIGQDLPAVDVTSFEPNYLKRVEAEENWLKDNQA
                     GSESYIKRV"
     gene            complement(6065..7168)
                     /locus_tag="U1335_001458"
     CDS             complement(6065..7168)
                     /locus_tag="U1335_001458"
                     /inference="COORDINATES: protein motif:HMM:NF012311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8/S53 family peptidase"
                     /protein_id="HEM5231925.1"
                     /translation="MIQKILRLFGLVSCLLALVCAVVFREGLVSNPLGQFSGFPLNHQ
                     HTGWGTSRYYPNIDPTAKPTQEVRVAIIDSGIREEAVDEFYVEDMQVFSTSTSVFDTI
                     GHGTKIASIIGAKNNHVLTLGLSPEARLFSYKVTDDDGTIKNDYLVKAVQQAIEDHVD
                     VVNLSMVVTNPSKELEDVVEAYLQQGGYMVVPAYDLKKVEALNPLLTIEGVVSVGTYN
                     EFFTLLNPQEEIAYYAPYSQETLSMENRIVRSEGSSFSTAFVSGTIAHLLSVGQTDAE
                     ITKQLDDFFSARSVKSKQSPLLAGYETHQALVNNSYTVLSLSLIGLLVFQTILGILTA
                     RKESEVRGAYMRYIVVTDVLLVILALLILPTQM"
     gene            complement(7205..7786)
                     /locus_tag="U1335_001459"
     CDS             complement(7205..7786)
                     /locus_tag="U1335_001459"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231926.1"
                     /translation="MKKKFLAVTMLFSLVFPASLVFAESHGDHSSHGDHSEAVVISEM
                     AEGQLIVEQQIEVAAQTEPLYSFEEILDLPNEAFPNATPDEVESIKGMIEATMDYNHS
                     DMKVPLSMVYIDKTAENSDAILSGGGLPYCLDNNGWGYQNFITSDCNIAMAVVSQCVY
                     ESIIKNPNLRYCRADLYRNCSPRIGHSPYWHRH"
     gene            complement(8057..8248)
                     /locus_tag="U1335_001460"
     CDS             complement(8057..8248)
                     /locus_tag="U1335_001460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231927.1"
                     /translation="MISFKDTFVKIMARYYRLLLDYIENGRSDKEKEIIETYIQSIQE
                     LIDDQTASIIRVHFLRFES"
BASE COUNT         2300 a         1931 c         1662 g         2379 t
ORIGIN      
        1 actgtctggg ggacagttgg aagttggaaa tagagcgaac aaagttcgct acaaaactgt
       61 ctgggagaca gtttgaggtt ggaaatgaag cgaactctat tcgcatcagt cgtataggcc
      121 agatttggag tgtaaaaaac gaactgctga gatttgcttt gcaaatctta tctcctacct
      181 ttaacagtct cccagactgt taaagccaat caaccactgc gctgagatgt tgacacgaac
      241 tctgagaagg ggtgctgggc tttctgccca gcctcgtcgg gatccggcta ggttttctgg
      301 gtgcgttttc atggcatttg ctgagaatga ggtttgtttt cttggatagt tgatagcgtt
      361 ttctgaatgt tttccagttt cttttgtata tttttcaaca aatgcgaatg atggggcttg
      421 tatatttatg caaagagagg aggtgagtgc tggttttata tcggtgccat aacctagttt
      481 gcacacattt attcatgttg atgaagttga accttggcga ctatagactt gtcttgctgt
      541 aagcgagggg gtgttacatg gatattgttg tgtaaagaga tagggtttgt tatattttta
      601 tgtttttgag ctggacgaaa cttttcccct tatatcaatt gtttagttct cttgtatagc
      661 gatttgaatc aagagtagga cagttttggg ttattgtatc agtagctcaa tctcaaaata
      721 gctttagggt cctcaagctg ataaacttga acccgtcccg tttctaattc aatttactat
      781 agtacagtca tttgaattat ctttgataca tcgtcacttt cgccttgcca tactttagta
      841 tagcctgcgc ctcagttcct tgtctgaaag ctaattcatt cgactataca aggcacaaga
      901 aaaccctcga ataagcatat tcagagggct ttgataggtt ttataaattt cagcctgggc
      961 gataatctta tctggctgaa tggtaaagtc acggttgccg aaaaattcaa accatttttt
     1021 gacatcgtag tcggaaatgg tttcgggtta tatggagggc agaggttagc tattggcatt
     1081 caactcgctt tgaagttgga gaactcgttc gagaggaagg tttaagctgt tcgatatgat
     1141 atcaatatca actccagcta acaagaaatt acgggcagag gtgatttgaa gttcttcacg
     1201 tccttcttca cgaccttctt cacgtgcagt caccaaggta gcgtaactaa cctcaaggct
     1261 atcgatttgt ctatcccaca tatctttttc ctcctttgtc caagttgtaa aatctagggc
     1321 atgttctgcc tgagatatga tcttgtcagg ttgaatggta aagtcacgat tgccgaaaaa
     1381 ttcgaaccat tttttaacat cgtaatcgga aatggtttcg ggttatatgg agggcagatg
     1441 ttagctattt gcgttcaact cgctttgaag ttggagaact cgctcgagag gaaggtttaa
     1501 gctgttcgat atgatatcaa tatcaactcc agctaacaag aaattacggg cagaggtgat
     1561 ttgaacttct tcacgtgcct cctcctgtgc agtcaccaag gtagcgtagc taacttcaag
     1621 gctatcaatt tgcttatccc acatatcttt ttcctccttt gtccagcttg taaagtctaa
     1681 ggcgtgttct gcctgggaaa taatcttgtc aggttgaatg gtaaagtcac gattgccgaa
     1741 aaactcgaac cattttttaa catcgtagtc ggaaatggtt tcgggttata tggagggcag
     1801 atgttagcta tttgcgttca actcgctttg aagctggaga acacgctcga gagggaggtt
     1861 tagattttca gctattgcgt ccgctggaaa accagacctc aagaaattac gggcagaggt
     1921 gatttgaact tcttcgcgtc cttcttcacg accttcttcg cgacctcgct ccagtccttc
     1981 ttcaaatccg tcttccatcg cagtcatcaa agtggcataa ctaacttcaa ggctatcaat
     2041 ttgcttatcc cacatgtctt gttcctcctt tgtccagctt gtaaaatcta gggcatgttc
     2101 agcctgggaa ataatcttgt caggttgaat ggtaaagtca cgattgccga aaaattcgaa
     2161 ccatttttta acatcgtagt cggaaatggt ttcgggttat atggagggca gaggttagct
     2221 atttgcgttc aactcacttt gaagttggag aactcgctca agagggaggt ttaagctgtt
     2281 cgatatgata tcaatatcaa ctccagctaa caagaaatta cgggcagagg tgatttgaag
     2341 ttcttcacgt cctcgctcca acccttcttc aaatccgtct tccatcgcag tcaccaaggt
     2401 agcgtagcta acttcaaggc tatcaatttg cttatcccac atatcttttt cctcctttgt
     2461 ccaagttgta aaatctaggg catgttcagc ctgagatatg atcttgtcag gttgaatggt
     2521 aaagtcgtat catgtattgg cattcaactc actttgaagt tgaagaactc gctcgagagg
     2581 aaggtttaag ctgttcgata tgacaacagc atcaaatcca gctagcaata aattacgggc
     2641 agagtagata agtccttctt cacgtccttc ttcacgtcct cgctccaacc ctttctccaa
     2701 gccttcttca cgtcctcgct ccagtccttc ttccatcgca gtcaccaagg tagcgtagct
     2761 aacttcaagg ctatcaattt gcttatccca catatctttt tcctcctttg tccagcttgt
     2821 aaagtctaag gcgtgttctg cctgagatat gatcttgtca ggttgaatgg taaagtcacg
     2881 attgccgaaa aattcgaacc attttttaac atcgtaatcg gaaatggttt cgggttggta
     2941 tttttctaac tccagaaaag ccattttcaa gaggctgtgg tgcttggagc tggttttggg
     3001 tttgactgtc agctcttcat tggtctcctc ttcacgcaag ctaaacacgt ggaaaggctt
     3061 atcatcatca aaataatttt tctccaagag agcgatgcca taaacaggat aaatagactc
     3121 atgtgtagaa tgggtatcgc catgttcctg acggaccttt tcgacgttgt catgcacctg
     3181 cgtacagatg taggcccaca agcgattgac aaaggtcttt tgcttggcaa tctggatttc
     3241 aatgacaact tgtgtgccat cgtccaattt gactaaaatg tccgtcaccg tgtaaaaacc
     3301 tttaggcaag tcatcattgg gcaggcgaat ctgatagccg tcaagaagtt ctacttctag
     3361 aacaggcagg tccaaaatat ctgaaataaa ggccttggtc acttccgtgt tttgaaaaat
     3421 tttcttggca accgtgtctt gtgttggtct tagtagggta tgtctcaata tcccacatcc
     3481 tttcatttga tttttcatgt tggaaccagt tttttggggt tctacttatt ttattcgaaa
     3541 tcaaatgaaa aacttttcta tatatagtat accacaaatg aaaaaagtaa cccaccacaa
     3601 aatgtgatga gttcgtttct aggtacgtat aaaattttct ttacaaattc tcaaaagcca
     3661 gactaggctt ggcattgagg tcccagccag caagggtttc cttattgtac tcactgaccg
     3721 ctgccaaggc aatcatccct gcattgtcac cgcagaggcg aagcggggga atgatgacct
     3781 ccacatcggt gatttcagcc gccaaccgct ctcgtaagcc ctgattggct gccacaccgc
     3841 ccgctaccac caaggtcttg acagggtatt gctccaaggc cttcttggtc ttagccatga
     3901 gaatgtccat aacacaggct tggaaagaag ctgacaggtc cgcattagac aaggtttccc
     3961 ctttttgctg agcattgtgg tagaggttga taaaggcgga tttgagtcca gaaaaagaaa
     4021 actccagatt atcctcctta atcatagccc gagggaagtc ataaatgtcc tgcccctcat
     4081 gtgccaattc gtcaatcaca cgaccagctg gatagggcag acccatgacc ctccccacct
     4141 tatcataggc ttcgccgact gcatcatctc gcgtttcgcc gacaatcttg tagtcgcctg
     4201 cctctgacac atagaccaac tctgtgtgtc caccgctgac caaaagggcc aagagcggaa
     4261 actccaattc cttaaccgca cgcgccgcca tcaaatgccc tgccatgtgg ttgacaggaa
     4321 tgagcggcaa gccattagcc caagcaaagg ccttggcagc tgaaatcccg accaacaggg
     4381 caccaaccaa gccaggccca taggtcacag ccacagccgt caagtcctct gccgtcactt
     4441 ccgcctccaa caaggcctcc tcgatacagg ccgtaatcac ttccacatgg tgacggctgg
     4501 ccacctcggg caccacccca ccaaaccgct ggtggctggc aatctggctg gcaatgacat
     4561 tggacaaaag ttccgcatca tttcgcaaaa cagctaccga ggtctcgtca caggaggtct
     4621 caatcgccaa aatcaatcta tctttcatca cattctctct tcattatcac cgcgtcctcg
     4681 acaggatggc ggtagtagtc ttttcgtttt cctattttgg taaaatgctg gcgtgtatag
     4741 agggcctgag ctgcactgtt agactccctc acttcgagga agatgtcccc ctcccagtcc
     4801 atcacagcag ccatcagttg actggcgatt cccagcctct gaaaatcagc cttgacagca
     4861 atctgcaaga tttccatctc atccagcacc gtctgaacag ccaaaaatcc aactaattcc
     4921 tgacctttat aggccagata gtagtcctca tcctgactag ccatactgga cacaatttgc
     4981 tccagagtcc atggagactg ctcatagaca gactgcataa ctgccaacac agcttccgct
     5041 agattttcct gaccatcgta gtgtttaatc tctatcatac acgcttgata taactttctg
     5101 agccagcttg attatctttc agccagtttt cctctgcctc tacccgcttg agatagttgg
     5161 gctcaaagct agtgacatct actgctggca agtcttgacc gattaccgcc aattgatagg
     5221 cagacggcag actggtttga tactgagcag ttggcaaagc ttgttcgatt tgctccataa
     5281 agttttctac ttctcctaca aaggtgatat tttccttgtc agccaggcta gaaagcaagt
     5341 cttcaaaaga ccagtagcgg tctggctcga ctgctctgcc attttcataa acacctgcat
     5401 agacgcagtt acggcgggca tcaatgagag gcaccaccag acccgtcagg ctaggaggaa
     5461 ccagagactg aagactggat agccccacca agtcaatctt gagggtgtag gccagggtct
     5521 tggcagtcgc caccgccacc cgcagacccg tgtaggagcc gggcccctga gcgaccacaa
     5581 tccgattcag gtctttgggc gtccagccca cctgcgctac caaaaaatca actacaggca
     5641 tgaggctgat actatgattt ttcttgacag ccaacagggt ttccgcctgc aaacgaccgt
     5701 cctccaccaa ggcaaccgaa agagcctgat tggagctgtc caaagctagt attttcatct
     5761 ttttctcttt ccttacaata ctaccttcta ttgtatgcta acttggggaa tttttcaaat
     5821 atagaaaacc tcctatgagt ataggaggca aaaaaatctc atcaaaaatg aatactaccg
     5881 aaatatccca gtgtaacaaa cagcatcaac cagattgaaa atacaatttg aaagagggac
     5941 gttacgacga caaatccttt ttgtagcttg gaagtagcct tagcaaagta ccttgtcgaa
     6001 aaatagactt gaactccaac aataaggaca acgaacacaa ttgaaattaa ttccatctaa
     6061 cacctcacat ttgagtcggc aaaattaaca aggcaagaat aaccagtaac acgtccgtta
     6121 caacgatgta ccgcatataa gcaccccgca cctcactctc ttttctcgcg gtgagtatcc
     6181 ctaggattgt ctggaaaaca agaagaccta tcagagatag agagagcact gtgtagctgt
     6241 tatttaccaa agcttgatgc gtttcataac cagccaacaa tggagactgc ttgctcttca
     6301 cagaccgtgc actaaaaaag tcatctagtt gcttggtgat ttctgcatcg gtttgtccga
     6361 cggagagcaa gtgggcaatt gtccccgaaa caaaggccgt gctaaaagag gaaccctcgc
     6421 ttcgtacaat cctgttttcc attgacagcg tttcttgaga gtacggtgcg tagtaagcaa
     6481 tctcttcctg cggattcaat aacgtaaaaa attcattgta ggtacctacg gagacaaccc
     6541 cttcaatcgt caaaagaggg tttagggcct ctaccttttt caaatcataa gctgggacaa
     6601 ccatatagcc accttgttga aggtaggctt caaccacatc ttccaattct ttacttggat
     6661 tggtcaccac catactcaga ttcacaacat caacatgatc ttcaatagcc tgctgaacag
     6721 ctttgacaag gtagtcattt tttatcgtcc cgtcatcatc cgttaccttg taggaaaaca
     6781 atcttgcttc cgggctcaat cccagcgtta gcacatgatt attcttagca ccaatgatac
     6841 tggcaatctt tgtcccgtga ccaatggtat caaagacaga ggttgaagtg gaaaaaactt
     6901 gcatatcctc aacataaaac tcatctaccg cttcttccct tataccagag tcaatgatag
     6961 caactctgac ctcctgagtc ggctttgctg tcggatcaat gttgggataa taacgcgatg
     7021 ttccccaacc tgtatgctgg tggttaagtg gaaaacccga aaattgacca agtggattgg
     7081 aaaccagccc ctctctaaat accaccgcac aaaccaaggc aagaagacaa ctaacaagcc
     7141 caaacagtct tagtattttt tgaatcaacc tgcaactcct tctaatttta tacaaacaca
     7201 tttattaatg tctatgccaa tatggactgt gaccaatcct aggagaacaa tttctatata
     7261 aatccgctct acagtaacgc aaattgggat tcttaatgat agattcataa acacattggc
     7321 taacaactgc catagctatg ttacaatctg aggtaataaa attttggtat ccccaaccat
     7381 tattatctaa acagtatgga agaccaccgc ctgaaagaat tgcatctgaa ttttctgcgg
     7441 tcttatcaat atataccatt gataacggta ccttcatatc agaatgattg taatccatag
     7501 tggcttcaat cataccttta atactctcca cctcatcagg agtcgcattc ggaaaagcct
     7561 catttggtag atctaagatt tcttcaaaac tatatagagg ctccgtctgt gctgcaacct
     7621 ctatttgttg ctccacaatc aactgacctt cagccatttc actaataaca acagcctcag
     7681 aatggtctcc gtgactagag tggtctccat gagactcagc aaacactaaa gaagctggaa
     7741 aaaccaatga aaacagcata gtaactgcta agaacttctt tttcataaga ctactcctat
     7801 cttttttata gtacatctac attgtatcat cttcaaaacg aaataaagtc cacttacaaa
     7861 tctgtaagtc aattttttaa acttacaaat atgtaagtca ttttaacaaa taaaatgttg
     7921 tgctatacta aaaagaaaaa gaggtgcgtt ctatgaaaaa gaatatatca attattgtac
     7981 tcgctttgtt gctatcaatt ccaatcgtta ttgacccatt atccaatcct gtccccattc
     8041 tcctaacttc ttatttttaa gactcaaatc ttaaaaaatg aacccggata atcgaagctg
     8101 tctgatcatc tatcaattcc tgtatagatt gaatgtaggt ttcgattatc tctttttctt
     8161 tgtctgaacg accattttcg atatagtcca atagcagacg ataatagcga gccattatct
     8221 ttacaaaggt atctttaaaa ctaatcatag actccatttt atctaagtaa ta
//
LOCUS       DASGAC010000090         8198 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.090, whole genome shotgun sequence.
ACCESSION   DASGAC010000090 DASGAC010000000
VERSION     DASGAC010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8198
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.090"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            10..468
                     /locus_tag="U1335_001461"
     CDS             10..468
                     /locus_tag="U1335_001461"
                     /inference="COORDINATES: protein motif:HMM:NF024940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5231928.1"
                     /translation="MTKELTSSQIEELKQALKKKSNARHHRKIQALTLYSEYHNLRSV
                     AKPVGFVHQTVRNLLNRYLDGGLQALLNENRGGRRRSYMTHEEEEAFLKEQLSSALNG
                     EFVTVSTLFEAYQEKVGRKTTREGFYALLKRHGWVKESRDSLRWEIKLTQ"
     gene            complement(511..834)
                     /locus_tag="U1335_001462"
     CDS             complement(511..834)
                     /locus_tag="U1335_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sulfur cluster assembly factor"
                     /protein_id="HEM5231929.1"
                     /translation="MTYTEDQIKDIQERIFHALEDVIDPELGIDIINLGLIYEIRFIE
                     GKAEIDMTLTTMGCPLADLITDQIHDVLKDVPEVTEVDVRLVWSPAWTVQKMSRYARI
                     ALGIK"
     gene            complement(968..2086)
                     /gene="rpoD"
                     /locus_tag="U1335_001463"
     CDS             complement(968..2086)
                     /gene="rpoD"
                     /locus_tag="U1335_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEM5231930.1"
                     /translation="MTNKKDKKTEVTTFDVQVAEFIRNHKKQGSATDDEINDQLVIPF
                     TLDADGIDDLLQRIQDAGISIVDKEGNPSARAMQVEEEPGLSDEELLGSTSAKVNDPV
                     RMYLKEIGVVPLLTNEEEQELALAVEAGDPEAKQRLAEANLRLVVSIAKRYVGRGMQF
                     LDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVET
                     INKLVREQRNLLQELGQDPTPEQIAERMDMTPEKVREILKIAQEPVSLETPIGEEDDS
                     HLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLED
                     VGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED"
     gene            complement(2089..3879)
                     /gene="dnaG"
                     /locus_tag="U1335_001464"
     CDS             complement(2089..3879)
                     /gene="dnaG"
                     /locus_tag="U1335_001464"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEM5231931.1"
                     /translation="MLSKDKITEIKQALNIVDVIGETVALTKAGRNYVGLCPFHGEKT
                     PSFNVIEDKQFYHCFGCGKSGDVFKFVEEVRGVSFADAAAILAEKAGFQVDVTPSYHQ
                     EEKRVSPHQVLYDIHRDAAKFYHALLMTTKMGEEARAYLHQRGLTDDVIKTFQLGLAP
                     AEQNILYQKLSGQYDEESLLNSGLFNPSENNIIYDAFQARIIFPLADEYGRIVAFSGR
                     IWTEEDRNNKQLAKYKNSRSTAIFNKSYELYHLDKAKAVIKKQRDAYLMEGFLDVIAA
                     HRVGIDNAVASMGTALTREHVAHLAKFCKKIVLTYDGDKAGQAATMKALDELQDFQVE
                     IVSLPDNMDPDEFLQKNSEEALQQVLTKSRISDVEFLIQYLKPENPDNLQMQIEFVDK
                     IAPIIAKVSSITAQNSYIYKVADLLSDFDYNQVEQAVNAVRLNQRQERTQQVFQSQTG
                     QSYLPPVQTIARITSLIRTENHLLYRMVEHPYILNEFRLREDFYFATPELQAIYDMLK
                     KSGEITSFELSQLNDSAQQAWYRMQEERLPNEVSPHEIEELEIRRDKELLKKENQHLA
                     RKIREHSHVGNADIALDELQKLLDRRRQME"
     gene            4061..4441
                     /gene="mscL"
                     /locus_tag="U1335_001465"
     CDS             4061..4441
                     /gene="mscL"
                     /locus_tag="U1335_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002933021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HEM5231932.1"
                     /translation="MLKDLKAFLFRGNVIDLAVGVIIASAFGAIVKSLVEDVITPLFL
                     TPALKAAGADKIADLSWNGVKYGNFLSAVINFLIVGTVLFFIVKAAEKAQSLAKKEEA
                     AVEEAPAGPTQEELLAEIRDLLKK"
     gene            complement(4521..5534)
                     /gene="galE"
                     /locus_tag="U1335_001466"
     CDS             complement(4521..5534)
                     /gene="galE"
                     /locus_tag="U1335_001466"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEM5231933.1"
                     /translation="MSILVTGGAGYIGSHTVVELLKLGKEVVIVDNLSNSSILVLDRI
                     ETITGKRPTFYELDVADKEALRQVFENENIEAAIHFAGYKAVGESVAKPIMYYENNIM
                     STLALVEVMAEFGVKKIVFSSSATVYGLNNPSPLVETMPTSATNPYGYTKVMLEQILR
                     DVEVADKEWSIALLRYFNPIGAHESGLIGEDPAGIPNNLMPFIAQVAVGKRPELSVFG
                     NDYDTVDGTGVRDYIHVIDLALGHIKALEKISTTAGVHTYNLGSGQGTSVLELVQAFE
                     KVNGVPVPYKIVDRRPGDVATCYANADKALAELNWKTEKTIEDMCRDTWNWQSKNPNG
                     YEG"
     gene            complement(5639..5815)
                     /locus_tag="U1335_001467"
     CDS             complement(5639..5815)
                     /locus_tag="U1335_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000048061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEM5231934.1"
                     /translation="MSKTVVRKNESLDDALRRFKRAVTKAGTLQETRKREFYEKPSVK
                     RKRKSEAARKRKKF"
     gene            complement(5913..6542)
                     /locus_tag="U1335_001468"
     CDS             complement(5913..6542)
                     /locus_tag="U1335_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01906 family membrane protein"
                     /protein_id="HEM5231935.1"
                     /translation="MRTKLQIIGTILFVLSAAVLGTIYLAWLVYPLEISFLGLEKVVY
                     MKAADISYNFNILMNYLTNPFASVLDMPNFSSSADGLKHFADVKHLFHLTQGIFILTL
                     PAFVLFVKNILLKGYGDLVKKVIFWTMLTPMIIGLLGVLVGFDQFFVLFHTVLFPGDS
                     TWLFDPAKDPVIYILPQEFFLHCFVLFFVLYEFFFGTILAWIGKKNRIG"
     gene            complement(6532..7305)
                     /locus_tag="U1335_001469"
     CDS             complement(6532..7305)
                     /locus_tag="U1335_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01457 family HAD-type hydrolase"
                     /protein_id="HEM5231936.1"
                     /translation="MTYTGYLIDLDGTIYEGKKRIPAGERFIHRLQERQIPYLFVTNN
                     TTRRPEMVQAMLAENFNIETPLETIYTASLATVDYMNDLGKEKTVYVIGEDGLKSAIF
                     EAGYVEDTENPAYVVVGLDTQLTYEKLTIATLAIQKGATFIGTNPDLNIPTERGHLPG
                     AGSLIALLKAATRVEPTFIGKPEAIIMDKALEILGTERSQTVMVGDNYLTDIRAGIDN
                     GFPTLLVLTGFTKPEEVADLPLAPTHVLNSLDEWSFDEN"
     gene            complement(7315..7932)
                     /locus_tag="U1335_001470"
     CDS             complement(7315..7932)
                     /locus_tag="U1335_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM5231937.1"
                     /translation="MSQDKWLEWAIRLQALAQTGLAYGKDVYDMERFEEIRQIAAEML
                     VEPSGQPLEVVKDLFCNETGYQTPKLDTRAAIFQEDKILLVQENDGLWSLPGGWCDVD
                     QSVKDNVVKEVKEEAGLDVEALRVVAILDKHKNNPAKSAHRVTKVFILCRLLGGEFQP
                     NSETVASGFFSLDDLPPLYLGKNTAEQLALCLEASRSEHWETRFD"
BASE COUNT         2395 a         1837 c         1525 g         2441 t
ORIGIN      
        1 cgaagtttta tgacaaaaga acttacgtcc tcccaaatcg aggaattaaa acaggcactt
       61 aaaaaaaaaa gcaatgctcg gcatcataga aaaattcaag cccttactct ctactctgaa
      121 taccataatt taagatctgt agccaaacca gtgggctttg tccatcaaac cgtacgaaac
      181 ttattgaatc gctatctaga tggaggtttg caggcacttc ttaatgaaaa ccgtggcgga
      241 cgtcgtcgct cttatatgac tcacgaagaa gaggaagcct ttctcaaaga acaactctca
      301 tctgccttaa atggagaatt tgtgactgtc tctactctct ttgaggctta tcaagaaaaa
      361 gttggtcgta aaacgactcg agaaggattt tacgccctac taaaacgcca cggttgggtc
      421 aaagaatcaa gagattcttt gaggtgggag ataaagctta cgcagtaagc aacaaaaatg
      481 gcttcaaacg ttcgaaacca ttttgttttt ttatttaatt cctaatgcaa ttcgagcata
      541 acgactcatt ttttgaacgg tccaagctgg tgaccaaacc agtctcacat ctacttctgt
      601 tacttctgga acatccttca gtacatcatg aatttgatcg gtaattagat cagctaatgg
      661 acaacccatg gtcgtcaagg tcatatcaat ttcagccttg ccctcaataa atcggatttc
      721 ataaattagc cctaaattga taatatcaat acctagctca gggtcaatca catcttcaag
      781 agcatgaaaa atacgctcct gaatgtcttt aatttgatct tctgtgtacg tcatttttct
      841 ctctttcttt ttcacaagtt caatactaga aaagaaacaa accaagtttg tgtcaaatta
      901 gtccactgga cgttacgctc cctttctaat ttcaaggcga gcggttgatt ttgtctccca
      961 gacaaaatca atcctctata aaatctctga gtggtttgct gcgggatggg tggcggagtt
     1021 tacggagggc tttggcttcg atttggcgga tgcgttcacg ggttacgtta aagactttac
     1081 caacatcttc aagcgtacgc attttaccat catctaaacc aaaacgaaga cgcaatacgt
     1141 tttcctcacg gtcagtaaga gtatccaata cctcatctaa ctgttcacga agaacgacac
     1201 gagttgtgta atcaactgga ttttcaatca cttcatcttc aatgaaatct cccaaatggc
     1261 tatcatcttc ttcaccgatt ggggtttcca aagacactgg ctcttgtgca atcttgagga
     1321 tttcacgaac tttctcaggc gtcatatcca tacgctcagc gatttgctct ggagttggat
     1381 cctgacctaa ttcctgcaag agattgcgtt gttcacggac caatttgtta atggtttcta
     1441 ccatgtgaac agggatacgg attgtacgcg cttggtccgc aatggcacga gtgatagcct
     1501 gacgaatcca ccaggttgca taggttgaaa acttgaaccc tttagagtag tcaaacttat
     1561 caacggcctt catcaagccc atgtttcctt cttggataag atcaaggaac tgcataccac
     1621 ggccgacata gcgtttggca atggatacaa ccaaacgcaa gttggcttca gccaaacgtt
     1681 gtttcgcttc tgggtcccct gcttcgactg ccagagccaa ttcttgctct tcctcgttgg
     1741 tcaaaagagg tacaacacca atttctttca aatacatgcg gaccgggtcg ttcacttttg
     1801 cagaagtgct tccgagcaat tcttcatcag ataatcctgg ttcttcctct acctgcatag
     1861 cacgagcaga agggttccct tctttatcaa caatcgaaat ccctgcgtcc tgaatacgtt
     1921 ggagcaaatc atcaattccg tcagcgtcaa gcgtaaatgg aataaccagt tggtcattga
     1981 tttcatcgtc tgtagctgaa ccttgttttt tatggttacg gataaattcg gcaacttgta
     2041 catcaaaagt agttacttct gtttttttat cttttttatt tgtcatattt actccatttg
     2101 tcttcttcta tcgaggagtt tttgcaactc atcgagggca atatctgcat ttcccacatg
     2161 ggaatgttca cggattttcc gtgctaggtg ctggttctcc ttctttaaca attccttgtc
     2221 tcgccgaatt tctaattctt caatttcgtg tggagacact tcattaggta aacgttcttc
     2281 ctgcatacga taccaagcct gttgagcgga atcgttcaac tgtgatagtt caaaactggt
     2341 aatttcccca gattttttta acatatcata aatagcttgc aattctggcg tcgcaaaata
     2401 aaaatcttct cgtaaacgga actcattgag aatataagga tgttcaacca tccgataaag
     2461 taaatggttt tctgttcgaa ttagactcgt tatacgagca atcgtttgga ctggtggcaa
     2521 ataagactga ccagtctgtg attgaaatac ctgttgtgtt ctctcctggc gctggttcag
     2581 acgaacagca tttactgcct gttccacctg attataatca aaatcagaaa gtaaatccgc
     2641 caccttataa atataagaat tttgagctgt aatggatgat actttggcaa taattggtgc
     2701 aatcttatct acaaactcaa tctgcatttg tagattgtca ggattttcag gtttcaagta
     2761 ttgaatcaaa aattctacat cgctgattcg tgacttggtt aaaacctgtt gcaaggcttc
     2821 ttccgaattt ttctgcaaaa attcatctgg gtccatatta tctggcaaac tcacgatttc
     2881 aacctgaaaa tcttgtagtt cgtccaacgc cttcattgta gcagcctgtc cagccttatc
     2941 cccatcataa gtcagaacaa ttttcttaca aaacttagct aggtgtgcaa catgctctct
     3001 tgtcaaagct gttcccatgg aagccactgc attatcaatt cctacacgat gagcagcaat
     3061 gacatctaga aaaccttcca tgagataggc gtcacgttgc ttcttaataa ccgctttagc
     3121 cttgtccaaa tgatacaatt catagctttt attgaaaatc gcagtactac gagaattttt
     3181 atacttagct aattgtttat tgtttcgatc ttcttcggtc caaatccgac ctgaaaaagc
     3241 tacaattcga ccatattcat ccgccaaggg gaaaataatc ctcgcttgaa aggcgtcata
     3301 aataatatta ttctcacttg gattgaacaa acccgaattc aatagacttt cttcgtcata
     3361 ttgacctgat agtttttggt aaagaatatt ctgttcggca ggagctaagc ctagctggaa
     3421 tgtttttatg acatcatctg tcaagccacg ttggtgtaga taagctctag cttcctcacc
     3481 cattttggtt gtcatcaaaa gggcatgata aaactttgca gcatcccgat gaatatcata
     3541 cagtacctga tgcggactaa cccttttctc ctcttgatga taggaaggag ttacatctac
     3601 ttgaaaccct gccttctcag ctaagatagc tgccgcatct gcaaaagaaa caccacgaac
     3661 ttcttcgaca aacttgaata catctccgga cttaccacat ccaaaacaat ggtagaactg
     3721 cttatcttca atcacattga aagacggggt tttctcccca tgaaaagggc aaagaccgac
     3781 ataattacgt ccggccttag tcaaagcaac cgtttcacca ataacatcaa cgatattgag
     3841 agcttgtttt atttcagtaa ttttatcctt tgaaagcaca ttccctcctc atatcatact
     3901 agctaattta aaaagtgaac actcttccct tagtttaaca tactctattg tatactaaat
     3961 acgggaaaat gtaaaatttc tgaaacaaat tacttgtaaa ataattttta acggttatta
     4021 tatatagagt aaaatattta tgaaaggaca tatttaggat atgttgaaag atttgaaagc
     4081 ctttttgttc cgtggaaacg tgattgattt ggctgtcggt gtgattattg catctgcatt
     4141 tggtgcaatc gttaaatcat tggttgaaga tgtaattact ccattgttct tgacgccagc
     4201 tttgaaagct gcaggtgcag acaaaattgc tgacttgtca tggaacggtg tgaagtacgg
     4261 taacttcttg agtgctgtaa ttaacttcct aatcgttggt actgttctct tcttcatcgt
     4321 taaggctgct gaaaaagctc agagcttagc taagaaggaa gaagctgctg ttgaagaagc
     4381 tccagcaggt ccaactcaag aagaattgct tgcagaaatc cgtgacttgt tgaaaaaata
     4441 atcaataaga tagtgaaaca ggcatgatgc ctgttttctt cttgtcaaaa aaggggagcc
     4501 aatcggcttc ccttattgtt ttatccttca tatccatttg gatttttaga ctgccagttc
     4561 catgtgtcac ggcacatatc ctcaatcgtt ttctctgttt tccaattgag ttcagctaga
     4621 gccttgtctg cattagcata gcaagttgcc acatcgccag ggcgacggtc tacaatttta
     4681 taaggtaccg gaacgccatt gactttttca aaggcttgaa ccaattccag tacactagtt
     4741 ccttgaccag aaccaagatt gtaagtatgt acacctgcag tagttgaaat tttttcaagc
     4801 gccttgatat gaccgagtgc taagtcaatg acgtgaatat aatcacgaac acctgttcca
     4861 tcaactgtgt cataatcatt accaaaaacg ctgagttctg gacgtttacc aactgctacc
     4921 tgtgcaataa acggcatcaa attattagga ataccagccg gatcttcccc aatcaagcca
     4981 gattcatggg caccgattgg gttgaaataa cggagcaatg caatactcca ctccttatct
     5041 gctacttcca catcacgcaa gatttgttcc aacataactt tggtatagcc gtacggattc
     5101 gttgcgctag ttggcatagt ttcaaccaaa ggcgatggat tattgaggcc ataaacagtc
     5161 gcacttgagg agaagacaat tttcttaaca ccaaattctg ccatgacttc taccaaagct
     5221 agggttgaca tgatattgtt ttcatagtac ataattggct tagctacgga ctcaccgact
     5281 gccttgtagc cagcaaagtg aatggctgcc tcaatgtttt cattttcaaa aacttggcgc
     5341 aaggcttcct tatctgccac gtccaactca tagaaagttg ggcgcttgcc agtgatggtt
     5401 tcaatgcgat ctaaaaccaa aatacttgag tttgaaagat tatccacgat aaccacttct
     5461 ttccccaact tcaacaattc gacaaccgta tgactaccaa tataacctgc accaccagta
     5521 actaagatac tcatcccttt actccttttc acttggacaa aaattctata tccctattat
     5581 atgttacttg ttgtaaaatg taaacaaaaa acagcctttc ggccgttttc aaattcaatt
     5641 agaatttttt acgcttgcga gctgcttctg atttacgttt acgttttaca gatggttttt
     5701 cgtagaattc gcgtttgcgt gtttcttgaa gagtaccagc tttagtaacc gcacgtttga
     5761 aacgacgaag agcatcatca agtgattcgt tcttgcgtac tactgttttt gacatttttt
     5821 tcactcccct caatttcaaa gtctttatca ttttactatg attcaactca tttgtcaata
     5881 ttttttaatt ctaaaatata aattttacgc tcttatccta tcctattctt ttttcctatc
     5941 cacgccagta ttgtcccaaa gaagaattcg taaaggacaa aaaataatac aaagcaatgc
     6001 aagaaaaact cttgtggcaa aatatatatg acaggatcct ttgcagggtc aaatagccat
     6061 gtagaatctc ctggaaatag caccgtatga aacaatacaa aaaactgatc aaagccaaca
     6121 agaactccta ataaaccgat tatcattggc gtaagcatgg tccagaaaat gaccttttta
     6181 accaagtctc cataaccttt tagcagaatg ttttttacaa aaagcacaaa ggcagggagt
     6241 gtgaggataa aaatcccctg agttagatgg aataaatgtt tcacatccgc aaaatgtttc
     6301 agaccatcgg ctgaggatga aaaattgggc atgtctaaaa cacttgcaaa aggattggtc
     6361 agatagttca tcaggatatt gaaattgtag gaaatatctg ccgctttcat gtagaccact
     6421 ttttccaacc ccaaaaaaga aatctcaagc ggataaacta gccaagctag gtagatggta
     6481 cctagaactg ctgccgacaa gacaaataaa atcgttccga taatctgtaa cttagttctc
     6541 atcaaaactc cattcatcta ggctgttgag gacatgggtt ggagccaggg gtaggtctgc
     6601 tacttcttct ggcttggtaa atccagtcag gactaaaaga gttggaaatc cattgtcaat
     6661 ccctgcacga atatccgtca ggtagttatc ccccaccata accgtttggc tgcgttctgt
     6721 gcctaaaatc tccagagcct tgtccatgat aatggcttca ggcttaccga taaaggtcgg
     6781 ctctactcgg gtagcagctt tcaaaagtgc aataagtgag cctgctcctg gcaagtgacc
     6841 tctttcagtc ggaatattca aatcaggatt ggtaccgata aaggtcgctc ccttttgaat
     6901 agccaaggtg gcaatggtca gtttttcata ggtcaactga gtatccaaac cgacaacaac
     6961 ataggctgga ttttccgtgt cttccacata acctgcctca aaaatggcag acttgagccc
     7021 gtcttctcca atgacataga ctgtcttttc cttgcccaag tcattcatgt aatctactgt
     7081 cgccaaactg gctgtataga tggtttcaag cggcgtctca atgttaaagt tttcagccaa
     7141 catagcctgc accatctcag gacggcgggt ggtattgttg gtcacaaata aatagggaat
     7201 ctgacgttct tgcaagcgat gaataaaacg ttcaccagca ggaatccgct ttttcccttc
     7261 ataaattgta ccatccaaat caatcaaata acctgtatat gtcatttttc ctccttaatc
     7321 aaatcgtgtt tcccaatgct cagaccgact agcttccaag caaagtgcta actgctcagc
     7381 tgtatttttc ccaaggtaga gcggaggcaa gtcatctagg ctgaaaaagc cactggcgac
     7441 tgtttccgaa ttaggctgaa actccccgcc aaggagacga cataaaatga agaccttagt
     7501 cacgcggtgg gctgacttgg caggattgtt cttgtgcttg tccaaaatcg caacgactcg
     7561 cagagcctcc acatccagcc ccgcttcttc ctttacttcc ttgaccacat tgtccttgac
     7621 agactggtcc acatcgcacc aaccacctgg taaggaccag agtccatcgt tttcctgaac
     7681 cagtaggatt ttatcctctt ggaaaatagc tgcgcgggta tccagcttag gtgtctgata
     7741 gcctgtttca ttgcaaaaca agtctttcac cacttccaag ggctgtccag atggctctac
     7801 caacatttcc gccgcaatct gacggatttc ctcaaatcgc tccatgtcat aaacatcttt
     7861 tccataggcc aagcctgtct gagccaaggc ttgcaagcga atagcccatt ccaaccactt
     7921 atcctgcgac atgacattct ccattcaatg tttacctaac ttgcttaata atcaacatta
     7981 taccacaaac cgaatcagcg agaaagaaac cagctgtata cgacaggtca tacacatgaa
     8041 gaaaagctct ataatttctg tagtgagtaa tatccaccgc tacagttgac aaagaaccgt
     8101 tatagtcaaa tgaattagct ttcagacaag gaactgaggg caggcagtac tagagcacgg
     8161 caatccgaaa gtgacgatgt atcaaagtta attcaaat
//
LOCUS       DASGAC010000091         8157 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.091, whole genome shotgun sequence.
ACCESSION   DASGAC010000091 DASGAC010000000
VERSION     DASGAC010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8157)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8157)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8157
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.091"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..1195
                     /locus_tag="U1335_001471"
     CDS             <1..1195
                     /locus_tag="U1335_001471"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231938.1"
                     /translation="HLNFSEILQVILAVNKRNKKTIGWVKQEAIVNSIFQFLEVPGKE
                     DEEFYVSTSDCSKYFNGRKNIPQKLKNYLAQQDFSQIVEKFAQRMMQYTETSTISVAK
                     KLYDVAGEQTNVPNSENQLFLEQEKRLHSFYDQEKYAHYIASTILFSLIHVPNILNCQ
                     QEETSLLDSLHFNQDLEEAIQQGRYYQSYERDIIIHPDMKKKEYKVLVKRQFISHYPN
                     PVHPHKDRFILNTFYSTAALRSNNHFISLKINQIDYSDRVQVLDEDLDIEKHRFPYKR
                     SLLVENLPASELYHIDLQTKYFASFPIRFGSFRLHSPAKRFKVTVRIRTNEKRKLCLT
                     LKNFGSFNKQISNIDRIEPNATMAYFENIDWTFPSSGYAYVVKPWNEFWQDFLPQNQK
                     KSAEE"
     gene            complement(1216..2550)
                     /locus_tag="U1335_001472"
     CDS             complement(1216..2550)
                     /locus_tag="U1335_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HEM5231939.1"
                     /translation="MLELFKAINNLVWGPPLLLLLVGTGVYLTLRLGVFQIGKLPTAF
                     RLIFSSDQSGQGDVSSFAALCTALAATVGTGNIVGVATAITTGGPGALFWMWVAAFFG
                     MATKYAEGFLAIKYRTKDANGQAAGGPMHYITLGMGKKWKPLAVFFAISGVLVALLGI
                     GTFSQVNSITASLETSFGLAPQLVSIVTAISIAFFIFGGIEKISDVSTKVVPFMAILY
                     ILASITVLAVHWNQLLPTLALVFKSAFTPAAAVGGFVGATVKEAIQRGIARGVFSNES
                     GLGSAPIAAAAAKSDNPVEQGLISMTGTFIDTLIICTLTGLTILVTGQWSVAGLSGAP
                     LTQAAFATVFGSTGSIALTISLVLFAFTTILGWSYYGERCIEFLFGTKSILPYRLLFV
                     AMVALGGFLKLDLIWTIADIVNGLMALPNLIALLALSPVIIKETRQYFAKRK"
     regulatory      complement(2656..2760)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            complement(2973..3605)
                     /locus_tag="U1335_001473"
     CDS             complement(2973..3605)
                     /locus_tag="U1335_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231940.1"
                     /translation="MFSIQSIQKKFGKRSLFSDVTLDLQAGKVYALIGASGSGKTTLL
                     NILAKLESYDAGDILYKGKELKKLKPHLFFREELGYLFQNFGLLESQTIRENLDLGLI
                     GQKLSKDERKSRQEAALDAVGLSYLDLSQPIYELSGGEAQRVALAKVILKNPPLILAD
                     EPTAALDPKSSQEIMDILLSLKSPDRLIVIATHNPLIWERADLIIKMEDL"
     gene            complement(3607..5592)
                     /locus_tag="U1335_001474"
     CDS             complement(3607..5592)
                     /locus_tag="U1335_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1430 domain-containing protein"
                     /protein_id="HEM5231941.1"
                     /translation="MKGKFVLVSTIILAVFMIWLGVSQKETMLVHYYPSVTALSVSED
                     VTYSDVRQRLEDYSQQTDSIIARRVIEPSTSGGRTFSYDNFSQSSLPRGLEEFQASEK
                     VESALLTKYFIFQGKATVEELRSLLVSLGFDEVQIRKPSTIATLLAFLTQGGQFLAIL
                     VFLITYMALVVIANVRQLRTAGIRLIAGDSRWHLFLLSLQENAKEIALTIPFAVLPAV
                     GLAYLIRLDGYSVYYLVAALVGYHFLLGLIVLFFATTFTLAIRTYHFLPLLKGKMPLQ
                     GILTIMVMGQMLALLVVSFGVAQTVYYSGIWQEYQVGAQQWENEGDYYSLAWNISADG
                     RSGLNSPENWYPLLKQALEEDGALFVKSNLNAYLMGSQLEDGTRLDSYHPAGNTLYVS
                     PNYLQIQDVNLAEGEVALPLQEGEFQLLLPEKLRPESDTYLHLYQDYINRMVIPANQA
                     RSATIKGKVAYLKNGQKQFIYNHRSGQHVQYLTDPILVVLAPSSLGKESADFWLNEVD
                     SSILFKNRDKLLRELKARNLFQFVNEVKSSSSLFTELLDRIRIETISTSMGAILGIVT
                     SIILFNTMNLLYFEEFKREICIKEIAGMDFLGIHQKYLTVQLLALLLALGASVVVTGH
                     IFISSISFVLFIINALYLLRWQARKEGAWNIRILKGA"
     gene            complement(5612..7597)
                     /locus_tag="U1335_001475"
     CDS             complement(5612..7597)
                     /locus_tag="U1335_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1430 domain-containing protein"
                     /protein_id="HEM5231942.1"
                     /translation="MKKVFTYLSTFSICLFCMWLVSLQLDSLIYHYYPSVSILSRGEE
                     VTYEEVSDALTNLAEKENSLIAKTITETDDSGRTTTSYDVFGKGELPQGLVKADRLVA
                     SQANLAENYYVVKGNLDIKAVENVLQSLGLVDSYIYRPTLLNSLSLFLGRGAPSLGLI
                     IFILTNLALTVVGQIVYLRSAGIEILSGVRSWQIASRFLRVDGRDIALATVGALVFGL
                     TAILILGWPMVYYRFVAIGIAFYACLFFFLSLSTSVGFMIALNISQLQKLIKGALPLK
                     AIFAILLVGQCLAVCIISIGASRTLTYVGVLHTLTIGEKVWQERQDVFSLSLNREAFI
                     ADEAMAQQQRMAWSHVILESYAKNNVMLVQHHLRHNTIKEHTIIESSKEIPLERVLYV
                     TPNYIQSEGGLYDFNQLEEIKQLGKGEIALLLPKSLQNDASVYQAYFEDMVGKLLADG
                     ERSISLHSNVYYISDEKRWFIYNHTPINYEQFLQAPLIVVLSPESFEETSYFWENALP
                     DFVFFKDKEMLEQLLDKYNLQNTIGSLLSSKQHYNTLRKNVQLEILMTLSPTILGIFT
                     SILLFNTMNLLYFETFKREIAIKRIAGMRFIELHGSYLGEQVGSALIGMGLAMFMTKS
                     VIVSLGVVVALLINSWMLLNNQAKREEKIQLSVLNGR"
     gene            complement(7649..7948)
                     /locus_tag="U1335_001476"
     CDS             complement(7649..7948)
                     /locus_tag="U1335_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactococcin 972 family bacteriocin"
                     /protein_id="HEM5231943.1"
                     /translation="MFKTSRKLAFLLVLLTMSFAVPVLAISVEGGEWYYGGHHDPSNW
                     GAYSSYYHARERHYARVSSTQRPGKSSKVYAGPGGVAYAFINTDIGEHVDFGYGF"
BASE COUNT         2600 a         1898 c         1421 g         2238 t
ORIGIN      
        1 acacctaaac tttagcgaaa ttttacaggt tatcctagca gtcaataaga gaaataagaa
       61 aactatcggc tgggttaagc aagaagctat tgttaacagt atctttcaat ttctagaagt
      121 ccctggcaag gaagatgagg aattttatgt tagcacttcg gattgctcta agtatttcaa
      181 cggaaggaaa aatatccctc agaaactcaa gaactatctg gcgcaacaag atttttctca
      241 aatcgtagag aaatttgcgc agcgaatgat gcaatataca gaaacatcga ctattagtgt
      301 tgctaaaaaa ttatatgatg ttgctggtga gcaaacaaat gtacccaact ctgaaaacca
      361 actatttttg gaacaggaaa aaagattaca ctctttttat gatcaggaaa aatatgccca
      421 ctatatagca tcaaccatcc tcttttccct tatccatgtt cccaatatcc ttaactgcca
      481 gcaagaagaa acctcccttc ttgatagcct ccacttcaat caggacttag aggaagctat
      541 ccaacaagga cgctattacc aatcttacga acgggacatc attatccatc ccgatatgaa
      601 gaaaaaagaa tataaagtcc tagtcaaacg gcagttcatc tcccactatc ccaatcctgt
      661 ccatcctcac aaggaccgat ttatcctaaa caccttctac tctacagctg ccttacgaag
      721 caataatcac tttatcagtc taaaaattaa ccaaatcgat tattccgata gggtgcaggt
      781 tctggacgaa gacttggata ttgaaaaaca tcgcttccct tacaaacgta gcctcttagt
      841 agaaaatctt cctgcttctg aactctacca cattgacttg cagaccaagt actttgccag
      901 ctttcccatt cgtttcggca gttttcgcct gcattctccg gccaaacgtt tcaaggtcac
      961 tgtccgtatt cggaccaatg aaaaacgcaa actctgcctg accttgaaaa acttcggcag
     1021 cttcaacaaa caaatttcta acatcgaccg tatcgagcct aacgccacca tggcctactt
     1081 tgaaaatatc gactggacct tcccgtcatc aggctatgcc tacgttgtta aaccctggaa
     1141 tgaattttgg caggattttc taccacaaaa ccagaaaaaa agtgcagagg aataaaatcc
     1201 tttgcactta tttttttatt tcctctttgc aaaatactgg cgtgtctcct tgatgataac
     1261 aggagagaga gccaacagag caatcaaatt cggtagggcc atgagaccat ttacaatatc
     1321 ggcaatggtc caaatcaagt ccagcttgag gaagccacca agggctacca ttgccacaaa
     1381 taacagacga taaggcaaga tggatttggt accaaataga aactcaatac agcgttcacc
     1441 atagtaagac catccgagaa tagttgtaaa agcaaaaagt accaaactaa tcgtcaaggc
     1501 aatagatcct gtactgccaa aaactgttgc aaaagctgct tgagtaagtg gagcacctga
     1561 caaaccagca acagaccact gacctgtcac caaaatcgtc aagccagtca aggtacaaat
     1621 gatgagggta tcaataaaag tacctgtcat agaaatcaac ccttgctcaa caggattgtc
     1681 tgacttggct gcagctgccg caatgggagc agaacccaga cctgattcat tggagaagac
     1741 tccgcgagca attccgcgtt gaatggcttc ttttaccgtt gcccctacaa aaccacccac
     1801 agcagctgct ggagtaaagg cagatttgaa aactaaggca agggttggca agagttgatt
     1861 ccaatgcacg gccaagacag taatacttgc taagatatat aaaatcgcca tgaaaggaac
     1921 aactttggtc gaaacgtcag agattttttc aatcccacca aagataaaga aagcaattga
     1981 aatagctgtc acaatgctga ccaactgggg agctaatcca aaactcgttt ccaaagaagc
     2041 agtgatggaa ttaacttgcg aaaaagttcc aatccccaaa agagcaacca aaacacctga
     2101 aatagcaaag aagactgcta gaggtttcca ttttttgccc atccccaagg tgatatagtg
     2161 cataggcccg cctgctgctt gcccattggc atccttggtt ctatatttga tggccaaaaa
     2221 gccttccgca tacttggttg ccattccgaa aaaggccgca acccacatcc agaaaagagc
     2281 cccaggacca cctgtagtaa tagctgtcgc aactccgaca atatttcctg taccaactgt
     2341 cgctgccaaa gctgtacaaa gtgccgcaaa gctggacaca tctccctgtc cagactgatc
     2401 actggagaaa atcagacgaa aagccgtcgg caatttgcca atctgaaata ctcccaaacg
     2461 aagagtgaga taaacacccg ttccgaccaa tagtaacaag aggggcggtc cccaaacaag
     2521 attgttgata gccttaaata gttctaacat agttcctcct aagcgtttct aatccgataa
     2581 agctgccgga aaaacaaaaa gaggctgaac acttcaacct ctagaatcaa cgtgaaaata
     2641 tagaaaaagc ctatttttca acgctctgtc cttttacctg agagtttcag tagctctact
     2701 tttccaagca gaactacctt gccccttcgg tgccaaaatg gtctctccag agttccgtcc
     2761 attgaacagt cagtttccct tctacccaat atcaaccgat tattcagttt tatctggttt
     2821 tattttaatc taatttcacg aaaaaatcaa gaatattttc tgatactcaa tgaaaatcaa
     2881 aagtagccta ggaaacggag ccgaagatag aactggggtt catcaaggta agttgacaac
     2941 ggataatttt gattttcgaa gagtaggaat ttttacaagt cttccatttt tatgataagg
     3001 tctgctcgct cccaaatcaa aggattatgg gtcgcaatca caattaaccg atctgggctc
     3061 ttcaaggata acaaaatatc cataatttct tgggagctct taggatctaa ggcagccgtc
     3121 ggctcatctg ccaaaatcaa tggcggattt ttcaggatga ctttagcaag agctacccgc
     3181 tgggcttccc ctcctgagag ttcatagata ggctgggaca ggtccagata agacagacca
     3241 actgcatcaa gtgccgcttc ctgcctcgat ttcctttcat ctttagataa tttctgacca
     3301 atcagtccca aatccagatt ttctctgatt gtctgacttt ctaaaagacc aaaattctga
     3361 aagagatagc ctaattcctc cctaaaaaag agatggggct tcaacttttt caattccttt
     3421 cccttgtaga gaatgtcacc tgcatcatag gactccaact tggctaaaat attcagcaag
     3481 gtcgtttttc cactaccact ggcacctatc aaagcataga cctttccagc ctgcaagtct
     3541 agcgttacat cagaaaacaa gctgcgcttc ccaaatttct tttgaattga ttggatagaa
     3601 aacatactag gctcctttca aaatacggat attccaagct ccttctttcc tcgcctgcca
     3661 cctcaataag taaagggcat tgattataaa caagacaaaa ctgatactac ttatgaatat
     3721 gtgacctgtt actactacgc tcgctcccaa ggctaataaa agggccagta gctgaaccgt
     3781 taggtatttc tgatgaatgc ccaaaaaatc catccctgca atttccttga tgcaaatctc
     3841 acgtttaaat tcttcaaagt atagaagatt catggtatta aacaggataa ttgatgtcac
     3901 aatccctaaa atggcaccca tagatgttga aatggtctct atccgaatac gatctaaaag
     3961 ttccgtaaag agggaagaac tacttttcac ttcattgaca aactgaaaca gatttcttgc
     4021 cttcaattcg cgcaaaagtt tatctctatt tttaaataag atactgctat ctacttcatt
     4081 caaccaaaaa tcagcagatt cttttcccag acttgacggt gccaacacaa ctaaaatagg
     4141 gtctgtcagg tattgcacat gttgaccaga acgatgattg tagataaact gcttctgccc
     4201 attttttaaa taggcaactt ttcccttaat ggtagctgag cgtgcttgat tagcaggtat
     4261 aaccatacga ttgatataat cttggtaaag atggagataa gtatcgcttt cagggcgcaa
     4321 tttttcaggc aacagaagtt gaaattctcc ttcttgtaga gggagtgcta cttctccttc
     4381 tgctaagttt acatcctgta tctgcaaata atttggacta acgtagaggg tgtttccagc
     4441 tggatggtag ctgtcaaggc gtgtcccatc ttccagttgg gagcccatta aataggcatt
     4501 caaattactt ttgacaaaga gcgcgccgtc ttcctccaaa gcttgcttta gtaaaggata
     4561 ccaattttca ggcgaattta gtcctgagcg accatccgca gaaatattcc aagccaaact
     4621 atagtaatcc ccttcattct cccactgctg ggcacctact tggtattctt gccaaatccc
     4681 tgaataatag acggtttgag ccacaccaaa tgacaccacc agtagagcca gcatttgtcc
     4741 cataaccata atggtcagga ttccttgcag gggcatcttc ccttttaaca agggtaaaaa
     4801 gtgataggtc cgaatggcca aggtaaatgt agtagcgaaa aaaaggacaa tcaaaccaag
     4861 caagaaatga tagcccacta gagctgcgac cagatagtag acagaatagc catctaatct
     4921 aatgaggtag gccagtccaa ctgctggaag aaccgcaaat gggatagtta gagctatctc
     4981 tttcgcattt tcctgtagag atagtagaaa taaatgccaa cgtgaatctc ctgcaatcaa
     5041 acggatacct gctgtacgca actgccttac attggcaatc acgaccaaag ccatataggt
     5101 aatgagaaag accagtatgg ctaagaattg accaccttgt gtcagaaatg ctagtaaagt
     5161 agcaatagtc gatggcttcc gaatctgaac ttcatcaaat ccaagcgaaa caagaagaga
     5221 ccgaagctcc tctaccgtcg ctttcccttg gaaaataaaa tatttggtta aaagtgccga
     5281 ctccaccttt tctgatgcct gaaattcctc tagtcctctt ggtagggaag actgactaaa
     5341 attatcataa gaaaaggtac gtccacctga tgtacttggc tcaatcactc gtctggcaat
     5401 gatactatcc gtttgttgag aatagtcttc taatcgctgt cgtacatctg agtaagtcac
     5461 gtcctcagat accgacaagg cggtcacaga aggataataa tgaactagca tagtctcctt
     5521 ttgactgacg cccaaccaaa tcataaagac ggctagaatg atcgtcgata caagtacaaa
     5581 ttttcctttc attctaactt cacctcatta actatctgcc atttaataca ctcaactgga
     5641 ttttttcttc ccttttcgct tgattgttca gtaacatcca actatttatc aacaaagcca
     5701 caactactcc taggctaaca ataactgact ttgtcataaa cattgccaaa cccatcccaa
     5761 taagagcgga gccgacttgt tctcctagat aagaaccatg caattcgata aaacgcatcc
     5821 ctgctatccg cttgatagct atttctcttt tgaaggtctc aaagtataga agattcatcg
     5881 tattgaacaa tagtatggaa gtgaatattc caaggattgt cggagatagg gtcataagaa
     5941 tttcaagttg aacatttttt ctcagggtgt tgtaatgttg cttgctagat aacaagctac
     6001 ctattgtgtt ttgtaaattg tatttgtcca acagttgttc cagcatctct ttatctttga
     6061 aaaacacaaa atctggtaac gcattttccc aaaaatagga cgtttcttca aaactttcag
     6121 gtgatagaac aacaatcaac ggagcctgta aaaattgctc ataatttatc ggagtatgat
     6181 tgtaaatgaa ccatcgcttc tcgtctgaaa tgtaataaac atttgaatgc aaacttatgg
     6241 atctttctcc atccgcaagc aattttccta ccatgtcctc aaaatacgct tggtaaacac
     6301 tcgcatcatt ttgcaaactc tttggtaata ataatgcaat ttctccttta cctaattgct
     6361 ttatctcttc cagctgattg aaatcgtaca gcccaccttc tgattgtata taattcggcg
     6421 tcacatacag caccctttct agaggaattt ccttgctgga ttcaatgatg gtatgttctt
     6481 ttattgtgtt atgccgtaaa tggtgctgga ctaacattac attatttttc gcatatgatt
     6541 ctaaaattac atgagaccaa gccattcttt gttgctgggc catcgcttca tcagctatga
     6601 atgcttcacg attcaaagac agactaaaaa catcttgtct ttcttgccaa accttttctc
     6661 ctatcgttag tgtatggaga actccaacat atgtcaacgt tcgactagca ccaatagaga
     6721 tgatacaaac cgctaaacac tgacctacta gtaaaatagc aaaaatcgcc ttgagaggca
     6781 aagccccctt aattagcttt tgtaactgag aaatgtttaa tgcaatcatg aatccaacac
     6841 ttgtcgataa agataggaaa aaaaacaaac aagcataaaa ggcaataccg attgctacaa
     6901 aacgataata taccattggc caacccaaaa ttaaaatagc agtcagtccg aaaacaagcg
     6961 cccctactgt agccaatgct atatctcttc catccactct taaaaaacga ctagcaatct
     7021 gccaactcct cacacctgaa agtatctcta tccctgctga ccgcaagtag acaatctgcc
     7081 caactactgt caatgcaaga ttggtgagta taaagataat aaggcctaag ctcggagctc
     7141 ctctaccaag aaatagactt aaactgttta atagggtcgg tctataaata tagctatcca
     7201 ccaatcccag tgactgtaag acgttttcta ccgctttgat gtccagattc ccttttacaa
     7261 catagtaatt ttcagctaag ttggcctgac tagctactaa cctatccgct ttgaccaagc
     7321 cctgtggaag ctcccccttc ccaaaaacat cataactggt agtagttcgc ccactatcat
     7381 ctgtttctgt tattgtctta gcaattagac tattttcctt ttcagctaaa tttgtcaagg
     7441 catccgacac ttcttcatag gtcacttctt cccctcgact taatatggaa accgatggat
     7501 agtaatgata aattaaagaa tcgagttgca gactcactaa ccacatacag aagagacaga
     7561 tgctaaaagt agataaataa gtaaatactt ttttcataac gaaccccatt tgcacaaaaa
     7621 ggaggtggac tccaccacct ccctatcatt agaacccgta accaaaatca acatgttctc
     7681 caatatctgt attaataaat gcataagcca ctccacctgg accagcatat acctttgacg
     7741 acttccctgg acgctgagta ctactaactc tcgcataatg tctctcacgg gcatgataat
     7801 aacttgaata tgctccccaa ttacttggat catgatgacc tccgtaatac cactctccac
     7861 cttctacaga gatagcgagg accggaactg caaaactcat cgtcaataac accaataaaa
     7921 aagctagttt tcttgatgtc ttaaacatta ctacctctcc tttccgtacg ctttaatact
     7981 aactgactta aaacaattat aacccctatt catgaccaat atcgtttcct aaattttcct
     8041 cctttcccag tcactattaa ggatttataa aacaatttaa aatagtaaat ataactactc
     8101 ccttcggtga ataatatcag gttcccatcc ctgtgttttt actttagcta atgggaa
//
LOCUS       DASGAC010000092         8146 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.092, whole genome shotgun sequence.
ACCESSION   DASGAC010000092 DASGAC010000000
VERSION     DASGAC010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8146
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.092"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(497..1720)
                     /locus_tag="U1335_001477"
     CDS             complement(497..1720)
                     /locus_tag="U1335_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM5231944.1"
                     /translation="MKRKRITKPKHMRRKRKTPIMKNNKKMLYTSSLALSLFSTGMIS
                     TNVLAIEWAPRTVSEISPEIVQEEGKMTYTVQYGDTLSAIASAMNIDMDLLAKINQIA
                     DVNLIFPDTVLTTTVDQNNQVTQVEIEASVQGNTNETVQATVDLTTNQVTVEDTVVPL
                     DQISSVTDSAPVEEVVDQPVAEALVEEVVEQPVVEAPVEEVVEQPVVEAPVEEVVEQP
                     VAEAPVEEVVEQPAVEAPVEEVVEQPVVEAPVEEVVEQPVEEVVEQSAVEAHVEQPVV
                     ETPQVTALSTTTTSTSAYDVGLQPQVAAFRAEVANAFGITSFSGYRPGDSGDHGKGLA
                     IDFMVPQSSALGDQVAAYAVANLASKNINYIIWKQRFYAPYASIYGPAYTWNLMPDRG
                     SITENHYDHVHVSFN"
     gene            complement(1949..2932)
                     /locus_tag="U1335_001478"
     CDS             complement(1949..2932)
                     /locus_tag="U1335_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM5231945.1"
                     /translation="MEVQMKYKWATLGTGVIANELVQALQAMGGNLYSVANRTYDKGV
                     EFAQKYGIEKVYREIDEVFEDPEVDIIYISTPHNTHIHYLRKALKAGKHVLCEKSITL
                     NSEELAEAIQLAEENQVILAEAMTIFHMPIYRQLSEVVASGKLGNLKMIQMNFGSYKE
                     YDMTNRFFNKNLAGGALLDIGVYALSFVRWFMTEKPSQVLSQVKLAPTGVDEQVGILL
                     SNDAGEMATIALTLHAKQPKRGTIAYDKGYIELYEYPRGQKAVITYTEDGSQEVIEAG
                     QTTEALSYEVADMEKAVAGIENTMHLAYTRDVMEIMTQLRKEWGLVYPEEM"
     gene            3017..3907
                     /locus_tag="U1335_001479"
     CDS             3017..3907
                     /locus_tag="U1335_001479"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HIII"
                     /protein_id="HEM5231946.1"
                     /translation="MNTVVLKASAQQKQAMMAHYDRYRQTSKNPYIEAFFKLTGASLS
                     IYTSGKVVFQGEMAEQEAGLWGYEPESSGQTTIPGQDLPMIGTDEVGNGSYFGGLAVV
                     ASFVRPEDHAFLKSLGVDDSKKMTDQKICQIAPLLKEKIPHQALLLSPKKYNEVIEQG
                     YNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKYLKKEANQFANSVTLEE
                     KAEGKYLAVAVSSIIARAMFLENLVQLGQLVGRSLPSGAGSKSDQVAASILKDYGMAG
                     LNQTAKLHFANTQKAQKLLK"
     gene            3918..4547
                     /gene="lepB"
                     /locus_tag="U1335_001480"
     CDS             3918..4547
                     /gene="lepB"
                     /locus_tag="U1335_001480"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEM5231947.1"
                     /translation="MGAIQKTKRSPLVAFLAEWGIFLLFMAAFFASRYFIWNPVSVDG
                     HSMDPTLQHQEKLIMLKTTSIDRFDIVVASETDSDGKEKLIVKRVIGMPGDTIRYEND
                     VLYVNDQKVDEPYLDEYLAAFQKDKLQEVYSYNKQFQAVAQSAEAFTQDANGYVDFTV
                     TVPEGQYYLMGDDRLVSLDSRSVGTFSRENIKGEVVFRMWPLNRIGTVD"
     gene            4766..7258
                     /locus_tag="U1335_001481"
     CDS             4766..7258
                     /locus_tag="U1335_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RecD-like DNA helicase"
                     /protein_id="HEM5231948.1"
                     /translation="MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVT
                     GTIADVIEGEDYRFYGNLVTHPKYGQQLQITRYERSKPTSAGLVKYFSSEHFKGIGRK
                     TAEKIVELYGEDTIDKILAEPEKLTQITGLSRKNMQAFVEKLRLNYGTELILAKLAEY
                     GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRF
                     RAGMLFSLIHRSMETGDTYVEARDLLEATLELLEKSRHTELDPAAVAHELTGLIADDK
                     VQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFNPFPRADVETAIAELETMSSLTYDD
                     IQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAP
                     TGRAARRMNELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQ
                     LFQNISSQTQVLIVGDAEQLPSVSPGQVLADLLKIDKLPSITLERIYRQSDDSTIVTL
                     ASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQILAPMY
                     RGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGY
                     ITDLLPAKYTDSKQDEITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILP
                     ITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAVKNAGTVRKTYLVPRFQGEMA
                     EQDSKDALSEKAESKTATTTQTQPPTQPDRKELVKVVNENNQQLSLLDQDQPEKTSPQ
                     PTEYILTVDNLLTIDPMIGIEQADIEEFFRKR"
     gene            7364..8059
                     /locus_tag="U1335_001482"
     CDS             7364..8059
                     /locus_tag="U1335_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231949.1"
                     /translation="MKKIFNYSVLLLSVTCLLTACSAKKQKSQTEATTSKTTQASTKQ
                     TSSSKPASSQETTTEANSSAEASQQNQETQNSQVEESVLSTETTHTQLLTLPATTIPD
                     SLVGKWQGSSQQARNIEVTISADGTFTTYEDFRLSENEEGEHLIHTYTARVTDLVEYA
                     PNHYLIRGAEGEYSALLPGMTGLGGRIAPGFILEGGQYKVVMWGNPADPAVEAKYNLV
                     SEPNVFVTLDKVE"
BASE COUNT         2365 a         2000 c         1630 g         2151 t
ORIGIN      
        1 ttgccgtact ctacgaaagt gacttgtttc gcaagtctta ttttcaaccg ggagtgggaa
       61 agaactcgac tggtctaaaa agagttcgtc aacaattttt cgttttaagt tgttgagctg
      121 aaacagtcta ttcccagact gtttcactcc cacccccgca cagctcaaac tgtctgggag
      181 acagtttgag gttggagatg aagcgaactc tgttcgcatc agtcgtaatg gtcggatttg
      241 gagtgtaaaa cacgaattgc tgagatttgc ttcgcaaatc ttatctccaa cctttaacag
      301 tccactggac tgttaaaccc aatcaaccac tgcgctgaga tgttgacacg aactctaaga
      361 agtggcgctg ggctttttgc ccatccaagc tacctacacc tcagttcctt gtctgaaagt
      421 taattcattc gactatatta ctacatataa agcaataacc gtttcagata aggctgaaac
      481 ggttattttt gtaagtctaa ttaaaagata cgtgcacatg atcataatgg ttttcagtaa
      541 tacttccacg gtctggcatc aagttccaag tatatgcagg tccataaata cttgcatatg
      601 gagcatagaa gcgctgtttc caaatgatgt agttgatatt tttagaagct aagtttgcaa
      661 ctgcataagc cgccacttga tccccaagtg ctgaactttg tggtaccatg aagtcaattg
      721 ccaatccctt accatggtcg ccagaatcac caggacggta acctgagaaa gaagtaatac
      781 cgaaggcatt tgccacttct gcgcggaagg ctgctacctg aggttgcaaa ccgacatcat
      841 aagcacttgt acttgttgta gtggttgata gggctgtcac ttgtggagtt tcaactacag
      901 gctgttctac atgtgcttct actgcagact gctctacaac ttcctctaca ggctgttcta
      961 caacttcctc tacaggtgcc tctactacag gttgctctac aacttcctct acaggtgctt
     1021 ctactgcagg ctgctctaca acttcctcca caggtgcttc tgctacaggc tgctctacaa
     1081 cttcctctac aggtgcctca accacaggtt gctctacaac ttcctctaca ggtgcttcta
     1141 ctacaggctg ttccacaact tcctctacaa gtgcttctgc tacaggttgg tccacaactt
     1201 cctctacagg tgctgagtcg gtaactgatg aaatttgatc caagggaaca accgtatcct
     1261 caaccgttac ttgattggtt gttaggtcaa cagttgcctg aacggtctca tttgtgtttc
     1321 cctgaacaga agcttcaatc tcaacctgag tcacttgatt attttggtca acagtcgtcg
     1381 tcagtaccgt atcagggaaa atcaagttga catctgcaat ttgatttatt ttcgccagca
     1441 aatccatatc aatattcata gctgaggcga tggcagataa ggtatctcca tactgaacag
     1501 tataggtcat ctttccttct tcttgtacaa tttctgggct aatttcagaa acagtacgtg
     1561 gagcccattc gatggctaaa acatttgtcg aaatcatccc tgtactaaag agggaaagag
     1621 ccaatgaaga tgtgtataac atcttcttat tgtttttcat gatgggtgtt tttctcttgc
     1681 gacgcatatg cttgggcttt gtaattcttt tacgtttcat tttctgttcc ttttctgatt
     1741 tgataatcct atcatatctg aatccgattt gaaatacaag cacctagaga gcttttaaat
     1801 aaactgtatc cactatgtaa tcttagacat ttttcgtcat caaatccata tacttgtcac
     1861 ataaccgaca cattaagaaa aaagaacaag taggagacca ccaacaaccc atgacttgtt
     1921 ccttagttct tattctaata acctttctct acatttcttc tggataaacc aagccccatt
     1981 ctttgcggag ttgggtcatg atctccataa catcccgagt ataggctagg tgcatggtgt
     2041 tttcgatgcc tgcgacagcc ttttccatat ccgccacttc ataagagaga gcctcggtag
     2101 tttggcctgc ctcaatgact tcttggctac cgtcttcagt ataggtaatg actgccttct
     2161 gaccacgagg atactcgtag agctcgatgt agcctttgtc gtaggcaata gtaccccgtt
     2221 ttggctgttt ggcatggagg gtcagggcga tggtcgccat ttcccctgca tcattgctga
     2281 gcaaaatccc tacctgctca tccacacctg tcggagccaa tttgacctga gacaagacct
     2341 ggctaggctt ttccgtcata aaccaacgga caaaggacag agcgtagaca ccaatatcca
     2401 agagggcacc gccagccaag ttcttattga aaaagcggtt ggtcatgtcg tattccttgt
     2461 agctgccaaa gttcatctga atcattttca aatttcccag cttgccactt gcaacaactt
     2521 cgctcaactg acgatagatt ggcatatgga aaatggtcat ggcttctgcc aggataacct
     2581 gattttcctc cgccaattga atcgcttctg ctaattcttc tgaattaagc gtaatcgact
     2641 tttcacagag gacatgtttc ccagccttca aggcctttct caaataatgg atatgggtat
     2701 tgtgaggcgt agaaatatag ataatgtcta cttcaggatc ctcaaacact tcatcgattt
     2761 ctcgataaac tttctcgatg ccatattttt gcgcaaattc cacacccttg tcataggtac
     2821 ggttggccac cgaataaaga tttcctccca tagcctgcaa ggcctgaacc aattcattgg
     2881 caatgacacc tgttcccaga gtcgcccatt tatacttcat ttgaacttcc atagtctacc
     2941 tcactttctc cttctattat agtaaaaacc acccttttct gcacactcta actagcattt
     3001 gtgttacaat aagaacatga ataccgttgt actaaaggca tctgcccagc aaaaacaagc
     3061 catgatggct cactatgacc gctatcggca gaccagcaaa aatccttata tagaagcatt
     3121 tttcaaactg accggtgcca gcctgtccat ctacacttct ggaaaagtcg tttttcaggg
     3181 ggaaatggca gagcaggaag cagggctctg gggctatgag ccagaaagct ctggacagac
     3241 gaccatacct ggtcaagacc tacccatgat tgggacggat gaagtgggaa atgggtctta
     3301 ttttggaggt ttagcagtcg ttgctagttt tgtccgccca gaagaccatg cctttctcaa
     3361 gtcgcttggt gtcgatgatt ccaaaaaaat gacagatcaa aaaatttgcc aaatcgcccc
     3421 tctcttaaaa gagaaaatcc cccaccaagc tctgctattg tcaccgaaaa aatacaacga
     3481 agtcatcgag caaggctaca atgcggtatc tgtcaaggtc gccctacaca atcaggctat
     3541 tttcctactc ttgcaaaagg gtgtccagcc tgagaagatt gtcattgacg ccttcacttc
     3601 cagtcaaaat tatcaaaaat acttgaaaaa ggaagccaac caatttgcca actccgtcac
     3661 tctggaagaa aaggctgagg gcaagtacct ggctgtggca gtatcttcta ttattgctag
     3721 agctatgttt ttagaaaatc ttgtccagct tggtcaattg gtaggcagaa gcctgccttc
     3781 aggagctggc agtaagtccg accaagtcgc agcaagcatc ttaaaagact atggtatggc
     3841 tggtctcaac caaactgcca aactccactt tgccaatacg caaaaagcac aaaaattatt
     3901 gaaatgagga aaaaaatatg ggagcaatcc aaaaaacaaa acgctcacca ctagtcgcct
     3961 tcttagctga atggggcatc tttttactat ttatggcagc tttttttgcc agtcgttact
     4021 ttatctggaa tcctgtctct gtcgatggcc attccatgga cccaacgctt caacaccaag
     4081 aaaaactcat catgctaaaa acaacctcta tcgaccgctt tgatattgtt gtagccagtg
     4141 agacagacag cgacggcaag gaaaaactga ttgtcaaacg tgtgattggt atgccaggtg
     4201 acaccattcg ctacgaaaac gatgtcctct atgttaatga ccaaaaagtg gacgagcctt
     4261 acttagatga atatctcgct gcattccaga aagataaact tcaagaagtc tattcttaca
     4321 acaaacaatt ccaagctgtg gcccaatctg ctgaagcttt cacacaagat gccaatggtt
     4381 acgtagactt taccgtgaca gtcccagaag gacaatacta cctgatggga gatgaccgcc
     4441 ttgtctcact agatagtcgt agtgtaggaa cattttcccg tgaaaacatc aaaggagaag
     4501 ttgtctttcg catgtggcct ctcaaccgta ttgggactgt tgattaatac tcttcgaaaa
     4561 tcaaaactat ccgttgtcaa gagccttgat gagtgaaaag ctccgatgga gcttttcagc
     4621 ctgttacctt gaaacaagac agtaacagag ttctatcatc agcttcgttt cctaggctat
     4681 ttttgatttt cattgagtat aacacaaaca agtttggagc aatccgttcc aaacttcttt
     4741 ttcattatta ttggaaataa actctatgaa cgaagtgtat tttaccggca ctattgaccg
     4801 gattattttt gaaaatccta gtaattttta taaaatcctt ctccttgaaa tcgaggagac
     4861 agacgcagac tatgatgact acgaaattat tgtgactgga accattgccg atgtcattga
     4921 aggagaagac tatcgtttct atggcaatct agtcacccat cccaaatacg gtcagcagtt
     4981 gcaaatcaca cgttacgaac gcagcaagcc cacttctgct ggtctggtta agtatttctc
     5041 cagcgagcat ttcaagggaa tcggtcgcaa aacggccgaa aaaattgttg agctctatgg
     5101 cgaagatacc attgataaga ttttagctga acctgaaaaa ctaacccaaa tcacaggtct
     5161 atcccgcaag aacatgcagg catttgtcga aaaactccgc ctcaattatg gaaccgagct
     5221 gatcttggca aaactagctg agtatggtat tcccaataaa ttggcctttc aaatccaaga
     5281 ccagtataaa gaaaaaacac tccaaattat tgaagaaaat ccctatcaac tggtcgaaga
     5341 tgtccaaggc cttggcttta ccattgccga taggattgcg gaaaacctgg gaattgccag
     5401 tgattcaccc caacgttttc gggcaggcat gctatttagc ctcatccatc gctccatgga
     5461 aacaggcgat acctatgtgg aggccagaga cttgctggaa gcaacccttg aactgctgga
     5521 aaaatcccgc catacagagc tggatcctgc cgcagttgcc cacgagttga caggactgat
     5581 tgcagacgac aaggtacagc aagaaggcac caagattttc gacaacagcc tctactttgc
     5641 cgaacatggt atccataaaa acctgacccg cctgatggga aaaaatggtt tcaacccctt
     5701 cccacgcgca gacgttgaga ctgccatagc agagctggaa actatgtctt ccctgaccta
     5761 cgatgacatt caaaaagaag ccatcgtcca agctattacc aatccgcttt tcattctgac
     5821 aggcggacca gggactggaa aaacaacggt tatcaacggt attatcgccg tctatgccat
     5881 cttgcataag attgacctaa ctcgcaaccg agaagaatgc ccagtcctcc tagccgctcc
     5941 aactggacga gcagccagac ggatgaatga attgacaggt ctgccttctg ccaccatcca
     6001 ccgccatctg gggcttgttg aaggacagga agaatcctac cgtgatgatt atttggatgc
     6061 cgactttatc atcgtggatg agttttctat ggtagatact tggttggcca atcaactctt
     6121 ccaaaacatc tcctcccaga cccaggttct gattgtcggc gatgcggagc aattaccttc
     6181 tgtcagtccc ggtcaggttc ttgctgacct cctgaaaatt gacaagctac ccagcatcac
     6241 tctagaacgc atctatcgtc aatccgatga ttcgaccatt gttaccctag ccagccagat
     6301 tcgccaaggg gctctgccga gcgatttccg tgagaaaaag gctgaccgct cctattttga
     6361 agcccagaat gaacaaattc cagctctgat tgagcgtatt gtcggcgcag ccatcaagtc
     6421 gggcattcct gcaaacgaag tacaaatcct cgctcccatg taccgtggtg ctgcaggtat
     6481 tgaccaactc aacaccatga cccaggccct gctcaatcca ctggaagaag gagagttaga
     6541 attcctccat aacgagcaag ccttccgcca aggcgaccgg gtcattcatc tagtcaacga
     6601 cgccgaagcc aatgtcttca atggcgactt gggctatatt accgacctcc tgcctgccaa
     6661 gtacaccgac tccaagcagg acgagattac catcaacttc gacggtagcg aggtcaccta
     6721 tccccgtaac gaatggtaca agattacctt ggcctatgcc atgtccatcc acaagtccca
     6781 gggcagtgag ttccaagtcg tcatccttcc catcacgcgc accagccacc gcatgctcca
     6841 gcgcaatctg gtctacaccg ctatcacccg ctccaagagc aagctcatcc tcctaggcga
     6901 aatctccgcc ttcgactacg ccgtcaaaaa cgccggcacc gtccgcaaaa cctatctggt
     6961 cccacgtttc caaggggaaa tggcagagca ggatagcaag gatgctttat ctgaaaaagc
     7021 cgaaagcaaa acagctacaa ccacacaaac ccagccccct acacagccag acagaaaaga
     7081 actggttaaa gtagtcaatg aaaacaacca acaactctcc cttcttgatc aagaccagcc
     7141 agaaaaaaca agtccccaac ccacagaata cattttgact gtagacaacc tgctaactat
     7201 cgaccccatg attggcatag aacaggcaga tattgaagag tttttcagga aaagataaca
     7261 aaaatatttc ttttgttaca aaaatgttac aaatattaca attttgtgtt gacgaacttg
     7321 tttttatttg ttatactctg tttataagcg gaggtaagaa caaatgaaaa agatattcaa
     7381 ctactcagta ttgttgctct ctgtaacctg tctattgaca gcttgttcag caaaaaaaca
     7441 aaaaagccag acagaagcaa ccaccagtaa aacgacccaa gcaagtacca agcagactag
     7501 ttcctccaag cctgctagtt cccaagaaac tacaactgaa gccaattcat cagcagaggc
     7561 tagtcaacaa aaccaggaaa ctcagaactc tcaagtcgaa gaaagtgtcc taagcaccga
     7621 aacgactcac actcagctcc taaccctacc agctaccact attcccgaca gtctagttgg
     7681 aaaatggcaa ggaagtagcc aacaagcgcg taatattgag gtaactatca gcgcagacgg
     7741 tacctttact acttatgaag attttcgact tagtgaaaac gaggaaggag aacacctcat
     7801 ccatacctac acagctcgag ttacagacct agttgaatat gctccaaacc actacctaat
     7861 ccgcggggca gagggggaat attcggctct tctccctgga atgactggat taggaggaag
     7921 aattgcacca ggatttatcc tagaaggtgg acaatacaag gtcgttatgt ggggaaatcc
     7981 tgctgatcct gctgtcgaag ctaaatacaa cctagtatca gaacctaatg tttttgtaac
     8041 cttggataag gtagaataac aaattgtatc tagcatttat taaaaagcaa atagcaactc
     8101 gtgctatttg cttttttgta tttatcgcac aaagagactt tctaaa
//
LOCUS       DASGAC010000093         8123 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.093, whole genome shotgun sequence.
ACCESSION   DASGAC010000093 DASGAC010000000
VERSION     DASGAC010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8123)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8123)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8123
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.093"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            10..>8123
                     /locus_tag="U1335_001483"
     CDS             10..>8123
                     /locus_tag="U1335_001483"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012956.1,HMM:NF037639.1,HMM:NF037690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEM5231950.1"
                     /translation="MKKVRYFLSSFLLLVLCLDIIRLPITIFSESVSATTPLTIRTKY
                     LEHLKEDGQKLAIKLDTSQKQLDRLDVIVQIEEGVDISKGLSLVLQNELELESQLDEQ
                     GFPKEKLPLGFVKDEDYREEYVPKEFPEQEVAPTVATQDSLEDPLPVYGLGYYSIKIK
                     PEPERHIEWKVDEEQPERRYEEILLRLKIKSPLQTGQFMAVLSSDYKTILTEDWKTFE
                     DLVNRNSIEMVTDSAAFDTSQPVSEKSVSDTEQPIPETSESISDNTQSNPVPEGEEVL
                     QEEQALAIQTANLRLVLHEYEEGVLQPSKPIAGAEFSMIAVGNFESVHKGRTDEQGVL
                     EWRDLPVGEYQISQLSTAQGYEVEKQLPVIQLQESGAEKIIHVTNTKKNELEGQVGSM
                     LRSARTRRAVTETNTNSTTTIINNPNGTTTTVTREEEITKYIFDTIRIEIPGVTRHFR
                     QGGDLRKKEIQVTSTGEKKIIWEYITTVTGASDRYIKQIANTFMVPVDSGLGAPKITS
                     IIDNQGQTIENPETSQYSDSGRFDSVTNQLPIQDGTYVYTIETPILLPSENYTLDYYS
                     DVKVQAPIRSRLTQNGQTIVLTREEERNIKSAGSLTLPSDQTTSPYDTPKLSDTIRVN
                     GRYRESENKVIEWYTSRLNTTDSVQTYTFDVAEDKNTQAVHSKIVYVYEPTEGGNYRL
                     KSREQVDKAQSQITVSDVPVGGIAVVETITNVTNEKANHTITGASLEALKGDITIQKK
                     WATGTEKTAVTYTINGGSYNNHKVTLQANQSQVTVPNVEKFSGTGSTATKTRIYYEVT
                     EDVPVGYALSTAQMDWKNLQYVFTNKKDTSQPITPTPPGSCESYGVTSVEPVNINWLT
                     WQRGSNRWGGFHGSLKFYFKLPAFAKEGDSFTIELPRELKLEHLANPSVEWTPVYKSG
                     TNVILARTYHVEDRKLKFVLTSAAYSVSEYSGWFEIGSDQSANLVQINNDTNVAGKKY
                     LTGVRPEVPVWYSFDPENPINTQSNIVNKKLKYQTSYKGGHFDCSHTVTGNGTLNATE
                     NGSGGLQGSLHQFSSVHKQVINQTADSVTWELVYNGGRNDISGSILANKRKFWDRLHV
                     DTPLYDGNTHTSILKDLEIFVSDGTPADSYVESDMAQLKYKTTSNSGANTTYHYGIDG
                     TNMGLAVLLKREDWGDANFGFQSNYALEFYYEGSDWGRKAIIVRIKQRKNGNGILRNA
                     VNVMWNSLVISGKMGTDNYFVAGDTVASGGAYPTDWYAFRLKKVDQQKRPLEGAVFTL
                     YDSKQRPYQTIRSNEQGILEFTNILGGEYTFKEVEAPAGYTLDTTVHRLIIRNSDNIT
                     IDGQSYTAQAPFEIINKKDAKLSLKLKKKDQANTPLKGAVFRLRKTDGGQPYDETLGD
                     TFASDEFLFNELTVGNYTLEEVRAPTGYRGMGQINLTVYEENGTLKLRKQADTANSQT
                     STPQLNNGVVTLDIYNQPLELTFTKQNTQGEPLENAIFELRQIHSTGFTVVRTNLFSK
                     ANGQFVLKGLLPNTTYELWETRAPDGYAKPTQAVVQFTVNEDGTARFTRGSSTIVNSP
                     PKFKVKIVKIDAETGQPITEGVNDTAPRFTVTNATGETLNGQIANLQNGMYTFTNGSG
                     TNSGFEAGTYYLKEIRAPQGYTQLTNLIPFTIHSDGRVTVSEEFADGIATSATSPDTV
                     QIKVKNDRLKTLRISKRIKGLENLPSLITGQMTFTLTKDDDATAVSAVQTHAANTDFV
                     FTNLTYGSYTLVETAPPAGYMVEPIVYKVAVSRAGVSLYRTSDQVTPSRVEGASLITS
                     PDLSNIQSGPESNAIDGNETTSVTYHNFNGQGDNIPAGAYLGVDLQGVKRVRNIFYLQ
                     GNQNNITDRMNRYTVEYSIDGETYYPIASSATAERFEQSTDLLARYIRVRNEEQVVKK
                     WYAVRELRISAQEAESVSLQGGQAFPIGNIQHPEIQIEKQDMNNRIIQQAVTFRLYKV
                     PDDATSQTVTGALTDQNLVQTFTLTNGQVRQTLEAKVHGRYALVEGAPPTGYRGLASP
                     ILLDLQTLQQPHSGSQMKTTRFSLVGTNDKVRIDTNTANVLKFIVKNEPLTYHLKILK
                     RDVNNAATGLDARFELYDATGTTVIERGNTSQDGFSLTFPNLSPNSYVLKEIVAPANY
                     NPIAPIHLTIDQTGQLTIQSGPSDLIAIQSVDDSHLIQLTIKNRPFTPISIQKVDKRS
                     NETTLTGVRLRIQAKNGNQMPQFSDRNWHVTNYQGRVIDTEKALEWTSSNAGNAVFQL
                     PQGTYTISELSAPAGYEQLQPFDITVAEDGSVQLAQGINPEQVSQGQKDGRVNIKLTN
                     VFKPKIKITKVDSRDANRKLAGARFKLFGPDENTQIGQEVTTDTNGEITLPGLEPGTY
                     YLQESQPPTGYQANARKYQIIIDANGSARVGNTDNKIEVGTSQDQGADKIIPITVKND
                     RTPFTVKIRKRDYNDVNRGLNARFQLYRKNGNQEELLSGLVGDTIVNNHELVLPNILP
                     GTYILKEIRVPAGNYEAIQPIQFTITEEGRLQIDVNDRGFASVETSGNTQELILLIKN
                     IKKFRLRIKKQDATNEQTLLDGANFTLYRARDHNGGKLEAIASKVTANGLADIDVGPG
                     YFILQETQAPTGYVLNDKEYIFQINHDGTVLLRNGDNMTSLQGADSDRVVVFTMKNRR
                     KTGQFKLAKRAYSDSDRRLAAVFELKEENGAAPVATKTTATDGEEIVFENL"
BASE COUNT         2658 a         1644 c         1829 g         1992 t
ORIGIN      
        1 agtaaagtta tgaaaaaggt aagatacttt cttagttctt tcttattact tgttctatgt
       61 ctagatatta ttcggctacc gataacaatt ttttcggaat cagttagtgc tacaacgcca
      121 ctaaccattc ggactaagta tctagaacat ctgaaggaag atggtcaaaa gctggccatt
      181 aagctagata ccagtcaaaa gcagctcgat aggctagatg tgattgtcca gattgaagag
      241 ggagtagaca tcagcaaggg gctttccttg gtgctccaga atgagctgga actggaaagt
      301 cagctggatg agcaagggtt tccaaaggaa aaacttccac taggttttgt caaggacgaa
      361 gattatcgtg aagaatatgt gcccaaggaa tttcctgagc aggaagttgc cccaactgtt
      421 gcaacacagg attctctaga agatcccttg cctgtatatg gtctaggcta ttactccatc
      481 aaaatcaagc cagagcctga acgccatata gagtggaagg tagatgaaga gcagcctgag
      541 cggagatacg aggaaattct gctacgcttg aagataaaga gtccgctaca aactggtcaa
      601 tttatggctg ttctgtcttc agattataag accatcttaa cagaagactg gaaaacattt
      661 gaagacttgg tcaataggaa tagtatagag atggtgactg attccgcagc ctttgatacc
      721 tcacaaccag tctcagaaaa atcagtttct gataccgagc agccaattcc agaaacttct
      781 gaatctattt ctgacaacac gcagtctaat ccagtacctg aaggcgaaga ggtgctacaa
      841 gaagaacaag ctttagccat tcaaacagct aatctacgct tggtattaca tgaatacgaa
      901 gaaggtgttt tgcaacctag caagcccatc gcaggtgcgg agttttctat gatagctgta
      961 ggaaattttg aaagcgttca caaaggtcgt acagatgaac aaggagtctt ggaatggcga
     1021 gatttgcccg taggtgagta ccagatcagt caattgtcaa cagctcaagg ttacgaagta
     1081 gagaaacagt tgccagtcat tcagttgcaa gaaagtggag ccgaaaaaat aatccatgtc
     1141 accaatacta aaaagaatga gttagaagga caggttggta gtatgttgcg ctctgctcgg
     1201 actaggagag ctgtaacaga aacgaatacg aatagtacaa caacgattat caataatccg
     1261 aatggaacaa ccactactgt tacacgagaa gaagagatta caaaatacat ttttgatacg
     1321 attcggattg agattccggg ggtaacacgt cattttagac agggaggaga tttacgcaag
     1381 aaagaaattc aggttacctc aactggtgaa aagaagatta tttgggaata tattacaacc
     1441 gttactggag caagtgatag atatatcaaa caaattgcaa atacttttat ggtaccagtt
     1501 gactcaggac ttggagcacc taagattaca tctattatcg acaaccaagg acaaacgatt
     1561 gaaaatcctg agacgagcca gtatagtgat tctggtagat ttgattctgt tacaaatcag
     1621 ttgccgattc aagatggcac atatgtgtac accattgaaa caccgattct tcttccaagt
     1681 gagaactaca cactggatta ttattcggat gttaaggtgc aagcgccgat acgttcccgt
     1741 ttgacacaaa atggacaaac gattgtatta actagggagg aggagcggaa tattaaaagt
     1801 gcaggtagtt tgaccttgcc aagtgatcaa accacctcac cttatgatac acccaaatta
     1861 tcagatacta ttcgagtgaa tggtcgctat cgcgagtctg aaaataaggt gattgagtgg
     1921 tatacctctc gtctcaatac gacagatagt gtacaaacgt atacatttga cgttgctgaa
     1981 gataagaata cacaagcggt tcattcaaag attgtctatg tctatgaacc tactgaggga
     2041 gggaattata ggctaaagag tagagaacaa gttgataaag cgcaaagtca aatcaccgta
     2101 agtgatgttc cagtaggagg cattgctgtt gtcgaaacaa tcaccaacgt gacaaatgaa
     2161 aaagccaatc atacgattac gggtgcatcg ctagaagctc taaaaggtga tattacaata
     2221 cagaaaaaat gggcaactgg tacggagaag actgctgtta cctatactat taacggagga
     2281 agttataata accataaagt aaccttgcaa gcaaatcagt cacaggtaac agttccaaat
     2341 gtcgaaaagt tttctggaac aggcagtact gccacaaaaa cacgaatata ctatgaagtg
     2401 accgaagatg ttccagttgg ctatgcgctt tctactgcac agatggattg gaaaaacttg
     2461 cagtatgtct ttacgaataa aaaggatact agccaaccta tcacacctac gccaccaggt
     2521 tcttgcgaat catacggtgt cacaagtgtt gaaccagtca atattaactg gttgacttgg
     2581 caacgaggta gtaatagatg gggaggattc cacgggtcgt taaaattcta cttcaaatta
     2641 ccagcttttg ctaaagaagg ggatagcttt acaattgaat tgccaaggga attaaaactc
     2701 gaacacttag caaatccatc tgtcgaatgg acacctgttt ataaatcagg tacaaatgta
     2761 atccttgctc ggacctacca tgtagaagat agaaaattaa aatttgttct gacatctgct
     2821 gcttactcag tgagtgagta cagtgggtgg tttgaaattg gtagtgatca gagtgcaaac
     2881 ctagttcaga taaataacga tacgaatgta gctggaaaaa aatatctgac tggtgtgcgt
     2941 ccagaagtac ctgtctggta ttcttttgac cctgaaaatc caatcaatac acagtctaac
     3001 attgtaaata aaaagttgaa gtatcagact agctacaaag gtggacattt tgactgtagc
     3061 cacactgtga ctggtaacgg gacactcaat gcgactgaga atggtagcgg tggtctacaa
     3121 ggaagtttgc atcaattttc ttccgtccac aaacaagtca tcaatcagac agctgattct
     3181 gtgacctggg agttggttta taacggaggt aggaacgata tttccggcag tattttagca
     3241 aacaaacgga agttttggga tcggctacat gtggataccc ccctgtacga tggcaatacc
     3301 catacaagca ttcttaaaga tttagaaatt tttgtatcag atgggactcc tgcagattct
     3361 tatgttgagt cagatatggc acaacttaaa tataaaacaa cctcaaatag tggtgcgaat
     3421 acaacatatc attatggaat tgatggtacc aatatgggac tggctgtcct attgaaacgt
     3481 gaggattggg gagatgctaa ttttggtttt cagtcaaact atgcacttga gttttactat
     3541 gaaggaagtg attggggaag gaaggcaatc atcgttcgta taaaacaacg aaaaaatgga
     3601 aatggtatac tgagaaatgc agtcaatgta atgtggaata gcctagtaat cagtggaaaa
     3661 atgggcacag ataactattt tgttgctgga gacacggttg ccagtggtgg tgcctatccg
     3721 acagattggt atgctttccg gcttaagaaa gtggatcagc aaaaacgtcc attagaaggc
     3781 gcggtcttta ctctctacga ctcgaaacag cgcccttatc aaaccattcg ttcaaatgaa
     3841 caaggtattc ttgaatttac aaatatctta ggaggagagt acactttcaa ggaagttgaa
     3901 gcaccagcgg gttatacgct agatacgaca gtccatagat tgattattag aaattcagac
     3961 aatataacga ttgatggaca atcctatact gcacaagcac cgtttgaaat tataaacaag
     4021 aaggatgcga aactcagcct caaactcaag aaaaaagatc aggcaaatac tcccttgaaa
     4081 ggtgctgtat tccgcctgag aaaaacagat ggtggtcagc catatgatga gacgctcgga
     4141 gatacatttg catcagacga gttcctcttt aatgagttga cagtagggaa ctacacgctg
     4201 gaggaagtaa gagcacccac aggctatcgt ggaatggggc agatcaactt aacggtttat
     4261 gaagaaaatg gaacgcttaa actgcgtaaa caggcagaca cggctaacag ccagaccagt
     4321 actcctcaac tgaacaatgg tgtggtgact ctggatatct ataatcaacc gcttgaacta
     4381 acgtttacga agcaaaatac tcagggagaa ccattggaaa atgcaatctt tgaattgcgt
     4441 cagatacact caactggctt tacagttgta cgaacaaacc tcttctctaa agccaatgga
     4501 caatttgtcc tgaaaggtct cttgccaaat accacctatg aactgtggga aactcgtgca
     4561 ccagatggct atgcaaaacc aactcaggca gtggttcagt ttactgtaaa cgaagatggt
     4621 acagcccgct ttactcgtgg cagttcgact attgttaact ctccaccgaa atttaaggtt
     4681 aagattgtaa aaatcgatgc ggagacagga caaccgatta cggaaggcgt caacgatacc
     4741 gccccacgtt tcacggtgac aaatgctaca ggagaaacac ttaatggtca aattgccaat
     4801 ctgcaaaatg gtatgtatac attcacaaat ggaagcggta ccaattctgg atttgaagca
     4861 ggaacctact atcttaaaga aatccgagca ccgcaagggt atacacaact gacaaactta
     4921 ataccattta caatccactc agatggacgt gtaacagtga gtgaagagtt tgcggacggg
     4981 atagccacca gtgcaacatc tccagataca gtacaaatca aagtcaaaaa cgaccgatta
     5041 aaaaccttgc gtatttccaa acgtatcaag ggattggaaa acttgccgag tcttatcaca
     5101 ggacagatga cctttacatt gaccaaggac gatgatgcaa ccgcagtatc agctgttcag
     5161 acacatgctg cgaatacaga cttcgtcttt actaacctga cctacggttc ttacaccctt
     5221 gttgaaacag cgccaccagc gggttacatg gtggaaccga ttgtttataa agttgcggtc
     5281 agtcgagcag gagtatccct ttatcgaaca agtgaccaag tgacaccaag tcgagtcgaa
     5341 ggggcgagcc taatcacatc tcctgatttg agtaatattc agagtggtcc tgagagcaat
     5401 gccattgatg gaaatgaaac aacttctgtg acctatcata atttcaatgg tcaaggagat
     5461 aatattcctg ctggagccta tctaggggtt gatctacaag gcgtgaaacg tgttcgaaat
     5521 attttctact tacaaggaaa tcagaataat ataacggata ggatgaatcg ctacacagta
     5581 gaatactcaa tagatggtga gacctactac ccaatcgctt catcagcaac ggctgagcgc
     5641 tttgaacagt ctaccgacct tctcgctcgg tatatccgtg tgagaaatga agagcaagtc
     5701 gtcaaaaaat ggtatgcggt tcgtgagcta cgtatctcag cccaagaagc ggagtccgta
     5761 agtcttcaag gtgggcaggc attcccaatc ggaaatatcc aacatcctga gattcaaatc
     5821 gagaagcagg atatgaataa ccgtattatt caacaagctg tgacatttag gctctataaa
     5881 gttccagatg atgcaacgtc acaaacggtg acaggcgctc tgacagatca aaatcttgtc
     5941 caaaccttta ccttgacaaa tgggcaagtt cgtcagacct tagaagccaa ggtgcacggt
     6001 cgttatgccc ttgtcgaagg cgcaccgcca actggttatc gtggtttagc tagtccaatc
     6061 ttactagact tgcagacact acagcaaccc catagcggaa gtcagatgaa gacaacacga
     6121 ttcagcctcg ttggaacaaa tgataaggtg aggattgata ccaacacagc caatgtgctg
     6181 aagttcatcg taaaaaatga acctctgacc tatcatctca agatactcaa acgcgatgtc
     6241 aataatgcgg cgacaggtct cgatgcacgc ttcgagttgt atgatgcaac gggtacgact
     6301 gttatcgaac gtggaaatac cagtcaggac ggatttagtt tgacgttccc aaacctgagt
     6361 ccgaatagct atgtcctgaa agagatagtg gctcctgcca attacaatcc aatagcgccg
     6421 attcatttga ccattgacca aacagggcag ctaactatcc agtcaggacc aagtgactta
     6481 atcgctattc aatcagtaga tgatagtcat cttatccaac taaccatcaa gaatagaccg
     6541 tttacgccaa tcagtattca gaaggtggac aaacgtagca acgagacaac cttgacaggt
     6601 gtgcggttgc ggattcaggc taagaatggc aatcagatgc cacaatttag tgatcgaaac
     6661 tggcatgtga cgaactatca aggtcgtgtg attgacactg aaaaggccct tgagtggacg
     6721 agctccaatg caggcaatgc tgtcttccag ctaccacaag gaacctatac catcagcgaa
     6781 ctctctgcac cagcaggtta cgagcagcta cagcctttcg atatcactgt ggcagaagat
     6841 ggtagtgtcc agcttgctca gggaataaat cctgaacagg ttagtcaagg gcaaaaagac
     6901 ggacgggtca atatcaaact caccaacgtc ttcaagccta agataaagat taccaaagtc
     6961 gacagccgcg acgccaaccg caagcttgca ggtgcacgct tcaagttatt tggaccggat
     7021 gaaaatacgc agataggtca ggaagtgacg acagacacca acggtgaaat cacgcttcca
     7081 ggcttggaac caggtaccta ctatctacaa gaaagtcagc caccgacagg ttatcaggct
     7141 aatgctcgca aataccaaat cataattgac gccaatggtt cggctcgggt tggtaatact
     7201 gataataaga ttgaggttgg aactagccaa gatcagggtg cggataagat tatcccaatc
     7261 accgtaaaaa atgaccgaac accatttaca gtgaaaatcc gtaagcggga ttacaatgat
     7321 gtcaatagag gtttaaacgc tcgtttccaa ctctatcgaa aaaatggcaa tcaagaagaa
     7381 ctactttctg gattagttgg agataccata gtgaataatc atgagttagt ccttccaaat
     7441 atcttgcctg gaacctatat cttgaaagag ataagggtgc cagctggaaa ttatgaagcg
     7501 attcaaccga ttcaattcac catcacggaa gaaggtcgcc tgcagattga tgtcaatgac
     7561 cgtgggtttg cttcggtaga aacaagtggc aatactcaag agctgatctt gctgattaaa
     7621 aatatcaaga agtttcgcct gcggattaaa aaacaagatg cgaccaatga gcaaacctta
     7681 ctagatggtg cgaactttac cctttacagg gcacgcgatc ataatggagg taagctagaa
     7741 gcgattgcaa gtaaagtcac tgccaatgga ctagccgaca ttgatgttgg cccaggctac
     7801 tttatcctac aagaaaccca agcaccaacg ggctatgtcc taaatgataa ggaatacatt
     7861 ttccaaatca atcacgacgg aactgtttta ctccgtaacg gtgataatat gacctcgctc
     7921 caaggggcag acagcgatcg tgtggttgtc tttaccatga agaacagaag aaaaacagga
     7981 cagtttaagc tagccaaacg tgcttatagc gatagcgatc gtcgtctcgc tgcggtgttt
     8041 gaattgaaag aagagaatgg tgcggctcct gttgctacca agacgacagc gaccgatgga
     8101 gaagaaattg tctttgagaa cct
//
LOCUS       DASGAC010000094         8099 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.094, whole genome shotgun sequence.
ACCESSION   DASGAC010000094 DASGAC010000000
VERSION     DASGAC010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8099)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8099)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8099
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.094"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            273..1232
                     /locus_tag="U1335_001484"
     CDS             273..1232
                     /locus_tag="U1335_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5231951.1"
                     /translation="MGFKKIILSSVALLSAVTLAACSSNSSDSSSVNVGIIQYAEHEA
                     LTSAREGFVEALEEAGYKEGENLTIDLQNAQGDQANLQTMVEKLAGKNDLNFAIATPA
                     AQAMLNADSETSSVFTAVTDPVEAGLVESLEKPGGTMTGSTDATDVEGQIEMLLKVVP
                     TAKTVGIFYNSSEVNSEVQAEQAKKALEAKGVKVEVTTVTTTNDVQQAITSLAGKVDA
                     IYLPTDNTVASTASTIGDILKEAKVPAMGSDAAVIDAALFTYGVDYHAIGVQAGELAV
                     KILKGEKPADLAVEKPNTAAITVNEEMAKAVGIDAATIKALEE"
     gene            1256..2230
                     /locus_tag="U1335_001485"
     CDS             1256..2230
                     /locus_tag="U1335_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5231952.1"
                     /translation="MYYKLVKKLATISVASMGLLTLAACSSSSEQASSDVVKVGVLQY
                     MEHESLTAAREGFVAELEANGYKEGEKLVLDYQNAQGDQANLQTISEKLIDGNDIVLA
                     IATPSAQSLATVSTETPIVFTAVTDPLSADLVESIEKPGGLLTGTSDQAPIDKQVELL
                     GQAVPDAKKVGILYTTSERNSEVQVEQAKELLEKAGYKVVVKGITSSNEVQDATTSLM
                     KDVDALFIPTDNTVASTMTMIGELSVEHKVPVIGGSTDMVDEGGLLTYGTNYVALGRQ
                     TAKMAIKIIEGANVSETAVEYPETVSLHVNEEMAQKLGIDTSKLAVSE"
     gene            2285..3178
                     /locus_tag="U1335_001486"
     CDS             2285..3178
                     /locus_tag="U1335_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5231953.1"
                     /translation="MDIILSSISQGLLWSVMAIGVYLTFRILDIADMTAEGSYPLGAA
                     VCATGIVNGVPPLLATFMAMVAGMGAGLISGLLHTKLKIPALLTGIVTLTGLYSINLK
                     ILGKANVALLKQETLVTQLQDFGLTKTNAVLVIGLVFVLAVVSLLTLLLNTQIGLAIR
                     STGDNIPMSEANGINVDNMKIYGYMLSNGLIALCGALLTQNNGYADLNSGTGTIVIGL
                     ASVIIAEVILRNLRLGWRLLSVVLGAVVYRLIILAILEIPGMDADLVKLFSAILLATV
                     LYVPELQKKLNIRRPKLNGNA"
     gene            3188..3988
                     /locus_tag="U1335_001487"
     CDS             3188..3988
                     /locus_tag="U1335_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5231954.1"
                     /translation="MSTILSIQNIHKTFEAGTVNENHVLRGLNLDVKEGDFISIIGGN
                     GAGKSTFMNSLAGALTVDSGDILLEGKSIKHVSAAKRSKDISRVFQDPKMGTASRLTI
                     EENMAIAYRRGLSRGLGWGVKDSERAIFKEALKELGLGLENRMKVDTQFLSGGQRQAL
                     TLMMASLVKPKVLLLDEHTAALDPKTSDMVMELTKKIVESHQLTALMITHNMENAIEY
                     GNRLVMLHRGQIVVDVEGEEKKNLTVQNLMDLFYKNSGEKLTDDEMIL"
     gene            complement(4033..5100)
                     /locus_tag="U1335_001488"
     CDS             complement(4033..5100)
                     /locus_tag="U1335_001488"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002308136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEM5231955.1"
                     /translation="MKLTVNLPNTPYDILIQRGSLAQTGTWVKELWKPQKIAIITDDH
                     VGSLYRETVQSSLEQAGFETIVFEFPEGEASKNLDTVNQAYEFLVKSGMTRSDGIIAL
                     GGGVVGDLAGFVASTYMRGIHFLQIPTSLTAQVDSSIGGKTGVNTPFAKNMVGTFCQP
                     DGVLIDPDTLKTLDKRELIEGMGEVVKYGLIDDVKLWETLDQLDGAVDSILEHADYII
                     YHSCEVKRKVVVEDELDNGVRLYLNFGHTIGHAIEATAGYGQVMHGEAVAIGMVQISR
                     AAEKKGLMPAGITEKIIAMCEKFGLPTTHQPWNVDELYAALTHDKKARGKTIKLVIVP
                     QLGQAAIHQIPMEEMLEFLQP"
     gene            complement(5113..5982)
                     /locus_tag="U1335_001489"
     CDS             complement(5113..5982)
                     /locus_tag="U1335_001489"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEM5231956.1"
                     /translation="MNIDGYTRLAAVVAKPIKHSISPFIHNLAFKETGVNGVYVAWEI
                     PEEDLAVTLENIKRYDMFGINLSMPYKQAVIPYLDSLTDSARLIGAVNTVIHQDGLLI
                     GHNTDGIGFFKSLEKLRGFQVRNKRLTILGGGGASTAIIAQATLDGAKEITIFCRQQS
                     LERTQTSLTPIAQATGVPMQVLTLDDSQLLQEHITNSDLLVNGTSVGMDGYSQPVPST
                     LRFPENLLVADVIYQPFETPLMKHAQSQGNPTINGLGMLLFQAAEAFQAWTGKEMPTD
                     LIWDQLVQKYDIK"
     gene            complement(6028..7053)
                     /locus_tag="U1335_001490"
     CDS             complement(6028..7053)
                     /locus_tag="U1335_001490"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018364383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HEM5231957.1"
                     /translation="MGIHKRSTSLDIDKVKELSKLEGEFLAAKNQRDEELKRIIRGED
                     DRLLLVIGPCSSDNEEAVIEYARRLSKLQEEVKDKIFMVMRVYTAKPRTNGEGYKGLV
                     HQPDTSKLPDLINGIAAVRNLHYRVITETGLTTADEMLYSANYPLVEDLVSYHAIGAR
                     SVEDQEHRFVASGIDMPTGMKNPTSGNLTVMFNGIYAAQNKQNFIYRDAEVDTDGNPL
                     AHAILRGANTEKGGYEPNYYYDILLKTIKQYERFGLKNPFIVIDTNHDNSGKNYLEQI
                     RIVRQTLINRDWNESIRKYVRGFMIESYLEDGRQDSPEVFGKSITDPCLGWEKTEALI
                     REIHQTV"
     gene            complement(7063..8082)
                     /locus_tag="U1335_001491"
     CDS             complement(7063..8082)
                     /locus_tag="U1335_001491"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017770459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HEM5231958.1"
                     /translation="MFTPISEKIDINQVREHSKLSPETLAKKQARDRELEAILKGEDD
                     RLLLVIGPCSSDNEEAVLDYAHRLAKLQEEVKDKIFMVMRVYTAKPRTNGDGYKGLMH
                     QPDTDAAPSLINGIKAVRNLHYRVITETGLTTADEMLYPENLPLVDDLVSYIAIGARS
                     VENQQHRFVASGIDVPTGLKNPTSGNLKVMFNGLFAAQKKQSFLFNNTEVETSGNPLA
                     HVILRGAVNENGKYLPNYYYDNLLETIDLYDQFGLKNPFIIIDTNHDNSGKNYLEQIR
                     IVRQTLINRDWNESIRNYVRGFMIESYIEDGRQDNPDVYGKSITDPCLGWEKTQELIR
                     EIYNR"
BASE COUNT         2280 a         1552 c         1864 g         2403 t
ORIGIN      
        1 aatgtgtcaa aatcattcag ctaatcatac ttatttctac ggctatttta gatagtgttt
       61 gtagacatgg taaacatgga tgcaaacacg ggaacgtaaa gtttgtatct atgtggctgt
      121 agctattttg acatgtgccc atagatgata catctaaatg gcacggataa ttcattctgt
      181 tttcctatac agatgaaata taaggaccgt ttagagtgta gtctaagcgg tcctttcttg
      241 tttgctatta tatttataaa aggagaataa tcatgggatt taaaaaaatt atacttagtt
      301 cagtagcact tttgtcagca gtaacgcttg ctgcatgcag ttccaattcg tcagattcaa
      361 gttcagtcaa tgttggtatt attcaatatg ctgaacatga agcgttgacc tcagctcgtg
      421 aaggctttgt agaggcgctc gaagaagcag gctacaagga aggtgaaaat ctgacgattg
      481 atttgcaaaa tgcccaaggt gatcaagcaa acttacagac aatggttgag aaattggcag
      541 gaaaaaatga tcttaacttt gccatcgcaa caccggcagc ccaagccatg cttaatgcag
      601 atagtgaaac atcaagtgta ttcacagctg tcacagatcc agttgaagca ggtttggttg
      661 aatcattgga aaaaccaggt gggaccatga cgggatcgac tgatgcaact gatgtggaag
      721 gtcaaatcga gatgttgctc aaagttgtac caactgcgaa gactgtcggt attttctaca
      781 attctagcga ggtaaactca gaagtccaag ctgagcaggc taaaaaagca ctcgaagcaa
      841 aaggtgtaaa agtagaagtg acaacagtta cgacgacaaa cgatgttcag caagctatta
      901 cttcacttgc aggaaaagtc gatgctatct atcttccaac tgataataca gttgcctcta
      961 cagcttcaac aatcggtgat attttaaaag aagcaaaagt tccagctatg ggaagtgacg
     1021 cggcagttat tgacgcagct ctatttacct acggtgtcga ctaccatgct atcggtgttc
     1081 aagctggtga attggcagtg aagattttga agggtgaaaa gccagctgac ttagcagttg
     1141 aaaaaccaaa tacagcggct attaccgtca atgaagaaat ggctaaagct gttggtattg
     1201 atgcagcgac tataaaagca ttagaagagt aaaatattta ggagaagaaa cgtttatgta
     1261 ttataagcta gtaaaaaaat tggcaactat ttcagtagca agtatgggtt tgctaacact
     1321 tgcagcttgt tcctcatcat cagaacaagc ttcctcagat gtggtcaaag ttggagttct
     1381 ccaatatatg gagcatgaat cattgacagc tgcccgtgag ggttttgtgg cggaattaga
     1441 agcaaatggt tataaagagg gtgaaaaatt ggttttggat tatcaaaatg cccaaggcga
     1501 tcaagctaac cttcaaacca tttcagaaaa attaatcgat ggaaatgata ttgtcttggc
     1561 aatcgctacg ccgtctgccc agagtttagc gactgtgtct actgaaacgc cgattgtctt
     1621 tactgcggtt acagatccct tgtcagctga cttggtagaa tccattgaaa aaccaggtgg
     1681 acttttgaca ggtacatctg accaagctcc aattgacaaa caagttgaat tgctaggaca
     1741 agctgttcct gatgctaaga aagttggtat tttgtatact actagcgaac ggaactcaga
     1801 agtccaggta gagcaagcta aggaattgct agaaaaagca ggttataagg tagtagtaaa
     1861 aggaatcaca tcttcaaatg aagtccaaga tgcgacaact agcttgatga aggatgtaga
     1921 tgctctcttt attccaacag acaatactgt cgcttcaacc atgaccatga tcggtgaatt
     1981 atctgtggag cataaggttc cagtaatcgg tggttcaacg gatatggtgg atgaaggagg
     2041 gcttttgact tacggtacca actatgtagc tttaggtcgt caaactgcaa aaatggctat
     2101 taagattatc gaaggagcca atgtgtcaga aacagcagta gaatacccag agaccgtcag
     2161 tcttcacgtt aatgaagaaa tggctcagaa attaggtatc gatacttcta agcttgctgt
     2221 atcggaataa gattggtaag atagaaccta gtattgacta cgaatttaga aaaaggagaa
     2281 aatcgtggat attattttat caagtatctc gcaaggcttg ctttggtcag ttatggcgat
     2341 tggtgtttac ttgacgtttc gtattttaga tattgctgat atgacagctg aggggtctta
     2401 tccgcttgga gctgctgttt gtgcgacagg gattgtgaac ggagtgcccc ccttgctggc
     2461 aacctttatg gctatggtag ctggtatggg tgcaggattg atttctggtt tacttcatac
     2521 aaaactaaaa attccagccc ttttgaccgg tattgtaacc ttgacaggtc tctactctat
     2581 caacttgaaa atattaggca aagccaatgt ggctctgctt aagcaagaaa ctctagtgac
     2641 ccaattgcag gatttcggtt tgacaaaaac aaatgccgtt ttggtgattg gtctggtctt
     2701 tgtgctagca gttgtaagct tattgacgct cttgctcaat acacaaattg gtctagctat
     2761 tcgttcaaca ggggataata ttccaatgag tgaggccaat ggtatcaatg tagacaatat
     2821 gaaaatctac ggttatatgt tgtcgaatgg tctaattgcc ctttgtggtg ctcttcttac
     2881 tcagaataat ggctatgcag atctcaactc aggtactggt accattgtta tcggtctagc
     2941 atctgtcatt attgcagaag tgatcttgcg taacttacgc ttgggttgga gacttctatc
     3001 ggttgttctt ggtgcagttg tttaccgttt gattatctta gcgattttgg aaattccagg
     3061 tatggatgca gaccttgtta aactcttctc agctatcctt ctggcaaccg ttctctatgt
     3121 gccagaattg cagaagaaat tgaatattcg tcgtccaaaa ttgaatggaa atgcttagga
     3181 ggaagtcatg tctacaattt tatcaattca aaatattcat aaaaccttcg aagctggaac
     3241 agttaatgag aaccatgtcc ttcgtgggtt gaacttagat gtgaaagaag gggattttat
     3301 ctctatcatc ggtggtaatg gtgctggtaa atcaactttc atgaactcac ttgcaggtgc
     3361 cttgacggtt gattcgggcg atattttgct tgaaggtaaa tccattaagc atgtctcagc
     3421 tgccaaacgt tctaaggaca tcagccgtgt tttccaagac cctaagatgg gaacagcttc
     3481 ccgcttgacc attgaagaaa acatggctat tgcctatcgt cgtggattgt cacgtggtct
     3541 tggttggggt gtgaaggata gtgaacgtgc tatttttaag gaagccttga aagagcttgg
     3601 tctgggatta gaaaaccgta tgaaggtgga cacgcaattt ctttcaggtg gtcaacgtca
     3661 ggctctgacc ttgatgatgg cttcgctggt taaaccaaaa gttctgctcc tggacgaaca
     3721 cactgcggcc cttgatccaa aaaccagcga tatggttatg gaattgacca agaaaatcgt
     3781 ggaaagtcat caattgacag cccttatgat tacgcataat atggaaaacg ccattgaata
     3841 tggtaatcgt ttggtcatgt tgcaccgtgg tcagattgtt gtcgatgtag aaggagaaga
     3901 gaagaagaat ttgactgttc aaaacttgat ggaccttttc tacaaaaaca gcggtgaaaa
     3961 gctaactgac gatgagatga ttttataaaa aaataagact actgatttca tgcaagtcag
     4021 tagtcttttt tcttatggtt gtagaaattc tagcatttct tccattggaa tttgatggat
     4081 ggcagcctgt cccaattgag gaacgataac aagtttgatg gtcttgccac gtgctttttt
     4141 atcgtgagtt agggcggcgt ataattcatc tacattccaa ggctggtgtg tagtcggcaa
     4201 gccgaatttt tcacacatgg cgataatctt ttctgttata ccagctggca tcagtccttt
     4261 tttctcagct gcgcgtgaga tttgtaccat accaatggca acagcttcac cgtgcatgac
     4321 ttggccgtag ccagcggtcg cttcaatagc atgtccaatc gtgtgaccga agttgaggta
     4381 gagtctgaca ccgttgtcta attcatcttc gacaacaacc ttgcgtttga cttcgcagga
     4441 gtggtagatg atatagtcag cgtgttccaa aatgctatcg acagctccat ctagttggtc
     4501 tagggtttcc cagagcttca catcatctat taagccatat ttgacaacct cgcccattcc
     4561 ttcaatcaat tctcgtttgt cgagtgtttt cagggtatca ggatcaatga gaacgccgtc
     4621 aggctggcag aaggtcccca ccatattttt ggcaaatggg gtgttcacgc cagtttttcc
     4681 cccgatagaa gaatcgactt gggcagttag gctggttgga atttgtagga aatggatacc
     4741 acgcatatag gtagaagcga caaaacctgc caaatcgcca acgactcccc cgccgagagc
     4801 aatgattcca tcacttctag tcatgccgct tttcacaaga aattcataag cttggttgac
     4861 ggtatcaaga ttttttgagg cttcaccttc tggaaattca aagacaatgg tttcaaaacc
     4921 agcttgttct aagcttgact gaactgtttc gcggtagagt gagccaacgt ggtcatctgt
     4981 aataatggcg attttctgag gtttccaaag ttctttgacc catgtacctg tctgtgctaa
     5041 acttcctctt tggataagga tgtcgtaggg agtgttggga agattgacgg tcagtttcat
     5101 cagatttcct ctctatttga tgtcgtattt ctggactaat tggtcccaaa tcaagtcagt
     5161 cggcatttcc ttaccagtcc aggcttggaa tgcttcagcc gcttggaaaa ggagcatgcc
     5221 caaaccgtta atagtagggt tgccttgtga ctgggcatgc ttcattaaag gtgtttcgaa
     5281 tggttgataa atcacatccg caaccaaaag attttcggga aagcgaaggg tagaaggaac
     5341 aggttgagaa tacccatcca tgcctacact ggttccgttg actagtaagt cggagttggt
     5401 gatatgttcc tgtagtaatt ggctatcatc aagcgttagg acctgcatgg gaactccagt
     5461 tgcttgagca ataggtgtaa gactcgtctg tgttctttcc aagctttgtt gacggcagaa
     5521 aatggtaatt tcctttgcac catccaatgt agcctgagct atgatagcag tagaagcacc
     5581 accaccacct agaatggtca gtcgcttgtt gcgtacttgg aatcctctta gtttttctaa
     5641 acttttgaag aatccaatgc catcggtatt atgaccgatt agtaagccat cctgatgaat
     5701 gacggtattg acagcgccaa tcaagcgagc agagtcagtc aggctatcga gataagggat
     5761 gacagcctgc ttatagggca tggacaggtt gataccaaac atatcatatc gtttgatatt
     5821 ttcaagcgtt acagccaaat cttcctcggg aatttcccaa gcgacataga caccatttac
     5881 acctgtttct ttaaatgcca gattatgtat gaagggggaa atggagtgtt tgattggctt
     5941 tgcaacaacg gcagcaagac gagtgtaacc atcaatgttc atagcttacc tccaaattat
     6001 ttatcgtata aaaaattaag gaaagaatta gacggtttga tgaatttcac gaatcagagc
     6061 ttccgttttt tcccaaccta agcaagggtc ggtaatggat ttgccgaata cctcagggct
     6121 atcttgacgg ccgtcttcta agtaggattc aatcatgaaa ccacggacat atttgcgaat
     6181 ggattcattc caatcacggt tgatgagggt ttgacggacg atacggattt gttccaggta
     6241 gtttttacca gaattgtcgt ggttggtatc aattacgata aatggatttt taagaccaaa
     6301 tcgttcatac tgtttgatgg ttttcaagag aatatcatag tagtagtttg gctcataacc
     6361 gcccttttca gtattggcac cacgaaggat agcatgagct agagggttgc catctgtatc
     6421 aacttctgca tcacggtaaa taaagttctg tttgttttgt gcggcgtaga taccattgaa
     6481 cataacggtc aaattaccag aagttgggtt tttcatacct gtcggcatat caatacctga
     6541 agctacaaaa cggtgctctt gatcttcgac tgagcgggct ccgatagcgt ggtaggacac
     6601 caagtcttcc acaagagggt agttggcaga gtagagcatt tcatcagcag ttgtgagtcc
     6661 ggtctcagta atgacacggt aatgcaaatt acgaacggca gcgataccgt taatgaggtc
     6721 tggtaattta gaggtatctg gctgatgaac cagtccttta tagccttccc cattggtacg
     6781 tggcttagct gtgtaaaccc gcatgaccat gaagatttta tctttgactt cctcttgaag
     6841 cttagagaga cgacgtgcat attctataac agcctcttca ttatctgatg agcaaggacc
     6901 gataaccaag agcagacggt catcttcgcc tcggataatt cttttcagtt cttcatcgcg
     6961 ctgatttttt gcagctagaa attctccttc taacttggaa agttccttta ctttatcgat
     7021 gtctaaactg gtgctacgtt tgtgaattcc cataatatct tcctatctgt tgtaaatttc
     7081 tcggatgagt tcttgtgttt tttcccagcc taagcaaggg tctgtgatgg attttccata
     7141 gacatctgga ttgtcttggc gaccgtcttc aatgtaggat tcaatcatga atccgcgaac
     7201 gtagttacga atggattcgt tccagtcacg gttgattaag gtttgacgga cgatacggat
     7261 ttgttccaaa taatttttcc cagaattgtc atggttggta tcgatgatga tgaatggatt
     7321 tttcaaacca aactgatcat agaggtcaat ggtttctaga agattgtcat agtaatagtt
     7381 tggtaggtat ttaccatttt cattgactgc gccacgaaga ataacgtgag caagtgggtt
     7441 gccagatgtt tcaacttcag tattgttgaa gaggaaggat tgcttcttct gagcagcaaa
     7501 aagaccgttg aacatgactt tgaggttgcc agatgttgga tttttcaagc ctgttggaac
     7561 atcgatgcct gacgctacaa aacggtgctg ctgattttca actgaacgag ctccgatagc
     7621 gatgtaggaa accaagtcat caaccaaagg cagattttca gggtagagca tctcgtcagc
     7681 agtagttaaa ccagtttcgg taatgacgcg atagtgcaaa tttcgcacag ccttgatacc
     7741 gttgattaag cttggtgcag catctgtatc tggttggtgc atgagtcctt tataaccatc
     7801 accattggta cgtggcttgg cagtatagac gcgcatgacc atgaaaattt tatctttgac
     7861 ctcttcttgg agcttggcca agcggtgagc ataatctaag acagcctctt cattgtcaga
     7921 agaacatggt ccaattacta ggagaagacg atcatcttcc ccttttaaga tggcttcaag
     7981 ttcacggtca cgagcttgtt ttttagcaag tgtttctgga gataatttag aatgctcacg
     8041 aacttgattg atgtcgattt tttcactgat tggtgtaaac aataatcttt cctctttca
//
LOCUS       DASGAC010000095         8071 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.095, whole genome shotgun sequence.
ACCESSION   DASGAC010000095 DASGAC010000000
VERSION     DASGAC010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8071)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8071)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8071
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.095"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            48..749
                     /locus_tag="U1335_001492"
     CDS             48..749
                     /locus_tag="U1335_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HEM5231959.1"
                     /translation="MAIISKEILKEQIKDGIIVSCQALPGEPLYREEGGIMPLLVKAA
                     EEAGAIGIRANSVRDIKEIKEVTNLPIIGIIKRDYPPQEPFITATMKEVDELAELDIA
                     VIALDCTKRERFDGLDIVDFIKQIKEKYPHQLFMADISTYEEGVTAYEAGIDFVGTTL
                     SGYTSYSRQEDGPDIELVDRLCRAGIDVIAEGKIHYPDQVKTIHELGVAGIVVGGAIT
                     RPKEIAERFIQALKK"
     gene            805..2112
                     /locus_tag="U1335_001493"
     CDS             805..2112
                     /locus_tag="U1335_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM5231960.1"
                     /translation="MKKIIHSLLAGVAVLSLAACSGGNKTAEKTADSSASGKTEITWW
                     AFPVFTQENTEDGVGTYEQKIIAAFEEANPDITVKLETIDFTSGPEKITTAIEAGTAP
                     DVLFDAPGRIITYGKNGKLADLNDLFTDEFVKDVNNDNIIQASKAGDTAYMYPLSSAP
                     FYMAFNKAMLKDAGVLDLVKDGWTTDDFEKVIKALKDKGYNPGSLFSNGQGGDQGTRA
                     FLANLYSGSITDEGVTKYTTDSEQMIKALDKAAGWIKDGYMMNGSQYAGGDDIQNFAN
                     GQTSYTILWGPAQNGIQGQLLEASKVEVLEVPFPSEDGKAALEYLVNGFAIFNNGDEA
                     RVAASKKFIQFIADDKEWGPKNVVRTGAFPVRTSFGALYDDERMAMIDKWTGYYSPYY
                     NTIDGFAEMRTLWFPMLQAVSNGEKEAAAALKEFTEQANATIK"
     gene            2267..3154
                     /locus_tag="U1335_001494"
     CDS             2267..3154
                     /locus_tag="U1335_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003041053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM5231961.1"
                     /translation="MQINKIRMRETIVSYTFLAPILIFFTVFVLAPMIMGFVTSFFNY
                     TMTDFSFVGLDNYVRMFNDPIFIKSLINTLIIVVGSVPVVVFFSVFVASQTYEKNVIA
                     RSFYRAVFFLPVVTGSVAVTVVWKWIYDPLSGILNFVLKSGGLIEQNISWLGDKQWAL
                     LAIIIILLTTSVGQPIILYIAALGNIDNSLVEAARVDGANEHQVFWQIKWPSLLPTTL
                     YIAVITTINSFQCFALIQLLTSGGPNYSTSTLMYYLYEKAFKLSEYGYANTMGVFLAV
                     MIALISFAQFKILGNDVEY"
     gene            3168..3998
                     /locus_tag="U1335_001495"
     CDS             3168..3998
                     /locus_tag="U1335_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003036967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM5231962.1"
                     /translation="MKKKTITPFGVISTIILLLLTILFIFPFYWIMTGAFKSQPHTIV
                     IPPQWWPTQPTLENFTKLTVQNPALQWLWNSVFISLTTMILVCMTSSLAGYVLAKKRF
                     YGQRILFSIFIAAMALPKQVVLVPLVRIINFMGIHDTLAAVILPLVGWPFGVFLMKQF
                     SENIPTELLESAKIDGCGELSTFWNVAFPIVKPGFAALAIFTFINSWNDYFMQLVMLT
                     SRQNLTISLGVATMQAEMATNYGVIMAGAAMAAVPIVTVFLVFQKSFTQGITMGAVKG
                     "
     gene            4028..4483
                     /locus_tag="U1335_001496"
     CDS             4028..4483
                     /locus_tag="U1335_001496"
                     /inference="COORDINATES: protein motif:HMM:TIGR00022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HEM5231963.1"
                     /translation="MIYDHIDNCSQYKGLHPNLDLALAVLEKGDFRDQDLGRYELAGQ
                     AVYYFLQENTLSEEFKEEFEYHRSYADIHFVISGQEQISYGCRLVGEDTGFDPASDIG
                     FVPSEKWVDCLLDGNYFAVFLPGEVHQPNQWAGGQKTVRKFVIKVLLDD"
     gene            4518..5177
                     /locus_tag="U1335_001497"
     CDS             4518..5177
                     /locus_tag="U1335_001497"
                     /inference="COORDINATES: protein motif:HMM:NF016726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF624 domain-containing protein"
                     /protein_id="HEM5231964.1"
                     /translation="MKGKGGRTLVQSLFDANHPAWQLVEKLFDLMLLNGLTVLASLPL
                     FTLGIAKLALQASLWDMNEEGKIKVWSTYWGHFGHQWKQGLVLSLVEIGLTTFCLLDL
                     YLIWGQAGLVFDSFRASCIAILLFSQLLWVYIYPLASRFDLQLKDLFLKGILCLGNML
                     SLTAMVGLVFLLVATFLFYSDLTFLIGLVCLLFFAYAGLSFLFIREFGSRIKTVKKEL
                     E"
     gene            5174..6094
                     /locus_tag="U1335_001498"
     CDS             5174..6094
                     /locus_tag="U1335_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012678977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HEM5231965.1"
                     /translation="MKDLSKYHGIIPAFYACYDEAGEISSERVKALVQYFIDKGVQGL
                     YVNGSSGECIYQSVADRKQILEAVMEVAKGKLTIINHVACNNLKDSVELARHSEELGV
                     DAIAAIPPIYFRLPEYSIAAYWNGISAAAPNTDFIIYNIPQLAGVSLTPSLYKEMLKN
                     PRVVGVKNSSMPVQDIDTFVTLGGEDYVVFNGPDEQFLGGRLMGAKGGIGGTYGAMPE
                     LFLRLNQLIADKDLETARQLQATINTIIGKLVSGHGHMYAVIKEVIRINDGLDIGSVR
                     EPLTALTEADLVIAQEAAQLIRDTKERFGA"
     gene            6104..6994
                     /locus_tag="U1335_001499"
     CDS             6104..6994
                     /locus_tag="U1335_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018367969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM5231966.1"
                     /translation="MKTYLAIDIGGTQIKYGRLDAAGQILESYKMDTEAHKGGPHILA
                     TVKKLVADFHAQAPLSGVAISSAGMVDPDKGEIFYSGPQIPNYAGTQFKSEIETTFGL
                     PCEIENDVNCAGLAEGISGAGQGSQISICLTIGTGIGGCLLVDGQIFHGFSNSACEVG
                     YLHLSDGAFQDLASTTALVQEVARLHNQDPADWNGYKIFQEAKAGEAHCIAAIERMVN
                     YLGQGIANICYVANPEVVILGGGIMAQKDYLFEKIQAALKENLVSSLADKTKLTFAEH
                     ENAAGMLGAFYHFQQKQGLR"
     gene            7092..8060
                     /locus_tag="U1335_001500"
     CDS             7092..8060
                     /locus_tag="U1335_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000795107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylxylan esterase"
                     /protein_id="HEM5231967.1"
                     /translation="MIDNMTLQDMLTYRGRQEVPADFDAFWQNELSKLVDLPDYSLLE
                     KDCGLAQVSCYELNFTGTNGSKIFAKCLFPKSEQAVPVLFYFHGYQGQGPDWSENLKF
                     LAAGYGVVAMDVRGQAGRSQDLGQFEGITIKGQVIRGMLQGPDHLFYKDVYLDVYQLI
                     AIVAQFDFVDQKRLVSYGASQGGALALVAAALSPYISKTVAIYPFLSDFKRVLELGNN
                     SEAYDELFRYFKFSDPFHEREEEVLRTLSYIDVKNLAHLISCPVAMVTGLEDGVCPPS
                     TQFAIYNRLEVEKEMKILPEYAHDAMHVKVNDYVYDYLIGTRFSAN"
BASE COUNT         2203 a         1607 c         1845 g         2416 t
ORIGIN      
        1 taagcgctat cttggatcca atagtagaac ggtgcaagga gaattaaatg gcgatcataa
       61 gcaaagaaat cttaaaagag cagattaaag atggcattat tgtttcctgt caggccttac
      121 ctggtgaacc cttgtatagg gaagaagggg ggattatgcc tttacttgta aaggcggcag
      181 aagaagcagg tgctataggt attcgagcaa acagtgttcg agatattaaa gaaatcaagg
      241 aagtgaccaa tttaccaatt atcggaatta tcaagagaga ttaccctcct caagagcctt
      301 tcattacggc aacgatgaaa gaggttgatg agctagctga gctagacatt gcagttattg
      361 ccctggattg tactaaacgt gagcggtttg atggtctgga catcgttgat ttcatcaagc
      421 aaatcaagga aaaatatcca caccaactct tcatggcaga tatttctacc tatgaagaag
      481 gtgtgacagc ctacgaggca ggtattgatt ttgttggaac gaccctatca ggctacacat
      541 cttatagccg acaagaagat ggaccggata ttgagctggt tgaccgactt tgtcgtgctg
      601 ggattgatgt catcgcagaa ggaaaaatcc actatccaga tcaagtcaaa accattcacg
      661 agttgggcgt agcgggtatt gtcgttggcg gagccattac ccgtcctaag gaaatagcag
      721 agcggtttat ccaggctctg aaaaaatagt tacatagtcc aataacccca tatggggaag
      781 caaaaaaaat aaaggagaag aatgatgaaa aaaatcatac attcattgtt agctggtgtg
      841 gcagttttgt cacttgcagc atgtagtggc ggtaataaaa ctgctgaaaa aactgctgat
      901 tctagtgctt ctggtaagac agaaatcact tggtgggcct tcccagtatt cacacaagag
      961 aatacagaag acggtgttgg tacctatgag caaaaaatta ttgctgcttt tgaggaagct
     1021 aacccagaca tcactgtaaa actggaaacc atcgacttta catctggacc agaaaaaatc
     1081 acgactgcta ttgaagcagg gactgctcca gatgtcctct tcgatgcacc tggtcgtatc
     1141 attacctacg gaaaaaatgg taaattggct gacttgaatg atctcttcac agatgaattt
     1201 gtcaaagatg tcaacaatga taacattatt caagcatcta aggctggtga tactgcctac
     1261 atgtacccac tcagctctgc accattctac atggcattta acaaagcgat gttgaaagat
     1321 gctggtgttc ttgatcttgt aaaagatggc tggacaacag acgactttga aaaagttatc
     1381 aaagctttga aagacaaagg ctacaatcca ggttccctct tctctaacgg tcaaggtggt
     1441 gaccaaggta ctcgtgcctt cttggcaaac ctttatagcg gtagcatcac agacgaaggc
     1501 gtaaccaaat atactactga ttcagagcaa atgatcaaag ccttggataa ggcagctggc
     1561 tggattaaag atggctacat gatgaatggc tcacaatatg caggtggcga cgacatccaa
     1621 aactttgcaa acggtcaaac ttcttacact atcctttggg gacctgctca aaatggtatc
     1681 caaggacaat tgttagaagc atctaaagta gaagttcttg aagtaccatt cccatctgaa
     1741 gatggtaaag cagctcttga ataccttgta aacggctttg caatcttcaa caatggcgac
     1801 gaagctcgtg tagcagcatc taagaaattc atccagttca tcgcagatga caaagaatgg
     1861 ggtcctaaga acgttgttcg tacaggtgcc ttcccagttc gtacttcatt tggtgctctc
     1921 tatgatgacg aacgcatggc tatgattgac aagtggactg gttactactc accatactac
     1981 aacaccattg atggatttgc tgaaatgaga actctttggt tcccaatgct tcaagctgta
     2041 tcaaatggcg aaaaagaagc agcggctgct ttgaaagagt tcactgagca agcaaacgca
     2101 acgattaaat aaatgaattg aatgaggctc cttttctctg ttagctattc aatagatatg
     2161 gaaaaggagc cgttcctttt atgcttaatg aaaatcaaaa aaattttcat cacttatttt
     2221 ggttttcaat gagttttgtt acaagattag aatggaggtg ttctaagtgc agataaataa
     2281 gattagaatg cgggaaacca ttgtatccta taccttctta gctcctattc tcattttctt
     2341 cacagttttt gtgctagctc caatgattat gggatttgtc accagtttct ttaactatac
     2401 catgacagat tttagctttg ttggactaga taactatgta cggatgttta atgatccgat
     2461 ctttatcaaa tctctgatta acacgttaat tatcgtggtt ggctcggtgc cagttgttgt
     2521 cttcttttca gtctttgtcg cttcacagac ctatgaaaag aatgtcatcg ctcgttcgtt
     2581 ttatcgggct gtattcttcc tgcctgttgt aacgggttcc gttgctgtaa cggttgtttg
     2641 gaaatggatt tacgatcccc tgtcaggtat cttgaacttt gttttgaaat ctggcggtct
     2701 tattgaacaa aacatcagtt ggttagggga taaacagtgg gccttgttag ccatcatcat
     2761 tatcctctta acaacttcag ttggtcagcc gattattctt tacattgcag ctctaggaaa
     2821 tattgataat tccttggtag aagctgcgcg tgtggacggt gccaacgaac atcaggtttt
     2881 ctggcaaatc aaatggccaa gcctcttacc aaccactctt tacatcgcag ttattacaac
     2941 cattaactcc ttccagtgtt ttgcccttat tcagctcttg acctcaggtg gaccgaacta
     3001 ttcaacctcc accctcatgt actacttgta cgaaaaggcc tttaagttgt ctgagtatgg
     3061 atatgcaaac accatgggtg ttttcctggc agtcatgatt gcactgattt cctttgccca
     3121 attcaagatt ttgggtaacg atgtggaata ctagaaagga ggaatttatg aaaaagaaaa
     3181 ccattacacc ctttggtgtt atttcaacga ttatcttgct cttgttgacc atccttttca
     3241 tcttcccctt ctattggatt atgaccggtg cctttaagtc acaacctcat accattgtga
     3301 ttccgcctca gtggtggcca acccagccaa cgctagaaaa ctttaccaag ttgactgttc
     3361 aaaacccagc cttacagtgg ctatggaact cagtatttat ttccttgacg accatgattt
     3421 tggtttgtat gacctcttct ctagctggtt atgtcttggc taaaaaacgt ttctatggac
     3481 agcggatctt gttctcaatc ttcatcgctg ccatggcttt gcctaaacag gttgtacttg
     3541 tgcctctggt acggattatc aactttatgg ggattcatga taccttagca gcggtgattc
     3601 taccgctagt tggctggcca tttggtgttt tcttgatgaa acaattctct gaaaatatcc
     3661 caacagagct cttggaatct gctaagattg atggttgtgg tgagctgtca accttctgga
     3721 atgttgcctt tccgattgtc aaaccaggtt ttgcagcctt ggctatcttt acctttatca
     3781 actcttggaa tgactatttc atgcagttgg tgatgttgac ttctcgtcag aatttgacca
     3841 tttcgctagg tgttgcaacc atgcaggctg aaatggcaac caactatggt gttatcatgg
     3901 cgggagcggc aatggctgca gtaccaattg tcactgtctt ccttgtcttc caaaaatcct
     3961 ttactcaagg tatcaccatg ggagcagtta agggataaga atctggttaa ttcatggaga
     4021 tagaactatg atttatgatc atattgacaa ttgttcgcaa tacaagggac tacatcccaa
     4081 cttggatctt gccttggctg ttttggaaaa gggtgatttt cgagaccagg acctaggcag
     4141 gtatgaacta gctggtcagg ctgtctatta tttccttcag gaaaatactc tatctgaaga
     4201 gttcaaggag gaatttgaat accatcgttc ctacgcagat atccattttg ttatcagtgg
     4261 acaggaacaa atttcctacg gttgtcgtct ggttggagaa gatactggtt ttgatccagc
     4321 aagtgatatc ggttttgttc cgagtgaaaa atgggtggat tgcctacttg atgggaatta
     4381 ctttgccgtt ttcctaccag gtgaggttca tcagccaaac caatgggcag gtggacaaaa
     4441 gactgtccgc aagtttgtca ttaaagtctt actagacgac tagttctcaa taaaaaaata
     4501 gaaaggggaa gatgtaaatg aaaggaaagg gtggtagaac actggttcag tccttgtttg
     4561 atgccaatca tccagcatgg caactggtag agaaactctt tgatctcatg ctcttaaatg
     4621 gcttaactgt tttggcaagt cttcctcttt ttaccttggg aattgccaaa ctagccctcc
     4681 aagcgagttt atgggacatg aatgaagaag ggaaaatcaa ggtctggtcg acctactggg
     4741 gtcattttgg tcaccagtgg aaacagggct tggtcttgtc actggtagaa attgggctaa
     4801 cgaccttttg cctcttggat ctatatctga tttggggaca ggctggtctg gtatttgaca
     4861 gttttcgtgc aagctgtatt gccatcctgc tttttagtca gctactttgg gtctatatct
     4921 acccgttagc cagtcgattt gatttgcagt tgaaagactt attcctaaaa ggaattttat
     4981 gcctggggaa tatgttgtcc ttgaccgcta tggttggtct ggtctttcta cttgtagcta
     5041 ccttcctctt ttattcagac ctgacatttt taatcggtct ggtttgtctg ctattttttg
     5101 cctatgcggg cctatccttt cttttcatta gggaatttgg ttcaagaata aaaacagtta
     5161 aaaaggaatt agaatgaaag atttatcgaa atatcatgga attatcccag ccttctatgc
     5221 ctgttatgat gaggctggtg agattagttc ggaacgtgta aaagccctgg ttcagtattt
     5281 cattgacaag ggtgttcaag ggctttatgt caacggttca tctggtgaat gtatttacca
     5341 aagtgtggca gaccgcaagc aaattcttga agcggtcatg gaagttgcca agggcaaatt
     5401 gaccatcatc aaccatgtgg cctgcaacaa tttgaaggat agcgtggagc tagctcgtca
     5461 ttcggaagaa ttaggtgttg atgctattgc ggccatccca ccgatttact tccgtttgcc
     5521 agagtacagt atcgctgctt actggaacgg tattagtgca gctgcaccaa acacagattt
     5581 cattatctac aatatcccac aattggctgg tgtttccttg acaccaagtc tatataagga
     5641 aatgttgaaa aatccacgtg tagttggggt gaaaaattcc tctatgccag ttcaggatat
     5701 tgataccttt gtaacccttg gtggcgagga ctatgtggta ttcaatggtc cagatgagca
     5761 atttctcggt ggtcgcctca tgggggcgaa aggtggaatt gggggcacct atggtgctat
     5821 gccagaactc ttcctacgct tgaaccaatt gattgcggac aaggacttgg aaacagcccg
     5881 tcaattgcag gcgactatca atactattat tggtaaactg gtttccggtc atggtcatat
     5941 gtacgctgtc atcaaggaag tcatccgtat caatgatggc ttggatattg gttctgttcg
     6001 tgaaccgctg acagccttga cggaagcaga cttggtcatt gctcaagaag cagcccaact
     6061 cattcgagat actaaggaaa gatttggtgc ctaggaggtg tctatgaaaa cctatcttgc
     6121 cattgatatt ggcggaactc agattaaata tggtcgtctg gatgcagcag gtcagattct
     6181 tgaaagttac aagatggata cggaagccca taagggaggt cctcatatcc tagcgacagt
     6241 caaaaaactt gtggcagatt tccatgccca agcccctctt tctggtgtag ccatttcttc
     6301 agctgggatg gttgaccctg acaagggaga gattttctac tcagggccac aaattccaaa
     6361 ctatgctggt acccagttta agtctgaaat tgaaacaact ttcggtcttc cttgcgagat
     6421 tgaaaatgat gtcaactgtg cgggcctagc agaaggtatt tcaggtgctg gtcagggcag
     6481 tcagatttcc atttgtttga ccattggtac gggtatcgga ggttgcttgc tagtggatgg
     6541 tcaaatcttc catggcttta gtaattcagc ctgtgaggtc ggctatctcc acctttcaga
     6601 tggtgccttc caagacctag cttcaacaac ggctcttgtt caagaagtgg ctcgtttaca
     6661 taatcaggat ccagcagact ggaatggcta taagattttc caggaagcca aggcaggaga
     6721 ggctcactgt attgctgcca ttgagcgcat ggtcaactat cttggtcaag gtattgccaa
     6781 tatctgctat gtagccaacc cagaagtggt tattcttggt ggtggtatta tggcgcaaaa
     6841 agattatctc tttgagaaaa tccaagcagc ccttaaagaa aacttggttt ctagcctagc
     6901 agacaagacc aagttgacct ttgccgagca tgagaatgct gctggtatgc tgggagcctt
     6961 ctatcacttc caacagaagc aggggctaag ataatatcag gtaatataag atggagagct
     7021 tccttccctt tctcttctcc tttagatttg gaagctttcc gtcttttttc tagttgtaga
     7081 gaggttgaat gatgattgat aatatgacct tgcaggatat gctgacctat cgtggtcggc
     7141 aggaagtccc tgcagatttc gatgccttct ggcagaatga actatctaag ttggtagatt
     7201 taccagatta tagcttgctt gaaaaagact gtggtttagc tcaagtatcc tgttatgaat
     7261 taaattttac aggaacaaat ggatctaaga tttttgccaa gtgcctcttt ccaaagagtg
     7321 agcaagctgt tccagttctc ttttatttcc atggttacca gggtcagggt ccagattggt
     7381 ctgagaactt gaaattttta gcagctggtt atggggtagt agctatggac gtacgtgggc
     7441 aggctggtcg ttctcaagac ttggggcaat ttgagggaat aactattaag gggcaggtta
     7501 ttcgagggat gctgcaagga ccagaccact tgttttataa ggatgtctat ttggatgtct
     7561 atcaactgat tgctattgtt gcacagtttg actttgttga tcagaagcgc ctggtgtctt
     7621 atggtgcctc acagggaggg gccttggcct tggtggcagc cgctctcagt ccctacatca
     7681 gtaaaactgt agccatctat cctttcctat ctgacttcaa acgggtcttg gaacttggca
     7741 acaacagtga agcctacgac gaattgtttc gttatttcaa attttcagat ccgtttcatg
     7801 aaagggaaga ggaagttctt cgaaccctat cctatattga tgtaaaaaat ctggctcact
     7861 tgatttcatg cccagtagct atggtgacgg gcttagaaga tggagtttgt cctccatcaa
     7921 cccaatttgc tatctacaat cgactggaag ttgaaaaaga gatgaaaatc ttaccagaat
     7981 atgcccacga tgccatgcat gtaaaggtta atgattatgt ctatgattat ttaatcggga
     8041 cacgtttttc ggctaactaa ttaaagggga g
//
LOCUS       DASGAC010000096         8003 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.096, whole genome shotgun sequence.
ACCESSION   DASGAC010000096 DASGAC010000000
VERSION     DASGAC010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 8003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8003
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.096"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            13..3279
                     /gene="rexB"
                     /locus_tag="U1335_001501"
     CDS             13..3279
                     /gene="rexB"
                     /locus_tag="U1335_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HEM5231968.1"
                     /translation="MKLVYTDIRNPLTQYLTDTAAEFAKEGKRVFYIAPNSLSFEMER
                     KVLEYLPEQATFDIIVTRFGQLARYLMIDRKEAGQPLDDVGLAMIFFRVLSQFEDGDL
                     KVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMDSPDKQADLVKIFLAVTDILSK
                     EGFEHQSKLAQLTRLVETGQLDEQLKNIVLVVDGFSRFSAEEESLVRALNERVSEILI
                     GVYASKKAVQATYIEGNVYQANVDFLRQLSAQFQTKATYIGQEPVLDSIGKFSKNMEA
                     YYDYSGTMIDLTPADQEKIRLWEVVNQKEEVEQVATAIRQHVHQGARYKDILLLLGDV
                     DSYKLQIGKIFDKYDIPYYFGKAEEMSHHPLVHFVESLERLRRYRFRAEDLLNLLKSG
                     LYASISQKELDLFESYILFADMKGQAAFSRAFSVNGRADYDAEVIKEKRLVYDLTVLE
                     PLRSKIMEPLNQLFKAGPQSGVALLEKFMAFLEAIELPKNMEKMSRNLSEVEQEKEEQ
                     VWKSFTHLLENFHQIFGKEKLKMDDFLAILQAGMQASHYRTVPATVDVVNVKSYDLIE
                     PHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSASSSRFDLVSRENIKKNHA
                     AMMSLLNSATEQLVISTPQIYNEGEDSLSPYIKILQKMGLKSEERGRMKTLSPQDIGH
                     YKSLLSRLIESERPSLDNEEWEGQTAFWTVLVRHLKKKLESQGIEIPTITGAITSKQL
                     SEETLAALYPEDKPLNLSASSLTNFYNNQYLYFVRNVLRLREQESIHPTAFQHGLFLH
                     RIFERVVMDQSDLDFDQKVDKAILRTRDEAEFAMFYNQDADARYTEEVLDKIARSSAT
                     ILRDNDLVEIDGQEKSFRQDKALVFDLQNGKSVHVNGTIDRLDTLQINQAVGVVDYKS
                     SDQSFSVGDFYNGLKPQLVTYLAALQELDETKDKPVFGAMYLHLQDPIIKLKDTKNLE
                     QLKGAANTSLVYKGLFLKEESLGLNHFYQTRNQLYTEDEFAVLLYHNQELYKQAAKDI
                     LDGRFAINPYTKDGRSVAGEQLKAITGFEADRHMGMARRLVKEAKRQDWMERMKGGQD
                     "
     gene            3279..6929
                     /gene="addA"
                     /locus_tag="U1335_001502"
     CDS             3279..6929
                     /gene="addA"
                     /locus_tag="U1335_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-exonuclease AddAB subunit AddA"
                     /protein_id="HEM5231969.1"
                     /translation="MAFEQFLSAEEIKAVQLAEANSDKQQKRTPEQIEAIYTHGQNVL
                     VSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFTVKAAGELKERIEKNLNETIAET
                     TDMELRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
                     KEVFDQLFTDYLEQDENGEFRKLVRNFSGNRKDNSGFRQVVYQVHDFSQSTSSPTKWL
                     KEQAVQADLYSQEHLEQILEQGFKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANV
                     EEVLDLLTGLDSLDQKDLMERVERILLINDQSRGKGLTNANRPKDEHLIAFKEEYNTG
                     KNQIISELRDLGQEVYELTLLKDYQVQALPLLILLRDFVLDFSQAYLDVKIKEAAFEF
                     GDIGHFAIRILEENADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGD
                     IKQSIYRFRQADPMIFQEKFELYQANPQAGKLILLKENFRSQIEVLEATNAIFTRLMD
                     RQVGEIKYDDTHSLAAGSPGQKIAQPKHEMEYLIYDQQESAHSSTDAEEETPLTAGEI
                     EVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSL
                     EVMIMLDTLRVINNPLNDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMELSIA
                     NVGQHSELIHGDLKEKIKDFLSVLENWRAYAKLHSIYDLIWKIFNEKFYYDYVGALPN
                     GSKRQANLYALGLRANQFEKTGYKGLSRFIAMIDRALANDKDLADVQEFLPQNAVQLM
                     TIHKSKGLEFKYVFLMNIDKRFNLDDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQV
                     RVLMNTLPYQNNLQELKIANLSEQMRLLYVALTRAEKKLYLVGKGNADKLAEKYDGKK
                     ENGVLAQSTRESMATFQDWILAIDEAFSGEDLRFKKVFVTDEDLTEEKIGKLTLKSKL
                     EDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPSLRTPSQIKKLYEPVLEQEG
                     MEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVREALEAV
                     HAVQAVKDKINIQMILDFFDTDLGREILANTDKLHREAPFASLQTDSLSQEQFVLRGI
                     IDGYLLYADHIVLFDYKTDKYDQPIQLSQRYQAQMHLYAEALKKAYKIDRVDCHLILL
                     GGERIEVVEVKI"
     gene            complement(7216..7860)
                     /gene="plsY"
                     /locus_tag="U1335_001503"
     CDS             complement(7216..7860)
                     /gene="plsY"
                     /locus_tag="U1335_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEM5231970.1"
                     /translation="MLVNLILLFIAYLLGSIPSGLWIGQTFFNINIREHGSGNTGTTN
                     TFRILGPKAGTIVFVIDFLKGTLAALLPLIFHAQGISPIVFGLMAVLGHTFPIFAQFK
                     GGKAVATSAGMLLGVAPAFCLYLVLIFASSLYLTSMVSFSSVLAAALAILGALLFPAI
                     GIILPSYDWLFTVIIVFLGSFVIIRHKGNIQRILKKEENLVPFGLNLTKQKKRA"
BASE COUNT         2378 a         1565 c         1872 g         2188 t
ORIGIN      
        1 tgagaatttg atatgaaatt agtctataca gatattcgca atcctctgac gcagtattta
       61 acggataccg cagcagaatt tgctaaggaa ggtaagcgag ttttttatat tgctccaaac
      121 tctctatcct ttgagatgga acgcaaggtc ttggaatacc tacctgaaca ggcaactttt
      181 gatattatcg tgacccgttt tgggcaattg gcccgctatt tgatgattga taggaaagaa
      241 gcaggtcaac cgctggatga tgttggtctg gccatgattt tctttcgtgt tctatcgcaa
      301 tttgaagatg gcgacttgaa agtctatggt cgtttgcaga cagattttgg gttcattaac
      361 cagctagttg ctttatacaa agaattgcaa cgggcaaata tgtctatttt ggacttggaa
      421 gccatggact caccagataa gcaggctgat ttggtaaaga tttttctggc tgtaacagac
      481 attttgtcca aagaaggctt tgagcatcag tctaagttag cacagctgac tcgcttggtg
      541 gaaactggtc agttggatga gcagttgaag aacattgtac tggtggtaga cggattttct
      601 cgtttttcgg cagaagaaga atctttagta agagctttaa atgagcgggt gtcggaaatc
      661 ctgattggtg tatatgccag caagaaagct gtgcaagcga cctatattga aggaaatgtt
      721 tatcaagcta atgttgattt tttacgtcag ctatcagcgc agttccagac taaggcaact
      781 tatattggtc aagagccagt cttggacagt atcggtaaat tttcaaagaa tatggaagcc
      841 tattatgact acagcgggac catgatagac ttgactccag cagaccaaga aaaaatccgg
      901 ctatgggaag tcgttaacca aaaagaagag gtggagcagg ttgcgactgc aattcgtcag
      961 catgtgcatc aaggggctcg ctataaagac atcttgttgc tcttggggga tgtggatagt
     1021 tacaagttgc agattggcaa gatttttgac aagtatgaca ttccttacta tttcggcaag
     1081 gcagaagaga tgagtcatca tccgttggtc cattttgtgg agtccctgga acgcttgcgt
     1141 cgctatcgtt tccgagcgga agacctgctc aatctcctca aatctggttt gtacgccagt
     1201 atttcccaaa aggagctgga cctatttgag tcttacattc tctttgcgga tatgaaggga
     1261 caagctgctt tttcgagggc tttttcggtc aatggcagag cggactatga cgctgaagtc
     1321 attaaggaga aaaggcttgt ctatgatttg actgtcttgg aacccctacg ttctaagatt
     1381 atggagcctt tgaaccagct gtttaaggct ggaccacaat ctggagttgc cttgcttgag
     1441 aaatttatgg catttttgga ggcaattgag cttcctaaaa atatggaaaa aatgtctcga
     1501 aatttgagcg aagtagagca agaaaaagaa gagcaggtct ggaaaagttt tacccatctt
     1561 ctcgagaatt ttcatcagat tttcggaaaa gaaaaattga aaatggatga ttttctggct
     1621 attttacagg ctggaatgca ggccagccac tatcgcaccg ttcctgcaac agttgatgtg
     1681 gtcaatgtca aatcctatga tttgatcgag ccgcacactg caaagtatgt ttatgctatc
     1741 ggaatgggcc agtccaattt tccaaaagtt gctaagaata ccagtctatt gacagaagaa
     1801 gagatggaaa aagtcaatct tgtctcagct agttcttcac gttttgattt ggtcagccga
     1861 gagaatatca aaaagaacca tgctgctatg atgtctctgc ttaattctgc gacagaacag
     1921 ttagttattt ctactcctca gatttataac gaaggtgaag atagtctctc tccttatatc
     1981 aagattctcc aaaaaatggg gttgaaatcc gaagaacgtg gacggatgaa aacacttagt
     2041 ccgcaagata tcggtcacta caagagtctc ttatcccgtt tgattgagtc agaaagacct
     2101 tctcttgata atgaagaatg ggaagggcag acggccttct ggacagtctt ggttcgccat
     2161 ttgaagaaga aattggagtc gcaaggcatt gaaattccga ccattactgg cgcaattact
     2221 tctaaacaac tttcagaaga aaccttggct gctttatatc cagaggataa gccgctcaat
     2281 ctttcagcat ccagcttgac caatttctac aataaccaat atctttactt tgtccgtaat
     2341 gttcttcgct tgcgggaaca ggaatccatc catccgactg cctttcagca tggtttgttc
     2401 ttgcatcgga tttttgaacg agtggtcatg gaccaatctg atctagattt tgatcaaaaa
     2461 gtggacaagg ccatcctgcg tacgcgtgac gaggcagaat ttgctatgtt ttataaccag
     2521 gatgcggatg ctcgttatac ggaggaggtg ctggataaga ttgctcgttc cagtgcgact
     2581 attttgcggg ataatgattt ggttgaaatt gatggccagg aaaagagttt ccgccaggat
     2641 aaggcgctgg tttttgacct tcaaaatggc aagagtgtgc atgtaaatgg taccattgac
     2701 cgcttggata ccttacaaat caatcaggct gtcggtgttg tggattacaa gtccagtgac
     2761 caatcttttt cagttgggga tttttacaat ggtctcaaac ctcagttggt aacctacttg
     2821 gcagccttgc aagagttgga tgaaaccaag gataaacctg tttttggagc tatgtatttg
     2881 catttgcagg atccgattat caaattaaaa gacacgaaga atttagaaca gctaaaagga
     2941 gcagccaata ctagcttggt ttacaagggg cttttcttga aggaggaaag tctggggctc
     3001 aatcatttct atcagactcg taaccaactc tacacggaag atgagtttgc ggttttattg
     3061 taccacaacc aagaactcta caaacaagct gccaaggaca tcctggatgg tcgctttgct
     3121 attaaccctt ataccaaaga tgggcgttcg gtggcaggtg agcagctgaa ggcaatcact
     3181 ggttttgagg cggatcggca catgggaatg gcgcggcggt tggtcaaaga ggccaagcgt
     3241 caagattgga tggaacgaat gaaaggaggt caggactaat ggcttttgaa caatttttaa
     3301 gcgcggaaga aatcaaggct gtgcagctgg cggaagccaa ttctgataag caacaaaaac
     3361 gcacacctga gcagattgaa gccatttaca cgcacggtca gaatgttctg gtctctgcat
     3421 cggctgggtc aggaaagacc ttcgtcatgg ttcaacggat tttggataag ttgaagcgtg
     3481 gtgtgggaat cgaccagctc tttatctcga cctttacagt caaagcggct ggtgagttga
     3541 aggagcggat cgagaaaaat ctcaatgaaa ctattgcgga gacgaccgat atggaattgc
     3601 gacggcattt gtctgcccag ttggcggatt tgaccaaggc ggatattggg accatggact
     3661 cctttacgca gaaattggtg acaacctacg gttatagcct tggtatttct ccgcagtttc
     3721 ggattttaca ggatgagaca gaaaaagcaa gtctaaaaaa agaggttttt gaccagctct
     3781 ttacagatta tcttgaacag gatgaaaatg gtgagttccg caaactggtt cgcaattttt
     3841 cgggcaaccg taaggataat agtggtttcc gtcaggttgt ttatcaggtg catgatttta
     3901 gccaatcgac gagcagtcca actaaatggc tgaaagagca ggctgttcaa gctgatttgt
     3961 acagtcaaga gcatttagag cagatcttag agcaaggctt taaggaaaaa gttttagaca
     4021 agctctatca agctgcagat ttcttccgct accatgtgga atggggcaga aatgactttg
     4081 gttccgccaa gtattttgca aatgtggaag aagtcttgga tttgctgaca ggtttagata
     4141 gtctggacca gaaggacttg atggaacggg ttgaaagaat ccttctcatc aatgaccagt
     4201 ccagaggcaa gggtttgacc aatgccaatc gaccaaaaga tgagcatttg atagccttta
     4261 aagaagaata caatactggc aagaaccaga ttatctcaga attacgagat ttgggtcagg
     4321 aagtttatga attaaccctg ctgaaagatt atcaggttca agctttgccc ttgctgatat
     4381 tattacgtga ctttgtcttg gatttttcgc aggcttatct ggatgtcaaa atcaaggaag
     4441 cagcttttga atttggcgat attgggcatt tcgctattcg tattttagaa gaaaatgcag
     4501 acatccgcca gtttttccaa gaaaaatacc acgaagtcat ggtggacgag taccaggata
     4561 acaaccatag ccaagagcga atgctggacc tgctgtctaa cggtcacaac cgctttatgg
     4621 taggcgacat taagcagtcc atctatcgat tccgtcaggc ggatccgatg attttccaag
     4681 agaaatttga actgtatcag gcaaatcctc aggctgggaa attgattttg ctcaaggaaa
     4741 atttccgtag tcagattgag gtcttggagg caacaaatgc tattttcacg cgcctgatgg
     4801 accgtcaagt aggggaaatc aagtatgacg acacccacag tctagcggct ggtagtcctg
     4861 gtcaaaaaat tgcccagccc aagcatgaga tggaatattt gatttacgac cagcaggaga
     4921 gcgcacattc ttcaacggat gctgaggaag aaacacctct gactgctggt gaaattgagg
     4981 tcgttgcaaa agagattatt cgtcttcaca atgaagaagg agcagacttc aaggacatca
     5041 ctctcttggt acaaaaacgg acgcacaatg acctcattat gtccattttt gaaaaacatg
     5101 ggattcctat tgtggcagat ggcggagcag cctcctatct gcaatctttg gaagtcatga
     5161 tcatgctgga taccttgcgg gttatcaata atccactcaa tgactatgct ttggttgccc
     5221 tgcttaaatc acctatgttc cgattcgatg aagatgaact gacgcggatt tccttgcagg
     5281 ctgggacagg tttcttttac cagaaaatgg aattatctat tgcaaatgtt ggacagcatt
     5341 cagaattgat tcatggcgac ttgaaggaga aaattaagga tttcttgtct gtcttagaaa
     5401 actggcgtgc ctatgccaag ctgcattcta tttatgacct gatttggaag attttcaatg
     5461 aaaaattcta ctatgactat gtcggtgctc ttccaaatgg cagcaaacgt caggccaatc
     5521 tatacgcact tggtctgcgt gccaaccagt ttgaaaaaac aggttacaag ggtttgtccc
     5581 gcttcatcgc catgattgac cgtgccttag caaatgataa ggatttggca gatgtacaag
     5641 agtttctacc gcaaaatgct gtacagctga tgaccattca taagtcaaaa ggtctggagt
     5701 tcaaatatgt cttcctcatg aacatcgata agcgattcaa cttggatgac cattaccagt
     5761 cagtcattat tagccggaaa aatggtctag gtatccaata tttagcggat atgaaagata
     5821 aggtaaatag cccattgcct caggtgcgag tcttaatgaa cacccttcct tatcaaaata
     5881 atctccaaga gctaaaaatt gccaatctct cagaacaaat gcggttgctt tatgttgcac
     5941 taacgcgtgc cgagaagaag ctgtatctgg ttggaaaggg taatgctgac aagttagctg
     6001 aaaaatacga tggcaaaaag gaaaatggcg tactagccca atcaactcgc gaaagcatgg
     6061 cgaccttcca agactggatt ctagccattg atgaggcttt ttcaggagaa gacttgcgct
     6121 tcaagaaagt ctttgtgacg gatgaggatt tgacagagga gaagattgga aaacttacat
     6181 tgaagagtaa gctagaagac gccagcctta aagatattcg tcaatcagaa gacatcgccc
     6241 aggccttgga ccagttgtcc tctgtccaag agttgaacga acgctataag gctgctatag
     6301 aattaccaag tttacggact ccaagtcaaa tcaagaaact ctatgagcct gtcttggaac
     6361 aagaaggcat ggaagttatg gaaaaatacc agccaaaacg gaccttcaac ttgccagatt
     6421 tttccaagaa accaaaaatc actggagccc aagtcggttc agcagtccat gaactcatgc
     6481 aacgcttgga tctgtcttgg ttggtgacag aagatacggt aagagaagcc ctagaagctg
     6541 ttcatgctgt gcaagcggtt aaagataaaa tcaatattca gatgattttg gatttctttg
     6601 atacagactt aggaagagaa attctagcca ataccgataa actccaccga gaagctccat
     6661 ttgcaagttt gcagacagat tctttgtcac aagaacaatt tgtccttcgt gggattatcg
     6721 atggctacct actgtatgct gatcatattg tcctctttga ttacaagaca gacaaatatg
     6781 accaaccaat ccaactcagc caacgttacc aagctcaaat gcacctctat gcggaggcat
     6841 tgaaaaaagc ctacaagata gatcgtgtag actgccattt gattttgctt ggtggggaga
     6901 gaatagaagt ggtcgaagtc aaaatatagt catttagttt ttcttttatt acttcgacgc
     6961 aagaggaaac tccgtttcct tatttccaac ttcaaacatt ccactggatt gtttgaactc
     7021 gctttgccgt actctgcagg ggtgacttgc tccgcaagtg ctatctccaa ccttgcacag
     7081 tcactcgact gtacaagcta tctgcagcta ttgaggcgaa ctttgttcgc tatgtctcca
     7141 acctccaaag gttccccgaa cctttggagc gagtactaaa agtaaactaa aagactataa
     7201 attaaaagcg agtggctaag ctcgcttttt ctgtttggtt agattgaggc cgaatgggac
     7261 aaggttctct tcttttttca aaatccgctg gatatttccc ttgtgacgga tgatgacaaa
     7321 actgccaaga aagacgataa tcactgtaaa gagccagtcg tagcttggca ggatgattcc
     7381 tattgctgga aatagcagag ctcctaagat tgctaaagct gctgctaaga cgctagagaa
     7441 ggaaaccatg gacgtcaagt agagtgaact ggcaaagatt agaacgagat agaggcaaaa
     7501 agcaggtgcg acgccaagaa gcataccagc agatgttgca accgcctttc cacctttgaa
     7561 ttgggcaaag atagggaaag tgtgccccag tacagccatt aacccaaata caatcggaga
     7621 aattccttgg gcatgaaaga tcagcggaag caaggctgcc aaagttccct tgagaaaatc
     7681 aattacaaat acaatcgtac cagcctttgg ccctaaaata cggaatgtgt tggttgttcc
     7741 agtatttccc gaaccatgtt cacgaatgtt gatattgaaa aaagtttgac ctatccaaag
     7801 tcctgacggg atagatccca ataaatatgc aataaatagt aaaataagat tgactaacat
     7861 gttttcatta tagcatattt tcatctaatt tagtccaaaa tcttattttg ccagtactta
     7921 agccaatgaa gctcttgata atagaagggg agtgagaaag aactcgattg ataaaataga
     7981 gttcgtcaac aagtccttat ttc
//
LOCUS       DASGAC010000097         7998 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.097, whole genome shotgun sequence.
ACCESSION   DASGAC010000097 DASGAC010000000
VERSION     DASGAC010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7998
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.097"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(145..252)
                     /locus_tag="U1335_001504"
     CDS             complement(145..252)
                     /locus_tag="U1335_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019773529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative holin-like toxin"
                     /protein_id="HEM5231971.1"
                     /translation="MTAFEVVQTILSFGGFTVALIGLCYKIFKDEDKKK"
     gene            complement(470..3100)
                     /locus_tag="U1335_001505"
     CDS             complement(470..3100)
                     /locus_tag="U1335_001505"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012948.1,HMM:TIGR04320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEC10/PgrA surface exclusion domain-containing
                     protein"
                     /protein_id="HEM5231972.1"
                     /translation="MNKKSIKTLATGAAIATAIGATSVPAFAEEVTPTVETNTDTVVS
                     ATETTAVEAPKTSADVKPALDAQQAVVDATAAEASQAQADADAADQAVTTAQTDVDAA
                     KQAVKDAEENLANATPENIAANQADQTANLADQTANATETDEVNAEIASQTQTVADAQ
                     VAVDTAQAEKDQANSAVTAAETDVKSAQDALSGTGLAEAQANLDNASKAVTDAKANVD
                     TATQAVEDAKKADTKRQEAIDAATTDVSVKTDAVDTASSRVTATQNNVASATEALAKA
                     NDAVTAATDALKNVDTLTISGPIEEFKNKLNEYTIVRNKVMFDSQDHTPDEVKELEAE
                     KERLSSELTAMGAEIFNSYKLELAPNDEPFDPNNLTYEQRLELSLFAAQIMNTLREKA
                     GMTDYVVVSKRTIDEAQRQSDLHVEHYRTYNKAFHGHKPSLPGYGENIGTLFANVNEN
                     ATMNTAKRIITNLILAETFKDANSEWGHTGNLIGGYEVQVDRKGNPISEEKFIGLEIG
                     ISMEQIGGQINKHTVFVNDRHLDYLPDTDPSKVNNIIYQVPSTSSLQAALKKAKADQV
                     AAQTALTNAKTALTTASNQYATALAAKTQAEKTLADATATPLQTQVAENNLRLATIAL
                     QNAETRKVDAQKAVDNFSANLADKKAALDTAKANLAQAQATATEKATTLETAKTNLAK
                     QQATLDSLNKDKDALLAEKDRLVEEAKALAEELDGYMNAPARLEKAKATLAEKQAALT
                     EAQAKAETAQNKLETVTAKLAEEKAKLAELQAEYDKLKDLEDKAKDNVIATLPDGTIV
                     AVPKDAPTAVEKPAIEGEVVVTTPQAGVTVTPQGITYSRVDRAKTLPNTGEQTSLLAL
                     AGVAVLSSLGLASARRRKQG"
     gene            3251..3586
                     /locus_tag="U1335_001506"
     CDS             3251..3586
                     /locus_tag="U1335_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5231973.1"
                     /translation="MKQSLRTFIGKRIRLLRLQKGLTQEQVEAMADLGTNYVYKLEHL
                     ETNIKINTLEKVMEALDCDIASFFDITPKDDNPHIADFITNLKSIPEAQQEEILSAFN
                     TIINQLKLK"
     gene            complement(3605..4174)
                     /locus_tag="U1335_001507"
     CDS             complement(3605..4174)
                     /locus_tag="U1335_001507"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231974.1"
                     /translation="MGRLPADCKEYKGKKYYPSSYLAKNLYLSPERSRAVLQDYENIS
                     ELGTNPKFYDKQLLDKIIDDYNNDKIKSKALQKRKEKERAKKIRLEEERAKAEKLTYE
                     LSEPMERLGPYFLANQMKETLVLTMLNNLFAALGYEFDLDLFYEDVEKIADYECSVRE
                     IGVARPLDIVEAEDRLLGNDGYLKNKNNR"
     gene            4446..4802
                     /locus_tag="U1335_001508"
     CDS             4446..4802
                     /locus_tag="U1335_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000896440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231975.1"
                     /translation="MVFYKKTNGYSSSLAQQVLSDEVVKLAGKQVEDQFEFVKTGETV
                     NGKEKMKRTENVQAHHIYVATDSQNPFKIKFLPENKPDLSGFEIGDTVTFEGLEAFEN
                     NYGQVYFRATGIKKGK"
     gene            4805..5986
                     /locus_tag="U1335_001509"
     CDS             4805..5986
                     /locus_tag="U1335_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
                     /protein_id="HEM5231976.1"
                     /translation="MTFLVNKDQNQQQTSGAKIPDVAEFGKDRYSLAQFILRNLNNAL
                     DINDESSYLNSFDIKVLSNDSGMLFIPNLPVSYPINNQLYFNLYAICAGILYPYKTLL
                     PQNNAYFVPYDTDNPNQARAFFFPWLDGIPSRLQIKDINRFVNERVSENCIPLMSNGV
                     NGINLDMNNVVHLAISGASGSGKSSFVRYLILCLKKFTNQIICIDPKLSDIYILGKKL
                     GLEVFAPTQGSNLNSFITEVNELLARVIAKIFERQEILLTQPNKHFERIYVVIDELLA
                     LVQGSSKQAREAFAQLLGTIALLGRQTQISLVLLSQRFDATAFGGNTAVREQLNCICI
                     LGEVNANTCQFLLPNTDVSNIVVPAGIGTGIIKFTDSKHQTHIMPLLTPTYNIRKDKV
                     S"
     gene            5983..6567
                     /locus_tag="U1335_001510"
     CDS             5983..6567
                     /locus_tag="U1335_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003102164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231977.1"
                     /translation="MKNYFNKYNLINFSIITLLTTALVERFAWFLIVKMHLTSFFAAV
                     LFILILRLIIIVAVALLFFTVIIELGNRNAEFDYFSNSIKSYVATWKIRRYCTQINVE
                     PSLEESMRYLNTKQLIIKKANYSLLTLTVTYYEKKAVAIWQLPPNSESQALMKELLPT
                     VKNELNQLDSRYMFTDFIRLPNSRLVISEATRRK"
     gene            6713..7948
                     /locus_tag="U1335_001511"
     CDS             6713..7948
                     /locus_tag="U1335_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000032131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein RepA"
                     /protein_id="HEM5231978.1"
                     /translation="MTKELDSQFKASSFCCTLNHIDKLFDLNDTSFDDPKYSDKTRKL
                     VKEFRANLDPNKSYSEEDMVNHLIYLWVNTKEDKRSAAANYEIGDNGVHHAHLILEAK
                     NQTRFSAIQKLYPTIHVELTRGSREQVIAYLNKSGKHEEKSHTTVVPMINHGIIEANQ
                     QGKRTDLETIQELLEAGLSPEQIMRQNLSYRKFSKMIKEHYYQMQVENAPLTKDMKVY
                     WHCGGAGSGKSWPQVQLKKTFGTDSVYVLSDYGTGGLDNYVGQPILFMDEFKGDIDYQ
                     TFLKLLDVYPNQVHARYSNIYALWDTVHISSIFTPYQIYTMLVPDERRKNDPIQQLYR
                     RIHYIVYHSKTIDNKYKSLTMTMNDYLTLVKNKLDFDNLIQNYITEDDASSDYTYTPN
                     KKATADNTSTDQSETDNDS"
BASE COUNT         2394 a         1518 c         1453 g         2633 t
ORIGIN      
        1 tatttgcatt ttacaagtaa tctgttataa taaaaataga aaaggagctg gattgccgtc
       61 cagctccaaa tgtagaaccg ttaaaaagac ggtggctcag tttagactat ttagaaataa
      121 ccgtgactgt ccaaagtttg acggttattt ctttttgtct tcatctttga agattttata
      181 gcacaaacca atcaaagcaa ctgtgaaacc accgaaactt aaaatcgtct gcacaacttc
      241 aaaagctgtc aaaagaacgc tactcctttc cgtcagattt tgatgaattg cccataggca
      301 tcacctcact ttcagaaaat tcagagccac cgtcttcact tttctactca tctattataa
      361 cacatttcat tcccaaaact tgttgaaata gcgtagtctt ttcaataagt tttgggaatc
      421 caaaaaaatc ttcctacaat atgtaagaag attttttcat tttagctacc tatccttgtt
      481 tgcgtcttct tgcacttgca agaccaagac tagataatac tgccacacct gcgagtgcca
      541 acaaacttgt ttgctcccct gtgtttggca aggtcttcgc acggtctaca cgtgagtaag
      601 taataccttg tggtgtgacg gtgacacctg cttgtggggt cgtcaccaca acttcaccct
      661 caatagctgg tttttcaaca gcagttggtg catcttttgg tactgcaaca attgttccgt
      721 ctggaagtgt tgcaatcaca ttgtcttttg ctttgtcttc aaggtctttg agtttgtcat
      781 actctgcttg aagttctgct agtttagctt tttcttcagc aagtttagca gtaacagttt
      841 caagtttgtt ttgtgctgtt tcagctttag cttgtgcttc agtaagagct gcttgttttt
      901 ctgcaagtgt tgcttttgct ttttcaaggc gtgctggtgc gttcatgtaa ccatcaagtt
      961 cttcagcaag tgcttttgct tcttcaacca agcggtcttt ttcagcaaga agagcgtctt
     1021 tgtctttgtt caagctatca agtgttgctt gttgtttagc aaggttagtc ttagctgttt
     1081 caagagtagt tgctttttca gtagcagtag cttgtgcttg agcaagatta gctttcgctg
     1141 tgtcaagtgc agctttctta tcagcaagat ttgctgagaa gttgtcaact gctttttgtg
     1201 catctacctt acgagtttca gcgttttgaa gagcaatagt tgcaagacgc aagttgtttt
     1261 cagcaacttg agtttgaagt ggtgttgcag tagcatcagc aagagttttt tcagcttgag
     1321 tcttagctgc tagtgcggtt gcgtattggt tacttgctgt tgtaagagct gtttttgcat
     1381 ttgttaatgc agtttgtgca gctacttggt cagctttggc tttcttaagg gcggcttgaa
     1441 ggcttgatgt tgatggtact tgatagatga tgttgttaac cttagaagga tctgtatctg
     1501 gaagatagtc taaatggcga tcattaacaa acactgtgtg tttattgatt tgtccaccga
     1561 tttgttccat actgattcca atttcaagac caataaattt ttcttcacta attggatttc
     1621 ctttacggtc tacttgtact tcataacccc caattaggtt gcctgtgtga ccccactctg
     1681 aatttgcgtc tttaaatgtt tcagctaaaa ttaagttagt aataatacgt tttgctgtat
     1741 tcatagtagc attttcatta acatttgcaa acaaggttcc aatgttttca ccataaccag
     1801 gtagactagg tttatgacca tgaaaggctt tattgtaggt acgatagtgt tccacatgga
     1861 ggtcagattg gcgttgagct tcatcaatag tacgtttaga aacaacaaca tagtcagtca
     1921 ttccagcttt ttcacgaaga gtattcataa tttgtgctgc aaacaagctg agttctagac
     1981 gttgttcata ggttagatta tttggatcaa atggttcatc atttggtgct agttccaatt
     2041 tataactgtt aaaaatttct gcacccattg cagttaattc tgaacttaat cgctcttttt
     2101 cggcttcaag ctcttttacc tcatcaggtg tatggtcttg agaatcaaac ataactttgt
     2161 tacgaacaat agtgtactca tttagtttat ttttgaattc ctcaatcgga cctgaaattg
     2221 taagagtatc cacatttttc aacgcatcag ttgcagcagt aacagcatca tttgctttag
     2281 caagtgcttc agttgcagat gctacattgt tttgtgtggc agtaacacgg cttgaagcag
     2341 tatcaaccgc atctgtttta acagagacat cagtggttgc tgcatcaatt gcttcttggc
     2401 gtttagtgtc agctttctta gcgtcttcaa cggcttgggt tgcagtatca acgttagctt
     2461 tagcatctgt aacagcttta cttgcgttat caaggttcgc ttgagcttcg gcaagtccag
     2521 ttcctgaaag tgcatcttgt gccgatttta catcagtttc agcagcagta acggcgctgt
     2581 tagcttggtc tttttctgct tgagcagtat cgaccgcaac ttgtgcgtca gcaactgtct
     2641 gtgtttgtga tgcgatttcg gcattgactt catctgtttc agtagcgtta gcagtttggt
     2701 ctgcaaggtt agctgtttgg tcagcttggt tagctgcaat gttttctggt gttgcatttg
     2761 ccaaattttc ttcggcatct ttgacagctt gttttgctgc gtcaacatct gtttgagcag
     2821 ttgtaacagc ttggtcagct gcgtctgcat cagcttgagc ttggctagct tcagcagcag
     2881 tagcatcaac aacagcttgt tgtgcgtcaa gagctggttt gacatcagct gatgttttag
     2941 gtgcttcgac agctgtagtt tcagttgcag aaacaacagt gtcagtattt gtttcaactg
     3001 ttggtgttac ttcctcagcg aatgctggta cagaagtagc accgattgct gttgcgattg
     3061 ccgcacctgt tgcgagagtt ttgattgatt ttttgttcat ggttttttct cctattatat
     3121 aaacaacctt ttgaagttgc ttttacatag attttaacat atataaacaa ctttgtaaag
     3181 ttgcttacaa ctttttaaga agttaatatt tgttgtcaaa agctgtaata ttggtatcgt
     3241 gaggtatatc atgaaacaat cattacgaac atttattggc aaacgaattc gccttttaag
     3301 gttgcaaaaa gggttaaccc aagaacaagt tgaagcaatg gcagacttag gtacaaacta
     3361 cgtctataaa ttggaacacc tagaaacaaa tataaaaatc aatacattag aaaaagtaat
     3421 ggaagctctt gattgtgata tagcatcatt ttttgacata acccctaaag atgataatcc
     3481 tcatattgca gatttcatta ctaatcttaa aagtattcct gaagctcaac aagaagaaat
     3541 tctctctgct tttaatacta tcatcaatca gttaaaacta aagtaaccgc taagatgcaa
     3601 aatcctagcg gttgttttta tttttcaaat atccgtcatt acctagcagc ctgtcttctg
     3661 cctcaacaat gtctagcggg cgggcaacac caatttctct aactgaacac tcatagtcag
     3721 caattttttc aacatcttca taaaacagat ctaaatcaaa ctcatatcca agtgccgcaa
     3781 ataaattgtt caacattgtt aaaactaatg tttctttcat ctgatttgca aggaaataag
     3841 ggccaagtct ctccataggt tcggataatt catatgttag cttttcagct ttagctctct
     3901 cttcttccaa tcgaattttt ttagctcttt ccttctcctt tcttttttgc agtgctttgc
     3961 tttttatctt gtcattatta taatcatcta taattttgtc gagtaattgt ttatcataga
     4021 attttggatt tgtacctaat tcagaaatat tttcataatc ttgtaaaact gcacgacttc
     4081 tttctggaga aagatagagg tttttagcta aataagagct tggataatat tttttcccct
     4141 tatattcttt acaatccgca ggcaatcttc ccatagttcc ctccaattta aacggctatt
     4201 tcaaaattca atcggttatt tcatttttta tcattatatc actttcaaat tagaacatca
     4261 agcaatcggt tatttctcaa acggttattt agacgatttt cgttgattta agcgtttata
     4321 ggtgatatga taaagtcata acaaaacagc gctgacttgt taaactgtcg atatataaca
     4381 acaatcaatt gttatcactc aagcagaaat gcttcaaata ttatattttt taggaggtgc
     4441 ccattatggt attttacaaa aaaacaaacg gctacagcag tagcctcgca caacaagttt
     4501 tatcagatga agtggtaaaa cttgcaggta aacaggtcga agaccaattt gaatttgtta
     4561 agacaggcga aactgttaat ggcaaagaaa agatgaaacg tacagaaaat gtacaagctc
     4621 atcacatcta tgtagcaaca gatagtcaga atccgttcaa aattaagttt cttccagaaa
     4681 acaagcccga cctaagcggg ttcgagattg gcgataccgt tacatttgaa ggtctagaag
     4741 ccttcgaaaa taattacggt caagtctatt ttcgcgcaac tggcatcaag aaaggtaagt
     4801 aactatgacg tttttggtta acaaagacca aaatcagcaa caaacatcag gggctaaaat
     4861 ccctgatgtc gctgaatttg gtaaagatag atattcttta gcacaattta ttttacgcaa
     4921 cttgaacaat gctcttgata tcaatgatga atcatcctat cttaattcct tcgacattaa
     4981 agttttaagt aatgatagtg gcatgttatt cattccaaat cttcctgtaa gttatcctat
     5041 taataatcaa ctttatttta atctatatgc aatttgtgca ggtattcttt atccctataa
     5101 gacgttatta cctcagaata acgcatattt tgttccttac gatactgata atccaaatca
     5161 agcacgtgca ttctttttcc catggctgga tggtattcct agtcgcttac aaatcaaaga
     5221 tattaaccgt ttcgtcaatg aacgtgtttc tgagaactgt attcccttaa tgtcaaatgg
     5281 ggtcaatgga attaacctgg acatgaataa cgtggtacat ttagctattt cgggagcgtc
     5341 aggttcaggt aaatcgagct ttgttcgata tcttatccta tgcttgaaaa agtttacaaa
     5401 ccaaataatc tgtatagacc caaaactttc tgatatttat attttgggga agaaattagg
     5461 tttagaagtt tttgctccca ctcaaggttc aaacttaaat agcttcatta ccgaagtgaa
     5521 tgaattattg gcacgtgtca ttgctaaaat ttttgagcgt caagagattc tgctaacaca
     5581 gcctaacaaa cattttgaac gcatttatgt ggtcattgat gaactgttag cattggtaca
     5641 aggaagctca aaacaggctc gtgaagcatt tgctcagtta cttggaacaa ttgcattact
     5701 cggtcgtcag actcaaatca gccttgtttt gctaagtcaa aggtttgatg caactgcttt
     5761 cggcggaaac acagctgttc gtgaacagct aaattgcatt tgtatcttgg gagaggttaa
     5821 cgcgaatacc tgccaatttc tattaccgaa cactgatgtt tcaaatattg ttgttcctgc
     5881 tggtatcggt actggtatta tcaaatttac agacagcaag catcaaaccc acattatgcc
     5941 actgttaaca ccgacttaca atattcgaaa ggacaaggtc tcatgaaaaa ttactttaat
     6001 aaatataatc ttatcaattt ttcaatcatc acgctattaa caactgcact tgttgaacga
     6061 tttgcttggt tcttaattgt taaaatgcat cttacatcat tttttgcagc cgtacttttc
     6121 attttaattc ttcgcttgat aataatagtc gcagtagctt tacttttctt tactgtcatt
     6181 attgagttgg gaaatcgtaa tgcagagttt gattatttca gcaatagcat caaatcttat
     6241 gttgcaactt ggaaaattag gcgatattgt acccaaatca atgttgagcc atcacttgaa
     6301 gaatccatgc gttacttgaa tacaaaacaa ctcatcataa aaaaagccaa ctactcactg
     6361 ctgacactaa ccgttacata ttacgaaaaa aaagctgttg ccatttggca actaccaccc
     6421 aatagtgaaa gtcaggctct aatgaaagaa ttactgccaa ctgttaaaaa tgagctaaat
     6481 caacttgata gtcgttatat gtttactgac tttatacgct tgccaaatag tcgcctcgtc
     6541 atatcagaag ccactaggcg caaataatgg tgcggtggct gctgctgaag gcaagcaagc
     6601 caaccagcac caaaacttga aacaatccat gtctaatggt ggtgtaaggc tagtattacc
     6661 cttacaccac ctaccagaca agacaaaaaa ttcaaatgga gaattattat aaatgactaa
     6721 agaacttgat tcacaattta aagcaagctc attctgttgt acattgaacc atattgataa
     6781 gttatttgat ttgaatgata caagctttga cgacccaaaa tattcagata aaacacgcaa
     6841 attagtcaaa gaatttcgtg ccaatctcga cccaaataaa tcttattcag aagaagacat
     6901 ggtcaaccat cttatatatt tatgggtaaa cactaaagaa gacaaacggt cagccgcagc
     6961 aaactatgaa attggagaca atggggtgca tcacgcccat ctgattttag aagccaaaaa
     7021 tcaaacacgc ttttcagcta tccaaaaact ttatcctact attcatgtgg aattaactcg
     7081 gggcagtcgt gagcaagtca ttgcatactt aaacaaaagt ggcaaacatg aagagaaatc
     7141 acatacaact gttgttccaa tgattaacca tggcattatt gaagctaatc agcaaggcaa
     7201 acgtaccgac ttagaaacta ttcaagagct tcttgaagct ggtcttagtc ctgaacagat
     7261 tatgcgtcaa aatctatctt atcgaaaatt ttctaagatg attaaagaac actactacca
     7321 aatgcaggta gaaaatgcac cactgactaa ggatatgaaa gtctattggc actgtggggg
     7381 ggccggcagt ggtaagagtt ggccacaggt tcaattgaaa aaaacatttg ggacagatag
     7441 cgtctatgtt ctatcagact acgggactgg tggcttagat aactatgtag gtcaacctat
     7501 attatttatg gatgaattta aaggagatat tgattatcaa acatttttga aactgcttga
     7561 cgtatatcca aaccaagttc atgcacgtta tagtaatatc tatgctcttt gggatactgt
     7621 tcatatctct agcatcttca cgccttatca aatttacaca atgttagtac ctgatgaaag
     7681 acgtaaaaat gatccgattc aacaactgta ccgtcgcatt cattacattg tataccacag
     7741 caaaactatt gataataaat acaaaagtct gacaatgaca atgaatgatt atctaacact
     7801 ggttaaaaat aagttagatt ttgataattt aattcagaac tatataactg aagacgatgc
     7861 atcatcagat tatacttata ctcctaataa aaaagctacc gccgacaaca cctcaaccga
     7921 ccaaagcgag actgataacg atagctaagc atatagatga gaggataaaa cttctctcac
     7981 acactattat aacaaatt
//
LOCUS       DASGAC010000098         7983 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.098, whole genome shotgun sequence.
ACCESSION   DASGAC010000098 DASGAC010000000
VERSION     DASGAC010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7983)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7983)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7983
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.098"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            26..733
                     /locus_tag="U1335_001512"
     CDS             26..733
                     /locus_tag="U1335_001512"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEM5231979.1"
                     /translation="MKTDLLYSGKAKDIYATADSDQIVAVYKDQATAFNGGKKEQITG
                     KGRLNNLISSLIFEKLNEAGVKTHFIKHLSDTEQLNKKVEIIPLEVVLRNVTAGSFSK
                     RFGVEEGIALSTPIVEFYYKKDELDDPFINDEHIAFLELASQDQIAYIKEETRRINGF
                     LKDLFAQIGLTLVDFKLEFGVDSSGQILLADEFSPDNCRLWDADGNHLDKDVFRRGLG
                     ELTEVYEVVLAKLQEVK"
     gene            746..4465
                     /locus_tag="U1335_001513"
     CDS             746..4465
                     /locus_tag="U1335_001513"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001042262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HEM5231980.1"
                     /translation="MAKRIFVEKKADFQIKAEALRKELTHNLQLTSLTSVRLVQVYDV
                     FNLEEGLLEQAIKHIFTEQVTDKVLSEAELGLEGAVYFAIEALPGQFDQRAASSQEAL
                     LLLGSRQEVRVNTGQLYILNGDVREEELAAIKNYLLNPVDSRFKDMDAPLVAQEFSVS
                     DTVIPSLDFFDNFGAEEFAAYKREAGLAMEVEDLLFIQDYFKSIGRVPTETELKVLDT
                     YWSDHCRHTTFETELKSIDFSASKFQKQLQATYDKYLAMRTELGRIDKPQTLMDMATI
                     FGRYERANGRLDDMEVSDEINACSVEIEVDVDGVKEPWFLMFKNETHNHPTEIEPFGG
                     AATCIGGAIRDPLSGRSYVYQAMRISGAGDITQPLTATRSGKLPQQIISKTAAHGYSS
                     YGNQIGLATTYVREYFHPGFVAKRMELGAVVGAAPKENVVHEKPVAGDVVILLGGKTG
                     RDGIGGATGSSKVQTVESVETAGAEVQKGNAIEERKIQRLFRNGDVTRLIKKSNDFGA
                     GGVCVAIGELADGLEIDLDKVPLKYAGLNGTEIAISESQERMSVVVRPHDVDTFIAAC
                     RQENIHAVVVAKVTEKPNLVMNWNGQTIVDLERSFLDTNGVRVVVDAKVVDSPVNLPE
                     TRRTSAETLQEDLKDLLSDLNHASQKGLQTIFDSSVGRSTVNHPLGGRHQLTPTESSV
                     QKLPVQHGVTTTASIMAQGYHPYLADWSPYHGAAYAVIEATARLVATGANWSKARFSY
                     QEYFQRMDKQAERFGQPVAALLGSIEAQIQLGLPSIGGKDSMSGTFEDLTVPPTLVAF
                     GVTTADSRKVLSPEFKAAGEYIYYLPGQILSEDIDFALMKSNFETFEKWQSDYVITAA
                     SAVKYGGVLESLALMSFGNQLGAEIELAELETSLTGQLGGFVFTSQEDIPDAVKIGQT
                     TTNFTLLVNSVNLAGQELQAAFEGKLEEVYPTEFEQATDLQDVPEITSSAVIQAKERV
                     EVPLVYIPVFPGTNSEYDSAKAFEQAGAKVNLVPFVTLDAESIDKSVDTMVDDIAKAN
                     ILFFAGGFSAADEPDGSAKFIVTILRNAKVRSAIDQFIEKGGLIIGICNGFQALVKSG
                     LLPYGNFEEAGESSPTLFYNDANQHVAKMVETRIANVNSPWLAGVQVGDIHAIPVSHG
                     EGKFVVTDEEFAVLRDNGQIFSQYVDFAGQPSMDSKYNPNGSSHAIEGITSRNGQIIG
                     KMGHSERYEDGLFQNIPGKKDQGLFVSAVRYFTGK"
     gene            4468..5922
                     /locus_tag="U1335_001514"
     CDS             4468..5922
                     /locus_tag="U1335_001514"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009908857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEM5231981.1"
                     /translation="MTYEVKSLNEECGVFGIWGHPQAAQVTYFGLHSLQHRGQEGAGI
                     LANDGGHLRRHRGTGLIAEVFKNPADLEALTGTAAIGHVRYATSGSASINNIQPFLFD
                     FADMQVGLAHNGNLTNAVSLKAELEKNGSIFSSSSDTEILMHLIRRSHNPDFMGKIKE
                     ALNTVKGGFAYLILLEDKLVAALDPNGFRPLSIGKMKNGAWVVASETCAFEVVGADWV
                     RDVEPGEIVVIDDSGIQYDSYTRDTQLAVCSMEYVYFARPDSVIHGINVHTARKNMGR
                     RLAQEFQREADIVVGVPNSSLSAAMGFAEESGLPNEMGLIKNQYTQRTFIQPTQELRE
                     QGVRMKLSAVSSVVKGKRVVMIDDSIVRGTTSRRIVQLLRDAGAKEVHVAIGSPELKY
                     PCFYGIDIQTRRELISANHTAEEVCEIIGADSLTYLSLEGMIEAIGIETDAPKGGLCV
                     AYFDGEFPTPLYDYEEEYLRSLEEKTSFYIENVK"
     gene            5978..7000
                     /locus_tag="U1335_001515"
     CDS             5978..7000
                     /locus_tag="U1335_001515"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009729529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEM5231982.1"
                     /translation="MTNKNAYAQSGVDVEAGYEVVERIKKHVARTERLGVMGALGGFG
                     GMFDLTKLDVKEPVLVSGTDGVGTKLMLAIQYDKHDTIGQDCVAMCVNDIIAAGAEPL
                     YFLDYIATGKNEPAKLEQVVAGVAEGCVQAGCGLIGGETAEMPGMYGEDDYDLAGFAV
                     GIAEKSQIIDGSKVKEGDILLGLASSGIHSNGYSLVRRVFADVSGDALLPELNGRALK
                     DVLLEPTRIYVQQVLPLVKAGLVNGIAHITGGGFIENIPRMFADNLAAEIEEDKIPVL
                     PIFTALEKYGKIKHEEMFEIFNMGIGLVLAVSPDKVDSVCQLVDEEVYTIGRVITKED
                     KSVVIK"
     gene            6997..7566
                     /gene="purN"
                     /locus_tag="U1335_001516"
     CDS             6997..7566
                     /gene="purN"
                     /locus_tag="U1335_001516"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEM5231983.1"
                     /translation="MKRIAVFASGKGSNFQVIAEQFEVAFVFSDRRNAYVLERAEKLG
                     VPTFAFELKEFADKQAYEEAIIQLLAQHQIDLVVLAGYMKIVGPTLLAQYEGRIINIH
                     PAYLPEFPGAHGIEDAWQAGVSESGVTVHWVDSGIDTGQIIKQVRVPRVADDTLETFE
                     ARIHEAEYQLYPAVLEELDVEKRKWKSIR"
     gene            7548..>7983
                     /locus_tag="U1335_001517"
     CDS             7548..>7983
                     /locus_tag="U1335_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231984.1"
                     /translation="MEKHQVKGYLLEIVLARLLKVNGYDLVATTSTDIVQQGNGLHVK
                     GRGGYHQFDSLGTFRITPPFVYPIRLFLEAKFHSKKIGIDRVRMGVGILQDVNTNYST
                     IQMTIAELELPKYNYNYAIFSTSGFTDDAQRLAIAHKIYLMDL"
BASE COUNT         2138 a         1650 c         2074 g         2121 t
ORIGIN      
        1 tattttatga aaggcgaaca ttttaatgaa aacagacctt ctctattcag gaaaagccaa
       61 agacatctac gctacggctg acagcgacca gattgttgca gtttacaagg accaggcaac
      121 ggcttttaat ggtggcaaga aagaacagat tactggcaag gggcgactta ataatctgat
      181 ttcctctttg atttttgaaa agttgaatga agcgggagtc aagacgcatt ttatcaagca
      241 cttgtcggat acggagcagt tgaataagaa ggtggagatt attcctctcg aggttgtttt
      301 gcgaaatgtg acagctgggt ctttctcaaa acgctttggg gtggaagaag ggattgcctt
      361 atctactcct atcgtggaat tttactataa aaaagatgag ttggacgatc cttttatcaa
      421 cgatgaacac attgcctttc tagaactggc tagtcaggac caaatcgcct atatcaagga
      481 agaaacacgt cgtatcaatg ggttcttgaa ggacttgttt gctcagattg ggctgacttt
      541 ggtggatttc aagctagaat ttggggttga ttcgtctggt cagattttat tggcggatga
      601 gttttctcct gataattgtc gtttgtggga tgcggatggc aaccatctcg acaaggatgt
      661 tttccgtcgg ggtctcgggg agttgaccga ggtttacgag gtcgtattgg caaagttaca
      721 agaagtgaaa taaggattgg aagatatggc gaagcggatt tttgttgaga agaaggcgga
      781 ttttcagatt aaggcggagg ctcttcgcaa ggagttgact cataatttac agttgacaag
      841 tttgacgagt gtacgtctgg tgcaggttta tgatgtcttc aatttggaag agggcttgct
      901 ggagcaggcc atcaagcaca tctttactga gcaggtgacg gacaaggtct tgtcggaagc
      961 ggaactaggt ttggaaggag ctgtttattt tgcgattgag gctcttcctg ggcagtttga
     1021 ccagcgggct gccagcagtc aggaggccct tctcttattg ggcagtcgtc aggaggtgcg
     1081 tgtcaataca ggtcagctct atatcttgaa tggcgatgtg cgggaagaag agttagctgc
     1141 tatcaagaat tatttgctga atcctgtgga ttcgcgattt aaggatatgg acgctccttt
     1201 ggtggctcag gagttttcgg tgtcagatac tgtcattcca agcttggact tttttgataa
     1261 ctttggggca gaggaatttg cggcttacaa gcgtgaggct ggcttggcta tggaagtgga
     1321 agacctactc ttcattcaag actatttcaa atcaatcggt cgagtgccaa ctgaaacaga
     1381 actcaaggtt ttggacacct attggagcga ccactgccgt catacgactt ttgaaacgga
     1441 actcaagtct attgactttt cagcctcaaa attccaaaag caattacagg cgacttatga
     1501 caagtacctg gcgatgcgga cagaattagg tcggatagac aaaccgcaga cgctcatgga
     1561 tatggcgacg atttttggtc gttatgagcg ggcaaatggt cgtctggatg acatggaagt
     1621 gtcagatgaa atcaatgcct gctcggtgga aattgaagtg gatgtggatg gcgtgaaaga
     1681 gccatggttc ctcatgttca agaatgaaac ccacaatcat cctactgaaa tcgagccttt
     1741 tggtggtgcc gcaacctgta tcggtggagc tattcgtgat cctttgtcag gtcgttccta
     1801 tgtttatcag gccatgcgaa tttcaggtgc gggtgatatt acccagcctc tgacggctac
     1861 tcgctcaggg aaattgccgc agcaaatcat ctccaaaaca gcggcacatg gttattcttc
     1921 atacggtaac caaatcggtt tggcgacaac ttacgtgcgt gagtatttcc acccaggctt
     1981 tgtcgctaaa cgcatggagc tgggtgccgt agtcggtgct gctcctaagg aaaatgtggt
     2041 ccatgaaaaa ccagtcgcag gcgatgtggt catcctactg ggaggcaaaa caggtcgcga
     2101 cggtatcggc ggggcaacag gctcgtccaa ggtacagaca gttgagtctg tggaaacggc
     2161 tggtgcagaa gtccaaaagg gaaatgcaat cgaagaacgt aaaatccaac gcttgttccg
     2221 taatggtgac gtgactcgct tgattaaaaa atccaatgac ttcggtgcag gcggtgtctg
     2281 cgtagctatt ggagaactgg cagacggtct tgaaatcgat ttggataagg ttccactcaa
     2341 gtatgcgggc ttgaatggaa cggaaatcgc catttctgaa tcgcaagagc ggatgagtgt
     2401 cgttgtccgt cctcacgatg tagatacctt catcgcagcc tgtcgtcagg aaaatatcca
     2461 tgcagttgtc gtagctaaag tgactgaaaa accaaacctc gttatgaatt ggaatggtca
     2521 aaccattgtt gatttggaac gttccttcct tgacaccaac ggtgtgcgcg tggtggtgga
     2581 tgctaaggtg gttgacagtc ctgtcaatct accagaaaca cgtagaactt ccgctgaaac
     2641 gctacaggag gacttgaaag accttctatc agatctcaac catgctagtc aaaaaggttt
     2701 gcagaccatt ttcgactcat ctgttggtcg ttcaaccgtc aatcacccac tcggaggtcg
     2761 tcaccagctg actccgacag aaagttcggt acagaaacta cctgtccaac acggtgtgac
     2821 gacgacggct tctatcatgg ctcagggcta tcatccttat ctggcagact ggtcacctta
     2881 ccacggagcg gcttatgcag tcatcgaagc gacagctcgc ttggtggcaa caggggctaa
     2941 ctggtctaag gctcgcttct cctatcaaga atatttccag cgaatggaca agcaagcaga
     3001 gcgttttggt cagccagtag cggcacttct gggctctatc gaggctcaga tccagcttgg
     3061 tttgccgtct atcggtggta aggactccat gtctggtacc tttgaggatt tgacagttcc
     3121 gccgaccctg gttgcctttg gtgtgaccac ggcagacagc cgcaaggttc tctcacctga
     3181 gttcaaggcg gctggcgagt acatttacta cttaccaggt cagattttat cagaagacat
     3241 tgattttgcc ttgatgaagt ctaattttga gacttttgaa aaatggcaga gcgattatgt
     3301 gattacggct gctagtgcag tcaagtacgg cggtgtctta gaaagtctag ccctcatgtc
     3361 ctttggtaac cagcttggtg cagaaatcga gttggcggag cttgaaacca gcttgacagg
     3421 gcagcttggc ggatttgtct tcacatcgca agaagacatt ccagatgctg tgaaaatcgg
     3481 tcaaaccact acaaacttta cactgcttgt caacagtgtc aacctagctg gacaggaatt
     3541 acaagctgcc tttgaaggta aactggaaga agtctatcca acggaatttg aacaggcaac
     3601 agacttacag gatgttcctg aaattacaag ttcagcggtt atacaagcca aggaaagagt
     3661 cgaagtaccg cttgtttaca tcccagtctt cccaggaacc aactcagaat acgactccgc
     3721 caaagccttt gaacaggctg gtgccaaggt caatcttgtt ccatttgtga ctttggatgc
     3781 ggaaagcatt gacaagtcag ttgacacaat ggttgacgac attgctaagg cgaatattct
     3841 attctttgca ggtggattct ccgctgcgga tgagccagac gggtctgcca agtttatcgt
     3901 taccatctta cgaaacgcca aggtccgctc tgctattgac caatttatcg aaaaaggtgg
     3961 tctcatcatc ggtatctgta atggcttcca ggcccttgtc aaatcgggct tgctgcctta
     4021 tggaaacttt gaggaggcgg gtgaaagcag tccgaccctc ttctacaatg atgccaacca
     4081 gcacgttgcc aaaatggtgg aaacgcggat tgccaatgtc aactctccgt ggttggcagg
     4141 tgtccaagtc ggcgacattc acgctatccc agtttcacac ggggaaggaa agtttgtcgt
     4201 gacggatgaa gaattcgctg tcttgcggga caatgggcag attttcagcc aatacgttga
     4261 ctttgctggt cagccaagta tggactctaa gtacaatcca aatggttcta gccatgccat
     4321 tgagggcatt accagccgca acggtcagat tatcgggaaa atggggcatt cggagcgtta
     4381 cgaggatggt cttttccaaa acattccagg caagaaagac caaggactct ttgtttcagc
     4441 agttcgctat tttacaggaa aataactatg acatacgaag ttaaatcact caacgaagaa
     4501 tgcggtgttt tcggcatttg gggacatccg caggctgctc aggtgaccta ttttggtctg
     4561 catagcttgc agcaccgtgg gcaagaaggg gcagggattt tagccaatga tggtgggcat
     4621 ttgcgtcgcc atcgcggaac aggcttgatt gcagaagtct tcaaaaatcc agcagattta
     4681 gaagccttga caggaacggc tgctattggt catgtccgtt atgcaacttc tggctctgct
     4741 tctatcaata atatccagcc cttcctattt gattttgcag atatgcaggt gggtttggca
     4801 cataatggga atttaaccaa cgcggtcagt ttgaaggctg aacttgaaaa aaatggttcc
     4861 attttctctt cttcttctga cactgaaatt ctcatgcact tgattcgccg cagtcacaat
     4921 ccagacttta tgggaaaaat caaggaagcc ctcaatactg ttaaaggggg ctttgcctac
     4981 ctgatcttgt tagaagataa attggttgca gctctagacc ctaatggttt ccgtccactt
     5041 tcaataggca aaatgaaaaa tggtgcctgg gtagttgcca gcgaaacttg tgcttttgaa
     5101 gtagtggggg ctgactgggt gcgagatgtg gagcctggtg aaattgtcgt cattgatgat
     5161 tcaggaattc aatatgatag ctatacaaga gatacgcaac tggctgtttg ctctatggag
     5221 tatgtctatt ttgctcgccc agattcggtt attcatggta tcaatgtcca tacagctaga
     5281 aaaaatatgg gtcgtcgttt agcccaggaa tttcaacggg aagcagacat tgttgttggt
     5341 gtgccaaact cctccctatc tgcggctatg ggatttgcag aggaatctgg tttgccaaat
     5401 gaaatggggc taattaaaaa ccaatatacc cagcggacct ttattcaacc aacccaggaa
     5461 ttgcgggagc agggtgtgcg catgaagttg tcagccgttt caagtgttgt caaaggcaag
     5521 cgtgtggtca tgattgacga ctctattgtt cgcggtacaa ctagccgtcg cattgtccag
     5581 cttcttcgtg atgcaggggc aaaagaagtc catgtggcta ttggaagtcc tgaactcaag
     5641 tacccttgtt tttatggtat tgacattcag acccgtcggg agttgatttc agccaaccac
     5701 accgctgagg aagtctgtga gattattggg gcagacagcc tgacctacct ttctcttgaa
     5761 gggatgattg aagccatcgg catcgaaacc gatgcgccaa aaggcgggct ctgtgtagcc
     5821 tactttgacg gagaatttcc aacgcctctc tatgactatg aggaagaata cctccgcagc
     5881 ctagaagaga aaacgagttt ctacattgaa aatgtcaagt aaagacagag gtgtcaacgt
     5941 tacttgacag acctgtaaac tgttgaaagg aatcaaaatg acaaataaaa atgcttatgc
     6001 ccaatcaggt gttgatgtcg aagctggcta tgaagtggtt gagcgaatta agaagcatgt
     6061 ggctcggaca gaacgtttgg gtgtgatggg agcccttggt ggctttggtg gtatgtttga
     6121 cctgaccaag ctggatgtca aagagccagt cttggtatct gggacagacg gagtcggcac
     6181 aaagctcatg ctggcaattc agtatgacaa gcatgatacg attggtcagg attgcgtggc
     6241 tatgtgtgtc aacgacatca tcgcagcagg tgcggagcca ctttacttcc tcgactacat
     6301 cgcgacagga aaaaatgagc cagccaagct ggagcaggtg gttgctggcg ttgcggaagg
     6361 ctgtgtccaa gctggttgtg gcttgattgg cggtgagacg gctgaaatgc caggcatgta
     6421 cggtgaggat gactatgatc tggctggctt tgctgtcggt attgcggaga agtctcagat
     6481 tatcgacggt agcaaggtca aggagggcga cattctcctc ggcctagctt ccagcggtat
     6541 tcactccaac ggctattccc ttgtccgacg cgtttttgca gatgtttctg gcgacgctct
     6601 gttgccagag ctcaatggca gagctctaaa ggatgtcctc ttagagccga cccgtatcta
     6661 tgtccagcag gtgttgcctc tggtaaaagc agggctggtc aacggcattg cccatatcac
     6721 aggcggtggc ttcatcgaaa atattccccg catgtttgcg gacaacctag cagctgaaat
     6781 tgaagaagat aagattccag tcctcccaat ctttacagcc cttgaaaaat acggaaagat
     6841 caaacatgaa gaaatgtttg aaatcttcaa tatgggaatc ggattggtcc tggcagtcag
     6901 tccagacaag gttgacagtg tctgtcaact agttgacgag gaagtttaca ctatcggccg
     6961 cgttatcact aaggaagaca agagtgtggt catcaaatga aacgaatagc agtgtttgca
     7021 tcaggcaagg gctccaattt ccaagtcatc gcagaacagt ttgaagtagc atttgtcttt
     7081 tcagaccgga gaaatgccta tgtcttggaa cgagctgaaa aactaggtgt accaaccttt
     7141 gcttttgaac taaaagagtt tgcggataag caggcctacg aagaagccat tatccaactc
     7201 ttagcccagc accagattga cttggtggtt ttggcaggtt atatgaagat tgtgggacca
     7261 actctgctgg ctcagtacga aggtcgtatc attaatatcc acccagccta cttgccggaa
     7321 tttccaggtg ctcatgggat tgaagacgct tggcaggctg gcgtgtcgga aagtggcgtg
     7381 acagtccatt gggttgacag cggcattgac acaggacaaa tcatcaaaca agtccgagta
     7441 ccaagagtgg ccgatgatac cttggaaacc tttgaagcaa gaatacatga agccgagtac
     7501 caactctatc cagcggtttt ggaggagttg gatgtggaga aaagaaaatg gaaaagcatc
     7561 aggtaaaagg atatttatta gagattgtac tagcaagact attaaaagtt aatgggtatg
     7621 acttagttgc aactacaagt actgatattg tacagcaagg aaatggatta catgtaaaag
     7681 gaaggggagg atatcatcaa tttgattcat taggaacatt tcgtataaca cctccttttg
     7741 tttatcctat ccgactattt ttagaagcta agtttcattc caaaaaaatt ggaattgata
     7801 gagttagaat gggtgtaggt atactacaag atgtgaacac taactattct acgattcaga
     7861 tgacaattgc agagttagag ttgcctaaat ataattataa ttatgctatt ttttcgactt
     7921 ctggatttac ggacgatgct caaagactgg ctatagctca caaaatttat ctaatggatt
     7981 tat
//
LOCUS       DASGAC010000099         7825 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.099, whole genome shotgun sequence.
ACCESSION   DASGAC010000099 DASGAC010000000
VERSION     DASGAC010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7825
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.099"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..2162
                     /locus_tag="U1335_001518"
     CDS             <1..2162
                     /locus_tag="U1335_001518"
                     /inference="COORDINATES: protein motif:HMM:NF037639.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231985.1"
                     /translation="ENESTKLEQGNTTQTGNSLTFRNLRPGTYVLKEVTAPTGYNPIQ
                     KIKLTISLDGQITIVEGPQDLLEGQAVNANNEIELVVKNRPFTDFSIEKVSNLDPTIN
                     LAGVQLQIKAKNNGPAPLFSDDNWHIQHYQATIDTANKALTWWTQSNDVGNAVFKLPQ
                     GTYTISELAAPAGYELLQPFDIIVGADGQVRLADGAPTNAEINTKDNRLNLKLTNIFK
                     PKLKIIKVDSRDENRRLANATFKLFGEDGRTQVGSDLVTGATGEIETPALTPGTYYLQ
                     ETQSPAGFQTNGTKYKLIIATDGTTTVENADDLIAVAPLSDDKVISITLKNNVKTYRL
                     KIKKRDYDNPTNGVSGARFALYPSEGPNADGSNMVQVLINGRMTALEGSSYSHLDNTI
                     DFPNIPPGEYVLRETQAPSGYTKIRDTRLRIGEDGRLTLLDADQALVSVETGQGDTLV
                     MVAKNIRTFNFQIKKVDSTNEATLLDNAQFSIYKTDVNWTKGDTALAQGLTSAGIYQT
                     NLEPGYYILKEDQAPSGYLLNQKEYRFQINHDGSILLHNPDETVSLSRADTNRLVVFT
                     MKNARTTSQFKLAKRSYRDSDQRLEATFELKESGNAQATAVVKTTTTIGDEVLFDNLP
                     VGKSYILKETVAPDGYQKIEKEIHIDIGADGAITIQDGGDLVSLDNTDPHLIIVKNLR
                     KGEYPKAGGVGIIPYIALGGVMMLVALAVELRRKNIL"
     gene            2201..4141
                     /locus_tag="U1335_001519"
     CDS             2201..4141
                     /locus_tag="U1335_001519"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012948.1,HMM:NF027869.1,HMM:TIGR04226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopeptide-forming domain-containing fimbrial
                     protein"
                     /protein_id="HEM5231986.1"
                     /translation="MKKITKLFSVLATLLTVFGTLVNLAPVAHAATQDTKVIVHKIVM
                     NETDFNKFTYTEDFTKYNGNTIDNLTDYFGGSAKEVAGVNFKVWQKVQATATDTKTGA
                     ELGISGDTDNYQLVTQYANGVPTTENGAEFTLGEGTYIFVEDKENSPYYNNQDGKELT
                     GMKAVPFKLELPQAKVDGTGYFNTTDALNVYPKNTEDKPEIDKTFADGSKTQKPVNIG
                     DRIDYKITTTVPKDAAYKTFAWEDTMVAGLDFTLGSLAITSTTGQDPTVTTWTKDTDY
                     SLVETKRGFMVKLNATGLAKLETAAKAGDVNFTLTYNATLNDSAAVDTGIPNQVKLIY
                     GNRPSDFSEPKSTTPVNGEIKVEKTWGEGTTQKDVVFSIYEEETGKFIKQVTLTAGTP
                     SVTVTGLENKKYLVIEETSVPGSLPTYSNDTQGTIKVENKKNPNPEPLEPEEPKVITY
                     GKRFVKTDDTTAATKLVGAKFVVKNATGEFLALKDQTTRTAQMSAYQSAEDAYVAAVN
                     QKKPQNEIETKKAARDAAYEAMNMQWTWVTSQSDAFTFVSSTDGKFEVKGLNAGTYQL
                     VETKAPDGYALLTSPINFEVGPGTWKDTSATAIEEHMQVKNKKVTIPQTGGIGTLVFT
                     VIGLSTMVFAFIAMKKRQSEEA"
     gene            4165..5019
                     /locus_tag="U1335_001520"
     CDS             4165..5019
                     /locus_tag="U1335_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5231987.1"
                     /translation="MRRIRQLVCCFIAIICVLSLPSLSLQAQDSFDVQVHIPLPDGID
                     ASQVSTGLEAWYIATEEPASSERLADTLYQKSRSELNQLYGEPISSQDLTSEGQATFQ
                     GLTKGWYYVRQVGTPTSLEVVPFLMKVDGSVARIEAKVRRPSKAKGSKPFLKVSTSTA
                     PLSGAEFVVLEEVNGELKEVIVDGFPYHVTSGANGQFVVGPLPYGTYYLKEVKAPAGY
                     ILAQDTIPFEITSDSHVSEIVKIKNKPVTPPGIEIPYTGNAVVIAVLSLGIILFLLGY
                     RLVTYTKR"
     gene            5173..6084
                     /locus_tag="U1335_001521"
     CDS             5173..6084
                     /locus_tag="U1335_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class C sortase"
                     /protein_id="HEM5231988.1"
                     /translation="MKKKEVQVVNQKKSGKPKKKKKKSNLPFYLVFLIGMGILLYPHV
                     SNFYYRYEAGQLTESFDQEKKNLTPKEVQERIDLAHAFNESLNNIIAEDPYTKSRHEA
                     GRAEYARMLELHEKMGYVEIPKIDAKIPIYAGTAETVLQKGVGHLEGTSLPVGGSDTH
                     TVLTAHTGLPKARLFTDLTKVEIGDTFYIHNISETLAYEVDQILVVEPTQFDELLVKP
                     GQDYATLLTCTPYMVNTHRLLVRGHRVPYVAEDYRKAVENAEKRILIRYLLYALGMLI
                     IILLIFLLTKRRKKKKQVKSGEEAYTA"
     gene            6062..6922
                     /locus_tag="U1335_001522"
     CDS             6062..6922
                     /locus_tag="U1335_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class C sortase"
                     /protein_id="HEM5231989.1"
                     /translation="MKKRIQHKKGLSKQTILLKLIFVFGLLITVYPLISQFYYRYESD
                     REVESFYEQAQQLPSEEVSKRLEKARAYNQTLDPSKMQDPYSEEEKAGIAEYARMLEV
                     KEKIGFVEIPKINERIAIYAGTTEDVLQKGAGHLEGSSLPVGGESTHTVISAHRGLPN
                     ASLFTNLDRLKIGDQFYIHNIAETLAYEVDQILVVEPSDFDPVMVQSGEDYATLLTCT
                     PYMINSHRLLVRGHRVPYEPKVAAKQKPIFFLDMLSLSYLIAFLLMLLIFGFLYLRRK
                     RKQQKVRGRT"
     gene            6919..7779
                     /locus_tag="U1335_001523"
     CDS             6919..7779
                     /locus_tag="U1335_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class C sortase"
                     /protein_id="HEM5231990.1"
                     /translation="MKKIGYILMLIGLLMPLILLTNMSVHEFQTYRHYQSYQSRSTSF
                     SAEQKAAIDTYEEQINSGDIPTIDPFAEKNSSDSHSVVVPNLEDGVIGYLSIPSIEIR
                     QPIYIGATSQHLNDGVASIIGTDLPVGGMGRRSVIAGHRSWYTDLRFFRLTELKEGDK
                     IFIEIGGTTLTYLVKNTEVIKATDWQKLLPVENQDMLTLLTCDPLVPPFDYRLLVNAY
                     RQPDVAEGDVQSKQTSQEEMKQYQQHSFSFVFYITIFGWLLLCYILYRFVTLLTNTHR
                     KSKSDVVDLI"
BASE COUNT         2495 a         1512 c         1705 g         2113 t
ORIGIN      
        1 atgagaatga gtctactaag ttagagcaag gcaataccac gcagacaggt aacagcctta
       61 ctttccgcaa tttgcgacct ggcacttacg tcctcaaaga ggtcacagcc ccaacaggct
      121 acaatccgat ccagaaaatc aaattgacca tcagtctaga tggacaaatt acgattgtgg
      181 aaggaccaca agacttgttg gaaggtcaag ctgtgaatgc caataacgag atagaacttg
      241 tcgtcaagaa cagaccgttt acagatttca gtatcgaaaa ggttagcaat ctagatccga
      301 cgatcaattt ggcaggagtt cagctgcaaa tcaaggcaaa aaataatgga ccagctccgc
      361 tatttagcga tgataattgg catatccaac attatcaagc aacgattgat accgcaaaca
      421 aagccttgac gtggtggacc caatccaatg acgttggcaa cgctgtcttt aaacttcctc
      481 agggaacgta tacgattagt gagttagctg caccagctgg ttacgaattg cttcaaccgt
      541 ttgatattat cgttggagca gatggtcaag ttcggttagc agacggcgca ccgaccaatg
      601 cggagattaa taccaaagat aacaggctca acctcaaatt gaccaacatc ttcaaaccga
      661 aactgaagat tatcaaggtt gatagcaggg atgagaaccg cagacttgca aatgcaacct
      721 tcaaactctt tggtgaggat ggacgcacgc aggttggaag tgacttggtg acaggcgcta
      781 ctggagagat agaaactcca gccttgacac cgggtaccta ctatctacaa gaaacccagt
      841 ccccagcagg cttccagaca aatggaacca agtacaaact aattatcgct acggatggga
      901 ctacaacagt agaaaatgcc gacgacctta ttgctgtcgc accactttct gatgataaag
      961 tcatttcaat cacactgaag aacaatgtga agacctatcg cttgaagatt aagaagcgcg
     1021 actatgataa tccaactaac ggagtatctg gtgctcgatt tgctctctat ccatctgagg
     1081 gaccaaacgc agatggtagc aacatggtgc aagtgctcat caacggtcgt atgacagccc
     1141 ttgagggtag tagctactct cacttggata acacaattga ttttccaaat attccacctg
     1201 gagaatacgt ccttagagag acacaagctc catcaggcta cacaaaaatc agagatacgc
     1261 gccttcggat cggggaagac ggacgcttga cgctccttga tgcagatcag gctcttgtat
     1321 ccgttgagac cgggcagggg gatacgcttg tcatggttgc taaaaacatt cgtactttta
     1381 acttccaaat caaaaaagtg gatagtacaa atgaggcgac tctccttgat aatgctcaat
     1441 tctcaatcta taagacagat gttaactgga caaaaggaga cacagcctta gctcagggtc
     1501 tgacaagtgc tggtatctat cagacgaatc ttgagcctgg ctattatatc ctaaaagaag
     1561 accaggctcc ttccggttat ctcctcaatc agaaggaata ccgtttccag attaaccacg
     1621 atggctctat ccttcttcat aatccagacg agacggtatc attgtctcga gcagacacga
     1681 atcgtcttgt cgtctttact atgaaaaatg cccgaacaac ctctcagttc aagttggcaa
     1741 aacgctcgta tcgtgattca gatcagcgtc tagaagcgac atttgaattg aaagaaagtg
     1801 ggaatgcaca agcgacagca gttgttaaga caacaacgac aataggagat gaagttctct
     1861 ttgacaattt gccagtaggg aaatcgtaca ttttgaaaga gacggtagca ccagacggct
     1921 atcaaaagat tgaaaaagaa atccatattg atataggcgc agatggtgcc atcactatcc
     1981 aagatggagg cgacctcgtt agcctagaca atacggatcc tcacctgatt atcgtgaaaa
     2041 acctccgcaa aggagaatat ccgaaagcgg gtggtgtagg gattattcct tatattgcat
     2101 tagggggggt gatgatgtta gtagctttag ccgttgagtt acgtcggaaa aacattctat
     2161 aatacctaat gcacaaaaga ttaaaaatag gagaacattc atgaaaaaaa taacgaaact
     2221 attttcagtg cttgccacgc tattgacagt gtttggcacg ctggtaaatc ttgccccagt
     2281 agctcatgca gctactcaag atacaaaagt catcgttcac aaaatcgtta tgaacgaaac
     2341 agactttaac aagtttacat atactgaaga ttttaccaaa tacaatggta atacaattga
     2401 taacttgaca gattatttcg gtggatctgc aaaagaagtt gctggagtca actttaaagt
     2461 atggcaaaaa gtacaagcaa cagctacaga tacaaagaca ggtgctgagc ttggtatttc
     2521 tggcgatact gataactatc agcttgttac acaatatgct aatggtgttc caacaacaga
     2581 aaatggtgca gaattcactc ttggtgaggg aacttacatc ttcgttgaag acaaagaaaa
     2641 ctcaccatat tacaacaacc aagatggtaa agagttgact ggtatgaaag ctgtaccatt
     2701 caaacttgaa ttgccacaag ctaaagttga cggtactggc tacttcaata ctactgatgc
     2761 tttgaacgtt tatccaaaga acactgaaga taaacctgaa atcgacaaaa catttgcaga
     2821 tggttcaaaa actcaaaaac cagtaaacat tggcgatcgt atcgattata agattacaac
     2881 aactgttcca aaggatgcag cctacaaaac atttgcttgg gaagatacca tggttgcagg
     2941 tcttgacttt acactaggtt cattggcaat cacttccact actggacaag atccaactgt
     3001 tactacttgg acaaaagata ctgactatag cttggttgaa accaaacgtg gcttcatggt
     3061 taagttgaat gcgactggtc ttgctaaatt ggaaactgct gccaaagcag gtgatgtaaa
     3121 cttcactttg acatacaacg caacattgaa tgattctgct gctgttgata caggtatccc
     3181 taaccaagtt aaattgattt atggtaaccg tccaagcgac ttctcagaac caaaatcaac
     3241 aacaccggta aatggtgaaa tcaaagttga aaaaacttgg ggtgaaggaa caactcaaaa
     3301 agatgttgta tttagtatct atgaggaaga aactggtaag tttattaaac aagttaccct
     3361 tacagcagga actccatcag ttacagtaac tggtcttgaa aataaaaaat accttgtcat
     3421 cgaggaaact agcgttccag gctcacttcc tacctactca aatgatacac aaggtactat
     3481 caaagtagaa aacaaaaaga atccgaaccc agaaccactt gagccagaag agccaaaagt
     3541 tatcacttat ggtaaacgtt ttgtgaagac tgatgataca acagctgcaa caaaacttgt
     3601 tggtgcaaaa ttcgttgtaa aaaatgcaac cggtgaattc cttgcattga aagatcaaac
     3661 aactcgaaca gctcaaatgt ctgcttatca aagtgcagaa gatgcttatg tagcagctgt
     3721 gaatcaaaag aaacctcaaa atgaaattga gactaaaaaa gcggctcgcg atgctgctta
     3781 tgaagcgatg aacatgcaat ggacttgggt tacaagtcaa tcagatgcct tcacatttgt
     3841 atcatcaaca gatggtaagt ttgaagtaaa aggtcttaat gctggtactt accaacttgt
     3901 cgaaacaaaa gctccagatg gatacgcact tcttacttca ccaatcaatt ttgaagtagg
     3961 tcctggtact tggaaagata cttcagcgac tgcaattgaa gagcacatgc aagtgaaaaa
     4021 caaaaaagta acaatcccac aaactggtgg cattggtacc cttgtcttca cagttattgg
     4081 tttgagtaca atggtatttg cattcatcgc tatgaaaaaa cgccaatctg aagaggcata
     4141 atatccgttg aaaaggaggg acagatgaga cgaatcagac agttagtatg ttgtttcata
     4201 gctattattt gtgtattgtc actgccctcg ctttcactcc aagcacaaga ttcctttgat
     4261 gttcaggttc atattccgct tcctgatggg atagatgcca gtcaagtttc gacaggcttg
     4321 gaggcttggt atatcgctac agaagagcca gcctcttctg aacggttggc agatacttta
     4381 tatcaaaaaa gtcggtccga gttaaaccaa ctctacggag agccgatttc ctctcaagac
     4441 cttacttcag aaggtcaggc cacttttcag ggcttgacga aagggtggta ttatgtccga
     4501 caagtaggaa ctcctacgag tctcgaggtt gtcccattct tgatgaaagt tgatggcagt
     4561 gttgcgcgga ttgaggctaa ggtaagaagg cctagcaaag caaaaggaag taagccattt
     4621 ctcaaggtat ctacaagtac tgccccctta tctggtgcag agtttgtagt tcttgaggaa
     4681 gtgaacggag aattgaagga agtgatagtc gacggctttc cctatcatgt tacttctgga
     4741 gcaaacggtc agtttgttgt aggacctctt ccctatggta cttattatct gaaagaggtc
     4801 aaggctcctg caggctatat tctagcccaa gatacaattc cttttgaaat tacttcggat
     4861 tcacatgtgt ctgaaattgt taaaatcaag aacaaacccg tcacacctcc cggtattgaa
     4921 atcccatata cagggaatgc ggtggtcata gcggttttat cgctaggcat tattctcttc
     4981 ttgctaggct atcgtttggt aacctatacg aaacgataat gcttgacaga ctacgaataa
     5041 aggaaaaatc tcattgtcag gttgaatctg tggcgatggg atttttctat tttagaatcg
     5101 gattgtggta taatagagga tatttggaga aattttcaac tccgcaatac gatagaatat
     5161 aatggaaaaa tgatgaagaa aaaagaagtt caagttgtaa accaaaagaa atcaggtaaa
     5221 cctaaaaaga aaaaaaagaa gagcaacctt cctttttact tggtttttct gattgggatg
     5281 gggattttac tctatcctca tgtatcaaat ttttattatc gctatgaagc tggtcagttg
     5341 acagagtctt tcgatcagga gaagaagaat ttaacaccta aagaggttca agagcgaatt
     5401 gatttagctc atgctttcaa cgagagttta aacaatatca ttgctgaaga tccttatact
     5461 aagtcacgtc acgaagctgg gcgggcagag tatgcgagga tgttggaatt gcatgagaaa
     5521 atgggctatg ttgaaattcc taaaattgat gccaagattc cgatttatgc tggaacagcc
     5581 gagacagttt tgcaaaaggg agttgggcat ctggaaggga catctttgcc ggtcggggga
     5641 agtgataccc atacagtctt gacagctcat accggtttgc caaaggcgcg tttgttcaca
     5701 gatttgacca aggttgagat tggggatact ttttatatcc acaatatttc agaaaccttg
     5761 gcctatgagg tggatcagat tttagttgtg gaaccgacac agtttgacga gcttttggta
     5821 aagcctggac aggattatgc aacgttatta acttgtacac cttatatggt aaacacgcat
     5881 cgtttattag tgcgtgggca tcgtgttcct tatgttgctg aagattatcg taaagcagtt
     5941 gaaaatgctg aaaagcgtat tcttattcgc tatcttttgt atgcattagg aatgttgatt
     6001 atcattttat tgattttcct attgacaaaa aggcggaaaa agaagaaaca ggtgaagagt
     6061 ggtgaagaag cgtatacagc ataaaaaagg attgtccaaa caaaccatac ttttaaaact
     6121 gatatttgtc tttggtttgc tgattacggt atatccgttg atttctcaat tttattatcg
     6181 atatgagtca gaccgtgaag tagaatcttt ttatgagcaa gcacaacagc ttccgagcga
     6241 agaggtttcc aagcggttag agaaggcacg ggcgtataat cagaccttgg atccaagcaa
     6301 aatgcaagat ccttactcag aagaggaaaa ggctgggatt gcagaatatg cacgcatgct
     6361 tgaggtgaag gaaaaaattg gttttgtaga aattccaaaa atcaatgagc ggattgccat
     6421 ttatgcaggg acaaccgaag atgtattaca aaaaggagct ggacatttag aggggtcgtc
     6481 attgccggtt gggggagaaa gcactcatac agtcatttca gcccatcgtg gtttaccgaa
     6541 tgcctccttg tttaccaatc tcgatcgctt aaaaattggt gatcaattct atatccacaa
     6601 tatagcagaa accttagcct atgaggtgga tcagatttta gttgttgaac cgagtgactt
     6661 cgacccagtc atggttcaat ccggagaaga ctacgcgacc ttattgacct gcactccgta
     6721 tatgattaac agccatcgtt tattagtgcg tgggcatcgt gttccttatg agccgaaagt
     6781 tgcagctaag caaaagccga tattcttttt agatatgttg agtctttcct atttaattgc
     6841 tttcctgctg atgctgttga tttttgggtt tttgtacctt cgacgtaaga gaaagcagca
     6901 gaaggtgaga ggaagaacat gaaaaaaata ggctacattc tcatgctgat tggtttatta
     6961 atgccattaa tcttactgac aaatatgtct gtgcatgagt ttcaaactta tcgacactat
     7021 cagtcctacc aaagtcgttc aacatcattc tcagcagagc aaaaagcggc aattgatact
     7081 tatgaagaac aaatcaatag cggagatatc ccaacaattg acccttttgc agaaaagaat
     7141 agttcggata gtcattctgt tgttgttcct aatttggaag acggtgtgat tggttatcta
     7201 agcattccaa gtattgaaat tcgccagcca atttatatcg gagcgactag ccagcattta
     7261 aatgatgggg tggcttctat tattggaaca gatttacctg ttggtggtat ggggcgccga
     7321 agtgtcattg caggtcatcg tagttggtat acagatcttc gttttttccg tttaacggag
     7381 ctaaaagaag gagataagat ttttattgaa atcggtggga caacactgac atatttggtc
     7441 aaaaatacag aagtgataaa ggcgaccgat tggcaaaaat tattgcctgt tgaaaatcaa
     7501 gatatgttaa cgctgttgac gtgtgatccg ttagttcctc cttttgacta tcgcttgttg
     7561 gttaacgcct atcgtcagcc ggatgtagct gagggagatg ttcaatcaaa acagacaagt
     7621 caagaagaaa tgaagcagta ccaacaacac tcattcagct tcgtctttta tataacgata
     7681 tttggctggc tcttattatg ctatattctt tatcgttttg tcaccttatt gactaatact
     7741 catcgaaaat caaaatcaga tgttgttgac ttgatttgat gagtgaaagg ctccagtgga
     7801 gcctcagatt gaagaaaaag tccat
//
LOCUS       DASGAC010000100         7705 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.100, whole genome shotgun sequence.
ACCESSION   DASGAC010000100 DASGAC010000000
VERSION     DASGAC010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7705
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.100"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(64..636)
                     /locus_tag="U1335_001524"
     CDS             complement(64..636)
                     /locus_tag="U1335_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012972574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEM5231991.1"
                     /translation="MRVELGAVASYGNQKISTGDLSPKSYIGVDNLLQNRAGKLDATY
                     LPEMVKVNIYEEGNILIGNIRPYLKKIWFATNSGGASPDVLVVQNQVKDCLVNRYLYH
                     ILANDRFFEFDMQNAKGSKMPRGDKGAVLHYQFILPTFSDQFRIVAILDKFDELTTSI
                     SHGLPKEIELRQKQYEYFRDSLLNFPNKYE"
     gene            complement(662..1855)
                     /locus_tag="U1335_001525"
     CDS             complement(662..1855)
                     /locus_tag="U1335_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004219765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEM5231992.1"
                     /translation="MNHIEKMLQDYCPNGVEWKELGEVCVVNKGKQLNKTFLVDDGQY
                     PAYNGGKTYSGRTDSYNVTENTIIISQGGASAGFVNFVTTKFWANAHCYYLLPDITRV
                     NNRYLYHFLKMKQSYLMDFQHGAGIPALKSDKITKMPLPLPPLKIQEEIVQILDKFTE
                     YVTELTAELTAELTAELTAELTLRQKQYNYFRDYLLNFDSDSSGGANNKVYQVEWKTL
                     GDIAKLKNGKDWKSLSVGDVPVYGSGGAMGEFVSEYAYNKPTVLIPRKGSISNLFYLE
                     KPFWNVDTIYYTEIDDSQVVPRYLYYYLTTIDLESMATNPTRPSLTQAILDKIPIPVP
                     SFPIQQRIVQVLDNFDVVCNDLSIGLPKEIELRQKQYDYFREKLLTFTAEGVYTDSTV
                     QTRPD"
     gene            complement(1997..3004)
                     /locus_tag="U1335_001526"
     CDS             complement(1997..3004)
                     /locus_tag="U1335_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019777543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HEM5231993.1"
                     /translation="MTNDIIIYTTDDGKASIELHLDNGTVWLTQLELAELFQTSKQNI
                     SKHIKAIFGDGELDEKVVVNYQLTTTQHGAMAGKTQSRKTAYYNLDMILAIGYRVRSP
                     RGVQFRNYASTVLKEYLIKGFAMDDDRLKNLGGGSYFKELLDRIRDIRSSEKVFYRQI
                     LDLFATSSDYNARSSEAQQFFATVQNKLHYAIHHHTASELIYTRVDSEKEFMGLTTFK
                     GELPTLLEARVAKNYLTEQELQGLNQLVSGYLDFAERQAQRQIVMTMADWIQHMDRIL
                     LATGEDLLTHAGTISREQMTEKVSQEYRKYKVKTLSQVEKDYLAHIKHLEKTAQEGEK
                     K"
     gene            complement(2994..4550)
                     /locus_tag="U1335_001527"
     CDS             complement(2994..4550)
                     /locus_tag="U1335_001527"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002961410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HEM5231994.1"
                     /translation="MSEQAQRQELHRKIWAIADKVRGAVDGWDFKQYVLGILFYRFIS
                     ENFKNYIEGGDPDVDYANFPEGQITDVIKDDAVKTKGYFIYPSQLFSNVVKQARGNEN
                     LNTELRKIFDAIEDSAIGYDSEHDIKGLFDDVDTRSNRLGNSVAERNQRLVDILEEIA
                     NLDFGDFEDNKIDLFGDAYEFLISNYASNAGKSGGEFFTPQSVSKLLAKIVMLGKDEK
                     NKINKIYDPACGSGSLLLQAKKQFTEHIIEDGFYGQEINMTTYNLARMNMFLHNINYD
                     KFSIERGNTLLDPKHGNDKPFDAIVSNPPYSIKWIGSDDPTLINDDRFAPAGILAPKS
                     KADFAFIMHSLSYLLSKGRAAIVTFPGIFYRGGAEQKIRKYLVDGNFVEAVIQLPDNL
                     FFGTSIATCILVLAKNKNTTDTLFIDASREFKKETNNNILTEDNIQNILDGFDKGEDK
                     EYFVSVASHEKIVENDYNLSVSNYVEKEDTREKIDIVQLNKDIAETVKNIDRLRAEIG
                     KIVEELSHDQ"
     gene            complement(5013..7664)
                     /gene="adhE"
                     /locus_tag="U1335_001528"
                     /gene_synonym="adhC"
     CDS             complement(5013..7664)
                     /gene="adhE"
                     /locus_tag="U1335_001528"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000763984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HEM5231995.1"
                     /translation="MADKKVVSPEEKLAEARKHVDELVQKGLVALDEFRKLGQEEVDY
                     IVAKASVAALDKHGELAMHAFEETKRGVFEDKATKNLFACEHVVNNMRHTKTVGVIEE
                     DEVTGLTLIAEPVGVICGITPTTNPTSTAIFKSLIALKTRNPIVFAFHPSAQESSAHA
                     ARVVYEAAVAAGAPENCIQWVTKPSMEATSELMKHDGIATILATGGNAMVRAAYSCGK
                     PALGVGAGNVPAYIEKSANIRQAAHDIVMSKSFDNGMVCASEQAVIIDKEVYDEFVAE
                     FKSYKTYFVNKKEKALLEEYCFGVKANSKNCAEGKLNADIVGRPAAWIAEQAGFSVPE
                     GTNILAAEVTEIGEKEPLTREKLSPVIAVLKVEGREEGLEAARQMVEFHGLGHSAAIH
                     TEDAELAKEFGTIVRAIRVIWNSPSTFGGIGDVYNAFLPSLTLGCGSYGRNSISDNVS
                     AMNLLNIKKVGRRRNNMQWFKVPSKTYFERDSIQYLQKCRDVERVMIVTDHAMVELGF
                     LDRIIEQLDLRRNKVVYQIFSDVEPDPDITTVYKGTELMRTFKPDTIIALGGGSPMDA
                     AKVMWLFYEQPTVDFHDLVQKFMDIRKRAFKFPELGKKSKFIAIPTTSGTGSEVTPFA
                     VISDKANNRKYPIADYSLTPTVAIVDPALVLTVPAHVTADTGMDVLTHATEAYVSTVA
                     NDFTDGLALQAIKLVFENLESSVKNADFVSREKMHNASTMAGMAFANAFLGISHSMAH
                     KIGGRFHTVHGRTNAILLPYVIRYNGTRPAKTATWPKYNYYKADEKYQDIARLLGLPC
                     STPEEAVAAYAQAVYDLGERIGIQMNLKAQGIDEKELKEHSRELALLAYEDQCTPANP
                     RLAMVDHMQEIIEDAYYGYKERPGRIK"
BASE COUNT         2131 a         1732 c         1471 g         2371 t
ORIGIN      
        1 tcaatatcct ctcaaatcaa aaagaattgc agttgaacca caattctttg tttctcatcc
       61 tatttattcg tatttgttgg gaaaattgag taagctatct ctaaaatact catactgctt
      121 ctgacgcaac tcaatttcct ttggcaaacc gtgagaaatc gaggtcgtca actcatcaaa
      181 tttgtcgagg atagcaacga tacggaattg gtcagagaat gtcggcaaaa taaattgata
      241 gtgcaaaacg gctcccttat ctccacgagg cattttcgat cctttagcat tctgcatatc
      301 aaattcaaaa aatctatcat tagccaaaat atgataaaga tagcggttta ccagacagtc
      361 tttcacttgg ttttggacaa ccaaaacatc tggacttgct ccacctgaat ttgtcgcaaa
      421 ccaaatcttc ttcaaatatg gtctaatatt gccaatcaga atatttcctt cctcgtaaat
      481 attaactttt accatttcag gaagataagt tgcatccagt tttcctgctc tattttgcaa
      541 aagattgtct acaccaatat aactcttagg agataagtcg ccagttgata ttttttgatt
      601 gccgtagctc gccacagccc ccaactctac ccgtatcgga ccaaagaccc agtttaagag
      661 cctaatcagg tcttgtctgt actgtactgt cagtgtacac gccttcggcg gtgaatgtca
      721 agagtttttc tctaaaatag tcatattgtt tttgacgtag ctcaatctcc ttgggcagtc
      781 cgatactaag gtcgttacaa actacatcga agttatcaag aacttggacg atgcgttgtt
      841 ggatagggaa agaaggaacg gggatgggga ttttatccag aatagcttgg gtcaaacttg
      901 gtcttgttgg atttgttgcc atactctcca aatcaatggt agttaagtaa taatataaat
      961 atcttggcac aacctgactg tcgtcaattt cagtatagta aatcgtatcg acattccaaa
     1021 aaggtttttc gagataaaat agattagata tcgacccttt tctgggaatt aagacagtcg
     1081 gtttattata cgcatattct gagacgaact ctcccatcgc accaccacta ccatagaccg
     1141 gaacatcacc aacagaaaga cttttccaat cttttccatt tttcaatttt gcaatatccc
     1201 ccagcgtctt ccattccacc tgataaactt tattgttcgc cccccccgaa ctatcactat
     1261 caaagttcaa caaataatct ctaaagtaat tatactgctt ctgtcggagg gtcaattccg
     1321 cggtcaattc cgcggtcaat tccgcggtca attccgcggt caattctgta acatattccg
     1381 tgaatttgtc aagtatttgc actatttctt cttgaatttt taggggaggt aatggaagag
     1441 gcatttttgt gattttatca ctttttaaag ctggaatacc tgcaccatgt tggaaatcca
     1501 ttaaataaga ttgtttcatt tttaaaaagt ggtacaaata tctattatta actcgtgtaa
     1561 tatctggcaa taaataatag caatgtgcat ttgcccaaaa cttcgttgtc acaaagttaa
     1621 caaatcctgc cgaagctcct ccctggctta taattattgt gttctccgtt acattataac
     1681 tatccgttct accagaatag gtctttcccc cattataagc aggatactga ccgtcatcaa
     1741 ctaagaaagt cttatttaat tgttttccct tattaacaac acaaacctcc cccaactctt
     1801 tccactcaac tccatttgga cagtaatctt gtagcatctt ttcgatatgg ttcatactag
     1861 catcctttca ttcgcccact ttgtcgttgc aaggaggcaa agttatgaat ttgccttatt
     1921 tcccacctca aacagtcact cccctgactg tttgagccat tagggcagag gtcagccaac
     1981 atttcttcta tttttgtcat tttttctccc cctcttgagc tgttttttct aggtgtttga
     2041 tgtgagctag gtagtctttt tcaacttgac tgagggtctt gactttatat tttcggtact
     2101 cttgactgac tttttccgtc atctgctcgc gggatatagt tcctgcatgg gtcaggaggt
     2161 cctcacccgt tgccagtaaa atccgatcca tgtgctggat ccagtctgcc atggtcatga
     2221 caatctgacg ctgggcctgc ctctcggcaa agtccaaata ccccgatacc aactgattga
     2281 gaccttgcaa ctcttgctcg gtcagataat ttttggcaac cctagcctcc aacaaggttg
     2341 gcaattcacc cttgaaggtc gtcaagccca taaattcctt ctcactatct actctagtgt
     2401 aaatcagttc acttgcggta tggtgatgaa tggcgtaatg caacttattc tgcaccgttg
     2461 caaaaaattg ctgggcttca ctacttcttg cattatagtc acttgaggtc gcaaacaagt
     2521 ctaaaatctg acgataaaac actttttcgc ttgaacgaat atctcgaatg cggtcaagga
     2581 gttccttgaa ataagacccg ccgcccaaat ttttcaaacg gtcatcgtcc atagcaaagc
     2641 ctttaatcaa gtactctttt aaaaccgttg aagcgtagtt ccgaaattgt actccacgag
     2701 gtgaccgtac ccgatagccg atagccagta tcatatccag gttgtagtaa gcagtctttc
     2761 ggctctgggt ttttcctgcc attgccccgt gttgagtggt tgtcaactga tagttgacaa
     2821 ccactttttc atcaagttcc ccgtccccaa aaatagcctt aatatgcttg ctgatattct
     2881 gcttggaagt ctgaaaaagt tccgccaact ccaactgggt caaccagact gtcccattgt
     2941 ccagatgaag ctctattgat gccttgccgt catcagttgt gtagatgatg atatcattgg
     3001 tcatggctca attcctctac aatcttacca atttcagcac gcagacggtc aatatttttc
     3061 acagtttcag cgatatcttt gttcaactga acgatgtcaa tcttctctcg cgtatcttcc
     3121 ttttctacat agttcgaaac agataggtta tagtcatttt cgacaatctt ctcatgtgat
     3181 gcaactgaaa caaaatattc cttgtcttct cccttgtcaa atccatctaa aatattctgg
     3241 atattgtctt cggttaagat gttattattg gtttcttttt taaattctcg actggcatcg
     3301 ataaagagtg tatctgtcgt attcttattt ttagccaaaa cgagaataca ggtagcaata
     3361 gaggtaccaa aaaaaagatt gtccggtagc tgaatgacag cctcaacaaa gtttccatcc
     3421 actaggtact tccggatttt ttgctctgca cctccacgat aaaaaatacc agggaaggtc
     3481 acgatggctg ctctgccttt tgacaaaaga taggagagac tgtgcatgat aaaggcaaag
     3541 tcagccttgg actttggagc caaaatccca gctggtgcaa agcgatcatc attgattaag
     3601 gttggatcat cgctgccaat ccacttgata gaatacggtg ggttagacac gatggcatca
     3661 aaaggcttgt cgttgccatg tttggggtcc agcagggtat tgccacgctc aatgctaaat
     3721 ttatcatagt taatgttgtg aagaaacata ttcatccgag ccaggttata ggtggtcata
     3781 ttgatttcct gcccataaaa cccatcttca ataatatgct cggtaaactg cttcttggcc
     3841 tgaagcaaga gagagcctga tccacacgca ggatcgtaga ttttgttaat cttattcttc
     3901 tcgtctttcc ccaacatgac aatcttagcc aacaacttag atacgctttg aggggtgaaa
     3961 aattctccgc ctgacttacc agcattcgag gcatagtttg aaatcaagaa ctcataggca
     4021 tcaccaaaaa ggtcgatttt gttatcctcg aaatccccaa aatcaagatt ggcaatctct
     4081 tctaaaatat ccaccaaacg ctgatttctt tccgcaacgg aattgcccag acggttactc
     4141 cgcgtgtcaa catcatcaaa gagacccttg atatcatgct cactgtcata gccaatcgca
     4201 ctatcctcaa tggcatcaaa aatcttcctc aactccgtgt tgagattttc gttacctcta
     4261 gcctgtttca ccacatttga aaataactgc gacggataga taaaatatcc cttggttttg
     4321 actgcatcat ccttgatgac atctgtaatc tgcccctctg gaaaattagc ataatctaca
     4381 tctggatctc caccctcgat gtaattttta aaattctcac tgataaaacg gtagaacaga
     4441 attcccaaga cgtactgttt gaaatcccaa ccatctactg ctcctcgtac cttatctgca
     4501 atcgcccata ttttccggtg aagttcctgt ctttgtgctt gctctgacat catcattacc
     4561 tcaatttact aaaaactagt attagtatac cattttttca attgctagag aaccctgtcc
     4621 ctatggatat tttctacccc aacatacaac acaacttcaa acacataaat taccaatata
     4681 gactagtaaa gtcagatttc gcaatgacct ttaccttatc aacatttatt aatcaactat
     4741 tcatgcacaa aaacaccaac ctactcacgt aaactggtgt ttgagaaagt tttggaggct
     4801 agtccaattg tttatacaag gattattaag aaatgatttg ttaacaaaca cttgcatgtt
     4861 cattttgaaa tcagtttttc ctaagagagt ctagacgacg aagacgaagc taattcaccg
     4921 aggaatgatt ttctaaacga gacaaggcaa agcgacgtag gcataactaa agttaggcaa
     4981 ggagctttaa cgatgtatcg tgacgaaaat ccttacttga tgcgacctgg acgttctttg
     5041 taaccgtagt aggcatcttc aatgatttct tgcatatggt caaccattgc tagacgtggg
     5101 ttagctgggg tacattgatc ttcgtaggca agaagagcca attcgcgaga gtgttctttg
     5161 agttctttct cgtcgatacc ttgtgctttc aagttcattt ggataccgat gcgttcaccg
     5221 aggtcgtaaa ctgcttgtgc gtatgctgca acagcttctt ctggtgttga gcatggcaag
     5281 cctagaagac gagcgatgtc ttggtatttt tcatctgctt tatagtagtt gtacttaggc
     5341 catgtagctg tcttggctgg acgagtaccg ttgtagcgga taacgtacgg aagcaagata
     5401 gcgtttgtac gaccgtgaac ggtatggaaa cgtccaccaa tcttatgagc cattgagtga
     5461 gaaataccta ggaatgcgtt ggcgaaggcc atacctgcca tagtggatgc gttgtgcatt
     5521 ttctcacgtg atacaaagtc agcattcttc actgagcttt caaggttttc aaatactagt
     5581 ttgatagctt gaagtgctaa accatctgta aagtcgttgg ctactgttga aacgtatgct
     5641 tctgtagcgt gggtcaatac gtccatacca gtatctgctg taacgtgtgc aggtactgtc
     5701 aatacgagtg ctgggtcaac gattgccaca gttggtgtca atgagtagtc agcgattggg
     5761 tacttgcggt tgtttgcctt gtcagagatt acggcaaacg gtgttacttc tgaacctgta
     5821 cctgatgttg ttggaatcgc gataaactta gatttcttac caagttctgg gaacttgaag
     5881 gcacgtttac ggatgtccat gaatttttga acaaggtcat ggaagtcaac agttggttgc
     5941 tcatagaaga gccacattac tttggcagca tccattggtg aaccaccacc gagagcgatg
     6001 attgtatcag gtttaaaggt acgcatcaat tctgtaccct tgtaaactgt tgtgatgtct
     6061 ggatctggtt caacatctga gaagatttgg taaacgactt tattacgacg aagatccaat
     6121 tgttcaataa tacgatccaa gaaaccaagt tctaccatgg catggtccgt aacgatcatc
     6181 acacgttcaa cgtcacgaca tttttggagg tattggatag aatcacgttc gaagtatgtt
     6241 ttagaaggaa ctttaaacca ttgcatatta tttctacgtc ttcctacttt cttgatgttg
     6301 agcaagttca tcgcacttac gttatcactg attgagttac ggccataaga accacaacca
     6361 agtgtcaatg atggcaagaa ggcgttgtaa acatcaccga taccaccgaa agtagatgga
     6421 gagttccaga taacacgaat tgcacgtacg attgtaccaa attctttagc caattcagca
     6481 tcttcagtgt ggatagctgc tgagtgacca agaccgtgga attcaaccat ttgacgggct
     6541 gcttccagac cttcttcacg gccttccact ttcaagactg caataactgg tgacaatttc
     6601 tcacgagtca atggctcttt ttcaccaatt tcagtaactt cagcagccaa gatatttgta
     6661 ccttctggca ctgagaaacc agcttgttca gcaatccatg cagctggacg acctacgatg
     6721 tccgcattca acttgccttc tgcacagttc ttgctgttgg ctttcacacc gaagcagtac
     6781 tcttcaagaa gagctttttc tttcttatta acgaagtagg ttttgtacga tttgaattca
     6841 gctacaaact catcgtatac ttctttatca atgataactg cttgctctga cgcacagacc
     6901 ataccattgt caaatgattt agacatgacg atatcgtgag cagcttggcg gatgtttgca
     6961 gatttttcaa tataggctgg aacgttacct gcacctacac caagagcagg tttaccacaa
     7021 gagtaagccg cacgcaccat tgcgttacca ccagttgcaa ggatcgttgc aatgccatca
     7081 tgcttcatca attcagaagt tgcttccata gatggttttg ttacccactg gatacagttc
     7141 tctggagcac cagctgctac agctgcctca tagacaacgc gtgctgcatg agctgaagat
     7201 tcttgggcag atgggtggaa agcaaaaacg attgggttac gtgttttcaa ggcaatcaat
     7261 gacttgaaga tagcagttga cgttgggtta gttgtcggag taataccaca gataacacca
     7321 actggctcag caatcaaggt caaacctgtt acttcgtctt cttcaatgac accaactgtt
     7381 tttgtatggc gcatattgtt gacaacatgc tcacaggcaa acaaattctt cgtcgcctta
     7441 tcttcgaata caccacgttt ggtttcttca aaagcatgca ttgccagttc accgtgcttg
     7501 tcaagagcag ctaccgaagc cttagctaca atgtagtcta cttcttcttg accaagtttg
     7561 cggaactcat caagagcaac caaacctttt tgaacaagct catcaacgtg cttgcgagct
     7621 tctgctaatt tttcttctgg tgatacaact tttttatcag ccattgtgtt cctccaaatt
     7681 ttcttgctaa ctttttgtta acttt
//
LOCUS       DASGAC010000101         7660 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.101, whole genome shotgun sequence.
ACCESSION   DASGAC010000101 DASGAC010000000
VERSION     DASGAC010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7660
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.101"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            300..1127
                     /gene="mutM"
                     /locus_tag="U1335_001529"
     CDS             300..1127
                     /gene="mutM"
                     /locus_tag="U1335_001529"
                     /EC_number="3.2.2.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase"
                     /protein_id="HEM5231996.1"
                     /translation="MPELPEVETVRRGLNRLVKGKVISKVEVTYAPMIKTGVDAFCQD
                     LLGQEILDVARRGKYLLIYLTDHVLISHLRMEGKYNFFPDQVPANKHFHAFFTFTDDS
                     TLVYQDVRKFGTMELLGKADVEAYFISRKIGPEPTEEDFDLEEFAKKLAKSRKPIKSH
                     LLDQSLVAGLGNIYVDEVLFKAQVHPAQTSNLLSAEQVADLRQATIEVLQLGIEKGGS
                     TIRTYKNALGMDGTMQDYLQVYGKPGQACPRCQTEIVKIQLGGRGTHFCPKCQVKHG"
     gene            1120..1722
                     /locus_tag="U1335_001530"
     CDS             1120..1722
                     /locus_tag="U1335_001530"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEM5231997.1"
                     /translation="MAKIIGLTGGIASGKSTVTAFLREQGYPVIDADAVVHELQAKGG
                     MLYQVLLKEFGQDILSADGNLDRVKLGQAVFADSKLRARLSVLQDQIIRQELLARRDT
                     LKQTEDVIFMDIPLLYEADYSGEVNEVWLVYVDRAQQLERLMKRNGLAVQDAENRLAA
                     QLSLEEKRSQAQVVIDNSGAVEATLVQVARLLEELKDGRR"
     gene            1709..2914
                     /locus_tag="U1335_001531"
     CDS             1709..2914
                     /locus_tag="U1335_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter"
                     /protein_id="HEM5231998.1"
                     /translation="MDDGSSYWKQNLKVAWLGNFLTGTSFTLVMPFISVFVEELGVGP
                     GQVEYYAGLAVSVNALAAALMAPIWGSLADRYGRKPMMVRAAFAMIFTMGGMAFVPNV
                     FWLLALRVLNGVFTGYIPNATALIASQVPKDKTGYALGTLSTGAVAGNLIGPTLGGIL
                     AEMFGVHMVFLLVGLLYAIVVLLTVFYIREDFVPVKKGEEMSVKEVFEQVKDRQMLVG
                     LFVTSMIIIAAAQAVVPILTLYVRHLGQTDNLLFVAGFIISLPGMASLVTSGYLGKIG
                     DRIGNHRLLLIALTYSLLINVFCVFAENPFQLGLLRFMYGFGTGALLPSVNSLLTKLT
                     PKEGISRIFSYNQLFNNLGSVVGPMMGSAVAAHMGYDWVFYLSSGLVLFNLIWSLTNF
                     RNYLKVRDV"
     gene            2914..3063
                     /gene="rpmG"
                     /locus_tag="U1335_001532"
     CDS             2914..3063
                     /gene="rpmG"
                     /locus_tag="U1335_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008809064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEM5231999.1"
                     /translation="MRVKINLQCSECGSKNYLTSKNAKTHPDKIEVLKYCPKERKVTL
                     HLETK"
     gene            3110..3343
                     /gene="secG"
                     /locus_tag="U1335_001533"
     CDS             3110..3343
                     /gene="secG"
                     /locus_tag="U1335_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEM5232000.1"
                     /translation="MYQALLAILLILSVILIVVIFIQPAKNQSSNVFDSSSGALFERT
                     KARGFEAVMQRITAILVFLWMLDALALVIISSK"
     gene            3878..6247
                     /gene="rnr"
                     /locus_tag="U1335_001534"
     CDS             3878..6247
                     /gene="rnr"
                     /locus_tag="U1335_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HEM5232001.1"
                     /translation="MKNEIINYIKEIGPVTMDQLADQFGASSAKSFTDLVKLVSSMEG
                     SRQLVFDNAGRIALPVPKVSKNKVTLQGIFRAHKSGFGFVTIDEEEDDLFVSRDDVNF
                     AIEGDRVEIAIKKVADRFKGTAAEAEVIDILEHSLKTAVGLIIFDEDKPEYAGYIKSK
                     NQKIAQKIYIKKSPLVLTGTEILKVDIEAYPNKKRDHFVATIRDVVGHKDDVGIDVLE
                     VLESMDIVSEFPDEVLAEANRVPESPSEQDFEGRLDLRDEIIFTIDGADAKDLDDAVH
                     IKQLKSGNLELGVHIADVSYYVTEGSALDQEAVKRGTSVYVTDRVVPMLPERLSNGIC
                     SLNPNVDRLTQSAIMEIDRKGKVVKHWIGQTVIKTTFRMTYSDVNDMIAGNQEKLATY
                     KAIVPSVELMVKLHETLETMRYKRGALNFDTTEAKIIVNKDGLPVDIQLRQRGIAERM
                     IESFMLAANECVAEHFAKLDLPFIYRIHEEPKSDKLQKFIDYATSFGLTVYGTASSIS
                     QDALQDLMERVKDEPYADVLNMMLLRSMQQARYSEHNHGHYGLGAEFYTHFTSPIRRY
                     PDLLVHRMVRDYGHNPTEKAEHFEQVIPELAKSSSSLERRAIEAEREVEAMKKAEFMQ
                     EFVGQEFDGVVSSVVKFGLFVELPNTVEGLIHVTNLNEYYQFHERTLTLQGEKSGRVF
                     RVGQPIRIKLTRADKMTGEIDFAHMPSELDIVEKALKAKRRTASHSNRDRDDRSGRGR
                     GKHYKQEAAGRDSGRHKSGKDHKSKSGKKDKKKKPFYKEVAKKNKKKRR"
     gene            6250..6717
                     /gene="smpB"
                     /locus_tag="U1335_001535"
     CDS             6250..6717
                     /gene="smpB"
                     /locus_tag="U1335_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEM5232002.1"
                     /translation="MAKGEGNVIAQNKKARHDYTIVDTVEAGMVLTGTEIKSIRAGRI
                     NLKDGFAQIKQGEAWLVNVHIAPYDEGNIWNQEPTRTRKLLLRKKQIESLGNEVKGTG
                     MTLVPLKVYIKDGFAKVLIGLAKGKHDYDKRESIKRREQDRDIKRTMKAINSR"
     gene            complement(6795..7643)
                     /locus_tag="U1335_001536"
     CDS             complement(6795..7643)
                     /locus_tag="U1335_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001835855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5232003.1"
                     /translation="MLRRKELKLSQKTLAEGICEQSQISKIERGSFMPSAELLFKLSK
                     RLEVPLDYFFNEQFEVKSNLSHFKQLSSKLLEDRNYDNLEYIYRLEMEKKSVLSFEDK
                     MYLEWSKAIIDFYKYDLKDQAISHLEKALSKLSTTTLVYLKILNTLSNFYSLVKREEE
                     YEKNYKLLKELYQTKDLTNQEFLFGYIRIRFNYAHYLQSQKKYSEAMQEALEMIEFCK
                     SKHTSYQLEHFLIIVGNAGASFLDKEQVRNYYLQARELCRIYDHPLMLMKIERFLSNL
                     ENSQEK"
BASE COUNT         2071 a         1467 c         1935 g         2187 t
ORIGIN      
        1 cttgtgtgta agtcacacag cgtcgctctt ctaattttac tatatttaga aaggaaagcc
       61 gaataggtat tggaattgaa catgcctacg actctgtgaa aaaagataac cgtgacctag
      121 gtgccgaagc accatcggtc aggtttctat ttgctttgta attttgttag aaaggacgag
      181 tgtttgcgta cttgaacccg agctaaaagc tcggaaaata gatagagctt cttgtgtgca
      241 agtcacacag cgtcgctctc ctaattttca gtcgcttttt acgctcttgg tatcgtacat
      301 tgccagaatt gcctgaggtt gagacggttc gtcgtggttt aaatcggttg gttaagggaa
      361 aggttatttc caaggtggag gtaacctatg ctcccatgat taagacaggt gtggatgcct
      421 tctgccaaga cttgcttggt caggagattt tagatgtggc ccgtcgtggc aagtatctct
      481 tgatttacct gacggaccat gtcctcattt cccacttgcg gatggaaggt aagtacaatt
      541 tctttccaga tcaggtgcct gccaacaaac actttcatgc ctttttcacc tttacggacg
      601 attcaacctt ggtttatcag gatgtccgca agtttgggac catggagctg ctgggcaagg
      661 cggatgtgga agcctatttt atcagtcgca aaattggtcc tgaaccgact gaggaagatt
      721 ttgacttaga agaatttgcc aagaagttag ctaagtcgag aaagcccatt aagtcgcatc
      781 ttttggacca gtctttagtg gctggtttgg gcaatatcta tgtcgatgag gttttattca
      841 aggcacaagt tcatcctgct caaacgagta atctgctgtc ggcagagcag gtggcagacc
      901 tccgtcaagc caccattgaa gtcctgcaac tggggatcga aaaaggtgga tcaaccattc
      961 ggacctacaa aaatgccttg ggcatggacg ggactatgca ggattattta caagtttatg
     1021 gaaagccagg acaggcttgt ccccgttgcc agacagagat tgtcaaaatc cagctgggcg
     1081 gtcgtgggac acatttctgt cccaagtgtc aggtgaaaca tggctaaaat tatcggttta
     1141 acaggcggaa tcgcctctgg aaaatcaacg gttacagctt ttctgagaga acaaggttat
     1201 ccagtcattg atgcggatgc ggttgtccat gaattgcaag ctaaaggtgg catgctctat
     1261 caggttttgc tgaaagagtt tggtcaagac atcttgtcgg cagatggaaa tttagacagg
     1321 gtcaagctgg gtcaagctgt ttttgcggat agcaaattgc gggctcgttt gtctgtcttg
     1381 caggaccaaa ttatcaggca agaattgttg gctagaaggg atactctcaa gcagaccgaa
     1441 gatgtaattt tcatggatat tcccctgctc tacgaggcag attatagcgg ggaagtaaat
     1501 gaagtctggc tagtttatgt cgatagagcg cagcagttgg aacggcttat gaaacgtaat
     1561 ggtttagctg ttcaagatgc ggaaaatcgt ctggctgctc agctttcttt agaggaaaaa
     1621 cggtcgcaag cccaggtggt gattgacaat agcggagcgg ttgaggcgac cttagtgcag
     1681 gttgctcggc ttttggagga attaaaggat ggacgacggt agtagttatt ggaagcagaa
     1741 tttgaaggtg gcttggttgg gaaatttcct aacagggacg agttttacct tggttatgcc
     1801 ttttatctcg gtttttgtgg aagagttggg ggtaggtcct ggacaggtag aatattatgc
     1861 gggacttgcg gtatctgtta atgcccttgc ggcagccttg atggcgccta tttgggggag
     1921 tttggcggac cgttacggtc gcaagcccat gatggtgcgg gctgcttttg cgatgatttt
     1981 tactatgggt ggtatggcct ttgtaccaaa tgttttttgg ttgcttgcct tacgtgtcct
     2041 aaacggggta tttacagggt acattcctaa tgcgactgcc ttgattgcca gtcaggttcc
     2101 aaaggataag acggggtatg ctctggggac cttatcaaca ggtgcggtag cggggaattt
     2161 gattggtccg accctgggtg gtatcttagc agagatgttt ggtgtacata tggtattttt
     2221 gctggtggga cttctttatg ctatcgttgt gttactgacc gttttctata ttcgagagga
     2281 ttttgttcca gtcaaaaaag gcgaagaaat gtcggttaaa gaggtatttg agcaggtgaa
     2341 agatcggcaa atgctggttg ggctttttgt gacttctatg attattattg cagctgctca
     2401 ggctgttgtt cctatattga ccctctatgt gcggcatttg ggacagacag ataatctgtt
     2461 atttgttgct ggttttatca tttccttgcc tggtatggca tcgctagtga catcaggtta
     2521 tttagggaaa attggtgatc gtattggcaa tcatcgactt ctattaattg ctttgactta
     2581 cagtctgttg attaatgttt tctgtgtttt tgcagaaaat cctttccagc ttggtttgtt
     2641 gcgattcatg tatggttttg ggacaggagc attgttgcct tcggtcaatt ctcttttgac
     2701 caagttgacc ccaaaagaag ggatttcaag gatattttcc tacaaccaac tctttaataa
     2761 tctaggttct gttgttggtc ccatgatggg gtctgcggtg gctgctcaca tgggttatga
     2821 ctgggttttc tatctgtcga gcggacttgt cctctttaac cttatctggt ctttgaccaa
     2881 ttttagaaac tatttgaaag taagggatgt gtagtgagag ttaaaattaa tttacagtgt
     2941 tcagaatgtg gtagtaagaa ctacttgact agcaaaaacg ccaagactca tccagataag
     3001 attgaagtcc ttaaatactg cccaaaagag agaaaagtaa ccctccacct tgaaactaag
     3061 taggttttat ggtataatgt cataagttat tgtagaaagt gaaaaaaata tgtatcaagc
     3121 attattagca attctgttga ttttatctgt tattttgatt gtagtgattt ttattcaacc
     3181 ggctaaaaac cagtctagca acgtctttga ctcttctagt ggagccttat ttgaacgtac
     3241 aaaggcccgt ggttttgaag cggtgatgca acgcattaca gctattcttg tttttctttg
     3301 gatgctggat gcgctggcac ttgttatcat ttcaagtaag tagataaatc agactgggac
     3361 ttgttcttgg tctatttttt tgggagtggg ccagaactcg acaagtatag tcgaatgaat
     3421 tagctttcag acaaggaact gaggcgcagg ctatactaaa gtatggcaag gcgaaagtga
     3481 cgatgtatca aagataattc aaatgactat ataaagagtt catctgccca ccccgcataa
     3541 gttgaatagg tatggttcgg agcgttattc gcgaactatt gagatttgct ttgcaaatcc
     3601 tatctcccac ctccaacaat catttgattg ttggagcaat caaccactgc gtctggatat
     3661 aacgcaaaat acagtctttt agtttgcttt tagtactggg caacgagctg cagactgtac
     3721 tgaagtacga caaagcgagt tcaaataatg atgaaattat ttgaagttgg aaatagggaa
     3781 acggagtttc ctcgtacgtc gcagtaataa aagataaact aaaggactga aagagaaata
     3841 gtgctaggtt tttatcctgc actctggtaa atacaacatg aaaaacgaaa ttattaacta
     3901 tattaaagaa attggtcctg tgactatgga ccagctggca gatcagtttg gagccagttc
     3961 tgctaagagc tttacagact tggtcaagct ggtttctagc atggaaggta gtcgtcaact
     4021 tgtctttgac aatgctgggc ggattgcttt gccagttcca aaagtgtcca aaaacaaggt
     4081 gaccttacag ggtattttcc gtgcccacaa gtcaggcttt ggctttgtga ccattgacga
     4141 agaggaagat gatctatttg ttagccgtga cgatgttaac tttgctatcg aaggtgacag
     4201 agttgaaatt gcaatcaaaa aggttgcaga tcgtttcaag ggaactgctg cggaagcgga
     4261 agtcattgat attttggaac atagcctgaa aacagcggtg ggcttgatta tttttgacga
     4321 agacaagcca gagtatgcag gctacatcaa gtctaaaaac cagaaaatcg ctcagaagat
     4381 ttacatcaag aagtcacctc tggtattgac cgggacggaa atcctaaaag tcgacattga
     4441 agcctatcca aataagaaac gggaccactt tgttgcgacc attcgggacg tagtggggca
     4501 caaggacgat gtgggaatcg atgtcttgga agtcttggag tctatggata tcgtgtcgga
     4561 atttccagat gaagtcttgg cggaggccaa tcgagtgcca gaaagtccgt cagaacagga
     4621 ctttgaagga cgcttggacc tgcgagatga gattatcttt actatcgatg gtgcagatgc
     4681 caaggacttg gacgatgcgg tccatatcaa gcagctcaag agtggcaatc tggagttggg
     4741 tgtccatatc gctgatgtca gctactatgt gacggaaggc tcagccttgg accaggaagc
     4801 tgtcaagcgg ggaacgtctg tctatgtgac cgaccgagtg gtgccaatgt tgccagaacg
     4861 cctgtcaaac ggtatttgtt cccttaatcc aaacgtggat cgtctgaccc agtcggctat
     4921 tatggaaatt gaccgcaagg gaaaggtggt caagcactgg attggccaaa cagttattaa
     4981 aacgaccttc cgtatgacct attccgatgt caatgacatg attgctggaa atcaggaaaa
     5041 gcttgctaca tacaaggcta tcgtgccaag tgtagagctt atggttaaac tccatgaaac
     5101 attggaaacc atgcggtaca aacgcggtgc cctcaacttt gacacgacag aagccaaaat
     5161 catcgtcaac aaggacggtc tgccagtcga tatccagcta cgtcagcggg gcattgctga
     5221 gcggatgatt gagtccttca tgttggcagc caatgagtgc gttgctgagc attttgccaa
     5281 gctggacctg ccttttatct atcggatcca cgaggagcct aagtcagaca agttgcagaa
     5341 gttcatcgac tatgcgacca gctttggtct gacggtatat ggtacggcta gctctatcag
     5401 ccaggatgcc cttcaagatc ttatggagcg ggtcaaggat gaaccctatg cggacgtcct
     5461 caacatgatg ttgctgcgtt ctatgcagca ggcacgctac tcggagcaca accacggcca
     5521 ctacggactg ggtgcggagt tctacaccca cttcaccagt cctatccgcc gctatcccga
     5581 cctgctggtt caccggatgg tgcgggacta tggtcataat cctacggaaa aagcagagca
     5641 ttttgagcag gttattcctg agcttgccaa gtcttcgtcc agtttagaac gccgtgccat
     5701 tgaggcagag cgggaagtcg aagccatgaa gaaggcagag ttcatgcaag aatttgttgg
     5761 gcaagagttt gatggtgtcg tatctagcgt agtcaagttt ggtctctttg ttgagttgcc
     5821 aaacaccgtt gaaggactga tccatgttac caacctcaac gagtactacc agttccacga
     5881 gcgaactctg accttgcagg gtgagaaatc aggtcgtgtc ttccgtgtcg gtcagccaat
     5941 ccgtatcaag ctaacgcggg cggacaagat gacaggggaa atcgattttg cccacatgcc
     6001 gtccgaactg gatattgtcg aaaaagcttt gaaagccaag cggagaactg ctagtcactc
     6061 caaccgtgac cgtgatgatc ggtcagggcg aggacggggc aagcactaca aacaagaagc
     6121 tgctggtcgc gacagcggac gtcacaagtc tggaaaagac cacaagtcaa aaagtggcaa
     6181 aaaagacaag aaaaagaaac cattttacaa agaagtggct aaaaagaaca agaagaaaag
     6241 gagataggca tggccaaggg tgagggcaat gtgattgcgc aaaataaaaa agcccgccac
     6301 gactatacca ttgtcgatac agtggaggcg gggatggtcc tgacggggac ggagattaag
     6361 tctattcgtg cggggcggat caaccttaag gacggctttg cccaaatcaa gcagggggag
     6421 gcttggttgg tcaatgtcca tatcgctccc tacgatgagg gcaatatctg gaaccaggag
     6481 ccgacgcgga cacgtaaact tctcttgcgg aagaagcaga ttgaatctct gggcaatgag
     6541 gtcaagggaa cagggatgac cctggtgccc ctcaaggtct atatcaagga cggctttgcc
     6601 aaggtcctga tagggcttgc caaagggaag cacgattatg acaagcgaga gtcaattaaa
     6661 cgccgtgagc aagaccgtga tattaagcgg actatgaagg ctatcaatag tcgctaagac
     6721 tgggagaaat cctggtcttt ttgtattatc tggtttttcg ttaatctttg ttatccacgt
     6781 tttgcaatgt agcgttattt ttcttgagag ttttcaagat tgctgagaaa acgttcgatt
     6841 ttcataagca taagaggatg atcgtatatg cggcataatt ctcttgcttg taagtagtag
     6901 ttcctcacct gctccttgtc caaaaatgat gcaccagcat tgccgactat tattaaaaaa
     6961 tgttctaatt gatagctagt atgcttagat ttacagaatt caatcatttc aagtgcttct
     7021 tgcatggctt cactatattt tttctgtgac tgtaaatagt gggcgtagtt gaaacggatt
     7081 cggatataac cgaaaagaaa ttcttggttt gtcagatcct tggtttgata gagttctttg
     7141 agaagtttgt aatttttttc atactcttct tcacgtttga ctagagaata aaaattagac
     7201 agagtgttga gaattttaag ataaacaagg gttgtagttg atagtttcga aagggctttt
     7261 tccaaatgtg agatagcttg atcttttaaa tcatatttat aaaagtcaat gatggcttta
     7321 ctccattcga ggtacatttt atcttcaaaa gataaaacac tctttttttc catttccaat
     7381 cgatagatat attctaaatt gtcataattt ctatcttcta atagttttga tgataattgt
     7441 ttgaaatgag agagattaga cttgacctca aattgctcat taaaaaagta gtctagaggc
     7501 acttccagac gcttggatag cttgaagaga agctcagcgg agggcatgaa actccctctt
     7561 tcaattttac tgatttggct ttgttcgcaa ataccttctg cgagagtttt ctgtgatagt
     7621 ttgagttcct tccgccttaa tatgagtttt tcgcctaaca
//
LOCUS       DASGAC010000102         7634 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.102, whole genome shotgun sequence.
ACCESSION   DASGAC010000102 DASGAC010000000
VERSION     DASGAC010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7634
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.102"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            76..333
                     /locus_tag="U1335_001537"
                     /pseudo
     CDS             76..333
                     /locus_tag="U1335_001537"
                     /inference="COORDINATES: protein motif:HMM:TIGR04224.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec-dependent serine-rich glycoprotein
                     adhesin"
     gene            complement(276..692)
                     /locus_tag="U1335_001538"
     CDS             complement(276..692)
                     /locus_tag="U1335_001538"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232004.1"
                     /translation="MTVGSTAVVSVAREVDVDSEAETDSDNETDSEAETDSDNEADSE
                     AETLRLVEAEADSLILMEVDKLTASVCPTDEASSWDTTSVAVVLTTIRSLSTTVSVVS
                     SSCCSTAIGSSSAKAAGATVAPATTAPDAKAAFRYW"
     gene            1276..>7634
                     /locus_tag="U1335_001539"
     CDS             1276..>7634
                     /locus_tag="U1335_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_046165954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM5232005.1"
                     /translation="MLAATTSGAADANQSGIDAISANNGQYTAISVTQNFKWTDIEEN
                     PIIALKMTDGTYKYKKFSGQVTVDKAKAAKDEFVDAATYKATNVPLQAGDKVYIIQES
                     DFTSAPTSIEESYDLTKFHHREHLIFGGWSIYEGATAEELADPDADADSSALIALARP
                     GSFESEIEFKNASYPGEPSIYLPKENNTVLVADSISGALRQSEQSYKNFGLFLSYIDV
                     NDDKVNKPNTVMELPEGVEVVFADRNEQPTTFAAAMDEIMGALRYDPDDGSKVLNPQQ
                     KLKFKFIVKKDGVQIQEDENWREITLHVYSSSDAVKGLVKTTLTNTRNDFEAGIVDNI
                     DFSGLPEEMKKEAIEMEKTYRNVDGTLPQDGAMPQVSNPDGKRYDWVVKVGEESDGTH
                     ATSPVRYFPYDMGLFQGEGDKINKKLRGYLPYITGYIMPPDEADWKAANGIIDIPPTE
                     HDKELMPYFTIGSVFTRTMFDRNMTPEQGGVNKSYWHSLTQAMPIPQLDFEPKVNLDI
                     VTLSDGTPPSTPQPGEPTDSDSASTSASTSASTSASTSALTSASTSASTSALTSASTS
                     ASTSASTSASTSASTSASTSASTSASTSASTSASESASESASTSASTSASTSASTSAS
                     TSASTSASTSASTSASTSASTSASTSALTSASTSASTSASTSASTSASTSASTSASTS
                     ASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTLAS
                     TSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTS
                     ASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSAS
                     TSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTS
                     ASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSAS
                     TSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTS
                     ASTSASMSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSAS
                     TSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSALTSASTSASTS
                     ASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSALTSTSTSASTSASTSAS
                     TSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTS
                     ASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSAS
                     TSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTS
                     ASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSAS
                     TSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTS
                     ASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSAS
                     TSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTS
                     ASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSVSTSAS
                     TSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTS
                     ASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSAS
                     TSASTSASTSASTSTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSAS
                     TSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASTSASKS
                     ESVSSSESVSTSDSVSASESVSSSESVSTSESVSLSESVSISESVSTSASTSESLSAS
                     ESASASTSESEVAKTGSIVVNYVNMDGKPIKLPVTDTENAPVGTGYDTSDNKPETITT
                     EDGVTYVLVPSKTIGSETGSVVAGRTEITYVYQEVKSGSSSASTSESVTPSESGSSSS
                     SEFVSTSESVSSSESVSSSESVSTTESVSTSTSTSESGSSSSSEFV"
BASE COUNT         2340 a         2039 c         1724 g         1531 t
ORIGIN      
        1 tctaataaaa ttgcttatct atgtatatcg tatatgtgtc cgtatttaga aatataatca
       61 tatataggag ttcctatgag acgtaagcaa tttaataaag attttgatga aatcggacgc
      121 aagagccgtg ttaagatgca taaatctggt aaaaactggg tgcgaacagt tatgtctcaa
      181 ctcagtcttt tacgcgtgat gcgagggagc agtcaggagt cggtatcggt atcactgcct
      241 cttgtagata gtgcagaacg cttagaaagt caacgttacc agtacctaaa agctgccttg
      301 gcatcaggag cggtggtggc aggagcgacg gttgcgccag cagcctttgc ggaagaactg
      361 ccgattgctg ttgagcaaca actcgaggaa acaacggaca cagttgttga caaggacctt
      421 atcgttgtta aaaccacggc tactgaagtg gtgtcccaag atgatgcttc atcggtcgga
      481 cagacagatg cggtgagttt atctacttcc atcagtatca gtgagtcagc ttctgcttcg
      541 accagtctaa gtgtttccgc ctcggaatct gcctcattat cagagtcggt ttctgcctct
      601 gaatctgtct cattatcaga gtcagtctct gcctctgaat caacgtctac ttctctagcg
      661 acagaaacga ctgcggtaga gccgactgtc acagaatcag cttcacagct tgcgactcaa
      721 actgctactg agcgcacagc aactatcgac tacatcgtag cctatcagaa cgaagaaggt
      781 accatagtat cagggacggc tcacaagcta tcgctcacaa cgacagatac cgttgccaag
      841 actactgtcc aaattgttgt ggccctccca gacggctatc aattggcagc aggacaggaa
      901 gctacgcttt cccaagaagt tactgaaaat gccctcaacc ttatcacggt aaaagtggtt
      961 aaggaggaag ccgaagcaag cgagcaggcc tcagcccttc aagaagccaa gaaagtcctt
     1021 gaacaagtca tctcagaagc ggaagtcttg tcagccgatg ctcttcgtaa agcagctaag
     1081 tcaacagcag acacaagctc gcttcaatca gcagctaatg caaccaaagc agcagcagaa
     1141 atagccaacc aagtctttgc ggatgaacat gccagtcttg aagatatcaa tgcccaaatc
     1201 acagctatcc gtaccgcagt aggaaacttg gttccagagc tgacaagctt tacaggaacg
     1261 gaagaagtga cggttatgct agctgcaacg acatcagggg cagcagatgc caaccaaagc
     1321 ggtattgacg ctatttccgc taataacgga caatatacgg ctatcagcgt aacgcaaaac
     1381 ttcaagtgga cggatataga ggaaaatcct atcattgcac taaagatgac ggatggaacc
     1441 tataagtaca agaagtttag cggtcaggtt accgtggata aagcaaaggc ggcaaaagac
     1501 gaatttgtag atgctgcgac atacaaagcg acaaacgttc cattgcaggc aggcgataaa
     1561 gtatatatta ttcaggaatc ggactttacc tccgccccga cctctattga ggaaagctat
     1621 gacttgacga agttccacca tagagaacat ctgatttttg gtgggtggag tatttatgag
     1681 ggggctactg ctgaagagct ggctgatcct gatgctgatg cggattctag tgcacttata
     1741 gcattggcac gaccgggctc ctttgaatcg gagattgagt ttaagaatgc gagttatcct
     1801 ggagaaccat cgatatattt gccgaaagaa aataatactg tgttggtggc ggacagtatc
     1861 agtggggctt tgaggcagtc agaacagtct tacaagaatt ttggtttgtt cttgtcatat
     1921 atagatgtaa acgatgataa ggtcaacaag ccaaataccg tcatggaatt gccagaaggc
     1981 gtggaggtgg tctttgcaga tcggaacgaa cagccgacaa cctttgctgc ggctatggac
     2041 gagattatgg gtgcactccg atatgatcct gatgatgggt cgaaggtttt aaatcctcaa
     2101 cagaaattaa aatttaagtt tatcgtaaaa aaggatggcg tccaaatcca agaagatgaa
     2161 aactggagag aaattacatt acatgtgtat agtagttctg atgcagtgaa ggggctggtg
     2221 aaaacaacgc tcacaaatac acgtaatgac tttgaagcgg gcatcgtaga caatatcgac
     2281 ttctccggct tgccggaaga gatgaaaaaa gaagcgatag agatggagaa aacatatcgg
     2341 aatgtggacg gaactctacc gcaagacgga gcaatgccgc aagtttcgaa tccggacggt
     2401 aagcgctatg actgggtagt taaggtaggt gaagaaagcg acggtactca cgctacatca
     2461 ccggtacgat atttcccgta tgacatgggt ttatttcagg gagagggaga taaaattaat
     2521 aaaaagctgc ggggatatct accttatatc actggttaca tcatgcctcc ggatgaggcg
     2581 gattggaagg ctgctaatgg tataatcgat attcctccca ctgaacatga taaggaattg
     2641 atgccatatt tcaccatagg ttccgtcttt acaagaacca tgtttgatcg taatatgact
     2701 ccagaacagg gaggcgtgaa taaaagctat tggcactcgt tgacgcaggc gatgcctatc
     2761 ccgcagcttg actttgagcc taaagttaat ctggatatcg taaccctttc cgatggaaca
     2821 ccaccgtcaa ctccacaacc gggtgagccg accgattcag actcagcatc aacaagtgcg
     2881 tcgacatcgg caagtacttc agcaagtacg tcagcattaa caagtgcctc aacgtcagca
     2941 agtacatcag cattaacaag tgcatcgacg tcagcaagta catccgcatc aacgtcggca
     3001 agtacatccg catcgactag cgcaagtacg tccgcatcga cgtcagcaag tacgtcagca
     3061 tcgacatcag catctgagtc agcatctgaa tcagcaagca catcagcttc aaccagcgca
     3121 agtacaagtg cctcaacatc ggcaagtacg tccgcatcga caagtgcaag cacgtctgcg
     3181 tcaaccagcg ccagcacgtc cgcttcaacg tcagccagca cgtctgcatt aacaagcgca
     3241 agtacgtctg cttcaaccag cgcaagtaca agtgcctcaa cgtcagcaag tacgtccgca
     3301 tcgacaagtg caagcacaag tgcatcaaca agcgcaagca cgtcagcttc aacgtcagca
     3361 agcacaagtg cttcaaccag cgcaagcaca tccgcatcga caagtgcaag cacaagtgcc
     3421 tcaacgtcag caagtacgtc agcatcgact agcgcaagta cgtcagcatc gacaagcgca
     3481 agcacgttag catcgacaag cgcaagcacg tcagcatcga caagtgcaag tacgtccgca
     3541 tcgacaagtg caagcacaag tgcctcaacg tcagccagca cgtccgcatc gacaagcgca
     3601 agtacatcgg catcgacaag cgcaagcacg tcagcatcaa ccagcgcaag cacaagtgcc
     3661 tcgacgtcag caagtacgtc agcatcgaca agtgcaagca caagtgcttc aacgtcagcc
     3721 agcacgtcag catcaaccag cgcaagtacg tccgcatcaa ccagcgcaag cacaagtgcc
     3781 tcaacgtcag caagtacatc cgcttcaacc agcgcaagta caagtgcttc aaccagcgca
     3841 agcacaagtg cttcaacgtc agcaagtaca tccgcttcaa catcggcaag cacaagtgct
     3901 tcaacgtcag caagcacaag tgcttcaacg tcagcaagta cgtccgcttc aaccagcgca
     3961 agtacaagtg cttcaaccag cgcaagcacg tctgcatcga ctagcgcaag cacaagtgca
     4021 tcgacgtcag caagtacgtc agcatcgaca agtgcaagta catcggcatc aacgtcggca
     4081 agtacaagtg cttcaacgtc agccagcacg tcagcgtcaa ctagcgcaag cacaagtgct
     4141 tcaacgtcag caagtacgtc tgcatcaacc agcgcaagca caagtgcatc aacgtcagca
     4201 agcacgtctg cttcaaccag cgcaagtaca tccgcgtcaa catcggcaag tacgtcagct
     4261 tcaaccagcg caagcacgtc tgcatcgacg tcagcaagta caagtgcctc aacgtcagca
     4321 agtacgtcag cctcaaccag cgcaagtact tcagcatcaa caagtgcaag tacgtccgct
     4381 tcaatgagtg caagtacatc agcaagtacg tccgcatcga ctagcgcaag cacaagtgct
     4441 tcaacgtcag caagtacatc ggcctcgaca agtgcaagta cgtctgcatc gacgtcggca
     4501 agtacaagtg cttcaaccag cgcaagcaca agtgcttcaa caagtgcaag tacaagtgct
     4561 tcaacatcgg caagcacgtc tgcttcaacg tcagcaagta catccgcttc aacgtcagcc
     4621 agcacgtctg cttcaaccag cgcaagtaca agtgcctcaa cgtcagcaag tacatcagca
     4681 ttaacaagtg cgtcaacgtc agccagcacg tccgcttcaa catcggcaag tacaagtgct
     4741 tcaaccagcg caagtacaag tgcctcaaca agtgcaagta cgtccgcatc gactagcgca
     4801 agtacaagtg cctcgacgtc agcaagtaca tcagcattaa caagtacctc aacgtcagca
     4861 agtacgtcag catcaacaag tgcaagtaca tccgcttcga caagtgcaag tacaagtgca
     4921 tcaacgtcag caagtacgtc cgcttcaacc agcgcaagta catccgcttc aacatcggca
     4981 agtacgtccg cctcgacaag tgcaagcacg tctgcttcaa catcggcaag cacaagtgcc
     5041 tcaacgtcag caagcacgtc tgcttcaaca agtgcaagca cgtctgcttc aactagcgca
     5101 agtacaagtg cctcaacatc ggcaagcacg tccgcatcga caagtgcaag tacgtcagca
     5161 tcgactagcg caagtacaag tgcctcaacg tcagcaagta cgtcagcatc aacaagtgcc
     5221 agcacgtctg cttcaactag cgcaagtaca agtgcctcaa catcggcaag cacgtccgcc
     5281 tcgacaagtg caagtacgtc agcatcgact agcgcaagta caagtgcctc aacgtcagca
     5341 agtacgtcag catcaacaag tgccagcacg tctgcttcaa ccagcgcaag cacaagtgcc
     5401 tcaacatcgg caagcacgtc agcatcaacc agcgcaagta cgtccgcttc aaccagcgca
     5461 agtacatcgg catcgacaag cgccagcaca agtgcttcaa cgtcagcaag tacgtctgca
     5521 tcaaccagcg caagtacaag tgcctcaaca tcggcaagca cgtcagcttc aacaagcgca
     5581 agtacatccg catcgacaag tgcttcaaca agcgcaagca caagtgcttc aacgtcagca
     5641 agtacgtccg catcaaccag cgcaagtacg tcagcatcaa caagtgcaag cacttccgca
     5701 tcgactagcg caagcacgtc agcatcgaca agtgcaagca cgtctgcttc aaccagcgca
     5761 agtacaagtg cctcaacgtc agcaagtacg tccgcatcga caagtgcaag tacatccgca
     5821 tcaacgtcag ccagcacgtc tgcatcgaca agtgcaagca cgtcagcttc aacaagcgca
     5881 agcacaagtg cttcaacatc ggcaagcacg tctgcatcga caagtgcaag tacatccgca
     5941 tcaacgtcag ccagcacgtc cgcatcgact agcgcaagta caagtgcctc aacgtcagca
     6001 agtacgtctg catcgacgtc agcaagtaca tcggcttcaa cgtcagcaag cacgtctgct
     6061 tcaaccagcg caagtacaag tgcctcaacg tcagcaagta cgtccgcttc aacatcggca
     6121 agcacaagtg catcgacgtc agcaagcaca tcagcttcaa cgtcagcaag tacgtctgct
     6181 tcaactagcg caagtacaag tgcttcaacc agcgcaagca caagtgcttc aaccagcgca
     6241 agcacaagtg cctcaacgtc agtaagtacg tccgcttcaa ccagcgcaag cacaagtgct
     6301 tcaacatcgg caagcacgtc tgcatcgaca agtgcaagta catccgcatc aaccagcgca
     6361 agcacaagtg cctcaacgtc ggcaagtaca tccgcatcaa catcggcaag tacgtccgca
     6421 tcaactagtg caagtacaag tgcttcaaca tcggcaagta cgtccgcatc gacaagtgca
     6481 agtacatccg cctcaacgtc agcaagtacg tctgcttcga caagtgcaag tacaagtgcc
     6541 tcaacgtcag caagcacgtc tgcttcaact agcgcaagta caagtgcttc aacatcggca
     6601 agcacaagtg cctcaacgtc agcaagtaca agtgcttcaa ccagcgcaag tacgtccgca
     6661 tcaacttcaa ccagcgcaag tacaagtgca tcgacgtcag caagcacttc cgcatcaaca
     6721 agtgcaagta cgtcagcatc gactagcgca agcacgtctg catcgactag cgcaagcacg
     6781 tcagcatcaa ccagcgcaag cacaagtgcc tcaacgtcag caagcacaag tgcttcaacc
     6841 agcgcaagca cgtcggcatc gacaagtgca agcacaagtg catcaacgtc agcaagtacg
     6901 tcggcatcga caagtgcaag cacaagtgcc tcaacgtcag caagtacaag tgcttcaaca
     6961 tcggcaagta aatcagaatc agtatcaagt tcagaatcag tttctacgtc agattctgta
     7021 tcagcatctg agtcagtaag cagttcagaa tctgtttcta catcagaatc tgtatcgtta
     7081 tcagagtcgg taagtatttc cgaatctgta tccacatccg cctcaacatc agagtcactc
     7141 tcagcttcag aatcagcaag cgcatcaacg tctgaatccg aagttgctaa gacaggatcg
     7201 attgttgtga attatgtaaa tatggatgga aaacctatca agctcccagt cacagataca
     7261 gaaaatgctc cagtgggtac aggttatgat acaagtgata acaagccaga gaccattaca
     7321 accgaagatg gcgtaaccta tgttctcgta ccatctaaaa caatcggaag cgaaacagga
     7381 agcgttgtag caggtagaac tgaaattact tatgtttacc aagaagtgaa atcgggttca
     7441 agttccgcaa gtacatccga atcagtaacg ccatcagagt caggaagttc atcatcttct
     7501 gaatttgtct caacatccga atcagtttca agctctgaat cggtaagtag ttcagaatca
     7561 gtgtcaacaa ctgaatcagt ttcgacaagt acgtcaactt cagagtcagg aagttcatca
     7621 tcttctgaat ttgt
//
LOCUS       DASGAC010000103         7623 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.103, whole genome shotgun sequence.
ACCESSION   DASGAC010000103 DASGAC010000000
VERSION     DASGAC010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7623)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7623)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7623
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.103"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            231..2450
                     /gene="pnp"
                     /locus_tag="U1335_001540"
     CDS             231..2450
                     /gene="pnp"
                     /locus_tag="U1335_001540"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEM5232006.1"
                     /translation="MSKQVFETVFAGKKLVVETGQVAKQANGAVVVRYGDSTVLTAAV
                     MSKKMATGDFFPLQVNYEEKMYAAGKFPGGWMKREGRPSTDATLTARLIDRPIRPMFA
                     EGFRNEVQVINTVLSYDPDASAPMAAMFGSSLALAISDIPFNGPIAGVQVGYVNGELI
                     INPDKAQMEESLLDLTVAGNKDAINMVESGAKELSEDILLEALLKGHAAIQELLDFQN
                     QIVAAVGKEKADVELLQVDPELQAEIVAAYNDDLKKAVQVEEKLAREDATNAVRETVI
                     AAYEEKYAEHEEFDRIMRDVHEILELMEHAEVRRLITEDKVRPDGRRVDEIRPLDAEV
                     DFLPNVHGSGLFTRGQTQALSVLTLAPMGETQIIDGLDDEYKKRFLHHYNFPQYSVGS
                     TGRYGAPGRREIGHGALGERALEQVLPSLEDFPYAIRLVAEVLESNGSSSQASITAGT
                     LALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQGLEDHFGDMDFKVAGTRDGITAL
                     QMDIKIDGITPQILEEALAQAKKARFEILDVIEATIPEVRPDLAPTAPKIDTIKIDVD
                     KIKIVIGKGGETIDKIIAETGVKIDIDEDGLVAIFSPDRDAIERTKEIIAGLVREAKV
                     GEVFQAKVVRLEKFGAFVNLFDKTDALVHVSEMAWTRVNKPEDLVEIGDIVDVKVIKI
                     DDKGRIDASMKALLPKPEGYVEPEKRERSDRPRRHKDNKEKKENNFGEFKFHKVEKK"
     gene            2504..3121
                     /gene="cysE"
                     /locus_tag="U1335_001541"
     CDS             2504..3121
                     /gene="cysE"
                     /locus_tag="U1335_001541"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000539958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEM5232007.1"
                     /translation="MGWWKDTIEIVKEKDPAARTTLEVLLTYPGVKALAAHRLSHWMW
                     KKGFKLLARMHSQFWRFWTNIEIHPGAEIASGVFIDHGAGLVIGETAIIESGVMLYHG
                     VTLGGTGKDCGKRHPTVRKGALVSAHAQVIGPIEIGENAKVGAAAVVLADVPADVTVV
                     GMPAKIVRVHGQKDEKVIHDMEGGREHYTTKLAELREASHRSSHL"
     gene            3177..4037
                     /locus_tag="U1335_001542"
     CDS             3177..4037
                     /locus_tag="U1335_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5232008.1"
                     /translation="MITATNVLNPQQLSAAKTLISTVQSHDGTYRDPYLSNMLNFDPE
                     MPAFFLAYQDQQLVGLLTVYADDEDVELAILVHPDYRRQGLARKLYDCYQTKTANYPI
                     ASVTFQTERVFLDKHPDLATAWNLVEDTDTETWLGREREPYQFSQQAELTVSLAQAHH
                     ADSIARCKTAAFGNDYEVALRYVREAIADADSLLYLLEHSGAVIGSCTVDILTNDNYL
                     YGLAIAPDQQQKGYGTYLVKAVINDLIRKNDKPFQIAVEDDNLIAKRLYENIGFTKQT
                     QVVYLDPKEG"
     gene            4039..4812
                     /locus_tag="U1335_001543"
     CDS             4039..4812
                     /locus_tag="U1335_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside phosphorylase"
                     /protein_id="HEM5232009.1"
                     /translation="MLLEEFENTSAVIEPTAKAIRGGGEVCETMIFSFNGEIVDCVRQ
                     LPESREGGHLQTLNGRHPWYILERDGLQVAVMLAVIGAPMAVGHLEELKACGFENFIV
                     LGSCGVLDKSLAADKIILPSSALRDEGTSYHYAPASEEISYDPALLLTMEKALDQAGI
                     EHVRAKTWTTDAFYRETAAKVKRRLAAGAMVVDMEASAIMAWANYRQAKVYQFFYTAD
                     YVDHHKNEWDARREERTADSMTFFEVAMAIARKLESTSC"
     gene            4806..4991
                     /locus_tag="U1335_001544"
     CDS             4806..4991
                     /locus_tag="U1335_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232010.1"
                     /translation="MLKKLVRQNWPYVLTAIAGTIMFILKFSQGSWQVGMIWLAATAY
                     WLVKLYQKYQVLKNTQK"
     gene            5002..6345
                     /locus_tag="U1335_001545"
     CDS             5002..6345
                     /locus_tag="U1335_001545"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002916477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEM5232011.1"
                     /translation="MIKIYDTMTRSLRDFVPLEEGKVKMYVCGPTVYNYIHIGNARSV
                     VAFDTIRRYFEYRGHDVTYISNFTDVDDKIIKAANEAGMTTKELSDKFIAAFKEDVAK
                     LGVKPATKNPRVIDYMDEIIDFVQVLIDKGYAYEASGDVYFRVEKAENYARLANKTLS
                     DLEAGASGRVEGEGQLKEHPFDFALWKTAKPGEVSWESPWGAGRPGWHIECSVMATEI
                     LGDTIDIHGGGADLEFPHHTNEIAQSECKTGQTFANYWMHNAMLNINDEKMSKSLGNF
                     LTAHDMLEQIDGQVLRFFLSTQHYRRPLNYTEKAISDAEINLKYLKNTYTQPVQNSVD
                     KSALELHLAAFEAAMDDDFNAANGITAIFDFAKWINSGNYDETVKEAFGNMLAVFGIV
                     FEEEVLDSEIEALIAERQVARANRDFATADRIRDELAAQGIKLLDTKDGVRWTRD"
     gene            6338..6736
                     /locus_tag="U1335_001546"
     CDS             6338..6736
                     /locus_tag="U1335_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mini-ribonuclease 3"
                     /protein_id="HEM5232012.1"
                     /translation="MTKAVDVNLINGIALAFEGDAVYSMYIRRHLIFKGLTKPNKLHG
                     EANKYVSAKAQASLISALLEAQLLTEKEEEIYKRGRNTNSHTKAKNADVVTYRMSTGF
                     EAVLGYLHMTEQMERLEELVAWCVDKIERG"
     gene            6738..7592
                     /locus_tag="U1335_001547"
     CDS             6738..7592
                     /locus_tag="U1335_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5232013.1"
                     /translation="MDEKELVSWFPQAKLSQVEGECSLQLGDGSYLDLSDADLTDREG
                     YLLSLLSHPRKQVQSSPWQSYLQGQGRIPQTVEAIQFIHIHLWSQKEAQLDAWQAMMT
                     DLLPSQLAQVQLTPQDYLIVLEQGTWMDHQTVLQDTLSALEFDFGLRLTLLVGQVWPK
                     HVSDHWPRLYQAEAQLFAHWRARYQQSAVLSFSQLFLWGQGRAGLELSLIKASMLELI
                     DQQDMQAIILALWAEGAVVTKAAQVLYIHRNTLQYRLEKWQDMTGLQLKDLTDLSFCY
                     QVLLDRQF"
BASE COUNT         2075 a         1679 c         1931 g         1938 t
ORIGIN      
        1 atattttata gatagttgat tttagagtcg gttttacgat gggcagttct ttattcgttt
       61 ttccacggtt tctatcagaa attccttcct caattcccca cattttccgt caaatatgat
      121 aaaataagaa gtatgcgtgg ttttgtgcaa aagagagtga aacaagcttg tttgattgtc
      181 ttttgtagaa aacacgcaag aaaaatttca gaaaaaatag gagacaattc atgtcaaaac
      241 aagtatttga aacggttttt gctggcaaga aattggtcgt tgaaactggc caggttgcca
      301 aacaagccaa cggtgcggtt gtcgttcgct acggtgactc cacagttctt acagcggcgg
      361 ttatgtccaa aaaaatggcg acgggagact tcttccccct ccaagtcaac tatgaagaga
      421 aaatgtacgc tgctgggaaa ttcccaggtg gctggatgaa gcgtgaaggc cgtccgtcaa
      481 ctgatgcgac cttgactgct cgtttgattg accgtccgat ccgtcctatg tttgcggaag
      541 gtttccgtaa tgaagtccaa gtcatcaaca cagtgctttc ttacgatcca gatgcttctg
      601 ctccaatggc agctatgttt ggttcttcat tggcattggc aatctcagac attccattca
      661 acggtccaat cgcaggtgtc caggtcggct atgtcaacgg tgaactcatc attaaccctg
      721 acaaggctca gatggaagaa tcactccttg acctgacagt ggctggtaac aaggacgcca
      781 tcaacatggt agagtctggt gccaaagaat tgtcagaaga catcctgttg gaagccctct
      841 tgaaaggtca tgcggctatt caagaactcc ttgacttcca aaatcaaatc gtagcagcag
      901 tcggcaagga aaaagcagat gtggagctcc ttcaagtgga cccagaattg caggctgaga
      961 ttgttgcggc ttacaatgac gatttgaaaa aagcggtgca ggtagaagaa aaattggccc
     1021 gtgaagatgc gaccaatgcc gtgcgtgaaa ccgtcatcgc agcctacgaa gaaaaatacg
     1081 ctgaacacga agaatttgac cgcatcatgc gtgatgttca tgaaatcttg gaactcatgg
     1141 agcacgcaga ggttcgtcgt ttgattacag aagacaaggt ccgcccagat ggacgccgtg
     1201 tggatgagat tcgtccgcta gatgcagaag tggacttctt gccaaacgtt cacggttcag
     1261 gtctctttac ccgtggtcaa acccaagctc tttctgtctt gaccttggcc ccaatgggtg
     1321 aaacccaaat catcgacggt ttggatgatg agtacaagaa acgcttcttg caccactata
     1381 acttcccaca atactcagtg ggatcaacag gtcgttacgg agcccctggt cgtcgtgaaa
     1441 ttggtcacgg ggcccttggt gaacgtgctc ttgagcaagt attgccaagc ctagaagact
     1501 tcccttacgc tatccgcttg gtggcagaag ttttggaatc aaacggttct tcttcgcagg
     1561 cttctatcac agctggtacc cttgccctca tggcaggtgg tgtgccaatc aaggcaccag
     1621 ttgcagggat tgccatgggt ctgatttcag acggtaccaa ctacaccgtc ttgaccgata
     1681 ttcaaggtct tgaggatcac ttcggcgata tggacttcaa ggtggcgggt acccgtgacg
     1741 gtatcacagc ccttcaaatg gacattaaga tcgacggtat cacaccgcaa atcttggaag
     1801 aagccttggc acaagctaag aaagctcgtt ttgaaatcct tgatgtcatc gaagcgacca
     1861 ttccagaagt tcgtcctgac ttggcaccaa ccgcaccgaa gattgatact atcaagattg
     1921 atgtggacaa gatcaagatt gttatcggta agggtggcga aaccatcgat aagattattg
     1981 cagaaactgg cgtgaaaatc gatatcgacg aagacggtct tgtcgctatc ttctcgccag
     2041 atcgcgatgc gattgaacgg accaaggaaa tcatcgcagg tcttgttcgc gaggcaaaag
     2101 tgggcgaagt cttccaagca aaagtggttc gtttggagaa attcggtgcc tttgtcaacc
     2161 tctttgacaa gacagatgct ctggtccacg tttctgaaat ggcttggacc cgtgtcaata
     2221 aaccagaaga tttggttgaa attggcgata ttgtcgatgt caaagttatc aagattgatg
     2281 ataaaggacg tattgatgct tctatgaagg ctcttcttcc aaaaccagaa ggctatgtag
     2341 agccagaaaa acgcgagcgt tcggacagac cacgccgtca caaagacaac aaagagaaaa
     2401 aagagaacaa ctttggcgaa ttcaaattcc acaaggttga aaagaaataa gctgagtaga
     2461 caagttcggt agcgggcttg tcttctcgct agaaggagtg actatgggtt ggtggaagga
     2521 caccattgag attgtaaaag aaaaagatcc ggcagcacgg acgaccttgg aagttctttt
     2581 gacttaccca ggtgtcaagg ccttggctgc ccaccgcctg tcccactgga tgtggaaaaa
     2641 aggctttaaa ttactggctc ggatgcacag ccaattttgg cgtttttgga ccaatattga
     2701 aattcatcca ggtgctgaga ttgcttcggg ggttttcatt gaccacggag ctggtttggt
     2761 tattggtgag acggctatta ttgagtctgg tgtcatgctt taccatggcg taacgcttgg
     2821 tggtacgggt aaggattgtg gcaaacgcca tccgactgtg cgaaaagggg ctctggtttc
     2881 tgcccacgcc caagtcatcg gccctattga gattggggaa aatgctaaag tgggtgcagc
     2941 tgccgttgtc ctagccgatg ttccagcaga tgtgacagtc gtcggcatgc cagccaagat
     3001 cgtccgtgtg catggtcaaa aagatgagaa ggtcattcat gacatggaag gtggtcgtga
     3061 acactacacc accaaactgg cagagctgag agaagccagc caccgttcgt cacacttgta
     3121 ggaaagccac atatggtaag ttctatgtaa gttagcaata gagaggaaaa ataagcatga
     3181 taacagcaac taatgtccta aatccccagc agttatccgc agcaaaaact ctgataagca
     3241 ctgtacaatc ccatgacgga acctatcgtg acccttacct gtcaaatatg ctcaactttg
     3301 accctgaaat gccagctttt ttcttggcct atcaagacca acagttggtg ggactcttga
     3361 ctgtgtatgc cgatgatgag gatgtggagc ttgcaattct cgtgcaccca gactaccgca
     3421 gacagggtct ggcacgcaag ctatatgatt gctaccagac gaagacggct aactatccta
     3481 tcgctagtgt gacctttcag accgaacgtg tctttctgga caagcaccca gaccttgcga
     3541 cagcatggaa cttggtagaa gatacggata ctgagacatg gctgggacgt gagcgagagc
     3601 cgtatcagtt ctcacaacag gctgaactca cagtaagttt ggcacaggct caccatgcag
     3661 acagtattgc acgctgtaag actgcggcat tcggtaacga ctatgaggtg gctcttcgtt
     3721 acgtgcgtga agccattgcg gatgcggata gtttacttta tcttttggaa catagcggag
     3781 cggttatcgg ttcttgcaca gtagatatat tgaccaatga taactatctt tacggtttag
     3841 ctatcgcacc agaccagcaa caaaaaggtt acggcaccta cttagtcaaa gctgtcatca
     3901 atgaccttat caggaaaaac gacaaacctt ttcaaatcgc cgtcgaagat gataacctca
     3961 tcgctaagcg gctgtatgaa aatatcggtt ttacaaagca gacacaagtg gtctacttag
     4021 acccgaaaga aggttgatat gctattagaa gaatttgaaa atacctctgc agttattgaa
     4081 ccgacggcta aggctatccg tggtggcggt gaggtatgtg agaccatgat tttctccttc
     4141 aatggggaaa ttgtagattg tgtccgtcag ctacctgaga gcagagaagg tggtcattta
     4201 cagaccctaa atggtcgtca tccttggtat attttggaaa gagatggact gcaggttgcg
     4261 gtcatgttgg cagtaatcgg tgctccaatg gcagttggtc atctggaaga gctgaaagcc
     4321 tgtggctttg agaattttat agttcttggt tcctgcggtg tgctggataa gtcgcttgct
     4381 gcggataaga ttatccttcc tagctctgct cttcgggatg agggaactag ctaccactac
     4441 gctcctgcca gcgaggaaat cagctatgac cctgctctgc tattgaccat ggaaaaggcc
     4501 ttggaccaag caggaatcga acacgtgcgg gccaagacct ggacgacgga tgctttttat
     4561 cgggaaacgg ctgccaaggt caaacgccgt ctagccgctg gtgccatggt ggtcgatatg
     4621 gaagcttctg ctatcatggc ttgggccaat tatcgtcagg ccaaggtcta tcaatttttc
     4681 tacacggcag actatgtgga ccaccacaag aatgaatggg atgcccgtcg ggaagaacgg
     4741 acggctgaca gtatgacctt ctttgaagta gccatggcca ttgcaagaaa attagaaagt
     4801 acatcatgtt aaaaaaatta gtaagacaaa actggcctta tgtgttgacc gccattgctg
     4861 ggacaatcat gtttatcctt aaattttccc aaggaagctg gcaggtaggg atgatttggc
     4921 tggccgcgac agcttattgg ctagtaaaat tgtatcaaaa gtatcaagtc ctaaagaata
     4981 ctcagaagta atggagaagc tatgattaaa atttacgata ccatgactcg cagtctgcgt
     5041 gactttgtgc ccttggaaga gggtaaggtc aagatgtatg tttgcggtcc gacggtttac
     5101 aattatatcc atatcggaaa tgctcggagt gtggtggctt ttgacaccat acgtcgctat
     5161 tttgaatacc gtggccatga tgtgacctac atttcaaact ttacagatgt ggatgacaag
     5221 attatcaagg ctgctaatga agctggcatg acaacaaagg aactgtctga taagtttatc
     5281 gcagccttca aggaggatgt ggcaaaactg ggtgtcaaac ctgctaccaa aaatcctcgt
     5341 gtgatcgact acatggatga aatcattgat tttgtgcagg tcttgattga caagggttac
     5401 gcctatgaag cttctgggga tgtctatttc cgtgtggaaa aggcggagaa ttatgctcgt
     5461 ttggccaaca aaaccctgtc tgacttggag gctggtgctt ctggtcgagt tgagggagaa
     5521 ggtcaactca aagaacatcc tttcgacttt gccctgtgga aaactgccaa gccaggtgaa
     5581 gtgtcttggg aaagcccttg gggagcaggt cgtccaggtt ggcatatcga gtgttcggtt
     5641 atggcgacag agattttggg agataccatt gatattcacg gtggtggagc ggacttggaa
     5701 ttccctcacc ataccaatga aattgcccag tctgagtgca aaacaggtca aacctttgcc
     5761 aactactgga tgcacaatgc catgctcaat atcaacgatg agaagatgtc caagtccttg
     5821 ggcaatttcc tgacagcaca tgacatgttg gaacaaatcg acgggcaggt cttgcgcttc
     5881 ttcctatcga cccagcacta ccgccgtcca ctcaactaca ctgagaaggc tatttcagat
     5941 gcggaaatca atctcaaata tctaaaaaat acttatacac aacctgtgca aaactctgtg
     6001 gataagtcag ctcttgaatt acatctggcg gcctttgaag cggcaatgga tgatgatttt
     6061 aatgcggcaa atgggattac ggctatcttt gactttgcca aatggatcaa ctcaggcaat
     6121 tacgatgaaa ctgtaaaaga agcctttggc aatatgctcg ccgtctttgg tattgtcttt
     6181 gaagaagaag ttttggacag cgagatcgaa gccttgatag cagaacgtca agtagcgcgt
     6241 gccaatcggg actttgcgac ggctgaccgg attcgtgatg aattagcggc tcagggcatc
     6301 aaacttttgg ataccaagga tggtgtgagg tggacacgtg actaaggcag tagatgtcaa
     6361 tctcatcaat ggaattgccc tggctttcga aggggatgct gtttattcca tgtatatcag
     6421 acggcacttg attttcaagg ggctgaccaa gcccaataaa ttgcacggtg aggctaacaa
     6481 atacgtctcg gccaaggctc aggcaagcct gatctccgcc ctcttagaag ctcagctatt
     6541 gaccgaaaaa gaggaagaaa tctacaagcg gggtcgcaac actaatagtc acaccaaggc
     6601 caagaatgcg gacgtggtga cctatcggat gtccacaggt tttgaggcgg ttttgggcta
     6661 cctgcacatg actgagcaga tggaacgctt ggaggagctg gtcgcttggt gtgttgacaa
     6721 aatagaaagg ggataagatg gacgaaaagg aacttgtaag ctggtttccg caggcaaagt
     6781 tgtcacaagt agagggtgaa tgctcacttc aattgggcga cggatcttat ctggacttgt
     6841 ctgatgcaga cttgacggat cgggaaggct accttttgtc cttgctatct catcctcgaa
     6901 agcaggtcca gtcaagtccc tggcagtcct atctacaagg tcagggaagg attcctcaga
     6961 cagttgaggc cattcaattt atccatatcc acctttggtc acaaaaagaa gcccagttgg
     7021 atgcctggca ggccatgatg accgacctcc tgcccagtca actggctcag gtacagctga
     7081 cgcctcaaga ttatctcatt gtactggagc agggcacctg gatggatcat cagaccgttt
     7141 tacaggatac cctatcggcc ttggagtttg actttggctt gcggttgacc ctcttggttg
     7201 ggcaggtctg gcccaaacac gtctcagacc actggcctcg actctatcaa gcagaagccc
     7261 aactctttgc tcactggcgg gcacgctacc agcagtcagc cgtcctttcc tttagtcaac
     7321 tctttctttg gggacaaggc agagcaggct tggaacttag cctgataaaa gccagtatgc
     7381 tggagcttat tgatcagcaa gatatgcagg ctatcattct agccctatgg gcagaaggag
     7441 ctgtggttac caaggcagct caagtcctct atatccaccg caataccctc caataccgtt
     7501 tggaaaagtg gcaggatatg acagggctcc aactcaaaga cctgactgac ctgagttttt
     7561 gttatcaggt attattagat agacaatttt gatattttgt gcaacctgca cagaatatct
     7621 ttt
//
LOCUS       DASGAC010000104         7573 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.104, whole genome shotgun sequence.
ACCESSION   DASGAC010000104 DASGAC010000000
VERSION     DASGAC010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7573)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7573)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7573
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.104"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            138..626
                     /locus_tag="U1335_001548"
     CDS             138..626
                     /locus_tag="U1335_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEM5232014.1"
                     /translation="MQTKKMSMFLFFAYLLLLTWMIVFKMDLSIVYGRYGYASINLIP
                     FAGTAVYDGVLDFPEILFNIVSFIPFGIYMEMLFRKASWVANLCLIMLVSLCFEVLQY
                     LLLLGVADITDLLANGLGGAIGINIMYVLTSIWREKAYVRMNIFCFVLTFFVILIAYL
                     AM"
     gene            667..1794
                     /gene="queG"
                     /locus_tag="U1335_001549"
     CDS             667..1794
                     /gene="queG"
                     /locus_tag="U1335_001549"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HEM5232015.1"
                     /translation="MNIKEEIIKLSQEIGISKIGFTTADDFAYLEKSLRASQEEGRSS
                     GFEHKNIEERIRPKLSLQSAKTIISIAVAYPRHLPVKPQKTQYKRGKITPSSWGLDYH
                     YILQDKMERLARGIEKLTDGLEYKAMVDTGALVDTAVARRAGIGFIGKNGLVISKEFG
                     SYMFLGELVTNLEIEPDQPVDYDCGDCNRCVAACPTSCLLGDTTMNARRCLSFQTQDK
                     GMMDLEFRKKIKTVIYGCDICQICCPYNKGISSPPVVEIDPDLAEPELIPFLDLSNGQ
                     FKEKFGLIAGSWRGKNILQRNAIIALANSNDRSAIPKLLEIIDKKQNPVHMATAIWAL
                     GQLVKQPNDEMVSFIAGISSDNDDVIAEQTAFLNMVKDLQM"
     gene            1829..2924
                     /gene="prfB"
                     /locus_tag="U1335_001550"
     CDS             join(1829..1900,1902..2924)
                     /gene="prfB"
                     /locus_tag="U1335_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775232.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEM5232016.1"
                     /translation="MDTAEIRQKIEELGKKLTSFRGSLDLEGLEEEIAILENKMTEPD
                     FWNDNLAAQKTSQELNELKNTYGNFHQMLDLYDESEILLDFLAEDESVRDELVEKLAD
                     LDKTMTAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGEMLLRMYQRYGNAKGFTV
                     ETLDYQAGDEAGIKSVTLSFTGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFTSVE
                     VMPELDDTIEIEIRDDEVKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVTQSTVDRT
                     QYGNRDRAMKLLQAKLYQLEQEKKAAEVDSLKGDKKEITWGSQIRSYVFTPYTMVKDH
                     RTGYEVAQVDKVMDGDLDGFIDAYLKWRIS"
     gene            3067..3759
                     /gene="ftsE"
                     /locus_tag="U1335_001551"
     CDS             3067..3759
                     /gene="ftsE"
                     /locus_tag="U1335_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012130521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HEM5232017.1"
                     /translation="MGIIEMKDVSKKYGNGTTALRGVSVNVEAGEFAYIVGPSGAGKS
                     TFIKLLYREEKLDKGSLKVGKFDLAKIKKRDVPLLRRSVGVVFQDYKLLPKKTVFENI
                     AYAMEVIGEKPRNIKKRVMEVLDLVGLKHKIRSFPNELSGGEQQRIAIARAIVNNPKV
                     LIADEPTGNLDPENSWEIMNLLERINLQGTTILMATHNSQIVNTLRHRVIAIEDGRVV
                     RDEAEGEYGYDE"
     gene            3752..4681
                     /locus_tag="U1335_001552"
     CDS             3752..4681
                     /locus_tag="U1335_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5232018.1"
                     /translation="MSNRFFRHFIESLKSLKRNGWMTIAAISSVAITLTLVGLFASVI
                     LNTAKLASDLEQNVRINVYLRANSTDQAETIVNEAGETVANPDYQKVYNQITALENVQ
                     SVTYSSKDEQLQKLTATLGDTWNLFQGDANPLYDAYIIDTTEPQYVKTVAAEIAKIDG
                     VTEVRDGEVETERIFKLANLVRTWGLAATGLLLFTAVFLISNTIRITIISRSREIQIM
                     RLVGAKNSYIRGPFLWEGAWVGLLGAILPSVLVYSLYKMIYTSVNASLASQDLSLINM
                     NVFVPGMIGALFVIGIIIGSLGSVISMNRYLKI"
     gene            complement(4885..7029)
                     /gene="feoB"
                     /locus_tag="U1335_001553"
     CDS             complement(4885..7029)
                     /gene="feoB"
                     /locus_tag="U1335_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HEM5232019.1"
                     /translation="MTKHIALAGNPNSGKTTLFNLLTGTNQRVGNWPGVTVERKSGTI
                     KKRKHLLIQDLPGIYSLSPYTPEERVARDYLIADQPAAILNVLDATNLERNLYLTLQL
                     LEMGLPVVIALNMTDALKSQGRSINSDQLSYQLGVPVQPISALKKLGISQLLHEVEKI
                     TNQQAEPIYPQYDKQFEAGLAQVIDLLSDSIPNHQKRFYAIKLLEQDQVILDQLQLNA
                     QDMLDLTEIIAILEKIYADDMEAIIVNQRYQFIEKITELVTKDSDKTFNLSDNIDRLV
                     TNRFLALPIFAAVMWLTYFLSIQTVGTMGTDWVNDVLFGELVPGLIQENLDRFEIAGW
                     LQSLVLDGIIAGCGAILGFVPQIFVLFVCLGILEDIGYMSRVAFVMDRIFRRFGLSGK
                     SFIPMLISTGCGVPGVMASRTIENEQDRKITIMTATFMPCSAKLPIISLVAGAFFPDN
                     PWIAPSAYFVGMAAIVLSGMALKKTKQLGGVASPFIMELPSYHLPKLSTVLRYAFDKA
                     LSFIKRAGTIIFVTNIIIWFSSSYNWSLQMVETDESILASIGRSFSLLFAPLGFGNWR
                     ATVAAITGLLAKETVIATFGILYKLGETTEENPELWGLLQQDYTALSAYSFLVFNLLC
                     APCFAAIGAIHREMGEAKWTWIAIGFQTGLAYASSLVIYQIGLVLIYGQLPTVWTFIA
                     IFLIITAIYSLVKKPTNTLPIVTLKTLEKGEY"
     gene            complement(7026..7496)
                     /locus_tag="U1335_001554"
     CDS             complement(7026..7496)
                     /locus_tag="U1335_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HEM5232020.1"
                     /translation="MKLQNLQVGQSYLVKDCLTQDDIRKHLAHLGLKVGEEIRIISKT
                     KTNAIFQVKASRLALDREIIESLVLIEKSATEIINLSEAPIGSSAKVMDIYATGALRR
                     RLMDMGLTKNTQLFLKKVAPLGDPIEITLRGYELTLRKSEAQMIGVQITSEVRR"
BASE COUNT         2162 a         1342 c         1785 g         2284 t
ORIGIN      
        1 gtagtgtctt ccttttctgt ttttagtagg ctgtaaagta cttgtaatat ggaacgagct
       61 ttgtcacaga agtgacattt tatagaacag catttatgat ataatgataa aatatgctag
      121 ttgagaggag aatttctatg cagacaaaga aaatgagtat gtttttattt tttgcctatc
      181 tccttttact tacttggatg attgtcttta agatggactt gagcatcgta tatggccgct
      241 atggttatgc tagtataaac ttaattccgt ttgcaggaac agcggtctat gatggagtac
      301 tggattttcc agaaattcta tttaatattg taagttttat tccctttggt atttatatgg
      361 aaatgctatt tcgcaaggca tcgtgggtgg ctaatctatg tttgattatg ttagtgagtc
      421 tctgttttga ggttctgcaa tatcttcttt tacttggggt tgcagatata actgatttac
      481 tggctaacgg cttaggggga gcaatcggta ttaatatcat gtatgtcttg accagtattt
      541 ggcgggagaa ggcctatgtt cgtatgaata ttttttgttt tgtgctaacg ttttttgtta
      601 tattaatagc ttatttagct atgtaggtct tgctaaatat atccaaagtt tgctaaaatg
      661 aatgtaatga atatcaaaga agagattatc aaattatctc aggaaattgg gatttctaag
      721 attggtttta caacggcaga tgattttgct tatttggaga aatcacttcg tgctagtcag
      781 gaagaggggc gttcgtctgg atttgaacat aagaatattg aagaacgtat tcgtcccaag
      841 ctgtctttgc agtcagccaa aactatcatt tctatcgcgg tagcttatcc tcgacatttg
      901 cctgtcaaac cgcagaagac ccaatacaaa cgtgggaaga ttacccctag ttcatggggg
      961 cttgattacc actatatctt gcaagataag atggagcgtt tggcacgggg aattgagaaa
     1021 ctgacggatg gtttggaata caaggctatg gtagatacag gagctttggt ggatacagcg
     1081 gtcgctcgtc gtgcaggaat tggctttatc gggaagaatg ggctagtcat ttctaaggaa
     1141 tttggttcct atatgtttct aggagaatta gtgaccaatc tagaaatcga accagatcag
     1201 ccagtcgact acgactgtgg ggactgtaat cgttgtgttg cagcctgtcc gacgtcttgt
     1261 ctattaggtg atacgaccat gaatgcccgt cgttgcttgt cctttcagac ccaggataag
     1321 ggtatgatgg acttggagtt tcgtaagaaa atcaagacgg tcatctatgg ttgtgatatt
     1381 tgccagattt gttgtcctta caataaagga atttccagtc cacctgtggt ggagattgac
     1441 cctgatttgg ctgagcctga gctgattcca ttcttggact tgtcgaatgg acagttcaag
     1501 gaaaaattcg gtctgattgc tggttcttgg aggggaaaaa atattctcca gcgcaatgcc
     1561 atcattgcct tagctaatag caatgaccgc tctgccattc ccaaactcct agaaatcatc
     1621 gataaaaaac aaaatccggt ccacatggca acggctatct gggccttggg gcaattggtc
     1681 aaacagccca atgatgagat ggtttccttt atcgcaggta tttcatcaga caatgatgat
     1741 gtcatagcag agcaaacggc ctttctcaac atggtcaagg acttgcaaat gtgatataat
     1801 aaagattatg aataaaaatg aggtgtatat ggatacagca gaaattcgcc aaaagattga
     1861 agaacttggc aaaaaattaa cttcttttag ggggtctctt tgacttagaa ggtctagaag
     1921 aagagattgc cattcttgag aacaagatga cggagccaga tttctggaat gataatttgg
     1981 cagcccagaa gacgtctcag gagttgaatg aattaaaaaa cacctacgga aatttccatc
     2041 agatgttgga tttatatgat gaatccgaaa ttttgctaga ttttctagca gaagatgagt
     2101 ctgttcggga tgagttggtt gaaaagttgg cagatttgga caaaaccatg actgcttatg
     2161 aaatgacctt gctcttgtca gaaccctatg atcacaataa cgctatcttg gaaatccatc
     2221 caggttcggg tggtaccgag gcacaagact ggggagaaat gctcctgcgg atgtatcagc
     2281 gttatggaaa tgccaaaggt tttacagtag aaacattgga ttatcaagct ggtgatgagg
     2341 caggtattaa gtccgtgact ctaagtttta caggtccaaa tgcttatggt ttgctcaagt
     2401 ctgaaatggg tgttcatcgc ttggtgcgta tctcaccttt tgactcagca aaacgtcgcc
     2461 atacttcctt tacatctgta gaggtaatgc ctgagttgga cgataccatt gaaattgaaa
     2521 ttcgtgatga tgaagtcaag atggatacct tccggtcagg aggtgctggt ggacagaacg
     2581 tcaataaggt ttcaacgggt gttcgattga cgcacattcc gacagggatt gtgactcagt
     2641 ccacagttga ccgtacccaa tatggtaacc gtgatcgtgc aatgaaactc ttgcaggcta
     2701 aattgtatca attggagcag gagaagaaag cggcagaagt agactcactc aagggtgaca
     2761 agaaagagat cacttgggga agtcagattc gttcttatgt ctttacacct tatacaatgg
     2821 taaaagacca ccgtactggt tatgaggtgg ctcaagtcga taaggttatg gacggagact
     2881 tggacggctt tatagatgct tatttaaaat ggcgaattag ctaagaacct gtatttacaa
     2941 gtgaagtgct tgtaaataag agatagtttt tcgctcatca aggaagtttt ttgagagaat
     3001 actgactgta ttttgaaaaa aacgttctca aatctaaaga aaggactgtc taagacagga
     3061 aatcctatgg gaataataga aatgaaagac gtttccaaaa aatatggaaa cggaacgact
     3121 gcccttcgcg gagtatcagt caatgttgaa gcgggagaat ttgcctacat tgtaggtcct
     3181 tctggtgcag gtaagtcaac ttttatcaaa ctcttgtatc gggaggaaaa gctcgataag
     3241 gggagtctaa aggttggtaa gtttgacctt gcaaaaatta aaaagagaga tgttcctctt
     3301 ctacgtcgta gtgtaggagt ggttttccaa gactacaaac tcttacctaa aaagactgtc
     3361 tttgaaaata ttgcttatgc gatggaagtt atcggtgaga aaccacggaa tatcaagaaa
     3421 cgtgtaatgg aagttttaga tttggttggt ttgaaacaca agattcgctc tttcccaaat
     3481 gaactttcag gtggtgagca acagcggatt gctattgccc gtgccattgt aaataatcct
     3541 aaagtattga ttgctgatga accaactggt aacttggacc ctgaaaactc ttgggaaatc
     3601 atgaatctat tggagcgaat taacttacag gggacaacga ttttgatggc gacacataat
     3661 agtcagattg taaatacact tcgtcaccgt gttattgcga ttgaagatgg tcgtgtagta
     3721 cgtgatgaag cggaaggaga atatggatac gatgagtaat cgatttttta gacactttat
     3781 tgagtcattg aagagtttga agcgaaatgg ttggatgacg attgcagcca tttcatctgt
     3841 agccattacc cttaccttgg ttggtctatt tgcttcagtt attttgaaca cagcaaagct
     3901 cgcttcggat ttggaacaaa atgtacgtat caatgtatac ttgagagcga actcaactga
     3961 tcaagctgag acgattgtga acgaagcagg agagacggta gctaatccag attatcaaaa
     4021 ggtgtacaat cagattacag ccttagaaaa tgtacaatct gttacttatt caagtaagga
     4081 tgaacagttg cagaaattaa cagctacctt gggagatact tggaacctat tccaaggaga
     4141 tgccaatcca ctttatgatg cttatatcat tgatacgact gaaccgcagt atgtaaaaac
     4201 tgttgcagca gagattgcta aaattgatgg tgttacagag gtacgcgatg gggaagttga
     4261 aacagaacgt atttttaaat tagctaatct agttcggact tggggattgg cagcaactgg
     4321 cttattgctg tttactgctg ttttcttgat ttccaatact attcggatta ccattatttc
     4381 tcgtagccgt gaaattcaga ttatgcgtct ggttggtgct aaaaacagtt atatccgtgg
     4441 accattcctc tgggaaggtg cctgggtagg tctcctcgga gctattttgc cttctgtttt
     4501 agtctattct ctttataaga tgatctatac ttcagtaaat gctagtcttg ctagtcaaga
     4561 tttgtctctg attaatatga atgtctttgt tccaggaatg attggcgcac tttttgtaat
     4621 tggtattatt attggttcct tgggatcagt catttccatg aaccgctact taaaaattta
     4681 atagacaagc tacatgtaaa aaggtctgca cataatgagg cagacctttt tgttatggat
     4741 gtctatggtg agaagattcg ttcatctctt gcttaatagt acagttgcag gaacaatctc
     4801 cgcaagatcc ttttcctttg atgagactgc gaatcgcaag agaaaataag atgacgatga
     4861 tgagaaagag gataagtgtg ggcattaata ttctcctttt tctaatgttt ttagcgtgac
     4921 gattggaaga gtattggttg gttttttcac taggctgtag atggctgtga taattagaaa
     4981 gatagcgata aatgtccaga cggtcggtaa ttgtccgtag ataagtacaa gaccaatctg
     5041 atagataacc aaactacttg cataggctaa acctgtttgg aaaccgatag caatccatgt
     5101 ccacttggct tctcccattt cacggtgaat ggcaccaata gccgcaaaac aaggggcaca
     5161 gaggagattg aagactagga aggagtaggc tgataacgct gtatagtctt gttgtaaaag
     5221 cccccagagt tcgggatttt cttcggttgt ttctcctaat ttatagagga taccaaaggt
     5281 ggcaatgacg gtttccttgg ctaagagacc tgtaatggct gcaacagttg ctcgccaatt
     5341 tccgaaacca agtggggcaa agaggagaga aaaactgcgt ccaatggagg ctaagatact
     5401 ctcatctgtt tctaccattt gtaaagacca attataggaa ctgctgaacc aaataatgat
     5461 gttggtcaca aatataatgg taccagcccg tttgataaaa ctaagtgcct tatcgaatgc
     5521 atatcggaga accgtactga gttttggtaa gtgataagat ggtaattcca tgataaaggg
     5581 gcttgcgact ccaccgagct gcttggtctt ttttagtgcc attccggata ggacgatggc
     5641 agccataccg acaaaatagg cgcttggagc aatccaagga ttgtcaggaa agaaagcacc
     5701 ggctaccagc gaaatgatag gaagtttggc agaacagggc atgaaggttg ctgtcataat
     5761 ggtgattttt cggtcctgtt cattttcaat agtccggctt gccatgactc caggaacgcc
     5821 acagcctgtg gaaatcaaca tgggaataaa ggatttgcct gatagaccaa aacgcctaaa
     5881 aatcctatcc atgacaaagg cgactcggct catatagccg atgtcttcca agattcccaa
     5941 gcagacgaag aggacgaaaa tttgtggtac aaaaccgagg atggctccgc atcctgcaat
     6001 aatgccatca aggaccaggg attgtagcca gccagcgatt tcaaatcgat ctagattttc
     6061 ctgaataagg cctggaacaa gctctccgaa gaggacatca ttcacccagt cagtccccat
     6121 tgtaccaacc gtttgaatag acaggaagta ggtcagccac atgactgccg caaagatagg
     6181 gagggcaaga aaacgattgg taacaagtcg gtcgatgtta tcagacaggt taaaagtctt
     6241 atcgctgtct tttgtgacca gttctgtgat tttctcgata aattggtagc gttgattaac
     6301 gataatggct tccatatcgt ctgcgtaaat tttttccaaa atggcaatga tttcggtcaa
     6361 atcaagcatg tcttgtgcat ttagttgcaa ttggtctaga atgacttgat cttgttcgag
     6421 tagcttaatg gcgtagaagc gtttttgatg atttgggatg gaatccgata ataggtcaat
     6481 aacttgggcg aggccagctt caaattgttt gtcatactga ggatagattg gctcagcttg
     6541 ttgattggta attttttcta cttcatggag gagctgggat atacctagct tttttagtgc
     6601 actgataggc tgtacaggaa ctcccagttg ataggagagc tggtcgctgt ttattgagcg
     6661 accttgactt ttcagggcgt ctgtcatatt gagggcgata acaacaggaa ggcccatttc
     6721 taataactgc aaggtcagat agagattccg ctccaagttt gttgcatcaa ggacgttgag
     6781 gatagcagct ggttggtccg ctatcaaata atctctggca actcgttctt ctggtgtgta
     6841 gggagacagc gagtagatac ctggtaaatc ttgaattagt aaatgttttc gctttttgat
     6901 cgttccagat tttctttcaa cggtgactcc gggccagtta ccaacacgtt ggttggtccc
     6961 tgttaggagg ttgaaaagcg ttgtttttcc gctatttgga tttcctgcaa gggcgatgtg
     7021 ttttgtcatc tcctcacctc gcttgtgatt tgaacaccaa tcatttgcgc ttcggatttg
     7081 cgtagtgtca gctcgtatcc tctcaaggta atttcgattg gatcgcccag gggagcgact
     7141 tttttgagaa atagctgcgt gttctttgta agtcccatat ccatgaggcg acgacggagt
     7201 gcacctgttg catagatgtc catgacctta gctgagctac caataggtgc ctcagataga
     7261 ttgattattt ccgtagctga cttttctatt aaaaccagag attcgataat ttctctgtct
     7321 agggctagac ggcttgcctt gacttggaaa attgcattgg tcttggtttt tgaaatgatg
     7381 cgaatctctt ctccgacttt taaacccaag tgcgctaagt gtttacgaat atcatcttgc
     7441 gttagacaat ctttgactaa ataagattgt ccaacttgaa ggttttgcag tttcatatcg
     7501 tttcctttgt gatttttata acaatagtat agcacaattc cttaaaagtg tcagataatt
     7561 tttaggaatg gct
//
LOCUS       DASGAC010000105         7515 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.105, whole genome shotgun sequence.
ACCESSION   DASGAC010000105 DASGAC010000000
VERSION     DASGAC010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7515
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.105"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..505)
                     /locus_tag="U1335_001555"
     CDS             complement(<1..505)
                     /locus_tag="U1335_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012962642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpiB/LacA/LacB family sugar-phosphate isomerase"
                     /protein_id="HEM5232021.1"
                     /translation="MRVVVIQASTRTEINQLLFDTVCEVVDGHHDVINLGVFPEEIEN
                     YTYVEVAVMISLLIETNAADFIVTGCSSGQGMMMACNSLPGLRCGFVQTPQDAYLFGR
                     INNGNVVSLPLGLNFGWSGELNLRYTLEKLFDGDFNTGYPVQDAERKKKEATELVHLH
                     RLTTRSFL"
     gene            complement(835..1161)
                     /locus_tag="U1335_001556"
     CDS             complement(835..1161)
                     /locus_tag="U1335_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5232022.1"
                     /translation="MKKVSEYGICPFATTQKVLTGKWGLVIIYQLSTGTKRFNELQRL
                     IPGITQTMLTRHLRQLEEDRIISRTVYAEVPPRVEYSLTEMGEKFRSVLDSVEAWGLE
                     YIETLT"
     gene            1287..1676
                     /locus_tag="U1335_001557"
     CDS             1287..1676
                     /locus_tag="U1335_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000106206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEM5232023.1"
                     /translation="MSTNLEIFNAYNNALIAGDFAALFETMADDIIWHQPGNHSASGA
                     KIGKEVLGAHLATFAEKTNGTFKVVTNWVSDNDTLVAANVTFLGTRTDGEELNMNGID
                     LFRMEDGKIKEVWLFSADQTAEDAFWG"
     gene            complement(1719..2843)
                     /gene="mnmA"
                     /locus_tag="U1335_001558"
     CDS             complement(1719..2843)
                     /gene="mnmA"
                     /locus_tag="U1335_001558"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006153390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEM5232024.1"
                     /translation="MSIDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD
                     TDENGFCTATEDYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGHTPNPDV
                     MCNKEIKFKAFLDYAMNLGADYVATGHYAQVSRDEDGTVHMLRGADNGKDQTYFLSQL
                     SQEQLQKTMFPLGHLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLPA
                     QPGRMMTVDGRDMGEHTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVG
                     QGFYHESLMSTSLQASQVHFTRDMPEEFTLECTAKFRYRQPDSQVTVKVKGDKAEVIF
                     AEPQRAITPGQAVVFYDGQECLGGGMIDMAYKDGEACQYI"
     gene            3059..3730
                     /gene="sdaAB"
                     /locus_tag="U1335_001559"
     CDS             3059..3730
                     /gene="sdaAB"
                     /locus_tag="U1335_001559"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent
                     subunit beta"
                     /protein_id="HEM5232025.1"
                     /translation="MSNLKFQSVFDIIGPVMIGPSSSHTAGAVRIGKIVSSIFGDEPT
                     EVEFQLYNSFAKTYRGHGTDVALVAGILGMDTDDPRIPDSLDIARERGIKVYWRVNKD
                     SNTPHPNTTRIIIKNDKKSISATGVSIGGGNIQVTELNGFSVNLNMNTPTIIIVHQDV
                     PGMIAKVTDILSKYNINIAQMNVTREQAGEKAIMIIEVDARQCENSIAEIEKIPHLHN
                     VTFFN"
     gene            3743..4615
                     /gene="sdaAA"
                     /locus_tag="U1335_001560"
     CDS             3743..4615
                     /gene="sdaAA"
                     /locus_tag="U1335_001560"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent,
                     subunit alpha"
                     /protein_id="HEM5232026.1"
                     /translation="MFYTVKDLVQQAEQFSGNVAELMIATEIELTGRSREEILTIMSR
                     NLTVMKASIVDGLTESKSVSGLTGGDAAKLDAYMKKGKTLSDSSILSAARNAMAVNEL
                     NAKMGLVCATPTAGSAGCLPAVLGVAIDKLKLSEEQQLDFLFTAGAFGLVIANNASIS
                     GAEGGCQAEVGSASAMSAAALTLAAGGSPYQASQAICFVIKNMLGLICDPVAGLVEVP
                     CVKRNAMGASYAMVAADMALAGIESKIPVDEVINAMYQVGSALPTAFRETAEGGLAAT
                     PTGRRLAQEIFGEN"
     gene            complement(4653..5258)
                     /locus_tag="U1335_001561"
     CDS             complement(4653..5258)
                     /locus_tag="U1335_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232027.1"
                     /translation="MENNNQQQEIIEVAENKKTGVWESVKQKVTGMSKKSIILLSVGA
                     LALVTAGFVAAEVYENKLEALGDQIERQVGIGDDDDNQQVIAQANASSASSVNTTSAS
                     QLATSYGVKLVDTSELDGTYTATSGNDTYTLTVKGNQATLTEVDNDGDQDIEQVIFDL
                     DKKLAYIDGEADTYALNGTTLTLTEIDANDTTLDKLTFTKQ"
     gene            complement(5370..6038)
                     /locus_tag="U1335_001562"
     CDS             complement(5370..6038)
                     /locus_tag="U1335_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5232028.1"
                     /translation="MTRILIAEDDVEIAYLERDYLEMQGYQVDLIHDGGLVEDQLKKE
                     DYALLMLDVMLPNKTGYDLCRDLRDKVDFPILMVTSKQETMDVVRGLGLGADDYISKP
                     FDPMELVARVKAHLARYQRFQKDNDQNELTVGNMTIFLDNWKVTLDGQEIKLPNREFE
                     LLVYLAKHPNRVFSKDHLFETIWGYDYVGDSATVAVHVNRLRDKLGADLIETVWGAGY
                     RLND"
     gene            complement(6035..7418)
                     /locus_tag="U1335_001563"
                     /pseudo
     CDS             complement(6035..7418)
                     /locus_tag="U1335_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941829.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
BASE COUNT         2192 a         1725 c         1371 g         2227 t
ORIGIN      
        1 ccaaaaaaga gcgtgttgtc aaccgatgaa gatgcactaa ttcagttgct tccttctttt
       61 tacgttcagc atcttgaact ggataacctg tattaaagtc tccatcaaat agtttttcta
      121 aggtataacg caaattcaac tcgccagacc aaccaaaatt taagcctagt ggcaaagaaa
      181 ctacattgcc gttgttaatc cgaccaaata gataggcatc ctgaggtgtt tgcacaaagc
      241 cacaacgtaa accaggcaaa ctattgcaag ccatcatcat tccttgtcca gaagaacacc
      301 ccgttacaat aaaatcagct gcatttgttt caatcaacag actaatcata acagctactt
      361 ccacataggt gtagttttct atttcttctg gaaacacgcc tagattaata acatcatggt
      421 gtccatccac tacctcacaa actgtgtcaa acaggagctg gttgatctca gttcttgtac
      481 tagcttgaat aactacaaca cgcattttcc cctcctttac acatctgtca attagattga
      541 caagctactc cttaatcaaa aatcgaagac ctttcgattt caagaacagt tttacatcat
      601 ctgtcatcaa taacactgtt ccatcaatcg tttttagatt aggaaactga ctcagttctg
      661 attctgaaat ttttgtaata tcaaaaaggt catcttctct ccccaatagt aaaaaatagc
      721 caaaactctc gaaaattgca ggacaaaaaa gcctacaatt cccatgagct ttgaccatca
      781 tgatgattgt tacccttatt ctatcaaaag atttgtagaa tttcaaatct ggtgttacgt
      841 taacgtttca atatattcta agccccaagc ctcaacagaa tccagcaccg accgaaattt
      901 ttcgcccatt tcggtcaagc tgtactctac acgagggggg acttctgcat agactgtacg
      961 actaataatg cgatcctcct ccaattgtct aaggtgcctt gttaacatgg tttgggtaat
     1021 ccctggaatt agtcgctgta attcattgaa gcgtttcgtt cctgtactga gttggtagat
     1081 aatcaccaat ccccacttac cagtcaagac tttttgcgtt gttgcaaaag gacaaatacc
     1141 atattcacta acttttttca aaaaaattct cctttattta tcacaatagt atcacttttg
     1201 atactaacaa atgcaaaagt acctacttgc ataattgatt gattagacta taattgtact
     1261 atatcaaaaa aattggagga catcaaatgt caacaaactt ggaaattttt aatgcctata
     1321 acaatgctct catcgctggt gattttgcag ctctttttga aactatggct gacgacatta
     1381 tctggcatca acccggaaat cattcagcat ctggtgctaa aattggtaaa gaagtactcg
     1441 gagcacatct agcaactttc gccgaaaaaa caaatggaac tttcaaagta gtgacaaact
     1501 gggtgtcaga taatgatact cttgttgccg ctaacgtaac attcctcggt actcgaacag
     1561 atggtgaaga actaaacatg aatggtatcg atcttttccg tatggaagat ggcaaaatca
     1621 aggaagtttg gctcttctca gccgaccaaa ccgccgaaga tgctttctgg ggataagata
     1681 aaaagctcag cacgagggtg ctaagctttt atttttgatt aaatatactg acaagcctct
     1741 ccatctttat aggccatgtc gatcatgcca ccgcccagac actcttgacc gtcgtagaaa
     1801 acaacggctt gtcctggtgt gatagctcgt tgtggctctg caaaaataac ttctgccttg
     1861 tcccctttta ccttgacagt cacttgactg tctggttgac ggtagcggaa cttagctgta
     1921 cactcaagtg tgaattcttc aggcatatca cgtgtaaagt ggacttgact agcttgtaaa
     1981 gaagttgaca tcaaggactc atgatagaag ccttgaccga catagagaat attttttgac
     2041 aggtcttttc cgacaacaaa ccaaggctcg ttgtccccac cgatttgtcc gccgatacca
     2101 agcccgcccc gctgaccaat ggtatagtac atgaggcctg tatgctctcc catatcacga
     2161 ccgtcaacgg tcatcatccg accgggctgg gctggcaaat actgccctag aaattctttg
     2221 aagttcttct ctccgataaa gcagatgcct gtcgaatctt tctttttagc ggtcgccaag
     2281 cctgctcgct ctgcaatttc cctaacctga ggcttttgta aatggccgag cggaaacatg
     2341 gttttctgca gctgttcctg tgatagttgg ctaaggaaat aggtctggtc cttgccattg
     2401 tctgccccac gtagcatatg gacggtaccg tcctcgtcgc gtgacacctg agcataatgc
     2461 cccgtcgcca catagtccgc acccaagttc atagcgtaat ccaagaaggc cttgaacttg
     2521 atttccttgt tacacatgac atctggattg ggtgtgtggc ctgcccgata ctctgctagg
     2581 aagtactcaa atacgcggtc ccaatactct ttttcaaagt tgacagagta ataaggaatg
     2641 ccgatttggt ctgcaacagc agccacatcc ttataatctt ctgttgctgt acagaagcca
     2701 ttttcatccg tgtcatccca gtttttcatg aagataccga tcacatcgta gccctgctcc
     2761 ttgagcaaaa gagccgtaac cgatgaatcc acaccaccac tcataccgac aacaacacgg
     2821 gttttagaat tgtcaattga cataatcttc tcccatcttt tcgtagaaat aacgatttga
     2881 aggtcgtatt ccaaaatttg attatccaaa aacgattgac gattttgaac aacttgtatt
     2941 ataccataca aaaagggtaa gcgatagaat tttaacataa gaaaacacat tcatctaggc
     3001 atattccctg actagaaaat ttggtataat aagggtaaga aaaaatacga ggaaaattat
     3061 gagcaactta aaatttcaat cggtctttga tattatcggg cctgttatga ttggtccttc
     3121 ctctagccat acggctggag cggtccgcat tgggaaaatt gtgtcttcca tctttggtga
     3181 tgaaccaacc gaggtcgaat ttcaactcta caattctttt gccaaaacct atcgtggaca
     3241 cggtacggat gtagccttgg tagcaggtat tttaggcatg gatacagacg acccacgcat
     3301 tcctgactct cttgatattg caagagaacg aggtattaaa gtctactggc gtgtcaacaa
     3361 ggacagcaat acccctcatc ccaataccac acgaatcatc attaaaaatg acaaaaagtc
     3421 catatcagca acgggagttt cgattggtgg gggtaatatt caagtaacgg agctcaacgg
     3481 cttttctgtc aacttgaata tgaatactcc gacaattatc atcgttcacc aagacgttcc
     3541 aggtatgatt gccaaggtaa ctgacatctt atcaaaatac aatatcaaca ttgctcaaat
     3601 gaacgtgacc cgtgaacaag ctggcgaaaa agccattatg attattgaag ttgatgctcg
     3661 ccagtgtgaa aattccattg cggaaatcga aaaaattcct catttgcata atgttacctt
     3721 cttcaactag aaagaggaga atatgtttta taccgtaaaa gatttggtcc aacaggcaga
     3781 gcagttttct ggcaatgttg ccgaactcat gattgcgacc gagatcgaat tgacagggcg
     3841 tagccgagaa gaaatcttga caattatgtc aagaaacttg acagttatga aagcgtcgat
     3901 tgtcgacggc ttgacagaaa gtaaatcagt gtcaggtttg acaggtggtg atgctgccaa
     3961 gttagatgcc tatatgaaaa agggcaagac actgtctgat tcctctatcc tatccgcagc
     4021 aagaaatgct atggctgtca acgagttgaa cgcaaaaatg ggcttggtct gtgccacccc
     4081 aactgctggt tctgctggtt gtttgcctgc cgttcttggt gttgctattg acaagttaaa
     4141 attgagtgaa gagcaacaac ttgacttcct ctttacagct ggagccttcg gtctagtcat
     4201 tgccaacaat gcctccatct ctggagcaga aggaggctgt caggcagaag ttggctctgc
     4261 ctctgctatg tccgcagcgg cactaacact tgctgctgga ggaagtccct atcaagccag
     4321 ccaagccatc tgctttgtca tcaaaaatat gttaggcctc atctgtgatc ccgttgcagg
     4381 tctggtagaa gtcccatgtg tcaaacgaaa tgcaatggga gcaagctatg ccatggttgc
     4441 tgctgatatg gcactggcag gaattgaatc aaaaattcct gtagatgagg ttatcaatgc
     4501 catgtaccaa gtgggttctg ccctaccaac cgccttccgt gaaactgccg aaggaggcct
     4561 ggctgctaca ccaactggtc gccgattggc acaagaaatc ttcggagaaa attgacaagg
     4621 ttgtaaacga aaaggaccgt ttggtccttt tcttattgtt tggtgaaagt gagtttatct
     4681 agagttgtat cattggcatc aatttctgtc aaggttagag tagtaccatt tagggcatat
     4741 gtatctgctt ccccgtcaat ataggcaagt tttttatcta agtcaaaaat cacttgttca
     4801 atatcctggt ccccatcatt gtcaacttct gtcaaggttg cttgattccc ttttacagtc
     4861 aacgtgtagg tgtcatttcc agatgttgct gtataagtac catctagctc agaggtgtca
     4921 actaacttta caccgtaact tgttgctagt tgactagcag aagttgtatt tactgatgag
     4981 gctgatgatg cattagcttg tgctattacc tgttgattgt catcatcatc tccaattcca
     5041 acttgtcgct caatttgatc tcctaatgcc tctagtttat tttcataaac ttctgctgcg
     5101 acaaaaccag ccgtcacaag tgccaaggca cctaccgaca ataagataat cgatttctta
     5161 ctcatgcctg taaccttctg tttgactgat tcccaaacac ctgttttctt attttctgcc
     5221 acttcaataa tttcttgttg ttgattgtta ttttccattt tgtcctcttt ttaacttgtt
     5281 ttcttcagct cttgctgata agtctattat agaggatagg ttttaacact ttagagaaac
     5341 tttctaaaca aattctaaac acttataaat taatcattaa ggcgatagcc tgctccccag
     5401 acagtctcaa tcaaatccgc tcccaattta tctcggagcc gattgacatg aacagcaact
     5461 gtcgcactat ctccaacata gtcatatccc caaatggttt caaacaagtg atctttagag
     5521 aatactcgat tagggtgttt tgctagataa accagcaatt caaattcacg attgggcaat
     5581 ttgatttcct gaccatccaa agtcaccttc caattatcca agaaaatagt catattccca
     5641 actgttaatt cattctgatc attatccttt tgaaaacgct ggtagcgagc caaatgagcc
     5701 tttacacgcg ccaccaactc catgggatca aaaggtttgc tgatgtaatc atccgctccc
     5761 aagcctagcc ctctcaccac gtccatagtt tcttgcttgg atgtaaccat caaaataggg
     5821 aagtccacct tatcccgtaa atcacgacaa agatcgtagc cagttttatt tgggagcatg
     5881 acatccagca ttaaaagagc ataatcctct tttttgagtt ggtcctctac aagaccaccg
     5941 tcatgtatca aatctacttg gtagccctgc atttccagat aatctcgctc caaataagca
     6001 atctctacat cgtcttctgc gattaaaatc cgtgtcattt catatccttt ctaggtagtc
     6061 taaagataaa tcgaagtcct agagttgcct caacagatac ctggccatcc agtctctcca
     6121 taatattttt tacaatcgct aaccccagac catggccttc tacttgctgt ctggtatcgt
     6181 ctgccctgta aaattcttca aaaatcaagt caaatctatt cttttctaca ccttttccgt
     6241 tatctgtaaa agtccaaaca acttcttgct cttgcatttg tccagtaata ctgattatca
     6301 gggactttac agcggcatat tttcgtgcat tgtccaccaa attatctaga attctacgaa
     6361 attgaattgg atcaatctca actggcaatc catccgatac ttccaaacta aaccgaatgt
     6421 cctcatctac taattcctca gttttctctc ttacatagga ctgtaaaaag atagccaaat
     6481 caagcttgac tttatcaaat ggcattttat ctgtctgcaa ttgtgaaaaa gcaaataatt
     6541 tttccagtaa tttctccatc acctaagatt tttgatagat aacagtcaaa tactgattac
     6601 gtttttcgtc cgtattggca ataccatcca aaattccctt ggcataacct ttgatagaag
     6661 tcaagggagt ccgcaaatca tacgaaatat ctgcgaccat ctgggttcga ttttgttcat
     6721 acagttgatt tttctcacgg gcatctaaca aagaagtctg catttgattg aacccttggg
     6781 tcaattcttc aaattcctta tcaccttgat aggtcagagg tactgtataa tctccctgct
     6841 ggatacgttc tacaccgctg tgcaattcct ccagaggacg catgataacc cctaggagac
     6901 ggcgagtaaa gaagaagtta agcaccacta cgaccacgat acctattcca ccaactaaca
     6961 aaagctgtat caggaaggct tgaaattctt ggctttcttt ctggtcttcc aaatcttcta
     7021 acaaggcata taaataataa acttgcccat ccgtggcgag tttacggcta atcacaattt
     7081 ctccatctac ataggaggtg tgagtggttg atgatactgt cactcccaat atctcatccg
     7141 catcatcttt cagatttgaa aagacagcct caccattact ttctacatag agtcgtgcat
     7201 cattcgatgc taactcatct gccagtactg caaaatctga tcccgaaaac ttttccaaac
     7261 tctgttgact acttgctgtc ttctggctag tggactgcca tgtttcctgg ttacgataaa
     7321 tgctattaac cacataaaca cttaccccca gcatagcaac caaggaaaaa aataagcata
     7381 atcgtattta atcgaaaaat tcgtttttgt aatttcatag ttcttctttt ctagtcaatt
     7441 ttttcacaat tataaacaaa acaaccttat ctgtaaagct agacaacttt caacaataga
     7501 aaaaagtcta gcatc
//
LOCUS       DASGAC010000106         7372 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.106, whole genome shotgun sequence.
ACCESSION   DASGAC010000106 DASGAC010000000
VERSION     DASGAC010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7372
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.106"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..136
                     /locus_tag="U1335_001564"
     CDS             <1..136
                     /locus_tag="U1335_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000564846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ISAs1 family transposase"
                     /protein_id="HEM5232029.1"
                     /translation="IRKVCLHLLQNMTFPKEKLSYRRKQRYISVHLEDYLPQLFGARG
                     "
     gene            330..2015
                     /locus_tag="U1335_001565"
     CDS             330..2015
                     /locus_tag="U1335_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018375623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase/lipase family protein"
                     /protein_id="HEM5232030.1"
                     /translation="MKKIVYFLLSLLGLSLFVACGQSKGATTTPFKNDITKTISSGEV
                     KGKKDSTTATIEWLGIPYAAEPVGELRWKAPQPVEKWEGSFDATEIGSPFIQISKGEV
                     VGSEGALNLDVVRPDNTEANLPVIVFLHGGNNQTGHAQEIKGNGFVNDINAVYVSINY
                     RLGALGFNPLEALKTGTDEENSGNYTLLDIAAALDWVEENIEVFGGDKDNVTLAGFSA
                     GGRDVMATLISPLFKDKYDKAISFSGGMTLADETDSQDIFATAIAPLVVEDGIKSTEL
                     EAKEWLLSNDRQVADYLYGLPAERLASLMGNAGIRMSVFPHLYKDGVVIPKEGFDTSN
                     YNDVPLLLITGTSEFSLFTAFDPYFANSVTDGSLFSDADKLKEFIFTESYGSALYRLS
                     NTVDSARKLQGTYKSPIYIGEISYGDNTETAPKTAQLLGAFHGVFEPLLQQPSNYAPF
                     IGEDFNSEGAKQLSQQFKAYLKGFITSSNPEGEDLPQWEEWTADGSQVMKFDASLEKA
                     EIEMSEDSQTAEDIVANLRSDSALSADKKQVLIDNVLNGRWFSQPLDGLKVNE"
     gene            complement(2129..2458)
                     /locus_tag="U1335_001566"
     CDS             complement(2129..2458)
                     /locus_tag="U1335_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEM5232031.1"
                     /translation="MITMHLYYTGPADNARAFAQEMEASGIADRIRQQAGNTRYQYFA
                     PLDDPHSILLVDSWTDQAALDIHHASPMMQEILDLRSKYQLTVTAERYKSDEAGIPER
                     DKDFLQR"
     gene            complement(2708..3622)
                     /locus_tag="U1335_001567"
     CDS             complement(2708..3622)
                     /locus_tag="U1335_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM5232032.1"
                     /translation="MQPPLTDKQFKHAIDYDSRLLPYKYYHTCVMDGIPDILFHWHNE
                     FEINYVYGGTARYHIDYDYFNSQAGDIILMRPNALHSIHPIEQRGHETDTLLFHLDML
                     GASHLDQTSMLYLQPLQTDVFKCIPRIQPQDPGYAEIRQCLLTIFELVRHQPPYFELP
                     LKSRLFDFFYLLYRYRYIVRKNTDDMYRKNEKLRLLIEYIQQHYAENLTIEQLAEQMG
                     YTKTHFMTIFKQQTGTSCMEFIIQVRLRAATELLTNTLKPVLEIATEVGFNNLSNFNR
                     QFKQYYHTTPSSYRKQLRKNRAYTNFNK"
     gene            3734..5218
                     /locus_tag="U1335_001568"
     CDS             3734..5218
                     /locus_tag="U1335_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000110363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HEM5232033.1"
                     /translation="MSRFPKNFLWGGAIAANQAEGAYNVDGRGLVQTDVTTGGSVNSP
                     RYTTYIDKDGKPGKYASMGHAGGHLPEGATYAVLEDHYYPNHKAVDFYHRYKEDIKLF
                     AEMGYSVFRLSISWARIFPNGDDAEPNQAGLDFYRSVFEECRKYGIEPLVSIWHFDTP
                     LSLEQRYGGWKNRKLVDFYVKYAETIFKEYKGLVKYWLTFNEINGGIMFLDLFGDEMT
                     DQDYQDAYQSLHHQFVASAKAVQIGHEIDPEYKIGNMICGITFYPGTCDPADILANQH
                     AWEQNIYYCGDVQAKGKYGTYAKRLWAEHNVVVEMAEDDLEVLAKGKVDMYTFSYYMS
                     TVVTTHKSEDTVAGNFSAGAKNPYLTYSDWGWAHDPSGLQYYLEKMYDRYEIPLMVVE
                     NGLGAFDTVEEDGSIHDDYRIDYHRAHVNAMADAIANGVDLIGYTTWGCIDLVSAGTG
                     EMRKRYGFIYVDMDDAGNGTLARTPKDSFYWYKKVIASNGEDVE"
     gene            5652..7085
                     /locus_tag="U1335_001569"
     CDS             5652..7085
                     /locus_tag="U1335_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002358345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM5232034.1"
                     /translation="MSKLPKNFLWGGAVAAHQLEGGWQEGGKGISVADVMTAGRHGVP
                     REITAGVLEGKYYPNHEAIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPKGDELEP
                     NEAGLQFYDDLFDECLKYGIEPVVTLSHFELPYHLVTEYGGFRNRQTINFFVRFAETC
                     FRRYKDKVKYWMTFNEINNQANYQEDFAPFTNSGIVYQEGENREAVMYQAAHYELVAS
                     ARAVKIGHEINPDFQIGCMIAMCPIYPATCKPSDILMAQKAMQKRYYFADVHVHGFYP
                     EHILRYWERKGISVDFTEKDREDLLEGTVDYIGFSYYMSFAIDSHRENNPHYDYLETE
                     DLVKNTYVKASDWEWQIDPEGLRYALNWFTDMYHLPLFIVENGFGAIDQVEEDGMVHD
                     DYRIDYLGAHIKEFIKAVDEDGVDLMGYTPWGCIDLVSAGTGEMRKRYGFIYVDKDDE
                     GNGSYARSPKRSFAWYKNVIATNGEEV"
     gene            7167..>7372
                     /locus_tag="U1335_001570"
     CDS             7167..>7372
                     /locus_tag="U1335_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000580385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SemiSWEET transporter"
                     /protein_id="HEM5232035.1"
                     /translation="MVGIIAACLTTFGFVPQVIKVVKTKDTESISLGMYMMSVTGMSL
                     WLFHGIIQGDTALIIANSLSVTLAG"
BASE COUNT         2205 a         1295 c         1710 g         2162 t
ORIGIN      
        1 tattcgtaaa gtttgtcttc atcttttaca aaatatgaca ttccctaagg agaagctgag
       61 ttaccgtcgt aaacaacgct atatttctgt ccatttagag gattatttgc cacaattatt
      121 tggggcaaga ggataaggtg cttgtataaa ggtagatact aagtttaaag cagttatttc
      181 cggggacaaa aggagataag aaatttttca tgcgtatgac gtgatgctaa tcagaacgta
      241 ctttccacgg attttgcgaa tatattagta tttatttaga ttttattttg aagaaaaatt
      301 taggtatatt aacatgcgga ggtaagtaaa tgaaaaagat tgtctatttt ttactgagct
      361 tactgggttt aagtctattc gttgcttgtg gacaaagtaa gggagcaaca actacaccat
      421 ttaagaatga catcacgaaa acaatcagta gtggtgaggt aaaggggaaa aaggatagta
      481 cgactgctac aattgaatgg ttaggaattc cctatgcagc ggaaccagta ggtgagctac
      541 gttggaaggc gccacagcct gtcgaaaaat gggaaggtag ttttgatgca actgaaatcg
      601 gatctccttt tatacaaatc tcaaaagggg aagtagtcgg ttcagaagga gcgctaaatc
      661 ttgatgttgt tagacctgat aatacggagg ctaatctacc agtgattgtt tttctgcatg
      721 gaggaaataa tcaaacaggt catgcacaag aaatcaaagg aaatggcttt gtaaatgaca
      781 tcaatgccgt ttatgtttca atcaattatc gcttgggcgc tcttggtttc aatccgttgg
      841 aagcacttaa gacaggaacc gatgaagaaa attctgggaa ttatactctc ttagacattg
      901 cggcagcatt ggattgggtg gaagaaaaca tcgaggtctt tggtggtgat aaggataatg
      961 tgaccctagc aggcttttca gctggtggtc gtgatgtaat ggcaacatta atttctccac
     1021 tatttaaaga taaatatgat aaagcaatat catttagtgg aggaatgact ctagcagatg
     1081 aaacggatag tcaagatatt tttgcaacgg cgatagcacc attagttgtt gaagatggaa
     1141 tcaagtccac agaacttgaa gcaaaagaat ggttgttatc taacgatcgt caagtagctg
     1201 attatcttta tggacttcct gcggagcgtc tggcttcgtt gatgggaaat gctggtattc
     1261 gtatgtctgt ctttccgcac ctgtataaag atggggtagt cattccgaag gaaggatttg
     1321 atacttcaaa ttataatgat gtgcctcttc ttttaataac aggaactagt gaattttctt
     1381 tatttacagc tttcgatccc tattttgcaa attctgtgac agatggcagt ctattttcag
     1441 atgctgacaa attaaaagaa tttatattta ctgaatcata tggtagtgct ctgtatcgtc
     1501 tgtctaacac tgtagatagt gctagaaaat tgcaaggaac atataaatca ccaatataca
     1561 ttggagaaat ttcttatgga gataatacag agactgctcc aaaaacagct cagttgttgg
     1621 gtgcgtttca tggcgtattt gaacctttac ttcaacaacc atcaaactat gctcctttca
     1681 ttggtgaaga tttcaattct gaaggtgcta aacaactaag ccaacagttt aaagcatatt
     1741 tgaaaggatt tatcacaagt agtaaccctg aaggagaaga cttaccacaa tgggaagagt
     1801 ggacagctga cggcagtcag gtaatgaaat ttgatgctag tctagaaaaa gctgaaattg
     1861 aaatgagtga agattcacaa actgctgagg atattgtcgc gaaccttcga tcagatagtg
     1921 ctttatctgc agataaaaaa caagttttaa ttgacaatgt cttgaacggt cgttggttta
     1981 gtcaaccatt ggatggtttg aaagttaatg aatagtatat ttttgatgta ttaaaaaaat
     2041 ataaaagtaa aaaggaacac aaggcgttga caacggtgaa ataaaaaata aagtggttgg
     2101 cagtgccaat cacttttttg aatcttgttt agcgttgaag aaaatcctta tctcgctcag
     2161 gaatgcccgc ctcatcactt ttatagcgtt cagcggtgac agttagctgg tacttactac
     2221 gtaagtctag gatctcctgc atcattggag aagcatggtg gatgtccaaa gctgcttggt
     2281 ctgtccagct atcaaccaag aggattgaat gaggatcatc gagcggtgca aagtattgat
     2341 aacgtgtatt tccagcctgc tggcgaatgc ggtcggcaat gccactagct tccatttcct
     2401 gagcgaaagc acgcgcattg tcagctggtc cagtgtagta aaggtgcatg gtaatcatag
     2461 tataagatat agagggcgtt aagcggacac agacaaaata tagtctttta gtttactttt
     2521 agtactaggc aatgagctgc aggcagtact gaagtacgac aaagcgaatt aacgaagtaa
     2581 taaaagaaaa actaaatgac gtaggaaaca gaacaacgac gcaagcgtcc agttctcgtt
     2641 tatctttttg gcacagtccg tagcccgtat tcagttcaac caaatacgga ggccctagtc
     2701 ctttctatta tttattaaaa ttagtatagg ccctattctt ccgcaattgt ttgcggtagc
     2761 tactaggtgt agtatggtag tattgcttga actggcggtt gaagttggac aggttattaa
     2821 agccaacttc ggtcgcaatt tcaagcacag gcttgagagt gtttgtcagg agctcagtag
     2881 ctgcccgcag tcggacttgg atgataaatt ccatacagga agttcctgtt tgttgcttga
     2941 agattgtcat aaaatgggtt tttgtatagc ccatttgctc tgctagctgc tcgatggtga
     3001 gattttctgc atagtgttgt tggatgtatt ctatcaataa ccgcagtttt tcatttttcc
     3061 gatacatatc atcggtattt ttccggacaa tgtagcggta gcggtagagc aggtagaaga
     3121 agtcaaagag tcggctcttg agaggcagtt caaagtacgg tggctggtgt ctgaccaact
     3181 caaaaatggt gagcaggcat tgtctaatct ctgcgtagcc agggtcttgg ggctggatgc
     3241 gtggaataca cttgaaaaca tctgtctgta agggttgcag gtagagcata ctggtctgat
     3301 ctaggtgaga tgcccccagc atatccaagt gaaagagaag agtatccgtt tcatgtcccc
     3361 gttgttcaat cggatggatg gaatgcagtg cattgggccg catgagaata atatcaccag
     3421 cctgactatt gaaataatca tagtcgatat ggtaacgggc tgtccctccg taaacatagt
     3481 tgatttcaaa ttcattgtgc caatgaaaga gaatgtcagg aataccatcc atgacacagg
     3541 tatggtaata cttgtagggc aacaaacgac tatcgtaatc aatggcgtgc ttaaactgtt
     3601 tatccgttaa tggcggttgc ataccttcct ccttttcgta ggatagtatc attatagcat
     3661 attatttgag aagaaaaggg tttcaaatct gtttatacta tatttgttag aaaaaagata
     3721 agggagaaga aacatgtcac gttttccaaa aaatttcctc tggggaggag ctattgcagc
     3781 taaccaggca gaaggtgcct ataatgtgga cggacgcggt ttagtccaga cagacgttac
     3841 aacaggagga tctgtcaaca gcccccgcta tacaacctac attgataagg acggcaagcc
     3901 aggtaaatat gcttctatgg ggcatgctgg cggtcatctg ccagaagggg cgacctatgc
     3961 cgtcctagaa gaccactatt atccaaacca caaggctgtg gacttctacc accgctataa
     4021 agaagatatc aagctcttcg cagaaatggg ttactccgtt ttccgcttgt cgatttcatg
     4081 ggcacggatt ttcccaaatg gtgatgatgc agagccaaac caagcaggtc ttgatttcta
     4141 tcgctctgtc tttgaagaat gtcgcaaata tggcattgag ccattggttt ccatttggca
     4201 cttcgataca cctttgagct tggagcaacg ctatggtggt tggaaaaatc gtaagctcgt
     4261 tgatttttat gtcaagtatg cagaaaccat tttcaaggaa tacaagggtc tcgttaaata
     4321 ctggttgacc ttcaatgaaa tcaacggcgg tatcatgttc ttggatctct ttggtgatga
     4381 gatgactgac caggattatc aagatgccta ccaaagcctt caccatcaat ttgttgcctc
     4441 agccaaggct gttcaaatcg ggcatgagat tgacccagaa tacaagattg ggaacatgat
     4501 ttgcggtatt accttctacc ctggcacctg tgacccagca gatatccttg ccaaccaaca
     4561 cgcttgggag caaaatatct actattgtgg tgatgtacag gcaaaaggaa aatatggtac
     4621 ctacgctaaa cgcctatggg cagagcataa tgtggtggtt gagatggctg aggatgactt
     4681 ggaagttctg gccaaaggga aagtcgatat gtacaccttc tcatactata tgtctaccgt
     4741 tgttactacc cacaaatctg aagatacagt tgcaggtaac ttctctgcag gtgccaaaaa
     4801 cccttatctg acttactcag actggggttg ggcacacgat ccatctggac tccaatacta
     4861 ccttgaaaaa atgtatgacc gctatgaaat tccactcatg gtcgtggaaa atggcttggg
     4921 agcctttgat acggttgaag aagatggctc tattcacgat gattaccgta ttgactacca
     4981 tcgtgcccat gtcaatgcta tggcagatgc cattgccaat ggagttgatt tgattggcta
     5041 taccacttgg ggctgtattg acctagtatc agcaggaaca ggtgaaatgc gaaaacgcta
     5101 cggctttatc tacgttgata tggatgatgc tggaaatggg acacttgcta gaacaccaaa
     5161 agattcattc tactggtaca agaaagtcat tgccagcaat ggtgaggatg tagaataagg
     5221 aagacggcga agtgctgttt cagagcgtag acaaactcct aaaaaatata aaaaatttgc
     5281 gaaagatagc aattcactaa actcttagaa atgttgatat ttcagtgttt ctgagagttt
     5341 tttattttca ccataaagaa aaaagattga aaaaattgtc caaaatgaac tttttcttca
     5401 atctgagacg gcgaagtgcc gtttttcttt ggagagagca gaggataaat tgatagagta
     5461 ctagttgtag cagtctacca gttgaattaa cagtgtacag gcgactaata atgccaccag
     5521 actaattttt tcaatggagg caggcgcgat ttgttcatca gctatttcct tactgttacg
     5581 gaaaaaactg cagtggttat ttttgtaacc gtttgctaaa ctaataacta taaaatatac
     5641 aggaggcaat tatgtctaaa ttacctaaga attttttatg gggtggcgct gtagctgctc
     5701 accaacttga aggtggctgg caagaaggtg gaaaagggat ttctgtagca gatgtgatga
     5761 ctgcaggaag acacggggta cctagagaaa ttacagctgg tgtattagaa ggaaaatatt
     5821 atcctaatca tgaggccatt gatttttatc atcgctacaa agaagatatt gcactctttg
     5881 cagagatggg cttcaagtgt ttccgtactt caattgcatg gacacgtatt tttccaaagg
     5941 gcgacgaact ggaaccaaat gaagctggct tgcagtttta tgatgactta tttgatgagt
     6001 gtttaaaata tgggattgaa cctgttgtta ccctatcaca ctttgaattg ccttaccatc
     6061 tggtaactga gtatggtggt tttagaaacc gtcagacaat taatttcttt gtccgttttg
     6121 ctgagacctg cttccgtcgt tacaaggata aggtcaaata ctggatgacc tttaacgaga
     6181 ttaataacca agcaaattat caggaagatt ttgcaccttt taccaactca ggtattgttt
     6241 atcaagaggg tgaaaatcgt gaagcagtta tgtatcaagc ggcccattat gaattagttg
     6301 cctctgcacg cgctgttaaa attggacatg aaattaatcc tgactttcaa attggttgta
     6361 tgattgccat gtgtccgata tatcctgcga cttgcaaacc atctgatatt ttgatggcac
     6421 aaaaggcgat gcaaaaacgg tattactttg cagatgttca tgtgcatggt ttctaccccg
     6481 agcatatctt gcgctactgg gagagaaaag gtattagcgt tgatttcaca gagaaagatc
     6541 gcgaagattt gctagaagga acagttgatt acatcggttt ctcatactat atgagttttg
     6601 ctattgattc tcaccgcgag aataatcctc attacgatta tcttgagaca gaggacttgg
     6661 taaaaaatac ctatgtcaag gcttctgatt gggaatggca aattgaccca gaaggattgc
     6721 gctatgcatt aaactggttt acagatatgt atcatctgcc actttttatc gtagagaatg
     6781 gctttggtgc gattgaccaa gtcgaagaag atggaatggt gcatgatgac taccgtattg
     6841 attatcttgg tgctcatatc aaagagttta tcaaggcagt tgatgaggat ggagttgact
     6901 tgatgggata tacgccgtgg ggctgtattg acctggtgtc agcagggaca ggtgaaatgc
     6961 gcaaacgcta tggctttatc tatgttgata aagatgatga aggcaatgga agctatgccc
     7021 gttctcctaa acgctcattc gcatggtata aaaatgtcat cgcaacaaat ggtgaggaag
     7081 tttaatgaga agacctctgt agcgtaatgg ctacaggggt cttcatttat gttttttagt
     7141 attggtatgt taaaggagaa aattatatgg ttggtattat cgcagcttgc ttaactacct
     7201 ttggttttgt acctcaggtt atcaaggtag ttaagacaaa ggatacagag tcgatttcgt
     7261 taggaatgta tatgatgtct gtgacaggga tgtccttatg gttgttccat ggtattattc
     7321 aaggagatac ggccctcatt attgctaata gcctatctgt aacattagca gg
//
LOCUS       DASGAC010000107         7369 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.107, whole genome shotgun sequence.
ACCESSION   DASGAC010000107 DASGAC010000000
VERSION     DASGAC010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7369
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.107"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            33..2057
                     /locus_tag="U1335_001571"
     CDS             33..2057
                     /locus_tag="U1335_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HEM5232036.1"
                     /translation="MKKNIRLKSSVLALVAGFSVITTQAVLADELAVQIMGVNDFHGA
                     LDTTGTARLEGETVRNAGTAALLDAYMDDSQAEFEETAAETETPAESIRVQAGDMVGA
                     SPSNSGLLQDEPTVKVFNKMDVEYGTLGNHEFDEGLDEYNRIMTGEAPKEGQFNEIVD
                     NYTHEAAKQEIVIANVIDKETGEIPYGWKPYAIKTIPVNDKEANIGFIGVVTTEIPNL
                     VLKKNYEQYTFLNEAETIAKYARELAEKGVNAIVVLAHVPATSKDGVAAGEAADMIAK
                     LNEIYPEHSVDLVFAGHNHVYTNGTTGKTLIVQATSQGKAYADVRAVYDTDIADFKEV
                     PTAKIIAVAPGQKTPSPEIQAIVDEANNIVKKVTEQKIGTASQATDISREVNEFKESA
                     VGNLVTSAQLAIAKKSGYDVDFAMTNNGGIRADLKVQEDGTVTWGAAQAVQPFGNILQ
                     VVQMTGEQIYTALNQQYDEGEKYFLQMSGIKYIYTKADNPTEENPYKVVKAFKEDGTE
                     IVPTETYTLVINDFLFGGGDGFSIFKEAKLIGAINPDTEVFVEYLTDLEKAGQTISAT
                     ITGRKAFVEEYVEEPKAEEKGDTAGTTTDTKTPEKASDGVDSVANQKANEQPASSGSV
                     APISNKKAEKASGNQTLPNTGQEALGSLLISLGGLVSLGIAVSMRRKEGE"
     gene            2253..2324
                     /locus_tag="U1335_001572"
     tRNA            2253..2324
                     /locus_tag="U1335_001572"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2286..2288,aa:Arg,seq:cct)
     gene            complement(2345..3559)
                     /locus_tag="U1335_001573"
     CDS             complement(2345..3559)
                     /locus_tag="U1335_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HEM5232037.1"
                     /translation="MSNKMKQAIQLLFFSSLIGVGAGIITTLFGKILLGVGDLRSEYF
                     TYLIPFLPLAGVVIVFIYQKWGREVQAGMGLVFKAGQGELVQISPVLIPLIISTTWLS
                     HLVGASVGREGVAVQLGASLSHWLQKHGFTHLPKDMITKIGMAAGFAGLFQTPLAASF
                     FAIEVLIVGQYSWTSLPYCLVAAFTASTTSHLLGLEKFSHTIATTSFYFTDSFKWLFI
                     ALCFGFIGNLFAWFLAQAKSISTRWLPNPYIKIAIMGVGLTVLLFFFHQGRYTGLGTN
                     LIDASLAGEQVFAFDWLLKLLLTCLCLAAGFQGGEVTPLFAIGASSGAVLAGLLGLPV
                     ELVAALGYCAVFGSATNTLLAPILIGYEVFGWNIIPYAIPVLALAYLVNRKQTIYGQQ
                     LRKFNNAKKPII"
     gene            complement(3549..3827)
                     /locus_tag="U1335_001574"
     CDS             complement(3549..3827)
                     /locus_tag="U1335_001574"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HEM5232038.1"
                     /translation="MNLDCIREQINTIDSQLVELLEKRMELVDQVTAYKRATGKPVLD
                     TSRENAVLERVGKLVQKDDYRSAIQATFSDIMAQSRTYQSSKLANHEQ"
     gene            complement(3909..4178)
                     /gene="rpsN"
                     /locus_tag="U1335_001575"
     CDS             complement(3909..4178)
                     /gene="rpsN"
                     /locus_tag="U1335_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012560987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HEM5232039.1"
                     /translation="MAKKSKMARYQRQLELIERYADLRKSLKEKGDYQALRKLPRDSN
                     PNRLKYRDRTDGRPHAYMRKFGVSRITFRELAHLGQLPGVKKASW"
     gene            complement(4318..4779)
                     /locus_tag="U1335_001576"
     CDS             complement(4318..4779)
                     /locus_tag="U1335_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HEM5232040.1"
                     /translation="MALAKIVYASMTGNTEEIADIVASKLEELGLEVQVHECTTIETE
                     EILDADLIVVASYTYSYGGDGELPDEIVDFYADLADLDLTGKVYGVCGSGDTFYDDFC
                     SAVDDFDVMLGSRGATKGAENVKVDLAAEDEDIVNLEEFATDLVAKLDTMN"
     gene            4874..5818
                     /locus_tag="U1335_001577"
     CDS             4874..5818
                     /locus_tag="U1335_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional oligoribonuclease/PAP phosphatase
                     NrnA"
                     /protein_id="HEM5232041.1"
                     /translation="MTIYSKIIEKIHEYDTIIIHRHKRPDPDAIGSQVGLQKLLQKNF
                     PEKTIKVTGFEEPNLAWMAEMNQVSDQDYQGALVIVTDTANTARVDDDRYTQGDFLIK
                     IDHHPNEEPYGDLLWVNTEASSCSEMIAELALQSQLELDGETARLLYAGIVGDTGRFL
                     YPATSSRTFEIVARLRQEDFDFARMSRQMDTIDFKIAKLTGYVYDNLEVDEHGAARVI
                     LTQDILEKYGVTDADTSFIVGAPGRIGTVQSWGIFVEQTDGNYRVRLRSKYLPINEIA
                     KRHDGGGHPLASGANSYSLSENEQIYQEIQEVVRNASK"
     gene            5805..6833
                     /locus_tag="U1335_001578"
     CDS             5805..6833
                     /locus_tag="U1335_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEM5232042.1"
                     /translation="MQASSRSLRLMGTIIETKIWHPDAEQILDQVEELLYLYKDRFSA
                     NDLTSELMEVNLNAGVQAVPVADDLYELIKLGKEHSLAEASFLNITIGPLVQSWRIGF
                     SDAKLPTQEMISEKLQLINPRDIELDDEEQTVYLKKEGMAIDLGALAKGYVADKIVDF
                     LKRIGVEAGLINLGGNILTFGQAPHNPDGCWRIGIQDPQKTRGENALVLKIGEESVVT
                     SGIYERTLTVNGKTYHHILSPETGYPIESQLASLTIVSKQSVDGEIWTTRLFGQEITQ
                     IYKMVEETDGIEAVLIGLDGRILVTSGLSEKVLAGKERISDSLGSPSRGGFGARLTSD
                     LASGASVL"
     gene            6913..7194
                     /locus_tag="U1335_001579"
     CDS             6913..7194
                     /locus_tag="U1335_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008808933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HEM5232043.1"
                     /translation="MARKESMAERNFKMKKDIHPEYRTVVFMDTTTGYKFLSGSTKKS
                     NETVEFEGETYPLIRVEISSDSHPFYTGRQKFTQADGRVDKFNKKYGLK"
BASE COUNT         2332 a         1435 c         1627 g         1975 t
ORIGIN      
        1 atgaaaaaaa tagaaggagc attgttttgc ttatgaaaaa gaatattcgg ttgaaaagca
       61 gtgtactagc tcttgtagct ggttttagtg tcattacaac acaggctgtt ttagcagatg
      121 aattagctgt ccaaattatg ggagttaatg atttccatgg tgcgcttgat acgacaggga
      181 cagcgcgatt ggagggggaa acagttcgga atgcaggaac tgcagccttg cttgatgctt
      241 acatggatga ttcgcaagca gaatttgaag aaacagcagc agaaacagaa acacctgcag
      301 agtctatccg tgttcaagcc ggagatatgg ttggtgcaag tccatcgaat tctggacttt
      361 tacaagatga accaactgta aaagtcttta acaaaatgga tgttgaatat ggtactttgg
      421 ggaaccatga gtttgatgag ggacttgatg agtataaccg tatcatgact ggtgaggctc
      481 caaaagaagg ccagtttaat gagattgtag ataattatac tcatgaagca gccaaacagg
      541 agattgttat cgctaacgtt attgacaaag agacgggtga aattccgtat ggctggaaac
      601 cgtatgctat taagactatt cctgtaaatg ataaagaagc aaatattggc tttattggtg
      661 tagttacgac agaaattcct aatcttgttt tgaagaaaaa ctatgagcag tacacttttt
      721 tgaatgaggc agagacgatt gcgaaatatg cgcgtgagtt agctgaaaag ggtgtaaatg
      781 cgatagttgt actggctcac gtcccagcta caagcaagga tggtgtggct gctggtgaag
      841 ctgcagatat gattgctaag ctaaatgaaa tctatcctga acactcagtt gaccttgtgt
      901 ttgctggtca caaccatgtc tatacaaacg gtacaacagg caaaaccttg attgtacaag
      961 ctacctcaca aggtaaggct tatgcagatg ttagagctgt ttatgataca gatattgccg
     1021 actttaaaga agttccgact gcgaaaatta ttgcagtggc accagggcag aaaacaccaa
     1081 gtccagaaat tcaggcgatt gtagacgaag caaataacat tgttaaaaaa gtaacagagc
     1141 aaaaaattgg tacggctagt caagcgacag atatttctcg cgaggtaaat gaatttaaag
     1201 aaagtgctgt gggtaattta gtaacatcgg ctcaattagc tattgctaag aaatcaggtt
     1261 atgatgttga ctttgcaatg accaacaatg gcgggattcg ggcagatttg aaggtccaag
     1321 aggatggaac agttacttgg ggagcagcac aagctgttca accatttggg aatatcctac
     1381 aagtcgttca aatgacaggt gagcagattt atacagcctt aaatcaacaa tacgatgaag
     1441 gcgaaaaata tttccttcaa atgtctggaa ttaaatatat ctacacgaaa gcagataatc
     1501 caacggaaga aaatccttac aaggttgtta aagccttcaa agaagatgga acagagattg
     1561 ttccgacaga aacctataca cttgttatca acgacttctt atttggtggt ggggatggct
     1621 tctcgatttt caaagaagct aaactgattg gcgctatcaa tccagacaca gaagtatttg
     1681 ttgaatattt gactgattta gaaaaagcag gtcaaaccat tagtgcaact attacaggta
     1741 gaaaagcatt tgtagaggag tacgtagaag aaccaaaagc agaagaaaaa ggagatactg
     1801 ctgggacaac taccgatacg aaaacacctg aaaaagcaag cgacggtgtc gatagtgtag
     1861 caaatcagaa agcaaacgag caaccggcat catctggaag tgtggctcct atttcaaata
     1921 agaaagctga aaaagcatca gggaaccaaa cacttccaaa taccggacaa gaagccctag
     1981 gatcccttct tattagcttg ggtggcttag tttcactcgg aatagctgtc tcaatgagac
     2041 gtaaggaagg ggaataggaa tcaagcataa aaacgacaaa ctttcgaggt acattctaga
     2101 attacttctt ttagagatta tcatgagaga aatacataaa aacaattgtt tttcatctta
     2161 gagtaggttc tgctttttgt aaaaatttga aaaaacttat ataaccttgc tcttgcaatc
     2221 tgctctcttc tggtgtacaa tagagaagca gacttccctt agttaaatgg atataacaaa
     2281 ttcctcctaa gaattagttg caggttcgat tcctgcaggg gagatggaga gtatacgaaa
     2341 aagcctaaat gataggcttt tttgcgttat tgaatttcct caactgctgt ccataaatcg
     2401 tttgttttct atttacaaga taagctaggg cgagcactgg aatggcgtag gggatgatgt
     2461 tccaaccaaa tacctcgtag ccgattaaaa tcggtgccaa taatgtgttg gttgcagagc
     2521 caaagacagc acaatagcca agggcagcaa caagttctac tggcagcccc agtaatcctg
     2581 ctaaaacagc cccagaactt gctccaatcg caaagagcgg agtaacttcg cctccttgaa
     2641 aacctgcagc caaacaaaga caggttagta ggagttttag tagccaatcg aaagcaaaca
     2701 cctgttcccc agctaaactg gcatcaatca aattggttcc tagaccagta taacgacctt
     2761 gatggaagaa aaatagtaga acggtcagtc caactcccat gatagctatt ttaatgtaag
     2821 gatttggaag ccatcgagtc gagatgcttt ttgcttgcgc cagaaaccaa gcaaataaat
     2881 tgccgatgaa accgaagcaa agggcaataa atagccattt aaaactatct gtaaaataga
     2941 atgaggtagt agcgatggta tgcgaaaatt tctctaaacc caataaatgg gaagtagtag
     3001 aagccgtgaa agcggcaact agacaatagg ggagactagt ccaagaatat tggccaacga
     3061 ttaatacctc aatggcaaag aaactagcag ccaatggtgt ttgaaataac cctgcaaaac
     3121 ctgcggccat accaatcttt gttatcatat ctttgggcaa gtgtgtgaaa ccatgttttt
     3181 gtaaccagtg tgagagactg gctccaagtt ggacagctac accttcgcga ccaacggaag
     3241 caccgacaag atgactgagc caagttgtag agatgatgag cggaatgaga actggagaaa
     3301 tttgcactag ctccccttgt ccagctttga agactaagcc catacctgct tggacttccc
     3361 ttccccattt ttgataaatg aaaacaatca ccacccctgc aagtggcaga aaggggatta
     3421 gatatgtaaa atattcagat cgtaagtctc caacccctag tagaattttc ccaaaaagtg
     3481 tggtgataat tcctgcaccg actccaatta agctggaaaa gaaaaggagt tggatggctt
     3541 gtttcatctt attgctcatg attcgctaac ttggaagatt gataggttct tgattgggcc
     3601 ataatatcgc tgaaggttgc ttgaatggca gagcggtaat catccttttg aactaatttt
     3661 ccaactcttt caaggacagc attttctcgg ctggtatcca aaacaggctt acctgttgct
     3721 cgtttatagg ctgtaacttg gtcgaccaac tccattcgtt tttcaagtag ttcaaccaat
     3781 tggctatcaa tcgtgttaat ctgttcgcgg atgcaatcca aattcatctt ataaacctcc
     3841 gtatattgtt tcagttggtt tttagtatag caaaaaacaa ggcggaaaac cagccttgtt
     3901 aagaatgttt accaacttgc ttttttaacc ccagggagtt gaccaagatg ggctaattca
     3961 cggaaggtaa tccgactcac accgaatttt cgcatataag catgcggacg gccatcagtc
     4021 cggtcgcggt atttcagtcg atttggattt gagtcgcgag gcaattttcg aagtgcttga
     4081 tagtcacctt tttctttgag acttttacgt aaatccgcat agcgctcgat taactccaac
     4141 tgtctctgat agcgtgccat ttttgatttt ttagccataa aattctcctt ttcaaaaaaa
     4201 cttaaccagt taattatata tcaaaactat taagattgca agcaataggt gtacaatctt
     4261 aataaaaggc taaaagaaaa cagactagac ctattgataa gccagtctgt ttgtcagtta
     4321 attcattgta tctagtttag caacaaggtc tgtcgcgaat tcctcaaggt taacaatatc
     4381 ctcatcttca gcggcaaggt ctaccttaac attttcggca cccttagttg caccacgtga
     4441 acccaacatg acatcaaagt catctactgc actacagaag tcatcataga aggtatcgcc
     4501 agaaccacaa acaccgtaga ccttaccagt caaatctaag tcagctaggt cagcatagaa
     4561 atcaacgatt tcatcaggaa gctcaccgtc tccaccgtaa gaataggtgt agctggcaac
     4621 gacaatcaag tccgcatcca agatttcttc tgtttcaatg gttgtacatt cgtgaacctg
     4681 tacttccaaa cctaactctt ctagcttact ggcgacgatg tcagcaattt cttctgtgtt
     4741 accagtcata ctagcgtaaa ctatttttgc tagtgccata atttcctcca aattacatag
     4801 taattccatt ataccacact cccctcattt tcaaaagggg aagtttatgc taaaatgatg
     4861 aaaaggagtt gctatgacaa tttacagtaa aattattgaa aaaattcacg aatacgacac
     4921 gattattatt caccgacata aacgaccaga tccggatgcc attggtagtc aggttggctt
     4981 gcagaaactc ttgcagaaga attttcctga aaaaaccatc aaggtaaccg gttttgagga
     5041 accaaatctt gcctggatgg cagaaatgaa tcaggtttcc gaccaagatt atcaaggggc
     5101 cttggttatc gtaacggata ctgccaatac agcccgtgtg gatgatgacc gctacactca
     5161 gggtgatttc ctgattaaaa tcgaccacca tccaaatgaa gagccatacg gcgacctgct
     5221 ctgggtcaat acggaagcta gttcttgcag tgaaatgatt gcagaattgg cccttcaaag
     5281 tcagttggaa ttggacgggg aaactgctcg tctactctat gcaggaattg tgggcgatac
     5341 aggccgcttt ctctatccag caaccagctc gcgaaccttt gagattgttg ctcgtctccg
     5401 ccaagaagat tttgactttg caaggatgtc tcgccagatg gataccattg atttcaagat
     5461 tgccaagttg acaggttacg tctacgacaa cttggaagtg gatgaacatg gtgcggcacg
     5521 tgttattttg acacaggata ttctcgaaaa atacggggtg accgatgcgg acacttcctt
     5581 tatcgttggg gctccaggac ggattggtac tgttcaatct tgggggattt ttgtggaaca
     5641 aactgacgga aattacagag tccgtttgcg cagtaagtat cttccaatca acgagattgc
     5701 caaacgccac gatggcggtg gccacccact agcaagtggt gctaactctt attcactctc
     5761 cgaaaatgag caaatatacc aagaaatcca agaggtcgtg aggaatgcaa gcaagtagcc
     5821 gttcccttcg tttaatggga accatcatag aaactaaaat atggcatcca gatgcagaac
     5881 agattttgga tcaggtagaa gagcttcttt atctctacaa ggatcggttt tctgccaatg
     5941 acttgacctc tgaattaatg gaggtcaacc tcaatgcggg tgttcaggcg gttcctgttg
     6001 ccgatgacct gtatgaattg attaaattgg gcaaagaaca cagtctggct gaagctagtt
     6061 ttctgaacat tactattggt ccccttgtgc aaagctggcg gattggattt agcgatgcca
     6121 aacttccaac ccaagaaatg atcagtgaaa aactccagct catcaatcca agggacatcg
     6181 aattagatga tgaggagcag acagtctatt tgaaaaaaga aggtatggcg attgatctgg
     6241 gtgctcttgc taaaggatat gtagcagata agattgttga cttcttgaaa agaataggtg
     6301 tggaggctgg actgattaac ctgggaggca atatcttaac tttcggtcag gctccgcata
     6361 atccagatgg ttgctggcga attgggattc aggatccaca gaaaacacgg ggtgagaatg
     6421 ccctcgtcct caaaatagga gaagaatcag tagttacctc tggtatttac gaaagaaccc
     6481 ttaccgtgaa tggaaagacc tatcatcata ttttgagtcc cgagaccggc tatccaatcg
     6541 agtcgcagct ggctagtttg accattgtgt ccaaacaatc tgttgacggt gagatttgga
     6601 cgactcgact gtttggtcaa gaaataactc agatttataa gatggtagaa gaaacggatg
     6661 gtatcgaagc agttctgatt gggctggatg gcaggattct agtgacctca gggctttctg
     6721 agaaagttct tgctggtaaa gaaagaattt ctgatagctt gggcagtcct tcaagagggg
     6781 gatttggggc aagattaact tctgaccttg cttcaggtgc ttccgtacta taacttgaaa
     6841 aaatattaaa aaaataggta aaaagacttg ccataagaac aaacttttgg taaacttaaa
     6901 tggttataat ctatggctcg gaaagagtcc atggcagaaa ggaattttaa aatgaaaaaa
     6961 gatatccatc cagaatatcg cactgttgtc ttcatggaca caactactgg ctacaagttc
     7021 cttagcggtt caactaaaaa atctaacgaa acagttgaat tcgaaggtga aacttaccca
     7081 ttgatccgtg tggaaatttc atcagactca cacccattct acactggacg tcaaaagttc
     7141 actcaagcag atggacgtgt ggacaagttc aacaaaaaat acggtctcaa gtaagaaacc
     7201 atatttacat tacagaaatg ttgatacaaa gccttttcca agaaattgga gagggctttt
     7261 ttcgtgcgtg attgccaaaa tgattgccat tggtttacat actcatgaat tgagcaaact
     7321 tttgtgctgt ttgctctttt gcttgttctg tcacatgagc gtaaatatt
//
LOCUS       DASGAC010000108         7155 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.108, whole genome shotgun sequence.
ACCESSION   DASGAC010000108 DASGAC010000000
VERSION     DASGAC010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7155
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.108"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            125..751
                     /locus_tag="U1335_001580"
                     /pseudo
     CDS             125..751
                     /locus_tag="U1335_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775244.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
     gene            1304..2977
                     /gene="ltrA"
                     /locus_tag="U1335_001581"
     CDS             1304..2977
                     /gene="ltrA"
                     /locus_tag="U1335_001581"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017284794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HEM5232044.1"
                     /translation="MNDKHSTTAPAEKLSHKQLLAKQWKSIDWKRAEQEVNRLQIRIV
                     KATQAKHTNTVKRLQYLLTHSFYAKALAVRRVTTNKGKKTAGVDGELWTTPTQKMEAL
                     LSLTDKGYKASPLRRVYIDKKDKTKKRPLGIPTMYDRAMQALYALALEPVAETTADTK
                     SFGFRKGRSCQDACEYIFTALSRKASPQWILEGDIKGCFDNISHDWLLENIPMDKSIL
                     KQFLKAGFVFKGELFPTEDGTPQGGIISPILANMALDGLQQVLSDRFHTNRLGKIDLR
                     FKNSHKVNLVRYADDFIVTAATQEIALEAKELIREFLLGRGLELSEEKTLVTHINDGF
                     DLLGWNFRKYKGKLIVKPSKNSIQTVIGKFSETILKRGKAWEQEVLIMKLNQQIRGWT
                     NYHQSVCASEAFSYLDYHLYELLWRWAKRRHPKKGQWWVSTKYWHRRGNRSWVFASGD
                     KELIRVDHTAIVRHTKVRENANPYLDIDYFAQRTFNHGMKRLTGRFKLVWKKQDGRCH
                     HCGLPMELGEDREIFFKVPKSKGGVEEVDNMAYVHSYCQRLFIESRSKE"
     gene            3063..3212
                     /locus_tag="U1335_001582"
                     /pseudo
     CDS             3063..3212
                     /locus_tag="U1335_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011837344.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
     gene            3372..4577
                     /gene="sstT"
                     /locus_tag="U1335_001583"
     CDS             3372..4577
                     /gene="sstT"
                     /locus_tag="U1335_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HEM5232045.1"
                     /translation="MNSIISVWKKMNLIRKIGIGVVLGVLLGLIAPKIAVIALFGSLF
                     VGALKAIAPLLVLTLVAHALSQAPAGQKSNMRTVICLYLFGTFAAAFIAVGASYLFPI
                     KLVLSTTTTTDITPPQGIAEVFQDLLLKIVDNPINALATANYIGVLTWAAVFGLAFRH
                     ASKPTKDLLQSAAEVTSKVVGWIIGLAPFGILGLVFDTIANNGLAALKNYGALLLVLV
                     GCMAFVALVVNPLIAFLVMKKNPYPLVFECLRVSGVTAFFTRSSAANIPVNMQLCKRL
                     GVDPDTYSVSIPLGATINMAGAAITINILTMAAVHTLGISVDFSSALLLSVVASLSAA
                     GASGVAGGSLLLIPVACSLFGIPNEIAMQVVGVGFVVGVIQDSCETALNSSTDVLFTV
                     VAERSAWKK"
     gene            4677..6077
                     /gene="pepV"
                     /locus_tag="U1335_001584"
     CDS             4677..6077
                     /gene="pepV"
                     /locus_tag="U1335_001584"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepV"
                     /protein_id="HEM5232046.1"
                     /translation="MTVNFRAEFDKRKDEFLADLFDLLRINSERDDSQADAQHPFGPG
                     PVRALDKFLEIAQRDGYPTKNVDNYAGHFEFGEGDEVLGIFGHLDVVPAGSGWNTDPY
                     EPQIIDGKLFARGSSDDKGPTMACYYGLKIIKELGLPTSKKVRFIVGTDEESGWADMD
                     YYFEHVGLPLPDFGFSPDAEFPIINGEKGNITAYLHFAGENSGAAKLHSFTGGLRENM
                     VPESATAIISGDLADLDSKLADFTAAYGLKADAETLENGQVQVTVIGKSAHGSTPEEG
                     VNGATYLAKFLSQFAFDGAAKSYLDLAGQVLLEDHDAKKLGVAIYDEQMGALSMNAGV
                     FKFDETSSDNTIALNFRYPKNTNPETIKAGLEKLGVEAVSLSEHGHTPHYCPIDDPMV
                     ATLLSVYEKHTGLKGHEQVIGGGTFGRLLKRGVAYGAMFPGDVNTMHQANEFIEVEQL
                     YRAAAIYAEAIYELIK"
     gene            6118..6576
                     /locus_tag="U1335_001585"
     CDS             6118..6576
                     /locus_tag="U1335_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5232047.1"
                     /translation="MKLKELCFSDMEMVKELFLSVFSQEPWNDDWSDEEQLDCYIGDL
                     LAYPRALCFGLFDQEKLIGLSIGYIRYWYEGTEYRIEEFCMSRDYQGQGHGASLLADM
                     EKQLADRKIVHILLQTERHLPAFFFYEKCGFRALEEDVTMVKKVGHHGTC"
     gene            6563..7141
                     /locus_tag="U1335_001586"
     CDS             6563..7141
                     /locus_tag="U1335_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003092921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEM5232048.1"
                     /translation="MELADIRQAIIEDVANRDFTNKGIAPLFQAPSTAKILIIGQAPG
                     LKTQEKGHLFDDASGDNLRKWLGVGRQTFYESGHFAILPMDFYYPGKGKSGDLPPRKD
                     FAPKWHQLILDQLPELELTILVGNYAQTYYLEKSQRNLTERVKHADDYLPTYFPLPHP
                     SPRNNIWQAKNPWFQAEIIPNLQKILMQILEK"
BASE COUNT         2123 a         1422 c         1635 g         1975 t
ORIGIN      
        1 cttgcttacg cttgattaac tagcacaacg ggtaatagaa tagaattagc atagtaaagg
       61 aggtaaaaac atgaaaagaa tagaacgagg ttacactagc taggcctctt tagtggaaat
      121 aagaatgaca gattatgtaa actacaacca agaacgttgg aatcgggttt cagctagaca
      181 gggaaatgcc tataccgttc cgctcagtca tgaggaattt cttgttgcca aagataagcc
      241 cttatccgtt tctttgacgg ttggaaagac agtaccgctt gactggtttg aaaaagccca
      301 aggtaagaaa ttgctgggtt tggcctgtgg tggtggtcaa cagggaccaa tttttgcggc
      361 tcatggctat gagacaacta ttttggactt ctccaaggaa cagttggaca aggataggct
      421 agttgctgag cgagaaaatc tggatttgca aacggtccag gcagatatga cacaagcctt
      481 tccttttgaa gacgagagtt ttgacatcat cttttgtccg gtttcaaatg tttatatcga
      541 agatttgacc aatatgtggc aggagtctta tcgggttttg aaaaagggag ggttgctcat
      601 ggttggctac atgaaccctt ggatttatct ctttgatgct gatgatgttt gggagcatcc
      661 agacagagca ttggttccaa tgtacagcct ccccttcaat gcacgacaat tagaagaagc
      721 aggacaaatc acgattgatc cagaatatgg cgtgcgacaa gaagtcgtgt tataaattgc
      781 tagtttagct actctatcca tttggggtaa tcctaccaca gcctgcttga ctggtaacgg
      841 ttatgttggg aagcctgtgg gacaatatgg aaagtctgat agcctaaaat cggatggact
      901 gttaggataa gaatactatg gtgaacagac gtgaaccatc gcaagagtcg ttacagggac
      961 taagtgaaat aaggctgata cacttacacc aaaaggtacg gaggaggtca ttggggcttt
     1021 cataacctga tgacaaatgg acacattctc tcggctcaaa gatggcacct aaggtattca
     1081 caattattta taacacggaa cttggtaagc cctatgtatt ccttttaatc gatagaaggt
     1141 attgaactcg taagagggat agacgataca gagggtagag gaaaggataa aaagcgaatg
     1201 ctccaactgt aatggtagga gataggggtt caaactttgc cctgacctga aagggtgcag
     1261 acttatccta tggtatttca tgacaaaaaa tggaggtaaa cctatgaatg ataaacattc
     1321 aacgacagca ccagctgaga agttatcaca caagcaactg cttgcgaaac aatggaaaag
     1381 cattgattgg aagagagcag aacaagaagt gaataggcta caaatcagga ttgtcaaggc
     1441 tactcaagcc aaacacacaa acacagtgaa aagacttcaa tatttactaa cccattcgtt
     1501 ctatgccaag gcacttgccg ttcgtcgagt aacgactaac aaaggtaaga aaacagctgg
     1561 tgtagatggt gaactgtgga cgacacctac tcaaaagatg gaggctctcc tatctctaac
     1621 tgacaaaggc tataaagcca gtccgttgag acgggtttac attgacaaaa aggacaagac
     1681 gaaaaaacgt ccactaggta ttccgactat gtacgacaga gctatgcagg cactctatgc
     1741 tttagcatta gaacctgttg cagagacaac cgcggatact aaatcattcg gcttccgaaa
     1801 aggaagaagc tgtcaagatg cttgtgaata tatcttcaca gcactatcac gaaaagcttc
     1861 tcctcagtgg attttagaag gcgacatcaa aggctgtttt gacaacatca gtcatgactg
     1921 gctcttagag aacattccga tggataaatc tatcttaaaa caattcctta aagcaggttt
     1981 tgtgttcaag ggtgagttat tcccaacgga agacggcacg ccacaaggcg gtatcatttc
     2041 gcctatcctt gccaatatgg cactcgatgg attacaacaa gtcttatcag atagatttca
     2101 taccaatcgt ttaggaaaaa ttgaccttcg attcaagaat agccataagg tcaatcttgt
     2161 ccgttatgcg gatgatttta tcgtcacagc tgcgacacaa gaaattgcat tagaggctaa
     2221 agaattgatt agagagtttc tgcttggacg aggtttagag ctgtcagagg aaaagacatt
     2281 ggtaactcat atcaacgatg gtttcgacct acttggttgg aattttcgga agtacaaggg
     2341 gaaattgatt gtaaaaccat ctaagaattc tattcaaact gttattggta aattctcaga
     2401 aaccatcctc aagcgaggaa aagcatggga gcaagaagtc ttaatcatga aactaaatca
     2461 acagataaga ggatggacaa actaccacca atccgtgtgt gctagtgaag ccttctccta
     2521 tctggactat catttatacg aattattgtg gcgatgggca aaacgtcgtc atccaaagaa
     2581 aggccagtgg tgggtttcga ccaagtattg gcatagaaga ggcaatcgaa gttgggtatt
     2641 cgcttcaggc gataaagaac tcattcgagt tgaccatact gctatcgtca gacatacaaa
     2701 agtcagagaa aatgccaatc cttacttgga tatagactat tttgctcaac gaacctttaa
     2761 tcatggtatg aaacggttga caggtcgttt taaacttgtt tggaagaaac aagacggacg
     2821 ctgtcatcac tgtggactcc cgatggaact tggagaagat agagaaattt tctttaaagt
     2881 tccaaaatca aagggaggtg tggaagaagt tgataatatg gcttatgtgc atagctactg
     2941 tcagcgacta tttattgaga gccgctcgaa agagtgatga aatgcttgag ccgtatgagg
     3001 ggaaactctc acgtacggtt cttagagagg aaggtggtag taataccact aacctactcg
     3061 actatgaatt tagccacacc ttagaagaac agattgctgg gcaattacga gctggttttg
     3121 ccatgattga tttttatgaa tccaaagaca gtcggaatcg cctgtcccaa tttggcccag
     3181 attatctggc taatttgtct gtaaaattgt agaaaaagct atcgaaaggt ggctttttgg
     3241 ttcagtttgt aaagacgaaa atgttattgc atgcatttca aattttcact acctgatact
     3301 cattttttat tctattgacc aagcctcgtt tttctgctaa tatggaaaaa tgtttgtttg
     3361 gaggtaaatg agtgaatagt ataatatctg tatggaaaaa aatgaattta atccgaaaaa
     3421 tcggaattgg tgttgttttg ggagtgttac taggcttaat tgctccaaaa atagcggtca
     3481 ttgctctctt tggtagtcta tttgtaggag cattgaaagc tatagcccct cttttggttc
     3541 tgaccttggt agcacatgct ctatcacaag ctcctgctgg tcaaaaatcg aatatgagga
     3601 cagttatctg cttgtatcta tttggtactt ttgctgcggc cttcattgct gtaggagcaa
     3661 gctatttatt ccctattaaa ctagttcttt ctactacaac gactacggac attactccac
     3721 cacaagggat tgctgaagta tttcaagatt tgttattgaa aatagtcgac aatccgatta
     3781 atgctcttgc aacggctaat tatattggtg ttttgacatg ggcggcagtg tttggcttgg
     3841 cctttcgtca tgcaagcaag ccaaccaaag atttattgca atctgcggcg gaagtgactt
     3901 ctaaagttgt aggctggatt attggactag cacctttcgg tatcttagga ttagtttttg
     3961 atacaattgc aaataatgga ttggcagctc ttaagaatta cggagctcta ttactagtat
     4021 tagttggttg catggctttt gtcgctctgg tggtcaatcc attgattgcc tttcttgtta
     4081 tgaagaaaaa tccttacccg ctggtatttg aatgtcttcg agttagcggt gtaactgcct
     4141 ttttcacaag aagttcagca gctaatattc ctgtcaatat gcagctctgc aaacgtttag
     4201 gagtggatcc agatacatac tcagtatcca ttccgctcgg tgccacaatt aatatggctg
     4261 gcgcggctat tacgattaat attttaacaa tggcagctgt tcatacactt ggcattagtg
     4321 ttgatttcag ctcagctctt cttttatccg ttgttgcatc actatcagca gcaggtgcat
     4381 caggtgtagc aggaggctcg cttctcctca ttccagtagc atgtagccta tttggtattc
     4441 caaatgaaat cgccatgcag gttgttggag tcggatttgt ggtcggagtg attcaggact
     4501 cttgtgaaac agccctcaac tcctcaaccg atgttttgtt tacagttgta gcagaacgat
     4561 ctgcttggaa aaaatagaaa gaagttgggt gaccaacttt tttcttcgct ttacttctga
     4621 aatctctttt attttgtgat aaaatagact tactttgata ctgaaaagga gaaaatatga
     4681 cagtaaattt tagagcagag tttgacaaac gcaaagatga gtttctagcg gacctctttg
     4741 acctcttacg catcaattct gagcgtgacg atagccaggc agatgcccag cacccatttg
     4801 gacctggacc agtgcgtgcc ttggacaagt tcctggaaat tgctcagcgt gatggctatc
     4861 caactaaaaa tgtcgataac tacgcaggtc actttgagtt tggcgagggt gacgaagtcc
     4921 tcggtatctt cggtcacttg gacgtggtgc cagcaggaag tggctggaac actgacccat
     4981 acgagccgca aatcattgat ggcaagctct ttgcccgcgg atcctctgac gacaagggac
     5041 cgaccatggc ttgctactac ggcttgaaaa tcatcaagga attgggcctt ccgacttcta
     5101 aaaaagtccg attcatcgtc ggtactgacg aagagtcagg ctgggcggac atggattact
     5161 acttcgagca cgtcggcctc cctttgccag acttcggatt ttctccagat gccgagttcc
     5221 cgattattaa tggcgaaaag ggcaatatca cagcttattt gcattttgcg ggggaaaata
     5281 gcggagctgc taaactgcat tccttcacag gcggtttgcg tgagaacatg gtgcctgaat
     5341 ctgcgacagc tattatctct ggcgaccttg cagatctgga cagcaagttg gcagatttca
     5401 cagcagccta tggcctaaaa gctgacgcgg aaacccttga aaacggacag gtacaagtga
     5461 ccgtcatcgg aaaatcagcc cacggttcaa ccccagaaga aggtgtcaac ggagcaacct
     5521 atttggcaaa attcctcagc caattcgcct ttgacggagc agcaaaatcc tatcttgact
     5581 tagcaggaca agtccttctg gaagaccatg acgctaaaaa actcggcgta gccatctacg
     5641 atgagcaaat gggagctctt tctatgaacg ctggtgtctt taagtttgat gaaacctcat
     5701 ctgataacac catcgccctc aacttccgtt atccaaaaaa taccaaccca gaaaccatca
     5761 aggctggttt ggaaaaactg ggcgtggaag ctgttagcct gtctgagcat ggtcatactc
     5821 cacattattg cccaattgat gacccaatgg tcgcaaccct cttgtctgtt tatgaaaaac
     5881 acacaggctt gaaaggtcac gaacaagtaa tcggtggcgg aacatttgga cgcctgctca
     5941 aacgtggcgt tgcctatgga gccatgttcc caggcgatgt caacaccatg caccaagcca
     6001 acgaatttat cgaagttgag caactctacc gcgcagctgc catttatgca gaagctattt
     6061 atgaactcat taagtaatac atgaagacgg gtttgcccgt cttttttagg aggaaatatg
     6121 aaactgaaag aactttgttt ttcagacatg gaaatggtta aagaattatt tttgtctgtt
     6181 ttcagccaag aaccttggaa tgatgattgg tcagatgagg aacaattaga ttgctacata
     6241 ggcgatttac tggcatatcc aagagcactc tgttttggct tgtttgacca ggaaaaattg
     6301 ataggtctgt caattggtta cattcgctat tggtatgagg ggaccgaata ccgaattgaa
     6361 gagttctgca tgtcccgtga ttaccaaggg caaggacatg gtgctagttt attagctgat
     6421 atggagaagc agttagctga tagaaaaatt gttcatattc ttctgcaaac cgagcgtcat
     6481 ttaccagcct ttttcttcta tgaaaaatgc ggtttccgag ctttagaaga agatgtgacc
     6541 atggtcaaga aagtaggaca tcatggaact tgctgatatt cgtcaagcca tcattgagga
     6601 tgttgctaac cgagacttta caaacaaggg aatagctccc cttttccaag ccccttcaac
     6661 cgccaaaatt ctcattattg gacaggcacc tggattgaag acccaggaaa aagggcattt
     6721 atttgacgac gccagtggag acaatcttcg taaatggttg ggcgtgggtc gacagacttt
     6781 ttatgaatcg ggtcattttg ccattcttcc aatggatttc tattatccag gaaaagggaa
     6841 gtctggggat ttgccacctc gcaaggattt tgcgcccaag tggcaccagc ttattctgga
     6901 ccaactgcca gagcttgagc taaccatatt ggtaggcaat tatgctcaaa cttattattt
     6961 ggaaaaatcc caaaggaacc tgacggagag agtgaaacat gcagatgatt accttcccac
     7021 ttattttcct ttgccccatc catcacctag aaacaatatc tggcaggcaa agaatccttg
     7081 gtttcaagcg gaaatcattc caaatttaca aaaaatactt atgcaaatac ttgaaaaata
     7141 aggtaaaaat gatac
//
LOCUS       DASGAC010000109         7140 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.109, whole genome shotgun sequence.
ACCESSION   DASGAC010000109 DASGAC010000000
VERSION     DASGAC010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7140)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7140)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7140
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.109"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(666..2204)
                     /locus_tag="U1335_001587"
     CDS             complement(666..2204)
                     /locus_tag="U1335_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014621447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClC family H(+)/Cl(-) exchange transporter"
                     /protein_id="HEM5232049.1"
                     /translation="MENHRKEVSFISQSILYSVLRGGLVGIVAGLVVVAFRLAIEKLF
                     SVFTHLYSLATDNAIYLLLIGGLYLVIALLVGKLIKDEPNTKGSGIPQVEAELKGIMD
                     LNWWSVLWRKFIGGVLSIASGLMLGREGPSIQLGAVTAKGISVLLKSSEMERRSLIAS
                     GAAAGLAAAFNAPIAGLLFVVEEVYHQFSRLVWVSALAASITANFISLHFFGLMPVLH
                     MPKDLQLLSLDQYWIYILLGVFLGLAGYVYEVVILNIQGFYTLLSKIIPLPVPYYSVF
                     AFLFIIPIGYFFPNLLGGGHHLILELPYLEQGLLTLAILILIRFVWSMISYGSGLPGG
                     IFLPILTLGSLLGLFVARFFLDIGFISQEQMLLFIVLGMAGFFAAISKAPLTAIILVT
                     EMVGSLNQLMVIGLVALSSYVMMDLLGGAPVYEAMLEKILPEEVEQQEHMTLIEVVVN
                     ETLDRRFVSELRLPDSCLITSQIHHGKSRIVKGNSQLSMGDSLLVAVPISQIHTVRRI
                     FDGD"
     gene            complement(2318..3388)
                     /locus_tag="U1335_001588"
     CDS             complement(2318..3388)
                     /locus_tag="U1335_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5232050.1"
                     /translation="MKRLYSFFVGIIAIVLVLWGISSKLEADSTQGTTDKLVIYNWGD
                     YIDPELLEEFTAETGIQVDYQTFDSNESMYTKIKQGGTTYDLAVPSEYMISKMTEEDM
                     LVKLDKSKIEGLENIDPQFMGLSFDKNNDYSIPYFWGTLGIVYNETMVENPPQEWEDL
                     WSEEYRDNIMLIDGVREVMGFGLQSLGYSLNSKNPAEIEKAAEHLYNLTPNVKAIVAD
                     EIKGYMIQDAAAIAVSFSGEASEMLDGNENLRYVVPSKGSNLWFDNMVIPKTAKNIDG
                     AYAFMSFMLRPENALRNAEYVGYSTPIPAAKAMLDEETQNDESFYPSEETMKKMEVYD
                     NLGPEILGMYNDLYLQFKMYRK"
     gene            complement(3388..4158)
                     /locus_tag="U1335_001589"
     CDS             complement(3388..4158)
                     /locus_tag="U1335_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5232051.1"
                     /translation="MKKFANIYLTVAFLLLYLPIFYLIFYAFNEGGDMNGFTGFTLEH
                     FSSMLGDSRLMLILAQTFFLAFLSSLIATLIGTFGAIYIYQAKPRFQNALLSVNNILM
                     VAPDVMIGASFLILFTMIGFQLGFVSVLLSHIAFSIPIVVLMVLPRLKEMNADMISAA
                     YDLGATQPQMLKEIMLPYLTPAIIAGYFMAFTYSLDDFAVTFFVTGNGYSNLSVEIYS
                     RARQGISLEINALSTLVFLFSILLVVGYYFISREKEAN"
     gene            complement(4158..4958)
                     /locus_tag="U1335_001590"
     CDS             complement(4158..4958)
                     /locus_tag="U1335_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5232052.1"
                     /translation="MKKTSRLFAIPYALWIFLFVLAPVALIIFKSFFDIHGNFTLANY
                     QTYFNSPNMTYLRMSFNSIFYAGIITLVTLLVSYPTAYFLTKLKHRQLWLMLIILPTW
                     VNLLLKAYAFIGIFGQHGSINQFLEFIGLGAQQILFTDFSFIAVAAYIEIPFMILPIF
                     NALDDLDKNLINASRDLGATPWQTFTKVIFPLSMNGVRSGVQAVFIPSLSLFMLTRLI
                     GGNRVITLGTAIEQHFLTTQNWGMGSTIGVVLILAMLLIMWMTKERKK"
     gene            complement(4942..6096)
                     /locus_tag="U1335_001591"
     CDS             complement(4942..6096)
                     /locus_tag="U1335_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5232053.1"
                     /translation="MKKPIIEFKNVSKVFEDSGTTVLKDISFELEEGKFYTLLGASGS
                     GKSTILNIIAGLLDASSGDIYLDGQRINDVPTNKRDVHTVFQSYALFPHMTVFENVAF
                     PLKLRKVDKAEIERRVTEALQMVRLSGYENRSIQKLSGGQRQRVAIARAIINQPRVVL
                     LDEPLSALDLKLRTEMQYELRELQQRLGITFVFVTHDQEEALAMSDWIFVMNEGEIVQ
                     SGTPVDIYDEPINHFVATFIGESNILPGRMIEDYLVEFNGKRFEAVDGGMRPNEEVEV
                     VIRPEDLQITLPEEGKLQVKVDTQLFRGVHYEIIAYDDLGNEWMIHSTRKAIVGEVIG
                     LSFEPEDIHIMRLNETEEEFDARIEEYVEVEEVEDGLINAIEEERNEENL"
     gene            complement(6242..7135)
                     /gene="murB"
                     /locus_tag="U1335_001592"
     CDS             complement(6242..7135)
                     /gene="murB"
                     /locus_tag="U1335_001592"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006531057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEM5232054.1"
                     /translation="MRLELEGIDIRFDEPLKEYTYTKVGGAVDYLAFPRNRYEIVRIV
                     EFAKREGIPWQVLGNSSNIIVRDGGIRGFVIRMDKLNSVTVSGYTIEAEAGANLIETT
                     KVALFHSLSGFEFACGIPGSIGGAVYMNAGAYGGEVAHILVSAQILTPAGYVETLDNR
                     ELRFGYRSSILQENGAIVLSAKFALKPGNHTVIQQEMARLTHLRELKQPLEYPSCGSV
                     FKRPLGHFAGQLIMEAGLKGYRIGGVEVSEKHAGFMVNVDNGTAKDYENLIAHVIDVV
                     EKSSGITLEREVRIIGDPSDT"
BASE COUNT         2302 a         1548 c         1346 g         1944 t
ORIGIN      
        1 aaagggagtg aacaagacat tcatggtagc tccatcctta cccacagaat aatgagaatg
       61 agcataaagc cctcactaag attatatacc tagtgagggc cttgcggttg gtacattatt
      121 gatgttaatt atgatgacaa aactgctcca gcctactgat aagaaccaca atatacactc
      181 aagaatatga ctaaaattca gtagataggc tctctaattt ataaggaagg aattgtcata
      241 gataatcatg tgtagatcaa gtcgatattg tcgtttgtat tcccctcaac ttgtccaaag
      301 cgttacttag ctacatttga tacaacgact aaaggtctac gtgcttacca cgattttctc
      361 agtcaaattc atgtggaagc tgttggtatg gaaagcacag gtgtctattg gtgtcctgtc
      421 tagcatgctc tatgtgagga cttcgagcta atacttgctc aaccagccca catgaaggcc
      481 attacaggtc agaaaactga caagaaagac gcttactgga ttgccaaatg aatgcggatt
      541 ggtctgcttc ctcggagttt cattcccgat gaaatcattc ctgaattgag agagttgacc
      601 agacaacaga aacattataa tattgggact tttctcatct ctttgttaag acaatctaaa
      661 aaatgctaat ctccatcaaa tatcctacga acggtatgaa tttgagagat tggaactgca
      721 acaagcaagg aatcacccat agaaagttgg ctatttcctt tcacaatcct tgacttacca
      781 tgatgaattt gactggtgat caagcatgaa tccggtaaac gtaactcgct aacaaatctt
      841 ctgtccaatg tttcgttgac aacaacctct attaaggtca tgtgttcttg ctgttctact
      901 tcttctggca gaattttttc caacattgct tcatagactg gcgcgccacc taagaggtcc
      961 atcatcacat aggaactcaa agctaccaac ccgatgacca tcaattggtt caaacttcca
     1021 accatttcag ttactaaaat aatagcagtt agaggtgctt tggaaatcgc tgcgaaaaag
     1081 cctgccattc ccaatacaat aaacaatagc atctgctcct gactgatgaa accaatatca
     1141 aggaagaacc gtgcgacaaa aagcccaagg agacttccta aggttaatat gggtaaaaag
     1201 atgccccctg gtagaccaga accataggaa atcatgctcc atacaaatcg tattaaaatc
     1261 aagattgcca atgtcagtag tccttgttcc aaatatggaa gctctaaaat caaatgatgc
     1321 ccgccaccca atagattagg gaaaaaataa ccaatcggta taataaacaa aaaggcaaat
     1381 acactgtagt atggaactgg gagaggaatg atttttgaga gaagggtata gaaaccttgt
     1441 atattgagga taacaacttc atacacatat ccagcaagtc caaggaaaac tccaagtaag
     1501 atatagatcc aatattggtc aagagatagt aactgtaagt ccttcggcat atgcaaaaca
     1561 ggcattaatc caaaaaaatg taaggaaata aagttcgcag tgatactggc tgccagggct
     1621 gagacccata ccagacgtga aaactgatga tagacttcct ccacaacaaa taaaagtcct
     1681 gctattggtg cgttgaaagc tgctgccaaa cctgccgcag cgccactagc aatcaaactc
     1741 cttctttcca tttcactgga tttaagaaga actgatatac ctttagccgt tacagctcct
     1801 aattgaatac tgggaccttc acgccccagc attagaccag acgcaatgga taaaacaccg
     1861 ccgataaatt ttctccaaag gactgaccac cagtttaaat ccataattcc ttttagttct
     1921 gcctccacct gaggtatacc agaacctttt gtatttggct cgtctttgat caacttgcca
     1981 acaagtaaag ctatgaccag ataaagccct ccaataagaa gtaaatagat tgcattgtct
     2041 gttgccagag aatagaggtg cgtaaagaca gaaaatagtt tttcaatggc taagcgaaat
     2101 gcaacgacca ctaaaccagc gacaatgcca actaaaccac cacgcagaac cgagtagagg
     2161 atcgattgag aaataaaact aacttctttc cggtgatttt ccattgggat ttcccttcct
     2221 ttctatagta tgtatgacca aaaaatagga gcaataagta cttagtaaag aacctcactc
     2281 ccattctttt atttatattg ctacctgtcc aatcagacta tttccgatac atcttgaatt
     2341 ggagatagag gtcattatac attccaagta tctctggtcc aagattatca taaacttcca
     2401 tcttcttcat cgtttcttca gatggataga aagattcatc gttctgagtc tcctcatcca
     2461 gcatagcctt ggctgcagga attggtgttg aataaccaac atattctgca ttgcgaagcg
     2521 cattttcagg acgaagcata aaactcataa aggcgtaagc tccatcaata ttttttgctg
     2581 tttttggaat gaccatgtta tcgaaccaaa ggttagaacc ttttgatggt acaacatagc
     2641 gcagattttc atttccatct aacatttcac ttgcctcacc tgagaacgaa acagcaattg
     2701 ctgccgcatc ttgtatcata taacctttta tctcatcagc aacaattgct ttgacatttg
     2761 gagttaaatt ataaagatgt tcagctgctt tttcaatctc tgcaggattt ttagagttta
     2821 agctgtaacc caaagattgc agaccgaagc ccatgacctc acgaacaccg tcgattaaca
     2881 tgatattgtc acggtattct tctgaccaca aatcttccca ttcttgagga ggattttcta
     2941 ccatggtttc attgtaaaca atccccaagg tcccccagaa atatggaata gaatagtcat
     3001 tgttcttatc aaaactcaag cccatgaatt gcggatcgat attctctaaa ccttcaattt
     3061 ttgatttatc tagtttcacg agcatatctt cttccgtcat tttggaaatc atatactcag
     3121 aaggaacggc caggtcatag gtagttcctc cctgcttgat tttagtgtac atggattcgt
     3181 tggaatcaaa ggtctggtaa tccacctgaa tacctgtttc agccgtaaat tcttccagca
     3241 attctgggtc aatataatcg ccccagttat agatgacaag tttatcagtt gtcccttggg
     3301 ttgaatctgc ttctaatttt gaactaattc cccataaaac taggacaata gctataattc
     3361 ctacaaaaaa tgaatacaat cgtttcatta gttggcctcc ttttcacgcg agatgaaata
     3421 ataacccact accaataaga tagagaaaag gaaaactagg gttgacaagg cattgatttc
     3481 caaagaaatc ccttgacgtg cccgagaata aatctcaaca gataggtttg agtaaccatt
     3541 tcccgttaca aagaaggtca cagcaaagtc atccaaggaa taggtaaagg ccatgaaata
     3601 acctgcaata attgctggcg ttaggtaggg caacatgatt tctttcagca tttgtggctg
     3661 agttgccccc aaatcataag ctgctgaaat catatcggca ttcatttcct tcaaacgtgg
     3721 caagaccatc aagaccacga taggaataga aaaggcaatg tgactgagca atactgaaac
     3781 aaagccaagc tggaaaccaa tcatggtaaa gagaattagg aaacttgccc caatcatgac
     3841 gtctggagcg accatcaaga tattattgac agacaagagt gcattttgaa aacgaggttt
     3901 tgcctgatag atatagatgg caccgaaagt tccgataagg gtcgcaatca aagaactcaa
     3961 gaaggccaag aaaaatgttt gcgccaaaat cagcatcaga cggctgtcac ccaacatgga
     4021 cgaaaaatgc tccaaggtaa agcctgtaaa tccattcata tccccgcctt cattaaaggc
     4081 atagaaaatg agataaaaaa tcggcaagta gagaaggaga aaggcaactg ttaagtagat
     4141 atttgcaaat ttcttcatta tttcttcctc tctttcgtca tccacataat caagagcatg
     4201 gccaaaatca agaccacacc aatggttgaa cccattcccc agttttgagt ggtcaggaaa
     4261 tgttgctcga tggctgttcc caaggttatc actcggttac caccaattaa acgggtcaac
     4321 atgaagaggc tcagacttgg aatgaaaacc gcctgtacac cagaacggac accattcata
     4381 gaaagaggaa aaataacttt tgtgaaggtc tgccaaggag ttgctcccaa atcacgactg
     4441 gcattgatta ggtttttatc caaatcatcc aaggcgttaa agatcggcaa aatcataaac
     4501 ggaatctcga tataggctgc aacagcaata aaggagaaat ctgtgaaaag aatttgctga
     4561 gctcctagac caataaattc taggaactgg ttgatagagc cgtgttgtcc aaaaataccg
     4621 ataaaggcat aggctttcag caaaagattg acccaggttg gcaagataat caacatgagc
     4681 cagagttgtc tatgcttgag cttggtcaag aaataggctg ttgggtagga aaccaaaagc
     4741 gtgaccagag taataatacc tgcgtaaaaa atagagttaa aactcattcg cagataggtc
     4801 atatttggcg agttaaaata ggtctggtaa ttggccaaag tgaaattgcc atgaatatca
     4861 aagaaagatt tgaagataat caaggcaact ggagcaagta caaagagaaa gatccatagg
     4921 gcgtagggaa ttgcaaaaag cctagaggtt ttcttcattg cgttcctcct caatggcgtt
     4981 aatcaagcca tcttctactt cttccacttc cacatattct tcgatacggg catcgaattc
     5041 ttcctctgtt tcattaagac gcatgatatg aatatcttct ggctcaaaac ttagtccaat
     5101 cacttctccg acaatagcct tacgagttga gtgaatcatc cactcattac cgaggtcgtc
     5161 ataggcaatg atttcatagt gcaccccacg gaagagctga gtatccactt ttacctgcaa
     5221 tttgccttct tcagggaggg taatctgcaa atcttctgga cggatgacga cttcaacttc
     5281 ttcattagga cgcataccgc catcgacagc ttcaaagcgt ttgccgttaa actcaaccag
     5341 atagtcttct atcatgcgac ctggaaggat attggattca ccgatgaagg tagcaacaaa
     5401 atggttgatt ggctcgtcgt aaatgtccac tggcgtccca gactgaacaa tttcaccttc
     5461 attcatgaca aaaatccagt cactcatagc cagagcttct tcttggtcat gggtaacgaa
     5521 gacgaaggta attcctagac gttgttgcaa ttcacgcagt tcgtactgca tttctgtacg
     5581 gagtttcaag tccagggcag aaagtggttc atctagcaag acaacgcgag gctggttgat
     5641 aatcgcacgt gcaatagcaa cccgctggcg ttgaccacca gacaatttct gaatggaacg
     5701 attttcataa ccagaaagtc ggaccatttg taaggcttct gtcacacggc gttcgatttc
     5761 agccttgtca acctttcgta atttaagagg aaaagccaca ttttcaaaga cagtcatatg
     5821 tgggaaaagg gcataggact ggaaaacagt atggacatcc cgtttattag tcggaacatc
     5881 attaatccgt tgaccatcca gataaatatc acctgaactc gcatccaata aaccagcaat
     5941 aatgttcaaa atcgttgatt tacctgaacc agaagctcct aaaagggtat aaaatttccc
     6001 ctcttccaat tcaaaactaa tgtcctttaa tacagttgtt ccactgtctt caaatacttt
     6061 tgaaacgttc ttaaattcaa taattggctt tttcaattct cataaattcc ttcttttttg
     6121 taagagccta atggctagag tttagtcttt cagtttgctt ttagtactag gcaacgagct
     6181 gcagacagta ctaaagtacg gcaaagcgag ttaacgacgt aataaaagat aaactgaaag
     6241 actatgtatc agatgggtcg ccgataatac gcacctctct ctccagcgta atgcctgaag
     6301 atttttcaac aacatcaatc acatgtgcaa tcagattttc ataatccttt gctgtaccat
     6361 tgtcgacatt gaccataaaa cctgcgtgtt tttcagatac ttcaacacca ccaatacggt
     6421 agcctttcaa accagcttcc ataatcaact gacctgcaaa gtgaccaagt ggacgtttga
     6481 agactgaacc acaagatgga tattccaaag gttgcttgag ctcgcgtaaa tgtgtcaaac
     6541 gagccatttc ttgttgaata accgtatgat ttcctggctt gagggcaaat tttgcagaca
     6601 aaacaatcgc accgttttcc tgcaaaatag aagaacggta gccaaatcgt aactcacgat
     6661 tgtccaatgt ctcgacataa cctgcaggag tcaaaatctg cgctgaaact agaatgtgtg
     6721 ccacttcacc tccgtaagca cctgcattca tgtagacagc accaccaatg cttcccggaa
     6781 taccacaagc aaattcaaat cctgataaag aatggaaaag tgcaactttt gttgtttcaa
     6841 tcagattggc acctgcttct gcttcaatgg tgtatcctga tacagtaacg gagttaagtt
     6901 tatccatacg gataacaaaa ccacgaatac cgccatctcg gacaatgata ttacttgaat
     6961 ttcctaatac ttgccatgga ataccttcgc gtttagcaaa ttctactata cgaacaatct
     7021 cgtaacgatt ccgcggaaaa gctagataat caacagctcc tcctactttt gtataggtat
     7081 attcttttaa aggttcatcg aatcgaatat cgatgccttc taattcaagc ctaattttat
//
LOCUS       DASGAC010000110         7015 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.110, whole genome shotgun sequence.
ACCESSION   DASGAC010000110 DASGAC010000000
VERSION     DASGAC010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 7015)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7015)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7015
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.110"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            176..397
                     /locus_tag="U1335_001593"
     CDS             176..397
                     /locus_tag="U1335_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001100856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HEM5232055.1"
                     /translation="MNVLLRKTGNSTVITIPNAIKEVLGAEIGEEIEFVTSGNNVIIR
                     KAEPTFDFDKELEKAMSQYDELLKELVDK"
     gene            394..801
                     /locus_tag="U1335_001594"
     CDS             394..801
                     /locus_tag="U1335_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
                     /protein_id="HEM5232056.1"
                     /translation="MKYLSAEDIIKINVMVIGKYSPKEPVGIADPNSLQMIVEQPKQE
                     IFGKIFYPDIYSKAAIIWINLIKKHPFKNANKRTAVLSLHMFLAMNGYQSNLSLNDGL
                     EKTIEIATFQGDFEELKDRIIQFLKEEKRVYKK"
     gene            complement(941..1495)
                     /locus_tag="U1335_001595"
     CDS             complement(941..1495)
                     /locus_tag="U1335_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002303614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232057.1"
                     /translation="MVARSQYLQTLIKDVMDNSDSNDWDSAVTEWEISDAEEDELLEE
                     SCICGKEHLRYLFTIENQLNGNVLYPIGSSCIKKFERDDLKYEVDVKVQLFKLLHAVE
                     DNEFLQLSSKFFSRKLLRYLFEVGAFKATKWNDFEPEKDYEFMIDMFNRHDRTEKQNK
                     KAVAIILTSIKPFLQEELAHKVKK"
     gene            complement(1519..3348)
                     /locus_tag="U1335_001596"
     CDS             complement(1519..3348)
                     /locus_tag="U1335_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014678202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HEM5232058.1"
                     /translation="MISFTKYIKKTFYNEIYEASEEYLLAHLEELGITCDYDDEVEIT
                     DIDFKSIYAGRRGDGEIDIEILTHVHAEVTNHTNDDERTSDKHCWFRVSAIGRPDAGI
                     KNFRIVKVKRHKKGTYRRFKYPLSNQLVPIIGKGDLDKVAEAILKKYDPNTLVTPTRV
                     EPENIVQQMGLQLRYDSITEDTSIFGQIYFQDNTEKGISAGTVIIDEKLSQIRNLGVV
                     RNTIVHECVHWELHRYALELARADEEIISVLSTTDGINDENVSDMIGWMEWHAESIAP
                     RILMPKEMFIQEARTRYQRLLELNQTQDDLEIVDKWIDGLAQFFGVSRLSAKVRLVEC
                     GFELAKGSFIYLDNAYVPTHTWKPGYLKDTQTFSISLIQLGSQLLSQPTLKECVEKGQ
                     LLYVESHLCINDTKYILYDAEGKPFLTPYARQHMDECCVVFEISSNAQTGRSTDLTLL
                     LNRDADSDIQFTVSYAKDKDNWLEQVDVHIDDTLEIMLKLSGMNVFAPALVEVMKWRD
                     VRNQELADKSYLGLKAISNLRNGKTEPKLETVIAICVGMKLPPSISKMLVELSGRTLR
                     VGNPKERLYDFILNCTASWNVNMCNTLLVNKGFKELVPDRSGL"
     gene            complement(3522..5054)
                     /locus_tag="U1335_001597"
     CDS             complement(3522..5054)
                     /locus_tag="U1335_001597"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232059.1"
                     /translation="MKFNKKAILFAATMATSVLVSAAASADTVIHRAYYPGNGAHLWT
                     SDTNEVNVLTTSRGWKNEGVAWVSPDKGETVTRLYNPVLKKHLYTKDQNEVKVLTSQH
                     GYRNEGQVFKSGGSTPIYRLYNPKLSPVASHHYTTDKNEYDTLAAKHGWKKEGVAFYA
                     NGKTLPSAPAQNGSTNPSGNTKPGTSTGTQTQPSKPAQPAQPSGTKPSQPATTTGSST
                     STSTGSSTQTQPAKPVQPTTPATPDKQFTRYTEIYNGSRKLERKSGTVTVYPDRTTQT
                     GGYEVYQDQNGNLYSYEPDNPINGSEYHAMGFTENGRVRNMTVNDWATWDKANQLQAN
                     IYANQAAIQDYWMKRVTEIRQAEGRPITAENSKPDMSSDMLNFSKARIEEQRNVGSYY
                     GWDENQGGMVAAHTRPIYGVYRDVDFLLPENANINVNDPNAYLLRQSGELSTASRDLT
                     YTQATDFRLIIEDALTSWKRSPGHWNGIMGSQRPQFLSIGIYPNQNGTYSTVVHAHEL
                     SY"
     gene            complement(5117..5554)
                     /locus_tag="U1335_001598"
     CDS             complement(5117..5554)
                     /locus_tag="U1335_001598"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232060.1"
                     /translation="MNEIFKDGYYLGATYVIILILAIISKEEYGKVSKIATILFATLI
                     FIFSILDISLNQEIRSIGVSIGLGAFVCIFSSGLICILMLIGDNRPVLEDMEKVLNKD
                     TLQATSRKGLAIAKRVARLSGRITQSAVSEIKKEIAKKGNEEQ"
     gene            complement(5698..6537)
                     /locus_tag="U1335_001599"
     CDS             complement(5698..6537)
                     /locus_tag="U1335_001599"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232061.1"
                     /translation="MKRIFAAIVALATTISLGACSNNAPGQSQNQFGTTESHEVAIGE
                     YLQKNSKVPLLWVVVDGTTPDKEMDVREAFVFKDGKVKSYNFGDEDRIDLTLGELAKL
                     DTKEAIQLLEENYYSKLRTLYQNKLEYWRDHEVADSSDLMEDSVTAEDKQKIISELES
                     FKSVLDSHKLKSFPYSINLETDSSGNFTSIEHINFDTEQIYVGEYLYEGSGTGFSTEE
                     KEMELTYTYFGENMIYDTPYAVFSTEMSDRLVLLSLKHETAPYPTLVFDEPDTKLENV
                     TID"
BASE COUNT         2091 a         1363 c         1232 g         2329 t
ORIGIN      
        1 catctaattt catcaaaata aggtacattt tcaatcaaaa tatgcaaaat cggacaagaa
       61 aatacaaaag tttaccttat tattgattct agaaactggg ttaaaacaat gtattcactt
      121 ttaatttttg tatatatctt gtataatgta tttacaaata caggaggtat atccgatgaa
      181 tgttttatta cgcaaaacag gtaatagcac tgttatcact atcccaaacg ctataaaaga
      241 agtacttggt gctgaaattg gtgaagaaat cgaattcgtc acttcaggaa ataatgtcat
      301 catccgtaaa gctgagccaa catttgactt tgacaaagag ttagaaaaag ctatgagcca
      361 atacgatgaa ttattgaaag agttggtaga taaatgaaat acctatccgc tgaagacatt
      421 atcaaaatca atgtcatggt tattggaaaa tattccccaa aggagcctgt tgggatagct
      481 gacccaaaca gcctgcaaat gattgttgag cagccaaaac aagagatttt tggaaaaata
      541 ttctatcccg acatttatag taaggctgcc attatctgga taaacctaat taagaaacac
      601 ccattcaaga acgccaataa gcgaactgct gtactttctt tacacatgtt tctagcaatg
      661 aatggttatc aatccaatct ttccttaaac gatggactgg aaaagacaat cgagattgct
      721 acatttcaag gcgactttga ggaattaaaa gacaggatta tccaattctt gaaagaagaa
      781 aaacgagtat acaaaaaata gaaaagttta ctttgtttat tataataaaa taattttgta
      841 aattctactt ccactatttc attcctctaa acagtcgaaa tagcgaagtc ttttcgattg
      901 ggaagaggaa tccaaaaggc aggttcgcac ctgcctttat ctattttttt accttatgag
      961 ctaattcttc ttgtaggaat ggttttattg atgttagaat aatagcaacg gcttttttat
     1021 tttgtttctc agttcgatca tgtctattga acatatcaat catgaattca taatcttttt
     1081 ctggttcaaa gtcgttccat ttcgttgctt taaatgctcc aacttcaaat aaataacgca
     1141 ataatttacg actgaaaaat tttgatgaca attgaagaaa ttcattatct tctactgcgt
     1201 gtaacaactt aaataattgt actttgacat ccacttcata tttcaaatca tcacgctcaa
     1261 acttcttaat gcaagaacta ccaataggat aaagtacatt accattcaat tgattttcaa
     1321 ttgtaaaaag gtaacgaaga tgttctttac cacatataca tgattcttct aatagttcat
     1381 cttcttctgc atctgaaatc tcccactctg tgactgctga gtcccagtca ttggaatcag
     1441 agttatccat aacgtcttta ataagagtct gcaaatattg acttcgtgct accataatgt
     1501 aagacctctc tatttatttt ataagccact tctatcagga acaagctctt tgaagccttt
     1561 gttgaccaat agtgtattac acatattcac attccagctt gctgtgcaat taagaatgaa
     1621 gtcatacaac ctttctttcg gatttcctac acgaagtgtt cttcctgata gttcaactag
     1681 cattttactg atacttggcg gtaatttcat tccaacacaa atggcaatca ccgtttcaag
     1741 tttgggttca gtctttccat tcctcaagtt ggaaatagcc ttcaatccaa gataactttt
     1801 atcagctaat tcctgatttc taacatcacg ccacttcatc acttcgacta atgcaggagc
     1861 aaaaacattc atcccactaa gctttaacat aatttccagt gtatcatcaa tgtgaacatc
     1921 aacttgttcg agccaattat ccttatcctt cgcataacta accgtaaatt gaatatcaga
     1981 atctgcatca cgattgagta ataaagtcaa atctgtagaa cgtcctgttt gggcattaga
     2041 agaaatttca aatacaacac agcattcatc catatgctga cgtgcgtatg gtgttaagaa
     2101 tggcttccct tcagcatcat ataaaatata cttggtatca ttgatacaga gatgggattc
     2161 tacatagagc aactggcctt tttcaacaca ctcttttaag gttggttgag ataacaattg
     2221 tgaacctagt tgaataagac tgattgaaaa tgtctgagta tcttttaaat aaccaggttt
     2281 ccatgtatga gttggaacat aggcattatc taaatagata aatgagcctt tggctaattc
     2341 aaagccacac tctaccaatc gaacttttgc agataggcga gacactccga aaaactgagc
     2401 tagtccatca atccatttat ccacaatttc aaggtcatct tgggtttggt tcaattcaag
     2461 aagtcgttgg tatctagttc tcgcttcttg aataaacatc tctttgggca ttaaaattct
     2521 tggtgcaatt gattcagcgt gccattccat ccaaccaatc atatcagaaa cattttcgtc
     2581 attaatacca tctgtagtag aaagaacaga aataatctcc tcatcggctc gtgccaactc
     2641 taaagcatag cgatgcaact cccaatgaac acattcatga acaatcgtgt tcctcacaac
     2701 tccaaggttt cgaatctgag atagcttttc atcaatgata accgtccctg ccgagatacc
     2761 cttttcagta ttgtcttgaa aataaatctg tccaaaaatt gaagtatctt ccgtaatgga
     2821 atcatacctt aactgaagtc ccatctgttg aacaatattt tcaggttcaa cccttgtagg
     2881 tgtcaccaag gtatttgggt catacttctt caagatagct tctgccacct tatccaaatc
     2941 acctttccca ataattggta caagttgatt agaaagagga tacttaaagc gtctataagt
     3001 tcccttctta tgtcttttaa ctttgacaat tctgaagttt tttattcctg catccggtct
     3061 cccaatagct gatacacgga accaacaatg cttgtcgcta gtcctttcat catcattagt
     3121 atgattcgtt acttctgcat ggacatgcgt caaaatttct atatcaatct cgccatctcc
     3181 acggcgtcca gcgtaaatag acttaaagtc tatatccgta atttctactt catcatcata
     3241 atcacaggtg atacctaatt cctcaagatg ggctagaagg tattcctcac tagcttcata
     3301 aatttcatta taaaatgttt tcttaatata tttggtaaaa gaaatcaagt tccctcctat
     3361 aatcaatcat acgatataat atacttactt acttatgagt tatggtatac attcctaaaa
     3421 aactctagcc tattctagag tttttgagag gtattttgtt acaaattacg tagtgtatta
     3481 agtaatttta gttaacaatg tttatttgtt atagtatatt actaataaga aagttcatgt
     3541 gcatgtacta cagtactata ggtaccgttt tggttaggat aaataccaat agaaaggaat
     3601 tgtggtcgtt gggatcccat aataccgttc cagtgacctg ggctccgttt ccacgatgtg
     3661 agagcatctt cgataatgag acggaagtct gttgcttggg tataagtcaa atcacgtgaa
     3721 gcagtagata gctcaccact ttgacgtaag aggtaggcgt tagggtcatt tacattgata
     3781 ttggcatttt caggaagaag gaaatcgaca tcacgatata caccatagat agggcgagta
     3841 tgggctgcaa ccattccacc ttggttttcg tcccatccat agtaagaacc gacgttacgt
     3901 tgttcttcaa tgcgagcttt agagaagtta agcatatctg agctcatatc tggtttagaa
     3961 ttttcagcag taattggacg accttctgct tgacggattt ctgtcacccg tttcatccag
     4021 tagtcttgga tggcggcttg gttagcatag atattagctt gaagctggtt agccttgtcc
     4081 caggttgccc agtcgttgac tgtcatgtta cggacacggc cgttttctgt gaagcccata
     4141 gcatggtatt cgctaccgtt aattgggtta tctggttcat agctatagag gttaccattt
     4201 tggtcttgat agacttcata gccaccagtt tgagtagtac ggtctgggta gacagtcacc
     4261 gtaccagatt tgcgttccaa cttacggcta ccgttgtaga tttctgtgta gcgagtgaat
     4321 tgcttatcag gagtagctgg agtagttggt tgaactggct tagctggttg tgtttgagtt
     4381 gatgaaccag ttgatgttga tgtgcttgag ccagttgttg tagcaggttg gcttggtttt
     4441 gtgccagacg gttgagctgg ttgtgctggt ttagatggct gggtctgagt accagttgat
     4501 gtgcctggtt tagtgttgcc agatgggttg gttgaaccgt tttgagctgg tgcacttgga
     4561 agagttttgc catttgcgta gaaggctaca ccctcttttt tccaaccatg ttttgcagcg
     4621 agtgtgtcat actcgttttt gtctgttgta tagtggtgag atgctaccgg tgacaatttt
     4681 ggattgtaga ggcggtagat cggtgttgaa ccaccagact tgaagacttg gccttcgttg
     4741 cggtagccat gctggctagt caacacttta acttcgtttt ggtctttggt gtagaggtgt
     4801 ttctttagaa ctgggttgta gagacgggtt acagtttcac ctttgtctgg tgatacccag
     4861 gctacacctt catttttcca accacgagaa gtggttagga cattgacttc atttgtgtcg
     4921 ctggtccaga gatgggcacc gttacctgga tagtaggcac gatgaatcac tgtgtctgct
     4981 gaagcagcgg cagataccag aacacttgtt gccattgttg cggcaaatag gatagctttt
     5041 ttgttgaatt tcatgtgaaa taactccttc tttttttgtt tgttttatgg tttggtgagg
     5101 tgaggtaggc aataaattat tgctcctcgt tgcctttttt agctatttct ttttttattt
     5161 cagaaactgc tgattgagtg attctaccag aaagccttgc aaccctttta gcaatagcga
     5221 gacctttacg actagtagct tgaagggtgt ctttattgag cactttttcc atatcttcta
     5281 gaactggtcg attatcacct atcagcataa ggatacaaat aagaccggaa gaaaaaatac
     5341 aaacgaatgc acctagtcca atggataccc ctatacttct aatttcctga ttcaagctga
     5401 tatcaagtat agaaaaaatg aaaatcaatg tagcaaaaag tatcgtcgca atcttactaa
     5461 ccttgccgta ttcttctttt gagataatag ctaaaattaa tatgattaca taagtagccc
     5521 ctaaataata tccatcttta aaaatttcat tcacagcatt caagtactca tcttgaaact
     5581 gaaaccatgg cataaagata gatacaatgc caaaagtgca catatagcaa caaaaagtct
     5641 tttattattc aattgatatc tcctcgtaaa atatatttgg tacgtcctac ttaaccatta
     5701 gtctatagtg acattctcca gtttggtatc tggctcatca aagacaagtg tcggatatgg
     5761 tgctgtttca tgctttagtg acaacagaac tagcctatcg gacatctctg tagaaaatac
     5821 cgcatatggt gtatcataaa tcatattttc accgaaataa gtataagtaa gttccatttc
     5881 tttctcttct gtactaaatc cagtgccact accttcatac aaatattcac cgacataaat
     5941 ctgttcagta tcaaagttaa tgtgttctat actggtgaaa ttccctgaag agtctgtttc
     6001 caaattaatt gaatatggaa atgattttaa tttatgagaa tctagcacgg acttaaatga
     6061 ctctaattcg gaaataattt tttgcttatc ttccgctgtt acagaatctt ccattaagtc
     6121 acttgagtcg gccacctcat ggtctctcca atattcaagt ttattctgat aaagcgtcct
     6181 aagtttacta tagtaatttt cttcgagtag ttgaatcgcc tcttttgtat ctaatttggc
     6241 gagttcccct aacgttaggt caatgcggtc ttcatcccca aaattatagc tttttacttt
     6301 tccatctttg aagacaaaag cttctctcac atccatctcc ttatcaggcg ttgttccatc
     6361 aaccactacc caaagtaaag gcactttact atttttttgt aaatactccc caatagctac
     6421 ttcgtgtgat tcagttgttc caaattgatt ctgcgattga ccaggtgcat tgtttgaaca
     6481 agctcctagt gatatcgtag tagccagagc tactattgct gcaaatattc ttttcatata
     6541 attttccttt ccaatcatgg tattaaacca tataatgttg ctatgctact ctgtactgta
     6601 gtaatggatt gcttcaaaac ctagaaacca taaatagcct cctttcttct tgtatattat
     6661 atcaatttta ctaaaaaaaa aaagcatttt tctattaaaa tcacaccgta tacatgaaga
     6721 agatacatgt aactgttttc tagctactta catttgtcct tttcttctct cctcacaagc
     6781 ctctttcaaa aactcctaaa tataagcgat tgctccgact ttttatgcgg aagtttgtta
     6841 cagcctatat acattacaaa acaccctctt ttcaaaaaag atagggtgtt tttgtgtacc
     6901 acgattttaa tctccttatc aacgtgcttc tttacggtta cattacacca taaaggactt
     6961 tagaaaaatt ttaagattgc taaaaaaaaa taacccagca agtcattttt tcggg
//
LOCUS       DASGAC010000111         6851 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.111, whole genome shotgun sequence.
ACCESSION   DASGAC010000111 DASGAC010000000
VERSION     DASGAC010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6851
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.111"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(70..1095)
                     /gene="trpS"
                     /locus_tag="U1335_001600"
     CDS             complement(70..1095)
                     /gene="trpS"
                     /locus_tag="U1335_001600"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEM5232062.1"
                     /translation="MSKPIILTGDRPTGKLHIGHYVGSLKNRVLLQDAGQHELFVFLA
                     DQQALTDHAKEPQKIVESVGNVALDYLAAGLDPAKTTIFIQSQIPELAELTMYYMNLV
                     SVARLERNPTVKTEIAQKGFGEGIPAGFLVYPVSQAADITAFKANFVPVGNDQKPMIE
                     QTREIVRSFNHAYQTDILVEPEGIYPENEAAGRLPGLDGNAKMSKSLGNGIYLADDMD
                     TLKKKVMSMYTDPNHIRVEDPGKIEGNMVFHYLDVFGREEDKAEIEAMKEHYQRGGLG
                     DVKTKRYLLDILERELGPIRERRLEFVQDMGQVYAMLEAGSQKARQVAATTLDQVKSA
                     MGINYFK"
     misc_binding    complement(1142..1348)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            1450..2322
                     /locus_tag="U1335_001601"
     CDS             1450..2322
                     /locus_tag="U1335_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM5232063.1"
                     /translation="MKERIKDFISVTLGSVVMAIGFNSFFLENNIVSGGVGGLAIALN
                     ALLGWSPSDFVLYCNIPLLIICWFFLGKSVFIKTVYGAIIYPLCIKLTAGLPNLTENP
                     LLAAIFGGIILGFGLGLVFLGNSSTGGTGILIQFIHKYTPLSLGLTMAIIDGIIVGLG
                     FVAFDTDTVMYSIIALMTITYIVNRMISGTQSSRNVMIISQKSEEIKDYITKVADRGV
                     TELPIIGGFTGVDKRMLMTTTSIPEMQKLETAVLEIDETAFMVVMPASQVRGRGFSLQ
                     KDHKHYDEDILIPM"
     gene            2387..4009
                     /locus_tag="U1335_001602"
     CDS             2387..4009
                     /locus_tag="U1335_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM5232064.1"
                     /translation="MLTVSDVSLRFSDRKLFDDVNIKFTAGNTYGLIGANGAGKSTFL
                     KILAGDIEPSTGHISLGPDERLSVLRQNHFDYEDERVIDVVIMGNEQLYSIMKEKDAI
                     YMKEDFSDEDGVRAAELEGEFAELGGWEAESEASQLLQNLNISEDLHYQNMSELTNGE
                     KVKVLLAKALFGKPDVLLLDEPTNGLDIQSINWLEDFLIDFENTVIVVSHDRHFLNKV
                     CTHMADLDFGKIKIFVGNYDFWKQSSELAAKLQADRNAKAEEKIKELQEFVARFSANA
                     SKSKQATSRKKMLDKIELEEIIPSSRKYPFINFKSEREIGNDLLTVENLKVVIDGETI
                     LDNISFILRPGDKTALIGQNDIQTTALIRALMGDIEYEGTVKWGVTTSQSYLPKDNTR
                     DFDTNESILDWLRQFASKEEDDNTFLRGFLGRMLFSGDEVNKPVNVLSGGEKVRVMLS
                     KLMLLKSNVLVLDDPTNHLDLESISSLNDGLKAFKESIIFASHDHEFIQTLANHIIVI
                     SKNGVIDRIDETYDEFLENAEVQAKVQELWKA"
     gene            4317..>6851
                     /locus_tag="U1335_001603"
     CDS             4317..>6851
                     /locus_tag="U1335_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhO family protein"
                     /protein_id="HEM5232065.1"
                     /translation="MKKIFTKTSIYYLLSFLIPLTIISIVLAFQGIWWGSDTTILASD
                     GFHQYVIFNQTLRNTLHGDGSLFYTFSSGLGLNFYALSSYYLGSFLSPIVFFFDLQSM
                     PDAIYLVTIVKFGLTGLSTYFSLKGIHKNLKEEWALLLATSFSLMSFSTSQLEINNWL
                     DVFILLPLILLGLHRLLKKQGSILYYITLTYLFIQNYYFGYMVAIFLTLWTLVQLSWI
                     DSQRIKRFINFTIVSILSALSSMFMLLPTYLDLKTHGETFTKIVNLKTEDSWYLDFFA
                     KNLVGSFDTTKFGSIPMISVGLVPLILALLFFTLKEIKPTVKLSYALFFTFIISSFYL
                     QPLNLFWQGMHAPNMFLYRYAWALSITVIYLAAETLAQLRQVSINNFTLIVSFLLICF
                     TSTFIFRDHYEFLTDVNFLLTLEFLIAYFILFVAMIRYKSSLKWINIVLLFFTFLELG
                     LHSHYQVQGISDEWHFPRRSNYEEKLTDIDSIVKSTKTTTDSFYRIERLLPQTGNDSM
                     KFNYNGISQFSSIRNRASSSVLDKLGFRSDGTNLNLRYQNNTIIADSLFGVKYNLATT
                     DPNKFGFTLNQSQSTINLYENSFNLGLALLTEGIYKDVNFTNLTLDNQTNFLNQLTGL
                     SQKYYHTLSDVVSQNTVELNNRMTVNKVDNEDAAKATFLVNIPANSQVYLNLPNLTFS
                     NENQKKVVITVNNQSSEFTLDNAFSFFNVGSFTTDVQVQVDVYFPENNQVSFDKPQFY
                     RLDLLAFQQAISILQEKQVVTKTDGNKVTVDFVTDKEASLLLTLPYDKGWNATIDGKP
                     IKIQKAQDGFMKVDVSPGQTKLVLTFVPNGFYLGLLISFGAVFVFFS"
BASE COUNT         2052 a         1410 c         1200 g         2189 t
ORIGIN      
        1 ttttttgcta cgtcgtaaaa caaatgaaaa aagcaacgtt tttatgacat tgctctttca
       61 ttgttagcct tatttaaaat agttaattcc catagcagat ttcacttggt caagagttgt
      121 cgcagcaact tggcgagctt tttggctacc tgcttccaac attgcataga cctgtcccat
      181 atcctgtaca aactccagac ggcgttcacg gattggtcct aattctcttt ctaaaatgtc
      241 cagcaaataa cgtttggtct tcacatcgcc caaaccacca cgttgatagt gctccttcat
      301 agcctcaatc tcagccttat cttcttcgcg accaaaaaca tcaagatagt ggaaaaccat
      361 atttccttca atcttacctg gatcttcaac acggatgtgg ttgggatcag tatacatgga
      421 catgaccttc ttcttgagcg tatccatgtc atctgccaga taaataccat ttccaagtga
      481 cttagacatc ttggcattgc cgtccaaacc tggcaagcga ccagctgcct cattttcagg
      541 ataaatgccc tccggctcta ccaaaatatc agtctggtaa gcatggttaa agctacgaac
      601 gatttcacga gtctgctcaa tcataggttt ctggtcattt cctactggaa caaagtttgc
      661 cttgaaggct gtaatatccg ccgcttgtga cacaggatag accaagaaac cagctggaat
      721 tccttcgcca aatcccttct gagcaatctc agtcttcact gtaggattgc gttctagacg
      781 tgcaacagat accaagttca tgtagtacat ggtcaactct gccaattcag gaatttgact
      841 ctggatgaaa atcgttgtct tagctggatc aagtcctgcc gctagataat ctagtgctac
      901 gtttccaacg gattcaacaa tcttttgcgg ttcctttgca tgatctgtca acgcttgttg
      961 gtctgctaaa aagacaaaaa gttcatgttg acctgcatcc tgtaataaaa cacgattttt
     1021 caacgaacca acataatgtc caatatgtaa tttgcctgtt ggacggtccc ctgttaggat
     1081 aatcggttta ctcataaaat attctccttt tacataataa aagcccacgc acagaaaact
     1141 gtgcgagggc gtcaaggaca cggtgccacc tcacttataa gcattaaata agcttacatc
     1201 tttttgcaca taaggcctgc tagccgaatc cttatttatt cagattctat tcactcagtc
     1261 cattcataag cgactcttgt ttgtttacac caaccacaaa ctctctaaaa attatccact
     1321 tactactctt ctgattgatt cctattataa ccgcaaaaaa ttagaaagtc aagctgacaa
     1381 agccttgacg atactgtcta aattagggat aatagaaatt gcttttataa cactaaccaa
     1441 ggagaatata tgaaagaacg tataaaggac tttatctctg tcacactcgg atcagttgtc
     1501 atggccattg gatttaacag tttttttcta gagaataata tcgtatctgg tggtgtcgga
     1561 ggtttagcaa tcgcactcaa tgctcttctg gggtggagtc cgtctgattt tgtcctctac
     1621 tgtaacatcc ctttattaat catctgttgg tttttcttag gaaaatctgt atttatcaaa
     1681 actgtctatg gtgctatcat ctatcctctt tgcatcaagt tgacagcagg tttacccaac
     1741 ttgacagaaa atcctctcct agctgctatt ttcggtggaa ttatcctagg ttttggactt
     1801 gggcttgtct tccttggaaa ttcttctact ggtggaacag gtattcttat tcaatttatt
     1861 cacaagtaca cccctttatc attaggtctg acaatggcta ttattgatgg tattatcgtt
     1921 ggtcttggat ttgttgcctt cgatactgat acagttatgt actcgattat tgccctaatg
     1981 accattacct atattgtcaa ccgcatgata tctggtaccc aatcttctcg aaatgtcatg
     2041 attatttctc aaaaatcaga agaaattaaa gactatatta ctaaagttgc tgatcgcggt
     2101 gtgacagaac ttccaattat tggtggcttt acaggggttg acaagcgcat gttgatgact
     2161 accacctcta ttccagaaat gcagaaactg gagacagcgg tattagaaat tgatgaaact
     2221 gcctttatgg ttgttatgcc tgcgagtcag gtgcgtggac gtggcttcag tcttcaaaaa
     2281 gaccataaac attatgatga agatattttg attccaatgt aattcattga aaattcaagt
     2341 tctttctagt acaataaaac taatagacag aaatagagga gaaactatgc ttacagtatc
     2401 agacgtgtcg cttcgcttta gcgaccgcaa attatttgac gatgtcaata tcaaatttac
     2461 agcaggaaat acctacggtt tgattggtgc aaacggggcc ggtaaatcta catttttgaa
     2521 aattcttgct ggtgacatcg agccatcaac aggtcatatt tcacttggac cagacgaacg
     2581 cctttctgta ctacgtcaga accatttcga ctatgaagat gagcgcgtga ttgacgttgt
     2641 tatcatggga aatgagcaac tttacagcat catgaaagaa aaagatgcta tttacatgaa
     2701 ggaagatttt tctgatgaag acggtgtccg tgctgctgag ttagaaggtg agtttgctga
     2761 acttggtggc tgggaagctg aaagtgaagc ttctcaattg ctccaaaacc tcaacatttc
     2821 agaagacctc cactaccaaa acatgagcga attgaccaac ggtgagaagg ttaaggtcct
     2881 cttggctaag gctctctttg gtaagcctga tgttcttctt ttggacgagc caaccaacgg
     2941 tctggacatc caatccatca actggctcga agatttcttg attgactttg aaaatacggt
     3001 tatcgtcgta tcccacgatc gccacttctt gaacaaggta tgtacccaca tggccgacct
     3061 tgacttcggt aaaatcaaga ttttcgttgg taactatgac ttctggaaac aatctagcga
     3121 actagcagct aaactacaag ctgaccgtaa tgcaaaagct gaagaaaaaa tcaaggaatt
     3181 acaagaattc gttgcccgtt tctctgccaa tgcttctaag tctaagcaag ctacttcacg
     3241 taagaagatg ttggacaaaa tcgagttgga ggaaattatt ccttctagtc gtaagtaccc
     3301 atttatcaac ttcaaatcag aacgtgaaat cggtaatgac ctcctaacag ttgaaaactt
     3361 aaaagttgtc atcgatggtg aaacgattct tgacaatatc agctttatcc tgcgtccagg
     3421 tgacaagact gctcttattg gtcaaaacga catccaaaca actgctctca ttcgtgctct
     3481 tatgggcgat attgaatatg aaggtactgt caagtggggt gtcactacta gtcaatccta
     3541 cttaccaaaa gacaatactc gtgactttga tacaaacgaa tctatccttg attggctccg
     3601 tcaatttgcc agcaaggaag aagatgacaa taccttcttg cgcggtttct tgggacgtat
     3661 gctcttctcg ggtgatgagg ttaacaaacc tgtaaacgtc ttgtcagggg gcgaaaaagt
     3721 gcgcgtgatg ttgtcaaaac tcatgctcct caagtcaaat gtcttggtct tagatgatcc
     3781 aaccaaccac ttggacttgg agtcaatttc cagtctgaac gatggtttaa aagcttttaa
     3841 agagtccatc atctttgcca gccacgacca cgaatttatt caaactttag caaaccatat
     3901 catcgtcatt tctaaaaacg gtgttatcga ccgaatcgac gaaacttatg atgaattctt
     3961 ggaaaatgct gaagtacaag caaaagtaca agaactttgg aaagcataat aaaaagaggc
     4021 tgggcaaaag tccccagcct ctcttctcag agttcgtgtc aacatctcag cgcagtggtt
     4081 gattgtcaga tttgttcgtg tttcacactc caaatctgac cattacgact gttgcgaaca
     4141 aagttcgcct tatctccaac ctcaaactgt ctcccagaca gtttgagctg tgcgggggtg
     4201 ggagtgaaac agtctgggaa tagactgttt cagctcaaca actagaaata aagacttgtt
     4261 gacgaactct tttttgaccg atcaagtcct ttcccactcc cttttctttt aaatctatga
     4321 aaaaaatatt tacaaaaaca tccatttatt atctcttatc tttccttatt ccgctgacta
     4381 ttatttctat cgtcttagca tttcaaggaa tctggtgggg aagtgataca acaatattgg
     4441 ccagtgatgg tttccatcag tatgttattt ttaatcaaac attacgaaat actttacacg
     4501 gagacggctc tttattttac acattttcaa gtggtttagg actcaatttt tatgctctat
     4561 cctcctatta cctaggctca ttcttatctc caattgtctt tttctttgat ttacaatcca
     4621 tgcctgacgc tatctacctt gtcactattg tcaaatttgg attgactggg ttgtcaactt
     4681 atttcagtct aaagggtatc cataaaaatt tgaaagaaga atgggcacta ttactcgcta
     4741 ctagtttttc tctgatgagt tttagtacaa gtcaattaga aataaacaac tggctagacg
     4801 tttttatact cctcccactc attcttcttg gattgcatcg attattaaaa aaacagggtt
     4861 cgattctcta ttacataaca ttaacatact tatttatcca aaactattac ttcggttata
     4921 tggtggctat ttttctaaca ttatggacat tggttcaatt atcatggata gatagtcaga
     4981 gaatcaaaag atttatcaac tttacaatag tgtcaatttt atctgctcta agcagcatgt
     5041 tcatgttgtt gccaacctat ttggatttaa aaactcatgg tgaaacattt acaaaaattg
     5101 tcaacctaaa aaccgaagac tcttggtatc tggacttctt tgcaaaaaac ttagttggta
     5161 gctttgatac aacaaaattc ggttctattc ccatgatctc tgttggtctc gttccattaa
     5221 tactcgcttt actattcttt acattaaaag aaataaaacc aactgtcaaa ctctcctatg
     5281 ctctattctt tacattcatt atttcaagtt tctacctaca accactcaat cttttttggc
     5341 aaggtatgca tgcgccaaac atgttcctct atcgttatgc atgggctcta tcaataaccg
     5401 ttatctattt agcagcagag acattggcac aactacgtca agtaagtatt aacaatttta
     5461 ctctgattgt ttcattttta ctcatttgct ttacttctac ctttattttt agagatcatt
     5521 atgagtttct aacggatgta aatttcctac tcacactaga atttctaata gcctacttca
     5581 ttctttttgt agcaatgatt cgctataaat catccttaaa atggattaat attgttttat
     5641 tgttcttcac tttcttagaa cttggattac atagtcatta tcaggttcag gggatttctg
     5701 atgaatggca ttttcctaga cgatcaaact atgaagaaaa attgacagat attgacagta
     5761 ttgtaaagtc tacaaagact acaactgatt cattttatcg tatagaacgt ctattaccac
     5821 aaactggcaa tgatagcatg aaattcaatt acaacggtat ttctcaattc tcctccattc
     5881 gaaatcgtgc ttccagctca gtactagata agctcggttt ccgttcagac ggtaccaatt
     5941 tgaatcttcg ttatcagaat aacacaatta ttgctgatag cctattcgga gtcaaatata
     6001 atttagctac tacggaccca aataagtttg gtttcacact gaatcagagt cagtctacta
     6061 ttaatcttta tgaaaatagt tttaatctag ggttagccct attgactgaa gggatttaca
     6121 aagatgtcaa ttttacaaat ctgactctcg ataatcaaac aaatttcctc aatcaactaa
     6181 cagggctatc tcaaaaatac taccacactt tatcagatgt tgtttcacaa aatacagttg
     6241 aactgaacaa tcgaatgact gtcaacaaag ttgacaatga ggatgctgca aaggcaactt
     6301 tcttagtaaa tatacctgca aatagccaag tatacttaaa tttgccaaat ttaacattct
     6361 caaatgagaa tcaaaaaaaa gttgtcatta ctgtcaataa tcagtcaagt gaatttacac
     6421 tagataatgc tttctctttc ttcaatgtgg ggagctttac tacagatgta caagttcaag
     6481 tcgatgtata ttttcctgag aataatcaag tttcttttga taaaccacaa ttttatcgat
     6541 tggacttatt agctttccaa caggctattt ccattctcca agaaaaacaa gtagtaacaa
     6601 aaactgatgg taataaagta accgttgatt ttgtaaccga taaagaagcc tcactcctcc
     6661 ttactttacc ctatgataaa ggatggaatg caaccattga tggtaaacct atcaaaatcc
     6721 aaaaagcgca agatggtttt atgaaagtgg atgtaagtcc aggtcaaact aaactagttt
     6781 taacctttgt accaaatggt ttctatctag gtttactaat ttcttttggt gcagtttttg
     6841 tatttttctc c
//
LOCUS       DASGAC010000112         6793 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.112, whole genome shotgun sequence.
ACCESSION   DASGAC010000112 DASGAC010000000
VERSION     DASGAC010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6793
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.112"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..594)
                     /gene="nth"
                     /locus_tag="U1335_001604"
     CDS             complement(<1..594)
                     /gene="nth"
                     /locus_tag="U1335_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000244460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEM5232066.1"
                     /translation="MVLSKKRARKVIEEIIALYPDAKPSLDFRNHFELVCAVLLSAQT
                     TDAAVNKATPGLFAAFPTPQAMAAAEVKDIEPYISRLGLYRNKAKFLKDCAQQLMERH
                     NGIVPQTREELEALAGVGRKTANVVLSVGFGIPAFAVDTHVGRICKHHDIVKKSATPL
                     ETEKRVMEVLPPELWLPAHQAMIYFGREVCHPKNPECE"
     gene            692..1543
                     /locus_tag="U1335_001605"
     CDS             692..1543
                     /locus_tag="U1335_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HEM5232067.1"
                     /translation="MDLQELCRKVIQARPCNSHKGSYGRVLLIGGLYPYGGAIIMAAL
                     ATVNSGAGLVTVATEKDNISALHSHLPEAMAFSFDDQALLISSLENADLVLIGPGFGE
                     NSRAEQLLDFVFEHLSDQQILVLDGSALTLVAKQNRKNFPCKQVILTPHQKEWERLSA
                     IPIADQTSQRNLEALQSFQENTILVAKSSATQILKTQPNQVTPIGAGGPYQATGGMGD
                     TLAGMIAGFAVQFPHVQLYERILVATYLHSYIADQLAQDYYLVKPTDVSRNIQKTMLQ
                     FQTQTTA"
     gene            complement(1775..6532)
                     /locus_tag="U1335_001606"
     CDS             complement(1775..6532)
                     /locus_tag="U1335_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEM5232068.1"
                     /translation="MKKKETFSLRKYKIGTVSVLLGAVFLFAGAPSVAADELTSLVET
                     KVEATVPDVIVSESASESPVVEELVDTSVEATQTDVTTTDNVEETHSSEALKNTTNTE
                     VEATQPAVETPAISEKKVEEEEKLSVADETTAITNQEEAKPQNIDSNTIITVPKVWDS
                     GYKGEGTVVAIIDSGLDVDHDVLHISDLSTAKYKSEKEIEAAKEAAGITYGEWFNDKV
                     VFGYNYVDVNTVLKEEDKRSHGMHVTSIATGNPTQPVAGQLMYGVAPEAQVMFMRVFS
                     DLKATTGAALYVKAIEDAVKLGADSINLSLGGANGSVVNMNENVTAAIEAARRAGVSV
                     VIAAGNDGTFGSGHSNPSADYPDYGLVGAPSTARDAISVASYNNTTVGSKVINIIGLE
                     NNADLNYGKSSFDNPEKSPVPFEIGKEYEYVYAGIGQASDFDGLDLTGKLALIKRGTI
                     TFSEKIANATAAGAVGVVIFNSRPGEANVSMQLDDTAIAIPSVFIPLEFGEALAANSY
                     KIAFNNETDIRPNPEAGLLSDFSSWGLSADGELKPDLAAPGGAIYAAINDNDYANMQG
                     TSMASPHVAGAAVLVKQYLQATYPTKSPQEIEALVKHLLMSTAKAHVNKETTAYTSPR
                     QQGAGIIDTAAAISTGLYLTGEDGYGSITLGNVEDTFSFTVTLHNITNEDKTLNYSTQ
                     LTTDTVQNGLITLAPRLLADISGGKVTVKANSSTTVTINVDASSFAEELTGLMKNGYY
                     LEGFVRFTDIADGGDIVSIPYVGFRGEFQNLAVLEEPIYNLIADGKGGFYFEPVTAQP
                     DTVDISHHYTGLVTGSTELIYSTDKRSDFAIKTLGTFKNEAGYFVLELDESGKPHLAI
                     SPNGDDNQDSLAFKGVFLRNYTDLVASVYAADDTERTNPLWESQPQSGNKNFYSGDPK
                     NPKSSIIYPTEWNGTDSEGNALADGKYQYVLTYSSEVPGAAVQTMIFDVIIDRESPVI
                     TTATYDETNFTFNPRPAIEKGESGLYREQVFYLVADASGVTTIPSLLENGDVTVSDNK
                     VFVAQNDDGSFTLPLDLADISKFYYTVEDYAGNISYEKVENLISIGNEKGLVTVNILD
                     KDTNSPAPILFTYSVTDETGKIVAELPRYAGDTSVLKLPFGTYTFDLFLYDTEWSSLA
                     GETKAVVTISEENSTAEVNFYVTLKDKANLLVDIDALLPSGSNIQLVTADGQTIQLPN
                     AKYSKTDYGKFVPVGTYTILPTLPEGYEFLEELDVAVLANQSNVKKLTLINKVALKEL
                     IAELAGLEETARYYNASPELQTAYVKALEDANAVYANKHNQAQVDSAVASLVAAREQL
                     NGQATDTEKLIAEVSNYTPTQANFIYYNAENTKQIAYDTAVRSAQLVLNQENVTQAVV
                     NQALADLLAAKANLDGQKTDISALRSAVSVSSVLKATDAKYLNASENVKQAYDQAVEA
                     AKAILADESASQASVDQALAVLTSAQAELDGVATSTNDAKEPVNTATDKKDEGTVTPP
                     PINSEKVDVQAPPVKDTGNSGYVPIGQKPNPQPTLPRPVTLQASLSSPNQEKQVTQLP
                     NTGDNDTRYYLVLGVIIGLGTLLVSKRRHKEEV"
BASE COUNT         1908 a         1443 c         1353 g         2089 t
ORIGIN      
        1 ttcgcattca gggttcttag gatggcaaac ctcacgacca aaataaatca tagcttgatg
       61 agcagggagc cagagttcag gaggtaagac ttccatgact cgtttttctg tttccagggg
      121 tgtagccgat tttttgacaa tatcgtggtg tttacaaatc cgtcccacgt gggtatcaac
      181 tgcgaaggca ggaattccga aaccgacact taaaacaaca ttggccgttt ttcttcccac
      241 tcctgccaag gcttctaatt cctcacgagt ttgaggaaca ataccattat gccgttccat
      301 caactgctgg gcacagtctt ttaaaaactt tgccttgttt cgatacaaac ccaaacgaga
      361 aatataaggc tcaatatcct tcacttctgc tgccgccatg gcttggggcg tagggaaagc
      421 tgcgaacaaa ccaggtgttg ccttattcac cgcagcatct gtagtttgag cagataagag
      481 cactgcacat accaactcaa agtgatttcg aaagtccaag ctaggcttag catcaggata
      541 tagagcgatg atttcttcaa taacttttct tgcacgtttt tttgataata ccatgaattc
      601 attatagcat gaaaacttgg atttatctaa aatctggatt gtcataaacc tcattcctcg
      661 tggtataata aaaagaaaag ggggaatatg tatggactta caagaactct gtagaaaggt
      721 cattcaagca agaccatgca acagccataa gggaagctat ggtcgagtct tgctgattgg
      781 tggactgtat ccctatggtg gagcgattat catggccgca ctagcaaccg tcaacagtgg
      841 agcaggcttg gtaactgttg ctactgaaaa agataacata tcagccttac atagtcatct
      901 gcctgaagcc atggcatttt catttgacga tcaagcctta ctgataagta gtttagaaaa
      961 tgctgacttg gtattgattg gtccaggttt tggggaaaat agcagagctg aacagttatt
     1021 ggactttgtt tttgaacatt tatctgacca gcagatttta gttcttgacg gatcagccct
     1081 taccttagtc gcaaaacaaa acagaaagaa cttcccgtgt aagcaagtca tcctgacacc
     1141 ccaccagaaa gaatgggaac ggttatcagc cattccgatt gctgaccaaa caagccaaag
     1201 aaatcttgaa gccttgcaat cttttcaaga aaatacaatc cttgtagcta aaagttctgc
     1261 tactcaaatc ctaaaaaccc agccaaacca agtcactcca ataggagctg gtggtcccta
     1321 ccaagcaaca ggaggtatgg gagatactct tgcaggtatg attgcaggat ttgctgtaca
     1381 atttccccat gttcaactat atgaaagaat ccttgtagca acctacctcc actcctatat
     1441 tgccgaccaa ctggctcaag attattatct tgtaaagcca actgatgtct caagaaacat
     1501 ccaaaagaca atgcttcaat ttcaaacaca aacaaccgct taatcaatga ttaagcggtc
     1561 tttatataac aaactcgtga ttaaagcctg ataaatggta gaaaatgata ctcaatgcaa
     1621 atcaaaagtt gcctaggaaa cgaagccgaa gatagaactc tgttactatc ttatttcaag
     1681 gtaacaggct gaaaacctcc actggagctt ttcactcatc aaggcaagtt gacaacggat
     1741 aattttgatt ttcgaagagt atgactatat tttcttagac ttcttcttta tgacgtcgtt
     1801 tgcttaccaa cagagtccct agcccaataa tgacaccaag aacaagatag tatctcgtat
     1861 cattgtctcc agtatttggt agttgagtca cctgtttttc ttgattaggg ctagatagac
     1921 tagcttgcaa agtgactgga cgaggtaaag ttggttgagg gtttggcttc tgccctatcg
     1981 gtacatatcc tgaattccca gtatctttta caggaggtgc ctgtacatca actttttctg
     2041 agtttatagg tggaggcgtt acagtgcctt catctttttt gtcagtggca gtatttactg
     2101 gctctttggc atcatttgtt gaagtagcaa caccatccag ttctgcctga gcgcttgtca
     2161 gaacggctag agcttgatcg acacttgctt ggcttgcaga ttcgtcagct agaatcgctt
     2221 tcgctgcttc aactgcttgg tcataagctt gtttcacgtt ttcagatgca ttgagatact
     2281 tagcatctgt cgcttttaat acggaagaaa cggatactgc gctacgaagg gctgaaatat
     2341 cagtcttttg accatctaag ttggctttag ccgctaacaa gtccgccaac gcttggttga
     2401 caactgcctg tgttacattc tcttggttca atacaagttg tgctgaacga acagctgtat
     2461 cataggcaat ttgtttggta ttttcagcat tataataaat aaagtttgcc tgagtcggtg
     2521 tgtagtttga tacttcagca attagttttt ccgtatcggt agcctgaccg tttagctgct
     2581 ctctcgccgc cacaagactg gcaactgctg aatctacttg tgcctgattg tgtttgttgg
     2641 catatactgc attggcatct tctaatgctt taacataggc agtttgaagt tctggactag
     2701 cattgtaata acgcgctgtt tcttcaagtc cagcaagttc agcaatcagt tctttcaagg
     2761 caactttatt aatcaaggtt aatttcttaa catttgactg gtttgcaagt actgctacgt
     2821 ctaattcttc caaaaattca tagccttctg ggagggttgg aaggatagtg taggtaccaa
     2881 ctggtacaaa tttaccataa tcggtcttag aatatttagc atttggtagc tgaatagtct
     2941 ggccatcagc agttaccagt tggatgtttg aaccagaagg tagtaatgca tcaatatcta
     3001 ccagcaagtt ggccttatct ttcaaagtca catagaaatt cacctcggca gtgctatttt
     3061 cttccgaaat cgtcacgact gcttttgttt cacctgctag gcttgaccat tctgtatcat
     3121 ataagaataa atcaaaggtg taagtaccaa atggtagctt aagaacgcta gtatcgccgg
     3181 catatcgtgg taattctgca acaatcttgc ctgtttcatc ggtgactgag taagtgaaaa
     3241 gtattggtgc aggactattt gtatctttat caagaatatt gacagttacc aacccttttt
     3301 cattgccgat actgatcaga ttctctactt tttcatagct gatgttacca gcataatcct
     3361 ctactgtgta gtagaatttt gaaatatctg caaggtcaag aggcaatgta aaggagccat
     3421 cgtcgttttg tgccacaaat accttgttat cagaaacggt tacatctcca ttttctaata
     3481 aggaaggaat agttgtcaca ccgcttgcat ctgctacaag gtagaatact tgctcgcgat
     3541 atagaccgga ttctcctttt tcaatggctg gacgagggtt aaatgtaaag tttgtttcat
     3601 cataggtagc tgtggtgata actggtgatt ctctatcgat gataacatcg aaaatcatag
     3661 tttgtactgc tgcacctgga acttcagatg agtaggtcaa aacgtattga tacttaccat
     3721 ctgctaaagc atttccctcg ctgtctgtcc cattccattc agtagggtaa ataatgcttg
     3781 attttggatt tttaggatca ccactataga agttcttatt gcctgactgt ggttgacttt
     3841 cccaaagtgg atttgttcgt tcggtatcat ctgcagcata gacgcttgcg actaaatccg
     3901 tataatttct caagaagaca cctttgaaag cgagcgaatc ttggttgtca tccccatttg
     3961 gcgagatagc taaatgaggc ttaccagact catcaagctc taaaacaaag tatcctgctt
     4021 catttttaaa tgtaccaaga gtcttgatcg caaagtcaga tcgtttgtct gtagaataga
     4081 ttaactccgt acttcctgta acaagacctg tgtagtgatg gctgatgtca acagtatctg
     4141 gttgtgctgt aacaggttca aagtagaagc cccccttacc atcggcaata agattgtaaa
     4201 tcggctcttc tagaacggct agattttgga attccccacg gaaaccaacg tatggaatgc
     4261 tgacaatatc accgccatcg gctatatctg taaatcgaac aaaaccttca agatagtaac
     4321 cgtttttcat taaacctgtc aattcttctg caaagcttga tgcatcgaca ttaattgtaa
     4381 cagttgtact tgaattggct ttcacagtca ccttaccgcc agaaatatct gctaatagac
     4441 gcggagccaa ggtgattaat ccattttgga cagtatccgt tgttaattgc gttgagtagt
     4501 ttaaagtctt atcttcgttt gtaatgttat gaagtgtgac cgtaaagctg aatgtatcct
     4561 caacatttcc caaggtaatg ctgccataac cgtcttcgcc agtcaaatat aaacctgtag
     4621 aaatagctgc cgcagtatcg atgatacctg caccttgttg gcgaggggaa gtgtaggctg
     4681 ttgtttcttt gttcacatgt gctttagcag tagacataag caagtgtttt actaaggctt
     4741 cgatttcttg aggggactta gtagggtaag ttgcctgtaa atactgtttt actagtacgg
     4801 ctgctcctgc cacgtgtggt gaagccatac ttgttccctg catgttggca tagtcattat
     4861 cattgatggc tgcataaata gcaccacctg gagcagctaa gtctggtttt agctcgccat
     4921 ccgccgacag accccaactt gaaaaatctg aaagaagacc tgcttctggg ttagggcgaa
     4981 tatctgtttc gttattgaac gcaatcttat atgagttagc tgccaaagct tcaccaaatt
     5041 ccaatggaat gaagacagat ggaattgcaa tagctgtatc atcaagttgc atgcttacgt
     5101 tggcttcacc tggacggcta ttgaaaatga ccacccctac tgcacctgca gctgttgcat
     5161 tggctatttt ttctgagaag gtaatcgttc cacgtttgat gagtgcaagt tttccagtca
     5221 aatctagacc atcaaaatcc gaagcttgac cgattcccgc ataaacatat tcatattctt
     5281 ttccgatttc aaatggtacg ggacttttct ctggattatc aaacgaactc ttaccgtaat
     5341 tcaagtcagc attgttttct aagccaatga tattgattac tttactacca accgttgtgt
     5401 tattgtaaga agcgacagaa attgcatcgc gagctgttga aggtgcaccg accaagccat
     5461 aatctggata atcggctgac ggattagaat gacctgaacc aaatgttcca tcattaccag
     5521 ctgcaataac aacagaaacc cctgcacgac gagcagcctc gattgctgca gtcacatttt
     5581 cattcatgtt aacaacagag ccgttagctc ctcccaggct gaggttgatg ctatctgcac
     5641 ctaattttac agcatcttca atcgccttta cgtacaatgc tgcacctgtt gtagctttga
     5701 ggtctgagaa tacacgcatg aacatgactt gcgcttcagg agctacacca tacattaatt
     5761 gtccagcgac tggttgtgtc ggatttcctg tggcaatact cgttacgtgc ataccgtgtg
     5821 agcgtttgtc ttcttctttc aagacagtat tcacatcaac atagttataa ccaaatacaa
     5881 ccttatcgtt aaaccattca ccgtaggtaa ttcctgctgc ttctttagct gcttctatct
     5941 ctttttctga tttatatttt gcagttgaga gatctgaaat atgcaataca tcgtggtcaa
     6001 cgtcaagacc ggaatctatg attgcaacta ctgttccttc gcccttgtaa ccactatccc
     6061 aaactttagg tactgtaatg attgtattgc tatcaatgtt ttgtggtttc gcttcttcct
     6121 gattagtaat agcagtagtc tcatctgcta cggaaagctt ctcctcttct tctacttttt
     6181 tctctgaaat agctggagtt tctacagctg gttgagtcgc ttctacttct gtatttgtag
     6241 tgtttttaag agcttctgag ctatgtgttt cctctacatt atctgtagtg gttacatcag
     6301 tttgggtagc ctccacagaa gtgtcaacta actcctcgac aacgggactt tctgaggctg
     6361 attcgctgac gattacgtca ggaacagttg cttccacctt agtctctaca aggcttgtca
     6421 attcatctgc agctacagat ggtgcacctg caaacaaaaa aactgcaccc aaaagaacag
     6481 acacagttcc aattttatac ttccgaagtg agaaagtttc tttctttttc ataacttttc
     6541 ctcctagttt ttctccttca ttattggcaa aaccaataaa tatattaaaa cacaaaatta
     6601 tcagtattgc aagtatattc tgaaaattca gttatttatt caaactataa ctagctatca
     6661 ataatatcta taaccataga tacagataat gcacactata gtcaaatgaa ttagctttca
     6721 gacaaggaac tgagggcagg cagtactaga gtacggcaat ccgaaagtga cgatgtatca
     6781 aagttaattc aaa
//
LOCUS       DASGAC010000113         6724 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.113, whole genome shotgun sequence.
ACCESSION   DASGAC010000113 DASGAC010000000
VERSION     DASGAC010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6724
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.113"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..362
                     /locus_tag="U1335_001607"
     CDS             <1..362
                     /locus_tag="U1335_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232069.1"
                     /translation="QAINLELTLDEKSYQLDNLFFISVANSLYFGGGIMIWPTASAKK
                     KEVDIVYFKNGNFYQRLQSLLALLTKRHESSHTIQHLTGVDVVLKSKEKLLLQIDGET
                     CTANEVTLTYQERSMYL"
     gene            372..575
                     /locus_tag="U1335_001608"
     CDS             372..575
                     /locus_tag="U1335_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF951 domain-containing protein"
                     /protein_id="HEM5232070.1"
                     /translation="MYQLGSFVEMKKPHACVIKSTGKKANKWEVIRLGADIKIRCTNC
                     DHVVMMSRHDFERKMKQVLPSEA"
     gene            679..1038
                     /locus_tag="U1335_001609"
     CDS             679..1038
                     /locus_tag="U1335_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5232071.1"
                     /translation="MKQLAQQIKNLRTTKNLSQDELAEKLYISRQAVSKWENGEATPD
                     IDKLVQLAEIFGVSLDYLVLGKEPEKEIVVEQRGKMNVWEYLNEESKRQLTRGDFIFL
                     ILCFIVYLCVMFIQHYF"
     gene            1123..2238
                     /gene="ychF"
                     /locus_tag="U1335_001610"
     CDS             1123..2238
                     /gene="ychF"
                     /locus_tag="U1335_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002269933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEM5232072.1"
                     /translation="MALTAGIVGLPNVGKSTLFNAITKAGAEAANYPFATIDPNVGMV
                     EVPDERLQKLTELITPKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVH
                     VVRAFDDENVMREQGREDAFVDPIADIDTINLELILADLESINKRYARVEKMARTQKD
                     KDSVAEFAVLEKIKPVLEDGKSARTVDFTDEEQKIVKQLFLLTTKPVLYVANVDEDKV
                     ADPESISYVQQIRDFAATENAEVVVISARAEEEISELDDEDKGEFLEALGLTESGVDK
                     LTRAAYHLLGLGTYFTAGEKEVRAWTFKRGMKAPQCAGIIHSDFEKGFIRAVTMSYDD
                     LIQYGSEKAVKEAGRLREEGKEYVVQDGDIMEFRFNV"
     gene            2396..2965
                     /locus_tag="U1335_001611"
     CDS             2396..2965
                     /locus_tag="U1335_001611"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000163933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEM5232073.1"
                     /translation="MTRLIIGLGNPGDRYFETKHNVGFMLLDKIAKRENVTFNHDKIF
                     QADIATTFIDGEKIYLVKPTTFMNESGKAVHALMTYYGLDETDILVAYDDLDMAVGKI
                     RFRQKGSAGGHNGIKSIVKHIGTQEFDRIKIGIGRPKGKMSVVNHVLSGFDIEDRIEI
                     DLALDKLDKAVNVYLEEDDFDTIMRKFNG"
     gene            2965..6459
                     /gene="mfd"
                     /locus_tag="U1335_001612"
     CDS             2965..6459
                     /gene="mfd"
                     /locus_tag="U1335_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEM5232074.1"
                     /translation="MNILDLLHKNKQINQWQSGLNKSTRQLLLGLTGTSKSLVMATAY
                     DSLAEKIMIVTATQNDAEKLVADLTAIIGSENVYNFFTDDSPIAEFVFASKERTQSRI
                     DSLNFLTDSTSSGILVASMAACRVLLPSPETYKGSKIQLEVGQEIEVDKLVKNLVNTG
                     YKKVFRVLTQGEFSQRGDILDVFDMQADAPYRLEFFGDEIDGIRIFDVDSQKSLENLD
                     EISISPASDIILSSEDYSRASQYIQTAIEQSTLEEQQSYLREVLADMQTEYRHPDLRK
                     FLSCIYEQSWTLLDYLPKGSPLFLDDFHKIADKQAQFENESAELLTDDLQKGKSVSSL
                     NYFASTYSELRKYKPASFFSSFQKGLGNVKFDALYQFTQYPMQEFFHQIPMLKDELTR
                     YAKSNNTVVIQASSDVSLQTLQKTLQEYDIHLPVHVADKLVEGQQQVTIGQLASGFHL
                     MDEKLVFITEKEIFNKKIKRKVRRTNISNAERIKDYSELAVGDYVVHHVHGIGQYLGI
                     ETIEISGIHRDYLTVQYQNSDRISIPVEQIDLLSKYLASDGKAPKVNKLNDGRFQRTK
                     QKVQKQVEDIADDLIKLYAERSQLKGFAFSPDDENQIEFDNYFTHVETDDQLRSIDEI
                     KKDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVLAQQHYANFQ
                     ERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFADLGLLVI
                     DEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPTNRYPV
                     QTYVMETNPSVIRDAMLREIDRGGQVYYLYNKVDTIEQKVSELKELVPEATIGYVHGQ
                     MSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENADHMGLSTLYQLRGR
                     VGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQDLSIRGAGNILG
                     AAQSGFIDSVGYELYSQLLEQAILEKQGKASQRQKSNSEVNLLIDAYLPSDYIADQRE
                     KIEIYKRIKNIDSRVNYQELQEELIDRFGEYPDVVAYLLEIGLLKSFLDQVFCHTVLR
                     QQYQVTVTFEPTAGQIFLTQDYFEALSVTNLKAQIRENKGKLAVVFNTQQKKEFEIIE
                     ELISFAEKLQEIKARKAE"
     gene            6509..>6724
                     /locus_tag="U1335_001613"
     CDS             6509..>6724
                     /locus_tag="U1335_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001234967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEM5232075.1"
                     /translation="MRLDKYLKVSRIIKRRTVAKEVADKGRIKVNGILAKSSTDLKVN
                     DQVEIQFGNKLLTVKVLEMKDSTKKEDA"
BASE COUNT         2185 a         1175 c         1435 g         1929 t
ORIGIN      
        1 aacaagctat aaacttagaa ttaactcttg atgaaaaatc ttatcagtta gataatctct
       61 tttttatttc tgtagcaaat agtctttatt ttggtggagg aatcatgata tggccaacag
      121 caagtgctaa aaagaaggaa gtagatattg tttacttcaa gaatggaaat ttctaccaac
      181 gtctacaatc attgttagcc ttattaacga agaggcatga atcttctcat acaattcagc
      241 atttaacagg ggtagatgta gttttaaaat caaaagaaaa attattattg caaatagatg
      301 gagagacatg cactgcaaat gaggtaacgt taacctatca ggaaagaagt atgtatcttt
      361 aaggaggaag tatgtatcaa ttaggatcat ttgtcgaaat gaaaaagcct catgcctgtg
      421 tcatcaaatc gaccggaaag aaggctaata agtgggaggt tatccgtcta ggagcggata
      481 ttaaaatccg ctgtaccaac tgtgaccatg ttgttatgat gagccggcat gattttgaac
      541 gaaaaatgaa acaagttcta ccaagtgaag cctagttgac agtttgcaac tgctggttgc
      601 gattttttcc taaaaattac tagtcaactc ttcctttcta agctataata gacttagaaa
      661 aaagaggagg acaagaccat gaagcagtta gcacagcaaa tcaagaatct acgcacaacc
      721 aagaacctat ctcaagatga gttggcagag aaactctata tttcccgtca ggctgtttcc
      781 aagtgggaaa atggcgaagc cacgccagat attgacaaac tggtccagct ggcagaaatc
      841 tttggtgtta gtctggatta tctggtttta ggaaaagagc ctgagaagga aattgtggtg
      901 gaacaacgag gaaaaatgaa tgtttgggaa tacttgaacg aagaatccaa acgacagctt
      961 acaagaggag attttatctt tctcattctt tgtttcattg tctacttatg tgtaatgttt
     1021 attcagcatt atttttaacg aagcttgcca aacagcaagc tttttctcta tttttctgct
     1081 ataatagtca tgattgaatt tttaattgga gagtaaaaaa acatggcttt aacagcagga
     1141 atcgtcggtt tgccaaacgt tggtaaatca accctattta acgcaattac aaaggcagga
     1201 gcagaggctg caaactaccc tttcgcgact attgatccaa acgtcggcat ggtggaagtg
     1261 cccgatgagc gtttgcagaa attgacagaa ctcatcactc ctaaaaagac agttccaacg
     1321 accttcgaat ttaccgatat tgctggtatc gtaaaaggtg cctctaaagg tgaagggctt
     1381 ggaaataaat tcttggccaa tatccgcgaa gttgatgcca ttgtccatgt ggtgcgtgcc
     1441 tttgacgatg aaaatgtcat gcgtgaacaa ggtcgtgaag acgcttttgt ggatccaatc
     1501 gcagatattg atactattaa cctagaattg attttggcgg acctagagag catcaacaag
     1561 cgttatgcgc gtgtagaaaa aatggcacgt acgcaaaaag acaaggattc tgtagcagaa
     1621 tttgcagtcc ttgaaaaaat caaacctgtc ttggaagacg gaaaatctgc ccgtacggtt
     1681 gacttcacag atgaagaaca aaaaatcgtc aagcaactct tcctcttgac cactaaacca
     1741 gtcctctatg ttgccaacgt cgatgaagat aaggtagcag atcctgagtc tatcagttat
     1801 gttcagcaaa tccgtgactt tgcggcaaca gaaaatgcag aagttgtagt aatttctgcg
     1861 cgtgctgaag aagaaatttc agaacttgac gatgaagaca agggtgagtt tttggaagct
     1921 cttggattaa cagaatctgg cgtggacaaa ttaacacgtg cagcctatca cttgcttgga
     1981 cttggcacct actttacagc aggggagaag gaagttcgtg cttggacctt caagcgtggc
     2041 atgaaagctc ctcagtgtgc aggcattatc cactcagact tcgaaaaagg ttttatccgt
     2101 gccgtcacca tgtcctatga tgatttgatt caatatggct ctgaaaaggc tgttaaagaa
     2161 gcaggacgcc tccgtgaaga aggaaaagag tacgtggttc aagatgggga catcatggag
     2221 ttccgcttta acgtttgatg gctaaactgt ccttattctt cgttgtttta ccttgccata
     2281 ccatcagtat tgtctgcggt ttcaacgcct agactaagaa cagtttatcg catcaaagag
     2341 gatgattact tggttggaaa gctttttcca gccttttggt atttaaggag aaaaaatgac
     2401 acgattgatt ataggcctag gaaatcccgg agaccgctat tttgaaacca agcataatgt
     2461 tggttttatg ttgctggata agattgctaa acgtgaaaat gtgaccttta accacgataa
     2521 gattttccaa gctgacattg ctactacctt tattgacggc gaaaaaatct atctagtaaa
     2581 gccaacgacc ttcatgaacg aatcaggtaa ggctgttcat gccctgatga cctactatgg
     2641 tttggatgaa acagatattc tggtggctta cgatgatttg gacatggcag ttgggaaaat
     2701 ccgtttccgt caaaaaggct cagcaggtgg ccacaatggg attaaatcta ttgtcaagca
     2761 tattggaaca caggaatttg accgtatcaa gattggtatt gggcgtccta aaggaaaaat
     2821 gagcgttgta aaccatgtct tgtctggctt tgatatagag gaccgtattg aaattgactt
     2881 agcactagat aaacttgaca aggctgtcaa cgtatatctc gaagaagatg attttgatac
     2941 tattatgaga aagtttaatg gataatgaat atactagatc ttcttcacaa aaataagcaa
     3001 atcaatcagt ggcagtctgg cttaaacaag tcaactcgcc aactattatt aggactcact
     3061 ggaaccagta agtcattagt catggcaact gcctatgata gtttggctga gaaaataatg
     3121 attgtgactg ctactcaaaa tgatgctgag aaattagttg cagatttaac agccattatt
     3181 ggaagtgaga atgtttacaa cttttttaca gatgatagtc ctattgcaga gtttgttttc
     3241 gcttctaagg aacggacgca gtcaaggatt gacagtttaa atttcttgac agattctact
     3301 agttcaggaa ttttggttgc tagtatggct gcttgtcggg tcttattgcc gagtcctgag
     3361 acttataaag gttctaaaat acagcttgaa gttggtcaag aaatagaagt tgacaaactt
     3421 gtaaagaatc ttgtcaatac aggctacaaa aaggtattca gagttttaac tcagggagaa
     3481 tttagccaac gaggtgacat cctagatgtt tttgatatgc aagctgatgc cccttatcgt
     3541 ttggaatttt ttggagatga gattgatggc attcgtatct ttgatgttga cagtcaaaaa
     3601 tccttagaaa atctagacga aatctcgatc tctccagctt ccgatatcat tttgtcttca
     3661 gaagactata gtagggctag ccaatacatt cagacagcta ttgaacaatc gaccctagag
     3721 gagcaacagt cttacttacg agaagtctta gctgatatgc agacggagta ccggcatcca
     3781 gatttgcgta aattcttgtc ctgtatctat gaacaatcat ggacgttgtt ggattatttg
     3841 ccaaaaggtt cccccctatt tttagatgat ttccataaaa ttgctgacaa gcaggctcaa
     3901 tttgaaaacg aatcagcaga gttattgaca gatgatttac agaagggtaa atcagtgtca
     3961 agtttaaact attttgcatc tacctattcg gaattaagaa aatacaaacc tgccagcttc
     4021 ttttcaagtt ttcaaaaagg tttaggcaat gtaaagtttg atgctcttta tcaattcaca
     4081 cagtatccta tgcaggaatt tttccaccag attccaatgt taaaagatga attgactcga
     4141 tatgcgaaat caaacaatac cgttgttatt caagcgagtt ctgatgtgag tttacagact
     4201 ttacagaaaa ctttacaaga gtatgatatc catcttccag tacatgtagc agataagtta
     4261 gtagaaggtc agcaacaggt tacgattggt cagttagctt caggttttca tttgatggat
     4321 gagaaactag ttttcatcac tgaaaaagag atttttaata aaaagattaa gcgtaaggtc
     4381 cgtagaacta atatttctaa tgctgagcgt attaaggact atagtgagct agctgttggt
     4441 gactatgttg ttcaccatgt tcatgggata ggtcagtatt tagggataga aaccattgaa
     4501 atatcaggta tccaccgtga ttatttaacg gttcaatatc aaaactccga tcgcatttcc
     4561 attcctgtag agcagattga tctcctttcc aaatacttag cgtccgatgg aaaagctcca
     4621 aaagttaata aactaaacga tggccgtttc caacgaacca agcaaaaagt tcagaagcag
     4681 gtagaggata ttgcggatga tttgattaag ctttatgcag agcgtagcca gttgaaaggc
     4741 tttgcctttt caccagatga tgagaatcag attgagtttg acaactactt tacacatgtg
     4801 gaaacagacg accaactccg ttccatcgat gaaatcaaaa aagacatgga aaaagattct
     4861 ccaatggatc gtcttttggt tggggatgtt ggttttggta agaccgaagt agccatgcgg
     4921 gctgccttta aagcagtcaa tgatggcaag caagtagcta ttcttgttcc aacgactgtt
     4981 ttagcccaac aacactatgc taatttccaa gaacgatttg cggaatttcc tgtcaatgtg
     5041 gatgttatga gtcgttttaa aaccaaggca gagcaggaaa aaacacttga gaaattgaaa
     5101 aaaggtcaag ttgatatctt gattggtacc catcgccttc tatcaaaaga tgttgttttt
     5161 gctgatttag gtttactggt tattgacgaa gagcaacggt ttggtgtcaa gcataaggaa
     5221 cgcttgaagg aattgaaaaa gaaaatagat gtcctaaccc taactgcaac tccaattcct
     5281 cggacattgc aaatgtctat gttgggaatc cgtgacttat ccgtaatcga gactccaccg
     5341 acaaatcgct atccagtcca aacttatgtc atggaaacaa atccttccgt tatccgagat
     5401 gcaatgcttc gtgagataga tcgcggagga caggtttact atctttacaa taaagttgac
     5461 accattgaac agaaagtgtc tgaattaaaa gaattggttc cagaagctac tataggatac
     5521 gtccatggac aaatgtcgga aattcagctg gaaaataccc tttatgcctt tgtagaaggt
     5581 gagtatgata ttctggtgac cacaacaatc attgaaacag gtgttgatat tccaaatgct
     5641 aatacactgt ttattgaaaa tgcagatcat atgggactgt caactcttta tcaacttaga
     5701 ggacgtgttg gccgttccag tcggattgcc tatgcctatc tcatgtaccg tccagacaag
     5761 tccttgacag aagtagctga aaaacgcttg gaagccatta agggctttac agaactagga
     5821 tcaggtttca agattgctat gcaagatttg tctatccgtg gagctggaaa tattttaggt
     5881 gctgcccagt caggatttat tgattctgta gggtatgaac tgtattcaca attgctagaa
     5941 caagccattt tagaaaaaca aggcaaggcg tctcagcgtc agaaaagtaa ttctgaggtt
     6001 aatttactga ttgatgccta cctgccaagt gactatattg cagaccagcg agaaaaaatt
     6061 gaaatttaca agcgtatcaa gaatattgac agtcgtgtca actatcaaga attgcaagaa
     6121 gaattgatag accgttttgg agagtatcca gatgtagtag cttacttact tgaaattggt
     6181 ctattgaaat catttttaga ccaagttttc tgtcatacag ttcttagaca acaatatcaa
     6241 gtgacagtga cattcgaacc tacggctggt caaattttcc taacacaaga ttattttgaa
     6301 gcattatctg tgacgaattt gaaagctcag ataagggaaa ataaaggaaa actagcggtt
     6361 gtatttaaca ctcaacagaa aaaagaattt gaaattattg aagaattgat ttcttttgcg
     6421 gagaagttac aagaaatcaa ggcaagaaag gcagaataaa tttctcaaat accttgaaaa
     6481 atggtaaaat aatgaactga ggtaaagtat gagactagat aaatatttga aagtatcccg
     6541 cattatcaag cgtcgaacag ttgcgaagga agttgccgat aaaggacgaa taaaagtcaa
     6601 tgggattttg gcgaaatctt caacagattt aaaagtaaat gatcaggttg aaatccaatt
     6661 tggtaataaa ctactcactg taaaagtact tgaaatgaaa gattcgacta aaaaagaaga
     6721 cgca
//
LOCUS       DASGAC010000114         6689 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.114, whole genome shotgun sequence.
ACCESSION   DASGAC010000114 DASGAC010000000
VERSION     DASGAC010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6689)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6689)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6689
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.114"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(14..1618)
                     /locus_tag="U1335_001614"
     CDS             complement(14..1618)
                     /locus_tag="U1335_001614"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000170456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEM5232076.1"
                     /translation="MTKYIFVTGGVVSSIGKGIVAASLGRLLKNRGLKVTIQKFDPYI
                     NIDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLRKE
                     RKGEYLGATVQVIPHITDALKDKIKRAARTTDADVIITEVGGTVGDIESLPFLEALRQ
                     MKADVGSDNVMYIHTTLLPYLKAAGEMKTKPTQHSVKELRGLGIQPNMLVIRTEQPAG
                     QGIKNKLAQFCDVAPEAVIESLDVEHLYQIPLNMQVQNMDQIVCDHLKLDVPPADMTE
                     WTAMVNKVLNLQKKVKIALVGKYVELQDAYISVVEALKHSGYANDAAIELDWVNANDL
                     TAENVAARLGQAQGIIVPGGFGQRGTEGKIQAIRYARENDVPMLGVCLGMQLTCVEFA
                     RHVLGLEGANSFELDSETKYPIIDIMRDQIGVEDLGGTLRLGLYPSKLKRGSKAAAAY
                     DNQEVVQRRHRHRYEFNNDFREQFEKAGFVFSGVSPDNRLVEIVEIPENKFFVACQYH
                     PELQSRPNRPEGLYTAFVSAAMENEK"
     gene            complement(1811..2392)
                     /locus_tag="U1335_001615"
     CDS             complement(1811..2392)
                     /locus_tag="U1335_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit delta"
                     /protein_id="HEM5232077.1"
                     /translation="MELNVFAGQEKSELSMIEVARAILEERGRDNEMYFNDLVNEIQN
                     YLEKSNSEIRAALPTFYSDLNVDGSFIPLGENKWGLRSWYAIDEIDEEVITLEEDDED
                     APKRKKKRVNAFMDGDDDAIDYGHDDPEDEDNYPGSASSEYDDENPDDEKDEVESYDS
                     EINEIIPDDELDEEDVDLGEDDDEYSDEEVVDE"
     gene            complement(2519..5674)
                     /locus_tag="U1335_001616"
     CDS             complement(2519..5674)
                     /locus_tag="U1335_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pneumococcal-type histidine triad protein"
                     /protein_id="HEM5232078.1"
                     /translation="MKKKAVVGSVAALVLGMSLCSYQLGRFQAMEEQKNRVSYIEDSQ
                     SVQTTVAEQLTPDQVSAKENIDAEQIVVKITDQGYVTSHGDHFHYYNGKVPFDAIFSE
                     ELVMKDPNYVLQDSHIINEVQDGYVIKVDGKYYLYLKDPSKHKNVRSKEEVERQKGIS
                     SADSKNQAAGNSKDGRYRTDDGYVFNPTDVIEDTGDGFIVPHGDHFHFIPKKDLSAAE
                     LKAAQDYWNQKGSVSSASGSQYGDRNNRAQQPTISAGQGQDLASLLAQLDATPLSQRH
                     VEADGLVFDPRTITKKTAAGVIVPHGDHYHFIPYSQMSPLEEKISRMIGVNGAGVSSG
                     AQASHSQHTPTQPNRPVTPIDTVTTQPVSPTQPVLPTQPKQSTGKVVSYMGRQIPAYG
                     KGLDGKAYFTSDGYTFSKDSITSVDDQGLIASHGDHFHYVGFGELEDFEIKQVEEWVN
                     EKAGKQVPPKTSEQVGNDAKPTTPSQGNDSKPVKPIQEENRPAFEYKQVTAKRKLAGK
                     VVYGMEVGGKTYTYSRDELDLMKISFAELTLAEKDKQYIFDIAPLAEGDLKPAMLVGM
                     DQIPMKGANATYDTGQSFIIPHIDHIHVLPYTWLSREQIATIRYIMQHPEIRPSAWTT
                     SGHGDGEATDLVPPILNATPKANRLGLKNWQIIHTAEEVMDARAKGKFATNDGYIFSA
                     EDVLDPASFVFSQAFSLPRATGGSLRSISKKDLSKEELEAVQTLLDKRDAEELAKNVT
                     PIEKRAGLKNWQIVHSAEELAEAKVAGKYTTKDGYIFDPADLLDPKVKIGTDNYRIPR
                     VITDGYRRINKSDLNYLSELIPAEAMVAQREKSNSSSPSTPAPTETGASAGETTTPEQ
                     PQVAKETAEEIYNRVEAKKVVPFEALTYNAGYATEVRNGTLVIPHQDHYHYVSFKWFD
                     QGSARSPEGYSLEDFLATVKYYMTNPQERPISDDGWGVFTPNTPSESTEETETEESDE
                     EIISEETEEIDEFTEELKRRAEEFGMDFKTFEQSLVTLSDRYKVSFEAFEYDATSKVV
                     RLVDKDGVKRTISLPSLEEQV"
     gene            complement(5696..6616)
                     /locus_tag="U1335_001617"
     CDS             complement(5696..6616)
                     /locus_tag="U1335_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000744528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEM5232079.1"
                     /translation="MLKKILGACLSVLAGLCLMACSAQKEASQVQPGMKIVTSFYPIY
                     SLVKEVSGNKNDVRMIGSRQGIHSYEPSAADIKAIYDADVFIYHSRILESWAGRLEPN
                     LQGSSVKVLEASTNLPLTKVPGLEDMEAGQGIDEASLYDPHTWLDPVLVGQEAVAIGE
                     LLAESDPKNADYYRQNAATLEEKAQKLADKYSPIFLKATSKTFVTQHTAFSYTAQRFG
                     LKQLGIAGVSEEEPSPRQLAEIKEFVDTYKVQTIFTEKGTSDKLAKALATSTGVDLKV
                     LDPLEADPENNLTYLENLEQVLETLAQELK"
BASE COUNT         1702 a         1508 c         1273 g         2206 t
ORIGIN      
        1 ataacagtta gacttatttt tcattctcca tagctgctga aacaaaggct gtatacaaac
       61 cttcagggcg attaggacga gattgtagtt ctggatgata ttggcaggca acgaagaatt
      121 tattttctgg aatttcaaca atttctacca aacggttgtc tggtgacaca cctgagaaaa
      181 caaaacctgc tttttcaaat tgttcacgga agtcattgtt aaactcataa cgatgacgat
      241 ggcgacgttg tacaacttct tgattatcat aagcagctgc agccttggag ccacgtttga
      301 gcttgcttgg ataaagacct aaacggagag ttcctcctaa atcttccact ccaatttgat
      361 cacgcatgat gtcaataatt ggatattttg tttccgagtc taattcaaag ctgttagcac
      421 cttctaaacc gagaacgtga cgagcaaatt ctacacaggt cagctgcatt cccaagcaga
      481 cccctagcat tggcacgtca ttctcacgag cataacgaat ggcttgtatt ttcccttctg
      541 taccacgttg tccaaagcca ccaggaacga taattccttg tgcttgtcct agacgtgcag
      601 ctacgttttc tgctgtcaaa tcatttgcat tgacccagtc caattcgata gcagcatcat
      661 ttgcatatcc tgagtgtttt agagcttcaa ctacagaaat ataggcatct tgtaattcta
      721 catacttacc aactaaagcg atttttactt ttttctggag attaagaacc ttgtttacca
      781 tcgctgtcca ctctgtcata tctgctggag gtacgtcgag cttcaagtga tcgcaaacaa
      841 tttgatccat gttctgcact tgcatattta atgggatttg gtaaagatgt tcgacatcca
      901 aggactcaat aactgcttct ggagcgacat cacagaattg tgccagttta tttttaattc
      961 cttgtccagc aggttgctct gtccgaatta ccaacatgtt aggctgaata cctagaccac
     1021 gcaactcttt tacagaatgt tgtgttggct tagttttcat ttcgcctgct gctttgagat
     1081 aaggcaagag tgttgtatgg atatacataa cattgtctga accgacatct gccttcatct
     1141 gacgaagcgc ttcaaggaat ggcaagcttt caatatcacc tactgtacca cctacttccg
     1201 tgatgatgac atctgcatct gtagtacgag ctgcacgctt gattttgtct ttcaaagcat
     1261 ctgtaatgtg tggaataact tgaactgttg cccctaagta ttccccttta cgctctttac
     1321 ggaggacttc gctataaatt ttacctgttg ttacatttga atatttgttc aggttaatat
     1381 ctatgaagcg ctcatagtgt ccaaggtcca agtcggtttc tgcgccgtcg tccgtcacaa
     1441 aaacttcacc gtgttgatac ggactcattg ttcccgggtc aatgttgatg tatggatcaa
     1501 atttttggat tgttaccttg agacctcgat tcttcaataa acgacctaga ctggctgcta
     1561 caatcccttt gccgatagag gaaacaacac cacctgttac aaaaatatac tttgtcatgc
     1621 aaactccttt tctacgattc aggctaatag gaagcaattt gtggggatac tccctgttaa
     1681 cttgaagaaa aaacaaaaat agctccctat cgctagggag ctccgacctc aaaagaggtg
     1741 cccgatagta tcttatcgta atttggtagt cttgtcaaat tatttttaag aatctagggg
     1801 gatataattc ttattcgtcg acgacctctt catctgaata ctcgtcatca tcttcaccta
     1861 aatcaacatc ctcttcgtcc aattcgtcat ctgggataat ttcattgatt tctgaatcat
     1921 aggactcaac ttcatctttt tcgtcatctg gattttcatc atcgtattct gatgatgcac
     1981 tacccggata gttgtcctca tcttccggat cgtcatgtcc atagtcaatc gcatcatcat
     2041 caccgtccat gaaggcattg acacgtttct tcttgcgttt tggtgcatct tcatcatctt
     2101 cttcaagagt gatcacttct tcgtcaatct catcaattgc gtaccaagaa cgtaagcccc
     2161 atttgttttc gccaagtgga atgaagcttc catccacatt caaatcagaa tagaaggttg
     2221 ggagggctgc gcgaatctcg ctgtttgatt tttcaaggta gttttgaatt tcattgacca
     2281 agtcgttgaa atacatttcg ttgtcacgtc cacgttcttc caaaatagca cgggctactt
     2341 caatcatgga aagttcgctt ttttcttgtc ctgcaaatac gttaagttcc aaggctgttc
     2401 tccttttttg tctttccttt ctattttacg ctaaaaaagg caaatagtca aagataatct
     2461 ttatcgtttt tctgtaaaaa aatacctgca gagctcagcg ctacaggtat tttgtttact
     2521 atacttgttc ttctaaactt ggaagggaga tggtccgttt gaccccatcc ttatctacaa
     2581 gtcgaacaac tttgcttgtt gcatcatatt cgaaagcttc aaaagaaact ttgtaacggt
     2641 ctgagagtgt gaccagactt tgttcaaagg ttttgaagtc catgccgaac tcttctgctc
     2701 ttcgttttaa ttcttctgta aactcgtcaa tttcctcggt ttcttcagaa ataatttctt
     2761 catcactttc ttccgtctct gtttcttctg ttgattcaga tggtgtattt ggtgtaaata
     2821 ctccccagcc atcgtctgaa atcgggcgtt cttgtggatt agtcatgtag tacttaaccg
     2881 ttgctaggaa atcttctaaa ctataccctt cagggcttct tgcactacct tggtcaaacc
     2941 atttaaagga tacatagtga tagtgatctt gatgcggaat taccagagtc ccgttgcgta
     3001 cttcggtcgc atagccagca ttgtaggtca gtgcttcgaa aggaacgact ttcttcgctt
     3061 ccactcggtt ataaatttcc tctgctgttt ctttggcaac ttgtggctgt tctggcgttg
     3121 ttgtctcgcc tgcacttgct cctgtttcag ttggtgcagg tgttgacggt gaactagaat
     3181 tagatttctc acgttgagcc accatagcct ctgctgggat cagctcgctt aagtaattca
     3241 aatcactctt gttaatccga cggtaaccat ctgtaatcac acgtgggatg cgatagttat
     3301 ccgtacctat tttcactttg ggatctaata ggtctgctgg gtcaaaaata tagccatctt
     3361 ttgttgtata ttttcctgct accttagctt ctgccaactc ttctgctgag tgaacaattt
     3421 gccaattttt caaacctgca cgtttctcaa tcggtgtgac atttttcgcc aattcttcag
     3481 catctcgttt atcaagaaga gtttgtacag cttccaattc ttctttagat aaatctttct
     3541 tggaaattga acgtagagaa cctcctgtcg ctcttggtag actgaatgct tgactaaaga
     3601 caaaacttgc tggatctagt acatcttctg cagagaagat atagccatca tttgtcgcaa
     3661 atttcccttt tgcacgtgca tccatgactt cttctgctgt gtgaatgatt tgccaatttt
     3721 tcaagcctaa gcggtttgct ttaggtgttg catttagaat tggaggaaca agatccgttg
     3781 cttctccatc accatgtcca cttgtagtcc aagcagatgg acgaatttca ggatgttgca
     3841 tgatatagcg gatcgttgca atttgttccc tactcaacca tgtgtaaggt aggacatgga
     3901 tgtgatcaat gtgtggaata ataaaggatt gtccagtatc ataggttgca ttcgctccct
     3961 tcatcggaat ttgatccata ccgaccaaca tggctggctt aagatctcct tctgcaagcg
     4021 gtgcaatatc aaagatatac tgcttatctt tttctgccaa ggtcaactca gcaaaagaga
     4081 ttttcatcaa atctagttcg tcacgactat atgtataagt ttttccacct acttccattc
     4141 cataaacaac ttttccagcc aatttacgtt tagccgttac ttgtttgtac tcaaatgcag
     4201 ggcgattttc ttcttgaatt ggttttacag gttttgaatc attcccttga cttggtgttg
     4261 tgggtttagc atcgtttcct acttgttcag atgttttcgg cggcacttgt ttgcccgcct
     4321 tctcattaac ccattcctct acttgcttga tttcaaaatc ttcgagttct ccaaaaccaa
     4381 cataatggaa atgatctcca tgactggcta tcaacccttg atcatcaacc gaggtaatag
     4441 agtctttgct aaaggtgtat ccatcacttg taaaatatgc cttaccatct aatccttttc
     4501 cgtaagcagg aatttgacgt cccatatagg aaaccacttt ccctgttgac tgcttcggtt
     4561 gtgttggtaa tactggttgt gtaggcgaca ccggttgcgt tgtaaccgtg tcgattggtg
     4621 ttactggacg atttggttgt gttggtgtat gttgggagtg acttgcttgt gcgccagaag
     4681 aaacacctgc tccatttaca ccaatcattc gagaaatctt ctcttctaga ggagacatct
     4741 ggctgtatgg aataaagtgg taatggtcgc cgtgtggaac gatgacacct gctgcggttt
     4801 tcttcgtaat cgttcttggg tcaaatacca atccatctgc ttctacatgg cgttgagata
     4861 ggggtgttgc atccaattga gccaataaac tagccaaatc ctgaccttgc cccgcactaa
     4921 ttgttggctg ttgagctcta ttatttctat cgccatattg actaccacta gccgagctca
     4981 cacttccttt ttgattccag taatcttgag cagccttcaa ttcggcagct gataaatctt
     5041 ttttaggaat aaagtggaaa tggtcgccgt gcggaacgat aaagccatct cccgtgtctt
     5101 caataacatc tgtcggatta aagacatagc catcgtctgt tctgtagcgg ccatctttac
     5161 tatttcctgc tgcctgattt ttgctgtcag cagaagagat tcctttttgc cgctccactt
     5221 cttctttgct acgaacattt ttatgtttgc tagggtcttt tagatagaga tagtattttc
     5281 catcaacttt tatgacgtag ccatcctgga cttcattgat gatgtgactg tcttgtaaga
     5341 catagtttgg gtccttcatg accaactctt cactaaaaat cgcatcaaag gggactttac
     5401 cattatagta gtggaaatgg tcaccgtgtg atgttacata gccttgatca gtaattttaa
     5461 cgactatctg ctcagcgtca atattttcct tggcagaaac ttgatcaggt gttaattgtt
     5521 cagcaacggt agtttgtaca ctttgactat cttcaatata ggacacacga tttttttgct
     5581 cttccatcgc ttggaaacgt ccaagctgat agctacagag actcatccct aaaacaaggg
     5641 cggctacgga gccaacaact gcttttttct tcattttttc tcctttacgt gattattatt
     5701 tcaattcttg agcaagtgtc tctaaaacct gctctaagtt ttctaaatag gtcaagttat
     5761 tttcagggtc tgcttctaga ggatccaaga cctttaagtc cacacctgtc gaagttgcca
     5821 gagccttagc taatttatcc gacgttccct tttcggtaaa aatcgtttgt accttgtaag
     5881 tgtcgacaaa ctctttaatc tctgccaact gtctaggact tggctcttcc tctgaaactc
     5941 ctgcgatccc taactgcttc aacccgaagc gttgtgcagt gtaagagaag gctgtatgtt
     6001 gagtgacaaa tgtttttgat gtggctttta aaaagattgg gctatacttg tctgccaact
     6061 tttgcgcctt ttcctctaaa gttgcggcat tttgacgata ataatccgca ttcttaggat
     6121 cactttctgc taaaagttca ccaatcgcaa cagcttcctg accaaccaaa accggatcca
     6181 gccatgtgtg ggggtcatat aaactagctt catcaatccc ttgaccagct tccatgtctt
     6241 ctaaccctgg aacctttgtc agcggtaaat ttgtcgaagc ctccaaaacc ttgacagatg
     6301 aaccttgcaa attaggttcc aaacgtcctg cccaggattc caaaattcgc gaatgataga
     6361 taaaaacatc tgcatcgtat atggccttta tgtccgcagc cgatggttca taagagtgta
     6421 tgccctgtct tgagccaatc attcgaacat catttttatt ccctgacact tccttaacca
     6481 gtgaataaat cgggtaaaac gaggtgacta ttttcattcc tggctgcact tgactcgctt
     6541 ccttctgagc cgagcaagcc atcaagcaca aaccagctag aaccgaaaga caagctccaa
     6601 gtattttctt tagcatattt cctccttttc acaaaaaaat attaaccagt taagtttata
     6661 ccacaaaata attaaccagt caagtgttt
//
LOCUS       DASGAC010000115         6657 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.115, whole genome shotgun sequence.
ACCESSION   DASGAC010000115 DASGAC010000000
VERSION     DASGAC010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6657)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6657)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6657
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.115"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            5..805
                     /locus_tag="U1335_001618"
     CDS             5..805
                     /locus_tag="U1335_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEM5232080.1"
                     /translation="MKKILALAATVLAGLTLAACSSTSSQSALDKIKEKGTLVVATSP
                     DYAPFEFQALVDGKNEVVGADIMLAQKIADELGVKLEVSAMSFDNVLSSVQNGKADIA
                     IAGLSYSEDRAKVFDFSESYYQISDVLLIKKDSANSLTSIDAMSGKTLAVQKGSTQES
                     YAQENISQANLISLTLMGEAVNELKSGKVDAILMDSPVAAGYVSQNSDLAVASVEFPT
                     IDENSKVIALPKGSAELKTAIDKVIAEVKASGEFDTFLEKAATYTSVE"
     gene            complement(933..2771)
                     /gene="glgB"
                     /locus_tag="U1335_001619"
     CDS             complement(933..2771)
                     /gene="glgB"
                     /locus_tag="U1335_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein GlgB"
                     /protein_id="HEM5232081.1"
                     /translation="MTEFTDLDLYYMNAGEHTTLYEKMGAHIIKERNKIIGTQFRVYA
                     PNAREVFLVGNFNEWQRSHSMEREIDGVFQLYVDGLKSLEDYKYLIITHDGREIYKAD
                     PYAFFSQVRPDTASTTYNSRYKFKDDIWMYNRVNYDFKEQPVSIYEVHLGSWKQKFAN
                     KNEGGAPVEAFNSYKEITPLLIEHIKENNYTHIELLPITEHPLDASWGYQVTGYYSPT
                     SRYGKPDELKYLVDQCHQAGIGVILDWVPLHFCKDAHGLYQFDGSWLYEYSYEQDREN
                     HQWGTANFDLGKGLTRSFLLSNLKYWLEYFHFDGIRVDALSYLLYWRGETDEDKINHA
                     AIDFIKRVNAMVHTDYKGVLMIAEDSSSFPKVTHSLEDGGIGFDMKWDLGWMNDTLKF
                     VERPAIYRKYHSNEITFGMYYNQNEQFLLPLSHDEVVHGKHSIIEKMNGDYEDKFHLA
                     RVYYSFYFAHPGKKLLFMGNEWGHIREWHEYTEMDWGLLQFPIHHSFYQMMKTLSTFY
                     KEHDAFWKYDYQAYEKGFNWVKIDEEASLYAFSRTSDEQEILTIHNFNDQELFDVHLD
                     LPAESEYKLVFSSNAIPIDTFSLYPDENGARITVPRLTSFYLERVK"
     gene            complement(2843..4288)
                     /gene="glgA"
                     /locus_tag="U1335_001620"
     CDS             complement(2843..4288)
                     /gene="glgA"
                     /locus_tag="U1335_001620"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HEM5232082.1"
                     /translation="MTKKSVLFVASEGLPFIKTGGLADVIGSLPKELVKQGLDVRVVL
                     PLYKKIAINNHADFDYVSSFDVRAGDIQSMANVYSQVVDGVTFYFIEHRDFFERDELY
                     GYDDDAMRFGYFQHATCRLLEALHFFPDVMHTHDWHTAALPFLCRTFYSYREEFRNIK
                     HVFTIHNLAFQGIFHKQALWSALGMDYSYYLDGIARFHDECISFMKLGILYADKVTTV
                     SETYAREILTEEFGENMQHVLELRKYDLVGIVNGIDYDSWDSQTDQYLVRNYSLETIE
                     SKKANKLALQAQFALPQDENVLLIGIVSRLTWQKGFYLLTEVLGHLLQAHVQFVILGN
                     GEEDIENAFNHFKHAYPDKFAFYRGYNEPLAHQIYAASDLFLMPSMFEPCGISQLISM
                     HYGTLPLVRETGGLVDTVAPYNMSTKEGTGFSFGGRDAYNMRQVYDLALQTYYDRPDD
                     WYAMVEQAMKRDFSWTASAEKYIWLYREISG"
     gene            complement(4297..5412)
                     /gene="glgD"
                     /locus_tag="U1335_001621"
     CDS             complement(4297..5412)
                     /gene="glgD"
                     /locus_tag="U1335_001621"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase subunit
                     GlgD"
                     /protein_id="HEM5232083.1"
                     /translation="MLRNTLGIVNIEGNNVHFGDVMKHRGVQAFGFLGRYRLIDFALS
                     NMSNSGITEFQVYMPAEMRSTIQHVGTGKHYNINSKRGTLRLLNSATDPNSVYRHDIN
                     AFTENIHYIEKSTKDYVLVAPSYFICSQDFSKVMDDHIATDADITVLYKNVSDAKENF
                     IGCQTLKFGEDRRVVAFEENHGKYKNRPVSLEAYIMKRTTFIDLIKRANKVSSLYWLK
                     DILRDTVDQYKIMGYAHRDYVACINTTASYFNTQIELIDQDTRKLLFKHDWPIHTQTS
                     DSSPCLYGPLAEVKRSLISNGANINGQVENSVIDRDVIIEEGVVIKNSIILNGVTIKS
                     GANIENAIIDKATKIIHPIDIKGSETSPSYLKPHQII"
     gene            complement(5425..6552)
                     /locus_tag="U1335_001622"
     CDS             complement(5425..6552)
                     /locus_tag="U1335_001622"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HEM5232084.1"
                     /translation="MAQNKMLAMILAGGRGTRLEGLTKKVAKPAVAFGGKYRIIDFPL
                     SNCANSGIDIVGVLTQYEPVLLNSYVAQSQRWGLDVQGSGVFVLPPSEKIEGFGLYKG
                     TADAITQNIDFIDLHDPEYVLILSGDHIYKMNYDKLLDTHIQKKADATIAVIEVPIKE
                     ASRFGIMNTDEDYRIEEFEEKPENPKSNLASMGIYIFTWKTLKKYLQEDDKLDTSSHD
                     FGHDIIPKYLEDGRTLIAHPFRGYWKDVGTVNSLWESNMDLIDHAGDLDLSDRSWRIY
                     SEDKGSPAQVIGATATVKSAYIDKGAVIDGTVEHSVISTDVQVNQNAVVKNSVVLPGA
                     IIGEGVELDYVIVAENIKIADGVKLTGDIDHILLIDKNVTK"
BASE COUNT         1975 a         1300 c         1352 g         2030 t
ORIGIN      
        1 aaatatgaaa aaaatcttgg cattagcagc aacagtttta gcaggactga cattggcagc
       61 ttgttcttcg acgtcatcac aatctgcatt agataaaatt aaagaaaaag gaacattggt
      121 agtggcaact agtccagact atgctccatt cgagtttcag gcactagttg atggaaagaa
      181 tgaagttgtt ggtgcagata ttatgttggc tcaaaaaata gccgacgaac ttggggtcaa
      241 gcttgaagtt tcagcaatga gttttgacaa tgtattgtct agcgttcaaa atggcaaagc
      301 tgatattgca attgctggtc tatcttattc ggaagatcgt gcaaaagttt ttgatttctc
      361 tgaaagttac tatcaaattt ctgatgtatt acttatcaaa aaagatagcg ccaattcact
      421 cacttcaatt gatgctatga gcgggaaaac tctcgcggta caaaagggtt caacacaaga
      481 atcctacgca caggaaaaca ttagtcaagc taacctaatt tctttaacct tgatgggtga
      541 agctgtaaat gagctcaaat caggaaaagt tgatgctatt ttaatggatt ctccagttgc
      601 tgctggttat gtttcacaga attcagattt agccgttgca tccgttgaat ttccaacgat
      661 tgatgagaat tcgaaagtca ttgctttgcc aaaaggtagt gcagaactaa aaactgcgat
      721 agacaaggtt atcgcagaag taaaagcaag tggtgagttt gatactttcc ttgagaaagc
      781 tgcaacatat acaagtgttg aataagagaa atgaacaatc atcggaaacg gtggttgttt
      841 ttgcatgcaa aaaagaatgg agtaagtgag ccactcccca aaagttagac agaaaatttg
      901 ggtcggttca atactccatt ttttatagat aattatttca cacgctctag ataaaaactg
      961 gtcaaacgtg gtacagtaat tctggctcca ttttcatcgg gatagaggct aaatgtgtct
     1021 attggaatcg cattagatga gaagacaagt ttatattcgc tctcagctgg caaatccaag
     1081 tgtacatcaa acagttcttg atcattaaag ttatgaatag tcaagatttc ttgctcatca
     1141 ctagtgcgag aaaaagcata caggcttgct tcttcatcta tttttaccca attaaatcct
     1201 ttttcatagg cttggtagtc atatttccag aaagcatcat gttctttata gaaagtagat
     1261 agtgttttca tcatttgata gaaagaatgg tggattggaa attgtagcag tccccagtcc
     1321 atttctgtat attcgtgcca ttcacggata tgaccccatt catttcccat gaagagtaat
     1381 ttctttccag gatgggcaaa gtaaaagctg tagtagactc gagccagatg gaacttatcc
     1441 tcgtagtcgc cattcatctt ctcgataatg gagtgcttcc catgaacaac ttcgtcgtgc
     1501 gaaagtggta gtaagaattg ctcgttttgg ttatagtaca taccaaaagt gatttcattt
     1561 gagtgatatt ttcgataaat agcagggcgt tccacgaatt ttagtgtatc attcatccag
     1621 cccagatccc atttcatatc aaatccaata ccgccatctt ctagagaatg tgtgacttta
     1681 gggaagcttg aagagtcttc agcaatcatc aggactccct tatagtcggt atggaccatg
     1741 gcattgacac gtttgataaa gtcaattgcg gcatgattta tcttatcttc atctgtttca
     1801 ccacgccaat agaggagata agatagtgca tcaacacgga tgccatcaaa atggaaatat
     1861 tccaaccagt attttaaatt agaaagaagg aaagagcgag tcagtccttt tccaaggtca
     1921 aaattagcag tcccccactg gtggttttca cggtcttgtt cgtaggagta ttcgtatagc
     1981 caactaccat caaactggta gagcccatga gcatctttac agaaatgaag tggtacccag
     2041 tcaagaatca ctccaattcc tgcttggtga cattggtcaa ctaaatactt aagttcatct
     2101 ggcttgccat agcgactagt tggactgtag tagcctgtta cctgatagcc ccaagacgca
     2161 tcgagaggat gctcggtaat tggcaataat tcaatatgtg tgtagttatt ttccttgata
     2221 tgttcgatga gaagtggagt aatttcctta taactattga aagcttctac aggagctcct
     2281 ccttcatttt tattagcaaa tttttgcttc cacgaaccta agtgcacctc gtagatggat
     2341 actggctgtt ctttaaaatc atagttaaca cgattataca tccagatgtc atctttgaat
     2401 ttataacgcg aattgtaggt tgtagaggca gtgtctggac gaacttggct gaaaaatgca
     2461 taagggtcag ccttatatat ttcacgccca tcgtgtgtga taatcaggta tttataatct
     2521 tcaagggatt ttaatccatc tacataaagt tgaaacactc catcaatttc acgctccata
     2581 gagtgactac gttgccactc gttaaagttg ccaactaaga atacttctct ggcatttggg
     2641 gcatagacac gaaattgggt tccgataatt ttgtttcgtt cttttataat gtgagcaccc
     2701 attttttcgt aaagagtggt atgctcacca gcattcatat aatataaatc taggtcagta
     2761 aattctgtca tagcaatctc cttgttgaaa aggagtggac cttggtcgca ctccgattca
     2821 gtttattttt tcatcttatt tcctaaccac taatttcacg gtagagccag atgtatttct
     2881 ctgccgaagc tgtccaacta aaatcacgct tcatagcttg ttcaaccatg gcataccagt
     2941 catcgggacg gtcatagtag gtttgaaggg ctaaatcata gacttgtcgc atattgtaag
     3001 cgtcacgccc tccaaagcta aaaccagttc cttccttggt agacatattg tatggtgcta
     3061 cagtatcaac caagccacct gtttcacgca ctagagggag tgttccgtag tgcattgaaa
     3121 tcaactggct aataccgcat ggttcaaaca tagaaggcat gaggaagaga tcacttgctg
     3181 cataaatttg gtgggcaagt ggttcattgt aaccacggta gaatgcaaat ttatcaggat
     3241 aagcatgttt aaagtgatta aaggcatttt caatgtcttc ctcaccattg cctaagataa
     3301 caaattggac atgggcttga agaagatggc caagtacctc ggtcaagagg tagaaccctt
     3361 tttgccatgt caaacgagag acgataccta tcaataggac attctcatct tgtggaaggg
     3421 caaattgtgc ttgcagggcc agtttattag cctttttact ttcaatcgtt tcaagactat
     3481 aatttctcac aaggtactgg tctgtttgac tatcccaact gtcatagtcg ataccattga
     3541 caataccaac caagtcatat ttgcgcaact ctagtacatg ttgcatgttt tcgccgaatt
     3601 cttccgttag gatttcgcga gcataagttt cagaaactgt agtaaccttg tcagcgtata
     3661 ggataccaag cttcatgaag ctgatacatt catcatgaaa acgtgcaata ccatccaaat
     3721 agtagctata gtccatgcca agcgctgacc aaagtgcttg tttgtggaaa attccctgaa
     3781 aagccaagtt atgaatagtg aatacatgct tgatattgcg gaattcttcg cggtagctat
     3841 agaaagtacg gcaaaggaat ggaagggcag cagtgtgcca gtcatgtgtg tgcatgacat
     3901 ccgggaagaa atgaagtgct tctaacagac gacatgtagc atgttggaaa tagccaaaac
     3961 gcatggcatc atcgtcatat ccatatagtt catcgcgttc aaagaaatcg cggtgctcaa
     4021 taaaatagaa tgttactcca tcaacaacct gactgtaaac atttgccata gattggatgt
     4081 cgccagcccg cacatcaaaa cttgatacgt aatcgaaatc agcatggtta ttgatagcaa
     4141 ttttcttata gagaggaagt accactcgga cgtccaatcc ctgttttacc aattctttag
     4201 gtaaggaacc gattacatcg gccaaaccac cagtcttgat gaatggaagt ccttcagatg
     4261 ctacaaagag aacagatttt tttgtcatgt tagctcctaa atgatttggt gtggtttcaa
     4321 gtatgaaggc gaagtttcgc ttcccttgat gtcaattggg tgaataattt tagttgcttt
     4381 atcgataatt gcattttcaa tattcgcccc actcttgatt gtcacgccat tgagaatgat
     4441 tgagtttttg ataacaacac cttcttcaat gataacatcg cggtcaatga ctgaattttc
     4501 gacttgacca ttgatgttcg ctccatttga aattaggcta cgtttgacct ctgccaatgg
     4561 accatacaaa catggtgagc tatcacttgt ttgggtatgg attggccaat catgtttgaa
     4621 gaggagtttg cgggtatctt ggtcaatcaa ttcaatttga gtattgaagt aggaagcggt
     4681 cgtattgata catgcgacat aatcacgatg tgcatagccc ataatcttgt actggtcaac
     4741 tgtatcacgt aaaatatctt ttaaccagta gagagacgac actttgttag cacgtttaat
     4801 caagtcgata aatgtagtcc gtttcataat gtaggcttca agggaaacgg gacggttttt
     4861 atatttaccg tggttttcct cgaaagctac gacacgacgg tcttcaccaa atttgagagt
     4921 ttgacagccg atgaaatttt ctttagcatc tgaaacgttt ttataaagaa cggtaatatc
     4981 agcatccgtt gcaatatggt catccatgac ttttgaaaaa tcctggctac agatgaagta
     5041 agatggagca actagcacat aatcttttgt agacttttcg atgtagtgga tgttttctgt
     5101 gaaggcatta atatcgtgac gatagacact atttgggtct gttgcgctat tgagcaagcg
     5161 aagggtaccg cgtttgctgt tgatattata gtgtttccct gtaccaacgt gctgaattgt
     5221 tgaacgcatt tcggcaggca tgtatacttg gaattctgta attccagagt ttgacatatt
     5281 ggatagagca aagtcaatta ggcgataacg acctaagaaa ccgaaagctt gtacgccacg
     5341 gtgcttcatc acgtcaccaa aatgtacgtt gtttccttca atatttacaa ttccgagagt
     5401 atttcttagc atagcagtcc tttcttactt ggtcacattc ttgtcaatca agaggatatg
     5461 gtcgatgtct cctgtgagtt taactccgtc ggcaatttta atattttcag cgacgatgac
     5521 gtagtcaagt tcaacacctt cgccgataat agcaccaggc aggacgacag aattttttac
     5581 tacggcattt tggttgacct gtacatctgt tgaaataaca gaatgttcta ctgtaccatc
     5641 aataactgcc cctttatcaa tataggcaga tttaacagtt gcagtcgcac caatgacttg
     5701 ggcaggagaa cccttatcct ctgaatagat tctccatgag cggtcagaga ggtccaaatc
     5761 tccagcgtga tcaatcaagt ccatattgga ttcccagagg ctgttaacgg tacctacgtc
     5821 tttccaataa ccacggaatg gatgggcaat gagagtgcgg ccatcttcta agtatttcgg
     5881 aatgatgtcg tgcccaaaat cgtgagatga agtgtccaat ttatcatctt cttgaaggta
     5941 ctttttcaag gtcttccaag tgaagatata gatacccatt gatgctaaat tgctcttagg
     6001 attttctggt ttttcttcaa attcttcaat acggtaatct tcgtccgtat tcatgatacc
     6061 aaaacgtgaa gcttctttga ttggaacttc gataaccgca atcgtagcat ctgctttttt
     6121 ctgaatatgt gtatcaagga gtttgtcgta gttcatctta tagatgtggt caccagacaa
     6181 aatcaatacg tattctggat cgtgaagatc aatgaaatca atgttctgtg taatagcgtc
     6241 agctgtacct ttgtaaagtc cgaaaccttc gattttttca ctcggtggta atacaaagac
     6301 gccagatcct tgtacatcaa gcccccaacg ttgagactgt gcaacgtatg agttcaagag
     6361 aacaggctca tactgagtca aaactccgac aatatcaata cctgagttgg cacagttact
     6421 gagaggaaag tcaataatgc ggtactttcc gccaaatgcg accgctggtt tggcgacttt
     6481 ttttgtcaac ccttctagac gtgttccacg tccaccagca agaatcatag ctaacatttt
     6541 attttgagcc atctaaccac tccttaatat atatgatatg tctattatat cataaattat
     6601 aaaaaaatga aaacgtttcc tataaagaaa ttgaaatatt tcaaatttct tttcaac
//
LOCUS       DASGAC010000116         6604 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.116, whole genome shotgun sequence.
ACCESSION   DASGAC010000116 DASGAC010000000
VERSION     DASGAC010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6604
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.116"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            260..727
                     /locus_tag="U1335_001623"
     CDS             260..727
                     /locus_tag="U1335_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5232085.1"
                     /translation="MTIRKARQSDIPILNELLQDILQVHHQARPDIFKSAGQKFSEAE
                     LVALLENPDKPIFVFELEGQVVGHLFCELSTATGDVLEPVKTLFIDDLCVANSARGQR
                     IGEQLYEFALSYAKEQGCHNLTLDVWADNAGAVRFYERQGMKPQKFRMEQIIE"
     gene            complement(867..2153)
                     /locus_tag="U1335_001624"
     CDS             complement(867..2153)
                     /locus_tag="U1335_001624"
                     /EC_number="1.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase,
                     degradative"
                     /protein_id="HEM5232086.1"
                     /translation="MSTFSGFYKKSRQERIDILRQNRSLAEDSLDILYKDENLPEAIA
                     GKMAENHLGTFSLPFSVLPELLVDGQTYSVPMVTEEPSVVAAASFGAKIIAKSGGFTT
                     TIHNRIMIGQVALYDISDHSRATQAILDQKESILETANQAHPSIVKRGGGARELTVES
                     KDEFLIVYLQVDVQEAMGANILNNMLEAVKDDLEELSKGQALMGILSNYATESLVTAQ
                     CHITISSLATSSAIAQETAQKIALASKLAQVDPYRAATHNKGIFNGIDAVVIATGNDW
                     RAVEAGSHAYASRDGQYKGLSTWSIDGEHLVGSITLPLPIASVGGSIGLNPKVAVAFD
                     LLQQPKARQLASIIASVGLCQNFAALRALVTSGIQAGHMKLHAKSLALLAGAEEHEVD
                     QLAQLLRKEKHSNLKTAQNLLAKMREHWEWERTRPR"
     gene            complement(2711..3880)
                     /locus_tag="U1335_001625"
     CDS             complement(2711..3880)
                     /locus_tag="U1335_001625"
                     /EC_number="2.3.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HEM5232087.1"
                     /translation="MNIGIDKIGFAAPDYVLDLADLAQARNVDPNKFKIGLLQSEMAV
                     APVTQDIISLGTKAAEAILTEEDKQTIDMVIVGTESSVDQSKAAAVTIHGLLGIQPFA
                     RSIEMKEACYGATAGLSLAKSHIAQFPESKVLVIASDIAKYGVASGGEPTQGAGAVAM
                     LVTANPRILVLNNDNVCQTRDIYDFWRPNYDKYPRVDGKFSTEQYTDCLTTTFDYYQQ
                     KTGKTLNDFAAMCLHIPFSKQGLKGLQAIAQDEETLSRLTERFQEAIVYNKVVGNIYT
                     GSIFLSLLSLLENSRALETGDQILFYSYGSGAVCEIFSGQLVEGYRDHLQENRLEQLN
                     QRTKLSVKEYEQVFFEEITLDETGSSLDLPEDQSPFALIKVDNHKHIYRKYSRMN"
     gene            complement(3909..5093)
                     /locus_tag="U1335_001626"
     CDS             complement(3909..5093)
                     /locus_tag="U1335_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HEM5232088.1"
                     /translation="MKKVAIVSAYRSAIGSFGGSLKDIEIADLGAQVLETALANKNIP
                     ADSVDEVIFGNVLSAGQGQNIARQIAIRAGIPQTASAYAVNKVCGSGLKSVLLAAQSI
                     MLGDNDVVVAGGIEIMSQAPYLSKTSRFGSKFGHITLEDSMLTDGLTDAFNDYHMGIT
                     AENVAEHYQVSRAEQDAFTYSSQEKAAKAIAEGRFVDEIVPIRLKNRKGETIFATDEY
                     PRLTPIEKLATLRPSFKKDGTVTAANASGINDGCAVLVLMSDEKASELNIQPLAYIEA
                     YATSGLDPALMGLGPITASQKALQKLNKTVEDIDLFELNEAFAAQSIPVVKQLGIDPA
                     KVNVNGGAIALGHPIGASGSRILVTLIHELIKQEKELGLCSLCIGGGQGISLIVSNAQ
                     TS"
     gene            5319..6011
                     /locus_tag="U1335_001627"
     CDS             5319..6011
                     /locus_tag="U1335_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate mutase"
                     /protein_id="HEM5232089.1"
                     /translation="MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIK
                     EAGIEFDLAFTSVLKRAIKTTNLALEAADQLWVPVEKSWRLNERHYGGLTGLNKAEAA
                     AEFGDEQVHIWRRSYDTLPPEMAKDHEHSAHTDRRYAHLDDSVIPDAENLKVTLERAL
                     PFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKQLSDDEIMDVEIPNFPPLVFELDE
                     NLNIVKEYYLEA"
     gene            6117..6500
                     /locus_tag="U1335_001628"
     CDS             6117..6500
                     /locus_tag="U1335_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM5232090.1"
                     /translation="MASKKMLHACLRVENLEASQKFYEEAFGFKETRRKDYPEHKFTL
                     VYLALEGDDFEIELTYNYDRGPYIVGDGFSHLALSSDDLEGDNAKHKKLGYPTTDIKG
                     LPGSPGRYYFVTDPDGYRVEVIRAD"
BASE COUNT         1830 a         1345 c         1494 g         1935 t
ORIGIN      
        1 acatcaacgt ttttgacact tttggtggtt tcaaactgtc aaactcccga gaaactttag
       61 tagttttcta cactacacat tctcgtttta agacaacaaa aaaccagcct tggccagctg
      121 attttttagg agatttatga aaaattttag gatacactta tagtatacat gaattttcag
      181 attcttcatc ggtctgtaga cctattttgt taaaaaatga acatgtgcta taataataaa
      241 aactcaaaag gagagtatta tgacaatccg taaagctaga caatctgaca ttccgatatt
      301 aaatgaattg cttcaagata ttttacaggt gcatcaccag gcaagaccag atatttttaa
      361 aagtgcaggt caaaaatttt ctgaggctga attagtagca cttttggaaa atccagataa
      421 gcctattttt gtctttgagt tagagggaca agtggttggg catctttttt gtgaattatc
      481 taccgcaaca ggcgatgttt tagaaccagt taaaaccttg tttattgatg atttatgtgt
      541 agccaattct gcgcgtggtc aaagaattgg cgagcagctt tatgaatttg ctctttccta
      601 tgctaaggag cagggttgcc acaatcttac cttggatgta tgggctgaca atgcaggagc
      661 tgtccgtttt tatgaacgcc aaggaatgaa accacaaaag ttccgtatgg agcaaataat
      721 agagtgaggc tgggcaaaaa gcctaggacc actactcaga gttcgtgtca acatctcagc
      781 gcagtggttg attggcagat ttgttcgtgt tttacactcc aaatctggcc taatcaactg
      841 tgcgggggtg ggaagacgaa ctctttttat cttggtcgag ttctttccca ctcccaatgt
      901 tctctcattt ttgctaataa gttttgagca gtttttaggt tgctgtgctt ttctttccgc
      961 aggagttggg ctagttggtc tacttcatgc tcctcggcgc cagcaagtag cgctagggat
     1021 tttgcgtgga gcttcatgtg accagcctga atccctgaag taacaagagc acgcagggca
     1081 gcaaagttct gacagagacc gacagaagcg atgatagaag ctaattggcg tgcctttggt
     1141 tgttggagaa ggtcaaaagc gactgctacc tttggattga gcccgataga gccaccgacg
     1201 gaggcaatcg gaagaggtag ggtgatggag ccgaccaagt gctcgccatc aatggaccaa
     1261 gtagaaagcc ccttgtattg cccatcacgg ctggcataag catgggaccc ggcttcgact
     1321 gcccgccagt catttcctgt agcgataacg acagcatcta taccattaaa aatccctttg
     1381 ttatgtgtcg cagcacgata agggtccact tgcgccagtt tgcttgccag ggctattttt
     1441 tgagcagttt cttgagcaat ggcagagctg gtagccagac tagagatggt aatatggcat
     1501 tgggcggtaa ccagtgactc cgttgcatag ttggagagga ttcccatcaa agcctgtccc
     1561 ttgctgagct cttctaagtc atccttaaca gcttctaaca tgttattgag gatattggct
     1621 cccatggctt cttgtacatc aacctgaaga tagacaatca aaaactcatc cttactctca
     1681 acagtcaatt ctcttgcacc gccccctcgt ttgacaatgg aagggtgtgc ttgattggca
     1741 gtttctaaaa tactctcctt ctggtcaaga atcgcttgtg tcgctctgct atggtccgaa
     1801 atatcgtaga gagcaacttg tccaatcatg atacggttgt gaatagtcgt tgtaaaaccg
     1861 ccagatttag cgatgatttt ggctccgaaa gacgcagctg caaccacaga aggttcttca
     1921 gtaaccatcg gtacagaata agtttgtcca tccactagaa gttctggaag tacagaaaaa
     1981 ggtaaggaaa acgttcctag atgattttct gccatctttc ccgcaattgc ttctggcagg
     2041 ttttcgtctt tgtatagaat gtctaagcta tcttcggcta gggaacgatt ctgacggaga
     2101 atatcaatgc gctcttggcg tgatttttta taaaatccgg aaaaagttga cataggttcc
     2161 tctttctata ggaaagcgcc ccttggtgag agccaaaggg cgccgttttg gcttttatag
     2221 tcatttgaat tagcttgata catcgtcact ttcggcttgc cgtactctgc gaaagtgagg
     2281 ctgggcaaaa agaccaacct cgcttctcag ggttcgtgtc aacatctcag cgcagtggtt
     2341 gattgggttt aacagtccag tggactgtta aaggttggag ataagatttg cgaagcaaat
     2401 ctcagcaatt cgtgttttac actccaaatc tgaccattac gactgatgcg aacagagttc
     2461 gcttcatttc caacctagaa cagtcactac tgacttaacg actgttgcga acttcgttcg
     2521 ctatatctcc aacctccaaa ggttccccga acctttggag ctatgggggg agtgaaacag
     2581 tctgggaata gactgtttca gctcaacaac tagaaataaa gacttgttga cgaactcttt
     2641 ttttgaccag tcgagttctt tcccgctccc ttatttctag ctacctgcac ctcagttcct
     2701 tgtctgaaag ctaattcatt cgactatatt tacgatagat atgtttgtga ttgtccactt
     2761 tgataagggc aaagggactt tggtcttctg gtaggtcaag ggatgaacca gtttcatcaa
     2821 gggtaatttc ttcaaagaaa acttgttcgt attccttaac gctgagtttt gtacgctgat
     2881 tgagttgttc taaacgattt tcttgtaagt ggtcgcgata accttcaacg agttgaccgc
     2941 tgaaaatttc acagacagcg ccactaccat agctataaaa gaggatttga tcccctgtct
     3001 ctaacgctct gctattttcc aaaagggaaa gaagagagag gaagatagag ccagtgtaga
     3061 tgttgccgac aaccttatta tagacgatag cttcctggaa acgttctgtc aggcgactaa
     3121 gagtttcttc atcctgagca atagcttgca gtcctttaag accttgtttg gagaaaggga
     3181 tatgtaagca catggcagca aaatcgttga gggttttgcc tgttttttgt tgatagtagt
     3241 cgaaagttgt cgtcaagcaa tcggtgtact gttcagttga aaatttacca tcaacacgtg
     3301 gatatttgtc gtagttagga cgccagaagt cgtagatgtc acgtgtctgg cagacattat
     3361 cattgttgag gaccaaaatt cgtgggtttg cggttaccaa catggcaact gcaccagcac
     3421 cttgggtagg ttcaccgcca gaagcgactc catattttgc aatatcacta gcaatgacta
     3481 ggacttttga ttctgggaat tgagcgatat ggcttttggc aagacttagt ccagccgttg
     3541 caccgtaaca agcctccttc atctcgatgg agcgagcgaa gggctgaata ccgagtaatc
     3601 catgaatggt aacggcggca gccttacttt gatctacact agattctgtg ccgacaataa
     3661 ccatgtcaat ggtttgttta tcttcttctg tcagaatggc ttcggcagcc tttgtcccaa
     3721 gactgataat atcttgagtg acaggagcta cagccatttc agactgaaga agaccaatct
     3781 taaatttatt tgggtccaca ttgcgggctt gggctaaatc agccaaatct aaaacataat
     3841 cgggtgccgc aaatccgatt ttatcaatac cgatgttcat aatatatcct ttgtgtacaa
     3901 atgataggtt aacttgtttg cgcattggaa acgattaggg agataccttg accgcctccg
     3961 atacaaagtg agcaaagacc aagctctttt tcttgcttga ttaattcgtg aatcagagtg
     4021 actaggattc gactaccact agctccgatt ggatgtccaa gggcgatagc accaccattg
     4081 acattgactt ttgcaggatc aatgccgagt tgtttgacaa ctggaattga ttgggctgcg
     4141 aaagcttcat tgagttcgaa tagatcgata tcctcgactg ttttattcag tttttgtagc
     4201 gctttttggc tagcagtaat aggtccaagc cccatcaatg cgggatctaa accgcttgtt
     4261 gcataggcct caatataggc gagtggctgg atatttagct cactggcttt ttcatcagac
     4321 atgagtacca agacagcaca gccgtcgttg atgccagaag cattggctgc ggtgacggtt
     4381 ccatcctttt taaaagatgg ccgaagtgtt gccaattttt caattggtgt cagacgaggg
     4441 tactcatctg tggcaaaaat agtttcgcct ttccgatttt ttagtctaat aggaacaatt
     4501 tcgtcaacaa atcttccctc agcaatagct tttgcagcct tctcttggct actgtatgta
     4561 aaagcatctt gctctgcgcg actgacttga tagtgttcag caacattttc tgcagtaatg
     4621 cccatgtgat agtcgttgaa ggcatctgtt agaccgtctg tcagcataga atcttctaga
     4681 gtaatatgac caaatttact accaaaccgg ctagttttgg atagataggg tgcctggctc
     4741 atgatttcaa tgcccccagc cacaactaca tcattgtcac ctagcatgat tgactgggca
     4801 gccaggagga ctgatttgag accggaacca cagactttat tgactgcata ggcagaggct
     4861 gtctgaggaa tgcctgcacg aatagcaatt tgacgtgcaa tattttgtcc ttgtcctgct
     4921 gaaagaacat ttccgaagat aacttcatca acgctgtctg cagggatgtt tttattagct
     4981 aaggctgttt cgaggacttg cgcccctaaa tcagcgattt caatatcttt cagactgcct
     5041 ccgaagctgc cgatagcaga acgataggca gacacgatag ctactttttt catgataact
     5101 cctatagtgg tatcgttttg aactgtcgtg ttcagcctta ctattatacc attattttgt
     5161 attttttcta agaagaaaga taggtctaga gactgaattt acatgaaaga gtaatgaaag
     5221 cgtacacaga ttgtggaaag gctggcattt ttttaccttt tcgtgtaaaa tagagaagta
     5281 taagagggga acctcaaaat ttaaaggaga atccataaat ggtaaaattg gtttttgctc
     5341 gccatggtga gtctgaatgg aacaaagcta accttttcac tggttgggct gatgttgatt
     5401 tgtctgaaaa aggtacacaa caagcaatcg atgcaggtaa attgatcaaa gaagcaggta
     5461 tcgaatttga ccttgctttc acatctgtat tgaaacgtgc tatcaagact acaaacttgg
     5521 ctcttgaagc tgcagatcaa ttatgggtac cagttgaaaa atcatggcgt ttgaacgaac
     5581 gtcactacgg tggtttgact ggcttgaaca aagctgaagc agctgctgaa tttggtgatg
     5641 agcaagttca catctggcgt cgttcttatg atactttgcc accagaaatg gctaaagatc
     5701 atgagcattc agcacacact gaccgtcgct atgcacacct tgatgattca gttattccag
     5761 atgcagaaaa cttgaaagta acgcttgagc gtgcccttcc attctgggaa gataaaattg
     5821 ctccagcatt gaaagacggt aaaaacgtat tcgtaggtgc acacggtaac tcaatccgtg
     5881 cccttgtaaa acacatcaaa caattgtctg atgacgaaat catggatgtg gaaattccaa
     5941 acttcccacc acttgtattc gaattggatg aaaacttgaa cattgtgaaa gagtactact
     6001 tggaagcata atttagtaac acctgagctt ggctcgggtg tttttgtgta cggtaaagca
     6061 gattttttac ggactttgtg ctatactaca tgtatcaaaa gacaaagggg ttactcatgg
     6121 caagtaaaaa aatgttgcac gcttgtttgc gagttgagaa cttagaagca tctcaaaaat
     6181 tttatgaaga agcatttgga tttaaggaaa cccgtcgcaa ggactatcca gagcacaagt
     6241 ttaccttggt ttacttagca cttgaagggg atgactttga gattgaattg acctacaatt
     6301 atgatcgtgg tccctatatc gtaggcgacg gtttctcaca tctagctctt tcttcagatg
     6361 atttagaagg ggacaatgcg aaacataaga agctgggcta tccaacgaca gacatcaagg
     6421 gcttgccagg aagtccaggt cgttattatt ttgtaacaga tccagatggc taccgtgtgg
     6481 aagtcattcg tgcagattaa tttagaaaag attgcttagg cagtcttttt cttttcaaaa
     6541 aaaatcagaa aatggcagga gggagggaat tggtaaattc tcaaagtaag ttctagttcc
     6601 cgtc
//
LOCUS       DASGAC010000117         6463 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.117, whole genome shotgun sequence.
ACCESSION   DASGAC010000117 DASGAC010000000
VERSION     DASGAC010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6463
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.117"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            136..852
                     /locus_tag="U1335_001629"
     CDS             136..852
                     /locus_tag="U1335_001629"
                     /inference="COORDINATES: protein motif:HMM:NF024109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM5232091.1"
                     /translation="MDSFFTTSDGAGIHYRLCGSGFPIVFLHGNYLSMDYFLNQLELA
                     EHYQLLLIDSREQGQSTQGRKPVSFRQMAEDLEELLQYLKIDSCIIVGHSDGANLALL
                     YSYLYPDRIKGIVANGGNISFDGLSFLTQIGVWLEEKMYSLLAHLIPSLERRARVAQL
                     LLQDVLSFSSLAQISCPCLILLGQWDLIKPSHSQEIVKNLPLAEIKIIRRTGHNPARR
                     KIQEFNHIIIQFVESVRKKR"
     gene            849..3380
                     /gene="mprF"
                     /locus_tag="U1335_001630"
     CDS             849..3380
                     /gene="mprF"
                     /locus_tag="U1335_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional lysylphosphatidylglycerol
                     flippase/synthetase MprF"
                     /protein_id="HEM5232092.1"
                     /translation="MKKVSLFLQRNATKMKSIFFIAVSLLVFVELRRLVRTISWSGVI
                     SSLSQISWFHIFLMVIIGLLAILPMVGYDFIFNRTINSQHSKRYIAETSWAINTMNNL
                     VGFLGIVDVGLRYSFYIEDGKELDGVQQISKVTPYFMTGLSLLSGLSLMLLYFWPNPS
                     SASRYWPILVAIVAYLPVILLISSQKKWAFFGQLPKRTAGQLIFISFLEWSAFFLSFL
                     FVGRLAGYSVPIVDLFPIFIIAHCVGMISMIPGGIGSFDLVLISGLASAGLHSTDAVV
                     WLLLFRLVYYILPFLIGIFIFSKQMGHRLNQRFFGLPEKIASNIVHTAEIWSFRAFGF
                     FFILSALIPEKTTGLIWLNAIDPMRGELIWQLPSIILGLLFIILARFIQRRIHSALSF
                     GILLIAISLIYVNSSGILVGTSLFLCLLLLILIALRKRLMRSYFSYTWEDLTVDISFA
                     SFSFLNFLILGGHSFWKIYPIHHLNPLDHTLQLLGVTFLCVLLAYLIIRLILRCFRGR
                     PVAFGQAFEVERFTNFLKTYGGDSDSGLAFLRDKRLFWYQVEGQDKVAFQFAQLDGKC
                     VVMGEPIGDKNYFPQAIEYFLREAEEQNVDVIFYEIKQETTLLLHDHGYDFLKFGESA
                     TIPLVEFGTEGKSGKKFRTSLNKLENHGYHFDMIYPPYSEETLDRLEYISNQWLGNRQ
                     EKGFSLGFFDRDYLQLAPIALVRGKDDKVLAFATIMPSFQEKVGTIDLMRYDSDTAPN
                     GVMEYLFIRIALYFKEEGKDYFDIGMAPLSNVGTRDHSFWQEKVGYLIYQFTSRFYSF
                     SGLRKYKEKFRPDWEAKYISYPRSTWLAYAMLVLLQIDNRKIKPK"
     gene            3541..4044
                     /locus_tag="U1335_001631"
     CDS             3541..4044
                     /locus_tag="U1335_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEM5232093.1"
                     /translation="MSIKLDQYEKEIIGIAEEISYYLQKSGAGPADSQDIAQDVLVKL
                     LESDIVLPFEKLRAWLYRSAVRAYIDKYRRDKRYHEILQKEFFTPENFLVYDQEDYEE
                     LYQAVADLPEKYQQVIDLYYFQDMSVKEIAHILGAGQSWVKISLYRGRKQLRKALEER
                     GYDYEDF"
     gene            4025..4993
                     /locus_tag="U1335_001632"
     CDS             4025..4993
                     /locus_tag="U1335_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti sigma factor C-terminal domain-containing
                     protein"
                     /protein_id="HEM5232094.1"
                     /translation="MTMKTFEEVTKKSKRKNLWKTVGLSSIVGIVLLLSSIYALRLFS
                     NYRSQQAQEHFNRVLQVTYPNVDVERFYVNEIGIVSGYVDYNLSKDLAGVPFAFGHLE
                     VDYNLYGIFANFGQYFPEGSEEYYYHQDSNSKLPIFYNTKTASGRQELSYTKEMKGQL
                     IEVAITFDKKYTLAEIRNMVPNNLKKNWYWIGTEKSQLRTEYLSLVSLFGMDSEQLQA
                     VTAEVATDDLVPYTSPLTVMKELVDYQGDYALSPEIKGDVQAYVDKFGDTDFTQQAEI
                     DKLEFAGIILTGRAEDFVELENADWIYASSIGASVQNQPYYQLDVE"
     gene            5117..6313
                     /gene="tuf"
                     /locus_tag="U1335_001633"
     CDS             5117..6313
                     /gene="tuf"
                     /locus_tag="U1335_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014335040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEM5232095.1"
                     /translation="MAKEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLARRLPSSV
                     NQPKDYASIDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQM
                     DGAILVVASTDGPMPQTREHILLSRQVGVKHLIVFMNKVDLVDDEELLELVEMEIRDL
                     LSEYDFPGDDLPVIQGSALKALEGDTKYEDIVMELMNTVDEYIPEPERDTDKPLLLPV
                     EDVFSITGRGTVASGRIDRGTVRVNDEIEIVGLQEEKSKAVVTGVEMFRKQLDEGLAG
                     DNVGVLLRGVQRDEIERGQVISKPGSINPHTKFKGEVYILTKEEGGRHTPFFDNYRPQ
                     FYFRTTDVTGSIKLPEGTEMVMPGDNVTIDVELIHPIAVEQGTTFSIREGGRTVGSGM
                     VTEIEA"
BASE COUNT         1864 a         1164 c         1394 g         2041 t
ORIGIN      
        1 aatttttttg gttccttatt aggaaataga tggtatcaga taagcaaaat tgacaaatgg
       61 aggaaatctt cataaaataa gaaaaagtat ctaaaacgat actttgtact atataaaact
      121 aaaagagggg gtgcaatgga cagtttcttt acaacatctg atggtgctgg gatacactat
      181 agactatgtg gttcgggttt tcccatcgtt tttttacatg gtaactatct gtcgatggat
      241 tattttttga atcaattgga gttggcagaa cattatcaat tgctgctcat tgacagtagg
      301 gaacaggggc agtctactca aggtcgaaag cctgtttctt tccgtcagat ggcagaagat
      361 ttagaagagc ttcttcagta cttaaagatt gattcttgta tcattgttgg tcatagtgat
      421 ggcgccaacc tggccctgct gtacagttat ctttacccag atcgtatcaa agggatagtt
      481 gcaaatggtg ggaatatttc ttttgatggt ctttcttttc taacgcaaat tggggtttgg
      541 ctggaggaaa aaatgtattc gctgttggct cacttaattc cgtctttaga gcgcagagcg
      601 cgtgttgctc aactactttt gcaggatgtt ctttctttca gttctcttgc tcagatttct
      661 tgtccgtgtt taattctttt gggtcagtgg gacctgatta agccttctca tagccaagaa
      721 atagtaaaga atttgccatt ggctgagata aaaattatca ggagaacggg tcataatcca
      781 gcaagacgta aaatccaaga gtttaatcac atcatcattc aatttgtaga aagcgtgagg
      841 aaaaaaaggt gaaaaaggtt agtctattct tacagcgaaa tgctacaaaa atgaagtcaa
      901 tattcttcat tgcagtttcg ctactagtat ttgttgaatt gaggagattg gtacgcacca
      961 tttcatggtc tggtgtgatt tctagcctta gtcagattag ttggtttcat atttttctga
     1021 tggttatcat cggactctta gctattcttc ccatggtagg ctatgacttt atcttcaatc
     1081 ggacaatcaa tagtcagcat tcaaaacgat atattgctga aaccagttgg gcaatcaaca
     1141 ccatgaacaa cctagtaggt tttttgggga ttgtggatgt cggcttgcgg tattcgttct
     1201 atattgaaga cggaaaagag ttggatgggg ttcagcaaat cagcaaagtt actccctatt
     1261 ttatgacagg tttgtctctg ttgtcaggtc tttccttgat gttactgtat ttttggccaa
     1321 accctagttc agcttctcgt tattggccaa ttttagtagc gattgtggct tacttaccgg
     1381 ttattttatt gatttccagt caaaaaaaat gggcgttttt tggtcaatta cctaaaagaa
     1441 ctgcagggca actcattttc atttcttttt tggagtggtc tgccttcttt ctttcatttc
     1501 tgtttgtcgg tcggttggct ggttattccg taccaattgt tgatctcttt ccgattttta
     1561 tcattgctca ctgtgtggga atgatttcaa tgattccggg tggaatcgga agctttgatt
     1621 tagtgttgat ttctggtctt gccagtgctg gtttgcattc tacagacgca gttgtctggt
     1681 tgttgctgtt ccgactggtc tattatattc tgccgtttct gattggtatt tttatttttt
     1741 ccaaacagat ggggcatcgt ctcaaccaac gcttctttgg acttccagag aagatagcgt
     1801 ctaatattgt gcataccgct gagatttggt ctttccgtgc ttttggtttt ttcttcatat
     1861 tgtcagcact tattccagaa aagacgactg gtctcatctg gctcaatgcg attgatccga
     1921 tgaggggcga actaatctgg caattgccaa gtattattct aggtttgtta ttcattatcc
     1981 tcgctcggtt tattcaaagg agaattcatt ccgctctttc atttggtatc ttgctcatcg
     2041 cgataagtct gatttatgtc aattcatcag gtatattagt tgggacttcc ttatttcttt
     2101 gtttactgtt acttatcctt atcgcccttc ggaagcgatt aatgcgatcg tactttagtt
     2161 atacgtggga agatttaaca gtagatatta gttttgctag cttttcgttt ctaaactttt
     2221 tgatactggg aggtcattct ttctggaaaa tctatccgat tcatcatctt aatccactag
     2281 atcatacact gcaattattg ggagttacct ttttatgtgt tctattggct tatttaatca
     2341 ttcgtttgat tcttagatgt ttcaggggga gaccagttgc atttggtcaa gcctttgaag
     2401 tggagcgatt tacgaatttt ttaaagactt acggcggaga ttcagatagt ggtctggcct
     2461 ttctgcgaga caagagatta ttttggtatc aggtagaggg acaagataaa gttgcttttc
     2521 agtttgctca attagatggg aaatgtgtcg tcatggggga acctattggg gataaaaact
     2581 acttcccaca agctatagaa tattttctca gagaggctga agagcagaat gtagatgtta
     2641 ttttctatga aataaaacaa gagacaacct tgcttttgca tgatcatgga tatgattttt
     2701 tgaagtttgg agaaagtgcg acaatccctt tggttgaatt tggtacagag ggaaaatcgg
     2761 gtaaaaaatt taggactagc ttgaataaat tggaaaatca tggctaccat tttgacatga
     2821 tttatcctcc atattcggaa gaaacattgg accgtctgga gtatatttcc aatcaatggc
     2881 ttggtaatcg tcaggaaaaa ggtttctcac taggattttt tgatagagac tacttacagt
     2941 tagcgccgat tgctttggta agaggaaagg atgataaagt ccttgcattt gctactatta
     3001 tgccgtcctt tcaggaaaag gttggaacga ttgatctgat gcgctatgat agcgatacag
     3061 ctccaaatgg ggtaatggaa tacttgttta tcaggatagc actctatttc aaagaagagg
     3121 gtaaagatta ttttgatatt ggtatggccc ctttgtcgaa tgtaggaact cgtgaccatt
     3181 cattttggca agaaaaagtg gggtacctca tttatcagtt tacgagtcgc ttttattcct
     3241 ttagtggctt aaggaaatat aaagaaaagt ttagaccgga ctgggaagcg aaatacattt
     3301 cctatccacg gtcgacatgg ttggcttatg ctatgctggt gctgttacag attgataata
     3361 ggaagataaa gccgaagtaa gctgagaatg aaatggtata gtagtaagcc aactcaatag
     3421 attttggctt cctgtcacaa atgatttatt tggctagaat taactagcac aacgggtata
     3481 ataattataa gaaaacgtaa ccaaacacat tttcattcgt tttatcagtg aaaggagggg
     3541 ataagtatca aactagatca atatgaaaaa gaaattattg gtattgcaga ggagatttcc
     3601 tactatttgc aaaaatcagg agccggccca gctgacagtc aggatattgc tcaagatgtt
     3661 ctagtcaaat tgcttgaatc tgatattgtc cttcctttcg aaaaactaag agcttggctt
     3721 taccgttctg cagttcgggc ttacattgac aaatacaggc gagacaagcg ctaccatgaa
     3781 attttacaaa aggagttttt tacacctgaa aattttttgg tctatgacca agaagattat
     3841 gaggaactct atcaagctgt tgcagacctg ccagaaaaat accagcaagt gattgactta
     3901 tactacttcc aagatatgag tgtcaaagag attgcgcata ttttaggtgc tggtcaaagt
     3961 tgggtgaaaa tcagccttta ccgaggacgc aaacagttga ggaaagcact agaagagaga
     4021 ggatatgact atgaagactt ttgaagaagt gacaaaaaag agtaagcgga aaaatttatg
     4081 gaagaccgtt gggcttagta gtatagtggg aattgtttta ctattatcca gtatctatgc
     4141 cctccgtttg ttttctaact atcggagtca gcaggcacag gaacatttta atcgtgtcct
     4201 tcaggtaacc tatccaaatg tagatgtgga acgattctat gttaatgaaa taggaattgt
     4261 ttcaggctat gttgattata atttgtcaaa ggatttggca ggtgtgcctt ttgcatttgg
     4321 gcatctggaa gtagattata acttatatgg aatctttgct aattttggtc agtatttccc
     4381 agagggttct gaagaatatt actaccacca agatagcaac agcaagttac cgatctttta
     4441 caatactaaa acagcttctg gccgtcagga attatcctat actaaggaga tgaaagggca
     4501 gctaatagaa gtggccatta cctttgataa gaaatataca ttagcagaga taaggaacat
     4561 ggtcccaaat aacctcaaaa agaattggta ttggattggg acggaaaaat ctcagctgag
     4621 aacagaatac ttatccctag tcagtctatt cggcatggat tccgaacaac tacaagcagt
     4681 gacagcagaa gtagccacag atgaccttgt tccttataca agccctctta ctgtgatgaa
     4741 agaattggtg gactaccaag gcgattacgc cctctctcct gaaatcaagg gtgatgtaca
     4801 agcttatgtc gacaaattcg gcgacaccga cttcacccag caagcagaga ttgataaatt
     4861 agaattcgca ggcattattc tcacaggcag agcagaagac tttgtagagc tagaaaatgc
     4921 cgactggatc tacgcttcca gcatcggagc cagtgtccaa aatcagccct attatcagct
     4981 agatgtggaa taaatcagaa aaacggtaga aaatgcttgc aattctgcta caatttgata
     5041 gaatagtaag gtaaagttag accgtattgc ctactgtcta tctataaaat atattttatt
     5101 ggaggctttt accaaaatgg caaaagaaaa atacgatcgt agtaaacccc acgttaacat
     5161 tggtacaatt ggacacgttg accacggtaa aactactttg acagcagcta tcacaactgt
     5221 attggcacgt cgcttgcctt catcagttaa ccaacctaaa gactatgcgt ctatcgatgc
     5281 tgctccagaa gagcgcgaac gcggtatcac tatcaacact gcacacgttg agtacgaaac
     5341 tgaaaaacgt cactatgctc acatcgacgc tccaggacac gcggactacg ttaaaaacat
     5401 gatcactggt gctgctcaga tggacggtgc gatccttgta gtagcttcaa ctgacggtcc
     5461 aatgccacaa actcgtgagc acatccttct ttcacgtcag gttggtgtta aacaccttat
     5521 cgtcttcatg aacaaagttg acttggttga cgatgaagaa ttgcttgagt tggttgaaat
     5581 ggaaatccgt gaccttcttt cagaatacga tttcccaggt gatgatcttc cagttatcca
     5641 aggttcagct cttaaagccc ttgaaggtga cactaagtac gaagacatcg ttatggaatt
     5701 gatgaacact gttgatgagt acattccaga accagaacgc gacactgaca aaccattgtt
     5761 gcttccagtt gaggacgtat tctcaatcac tggtcgtggt actgtagctt caggacgtat
     5821 cgaccgtggt actgttcgtg tcaacgacga aatcgaaatc gttggtcttc aagaagaaaa
     5881 atctaaagca gttgttactg gtgttgaaat gttccgtaaa caacttgacg aaggtcttgc
     5941 cggtgataac gttggtgtac ttcttcgtgg tgtacaacgt gatgaaatcg aacgtggtca
     6001 agttatctct aaaccaggtt ctatcaaccc acacactaaa ttcaaaggtg aagtttacat
     6061 ccttactaaa gaagaaggtg gacgtcacac tccattcttc gacaactacc gtccacagtt
     6121 ctacttccgt acaactgacg taactggttc aatcaaattg ccagaaggta ctgaaatggt
     6181 aatgcctggt gataacgtta ctatcgacgt tgaattgatc cacccaatcg ccgttgaaca
     6241 aggtactact ttctctatcc gtgaaggtgg acgtactgtt ggttcaggta tggttacaga
     6301 aatcgaagct taattcgatt gagttcccag aaataacaat tatagtcaga caacttaatt
     6361 gtaactctct actttcgggt agagagtttt tctgtaacaa ttacctagac tatttctagc
     6421 tcctatcaat aacatagtat atatttttgt ttttgtagtt ttc
//
LOCUS       DASGAC010000118         6443 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.118, whole genome shotgun sequence.
ACCESSION   DASGAC010000118 DASGAC010000000
VERSION     DASGAC010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6443
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.118"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(110..715)
                     /locus_tag="U1335_001634"
     CDS             complement(110..715)
                     /locus_tag="U1335_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000974722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEM5232096.1"
                     /translation="MAIILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALE
                     KHPEIGEDLVALLSDVEQIPADIRQALINNGGGHLNHALFWELLSPEKTEISAELAAD
                     IDATFGSFDAFKEAFTTAATTRFGSGWAFLVVNKEGKLEVISTANQDTPIMQGLKPIL
                     ALDVWEHAYYLNYRNVRPNYIKAFFEVINWDKVNELYKAAK"
     gene            complement(807..1838)
                     /locus_tag="U1335_001635"
     CDS             complement(807..1838)
                     /locus_tag="U1335_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEM5232097.1"
                     /translation="MLVIEQIEKLKKEKLELLTVLCGEDIGQYQIAKDLLLRKLDFDA
                     ADLGFAYFDMSEADYSQVDLDLVSLPFFSDEKVVILDYFSDLTTDKKRHLTDDELKQF
                     EAYLENPVETTRLIILAPGKLDSKRRLVKLLKRDGLVLEANPLKEMDLKNHFQKEIMR
                     LGLQIGGEVFQYLLEKSNFDFAEISKNLAFLQSYKGKETIEISDIDAAIPKTLQDNIF
                     DLTQLILQSKVDEARNLVRDLRLQGEEEVKLIAIMLTQFRTYLQVQILVEQGRGEQQI
                     VAELSTIMGRKVNPYQVKYALRDSRYLSIGFLKKVVRLLIETDYQIKTGQFDKDYLFD
                     LTLLKIATS"
     gene            1984..>6443
                     /locus_tag="U1335_001636"
     CDS             1984..>6443
                     /locus_tag="U1335_001636"
                     /inference="COORDINATES: protein
                     motif:HMM:NF019142.1,HMM:NF019216.1,HMM:NF037372.1,
                     HMM:TIGR01168.1"
                     /note="The YSIRK form of extended signal peptide directs
                     nascent proteins to the cross-wall site, while signal
                     peptides lacking YSIRK direct proteins instead to the cell
                     pole. A large fraction of YSIRK proteins are surface
                     proteins anchored by sortase-mediated processing of a
                     C-terminal LPXTG motif; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HEM5232098.1"
                     /translation="MERKQRFSIKKLSIGVVSICIGFAFLTQGNSTVAAAENSVEVII
                     SNATGEEETIPTQPTETPNNRESIQNTETTTQEEVTVNNTVEGQTDTEKSTRTEQAVP
                     ESTTSQNDHLANTEDTTTTSSSTESSVNEVEFPTETTALSSPESSPKIETIDASLKAE
                     QPNTSEGTTALRAATNTSPTTTVTGNDTAIQAIENGSITPSKTIASLNAEEKQTLNNL
                     ILTNFETSADKVALLDVVKPKESLSISDLTKYFVPLIKQLKSDPNYKHLTDQERSAEA
                     TKLALIEANKNLYEDASIEALAPEAKKTFQQLLEYNNGQLLKDKNGLTVETIKNNLSQ
                     LYRGVLYLQQQYSFESDLPETLVFAPHTIGQIQADQTSAYDRLLAYGGRITDKRSLAL
                     NLNQNQFKERLISQYTGTNSTAELVEKIAQSKGKDVNSYFTEQSQALIGTSPNISIFD
                     LLKTHKPEYILPVLSQGKGIYLAGTSNSLTIGLLDSYTDLYPQLKNFSKERGAQQPIS
                     TFFDKLLTYQENWLTFLNSAKTADATIPFTLAVDTLKVYNEATKTHTWSPNEGESAHT
                     AVVSFFSPMNLWENYVRSGIGLGGIAQGESLIRAYETRFMHSNLSGIALFTHEMTHTN
                     DDARLFRGAGRRNGQGPEVYARGLFEVIDNTQNGVPGEYKPVFNLNTALTIADSPNRT
                     QALTPQTSTEELANYTKNLVDLIAYLEAVEARVALKTLSEEELAIYFNKVIQVPRNLT
                     SNTGTTNTDLPSTNDAFLPFGYLTAAPLTKPSSINDLVDQDAVSGRFIPRGSSPLILE
                     LSHNQYDHVPLLDSFYGVSDAPNGNNTVGDISFKRHAYEILAWKGWDAFISYISNRYN
                     SDSEAFKAILGNEYSDWASFKKAQYKRLEDKEPVNQLWQTSQLEKELETAIKADLAVL
                     TTYRNSINSLLNSRSTVTQTQLDQAAQKASVARLATNVRKVKLDILNKALQFNNLEAS
                     IFEAPKQSDIIYVKNGGNGQGLTEDTPMGSLAEALQKATDGTIIKLVGNATERTPLVI
                     NKAVTIESDSSENAIIFNESIQISNNVTLRNLSIHALTESNVPGNIYIDGQVTMDHVS
                     TLISNRQTDKRPSLIIGSSADTTDKRESSLKILNTNETVFDKMTVQNAADIAIANGTQ
                     IKNGVEVTTPSPVTITSESNQVNKFQAPETNQVTLIFNNSKASNVELKNISNLIVKNN
                     SFISLNSQSLNPIQQALTVETGSQINLGDLEARFQSLKGDGILGFTDKGQLALQDLDG
                     QATIQFKRKDMNFSESDGKTFVTIASKQSGLSVKLIPLDEILKMDKDGNYIYHQPYSA
                     GYYFESVELDKILPSEVEDLLPEDKESPNQAIPQPEAITEIVVDGDGRWVFDRWELDS
                     NSTTKRQFYTGYWRYTTSPQTTVRFEDVPFTTIYQADENRTAGEKETISSGKLGKAKI
                     TETEGSEPVREVLEKPQNEIVAVGTKPVVVSNILKYKTTTVEDPELPKGHT"
BASE COUNT         2151 a         1351 c         1163 g         1778 t
ORIGIN      
        1 cagatttgga gtgtaaaaca cgaacaaatc tgccaatcaa ccactgcgct aagatgttga
       61 cactaacgtt gagaagcggt gctgggcttt tttcccagcc tcactgttct tatttagctg
      121 ctttataaag ttcgttaacc ttgtcccagt taatcacttc aaagaaggct ttgatgtagt
      181 ttggacggac gttacggtag ttgaggtaat aagcatgttc ccaaacatcc aatgccaaga
      241 ttggtttcaa accttgcatg attggtgtgt cttggttagc tgttgagata acctctaact
      301 tgccttcttt gttgacaacc aagaaagccc aacctgaacc gaagcgagtt gttgctgcag
      361 ttgtaaaggc ttctttgaag gcatcaaatg aaccgaaagt cgcatcaata tctgctgcta
      421 attcagctga aatttctgtt ttttcaggtg aaagtaattc ccagaaaagt gcatgattaa
      481 ggtgaccgcc accgttgttg ataagggctt gacggatatc agctggaatt tgctccacat
      541 ctgacaaaag tgctaccaag tcttcaccga tttctgggtg tttttcaagg gctgcattag
      601 catttgcaac ataagttgca tggtgcttgt catggtgcag ggtcattgtt tctgcatcaa
      661 tatgtggttc caaggcatcg tatgcgtatg gaaggtctgg taaaataatt gccattttcg
      721 ttttctccta tactaagtga tagttctatt ctactccaat gtgagagcct tttcaatttt
      781 tttgtctgaa aatactaatc agacacttaa ctcgttgcaa tttttaacaa tgtaagatca
      841 aacaagtaat ccttatcaaa ctgtcctgtc ttgatttgat aatccgtttc tatcaataat
      901 cgaacaactt ttttcaaaaa tccaatggat aaatagcgtg aatcgcgcaa agcatacttt
      961 acttggtatg gattcacctt acgccccata atagttgata actcagctac tatctgctgt
     1021 tctcctcggc cttgctctac taggatttgc acttgtagat aggttcgaaa ttgggttaac
     1081 atgatggcaa tcaacttaac ctcttcctcc ccttgcaacc gcaagtcacg aactaagttg
     1141 cgagcctcgt ctaccttgga ttgtagaatt aactgtgtta aatcaaagat attatcctgt
     1201 agtgttttgg ggatagccgc atcaatatct gaaatttcaa tcgtctcttt tcccttataa
     1261 gattgaagaa aagctaggtt cttactgatt tctgcaaaat caaaattgga cttttctaaa
     1321 agatattgaa aaacctctcc tcctatctgc aatccaagac gcattatctc cttttggaaa
     1381 tgatttttca aatccatctc cttcagagga tttgcttcta atactagtcc atctcgcttg
     1441 aggagtttaa ccaggcgtcg tttgctatct aactttcctg gagctaggat aatcaaacgt
     1501 gttgtttcaa ctggattttc caaataagcc tcaaactgtt taagctcatc gtccgtcaaa
     1561 tgccgcttct tgtctgtggt caaatcagaa aaataatcca gtatgacaac tttttcgtct
     1621 gaaaaaaatg ggagagaaac caaatccaaa tccacctgac tataatcagc ttctgacata
     1681 tcaaaatagg caaaacctaa atctgccgca tcaaaatcaa gcttccgaag aagtaagtct
     1741 ttcgctattt ggtattgtcc gatgtcttca ccgcataaaa cggtcagaag ctctagtttc
     1801 tcttttttta atttttcaat ctgttcaata actaacatgt atacctcata ttctgttttc
     1861 attttaccac aaaagcaatg aggctggcaa agtgtctaac aaaatcaatt actatactac
     1921 ttgcgaaaac gcttaatttc tgttatattc tagataacta catgaactag aaaaggggaa
     1981 aatatggaac ggaaacaaag attttctata aaaaaattat caatcggtgt tgtgtccatt
     2041 tgtatcggat ttgcatttct tactcaagga aacagtactg tagcagccgc tgaaaatagt
     2101 gttgaagtta ttattagcaa cgcaacaggc gaagaggaaa caatccctac tcaacctacg
     2161 gaaactccta acaatagaga gagcattcaa aatacggaaa ctactactca agaagaagtc
     2221 accgtgaata atacggtcga gggacaaact gataccgaaa aaagcacccg tacggaacaa
     2281 gcggtacctg aatctaccac tagtcagaat gaccaccttg caaataccga agacaccact
     2341 acaacttcat cttcaacaga gagctcagta aatgaagtag agttcccaac ggaaactact
     2401 gctctttcct cccctgaatc atcccctaaa atagaaacta tcgatgccag tttaaaagca
     2461 gagcaaccta acacaagcga aggaacaaca gctcttcgtg ccgcaaccaa tacaagcccc
     2521 acaactactg tgactggaaa tgatactgct atccaagcaa ttgaaaatgg aagcatcact
     2581 ccgtctaaaa cgatagcatc tctaaacgct gaagagaaac aaactcttaa caaccttatt
     2641 ctcacaaact ttgaaactag cgctgataaa gtagctttac tagatgttgt aaaacctaaa
     2701 gagagtttaa gtatttctga tttaacaaaa tattttgttc cgcttataaa acaactaaag
     2761 tcggatccta attacaagca cttgactgac caagaaaggt ccgctgaagc aacaaaatta
     2821 gcgctgattg aagcaaacaa aaacctctac gaagatgcga gtattgaagc cctggcacct
     2881 gaagccaaaa aaacattcca acaacttctt gaatataaca acggccagtt acttaaagac
     2941 aagaatggat tgactgtcga aaccatcaaa aacaacctaa gccaactcta ccgtggtgtc
     3001 ctttatctcc agcaacaata ttcttttgaa agtgacttac cagaaacgct agtctttgcc
     3061 ccacatacaa ttggccaaat tcaagcagac cagacaagtg cctatgatcg cttgttagct
     3121 tatggtgggc gtattacaga taaacgatcg cttgctttaa atctcaatca gaatcagttc
     3181 aaggaacgcc taattagcca atataccggt actaattcta ctgctgaatt ggttgaaaaa
     3241 attgctcaat caaaaggtaa agatgtcaat agttacttta cagaacagtc ccaagccttg
     3301 attggaacaa gcccaaacat ctccatcttt gacttattaa aaacccataa accggaatat
     3361 atcctccctg tcctctctca aggtaaaggt atttacctag caggtactag caatagcttg
     3421 acaattgggc ttttggattc ctatacagat ctctatcctc agttgaaaaa cttcagcaag
     3481 gaaagaggag ctcaacaacc gatatccact ttctttgaca agctccttac ctatcaagaa
     3541 aattggttaa ccttccttaa ttctgcaaaa actgcagatg caacgatacc atttacatta
     3601 gcagttgata cgctgaaagt atataacgag gcaaccaaaa cacatacttg gtcaccaaac
     3661 gaaggagaat cagctcatac tgctgtagtc tccttcttct cgccaatgaa tctttgggaa
     3721 aattatgttc gttcaggtat tggattagga ggtattgcac agggagagag cttaatcaga
     3781 gcctatgaaa cacgttttat gcatagcaac ctatctggta ttgctctgtt tacacatgag
     3841 atgacccaca caaatgacga cgctagacta tttagaggtg ccggtcgtcg gaatggtcaa
     3901 ggacctgaag tttatgcaag aggtttattt gaagtcatcg ataacacaca aaacggtgtc
     3961 cctggtgagt acaaacctgt ctttaattta aacacagctc tcacgattgc tgacagtcca
     4021 aatcgtactc aagcattgac acctcaaact tctacagaag agttggccaa ttataccaaa
     4081 aacctggtcg atttaattgc ctatttagaa gcagtcgaag ctagggttgc cttaaaaact
     4141 ctatcagaag aagaattagc tatctacttc aataaagtca tccaagtacc tcgtaatctg
     4201 acttctaaca ctggaacgac aaacaccgac ctcccttcta ccaatgatgc ctttctcccg
     4261 tttgggtatt taacagctgc tccacttact aaacctagca gtatcaatga tttagttgac
     4321 caagatgctg tcagcggtcg ttttataccg agaggtagtt caccactcat actcgaatta
     4381 agccataatc agtatgacca cgttccacta ttggatagtt tttacggtgt ttcagatgct
     4441 ccaaatggca ataataccgt tggagatatc tctttcaagc gacatgcata tgaaatattg
     4501 gcatggaaag gctgggatgc ctttataagt tacattagta acagatacaa tagcgactca
     4561 gaagctttta aagcaatctt aggaaacgaa tattcagatt gggctagttt caaaaaagcg
     4621 caatataaac ggttagaaga taaggaaccg gttaatcaat tgtggcaaac tagccaattg
     4681 gagaaagagt tagaaacagc tataaaagct gatttagcag tattaaccac ctatcgaaat
     4741 tcaattaaca gtctacttaa cagtcgttcc actgttactc aaacgcagtt agaccaagca
     4801 gctcaaaaag cttcagttgc tcggttagca actaatgtcc gtaaagttaa attagatatt
     4861 ctaaacaaag ctctacagtt taacaatcta gaagctagta tctttgaagc accaaaacaa
     4921 tctgacatta tctatgtaaa aaatggcgga aacggacaag gactgacaga agatacccct
     4981 atgggaagtt tggctgaagc cttgcagaaa gctacagatg gtactatcat caaactggtc
     5041 ggcaatgcca ccgagcgaac tccactcgtc atcaataaag cagttaccat tgagagtgat
     5101 agcagtgaaa atgcgattat ttttaatgag agtattcaaa tttcaaataa cgttacccta
     5161 cgtaatttaa gtattcatgc tttaacagaa agcaatgtcc ctggaaacat ctacatagat
     5221 ggtcaagtga caatggatca tgtatccact cttatatcca atcgtcaaac tgataaacgc
     5281 cctagtctta tcataggttc atcagcagat acaactgata agcgtgaatc cagtttgaaa
     5341 attttaaata caaatgaaac tgttttcgat aagatgaccg tccaaaatgc cgcagatatt
     5401 gcgattgcaa atggtacaca aattaaaaac ggtgtcgaag tgactacacc ttctcctgtt
     5461 acaatcactt ccgaaagtaa tcaggtcaat aaattccaag cacctgaaac caatcaggta
     5521 acccttattt ttaataatag caaagcaagt aatgtagagt taaaaaacat ctcaaatctc
     5581 atagtaaaaa acaattcctt tatctcccta aatagccaat cactcaatcc aatccaacag
     5641 gcattaacag tagaaactgg tagccaaata aatttgggag atttagaagc tcgtttccaa
     5701 tcacttaaag gagatggaat attaggattc acagataagg gacaattagc cttacaagat
     5761 ttagacggac aagcgactat ccagtttaaa cgcaaagata tgaatttctc tgaatcagac
     5821 ggtaagacat ttgtcactat tgcttctaaa caaagtggcc tttcagtcaa gctaataccg
     5881 ctggatgaaa tacttaaaat ggacaaagac ggaaattaca tctatcatca gccttactca
     5941 gcaggatatt attttgaatc cgtagaactt gataagatat tgccaagtga agtcgaagat
     6001 ttattgccag aagataagga aagtcctaat caagcgattc cacaaccaga agcgattact
     6061 gaaatagttg tagatgggga tggaagatgg gtctttgaca gatgggaatt ggattctaat
     6121 agtactacaa aacgacaatt ctataccggt tactggcgct atacgacttc ccctcaaaca
     6181 accgttcgtt ttgaagatgt tccatttaca actatctatc aagccgatga aaacagaacg
     6241 gctggggaaa aagaaactat ctctagcgga aaacttggaa aggcaaaaat tactgagaca
     6301 gaaggttctg agccagtaag agaagtcctt gaaaaaccac aaaacgaaat tgtcgctgtc
     6361 ggtacaaaac cagttgttgt aagcaacatc ttgaaataca agacaactac cgtagaagac
     6421 cctgaattgc caaaaggaca cac
//
LOCUS       DASGAC010000119         6334 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.119, whole genome shotgun sequence.
ACCESSION   DASGAC010000119 DASGAC010000000
VERSION     DASGAC010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6334)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6334)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6334
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.119"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(32..1246)
                     /locus_tag="U1335_001637"
     CDS             complement(32..1246)
                     /locus_tag="U1335_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM5232099.1"
                     /translation="MKQFNKSTKLDDVAYDIRGPVLEEAMRMRANGEQILRLNTGNPA
                     EFGFTAPDEVIRDLIHNARKSEGYSNSKGIFSARKAIMQYCQLKKFPNVDIEDIYLGN
                     GVSELIVMSMQGLLDNGDEVLVPMPDYPLWTAAVSLAGGKAVHYVCDEAAEWYPDLAD
                     MESKVTSRTKAIVLINPNNPTGALYPKEILEGIIDIARRHELIIFSDEIYDRMVFDGA
                     VHIPIATLAPDLFVVTMNGLSKSHRICGFRVGWMVLSGPKKHVKGYIEGLNMLSNMRL
                     CSNVLAQQVVQTSLGGYQSVDELLMPGGRLYEQREFITKAINDIPGLSAVKPKAGLYV
                     FPKIDREMYRVEDDEQFVLDFLKQEKVLLVHGRGFNWKDPDHFRIVYLPRVDELAEIQ
                     EKMSRFLRQYRR"
     gene            1401..1853
                     /locus_tag="U1335_001638"
     CDS             1401..1853
                     /locus_tag="U1335_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEM5232100.1"
                     /translation="MTQSYKTILVAVDGSKGAELALHKAIHVALRNQARLIIAHVIDT
                     RALHNVVAFDASVYESLERDAELLLEEYKQEALNAGLTDVQIRIEFGNPKTLLAIDIP
                     KETGADLMLLGATGLNAFERLLIGSSSEYIMRHATIDLLIVRDGEKSL"
     gene            complement(1869..2387)
                     /locus_tag="U1335_001639"
     CDS             complement(1869..2387)
                     /locus_tag="U1335_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5232101.1"
                     /translation="MFQSKDDNFNRVKDFHFLMDGETQELPSVYDGQTALHRAGFKLE
                     ELVEFLHAASESEVEFHDFIQQLHQDLDTAVAKVSGKRGFGVSMQDQVDALLDILYFT
                     YGSFVLMGVDPEPIFQIVHTANMGKTFPDGKAHFDPITHKILKPDDWEERFAPEEKIQ
                     EELKRQMKRLDS"
     gene            complement(2389..3234)
                     /locus_tag="U1335_001640"
     CDS             complement(2389..3234)
                     /locus_tag="U1335_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM5232102.1"
                     /translation="MTIKAVFFDIDGTLLTDNRMVSSSTILAINALKEKGILVGLATG
                     RDPRFVLQYMASLGLDLAIAYNGQYIFSRAEVIYSQSLEPKQIEQIMEYAQTHHKDLS
                     FGTAKGIFGSKIMSAGTGNFAYRVTRMIPESWAGVINFIFNRLVRWISPQQETNLKGF
                     LFQPIYQLMLLTTERETQSLEMLFPNLSFTRSSPYATDIISKGNSKLSGIVKVADRYG
                     FELDEVMVFGDSNNDFEMLNEIQHSVAMGNGTKKVKQAASFVTDTNNRDGIYKALIHF
                     GVIEG"
     gene            3304..4263
                     /locus_tag="U1335_001641"
     CDS             3304..4263
                     /locus_tag="U1335_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HEM5232103.1"
                     /translation="MKKILVLHTGGTISMQANHQGEVASSKINPMTQIDSPLEEIQVT
                     SLDFLNVPSPHIRLEHMMTLYQKIKEEQMNFDGFVITHGTDTLEETAYFLDTMAIPEK
                     PIVLTGAMRSSNELGSDGIYNYRTALRVVADDKSADKGVLVVMNDEIHAAKYVTKTHT
                     TNVSTFQTPTHGPLGLVTKREILYFKTAEPRVRFDLSTVTGTVPIIKDYADMDSILLD
                     SLTASSISGLVIEALGAGNLPPTILPAIKKLLDQKIPIILVSRCFNGIAEPVYAYQGG
                     GIQLEQDGILFVKELNAQKARLKLLIALNAGLEEQSLADYIQG"
     gene            complement(4327..>6334)
                     /gene="recG"
                     /locus_tag="U1335_001642"
     CDS             complement(4327..>6334)
                     /gene="recG"
                     /locus_tag="U1335_001642"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019805675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEM5232104.1"
                     /translation="CDELSVLPGIGPKSAEKFLKINIQNINDLLTYYPFRYEDFESKS
                     IYDLQDGEKAVVVGEVVSPANVQYYGYKRNRLRFSMKQGEVVLAVSFFNQPYLADKIV
                     LGQDIAVWGKWDKAKASLTGMKILAQVSDELQPVYHVAQGISQVNLVKAIKTAIDQGY
                     LHLLEENLPSVLRERYGLMNRREAVFAMHFPTNLEEYRQALRRMKFEELFYFQLQLQM
                     LKANNRDISNGLKIAYDADRLAMQIRQLPFVLTDAQSGALAEILSDMKSYGHMNRLLQ
                     GDVGSGKTVVAGLAMFAAVTAGMQAAIMVPTEILAEQHFESLRQLFPELSIALLTGGM
                     KAAERRTALEAISSGQVDIIVGTHALIQESVTYHKLGLVVTDEQHRFGVKQRRLFREK
                     GDNPDVLMMTATPIPRTLAITAFGDMDVSIINQLPAGRKPIITRWVKHQQLPTVLDWL
                     ERELEVGAQVYFISPLIEESEALDLKNAVDLQSDLQAYFGEQVPVDLLHGKMKNDEKD
                     AIMQAFKERKTNILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQLRGRVGRGHKQ
                     SYAVLVANPKTESGKERMKIMTETTDGFILAEADLKMRGSGEIFGTRQSGLPEFQVAN
                     IIEDYPILEEARRVASQIVSVENWQEDTNWSILLANLKDREELD"
BASE COUNT         2012 a         1554 c         1004 g         1764 t
ORIGIN      
        1 tcaagtaaaa agaaaaggct gaaaaaatcc attatctacg atattgccgc aaaaatcgtg
       61 acattttttc ttgaatttct gccaactcat ccacacgtgg taaatacaca atacggaaat
      121 gatctggatc cttccagtta aaacctcgac catggaccaa aagtactttt tcttgcttga
      181 ggaaatccaa tacaaattgt tcatcatcct caactcggta catctcacga tcaatttttg
      241 ggaagacata cagaccagcc ttaggtttta cagcagaaag tcccggaata tcattaatcg
      301 ccttggtaat gaactccctt tgttcatata agcgtccgcc aggcatcaag agttcatcaa
      361 ccgattggta gcctcccaaa gaagtttgaa caacctgttg agccaaaacg tttgaacaca
      421 aacgcatatt ggacaacata ttcaagcctt caatgtaacc ttttacatgc tttttcggac
      481 cagataagac catccaacct actcggaaac cacaaatacg atgcgattta gacagtccat
      541 tcatcgtcac aacaaataaa tctggagcca gtgtcgcaat agggatatga acagctccgt
      601 caaagaccat acgatcataa atctcatcag agaaaatgat caattcatgt ctacgagcaa
      661 tatcaatgat tccttctaaa atttctttcg gatagagagc accagttgga ttatttggat
      721 tgataaggac aattgctttg gttcgagaag tcaccttgga ctccatatct gccaaatctg
      781 gataccattc agctgcttca tcacaaacat agtgaacagc tttaccacca gccaaactaa
      841 ctgcggcagt ccagagagga tagtctggca ttggcaccaa cacctcatca ccattatcta
      901 gcaaaccttg catagacata acaatcagct cactcacgcc gtttccaaga taaatatctt
      961 caatgtcaac atttggaaat ttctttagct gacaatactg catgatagcc ttacgtgcag
     1021 aaaaaattcc cttactgttt gaatatccct ctgatttacg ggcgttatga atcaagtcac
     1081 gaataacttc atctggagca gtaaaaccaa attctgcagg attccccgta ttcaaacgta
     1141 aaatctgctc tccattggca cgcatacgca tggcctcttc caaaacaggc ccacgaatat
     1201 catatgctac atcatccaat tttgttgact tgttaaattg cttcatgtcg tcacctcgac
     1261 tttctatcgt ttctattgta ctgtaaaagc taaaaaagta caagaatcct ttacattttc
     1321 tctcaaaagg cttataataa aaatgtaagg aactactcta cctatttcgg gacaaagctc
     1381 ttctgaaagg agttattatt atgacacaat cttacaaaac catactcgtc gctgtagacg
     1441 gctctaaagg agcagaatta gctcttcata aagccattca tgtcgcacta cgcaaccaag
     1501 cacgtctgat tatcgcccat gtgattgaca cccgtgctct ccacaatgtt gttgcatttg
     1561 acgcctctgt ctatgaatct ttagaaagag atgcggagct cctcctcgaa gaatacaaac
     1621 aagaagccct caacgctggt ctgaccgatg tacagattcg cattgaattc ggtaacccta
     1681 aaaccctact ggctatcgat attccaaagg aaaccggtgc tgatcttatg ttacttggag
     1741 caactggtct aaatgccttt gaacgtctcc tgatcggatc ctcatccgaa tatatcatgc
     1801 gccacgcaac tatcgattta ctcattgttc gcgatggaga aaaaagttta taaaccaaaa
     1861 gacttgattt acgaatcaag tcttttcatc tgtcttttca gctcttcctg aatcttttcc
     1921 tccggcgcaa accgttcttc ccaatcatca ggttttaaaa ttttatgggt aattggatca
     1981 aaatgggcct tcccatctgg aaatgttttc cccatattcg cagtatggac tatctgaaaa
     2041 attggttctg gatcaacccc catcaaaaca aacgaaccat atgtaaaata aagaatatcc
     2101 agcaaagcat ctacctgatc ctgcatcgaa accccgaaac ctctcttgcc agatacctta
     2161 gcaacagcag tatctaaatc ctgatgaagt tgttgaataa aatcatgaaa ctcaacttca
     2221 gattctgaag ctgcatgtag aaattctacc aactcctcca atttaaaacc agcgcgatgc
     2281 aaagccgtct gtccatcata cacactggga agttcttggg tttcaccatc cattaaaaaa
     2341 tgaaaatcct ttaccctatt aaaattatcg tccttgctct gaaacatctt atccctcaat
     2401 cacaccaaaa tgaattaatg ccttataaat cccatcacga ttatttgtat ccgtaacaaa
     2461 ggaagctgct tgttttacct ttttcgtccc atttcccatc gctaccgagt gctgaatttc
     2521 attcaacatt tcaaaatcat tattagaatc cccgaatacc ataacttcat ctaactcaaa
     2581 accataccga tctgcaacct ttacaatacc cgataatttt gaatttccct tactgataat
     2641 atcagtcgca tagggactcg aacgcgtaaa agacaagttc ggaaagagca tctccaatga
     2701 ttgcgtctcc ctttccgtcg tcagcaacat cagctgatag attggttgaa agagaaaacc
     2761 ttttaaattc gtttcctgtt gaggactaat ccaacgtacc aaacgattga aaataaaatt
     2821 tatgactcca gcccaggact ccggaatcat acgcgtcaca cgataggcaa aatttcctgt
     2881 tccagcactc ataatcttac taccaaatat gcctttagca gttccaaaag ataaatcctt
     2941 atggtgagtt tgcgcatact ccataatttg ttcaatttgc tttggctcta aactctgact
     3001 ataaataact tctgctcttg aaaaaatata ttgaccatta taagcaatgg ccaaatctag
     3061 ccctaaacta gccatatact gcaaaacaaa acgagggtca cgtcctgtag ctaaaccaac
     3121 taaaatcccc ttctctttca aagcattaat ggcaagaata gttgaactac taaccatacg
     3181 attgtcggtc aataaggtac catcaatatc gaaaaataca gcctttatcg tcaaccaact
     3241 cacctacttt ctaagaatta tgttacaatt agtatatcac actttgaaag aaactgaaaa
     3301 tttatgaaaa aaattctagt actgcataca ggtggaacca tttctatgca agccaatcat
     3361 cagggtgaag ttgcatcgag taaaatcaat ccaatgaccc aaattgatag cccactagaa
     3421 gaaattcaag tgacatcctt ggattttctc aatgttccaa gtccacacat tcgcttagaa
     3481 cacatgatga ctctatacca aaaaattaaa gaagaacaaa tgaacttcga tggttttgtc
     3541 attacacatg gcacagatac tctagaagaa actgcctatt tccttgatac aatggctatt
     3601 ccagaaaaac caattgtatt gaccggagcc atgcgttcct caaatgaact aggtagcgac
     3661 gggatttata actaccgaac agccctacgt gtggttgctg atgataaatc cgcagataaa
     3721 ggtgttctag tggtcatgaa cgatgaaatt catgctgcta aatatgttac aaaaacgcat
     3781 accaccaatg tctcaacctt tcaaacacca acccatggac cactgggatt agtcaccaaa
     3841 cgagagattc tctattttaa aactgctgaa ccacgtgttc gatttgactt atcaacagtc
     3901 acaggaacgg tcccaatcat aaaagattat gcagatatgg actccattct ccttgattct
     3961 ctcactgcaa gctcaatttc cggtttagtc attgaagcac tcggcgccgg aaatcttccg
     4021 cctaccatcc ttccagccat taagaaactc cttgatcaaa agatacccat tattctggta
     4081 tctcgctgtt ttaacggaat tgctgagcct gtctatgcct accaaggagg tggcatccaa
     4141 ctggagcaag acggcattct atttgttaaa gaattgaatg ctcaaaaagc ccgactcaaa
     4201 ctccttatcg ctctcaatgc aggcttggaa gagcaaagct tggcagatta catccaaggt
     4261 taatcgctga cgaactattc aatatgtcaa aagaccaaca catgtgtgtt ggcctttttt
     4321 atatgactag tccaattcct ctcgatcttt caaattagca agcaaaatcg accaattagt
     4381 gtcctcctgc caattttcca cgctaacaat ctgactagca actcgtcttg cttcctctaa
     4441 aattggatag tcctcgataa tatttgcaac ctgaaattct ggcaaacctg attgacgagt
     4501 tccaaatatt tctccagacc cacgcatttt taagtctgct tcagccaaaa taaaaccatc
     4561 tgtcgtctct gtcataattt tcatgcgttc cttaccagac tctgttttag gattagcaac
     4621 taacactgca taagactgct tatgaccacg tcctacacgc cctctcaact gatgtaattg
     4681 gcttaaacca aaacgatctg catccataat aaccatcacc gttgcattgg gcacattgac
     4741 tccgacttca ataacagtgg tagaaaccaa aatattcgtt tttcgctcct taaaagcctg
     4801 catgatggca tctttctcgt cattcttcat cttaccgtgt aacaaatcca ctggaacttg
     4861 ctctccaaaa tacgcctgta aatcagattg cagatctaca gcattcttta aatctagagc
     4921 ctcagattct tcaatcagcg gagagataaa ataaacctga gcacccactt ctaactcccg
     4981 ctccaaccaa tctaagaccg tgggcagctg ttgatgtttg acccagcgag tgataattgg
     5041 ctttcgacca gcaggcaact gattaataat cgatacatcc atatctccaa aagctgtaat
     5101 ggctaacgtc cgaggaatag gtgtagcagt catcataagc acatccggat tatcaccctt
     5161 ctcacgaaac agacggcgct gtttaacacc aaaacgatgt tgctcatccg tcacaaccaa
     5221 accaagctta tggtacgtca cactttcctg gataagagcg tgagttccta caatgatgtc
     5281 tacctgacca ctagaaatcg cctctaaagc agtacgacgc tccgcagctt tcattccacc
     5341 tgtcaaaaga gcaatagaaa gttctggaaa aagctggcgc aaactctcaa agtgttgctc
     5401 agccaaaatt tctgtcggca ccataattgc agcctgcatc cccgcagtca cagcagcaaa
     5461 catagccaat ccagcaacta ctgtcttccc tgaaccaaca tccccttgta acaaacgatt
     5521 catgtgccca taggacttca tatctgatag tatttcagcc aaagccccag actgagcatc
     5581 tgttaagaca aacggcaatt gtcttatttg catagccaat ctatcagcat cataggcaat
     5641 cttcaaacca ttcgaaatat cacgattgtt ggctttcagc atttgcaact gtaattgaaa
     5701 ataaaataat tcctcaaact tcatacgtcg caaagcttgt ctatactctt ctaaatttgt
     5761 aggaaaatgc atcgcaaaaa ccgcctctcg gcgattcatt aacccatagc gctctcgtaa
     5821 aactgatggc aagttctcct ctaataaatg caaatatccc tgatcaatag ctgttttaat
     5881 agccttaacc aaatttactt gcgaaatccc ttgcgccaca tgatagacag gttggagctc
     5941 atctgatact tgagccaaaa ttttcattcc tgtcaaactt gccttagcct tatcccactt
     6001 tccccaaact gcaatatcct gccccaaaac aatcttatct gctaaataag gctgattaaa
     6061 aaaagaaact gctaagacaa cctcaccctg tttcattgaa aaacggagtc tatttctttt
     6121 gtaaccataa tactgtacat tagctggaga taccacctcc ccaactacca ctgccttctc
     6181 cccatcctgc aaatcataaa tagacttact ctcaaaatct tcatatctaa atggatagta
     6241 agtcagcaaa tcattaatat tctgaatgtt aatttttaag aatttttcag ccgatttagg
     6301 accaatccca ggcaaaaccg ataattcatc acat
//
LOCUS       DASGAC010000120         6298 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.120, whole genome shotgun sequence.
ACCESSION   DASGAC010000120 DASGAC010000000
VERSION     DASGAC010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6298
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.120"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            169..444
                     /locus_tag="U1335_001643"
     CDS             169..444
                     /locus_tag="U1335_001643"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232105.1"
                     /translation="MNSEELTKFLLDKTEEDLGLIYRFGLEEGCTDKEKVAFVRGRVR
                     GYCSAVFALLLKLRSSQDDVKISNAIHELIQLRSHAEKQIEEYVSNK"
     gene            complement(514..840)
                     /locus_tag="U1335_001644"
     CDS             complement(514..840)
                     /locus_tag="U1335_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003013607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5232106.1"
                     /translation="MTNNLQKFIAKRIKTLRLQAGLTQTELEARAELGFNYINKLETK
                     ESNITINTLHKIIDALEVDVPTFFDMQISKDENMDELIMMLTELPKGKRNDVIQAVSQ
                     LIKTLK"
     gene            968..4198
                     /locus_tag="U1335_001645"
     CDS             968..4198
                     /locus_tag="U1335_001645"
                     /inference="COORDINATES: protein motif:HMM:TIGR04320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEC10/PgrA surface exclusion domain-containing
                     protein"
                     /protein_id="HEM5232107.1"
                     /translation="MKKENIIKSNGSIRKLKAYGAVGVLSIGMMTTVGTVSAKAEEVA
                     GTAIVATTTTSTEVTQGQVDQAQAQVDTSKEALNQATANVATAEQTVSAAEATYTTAT
                     GAVNDKQAEVATAQEQVDSNPIAAQAQEQVDTASQAVTATQNEIKETQTDVSNLENQV
                     SANETAVANAETQVTNAETAKAQADKQLAQDVADEKTAQDAVASAQADVNTAKTVVAE
                     KEAAVTTATQEVTTKEGEVATAETKLAEAQAADAKRQADINTAQSEVNNAQTGVNNAQ
                     TQLDSANANLTTVENNISTAQTELDKANLALNSIYTVELSETYKDLLNQFYKARYVTK
                     DTIEMNRVWALLQAESDRLYTASINAKNLRTLRDGLNAIESNKRVVVVANSGGLNQLT
                     REDRLELTQFAQTIINDLRSQMGITSEVLVTEGALDLANMVAKEYLADDWDMTKGHNS
                     QALLRVQDATNSRIEEDADPWSYTLTSDATMTTLKVRLATAIEAMMLDDYSQSQHFGH
                     AISLIGLDSKYLTNETGNQYFGLSGYTGSKNSALLMEFNDHGVVSSKIAGTPIANPIS
                     KEVLEAAVTSAENKLATAQAKLTPAQQAVTTATNKLQAAQGTLKLAQDKLAKAKAVPV
                     QTPAAQKALDTAKANLATAQAKLATAKAELANAKSDLAKKEGVLTSAQNTLRLAQADA
                     ATSRANVEAKAQALATTKTNLTNTQNTLLASQKALADEKAVLTNLQTALATAQNQLRT
                     AKTTLTTVQGYANKLNQLQAELEPLLAEQATAKTVLDNAKNKLATVTLEKSVAQANYE
                     KAVAELKTVQAQYDAYQAYLTAKAEADRLEAERIEAERKAEEARIKAEQDAKAKAEAE
                     KLANEAKAKAETERLAKEAAEKARLEVEKKAQEEITKAQEEAARLEAERLAAEKARLE
                     AEKKAEEEARIKAEKLRKAEEARLEAERIAREKAEQEAESNQNGESSEKPVTPAQPEQ
                     PTNPGEAPLVTEKGEPAYHELPAIDMSQLSFENAKLKNNETVVVKVQDTNAFSNNFED
                     KARYSRVERAKALPRTGTKDSTLLSLLGIGLASLSLAKVKRKNTGD"
     gene            4354..5475
                     /locus_tag="U1335_001646"
     CDS             4354..5475
                     /locus_tag="U1335_001646"
                     /inference="COORDINATES: protein motif:HMM:NF024760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrsW family intramembrane metalloprotease"
                     /protein_id="HEM5232108.1"
                     /translation="MNATRSPFCPNCGAKIDGSGNASVDAASDIVSGIANKINSVTGG
                     EGPVELRMRDLFSEVFKKHTREEAENIFACGSEKTTPRFEDISREWPKPWYFARVFGA
                     LLLSSIMLYFMYITFHNWNVLPGLMFVSAMAGAIPILFFYFECNSPRNIDIMTVLEIF
                     FIGGLLSLLATHMLGQIFPSGVGGIIPSMMTGIIEEVGKIVATAYYIKKLAEKRYIFN
                     GLLIGGAVGAGFAVFETAGYIFQSTLVNFETMNGSLPVFNSDPSEAVGVAIMRGLLAF
                     GGHVAWAAITGAGIMMVLKKQKNFEWSVLFTGESLRFLILVITLHGIWDMNLTNSDGG
                     ELIKVLILVITIMIIINRGLKEINDLGSEVSMPLSIERD"
     gene            5601..>6298
                     /locus_tag="U1335_001647"
     CDS             5601..>6298
                     /locus_tag="U1335_001647"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232109.1"
                     /translation="MKKIIVTLLMSSIFLTACSSKPAENTASSEKASSSEKIDTSSSE
                     NSSKSEEYKLVPYNEVHEFKNAKLSKGTLDDKGIYRYDFLNEDDAVYDAMSYEEVEDI
                     YPVQEQEKIEVTLGTNFTIDDFNFNLDNLTENTLYKNILGEEEAGGLLALELENGESE
                     DRSLRLPSQIGEVIEPIDISYTVINTAKRAVSVGDARIKRISVGHYGKTISKTTENLG
                     ARVAYEGINLFITRT"
BASE COUNT         2184 a         1113 c         1354 g         1647 t
ORIGIN      
        1 ttcgtacaaa agaagaatac ttcagaaacg atcaatgact gaaaacatca attttctaac
       61 tttgcagaat aggctgtaaa gcacagaagg tggtagctat cagggaaatt ggtcgttttt
      121 ttgcgtccaa taataatttt agaattctta ggaaaggatg gtatcttgtt gaatagtgaa
      181 gaactaacaa aatttttatt agacaagaca gaggaagatt tagggttgat ctatcgtttt
      241 ggtctggaag agggatgtac agataaagaa aaagtggcat ttgtgagagg tcgagtacgc
      301 gggtattgta gcgcagtttt tgctttgcta ttgaaacttc gttcatctca ggatgatgta
      361 aagatttcaa atgcgataca tgaactcatc caacttcgta gtcatgccga aaaacaaata
      421 gaggaatatg tatcaaataa atagagataa ttttaaggca gacaaaaaga cccatttcta
      481 aagaattagg actatgaaaa ttcattaatc aatctatttc aacgttttga tcaattggct
      541 tactgcttga ataacatcat ttcgcttgcc ttttggaagt tcggttaaca tcataattaa
      601 ttcgtccata ttttcatctt tgcttatctg catgtcaaaa aaagttggaa cgtcaacttc
      661 caaagcatcg attattttgt gcaacgtatt tattgtgatg ttgctttctt tagtttcaag
      721 tttattgatg taattaaaac ccaattcagc tcttgcttca agttctgttt gagtgagtcc
      781 agcctgaagc cgtagtgttt tgattctttt tgcaatgaat ttttgtagat tgtttgtcat
      841 aagactatct tacaaattat ttgaataaaa aaacttacat atataactga aataagtaga
      901 aaagtgttgt ttataactga tataaatgat aaaatagtaa taaattttgg gaggaaataa
      961 gtataatatg aaaaaagaaa atataatcaa atcaaacggt tcaattcgca aactaaaagc
     1021 ctatggtgca gttggcgttc tgtctatcgg gatgatgacc accgtaggta cagtgagtgc
     1081 gaaagcagaa gaggttgcag ggacagctat cgtcgcaact actacaactt cgactgaagt
     1141 aacgcaaggg caagttgatc aagcacaggc acaagtggac acaagcaagg aagctcttaa
     1201 tcaggcaaca gcaaacgttg caactgcaga acagactgtt tcagcagctg aagcaactta
     1261 cactactgca acaggtgcag tcaacgataa gcaagcagaa gtcgccactg cccaagaaca
     1321 agtggatagc aatccaattg ccgcacaagc acaggaacaa gtggatactg catctcaagc
     1381 tgttactgct acacaaaacg aaattaaaga aacacagaca gatgtatcaa atcttgaaaa
     1441 tcaagtatct gccaacgaaa cggctgtagc taacgccgaa actcaagtaa caaatgctga
     1501 gactgcaaaa gcacaagctg acaagcagtt ggcacaagat gtggcagatg aaaaaactgc
     1561 gcaagatgca gtagcaagtg cacaggcgga tgtgaatact gccaaaacag ttgtagcgga
     1621 gaaagaagca gctgtaacaa cagccactca agaagtaact acaaaagaag gtgaagtagc
     1681 tactgccgaa acaaaacttg cagaagctca agctgccgat gctaaacgcc aagcggacat
     1741 taacactgct caatcagaag tgaataacgc tcaaacaggc gtgaacaatg ctcaaactca
     1801 attagacagt gctaacgcaa acttgacaac tgttgaaaat aatatctcaa cagctcaaac
     1861 tgagttggac aaggcgaatt tggcacttaa ttcaatctac actgtcgagc tctctgaaac
     1921 atacaaggac ttgcttaacc aattctacaa agctcgctat gtcaccaaag acacaataga
     1981 gatgaatcgt gtatgggcgt tattacaggc tgagtcagat cgtttatata ctgcttcaat
     2041 caacgctaaa aatctccgca ctttgcgtga tggcttgaat gctatcgaaa gcaacaaacg
     2101 agtagttgtg gttgcaaaca gcggaggtct taaccagcta acaagagaag accgattgga
     2161 attaacgcag tttgcccaaa cgattatcaa tgatctccgt tctcaaatgg gcatcacatc
     2221 agaagtccta gttacagagg gggctctcga cctcgctaac atggtcgcaa aagagtattt
     2281 agcagatgat tgggatatga caaaaggaca taacagtcaa gctcttcttc gagtacaaga
     2341 tgctacaaat tcacgtattg aagaagacgc tgacccatgg agttacacac ttacctcaga
     2401 tgctacaatg acaactctta aagttcgttt ggcaactgct attgaagcaa tgatgcttga
     2461 tgactattca caatctcaac atttcggaca tgctatttca ttgattggtt tggattcaaa
     2521 atacctaact aacgaaactg gcaatcagta tttcgggctt tctggctata caggatctaa
     2581 aaactctgct ttgttgatgg aattcaatga ccacggagtt gtctcaagta aaattgcagg
     2641 aacacccatt gctaacccga tttctaaaga agtgttagaa gctgcagtta ccagcgctga
     2701 gaacaaacta gcaactgctc aagcgaaact gactcctgcc cagcaagccg tgacaactgc
     2761 aacaaacaaa ttacaagcag ctcaaggcac attgaaattg gcacaagata aactggctaa
     2821 ggcaaaagcg gtacctgttc aaacacctgc tgcgcaaaaa gcattggata ctgctaaagc
     2881 taacttggca actgctcaag caaaacttgc cactgctaaa gccgaacttg cgaacgctaa
     2941 atctgacctt gctaaaaagg aaggagtttt aacatcagct caaaacaccc ttcgtttggc
     3001 acaagctgat gcggcgacaa gtcgtgcgaa cgtggaggcg aaagcacaag ctcttgctac
     3061 tactaaaaca aatctcacga acacacaaaa cacattgttg gcttcacaaa aagctttggc
     3121 tgatgagaaa gcagttttaa ctaacttgca gactgccttg gctactgctc aaaaccagct
     3181 taggactgct aaaactactt tgacaacagt acaaggttat gcgaacaagc ttaatcaatt
     3241 acaagctgag ttggagccat tgcttgcaga acaagcaact gctaaaactg tattggacaa
     3301 cgctaaaaac aaactagcaa ctgtgactct cgaaaaatct gttgcacaag ctaactacga
     3361 aaaagcagtt gctgaattga aaacagttca agctcagtac gatgcttacc aggcttacct
     3421 aactgctaaa gctgaagctg atcgtttgga agcggaacgc attgaggcag agcgtaaggc
     3481 agaagaagct cgtatcaaag ctgaacagga tgctaaagcc aaagctgaag cggaaaaatt
     3541 agcgaatgaa gccaaggcca aagcagagac agaacgcctc gcaaaagaag ctgctgaaaa
     3601 agctcgttta gaggttgaga aaaaagctca agaagaaatt actaaagcac aggaagaagc
     3661 tgctcgttta gaagcagagc gcttggctgc agaaaaagcc cgtttagaag ctgagaaaaa
     3721 agctgaagaa gaagctcgca ttaaagcaga aaaattgcgt aaagcagaag aagcgcgtct
     3781 agaggcagag cgaattgccc gtgaaaaagc agagcaagag gctgagagta accaaaatgg
     3841 agaatcgtct gagaaaccag taaccccagc tcagcctgag caaccgacta accctggaga
     3901 agctccgttg gtgactgaaa aaggcgaacc tgcataccat gagctacctg caattgatat
     3961 gtctcagtta tcatttgaaa atgcaaaatt aaaaaacaat gaaacagttg tcgtgaaggt
     4021 acaggatact aatgcgtttt caaacaattt tgaagacaag gcgagatact cacgtgttga
     4081 aagagctaaa gcattgccaa gaacaggtac taaagatagc actttactat cactattggg
     4141 tattggtttg gcatcactaa gcttagctaa agttaaaaga aaaaatactg gagattaata
     4201 ctatgaaaaa aacaagaatg ggtagaagca tttgaggcaa ttaatgggag gagcccatct
     4261 gcccaagaat ataatgacgc aaaaattaaa ggagaattta gtgatgattc tccgaatgaa
     4321 tctagtgata aaacctgtcc gaaatgtcat caattgaatg cgactagaag tccattttgc
     4381 ccaaattgtg gtgctaagat agatggaagt ggtaatgctt ctgtggatgc ggctagtgat
     4441 atagttagtg gtatcgcaaa taaaattaac tcggtaactg gtggagaagg tccagttgag
     4501 ttacgtatgc gtgatttatt tagtgaggtc tttaaaaaac atactagaga agaggcggaa
     4561 aatatttttg cttgcggatc agaaaaaaca actccaagat ttgaagatat ctcacgagag
     4621 tggcctaaac cttggtattt tgcaagggtg tttggggcac tattgctgtc atctattatg
     4681 ttgtatttta tgtatatcac atttcacaat tggaatgtgc tccctggact gatgtttgta
     4741 tctgccatgg cgggggctat ccctatatta tttttctact ttgaatgtaa ttctcctcgt
     4801 aatatcgata ttatgactgt tttagagatt tttttcattg gggggttgtt atctttgcta
     4861 gcaacgcata tgctgggaca aatatttccg agtggggtag ggggtataat accatcaatg
     4921 atgacaggga taattgaaga ggttggtaaa attgttgcta ctgcatatta cattaagaaa
     4981 ttggcagaaa agcgatatat ttttaatggt ttattgattg gtggagcagt tggagcaggt
     5041 tttgcggtat ttgaaacagc tggttacatc tttcaaagta cactagttaa ttttgaaaca
     5101 atgaatggtt cacttcctgt ttttaattcg gatccttcag aggcagtagg agttgctatt
     5161 atgagaggtc ttttggcttt tggcgggcat gttgcttggg cagcgattac gggagcaggt
     5221 atcatgatgg tacttaaaaa gcagaaaaac tttgaatggt cagttttgtt tacaggtgaa
     5281 agtttgcgtt ttctaatttt agtcattacc ttacatggaa tttgggatat gaatctgaca
     5341 aattccgatg gtggtgagct aataaaggta ctgattcttg tcataactat catgatcatc
     5401 atcaatcgtg gtctgaaaga gattaatgat ttaggcagcg aagttagcat gccattgagt
     5461 atagaaagag actgatgtgt ttgtacaatt taccatgaat aaacaacata agttgacttg
     5521 gcagagtgaa ttaacataga agacaagaac ttctgtcaaa ttgataaaaa taataataca
     5581 caataatgag gatacaacta atgaaaaaaa taatcgtcac cttacttatg agcagtattt
     5641 ttctgacagc atgtagcagt aaacctgcag agaataccgc ctcatctgag aaagctagtt
     5701 caagtgaaaa aattgacaca tctagctcag aaaacagtag taaatcagag gaatacaaat
     5761 tagttccata caatgaagtt catgaattta aaaatgccaa actttccaaa ggtactttag
     5821 atgataaagg gatctataga tacgatttcc tcaacgaaga tgatgcggtt tatgatgcca
     5881 tgtcctatga agaagttgaa gacatttatc cagtacaaga gcaagaaaaa attgaagtaa
     5941 cgttaggaac aaactttaca attgatgatt ttaatttcaa cttggataac ttgacagaaa
     6001 atacactcta taaaaatatt cttggagagg aagaagctgg aggtttgtta gcacttgaac
     6061 ttgaaaatgg ggaatcggaa gatagaagtt tgcgattgcc ctctcagatt ggagaagtga
     6121 tagaaccaat agacattagc tatactgtca taaacactgc aaaacgagct gtttctgtag
     6181 gagatgctcg tataaaaaga attagtgttg gtcattatgg aaaaacgatt agtaagacta
     6241 cagagaatct aggtgctaga gttgcttatg aaggaataaa cttattcatt actcgtac
//
LOCUS       DASGAC010000121         6298 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.121, whole genome shotgun sequence.
ACCESSION   DASGAC010000121 DASGAC010000000
VERSION     DASGAC010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6298
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.121"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            38..1174
                     /gene="dnaJ"
                     /locus_tag="U1335_001648"
     CDS             38..1174
                     /gene="dnaJ"
                     /locus_tag="U1335_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002905343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEM5232110.1"
                     /translation="MNNTEFYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEAGAED
                     KYKEVQEAYETLSDPQKRAAYDQYGPAGANGGFGGGAGGFGGFDGAGFGGFEDIFSSF
                     FGGGGATRNPNAPRQGDDLQYAVNLKFEEAIFGVEREVSYNREATCRTCTGSGAKPGT
                     SPVTCGRCHGSGVINVDTQTPLGTMRRQMTCDVCHGRGKQIKDPCTTCHGTGHEKQAH
                     TVTVKVPAGVETGQRIRLAGQGEAGFNGGPYGDLYVVIQVQPSDKFEREGTTIHYKLN
                     LNFVQAALGDTVHVPTVHGDVDMVIPEGTQTGKTFRLKGKGAPSVRGGAIGDQYVTVN
                     IVTPTGLNDRQKAALKEFATAGNIDVKPHKKGFFDKVKDAFDEL"
     gene            1266..2711
                     /locus_tag="U1335_001649"
     CDS             1266..2711
                     /locus_tag="U1335_001649"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEM5232111.1"
                     /translation="MWKDATEMALAVRTGQVSARELVAEAIEQIEEKNPAINAVVSKQ
                     YEQALQEAETGNFQDKAFGGVPLLLKDLGQNEEGHLSTAGSRLFQNYRARHTDKLVQV
                     FKDLGFIILGRTNTPEFGFKNISDSSLHGPVKLPLDLSRNAGGSSGGAAAAVASGMIP
                     LAAASDGGGSIRIPASFNGLIGLKPSRGRIPVGPISYRGWQGASSNFALTKSVRDTKR
                     LLYHLQTYQVEAPFPLALLPEQALFSSKNKPLKIAYSLASPIDSSVSADAKQAVLSIL
                     PQLEALGHQITELASPVLDGLEVMQAYYLMNSVETAQMFDEIEAGLGRPMTPDDMEVM
                     TWAIYQSGQTIPAKLYSKVLQDWDRYSAIMADFHQHYDLLLTPTVADVAPKLDQFTHS
                     QEMLDRLLHTQELAMAEQQSLIWEMFADSLAWTPFTQQANITGQPAISLPTYKTPKGL
                     PIGVQFTAAKGREDLLLQLADQMEAAGLLNL"
     gene            2835..3710
                     /locus_tag="U1335_001650"
     CDS             2835..3710
                     /locus_tag="U1335_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000751024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEM5232112.1"
                     /translation="MLKKVLASALLVSTLTLAACSSSSSNTSSSSAEQTQWEKVQEAG
                     VLKVATPGTLFPTSYYNDAKELVGYEIDMINEIGKRLKLEIEYQEIGVAEAFTAVDSG
                     KVDISVNNFDMTEARKEKYNFSIPYKYSVGGYIVREDGSSGIEAADLSDWTGKKAGGG
                     AGTQYMKIAEKQGAEPVIYDNVTNDVYLRDVSTGRTDFIPNDYYTQVMAIKWANANFP
                     DIKVKMGDAKYNPTEQGIVMSKADTSLKEKIDEALEAMKADGTLKAISEKYYAGQDLT
                     VPVENADELPVIEVE"
     gene            3801..4472
                     /locus_tag="U1335_001651"
     CDS             3801..4472
                     /locus_tag="U1335_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5232113.1"
                     /translation="MDINWQAVFNADIAREAIPQILEGLPYTLSLSLIGFALGTFCGF
                     FVALMRMSKFGPLRWLAMAHISLMRGIPLMVLLFFIYFGLPFMGLQLDAISASIIAFT
                     SMSSAYISEIIRASLSAIDKGQWEAARSLGLRTNVIYRKIIIPQAFRIALPPLSNVLL
                     DMVKSTSLTAMITVPEIFNKAKIVGGAKSDYMTVYICVALIYWVICTLYAFGQLKLEK
                     RLATY"
     gene            complement(4510..4980)
                     /locus_tag="U1335_001652"
     CDS             complement(4510..4980)
                     /locus_tag="U1335_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232114.1"
                     /translation="MKKYISLIALCMMIPCLSACHSVISEVNKEMQNELTADSIETEK
                     ALKADESLAKIENFQQIVEITTSKGEFSLESPFSGKIYLMATKENLEKLSKEEFTLNE
                     KSFSTIDAGSSSDFNIRYKHQTYFTIQSLSVQDVEDFEYTKSSSTSAILVFYPD"
     gene            complement(4992..5498)
                     /locus_tag="U1335_001653"
     CDS             complement(4992..5498)
                     /locus_tag="U1335_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2975 domain-containing protein"
                     /protein_id="HEM5232115.1"
                     /translation="MNKKIFFNVVIQLLTFIRYGLIALTGLIMLALLILLIGGKPIQN
                     SLQLDVPLPIIVIILIISILLVACFIYMATILKKLLINFQTGTIFSTENVVYTKIILG
                     TLIVWTSIQFASAFFLSYLDLKNVSDLYDFSLSDYFINGVLIIIALLAKMVLEKGVLL
                     QAENDEII"
     gene            complement(5500..5715)
                     /locus_tag="U1335_001654"
     CDS             complement(5500..5715)
                     /locus_tag="U1335_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5232116.1"
                     /translation="MEMIRVNLDKILKDRQMTSKDLAEQIGITEANLSILKTGKAKGI
                     RFNTLMSICRILDCQPGDILEYVREEE"
     gene            complement(5717..6241)
                     /locus_tag="U1335_001655"
     CDS             complement(5717..6241)
                     /locus_tag="U1335_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232117.1"
                     /translation="MKTNLLKTAGIVAACVRYFFYLLIASYIFFSLAGLGGDSFAIGS
                     WEYSFNKPIDQIGIWLILLATGLILVVLAALSHIAHLLQKLCKLLLEEDYFASASLEL
                     YQKLFISLLVLTAGQFCLTSLFALTNAAGPNNFLNLRWSDFILNALFLLATYFVWRLV
                     QKGQQLATENSEFI"
BASE COUNT         1795 a         1281 c         1459 g         1763 t
ORIGIN      
        1 tttctttgag tcgcttaacg gcttaatatc ttacattatg aacaacacag aattttacga
       61 tcgtctgggg gtttctaagg atgcctctca ggacgagata aaaaaagctt atcggaagtt
      121 gtccaagaag taccatccag atatcaacaa ggaggcaggt gctgaggaca agtacaagga
      181 agtccaagag gcttatgaaa ccttgagcga tccgcagaaa cgggcagcct atgaccagta
      241 tggtccagcg ggagcaaacg gtggcttcgg cggaggagct ggtggttttg gtggtttcga
      301 cggagcaggt ttcggtggct ttgaagatat tttctctagt ttctttggtg gaggtggtgc
      361 gacgcgcaat cctaatgcac ctcgtcaagg ggatgacttg caatatgcgg tcaatttgaa
      421 atttgaagaa gcgatttttg gtgtggaacg tgaagtttcc tataaccgtg aggcaacttg
      481 tcgaacctgt acaggttcag gtgccaaacc tggaacaagt ccagtaacct gtgggcgttg
      541 tcatggttct ggagtgatca atgtggacac ccaaactcca cttggaacca tgcgtcgtca
      601 aatgacttgt gatgtctgtc atggtcgcgg aaaacaaatc aaagatccgt gtacaacctg
      661 tcatggaact ggtcatgaaa aacaagctca cacggtaacg gttaaggtgc cagctggtgt
      721 ggaaactggt caacgtattc gcttggcagg tcaaggtgaa gcaggtttca atggaggtcc
      781 atacggagat ctctacgttg tcattcaggt ccaaccttca gacaagtttg aacgtgaagg
      841 aaccactatt cactataaac tgaacctcaa ctttgttcaa gcagcacttg gagatacagt
      901 tcatgtgcca acggttcacg gtgatgtgga tatggtcatt cctgaaggta cccagactgg
      961 taagaccttc cgactcaaag gaaaaggtgc accaagtgtt cgtggtggag ctattggtga
     1021 tcaatatgtc acagtaaata tcgtcactcc gacaggtttg aatgaccgcc aaaaagcagc
     1081 tcttaaagaa tttgcgacag caggaaatat tgatgtcaaa ccccataaaa aaggattttt
     1141 tgacaaggta aaagatgcct ttgatgaatt gtaatttgtt ttgaacagat attcaaaatc
     1201 agtaagcgtg gcttgctgat tttttacttt catgataagc taataaaaaa tacaaggaga
     1261 agcctatgtg gaaagatgcg acggaaatgg ccttggctgt tcgaacaggt caggtttctg
     1321 ccagagaatt ggtagcggaa gctattgaac aaatcgaaga gaaaaatcca gctatcaatg
     1381 cagttgtcag caagcaatac gagcaagccc tgcaagaagc agaaacgggg aattttcaag
     1441 ataaggcctt tggcggcgtt cctctcttat tgaaagactt ggggcaaaat gaagaagggc
     1501 acttgtcaac agcgggctct cgtctattcc agaattaccg agcgaggcat actgataaat
     1561 tggtacaggt tttcaaggat ctaggtttca tcatcttggg tcggaccaat acgccagagt
     1621 ttggttttaa aaacatatct gactccagcc tacatggtcc ggtcaagttg ccactagatc
     1681 tgagccgcaa tgcaggtgga tccagtggcg gagcagcagc tgcggtggct tctggcatga
     1741 tacccttggc agcagcttcg gatggtggcg gatctatccg tattcccgcc tccttcaatg
     1801 gtttgattgg gctcaagccc agtcggggtc ggattccagt tggaccaatt tcttatcgag
     1861 gttggcaggg cgcttccagc aactttgcct tgaccaagtc ggtccgcgat accaaacgcc
     1921 tcctatatca cttgcagacc tatcaggtgg aagctccctt tcctctggct cttctgcctg
     1981 aacaggctct cttttcatcc aagaacaagc ccctgaagat tgcttacagt ctagcatcgc
     2041 cgattgacag ttcagtttcc gctgatgcca aacaagctgt cttgtccatt ctgcctcagt
     2101 tagaagcact ggggcaccag attaccgagc tagcaagtcc tgttttggat ggccttgaag
     2161 tcatgcaggc ctattacctg atgaacagtg ttgaaacagc tcagatgttt gacgagattg
     2221 aagcggggct gggtcgtccc atgacccctg atgacatgga ggtcatgacc tgggctattt
     2281 accagagcgg gcagaccatc ccagccaagc tctattccaa agtcttacag gattgggacc
     2341 gctacagtgc catcatggcg gacttccatc agcactacga tctccttctg acgccgactg
     2401 tggcggatgt agctcccaag ctagaccagt tcactcactc gcaagagatg ctagaccgct
     2461 tgttgcacac gcaggagttg gcaatggcag agcagcagag cttgatttgg gagatgtttg
     2521 cggacagtct agcctggaca ccctttaccc agcaggcaaa catcaccggc caaccggcta
     2581 tcagcttgcc aacttataag acccccaaag gcctgccaat cggcgttcaa ttcacagcag
     2641 ccaagggacg agaggattta ctcttgcagt tggcagacca aatggaggca gcaggtttac
     2701 tcaacttgta agggaattca ttttttcagt tcaattattt gccaaaacgt tttcaaaatg
     2761 ttaacctgta aaagttggtg ggttaacacc gaaaaattaa aaaggaagtt atagcttcca
     2821 aaggagattg ttttatgttg aaaaaagttt tggcctcagc tctcttggtt tctactttga
     2881 ccttggcagc atgttctagc tcaagttcga atactagcag ttcttctgct gaacagactc
     2941 aatgggaaaa agtacaagaa gcaggtgtct tgaaggttgc aacaccaggt acccttttcc
     3001 caacttctta ctataacgat gctaaagaat tggtcggata tgaaattgat atgatcaatg
     3061 aaattggtaa acgtttgaaa ttggaaatcg aataccaaga aatcggtgta gcagaagcct
     3121 ttacagctgt ggacagtggt aaagttgata tttctgttaa caactttgac atgacagaag
     3181 cacgtaagga aaagtacaac ttctctatcc cttacaagta ttcagttggt ggctacattg
     3241 ttcgtgaaga cggttcatca ggaatcgaag cagctgactt gagcgactgg actggtaaaa
     3301 aagctggtgg tggcgcaggt actcagtaca tgaaaattgc tgaaaaacaa ggcgcagagc
     3361 cagttatcta tgacaacgta accaatgatg tttacttgcg tgatgtttca acaggtcgta
     3421 cagacttcat tccaaacgat tactacacgc aagtgatggc tatcaaatgg gcaaatgcta
     3481 acttcccaga catcaaggta aaaatgggtg atgcaaaata caatccaact gaacaaggta
     3541 ttgtcatgag caaggctgac acaagcttga aagaaaaaat tgacgaagct cttgaagcga
     3601 tgaaagctga cggaactttg aaggcaattt ctgagaaata ctacgcagga caagacttga
     3661 cagtccctgt tgaaaatgca gatgagttgc cagttatcga agttgaataa gacctcgtaa
     3721 caaattaaat gcatcttgta tagactttgt cagtcacaga ctggcaaggt ctatctggtt
     3781 tttaggaaag aggagaagat atggatatta actggcaggc agtttttaat gcagatattg
     3841 caagagaggc tattccacag attttggagg gacttcccta cactctatcc ctatccctaa
     3901 ttggttttgc cttggggact ttttgtggat tttttgtagc cctcatgcgg atgtctaagt
     3961 ttggcccctt gcgttggtta gctatggccc atatttctct catgcgtgga attcccctca
     4021 tggttcttct tttcttcatt tattttggtt tgccgtttat ggggctacaa ctagatgcta
     4081 tctccgcatc tattatcgcc tttacctcca tgtctagtgc ctacatttct gaaattattc
     4141 gtgcatctct ttcagcgatt gataagggac agtgggaggc ggcgcgttcc ctgggcttgc
     4201 ggaccaatgt gatttacaga aaaatcatca ttccccaagc ctttcggatt gcccttccac
     4261 cactgagcaa tgttctcttg gatatggtga aaagtacgtc cttgaccgct atgattacag
     4321 tgccagagat tttcaacaag gccaagattg tcggaggagc caagtcggat tatatgacgg
     4381 tttatatctg tgtagccctc atttattggg ttatctgtac cctttatgca tttggtcagc
     4441 tcaagctaga aaaacgcttg gcgacttatt aaaaaaattc ctcggttctt ttgaatcgag
     4501 gagtttttgc tagtctggat agaagacaag aatagcggag gtggaagagg atttggtgta
     4561 ttcaaaatct tccacatctt gcacggacaa gctttgaata gtgaagtaag tttgatgttt
     4621 gtagcggata ttaaaatcgc tgctactacc agcatcgata gttgagaagc tcttttcatt
     4681 cagagtaaac tcttcttttg agagtttctc gagattttct tttgttgcca ttagatagat
     4741 tttgccagag aaaggagatt cgagagagaa ttctcctttg gatgtcgtga tttcgacaat
     4801 ttgctgaaag ttctcaatct tagccagact ttcgtctgct tttagagctt tttctgtttc
     4861 gatggaatcc gctgttagct cgttttgcat ttctttattc acttctgaaa tgacagagtg
     4921 acaagcactt aagcaaggta tcatcatgca gagtgcaatg agggaaatat actttttcat
     4981 cgtgggctcc tttatataat ttcatcattt tcagcttgta aaagcacacc tttttccaac
     5041 accatctttg ctagtagtgc aataataatc agcacaccat ttatgaagta gtcactaagt
     5101 gaaaaatcat ataaatcact tacattcttt aaatctaggt aagataggaa aaaagcactt
     5161 gcaaattgta tgctcgtcca tacgattaag gttcctaaaa ttatctttgt atagactaca
     5221 ttttcagttg agaaaatagt tcctgtttga aagttgatga gcaatttttt gagtatggtg
     5281 gccatgtaga taaagcaggc taccaatagg atacttatga ttagaataat aacaatgata
     5341 ggcaagggga catctaattg tagactattt tgaataggtt tcccgcctat aagtagaata
     5401 agaagtgcca acattatcag tcccgttaag gcaatcaatc cataacgaat aaacgttagc
     5461 aactgtatga cgacgttgaa aaatatcttt ttgttcatgc tattcctcct ccctcacata
     5521 ttccaaaata tctcctggtt ggcagtctag gattcggcag atgctcatca gggtattgaa
     5581 gcgaatacct tttgctttgc ctgttttgag aatggacagg ttggcctctg taatgccaat
     5641 ttgttctgcc aagtccttgg aggtcatttg tcggtccttg agaatcttat ctaagtttac
     5701 gcgaatcatt tccatatcag ataaactcac tgttctcagt tgctaattgt tgcccttttt
     5761 gaaccaatct ccagacaaaa taagttgcga ggaggaagag ggcattgagg atgaaatctg
     5821 accaacgcag attgaggaag ttgtttggtc cagcagcgtt tgtcaaggca aacaagctgg
     5881 ttaggcaaaa ttgcccagca gtcaagacga gcaaactgat gaagagtttc tgataaagtt
     5941 ccagactagc tgaagcgaaa taatcttctt ccagaagcaa tttacataac ttttgaagta
     6001 agtgggcaat gtgactgagt gccgctaaga caactagaat caatccagtc gctaacagaa
     6061 tgagccagat accaatctgg tcaatgggtt tgttaaagga gtattcccaa gagcctatcg
     6121 caaaggagtc gcctccaaga ccagccaggc taaagaaaat atagcttgca attaataaat
     6181 agaagaaata gcgaacacaa gcagccacaa tgccagctgt tttgagtaga ttggttttca
     6241 tagcaaacct ccgattatta ttgttttatg ataatattat ctctgaaatt attataaa
//
LOCUS       DASGAC010000122         6289 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.122, whole genome shotgun sequence.
ACCESSION   DASGAC010000122 DASGAC010000000
VERSION     DASGAC010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6289
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.122"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            262..1857
                     /locus_tag="U1335_001656"
     CDS             262..1857
                     /locus_tag="U1335_001656"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HEM5232118.1"
                     /translation="MNNSNNSQSLYQSLWNAADILRGKMDANEYKSYLLGLIFYKYLS
                     DKLLLAVCDNLDESFDSLSQAQRLYEENFADPDVKEDLLDVLDDELGYFIEPGLTFTA
                     LVAKVHTSNFQLEDLAQGFRDIEQSNEIFENLFEDIDLYSKKLGPTPQKQNQVISALI
                     KELHELNLSNHDGDVLGDAYEYLIGQFASDSGKKAGEFYTPQAVSHLMTQIVFLGREH
                     QKGMTLYDPTMGSGSLLLNAKRYSKEASTVSYFGQEINTSTYNLARMNMMLHGVAIEN
                     QKLHVGDTLDADWPTTEPTDFDGVLMNPPYSQKWSGDAGFLQDARFSSYGVLAPKSKA
                     DFAFLLHGFYHLKHSGVMAIVLPHGVLFRGNAEQKIRQHLLEEGAIDTVIGLPANIFY
                     NTSIPTTVIILKKNRTSKDVLFIDASKEFDKGKNQNIMTDDHIAKILKVYQDRQDVDK
                     FAHLASFEEIVENDYNLNIPRYVDTFEEEPVVPLTELADKLAQTDKEIAETTAQLEAM
                     LGQLVGTAPEAQAELTAFLEKLK"
     gene            1936..2610
                     /gene="rpiA"
                     /locus_tag="U1335_001657"
     CDS             1936..2610
                     /gene="rpiA"
                     /locus_tag="U1335_001657"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HEM5232119.1"
                     /translation="MTNLKEQVGIKAAEFVTDGMIVGLGTGSTAYYFVQEIGRRVAEE
                     GLQITGVTTSHATAEHAASLGIPLKNIDEVEYVDLTVDGADEVDGDFNGIKGGGAALL
                     MEKVVAVNSKDCIWIVDESKVVQTLGAFKLPVEVVQYGAENLFRLFEKKGYRPSFRMR
                     NGKKHITDMQNFIIDLDLRRIEDTYALADELDKTVGVVEHGLFIGLISKVIVGTPEGP
                     NIIEKK"
     gene            2938..4149
                     /locus_tag="U1335_001658"
     CDS             2938..4149
                     /locus_tag="U1335_001658"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HEM5232120.1"
                     /translation="MPKFKRVHLVVMDSVGIGAAPDSDKFFNAGVADTESDTLGHISE
                     KAGLAVPNMAKIGLGNIPRDTALATVPAESHPTGYVTKLEEVSLGKDTMTGHWEIMGL
                     NITEPFDTFWDGFPEEILTKIEEFSGRKIIREANKPYSGTAVIDDFGPRQMETGELIV
                     YTSADPVLQIAAHEDIIPLDELYRICEYARSITLERPALLGRIIARPYVGEPGNFSRT
                     ANRHDYAVSPFEATVLNKLADAGVPTYSVGKISDIFNGSGITNDMGHTKSNMHGVDVL
                     IDTLKLSDFEEGFSFTNLVDFDAVYGHRRNIEGYRDCLQEFDARIPEIIDNMREDDLL
                     LITADHGNDPSYAGTDHTREYVPLLAYSKAFKGSGVLPVGHFADISATVAENFGVDTA
                     MIGESFLEKLV"
     gene            4149..4505
                     /locus_tag="U1335_001659"
     CDS             4149..4505
                     /locus_tag="U1335_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HEM5232121.1"
                     /translation="MEKLTVYYNPDCSKCKKLRILLSSQDMEVKWVNYLETPLRGAEL
                     TALLEKMGSQPSAVTRLKEEERLALSEEEILERLVKEPALLNRPIIEREQTAFLCRPL
                     EIIKEKMPEYDWSDYL"
     gene            4517..5326
                     /locus_tag="U1335_001660"
     CDS             4517..5326
                     /locus_tag="U1335_001660"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEM5232122.1"
                     /translation="MSLLTKINETKAFLEEKGLVKPEFGLILGSGLGELAQEVENAIV
                     IDYADIPNWGKSTVVGHAGKLVYGDLAGRKVLALQGRFHFYEGNPMEVVTFPVRVMKA
                     LGCEGVIVTNAAGGIGYGPGTLMAITDHINMTGQNPLIGENLEEFGPRFPDMSNAYTK
                     EYREKAHTVAEKLGIKLDNGVYLGVTGPTYETPAEILAFKTMGAHAVGMSTVPEVIVA
                     AHSGMKVLGISAITNFAAGFQSELNHEEVVEVTEQIKGNFKGLVKAILAEL"
     gene            5352..5513
                     /locus_tag="U1335_001661"
     CDS             5352..5513
                     /locus_tag="U1335_001661"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232123.1"
                     /translation="MKPFNPDKWILIGILLMAIVAVAYLFFKPVHSIPYIAITTLLSI
                     LLQSKNKKK"
     gene            5535..6248
                     /gene="deoD"
                     /locus_tag="U1335_001662"
     CDS             5535..6248
                     /gene="deoD"
                     /locus_tag="U1335_001662"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007519526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEM5232124.1"
                     /translation="MSIHISAKPGEIADKILLPGDPLRAKFIAENFLEDAVCFNEVRN
                     MFGYTGTYKGHRVSVMGTGMGMPSISIYAHELINDYGVKKLIRVGTAGSLNKDVHVRE
                     LVLAQAAATNSKMMNIDWPEYDLPQIASFNLLDKAYHIAKELNMTTHVGNVLSSDSFY
                     SPKLFSRNLELGQLGVKAVEMEAAALYYLGAKFGVETLAIMTISDSLVNPEEDTTAEE
                     RQNTFTDMMKVGLETLIAE"
BASE COUNT         1825 a         1348 c         1434 g         1682 t
ORIGIN      
        1 atgctaattt gagcaggtac ctccgacgtg agatttttga aacgatattt ttcaaaaatc
       61 gagctagtgc gagccttaga caaatcgaat aggatttgtc gttacttgat gagtaagttt
      121 acttaccatc aagtataggc tagcctttct gtaagatttc ggacttattt ccataagcac
      181 cacctccagt tagaaagttg gaaccaccgt catatttctc tacttatcta ttataccata
      241 tctttagaaa gaatcacaga catgaacaat tcaaacaact ctcaatccct ttaccagtcc
      301 ctttggaatg cggcggatat tctccgtggc aagatggacg ctaacgaata caagtcctac
      361 cttttgggct tgattttcta caaataccta tcagataagt tgcttttggc agtgtgtgac
      421 aaccttgatg aatcctttga tagtttgtca caggctcaaa ggctctatga agaaaatttt
      481 gcggatccag atgttaagga agatttgcta gatgtccttg atgatgagct aggttacttt
      541 atcgagcctg gtttgacctt tacggccttg gtagcaaaag tccacaccag caacttccag
      601 ttggaagatt tggcacaggg cttccgtgac attgagcagt ccaacgagat ttttgaaaac
      661 ctttttgaag acatcgacct ctactctaaa aaattgggtc caacaccaca aaagcagaat
      721 caggtcattt cagcccttat caaagaactc catgaactca acctcagcaa ccatgatgga
      781 gatgttttgg gagatgccta tgaatacctg attggtcagt ttgccagcga ctcaggtaag
      841 aaagcgggcg agttctatac acctcaagcg gtttcccacc tcatgaccca gattgtcttt
      901 cttggacggg aacatcaaaa gggcatgacc ctctatgacc caaccatggg atcaggctcc
      961 ctccttctta acgccaagcg ttacagtaaa gaggcttcga ccgtttccta cttcggtcag
     1021 gagattaaca cctcgaccta caacctggcc cgcatgaaca tgatgctcca cggggttgcc
     1081 atcgagaacc aaaaacttca tgttggtgat acccttgatg cggactggcc aacgactgag
     1141 ccgacagact ttgacggggt gctcatgaac ccaccttatt ctcagaagtg gagcggggac
     1201 gctggtttct tgcaagacgc tcgtttctcc agctatggtg ttctggcacc caagtccaag
     1261 gctgacttcg ccttcctcct tcatggtttc taccatctca agcattcagg tgttatggcc
     1321 attgtcctcc ctcacggggt tctctttagg ggaaatgcag agcagaaaat tcgtcagcat
     1381 ctcctagaag aaggagccat tgataccgtg attggtctac cagccaacat cttctataat
     1441 acctccattc caaccacagt catcattctc aagaaaaacc gcaccagcaa agatgttctc
     1501 tttatcgatg catctaaaga atttgacaag ggcaaaaacc aaaatatcat gaccgatgac
     1561 catatcgcca agattttgaa agtctatcaa gaccgtcagg atgtggacaa gtttgcccac
     1621 ctagctagct ttgaggagat tgtggaaaac gactacaacc tcaacatccc tcgctatgtc
     1681 gatacctttg aggaagagcc agttgttcca ctaacagagc ttgcggataa gctggcccag
     1741 accgacaagg aaattgcaga aactacagca cagctcgaag ccatgctagg tcagctagtc
     1801 ggcaccgcac cagaagcaca ggcagaatta actgcttttc tggaaaaatt gaagtagtta
     1861 attttatgta ttcgctatcc tcttaaacca gttcgtggta taattatttc atgaatgact
     1921 tcaaaggaga caaagatgac aaatcttaaa gagcaggttg ggattaaggc ggcggaattt
     1981 gtgacggacg ggatgattgt tgggctggga actggttcga ctgcctacta tttcgtgcag
     2041 gagattggcc gccgggttgc agaagaaggg ctacagatca caggcgtaac gacctctcat
     2101 gctacggcag aacatgctgc gtcccttggg attcccctaa aaaatatcga cgaagtcgaa
     2161 tatgtggact tgacggtgga tggagcagat gaggttgatg gggacttcaa cgggattaaa
     2221 ggcggtggcg cagcacttct catggagaaa gtggtagcag tcaatagcaa ggactgcatc
     2281 tggattgtgg atgagtctaa ggtggttcaa accctaggag ccttcaagtt gccggtggaa
     2341 gtcgtgcagt acggtgcgga aaatcttttc cgactatttg agaaaaaagg gtatcgtcca
     2401 agttttcgta tgcgtaatgg aaaaaaacat atcacggata tgcagaactt tatcattgac
     2461 cttgatttgc gcagaataga agacacatat gcattggcgg acgaactgga taaaacagtg
     2521 ggcgtcgttg agcatgggct ctttattgga ttgatttcca aggtaattgt tggtacacca
     2581 gaaggaccga acatcatcga aaagaaataa attgaaaccg cttctcattt tggtacaatg
     2641 agaggcgttt ttgtggtata atgaaaacac gaacgtttag actcttcaaa aatctatccc
     2701 cttacctcgt agcagtcaga tgataggtac tgaaaaagcg atagctgaac agcaggcagt
     2761 gaagcgagta acagtatcta gttttgatag ttaggaagtt tgatgccgag agctgtgact
     2821 gtataagtat tgcaccccat taaaatgttt agatgtggta acgataattt ccagtctagc
     2881 aacttggttg gacgttgatt ttggttgaat ctaactattc aaataaagga gacaattatg
     2941 cctaaattta aacgtgttca cttggtagtt atggactctg tcggaatcgg cgcagcacca
     3001 gactcagata aatttttcaa tgcgggtgta gcagatacag aatctgacac tctcggccac
     3061 atttctgaaa aagcaggtct agctgtgcca aacatggcta aaatcggtct tggaaatatc
     3121 cctcgagata cagcgcttgc gacggttcct gctgaaagtc atccaactgg ctacgtgacc
     3181 aagctggaag aagtgtcgct cggaaaagac accatgacag gccactggga aatcatgggt
     3241 ctcaatatta ctgagccatt tgatacattc tgggatggtt tccctgaaga gattttgaca
     3301 aaaatcgaag aattctcagg tcgtaaaatc atccgcgaag caaacaagcc gtattcaggt
     3361 acagctgtca ttgatgactt tggccctcgc caaatggaaa ctggggagtt aatcgtctat
     3421 acttccgcag accctgtgct tcagattgca gcccacgaag atattattcc gctggatgaa
     3481 ttgtaccgta tctgtgaata cgctcgttcc attacccttg aacgcccagc tcttctaggc
     3541 cgtatcatcg cccgtccata cgttggtgag ccaggcaatt tctcacgaac tgcaaatcgt
     3601 catgactatg cagtatcacc gtttgaagca acagtactca acaaactggc agatgcgggt
     3661 gtaccaactt actcagttgg taaaatcagt gatattttca atggttcagg tattacaaat
     3721 gatatgggtc acaccaagtc caacatgcac ggtgtcgatg tgttgattga tactctgaag
     3781 ttatcagact tcgaagaagg tttctccttc acaaacttag ttgactttga tgctgtgtat
     3841 ggtcaccgtc gcaatatcga aggctaccgc gattgtttgc aagagtttga tgcacgtatt
     3901 ccagagatta ttgacaatat gcgtgaagat gacctgctct tgattactgc agaccacggc
     3961 aatgatccat cctatgcagg tacggaccat acccgtgagt atgtgccact cttagcatac
     4021 agcaaggctt tcaaaggtag cggtgtcttg ccagtaggcc attttgcgga tatctcagca
     4081 accgttgcgg aaaacttcgg agtggacaca gccatgattg gcgaaagctt cttggagaaa
     4141 ctagtttaat ggagaagcta acggtctatt acaatcctga ctgtagcaag tgtaaaaaat
     4201 taagaatatt gctgtccagt caggatatgg aagtcaagtg ggttaattat ttggaaacgc
     4261 cattaagggg ggctgaattg acagctctct tggaaaaaat gggcagtcaa ccttcagcag
     4321 ttactcgatt gaaggaagaa gaacgactag ccttgtcaga agaagaaatc ttagagcgtt
     4381 tagttaaaga gcctgctctt ctcaaccgtc ccattatcga gcgagaacag acagccttcc
     4441 tctgtcgtcc gcttgaaatc attaaagaaa aaatgccaga atatgactgg tcggattatt
     4501 tataaaagga gaaaaaatga gtttacttac aaaaatcaat gaaacaaaag cttttttgga
     4561 agaaaaaggt ttggtaaaac ctgaattcgg tttgattttg ggttctggct tgggtgaatt
     4621 ggcccaagaa gttgaaaatg ccattgtcat cgactatgca gacattccaa actggggtaa
     4681 atcaacagtt gttggtcacg ctgggaagtt ggtgtacggt gatttggcag gacgtaaggt
     4741 cttagctctt caaggtcgtt tccacttcta cgaaggaaat ccgatggaag tcgtgacttt
     4801 cccagtccgt gttatgaaag cccttggctg tgaaggcgtg attgttacta atgccgcagg
     4861 tggtatcggc tacggtccag gtacccttat ggccattaca gaccacatca acatgactgg
     4921 ccaaaatcca ttgattggcg aaaacttgga agaatttggt ccacgtttcc cagatatgtc
     4981 aaatgcctac actaaagaat accgtgaaaa agcccatacc gttgcggaaa aattgggtat
     5041 caagttggac aatggtgtct atcttggtgt gacaggtcct acctacgaaa ctcctgctga
     5101 aatcttggcc ttcaagacca tgggtgccca tgcagtcggt atgtcaaccg tgccagaagt
     5161 tatcgtggcg gcccactcag gtatgaaagt cttgggaatt tctgctatca ccaactttgc
     5221 ggctggcttc caatccgaac tcaaccacga agaagtcgta gaagtcactg agcaaatcaa
     5281 aggcaacttc aaaggcttgg tcaaggcaat cttggcggaa ttgtaagatt gtcaagaaga
     5341 gtgtgtacag tatgaaacct tttaatccag ataaatggat actgattggt attcttttaa
     5401 tggcgatagt agctgtcgcc tacctctttt tcaaacctgt ccacagtatc ccttatatcg
     5461 ctattactac cttactctcc atcttgcttc aaagtaaaaa taagaaaaaa taattgagaa
     5521 aaggaaagct ctatatgtca atccatattt ccgcaaaacc aggtgaaatc gctgataaga
     5581 ttttgcttcc tggtgatccg cttcgtgcta aatttatcgc tgaaaacttc cttgaagatg
     5641 ccgtttgctt caacgaagtt cgcaatatgt tcggctacac aggtacctac aagggtcatc
     5701 gtgtctctgt catgggaaca ggtatgggaa tgccatctat ctctatctac gcccacgagc
     5761 ttatcaatga ctacggcgtg aagaagctta tccgtgtagg aactgccggt tcgctcaaca
     5821 aggatgtcca tgttcgtgaa ttggttttgg cgcaagcagc cgcaaccaac tctaaaatga
     5881 tgaacattga ttggccagaa tatgacctgc cacagattgc tagctttaat ctcttggaca
     5941 aggcttatca tatcgccaaa gaactcaaca tgacaacgca tgttggcaat gttttatcat
     6001 cagatagttt ctattctcca aaattgttta gccgcaactt agaattaggt caactaggtg
     6061 tcaaggcagt cgaaatggaa gcagcagccc tctactactt gggtgctaaa ttcggcgtag
     6121 aaacgcttgc cattatgacg atttcagata gcttggtcaa tccagaagaa gacaccacag
     6181 cagaagagcg tcaaaatact ttcacggata tgatgaaagt tggtttggaa actctgattg
     6241 cagaataaaa aaataggcaa actatttatg caattttgta taatagctt
//
LOCUS       DASGAC010000123         6267 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.123, whole genome shotgun sequence.
ACCESSION   DASGAC010000123 DASGAC010000000
VERSION     DASGAC010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6267)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6267)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6267
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.123"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..931
                     /locus_tag="U1335_001663"
     CDS             <1..931
                     /locus_tag="U1335_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011681261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HEM5232125.1"
                     /translation="LEVPWNIFLPLLSELFSRKDKVISYGGRPHLDYLMMFKVLLLQR
                     LHNLSDDAMEYQLLDRLSFRRFVGCHEDTVPDAKTIWLYREKLTKSGREKELFDLFYA
                     HLTDEGVIPHSGQIVDATFVEYPKQRNSREDNQKIKNGEKIEGWNKTKRSPKDVDATW
                     TRKGGIRYFGYKNHICVDRKSKHIKNYEVTTASVHDSDVLAPLCDANEAVFDDSAYVG
                     KSVPEGCRHHTIRRAFRNKPLTETDKVINRHISKVRCRVEHVFGFIEMNMKGSICRAI
                     GKARAKTNVTLTNLLYNICRFEQIKRLGLPSWA"
     gene            1210..1578
                     /locus_tag="U1335_001664"
                     /pseudo
     CDS             1210..1578
                     /locus_tag="U1335_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935801.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            2248..2852
                     /locus_tag="U1335_001665"
                     /pseudo
     CDS             2248..2852
                     /locus_tag="U1335_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445255.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
     gene            3034..3522
                     /locus_tag="U1335_001666"
     CDS             3034..3522
                     /locus_tag="U1335_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EbsA family protein"
                     /protein_id="HEM5232126.1"
                     /translation="MIKIFGKIRYHWQPDLSWAIIYWSLTFTPIFIGMTLLLEKLRVS
                     RLFILLLSLFVVLVVLGLHRYFEIKEKHLRIASANPFAVQRIEIATIEKIEVSYLAIR
                     IFSQEFPNGQVYHMRKWPKKYFINHLAIHNCFKGEIELIDHLIKQDYFEEYYTKKAKS
                     IR"
     gene            complement(3511..3705)
                     /locus_tag="U1335_001667"
     CDS             complement(3511..3705)
                     /locus_tag="U1335_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HEM5232127.1"
                     /translation="MKIKLIPERCIACGLCQTYSSIFDYDDDGIVVFSDESQFEKTIE
                     PNPDILKAIKSCPTKAISAD"
     gene            3756..4238
                     /locus_tag="U1335_001668"
     CDS             3756..4238
                     /locus_tag="U1335_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM5232128.1"
                     /translation="MSQEPWNEEVYQTETVSRKERLNKGVASTTVFTVLAIIFFVIVL
                     IIGITAIYLSVGGSKTDSTKEFYNPSSAAVVAESSTSVAETQESTSTDATETETTETS
                     SSLAEATDGSTLTVQAGEGVGQLAARGGISIAELERLNPEKMTTGSWLAHPGDVVRIR
                     "
     gene            4248..4925
                     /locus_tag="U1335_001669"
     CDS             4248..4925
                     /locus_tag="U1335_001669"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005590592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HEM5232129.1"
                     /translation="MKSIQIAIDGPASSGKSTVAKIIAKNFGYTYLDTGAMYRSATYL
                     ALTNGIEVTDQNRIVALLAQYPIRFGRDENGQQLVFVGDEDVTLPIRDNQVTNNVSAV
                     AALPLVREGLVRLQQEIAQAGGIVMDGRDIGTVVLPQAELKIFLIASVEERALRRFKE
                     NMERGIETDLESLKQEIAARDYKDSHREVSPLKAADDAITFDTTGVSIESVVKFISEK
                     AKEILDK"
     misc_feature    4952..5080
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00558"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L20 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00558"
     gene            5106..5627
                     /gene="infC"
                     /locus_tag="U1335_001670"
     CDS             5106..5627
                     /gene="infC"
                     /locus_tag="U1335_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000848185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEM5232130.1"
                     /translation="MAKQDLFINDEIRVREVRLIGLEGEQLGIKPLNEAQAIADSANV
                     DLVLIQPQAKPPVAKIMDYGKFKFEYQKKQKEQRKKQSVVTVKEVRLSPVIDKGDFET
                     KLRHARKFLEKGNKVKVSIRFKGRMITHKEVGAKVLAEFAEATQDIAIIEQRAKMDGR
                     QMFMQLAPASDKK"
     gene            5652..5852
                     /gene="rpmI"
                     /locus_tag="U1335_001671"
     CDS             5652..5852
                     /gene="rpmI"
                     /locus_tag="U1335_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEM5232131.1"
                     /translation="MPKQKTHRASAKRFKRTGSGGLKRFRAYTSHRFHGKTKKQRRHL
                     RKAGMVHAGDFKRIKSMLTGLK"
     gene            5895..6254
                     /gene="rplT"
                     /locus_tag="U1335_001672"
     CDS             5895..6254
                     /gene="rplT"
                     /locus_tag="U1335_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019786714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEM5232132.1"
                     /translation="MARVKGGVVSRKRRKRILKLAKGYYGAKHLLFRTAKEQVMNSYY
                     YAYRDRRQKKRDFRKLWITRINAAARMNGLSYSQLMHGLKLAEIEVNRKMLADLAVND
                     AAAFTALADAAKAKLAK"
BASE COUNT         1978 a         1181 c         1321 g         1787 t
ORIGIN      
        1 tttagaggtc ccatggaata tctttcttcc attgttgtca gagttattca gtcgtaaaga
       61 taaagtcatc agttatggcg gtcgtcctca cctagactac ctcatgatgt tcaaagtgct
      121 cttgcttcaa cgtcttcata acctatctga cgatgccatg gaatatcaac tgctggatcg
      181 tctatctttt cgtcgttttg ttggttgtca tgaagacact gttcccgatg cgaaaactat
      241 ctggctctat cgtgagaaat taaccaagtc aggtcgtgaa aaggagttgt tcgatttgtt
      301 ctatgcccat ctcacagatg aaggggtgat tccccattca ggtcagattg tggatgctac
      361 ctttgtcgaa taccctaaac aacgcaattc acgtgaggac aatcagaaaa tcaagaacgg
      421 cgaaaagata gaaggttgga ataagactaa acggagccca aaagacgtag atgcgacttg
      481 gacacgcaaa ggtggtatcc gctattttgg ctataaaaac catatttgtg tcgatagaaa
      541 atcaaaacat atcaaaaatt atgaggtcac aacagctagt gtacacgact ccgatgtcct
      601 agctcctctt tgtgatgcca atgaagcggt ttttgatgac agtgcttatg ttggaaaatc
      661 agtaccagaa ggttgtcgcc accacacgat tcgtcgtgcg tttagaaata aaccgttgac
      721 tgagactgat aaagtcatta atcgacatat ttccaaagtc cgttgtcgcg ttgagcatgt
      781 ttttggcttt attgaaatga acatgaaagg tagcatctgt cgagcaattg ggaaggcacg
      841 tgctaaaacc aatgtgacct taaccaacct gctctacaat atctgtcgtt ttgagcaaat
      901 caaacgactg ggattgccat cgtgggctta gtgcgcccaa aaataggaaa ataagcaaaa
      961 ggaagtggga aagacatcca tgatggctcc gccctcaccc acagaataat gaaaacgaac
     1021 ataaagccct cactaggtgt ataatcttag tgagggcttt gtggttgacg agttaatgat
     1081 gttagcatcg tgggaaaaac taacccactc tactgacgag caccccaaaa tatgcgatag
     1141 gcatgagtat aaaaatacga ctaaaattcg gtagataagc tctctaattt ttagaaggag
     1201 ggaattatca tggatgttct ctatcaatct tgtgcaggta ttgatgttca tcaagccaat
     1261 atcgttgtct gtatcctaca cggaccactc acctcaactc gtccaaagcg tgagacggct
     1321 acatttgata caacgactaa aggcctacgt gcttgccacg attttctcag tcaatttcat
     1381 gtggaagctg ttggtatgga aagcacaggt gtttattggc gacctgtctg gcatgctcta
     1441 tgtgatgact tcaagttgat actcgctcaa ccagcccaca tgaaggctat tccaggtcag
     1501 aaaaccgaca agttaaaaga gcagataacg tattctgaat ttttagcaca gaaaaagact
     1561 actagggacg agctagtagc ctaacataaa aaattttttc gctttgattc tatcataggg
     1621 agagagtttt tgtattcttt tgagttttcg tataagaact cgaccaagat aaagagttcg
     1681 tcaacaagtc tttatttcta gttgttgagc tgaaccagtc tatccccaga catcaattca
     1741 tgtgagctga ctgccgtcag cttatatctc ccactttaaa aggtctccca gaccttttaa
     1801 actcccaccc ccgtatagct ccaaaggttc ggggaacctt tggaggttgg agatatagcg
     1861 aacgaagttc gcaacagtcg ttaagtcaga gtagtgactg ttggaggttg gaaatgaagc
     1921 gaactctgtt cgcatcagtc gtaatggcca gatttggagt gcaaaacacg aattgctgag
     1981 atttgcttcg caaatcttat ctccaacctt cttcctcgct ttcatgcttc gaggctcagg
     2041 ctgaaacagt tctccgaact gtttcactcc actggactgt taaacccaat caaccactgc
     2101 gctgagatgt tgacacgaac tctgagtagt ggtcctgggc tttttgccca gcctctggaa
     2161 ataatgctta caattagggc ttacttaaca actacttgaa gtttttagag gtgcccagaa
     2221 caaatttgcc aaaagaatgc aatcgtaatg cataccgcac aaggaggagg tattggaaaa
     2281 gattggaatt tggcactctc ttttgtaaca accccttatg ctacaattgc tcatcaagat
     2341 gatatttatt taccagacta ttgtgaaaaa ataatgtctc agatgacaga ggaaacgttg
     2401 attgcttatt cagattacca ggaagttaag gaaggtgtgg ctattccctt aacttcaaat
     2461 ttgaaaatca agcaactcat gttacggaca atggccatgt ttcccaaatg gaagttttgg
     2521 cggaataggg ttttagcctt tggtaatcca atttcttgtc cagctgtgac ctataatttg
     2581 aagaaactga atgatttcag gtttaatgaa gaaatgaaag tttctcttga ttggtttgct
     2641 tggtatcaga ttacacaaaa aaagggagct ttacctttgt agatgagagt ttgatatatc
     2701 atcgtatcca tgaggaatct gagacgacaa atagcattga aaacaatatt cgtacacaag
     2761 aagaccatga aatgtatttg ttgttctggc cagagtttat tgccaaattt ctcttgagat
     2821 actatgttaa gagtcaagaa acgaacaact aaaatatttt ggttgttgat tattgtattc
     2881 ccaccaattc ctactcaaaa tatttcaaaa acatttcaga agttttacaa acaaactaat
     2941 attgtcatgt aaatgtaata aaaatttcaa aagatagagg ttttcatagg aaaatctcta
     3001 tttttgtgct agaataatag atggaggtcc gatatgatca aaatttttgg taaaattcgt
     3061 taccattggc aaccggattt atcatgggcc attatttact ggtcacttac cttcacgcct
     3121 attttcattg gtatgacact tttattggaa aagttgagag tttcaagatt atttatctta
     3181 cttctctctc tctttgttgt attagtagtg cttggcttac atcgctattt cgagataaaa
     3241 gaaaagcatt tacggattgc ttcggctaat ccttttgcag tacagagaat tgaaattgct
     3301 accatagaaa aaattgaagt ttcttatcta gccattcgca tattttcaca agaatttccc
     3361 aatgggcagg tgtatcacat gcgcaaatgg ccgaaaaaat actttattaa ccatttagct
     3421 attcataatt gcttcaaggg tgagattgaa ttaatagacc atttaataaa acaggattat
     3481 tttgaagagt attatacaaa aaaagccaaa tcaatccgct gaaatggctt ttgtaggaca
     3541 tgatttgatg gctttgagaa tatctggatt gggttcaatc gttttctcaa attgtgactc
     3601 gtctgaaaaa acaacgatac cgtcgtcatc ataatcgaat atagatgaat aggtttggca
     3661 gagcccgcag gcaatgcacc gttcaggaat aagttttatt ttcatattag tattgtaatc
     3721 atattttaat aaaaatacaa ggagttttct cgataatgtc acaagagcca tggaatgaag
     3781 aagtttatca aacagaaaca gttagtcgaa aagaacgtct aaacaaggga gtagcaagta
     3841 caacagtatt tacagtcttg gcaattattt tctttgttat cgtactgatt attggtatca
     3901 ctgccatcta tttgtcggtt ggaggaagta aaacagattc aactaaagaa ttctataatc
     3961 caagctccgc ggcagttgta gcagaaagtt caacttcagt tgcagaaaca caggagtcta
     4021 cttctactga tgcgacagaa acagaaacaa cggaaacaag ttccagtcta gcagaagcta
     4081 cggatggctc tacccttact gttcaagcag gtgaaggtgt tggacaatta gccgcacgtg
     4141 gcgggatttc aattgctgag ctagagcgat taaatccaga gaaaatgacc acagggtctt
     4201 ggcttgcgca tccaggtgat gtagtccgta ttagataaag aggagttatg aaatcaattc
     4261 aaattgcaat tgacggtcca gcttcaagtg gaaagtcaac ggttgctaaa attattgcta
     4321 aaaattttgg atatacttac ttagatacag gagctatgta tcgctcggct acctatctag
     4381 ccttgacaaa cggcatagag gtcacagatc aaaatagaat cgtggccttg cttgctcagt
     4441 atcctattcg atttgggcgt gatgaaaatg gccaacaatt agtttttgta ggtgatgaag
     4501 atgtcacttt accaattcgt gataaccaag ttacaaataa tgtatcggca gtagcagcac
     4561 tccctctagt acgggaagga ttggtacgac tgcaacagga aattgcccag gctggcggta
     4621 ttgtcatgga tggtcgcgat attggaacag ttgttttacc acaggcagaa ctcaaaatat
     4681 tccttattgc ctctgttgaa gagcgtgccc tccgtcgatt taaggaaaat atggaacgtg
     4741 gcattgagac cgacttggaa tctctaaagc aggaaattgc ggctcgtgac tataaagatt
     4801 cccatcgaga agtttctcct ttaaaggcag cagacgatgc cattaccttt gatacaacag
     4861 gagtatccat cgaaagtgta gtgaaattta tttccgaaaa agcgaaagaa attcttgaca
     4921 agtagtttta gacatgttag aatagtcgta ttgagaaaag cagaagtgag agcttctcgc
     4981 cttgcgacta acgttgtctg gctctacgga ttaagatttc ttcggaaaga ataatggtgt
     5041 agtgcggact tgtttagcaa gtccgtttcg tttttctcga aaaatataaa atgaggtgaa
     5101 aagccatagc aaagcaagat ttgttcatca atgatgaaat tcgagtgcgt gaagttcgtc
     5161 ttatcggtct tgagggtgaa cagttgggaa tcaaaccgct caatgaggct caggccattg
     5221 ctgatagcgc caatgtggat ttagtattga ttcaaccaca agctaaacca ccagtagcga
     5281 aaattatgga ctacggtaag ttcaaatttg aatatcagaa gaaacagaaa gaacaacgca
     5341 aaaaacaaag tgttgtcact gtgaaagaag tgcgtctaag tccagttatt gataaagggg
     5401 actttgagac aaaacttcgt catgcccgta aattccttga aaaaggaaat aaggttaagg
     5461 tttcgatccg tttcaagggt cgtatgatta cccacaaaga agttggagcg aaagtattag
     5521 ctgagttcgc tgaagcaacc caagatattg cgattatcga acagcgtgct aagatggacg
     5581 gacgtcaaat gtttatgcaa ttggccccag cttcagacaa aaaataagct atttagcaaa
     5641 aggagaatat catgccaaaa caaaaaactc accgcgcatc agctaaacgt ttcaaacgta
     5701 caggttctgg tggcttgaaa cgcttccgcg catatacttc acaccgtttc cacggtaaaa
     5761 ctaaaaaaca acgtcgtcac cttcgtaaag caggtatggt acatgctggt gacttcaagc
     5821 gtatcaaatc aatgcttaca ggacttaaat aagtcgatta ctagaaatta gagaattatt
     5881 cggaggaaat atacatggca cgtgttaaag gtggcgttgt ttctcgtaaa cgccgtaaac
     5941 gtattttaaa attagctaaa ggttactatg gagctaaaca tctcttgttc cgcactgcga
     6001 aagaacaagt aatgaactct tactactatg cataccgtga ccgccgtcag aaaaaacgtg
     6061 atttccgtaa attgtggatc actcgtatca acgcagctgc tcgcatgaac ggtttgtcat
     6121 actcacaatt gatgcacggt ttgaaattgg cagaaatcga agtaaaccgc aaaatgcttg
     6181 ctgatttggc agtaaatgat gcagcagctt tcacagctct tgcagacgct gctaaagcta
     6241 aacttgctaa ataaatatat aaaataa
//
LOCUS       DASGAC010000124         6260 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.124, whole genome shotgun sequence.
ACCESSION   DASGAC010000124 DASGAC010000000
VERSION     DASGAC010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6260
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.124"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            44..6106
                     /locus_tag="U1335_001673"
     CDS             44..6106
                     /locus_tag="U1335_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941479.1"
                     /note="The YSIRK form of extended signal peptide directs
                     nascent proteins to the cross-wall site, while signal
                     peptides lacking YSIRK direct proteins instead to the cell
                     pole. A large fraction of YSIRK proteins are surface
                     proteins anchored by sortase-mediated processing of a
                     C-terminal LPXTG motif; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HEM5232133.1"
                     /translation="MRAYSKELFSKKNRYSIRKLTVGAASVIVGISLFSGGTVLAEGI
                     ALADTPVETIENNDVSNTNEGVVDQNSSQTDEVVATDIEAVRTELNFAQSESQEAVAE
                     WTPTSTPAGTVEVVEEEGIRYNRLSSVAGQDNSTNIGTFENSDLKMNADGSAEVSLSF
                     VERSEPEKARFGVYLNHTDQNKHVLVGYDKGGWFWEYKSPSGSTWYQGQRVPAPERNV
                     LYELSVNLTSTGEISASIISDSMTEAQELFAAKQIPEAAWNDLKNTRSAKLKVTSRDA
                     DRTVVDIVAKNQEGVSETASQPTTNATTGTGETNTPTAPTTPTPVATENTAPTTIGPD
                     WRPASTVQGTVGVVEVNGVRYNALASTTSNNNSENVALFVKEGLTVDASDNANLAVTF
                     VENSEAGHGRFGVYLKHRDERNHIFVGYDSGGWFWEYKVNGQGNYLSNRSVQAPTKGS
                     TNRLEISYKSDGQLNATVNGQNLFDTYTVGTEVRQALANDKRIALKLGTYGQQLTKVN
                     VVADNQDGVKPVETTTEDAIVLNDSNVSYETLASDVLTAKIDRAFPRIKEYTMQGEKV
                     YGQVNPIRTLRINDYEVTPTVTFNKVSDRVAEYVLDVVDEAKKLNVAIKVKVEVAGNE
                     LHFDVTEVNNRNQVTPGQTIDDVAKLVQSISFANNNLVSVASTQAGAKFDGARMSTNT
                     HQTGDRHVDVQDNTPSSSAGFMYGFVSTDKLAAAVWSNSQHGTGGADDFTRLTANSER
                     YSLNGETGVHYGIASSPWQWQKAHNSVVYPAYTLELPSAKVVFTKDANKDNVVDWQDG
                     AIAYRQIMNNPKGHEYVPELVAYRIAMNFGSQAQNPFLMTLDGIKKIALHTDGLGQSV
                     LLKGYGSEGHDSGHLNYADIGKRIGGTEDFKTLIEKSQPYGAKLGIHVNASETYPESK
                     YFSEEILRRHANGEYVYGWNWIDQGINISGHYDLAHNRLKRWENLKKELGDGLDFIYV
                     DVWGNGQSGGENAWETHILSKEINMQGWRNAFEWGYAGEYDSTFQHWAADLTYGGYRL
                     KGINSNIVRFIRNHQKDSWVGDYPDYGGAANYPLLGGYNMKDFEGWQGRSDYNGYITN
                     LFANNLMTKYIQHFKVTSWKNGTPVTMTDHGETYRWTPEMEIGLEDEDGNKLLLRRKS
                     NDVRNEGYRQRTVTLNGRTIQDGAAYLVPWNWDANGNDLTSDKHKMYYFNTAAGATTW
                     TLPSDWTGNKVYLYKLTELGKTDVQELAVTNGQITIQADANVPYVLYKSPQTNPEMSW
                     SDGMHIYDQGFNSGKLDHWTIDGDTSKATLVKSQGANDMLRIQGNTSKVSLSQKLTGL
                     KPNTSYAAYVGVDNRSTAKASITVNTGSSEVTNYTNESIALNYVKAYAHNTLQQNATV
                     DNTSYFQNMYVFFTTGDNVDNVRLTLSRDADAAATYFDEIRVFENDSTMFAGGHNTTA
                     GTFKQNFESVPQGIFPFVIGGIERVEDNRTHLAEKHAPYTQRGWNGKKVDDVIEGTWS
                     LKTNGLTGRNSIVYQTIPQNFRFEAGKAYRVSFDYEAGSNGTYAFAIGEGRYNNDTGS
                     LTLNPLNNSWEGSDKAKKASFLVTGAESGNTWVGIFSTRRGGDTKGDTSGNANFRGYN
                     DFMLDNLVIEEVTLTGHLLTTDYYNLNTPVLNENYTQASLAPYKEALLAVSAAPEDIS
                     IEDARTLIATANTARQNLQVKKTAITNEDIGLAQANAQEGEELAKAFDGNPSTIWHTP
                     WNGRHINEPATVNLRRPVDIQRFEYVPRQSGRNGILKALTLVITDDQNVEHTFTGADW
                     PATSATKTIDFGKTIKAKKIVITGTASYGDTADQFMSAAEFRFLTPVQEEATLDKAAY
                     EAALAAARSAGKTALVKEVEDFMASVEAANLLTANILDATVARLNASEIPSNPGTVEQ
                     PVDEPVKQDEDIVTAKGESTKADPLPLGELPPLVIAKGDSVKAEPLPAFDGGLVPNYA
                     PTAAALPSIDPVNLAKEAASPKPAKATSATLPQTGETTEQGLLLAAGLVGLMAMVARR
                     RRFE"
BASE COUNT         1945 a         1259 c         1428 g         1628 t
ORIGIN      
        1 gtgtatatta tattaataac aaaagataaa aaggaggcag acgatgagag cttactctaa
       61 ggaattattt tctaagaaga atagatattc aattagaaaa ttgacagtag gtgcggcgtc
      121 agttatcgta ggaatttctc tattttcagg tggaacagta ttggcagagg gaatagcgct
      181 tgccgatact cctgttgaga cgatagaaaa caacgatgtt agcaatacaa atgaaggagt
      241 tgtagatcaa aatagctccc aaacagacga ggtagttgct acggatatag aagcagtacg
      301 gacggaattg aattttgccc agtcagaatc tcaagaagcc gttgcggaat ggacgccaac
      361 ttctacaccg gctggtacag ttgaggtggt tgaagaagaa ggaattcgtt acaaccgctt
      421 gtcctctgtt gcaggtcagg acaattcgac aaatattgga acatttgaaa attctgactt
      481 gaagatgaat gcagatggca gtgcggaggt atcattgtca tttgtagaac gttctgaacc
      541 agaaaaggct cgatttggtg tttatctcaa tcatactgat caaaataaac atgtcctagt
      601 tggatatgat aaaggtggtt ggttctggga gtacaagtct ccaagcggaa gcacatggta
      661 ccaagggcaa cgggtacctg ctcctgaaag aaatgttctc tatgaattaa gtgttaacct
      721 gacatctact ggggaaattt ctgcatctat tatttcagat tccatgactg aagctcagga
      781 attatttgct gccaagcaaa ttcctgaagc agcttggaat gacttgaaga atacacgctc
      841 agcaaaatta aaagtaacta gccgtgatgc tgaccgtaca gtggtagata ttgttgctaa
      901 aaaccaagaa ggagtttcag aaactgctag ccagccaaca acgaatgcca caactggtac
      961 aggagagacg aatacaccta ctgctccaac tacaccaacc ccagtagcaa ctgaaaatac
     1021 agctcctaca accattggtc cagactggcg tccagcatcg actgttcaag gaacagttgg
     1081 tgtcgtagaa gtaaatggtg ttcgctataa tgcccttgct tctactacat ctaataacaa
     1141 ttctgagaat gtagccttgt ttgttaaaga aggtttgaca gtagatgctt cggacaacgc
     1201 caaccttgca gtgacctttg tggaaaattc agaagcaggt catggtcgtt ttggtgtcta
     1261 tttgaaacac agagatgaac gcaaccatat ctttgtcggc tatgacagtg gtggttggtt
     1321 ctgggaatat aaggtaaatg gtcaaggtaa ttacctcagc aatcgcagtg ttcaagcacc
     1381 aactaaggga agcactaacc gcctagagat ttcttataag tcagacggac aattaaatgc
     1441 gactgtcaat ggtcagaact tatttgatac ctatacagtc ggaacagaag ttcgtcaagc
     1501 cttggcaaat gacaagcgca ttgccttgaa attgggtacc tatggccaac aactaaccaa
     1561 ggttaacgtg gttgcagaca accaagacgg cgtcaaacca gttgagacaa caacagaaga
     1621 tgcaattgta ctaaatgata gcaatgtttc ctacgagacc cttgcttcag atgttcttac
     1681 tgctaagatt gaccgtgcct tcccacgtat caaagaatat acgatgcagg gtgaaaaggt
     1741 ttatggtcag gtcaatccaa tccgtaccct cagaatcaat gattacgaag ttacaccaac
     1801 agttactttc aataaggtaa gtgacagagt tgcagagtat gttctagatg ttgttgatga
     1861 agctaagaaa ctaaatgtcg ctatcaaggt taaggtagag gttgctggga atgagttgca
     1921 ctttgatgtg acagaagtaa acaaccgtaa ccaagtaact cctggtcaga ccattgatga
     1981 tgttgctaaa ttggtacaaa gtatctcttt tgccaataat aacttagtat cggtggctag
     2041 cacacaggct ggtgctaagt ttgacggtgc acgtatgtct accaatactc accaaacagg
     2101 tgatcgtcac gtagatgtgc aagacaatac accaagctct agtgcaggat ttatgtatgg
     2161 atttgtttct actgataagc tagctgctgc ggtatggagc aattcacagc acggtacagg
     2221 tggtgcagat gactttactc gtctgactgc aaacagcgaa cggtacagtc taaatggtga
     2281 aacaggtgtc cactacggta ttgcaagctc accttggcag tggcaaaagg cacataacag
     2341 tgttgtatat ccagcctaca ccttggaatt accaagtgct aaggttgtct ttacaaaaga
     2401 tgctaacaaa gacaatgtgg tagactggca agatggtgct attgcttacc gtcaaattat
     2461 gaacaatcca aaagggcatg aatacgtacc agaattggta gcttaccgta ttgccatgaa
     2521 ctttggttca caagcgcaaa acccattcct gatgaccttg gatggtatta agaagattgc
     2581 tcttcataca gatggtctag gtcaaagtgt tcttcttaaa gggtatggta gtgaaggtca
     2641 tgactctggt cacttgaact atgcagatat tggtaaacgt atcggtggca cagaagactt
     2701 taagactttg attgaaaaat cgcaaccata tggcgcaaaa ttaggtattc acgttaacgc
     2761 atctgaaacc tatccagaat ctaaatactt ctctgaagaa attcttcgtc gtcacgcaaa
     2821 tggcgagtac gtttatggct ggaactggat tgaccaaggt atcaatatca gtggtcacta
     2881 tgatttggct cacaaccgtc tgaaacgttg ggaaaatttg aagaaagaat tgggcgacgg
     2941 cttagacttt atctatgtcg atgtatgggg taacggccag tctggtggcg aaaatgcttg
     3001 ggaaacccat attctttcta aggaaatcaa tatgcagggt tggagaaatg cctttgaatg
     3061 gggctatgca ggtgagtatg actcgacctt ccaacactgg gcagcagact tgacttatgg
     3121 cggataccgt ctaaaaggta ttaacagtaa cattgttcgc tttattcgca accaccaaaa
     3181 agactcttgg gttggtgatt acccggatta tggtggtgcg gccaactatc cacttctcgg
     3241 tggttacaat atgaaagact ttgagggttg gcaaggtcgt agtgattaca atggctatat
     3301 tacaaacctc tttgctaata acctcatgac caagtatatc cagcacttta aggtaacaag
     3361 ctggaagaac ggtacaccag ttaccatgac agaccatggt gaaacctaca gatggacacc
     3421 tgaaatggaa attggtctag aagatgaaga tggtaacaaa ctcttgctca gacgtaagtc
     3481 aaatgatgtg agaaatgaag gctatcgcca acgtacagta accctcaatg gtcgtacgat
     3541 tcaagatgga gcagcttact tggtgccttg gaactgggat gcgaatggta atgacctgac
     3601 tagtgacaaa cacaaaatgt actacttcaa cactgctgca ggtgctacaa cctggaccct
     3661 cccatcagat tggactggta acaaggttta cctctacaaa cttactgagc ttggtaagac
     3721 agatgttcaa gaattggcag taacaaatgg tcagattacc attcaagcgg atgcaaatgt
     3781 gccgtatgtc ctctataaat ctccgcagac aaatccagag atgtcatgga gcgacggcat
     3841 gcatatctat gaccaaggct ttaactcagg taagttagac cattggacaa ttgatggtga
     3901 tactagcaag gctactttgg tcaaatccca aggtgccaac gatatgctcc gtatccaagg
     3961 caatacatcc aaagttagtc tcagtcaaaa attgactggc ctgaaaccaa ataccagcta
     4021 tgcagcttat gtaggggtag acaaccgcag tacagcaaaa gctagcatta cagtcaatac
     4081 aggcagttca gaagttacaa actatacaaa tgagtctatt gctctgaact atgtaaaagc
     4141 ctatgctcat aatacattgc aacaaaacgc aacggttgat aatacaagtt acttccaaaa
     4201 catgtatgtc ttcttcacaa ctggagacaa tgtggataat gtacgcttga ccctatctcg
     4261 tgatgcagat gcggcagcaa cctattttga tgaaattcgt gtctttgaaa atgactcaac
     4321 gatgtttgca ggaggtcaca atacaactgc tggtaccttc aagcaaaact ttgagagtgt
     4381 tccacaaggt attttcccat ttgttatcgg tggtattgaa cgagttgagg acaaccgtac
     4441 ccaccttgca gaaaaacatg ctccatatac tcagcgtggc tggaatggca agaaagtgga
     4501 cgatgtcatt gaaggcactt ggtcactcaa gacaaatggt ctgacaggtc gcaatagtat
     4561 tgtttaccaa actattccac aaaacttccg ctttgaagct ggcaaggcct atcgtgtgag
     4621 ctttgactat gaagcaggtt ccaatggaac ttatgccttt gctatcggtg aaggacgtta
     4681 taacaatgat accggtagcc taacgctgaa tccattgaac aattcatggg aaggtagtga
     4741 taaggctaag aaagcaagct tcttagttac aggtgcagag tctggcaata cttgggttgg
     4801 tatcttctca actcgccgtg gtggtgatac caagggagat actagtggaa acgctaactt
     4861 ccgaggctac aatgacttta tgctggataa tctggtgatc gaagaagtta ccttgactgg
     4921 tcacttgttg acaacggatt actataactt gaatactcca gtcttgaatg aaaactatac
     4981 tcaagcaagt ttggcaccgt acaaagaagc tttgttagca gtgtctgcag ctcctgagga
     5041 tattagtatc gaagacgctc gtaccttgat tgctactgcc aatacagccc gtcaaaatct
     5101 tcaagtgaag aaaacagcaa tcacaaatga agatattggc ttggctcagg ctaacgctca
     5161 agaaggtgaa gaactagcca aagcctttga tggcaatcct tctactatct ggcacacacc
     5221 atggaatggc cgtcatatta atgagccagc gacagtgaac cttcgtagac cagttgacat
     5281 tcaacgtttt gaatatgtgc cgagacaatc aggccgcaac ggtatcttga aagcattgac
     5341 attggtgatt acggatgatc aaaacgtgga acataccttt actggtgcgg attggccagc
     5401 aacaagtgct actaagacaa ttgatttcgg taagacaatt aaggctaaga agattgtgat
     5461 tacaggtact gcctcatacg gtgatactgc agatcaattc atgtccgctg cagaattccg
     5521 cttcttgacc cctgttcagg aagaagccac ccttgacaag gcagcatatg aagcagccct
     5581 tgcggccgca cgttcagcag gtaagacagc tcttgtcaaa gaagtggaag actttatggc
     5641 ttctgtcgaa gctgcaaatc ttttgacagc aaatatctta gatgctacag ttgctcgctt
     5701 gaatgctagt gaaataccat caaacccagg cacagttgag caaccagttg atgagccagt
     5761 caaacaggat gaggacatcg tcactgctaa aggagaaagt accaaagcag atcctcttcc
     5821 gttaggggaa ttgccaccgc ttgtgattgc aaaaggtgat agtgttaaag cagaaccatt
     5881 acctgctttc gatggaggct tagttcctaa ctatgctcct acagcagctg ctcttccaag
     5941 tattgatcct gtaaacttgg cgaaagaagc tgctagtcca aaaccagcaa aagctacttc
     6001 agctacttta ccgcaaacag gtgaaacaac tgaacaaggc ttgctcctag cagctggttt
     6061 agtaggtcta atggctatgg tggctcgaag aagacgattt gagtagtcat ttcagaatag
     6121 aataacatag cttgttctcc aaatacatta gaggtagatc tcggacctgc ctcttttgta
     6181 ttgtttatcg aaccttttcg caaccttata gcaaaatgga attagaaaca gggcacgtct
     6241 aagtttatac atttgaaaat
//
LOCUS       DASGAC010000125         6194 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.125, whole genome shotgun sequence.
ACCESSION   DASGAC010000125 DASGAC010000000
VERSION     DASGAC010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6194
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.125"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            268..2898
                     /locus_tag="U1335_001674"
                     /pseudo
     CDS             268..2898
                     /locus_tag="U1335_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027981.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
     gene            3196..>6194
                     /locus_tag="U1335_001675"
     CDS             3196..>6194
                     /locus_tag="U1335_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEM5232134.1"
                     /translation="MALYSDGNVASSIPKDIEFFIADGTAAASYANPVKMTLKGTSTT
                     NGTTQYHYEVKGTNIGVAVFIKPEVNSNPGFDNFRSTHTLEFYYENIGNKTIVARIKM
                     RKVRITNTYYYYNGAMRAYNDGVGGARYIYRRAAETTARGGAIPTDWYSLKLQKVGIE
                     NGQKKALEGAAFTLYDANKKPYQTVRSNANGEFTFSELLAGTYTFKEISVPPGYILDP
                     TEHTIVVTNSQNITIDGKQYDANNPTEVVNTKPTTLQINKFELGESQPLKGAVFRLQS
                     KNGGNYDITIGNDIPASQFVFANLTKGTYTLTETKAPAGYKPITPLDIEVYEENGELK
                     IRKLTDLSNTQTGAIEVVNGNFSIDVVDEDFSTEFTKVNEQGQPLADAVFELRQLTQT
                     GYKRVLTGLTSNSQGKLHVDHLQGGTTYELWETSAPSGYSKPTTAVARFTVSDTGAIT
                     FASGSSQIINRPPTYKVKVQKVDALTGQKVTVQTRIGITDSQGNVIDGQIANFTNGEF
                     SFPKNFAPGTYYIKEETTPSGYIGLSGLVPFTIRADGVVEVSSDYLEGIDVTTSSPDT
                     ITIKVKNYPLGRFKVSKRIKGISDLTNLITGQMTFTLTKNDDPNVTIVKQQAASQDFI
                     FENLQPGVYTLTETQAPSGYIKSTETYTIQVDRDGSVRFYPNSDTSSHLATGLRVIKS
                     ADIAATTTHGSSTEDKALDGNLTTGALYRLSNATLNEGQWWGVDLGSVQRVTQILFAQ
                     GKNATDGSDRDKMDSYTLEYSSDGITYQSLGDFTTLDLTQSVDVYARYIRVRNLQTGT
                     NRWLGIRELQVSVRDATQTIEAGGSNDTANIIKIGNIENPEFKIEKVDSNNNQISKPV
                     TFKLYKVDDNTTADTVSSVTLDDSNLVQTLTFTGQSDMTRLTATALGKYVLVETQAPE
                     GYDGLDGPVLLELYETTQAYALTQQKAVTRFRVLSSTNSVSIADLPGVAGVLANAISI
                     KVKNTLKSYNLKIVKKDLTTDSGLNAR"
BASE COUNT         2041 a         1271 c         1320 g         1562 t
ORIGIN      
        1 tgaaattttt tatgcgtatg acgtgtactt tcagaaattt ggcttgaact tcctaaatag
       61 gtatgttata ctggtaaact gaataaggaa atcacccctc cttaaatatt taaggggggg
      121 ggtaattttt ttctattttt acgaggagag agaaataagt tgaaatcgtg ggtaaaagta
      181 gtaagcaagt ttctacttac tttgttagtc atagactcta taacgacaac agctatcgcc
      241 ttatcagaaa cgacttcgga agaagcaatg atacgcgata catacttaaa atcttatcaa
      301 gaggatacca ctaagttatc gctcaccatt gataaggaac aaacgaattc cgaacaatta
      361 gctgttaaac ttaaagttgc ggaaggagta atagatgagc aaggattaac cttgattctg
      421 caaagcggtc tggctttggg tcaaaatgac caaggggagg acatacttcc tgaaggtttc
      481 taccgagatg aggcttataa tgaaaacgat agaaaggttg cagcagcggg tagcgacgca
      541 ctcgcagccg gcctcgaaca attaccggtt tatggcgaag gctactattc actgaaaatc
      601 aaacccagtg ctgaccgctc tatcacctta aatacagacc caagtgacag tagtaagcga
      661 tttgaggagc atgtctttat tttcaaaaag gtttccgagg ttcaaactgg ggaaatggtc
      721 gcagtgacca atgagcgcta tctgacaatc cttaaagaaa atcaatctgt atttaccaac
      781 caagcaacga cggatataaa tgcctcaact gtgattccta gaggtcccgg tagtattacc
      841 attcagctga gagcatatga agagaataac cctgaccctc aggtgccctt gaccgaaagt
      901 gagtttgaga tctcatcggt cgctcatcca gagcaaacga tgaaagggaa gacggactta
      961 aacggaaatg tgacctttga aaatatcgca ctggggtctt acacgataaa gcaactcact
     1021 tccaattcag attatacaat cgctgaacag attgaaacgg tggaactgac agaggcagaa
     1081 acaaccaaga cagttggtgt taccaatact gaaagacaga gtggtggtat tagccgttct
     1141 tctcgaagca ggagagctgt tacagaagca gcttcttatt cgactacaac aactgttaca
     1201 aactcagatg gaacgacaac tacctataca cgcgaagatt ctatcttcaa gtacatcttc
     1261 aagcccatca caatttctat tccagggttc tatcaaagtt attcccaaga tggagtcttg
     1321 gagaaaaagg aggtagtagt cgactcagct actaatacca caaaaatcat ctgggagtat
     1381 acgactacgg taggaggtgc caatagcaat atcacctcta ttagaaatgc cttctccacc
     1441 acaacggact caggtctagg agaaccacga attacctcag tcacaaaaaa tggcactccg
     1501 ataacaacca atacgaccta ctttggaagt tccgacaatt tcaaatcggc aacagataac
     1561 ttaccgattg aaaatgggac ttatgtctat acgattgaaa ctcctgtagt gattccaagt
     1621 gataactata gtttggatta tcgatcagaa gtaacggtta acgctccaaa aggtagtaaa
     1681 cttacctata atggtacatc ggtcactctg gatcaagatg aaatacgtac cttatcaaca
     1741 gcagatacca ttacacttcc ggctcaacaa gatggaggtg tgcttggtga tttaaaagtc
     1801 gagactgtca atacatcgaa cgtcaaccgt accattggta agtatcgtga tggcaatgac
     1861 aaagtcatcg aatggactag ttcgcagtta aatgatactt cagattcaca aacgtttaca
     1921 ttcgacgttg ctttagatag ctcacaagct gtccatgaat acaaagttta catctatgaa
     1981 ccaagcaatg gaacctatac tgaaactaga gctgaaacgg tcattccgat tgggaatcag
     2041 attacggtta gcaatgtacc agcaggtgct atcgctctgg ttaagacagt aacgaatgtt
     2101 acaaacgaga aagtcaacca caccatttca ggagcacaac tagaagctct gaaaggtgat
     2161 ataaaaatcc agaaaaattg ggtaaacgga gcaacaccag taaatacaag cttcactatc
     2221 actggtggta ctgtcaacca aaccaaaaca ttgtctgcag gtcagacgac cattacggta
     2281 aatgatgttc ctaaattctc agggacaggt gcgacagcga tgaagaagcg gattcactat
     2341 gaagtcaatg aaaccgtacc tactggctac attctggcat cggctacctt tgacctcgaa
     2401 agcttgacct accttttcaa taacaaaaaa gacgagtctt catcgacgct tccagggcct
     2461 cctggaactc ctaccaacta cggaattacc tctgttgaac cagttgatat taactatatt
     2521 aagtaccaaa gtggtagtac ggtttggggt ggattcagtg ggtctttgaa acttggtttc
     2581 aaaatcccgc catatgcaca ggaaggggac agctttacag ttcaaattcc agaggaattg
     2641 aaactggatc accctgccaa tccaaatcaa gagtggacac cagtctatga taataacggt
     2701 cgagagattg caaaggtcta tcatacaaaa gatagagaag tcaagtttgt cttgacaaag
     2761 aacgcttact ctgtttcaga atatagcggt tggtatacca tcggtagttc ggcagggaac
     2821 atcattcaaa aaaataatga cacttccttt agaggtcctt atctgacagg tgttgacccc
     2881 gtccttccaa agtggtatga atgggaaaat actagatcaa caattcttac aaaacaactg
     2941 aactttacag gaagttattc ggggggatcg ttctcctatg acaataaaac gattagcacg
     3001 accgggacac tcaatgccac aaataatggc tctagtcaag gggatctcca tgagtttgat
     3061 ggggtgaaca aatacgagta tgagcaaggg gaagattaca tcacgtggga tttgatgttt
     3121 aatactggtg gaggaaatgc tgactatggt gttttagcag atagacataa attctgggac
     3181 tatatccatg aaggaatggc gctttattca gatggtaacg ttgcatctag tattccgaaa
     3241 gatatagagt tctttatcgc agatggaact gcagcggctt cttatgctaa tccagtgaag
     3301 atgactttaa aaggaacttc taccaccaac ggaactaccc aatatcacta cgaagttaag
     3361 ggaacaaata ttggtgtggc tgtatttatt aaaccagagg taaactccaa tcctggcttt
     3421 gataacttcc gttctaccca tacacttgaa ttttattacg aaaacattgg aaataagaca
     3481 atcgtcgctc gtatcaaaat gcgcaaagta agaataacaa atacttacta ctattacaac
     3541 ggcgcgatgc gtgcttacaa tgacggtgtt ggtggtgcac gttatatcta ccgccgtgca
     3601 gcagaaacaa ctgcacgtgg tggtgccatc ccgacagact ggtatagctt aaaattacaa
     3661 aaagttggta tcgaaaatgg tcaaaagaaa gctctcgaag gagcggcatt taccctttac
     3721 gacgccaata aaaagccgta tcaaacggta cgaagcaatg ccaatggtga gtttaccttc
     3781 tcagaactct tagctggaac ctacactttt aaagaaataa gtgtgccacc tggctatatc
     3841 ttagacccga cagaacacac gattgttgta accaatagtc aaaacattac cattgatggc
     3901 aaacaatacg atgccaataa tccaacagaa gttgtcaata ccaagccaac aacgctgcaa
     3961 atcaataagt ttgagcttgg tgaaagtcag ccactaaaag gtgctgtctt caggcttcag
     4021 agcaaaaatg gtggaaatta tgacattact atagggaatg atattcctgc gagtcagttt
     4081 gtttttgcaa acctaacaaa aggcacctat accttgacgg agaccaaagc tccagcgggt
     4141 tataagccga ttactccact agatattgaa gtctatgagg agaatggtga gctaaaaata
     4201 cggaaattaa cagacctgtc caatactcag acaggtgcaa tagaggttgt caatggtaac
     4261 tttagcatcg acgttgttga tgaggacttc agtaccgagt ttacaaaggt aaatgagcaa
     4321 ggtcaaccac ttgcagatgc agtgtttgaa cttcgtcagc tgacacagac aggttataaa
     4381 cgagtgctaa ctgggttgac ctcaaatagc caaggaaaac ttcatgtaga ccatttacaa
     4441 ggaggcacaa cttacgaact ctgggaaact agcgcacctt caggctatag caagccaacc
     4501 acagcggttg ctcgtttcac agtatctgat acaggtgcga ttacatttgc atcaggaagt
     4561 agtcaaatta ttaaccgtcc tccaacttat aaggttaaag tgcagaaagt cgatgcactg
     4621 actggacaaa aagtaacagt gcagacccgc atcggtatca ctgatagcca aggaaatgtc
     4681 attgatgggc aaattgcaaa ctttaccaat ggagagttca gcttccctaa aaactttgct
     4741 ccaggaacat actacatcaa agaagaaaca actccgtctg gttatatcgg cttatcaggt
     4801 ttggtaccat ttaccattcg ggcagatggt gtagtagaag tgtctagtga ctatcttgaa
     4861 ggtattgatg tgacaacgag ctcaccagat acgattacaa taaaagtaaa gaactaccca
     4921 cttggcagat tcaaagttag taaacgtatc aaggggatta gtgatttgac caatcttatc
     4981 actgggcaaa tgacctttac gttgaccaag aatgatgatc caaacgtcac catcgtcaaa
     5041 cagcaagccg caagccaaga ctttatcttt gaaaaccttc agcctggggt ctatactctg
     5101 acagaaactc aagcgccatc cggctatatc aaatctacag aaacttacac gatacaggtc
     5161 gatagagatg gtagcgtgcg cttctaccct aattcagata ctagtagtca ccttgcgact
     5221 ggtttacgtg tcataaagtc agctgacatt gcagctacca caacccacgg ttctagtaca
     5281 gaagataagg cgctagacgg taatctgaca actggagcat tatatcgact gtcgaacgcg
     5341 acattgaatg aaggtcaatg gtggggagta gatctaggtt cggttcaacg tgtgactcag
     5401 attctctttg cccaaggtaa aaatgccaca gacggtagtg accgtgacaa gatggatagc
     5461 tatacccttg agtattcatc agatggcatc acctaccaat cactcggtga cttcacaacg
     5521 cttgacctta ctcaatcggt agatgtctat gcacgataca ttcgtgtacg aaatctacag
     5581 acaggaacaa atagatggtt gggaattcgt gaattacaag taagtgtccg agatgctacc
     5641 caaacgattg aagcaggtgg aagtaatgat acagccaata ttattaaaat tggaaacatc
     5701 gagaatccag agttcaaaat tgagaaagta gatagtaata acaaccaaat ctcaaaacct
     5761 gttaccttca agctctataa agttgacgac aatacaacag ctgatactgt atcgagtgtt
     5821 actcttgatg atagcaatct tgtgcaaacc ttgaccttta caggtcaaag tgacatgact
     5881 aggttaactg cgaccgctct tggaaaatat gttcttgtgg aaactcaggc accagaaggt
     5941 tatgatggtt tggatggtcc agtgttgcta gagttatacg aaacaacgca agcttatgcg
     6001 ttgacgcaac agaaagctgt gacacgcttt agagttttaa gttcaaccaa ttcggtcagc
     6061 atagcagatt tgcctggtgt tgctggggtt cttgcaaatg ctattagcat aaaagtgaaa
     6121 aatacactaa aaagctataa ccttaaaatt gtcaagaaag acttgacaac cgattctggc
     6181 ctcaacgctc gctt
//
LOCUS       DASGAC010000126         6187 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.126, whole genome shotgun sequence.
ACCESSION   DASGAC010000126 DASGAC010000000
VERSION     DASGAC010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6187)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6187)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6187
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.126"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            19..3495
                     /locus_tag="U1335_001676"
     CDS             19..3495
                     /locus_tag="U1335_001676"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012948.1,HMM:TIGR04320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEC10/PgrA surface exclusion domain-containing
                     protein"
                     /protein_id="HEM5232135.1"
                     /translation="MKKENKFQSHGSIRKLKAYGAVGVLSIGMMTTVGTVSAKAEEVT
                     GTAIVATTTTSTEVTQGQVDQAQAKVDTSKTALDQATANVATAEQAVSAAEATYTTAT
                     DVVNDKQAEITTAQEQVDSNPTVAQAQEKVDTASQTVTNTQNEIKETQADVSNLENQV
                     SANETAVANAETAVSNTETAKAQADKQLAQDVADEKTAQDAATSAQSDVNTAKAVVAE
                     KETAVTTATQEVTTKEGEVSTAETKFAEAQAADAKRQADINTAQSEVNTAQTGVNNAQ
                     TQLDNANANLTTVESNISTAQTELDKANLALGSIFTVQLSDTYKENLVKFYEARYITK
                     DTTEMNRIWAILETESKKLLTEMSSAKTLRNLLNSLNAIESNTRVITSTDGSGLNVLT
                     DADRLELAQFAQTTINDLRSQMDITSQALISTGSMDIADMIAKAYLADDWDSSKGHDI
                     PAITRVKDQTGQALDEDFSPIAHTYDSSTYTMADLKIEIAASIRDMMLYDYTSSQHFG
                     HAISLLNLDSKYYDADKANQYFGLSGYTGTKNSGYLLEFTDRGTKAEYGGTPIANPIS
                     KEALQAAVTSAENKLATAQAKLAPAQQAVTTATNKLQAAQGTLKLAQDKLAKAKAVPV
                     QTPAAQKALDTAKANLATAQAKLATAKTELASAKSELATKEATLTSAQNTLRLAQADV
                     ATSRANVETKTQALATAKSNLTTAQSTLLASQKALADEKATLANLQTALATTQNQLKT
                     AKTTLATVQGYANKLNQLKTELEPLLTEQATAKAALDNAKAKLATVTLEKAVAQANYE
                     KALAELKTVQAQYDAYQTYLAAKAEADRLEAERIEAERKAEEARIKAEQDAKAKAEAE
                     KLASEAKAKAEAERLAKEAAEKARLEAEKKAQAEAEAQAKAEEERLAQEAKAQAEKAR
                     LEEEARIKAEQEARAKAEAERLAKEKAEADRLEAERKAEEARIKAEQEAKAKEEAERK
                     AQEEAVRLEAERLVKEAAEKSRLEAELKAQEEADRIASEKAEEEANNQNGTGSEIPVV
                     PTQPKQPTEPIGEPTKPIEEATQPENRFEESLVTEKGKSVSYELPAIDIDELVSDLNV
                     DSKPANTILNPTIQAQTKSVGTAKDSHSNQSGKIATLPETGTADNLLLSVIGMGLSSL
                     GLVISRREKLSK"
     gene            3579..4616
                     /locus_tag="U1335_001677"
     CDS             3579..4616
                     /locus_tag="U1335_001677"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232136.1"
                     /translation="MKKEEWIEVFEEIHGRIPSVEEVLAAEKAGEIVGNLDAEVVSAN
                     YNQAGSARNSSNGYEYRKNSLFSYLKFCYENKKWTILAYFSTLIGLGLCLGGWPGILA
                     ILLSMFMISETGQNMVCKMISAKPIERQEYQSTLVQPIAKIIQQEREQGLILPESIEI
                     RIIQNELPVAYAVGMNRLLVSESLLDSPHFLESKIKFELHRIHNMAPNLLLVVVGANL
                     LLVLAGLIVMLSGSLNKNYGDRRSSFWTGGRSQAANGAILYYGSLAALAAILGLTFLF
                     VKSVVRRDVELSDGFMVRQGLGQVHCLYLDKVNTFDQTMSKKVFELGFPDIDTRIAVM
                     QNQHGVNYQAN"
     gene            4631..5251
                     /locus_tag="U1335_001678"
     CDS             4631..5251
                     /locus_tag="U1335_001678"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEM5232137.1"
                     /translation="MVTKEEWIVSFEQEHGRKPVPKEFVDARQNGEFEVADTESVLVS
                     NVDSVVDAIDLTSEKEATIESNLANDDKVSEPKLEEYAIGSKVFCFNCGKANQTSAET
                     CIQCGTKLSKGRETRSFFSDFTSKLTEVSAIASKKTKELTHNAQANAQIFSEKKKRET
                     LIQALGNAYYERNKEKSGGEFQELFDEIKGIDKLIQDLNESIKQNY"
     gene            5289..>6187
                     /locus_tag="U1335_001679"
     CDS             5289..>6187
                     /locus_tag="U1335_001679"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232138.1"
                     /translation="MITLNNFLKIRSQVELVHRILIISLVLVIWSTFFKVIDNGNGEQ
                     FNMYATVSGLFGPSLFLVVSIIELGAVFTKNEKVFIPLRVVNTLWLFNLLNNISTIVA
                     NDQSTTNRSNKLRTFAEITAGLFTGWSPSITKIRSFNLLGGYSVIRFILFFSILVFLG
                     YLFLRFVKKQELEMGIAQNFLTIQDVLVAFNRDKLITVGTLLLLISPFFKFIALQNSP
                     IGRVPAFATNYIFATAIVVLAGLLLLSFARGNDKAFAYYSIAIALTFIRLNPFYVFQN
                     GELNIGYFLYLAGLGILIYYYLT"
BASE COUNT         2090 a         1174 c         1369 g         1554 t
ORIGIN      
        1 ggagataata agtgtaatat gaaaaaagaa aataagtttc aatcacacgg ttcaattcgc
       61 aaactcaaag cctatggcgc agtcggggtt ctgtctatcg ggatgatgac tactgtaggt
      121 acagttagcg caaaagcaga agaagtgaca gggacagcta ttgtagcgac tactaccact
      181 tcaactgagg taacgcaagg gcaagttgat caagctcagg ctaaagtaga cacgagcaag
      241 acagcacttg atcaagcaac agcaaacgtt gcgactgcag aacaagctgt ttcagcagct
      301 gaagcaactt ataccactgc gactgatgta gtgaacgata aacaagcaga gattaccact
      361 gcccaggagc aagtggatag caatccaact gttgcacaag cacaggaaaa agtggatact
      421 gcatctcaaa ccgttactaa tacacaaaac gagattaaag aaacacaagc agatgtatca
      481 aatcttgaaa atcaagtgtc tgccaacgaa acggctgtag ctaacgccga aacagcagta
      541 tctaatacag agactgccaa agcacaagct gacaagcagt tggcacaaga tgtggcagat
      601 gaaaaaactg cacaagatgc agcaacaagc gcacagtccg atgtgaacac cgcaaaagca
      661 gttgtagcag agaaagagac agctgtgacg acagccactc aagaagtaac tacaaaagaa
      721 ggcgaagtat ccaccgctga aaccaaattt gcagaagcac aagctgctga tgcaaaacgt
      781 caagcagata ttaacactgc tcaatcagaa gtaaacactg cacaaacagg tgtgaacaac
      841 gctcaaactc aattggacaa tgctaacgcc aacttaacaa ctgttgaaag caacatctca
      901 acagctcaaa ctgagttgga taaggcgaac ttggcactcg gttctatctt cacagtgcaa
      961 ctgtcagata cttataaaga aaacttagtt aagttctacg aagctcgcta catcactaaa
     1021 gatacgacag aaatgaatcg tatctgggcg atccttgaaa cagaatcaaa aaaattgttg
     1081 actgaaatgt cttcagcgaa aaccctgcgg aacctgttga attcactgaa tgccattgag
     1141 tccaacactc gcgtcatcac ttcaacagat ggaagtggtt tgaatgtttt gacagacgca
     1201 gatcgtctag agttagctca atttgctcaa accactatca atgatttgcg ttctcaaatg
     1261 gacatcacct ctcaagcgct catctcaact gggtcaatgg acattgcaga catgattgcc
     1321 aaagcgtatt tggcagatga ctgggattct tccaaagggc atgacattcc tgctattact
     1381 cgcgtgaaag atcaaacagg gcaagctttg gatgaagatt tttctccaat tgctcacacc
     1441 tacgattcat caacctacac aatggcagat ttgaagattg agattgccgc atctatccga
     1501 gacatgatgc tgtacgatta cacttcttca caacacttcg gacacgctat ttctctgttg
     1561 aacttagatt ctaaatacta cgacgcagac aaagctaatc agtatttcgg tttgtcaggt
     1621 tacacaggaa ccaaaaactc aggttatttg cttgaattca cagaccgtgg cacaaaggca
     1681 gagtacggtg gaacaccaat tgctaaccca atttctaaag aggctctcca agcagctgtt
     1741 acaagtgctg agaacaaact agcaactgct caagcaaaat tagctcctgc ccagcaagct
     1801 gtaactactg caacaaacaa gttacaagca gcgcaaggta ccttgaaatt ggcgcaagat
     1861 aaattagcta aagcaaaagc agtgcccgtt caaacaccag cggcacaaaa agcattggat
     1921 actgctaaag ctaacttagc aaccgctcag gcgaaacttg ccactgctaa aactgagctc
     1981 gcaagcgcta agtcagagct tgcgacaaaa gaagcaacgt tgacatctgc tcaaaataca
     2041 cttcgattag cacaagctga tgtggcaaca agccgtgcga acgtggagac aaagacacaa
     2101 gctcttgcaa ctgctaaatc taaccttact actgcacaaa gcactttgtt agcttcacaa
     2161 aaagcattgg cagatgagaa agcaacattg gctaacttgc agactgcatt agctactact
     2221 caaaaccaat tgaagactgc taaaactaca cttgcaacag tgcaggggta tgccaacaag
     2281 cttaatcaat taaaaactga gttggagcca ttgcttacag aacaagcaac agctaaagct
     2341 gcattggaca atgctaaagc taaattggca actgtgacac ttgaaaaagc tgtagcgcaa
     2401 gctaactacg aaaaagccct tgctgagttg aaaactgttc aagcgcaata tgatgcttac
     2461 cagacttatc tagcagcaaa agctgaggct gatcgtttgg aagcagaacg tattgaagcc
     2521 gaacgcaaag cagaagaagc acgcatcaaa gctgaacaag atgctaaagc taaagctgaa
     2581 gctgaaaaat tagctagcga agcaaaagct aaagcagagg cagaacgttt agcaaaagaa
     2641 gctgctgaga aagctcgact agaggctgag aaaaaagcgc aagcggaagc agaagctcaa
     2701 gcaaaagcag aagaagaacg cttagctcag gaagctaaag cccaagcaga gaaagcccgt
     2761 ttagaagaag aagctcgcat taaagctgaa caggaagctc gagcaaaagc agaggcagaa
     2821 cgactcgcta aagaaaaagc cgaagctgat cgcttagaag cagagcgtaa ggcagaagag
     2881 gctcgcatta aagcagaaca agaagcaaaa gcgaaggaag aggcagagag gaaagctcaa
     2941 gaagaggcgg ttcgccttga agcagaacgc cttgttaaag aagccgcaga aaaatcccgc
     3001 ttagaggctg agctgaaggc tcaggaagaa gctgaccgca tcgccagtga aaaagctgaa
     3061 gaagaggcta acaaccaaaa tggtacaggt tctgagatac cagtagttcc aactcaaccg
     3121 aagcaaccta ctgaaccaat tggagaacct actaagccta ttgaagaagc aacacaacct
     3181 gaaaatcgat ttgaagaatc attggtaact gaaaaaggta aatctgtttc atatgaattg
     3241 cctgcgattg acatcgatga attagtcagc gacttaaatg ttgatagtaa gccagcaaat
     3301 acaattttaa atccaactat ccaagcccag actaaaagtg ttggaactgc caaggattcg
     3361 cattctaatc aatcaggtaa gattgcaact cttcctgaaa cagggacagc cgataactta
     3421 ttgctttcag taattggcat gggcttgtct tcgcttggac tagtaattag cagaagagaa
     3481 aagctttcta agtaatacgt tttgcttagt tctctggtat gaggttgcgt gaggcatata
     3541 atgtgttatt cgtatctttc aaggagttgg gggttaatat gaagaaagaa gaatggattg
     3601 aggtatttga agagattcat gggcgaatac ccagtgttga agaggtttta gcagccgaaa
     3661 aagctggaga gatagtcggt aatcttgatg cagaagttgt ttctgcaaat tataatcaag
     3721 caggctcagc acgaaattcg agtaatgggt acgaatatag gaaaaattct ctgttttcat
     3781 acttgaagtt ttgttatgag aataagaagt ggaccatctt agcttacttc agtacattga
     3841 taggtctagg tttatgccta gggggttggc ctgggatact agccatattg ttatcgatgt
     3901 ttatgatttc agaaacaggt caaaacatgg tctgtaagat gattagtgcc aagccaatag
     3961 aacgccaaga atatcagagt acacttgttc aaccaattgc aaagataatt caacaggagc
     4021 gggagcaggg gctaatctta ccagagagta tcgaaattag gataattcaa aatgagttac
     4081 cagttgcgta tgctgttggg atgaatcggc tcttagtatc tgaaagttta ctagatagtc
     4141 ctcatttttt agaatctaaa attaagttcg aacttcatcg tattcataat atggcaccaa
     4201 atttgctact cgttgttgtt ggagctaatt tactattggt gttggctgga ctaatcgtca
     4261 tgttgtctgg gagtttgaac aaaaactatg gtgatcgtag aagttcattc tggacaggtg
     4321 gtaggtcaca agccgctaat ggagctattt tatactacgg aagtttagca gccttagctg
     4381 caattctcgg actaaccttt ctttttgtta aatctgttgt aagacgtgat gtcgaattgt
     4441 ctgatggatt tatggtaagg caggggttgg ggcaggtaca ttgtttatat cttgataagg
     4501 ttaatacatt tgatcaaacg atgtctaaga aagtctttga actaggtttt ccagatatag
     4561 acactcgaat tgcggtgatg caaaatcagc atggcgtcaa ttaccaggct aattaaagaa
     4621 aggagaagtt atggttacta aggaagaatg gatagtatcc tttgaacaag aacatggtcg
     4681 caaacccgta cctaaagaat ttgttgatgc ccgtcagaat ggagagtttg aagttgcgga
     4741 tacagaaagc gttcttgtta gcaatgttga ttcagtggtt gatgcaatag acttgacgtc
     4801 cgaaaaggaa gcgacgatag aatccaatct tgcaaatgat gataaggtaa gtgagccgaa
     4861 actggaagag tacgcaattg gttccaaagt attttgtttt aattgcggaa aagcgaacca
     4921 gacaagcgct gaaacgtgta ttcaatgtgg gacaaagtta tcgaagggga gagagaccag
     4981 gtctttcttt tcagacttta cctctaaatt gacggaagta agtgccattg ctagtaaaaa
     5041 aacgaaggaa ctcactcata atgcccaagc caacgctcag attttctcag aaaagaaaaa
     5101 acgagagact ctgatacaag cattggggaa tgcctactat gaaaggaaca aagagaagtc
     5161 aggtggcgag ttccaagagc tttttgatga aataaaaggc attgataaac tgattcaaga
     5221 ccttaatgaa tcaatcaaac agaattatta aggtgttagc tgaatattgt tgggataatg
     5281 gaggagaaat gattacgcta aataattttt taaagataag gtcgcaagtt gaactggttc
     5341 ataggatctt gattattagc ctggtgcttg tgatatggtc aacatttttt aaagtaattg
     5401 acaatggaaa tggcgaacag ttcaatatgt atgcaacagt aagtgggctc tttggaccga
     5461 gcttattctt agtggtgtca ataattgaat taggggcggt ttttacaaag aatgaaaagg
     5521 tatttattcc tttgagagta gtcaatacat tgtggctttt taacctacta aacaatattt
     5581 cgactattgt ggcgaatgat caatcaacga ccaaccgttc aaataaactt cgaacatttg
     5641 ctgaaattac agcaggtctt tttacaggat ggtctccctc aattacaaaa atacggtctt
     5701 ttaacttgtt aggtggctac tcagtgatac gcttcattct tttctttagt attttggtgt
     5761 tcctcgggta cctattttta aggtttgtga aaaaacaaga attggaaatg ggaatcgctc
     5821 aaaacttcct aaccattcag gatgtactgg tggcctttaa cagggataag ctaatcacgg
     5881 ttggcacact attgttattg atttcaccat tctttaaatt tattgccttg caaaattcgc
     5941 ccattggacg agtcccagca tttgctacaa attatatttt tgcaacagct atcgttgtat
     6001 tggctggtct tctattgttg tcatttgcac gtggtaatga taaagcattt gcatactata
     6061 gtattgctat cgcacttact tttattcgac ttaatccctt ttatgttttt cagaatgggg
     6121 aactgaatat aggatatttt ctatacctag caggattagg cattctaatc tattattatt
     6181 tgacaaa
//
LOCUS       DASGAC010000127         6184 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.127, whole genome shotgun sequence.
ACCESSION   DASGAC010000127 DASGAC010000000
VERSION     DASGAC010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6184)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6184)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6184
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.127"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(1..207)
                     /gene="tnpA"
                     /locus_tag="U1335_001680"
                     /pseudo
     CDS             complement(1..207)
                     /gene="tnpA"
                     /locus_tag="U1335_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148688.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
     gene            complement(390..1895)
                     /gene="pyk"
                     /locus_tag="U1335_001681"
     CDS             complement(390..1895)
                     /gene="pyk"
                     /locus_tag="U1335_001681"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008809276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEM5232139.1"
                     /translation="MNKRVKIVATLGPAVEIRGGKKFGDDGYWGESLDVEASAQKIAQ
                     LITEGANVFRFNFSHGDHQEQGERMATVRRAEEIAGKKVGFLLDTKGPEIRTELFEGD
                     AKEFSYTTGEKIRVATKQGIKSTREVIALNVAGGLDVFDDVEVGKQVLVDDGKLGLKV
                     IEKDAEKREFIVEVENDGVIAKQKGVNIPYTKIPFPALADRDNADIRFGLEQGLNFIA
                     ISFVRSAKDVEEVRNILKETGNEHVQLFSKIENQQGIDNIDEIIEASDGIMIARGDMG
                     IEVPFEMVPVYQKMIITKVNAAGKAVITATNMLETMTEKPRATRSEVSDVFNAVIDGT
                     DATMLSGESANGKYPVESVRTMATIAKNAQTLLNEYGRLNSDHFNRASKTEVIASAVK
                     DACHSMNIKLVVTVTETGYSARSISKYRPDADILAVTFTEKVQKSLMLNWGVIPVVTN
                     RPDSTDDMFDLAERIAKEQGLVEAGDDIVIVAGVPVGVAGSTNTMRVRTVK"
     gene            complement(1962..2972)
                     /gene="pfkA"
                     /locus_tag="U1335_001682"
     CDS             complement(1962..2972)
                     /gene="pfkA"
                     /locus_tag="U1335_001682"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005590682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HEM5232140.1"
                     /translation="MKRIAVLTSGGDAPGMNAAIRAVVRQAISEGMEVYGINEGYAGM
                     VAGDIHELSARSVGDIISRGGTFLGSARYPEFAKLEGQLKGIEQLKKHGVEGVVVIGG
                     DGSYHGAMRLTEHGFPAIGVPGTIDNDIVGTDFTIGFDTAVTTAMDAIDKIRDTSSSH
                     RRTFVVEVMGRHAGDIALWAGIASGADVIVVPEEDFNINDIVDRIKAGYDNGKKHSII
                     VLAEGVMPAAQFAEELKAAGDTSDLRVTELGHIQRGGSPTARDRVLASRMGAHAVKLL
                     KEGRGGLAVGIRNEQMVENPILGTAEEGALFSLTAEGKIVVNNPHKADLDLAELNRNL
                     SI"
     gene            complement(3057..6167)
                     /locus_tag="U1335_001683"
     CDS             complement(3057..6167)
                     /locus_tag="U1335_001683"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEM5232141.1"
                     /translation="MLAQLDTKTVYTFMDSMVTIEEYVRRAKSLGYQALGMMDKNSLY
                     AAYSFMETCQKAGIQPIIGCELDWQLEGQEREVTTQLIALTTRGYRNLLKISTAKMTG
                     QDDFETIRQYLVDIAVVVPYFSGIEHLELGVNYYIGVTVDTPVQDFKQAILPIHTVRF
                     FEEEQLESLQVLHAIRDNIPLNQVTDIDSRQKLLSADSLTNLFSNRFPQAVDNLRDLV
                     AGISYQLNTDLKLPRFNRDRPAVEELYERSYQGLEEKGLTNSLYKERLEKELSIIHQM
                     GFDDYFLIVWDLLRFGRSQGYYMGMGRGSAVGSLVAYALNITGIDPVKHNLLFERFLN
                     AERYSMPDIDIDIPDIHRADFIRYVRDRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGT
                     PEYELSNITKKISFRDSLTSAYQRNAAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIH
                     AAGIVMSDEDLTDTIPLKIGDDMLVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEG
                     VRERYQQEIDIAKIDLEDKKTLELFAAGRTKGIFQFEQPGAINLLRRVKPGRFEDIVA
                     TTSLNRPGASDYSDNFVKRKHGQETVDLLDPTIAPILQPTYGIMLYQEQVMQIAQVYA
                     GFTLGKADLLRRAMSKKNAQEMQAMEAEFLQGALKNGHAEENAREIFGMMAKFAGYGF
                     NRSHAYAYSALAFQMAYFKSHYTDVFFDVMLNHSSSAYIEDAMQFDFEVARLTINNIP
                     YHDKFDKSKVYLGLKTLKGLPKDLALWILDHRPYKSVEDFILRLPDNFKKKDLLIPLI
                     QIGLFDDFDANRKKIIENLDNLFVFAEAIGTFFAEESYSWTDVEDYSDSEKFMLEQEL
                     LGVGISPHPLVKICRESKRALTDLADLMVASRVTILVQIQSIRLIRTKKTGEQMAFLQ
                     VTDTKRKLDVTLFPESYRQFSQDLREGAIAYMTGRVQERDGQMQLILEQLEPVSLEKF
                     WILLENKEHDHAVARILEKYKGSIPVILHYQDSNQTIQAEHYKVLKTPQLEEELSEFV
                     MKTIFR"
BASE COUNT         1768 a         1420 c         1090 g         1906 t
ORIGIN      
        1 gaatactgac taacatgtga acatggtctg gcatcagatg accttcgata atttcaacac
       61 ctttataagt acacaaacgt cggaatattt ctcccaaact acttcgatat tgattataga
      121 tgatttttcg tctatactta ggtgtgaaga caatgtggta gaacacagcc actttgtatg
      181 tgataaacta tgtgcctttt gcgccatatt tttctccttt cgctttacaa taggcttgaa
      241 cacctttatt gtatcgcgtt tggagttttt tggtataacc ttcgtcgcac acccgcatag
      301 cgggtggttt atttgtcacg caccttacgg agcgtgacgg actaaaagtc acataatcac
      361 gccaaaaagg tccaagagga cctttttgat tattttactg tacgaacacg catagtgttt
      421 gttgaacctg caacacctac aggcacacca gcaacgataa caatatcatc tcctgcttca
      481 acaagacctt gttctttggc aatgcgttca gccaaatcaa acatatcgtc agttgaatct
      541 ggacggtttg ttacaactgg gataacaccc cagttaagca tcaatgattt ttgtactttc
      601 tcagtaaatg ttactgccaa gatgtcagca tctggacggt atttagagat tgaacgagct
      661 gagtaaccag tttcagtaac tgttacaacc aacttgatgt tcattgagtg acaagcatct
      721 tttactgcag atgcaataac ttctgtttta gatgcacggt taaagtgatc agagttcaaa
      781 cgaccgtact cattcaatag agtttgtgca tttttagcga tagttgccat tgtgcgaact
      841 gactcaactg ggtatttacc gtttgcagac tcacctgaaa gcattgttgc gtcagtaccg
      901 tcgataactg cgttgaatac gtcagatact tcagaacgag ttgcacgtgg tttttcagtc
      961 attgtttcca acatgtttgt tgctgtgata actgctttac cagctgcatt cacttttgtg
     1021 ataatcattt tttggtaaac tggaaccatt tcgaatggta cttcgatacc catgtcacca
     1081 cgagcaatca tgataccatc tgaagcttca atgatttcat caatattgtc gataccttgt
     1141 tggttttcga tttttgagaa caattgaacg tgctcattac cagtttcttt aagaatgtta
     1201 cgaacttctt caacatcttt tgctgaacga acgaatgaaa ttgcgatgaa gttcaaacct
     1261 tgttccaaac cgaaacggat atcagcgttg tcgcggtcag caagagctgg gaaaggaatt
     1321 ttagtataag gaatgtttac acctttttgt ttagcgataa caccgtcgtt ttcaacttca
     1381 acaataaatt cacgtttttc agcatctttt tcgatgactt taagacctag tttaccatcg
     1441 tcaacaagaa cttgtttacc aacttcaaca tcatcaaata catccaaacc acctgcaacg
     1501 ttcaatgcaa tcacttcgcg agttgactta ataccttgtt tagttgctac gcggattttt
     1561 tcaccagttg tgtatgaaaa ttcttttgca tcgccttcaa acaattctgt acggatttct
     1621 ggaccttttg tatccaacaa gaaaccaact tttttaccag caatttcttc cgcacgacgc
     1681 acagttgcca tacgctcacc ttgttcttgg tggtcaccgt gtgagaagtt gaaacggaat
     1741 acgtttgcac cttcggtaat caattgagca attttctgtg ctgatgcttc tacatcaagg
     1801 ctttcacccc agtaaccatc atcaccgaat ttttttccac cacggatttc taccgcagga
     1861 ccaagggttg caacgatttt tacacgttta ttcatcttaa caaaactcct ttttatttaa
     1921 tggtcttatg acccttaata acactttaat gaaatgtcaa attagattga caagttacgg
     1981 ttcaattcag ccaaatccaa atctgcttta tgtggattgt tcacgacaat cttaccttct
     2041 gcagtcaagc tgaacaatgc accttcttct gcagttccaa gaattggatt ttcaaccatt
     2101 tgctcgttac ggatacctac tgcaagacct ccacggcctt ctttaagcaa tttaacggca
     2161 tgagcaccca tacgagaagc gagtacgcga tcacgcgctg ttggagaacc accacgttgg
     2221 atatgaccaa gttctgtcac acgaagatca cttgtatcgc ctgctgcttt caattcttca
     2281 gcaaactgtg cagctggcat aacaccttca gctaaaacaa tgatgctatg tttcttacca
     2341 ttgtcgtagc ccgctttaat acggtcaaca atatcgttga tattgaagtc ttcttctgga
     2401 acaacgataa catctgcacc agaagcaata ccagcccaaa gagcgatgtc tcccgcatga
     2461 cgtcccatta cttcaacaac gaaagtacga cggtgacttg atgaagtatc gcggatttta
     2521 tcaatcgcat ccatagcagt tgttacagct gtatcaaaac cgattgtaaa atctgtacct
     2581 acgatgtcat tatcaattgt accaggtaca ccaatagctg ggaaaccatg ctccgtcaag
     2641 cgcattgctc cgtggtaaga accatcgcca ccgataacaa ctacaccttc gacaccatgt
     2701 tttttcaatt gctcaatccc tttaagttgc ccttctaatt tggcaaattc tggataacga
     2761 gctgaaccaa ggaatgttcc tccgcgtgaa ataatatcac ctacagaacg tgcagacaat
     2821 tcatggatat cacccgcaac catacctgcg taaccttcgt tgattccata aacttccatt
     2881 ccttctgaaa ttgcttggcg aacaactgca cgaatagcag cgttcatacc aggggcatca
     2941 ccaccactgg tcaaaacagc aatacgtttc attcgttaat gctcctttaa cttttcattt
     3001 taactgccct attataacat acttaaccta aacttgcttg actttttgct atttttttat
     3061 cgaaaaatcg ttttcataac aaattcactt aactcttctt ctaattgagg cgttttcaaa
     3121 accttataat gctccgcctg tatggtctga ttggaatctt gataatggag aattaccgga
     3181 atacttccct tatatttttc caaaatccga gcaactgcat gatcatgctc cttgttctcc
     3241 aacaaaatcc aaaatttttc aagactgact ggctccaatt gttctaaaat cagttgcatt
     3301 tgtccatctc gctcctgtac ccttcctgtc atgtaggcaa ttgctccttc tctcaggtct
     3361 tgagaaaatt ggcgatagct ttctggaaag agtgtcacat ccaactttct cttggtatct
     3421 gtcacttgga gaaaggccat ctgttccccc gttttcttgg tccgaatcaa gcggatggat
     3481 tgaatttgca ccaggatggt cactcgacta gctaccatta aatcagctag gtctgtaaga
     3541 gctcgcttgg actcacggca gatttttacc aagggatgcg gactaatgcc aacacctagc
     3601 aattcttgct ctagcataaa tttttcgctg tcgctgtagt cttctacatc tgtccaacta
     3661 taactctcct ctgcaaaaaa tgtaccaatc gcctctgcaa agacaaagag attgtctaga
     3721 ttttcaataa tctttttacg attggcgtca aaatcatcaa ataaaccaat ctgaataaga
     3781 gggattagta aatctttttt cttgaaatta tctggcaagc gcaaaataaa atcttctaca
     3841 gacttatagg gacgatgatc caatatccat aatgctaaat ctttaggcaa accttttagt
     3901 gtttttaatc ctaggtagac cttactttta tcaaacttat cgtgataagg aatattgtta
     3961 atcgtgagtc gagctacctc aaagtcaaac tgcatcgcat cttcaatata agcactgcta
     4021 gaatgattga gcatgacatc aaaaaagaca tccgtatagt gactcttgaa ataggccatt
     4081 tgaaaggcta aggctgaata agcataggcg tggctacggt taaaaccata accagcgaac
     4141 ttagccatca tgccaaatat ttcccttgca ttctcttcag catgtccgtt tttcagtgct
     4201 ccctgtaaaa attccgcttc cattgcctgc atttcctggg cattcttttt agacatcgcc
     4261 ctacggagta aatccgcctt gccaagcgta aatcctgcat agacctgtgc aatctgcatg
     4321 acctgttcct gataaagcat gataccataa gtcggttgta aaataggagc aatggttggg
     4381 tccaacaaat caactgtctc ttgtccatgt ttgcgtttta caaagttatc cgaataatca
     4441 ctagcccccg gtctattcaa actcgttgtt gcaactatat cttcaaatcg accaggtttg
     4501 acccttcgaa gcaggttaat cgcaccaggc tgttcaaatt gaaaaattcc cttagtccga
     4561 ccagcagcaa aaagttccaa ggttttcttg tcttctaaat ctatcttggc aatatcaatt
     4621 tcctgctgat aacgttcacg tactccttct gccatttttt gcacaaaggt cagatttcgt
     4681 aagccaagga aatccatctt caacagaccg ttcgcctcaa cagcatgtgc atcatattgg
     4741 gttaccagca tgtcatcccc tattttaaga gggatggtat ctgtcaagtc ctcatcactc
     4801 atcactatcc ctgctgcatg gatagaagtc tgtcggggtt gcccttcaat ttgttgagca
     4861 atcgcaaaag ctttttggta ctctatctta ctattgataa tctgacgaaa agcggcattt
     4921 cgctgatagg cagaagtaag actatcccta aatgaaattt tcttggtaat attacttaac
     4981 tcatattcag gtgttccgaa acgcttaaat acatcacgaa tggcctgctt agctccaaaa
     5041 gtcgagtagg ttacaatttg cgcagcatgg gttgaaccat aacgatctcg tacataacga
     5101 ataaaatctg ctcgatgaat atctggaata tcaatatcaa tatcgggcat tgaataacgt
     5161 tcagcattga gaaagcgttc aaatagaaga ttatgcttaa caggatcaat acctgtgata
     5221 tttaaggcgt aggcaacgag gcttccaaca gctgaaccgc gccccattcc catgtagtac
     5281 ccttggctac gtccaaaacg aagtaggtcc catacaatca agaaataatc atcaaatccc
     5341 atttgatgaa taatggataa ttccttttcc aagcgttctt tatatagtga attagtcaag
     5401 cccttctctt ctaatccttg ataggagcgc tcgtataatt cttccactgc aggtctgtca
     5461 cgattaaaac gcggcaattt taaatctgta tttaattgat aagaaatccc tgcaaccaag
     5521 tcacgtaaat tatcaaccgc ttgcggaaac cgattagaaa atagattggt taagctatca
     5581 gccgataaaa gcttttgtcg actatctata tctgtaactt gattaagtgg aatattatct
     5641 cgaatagcat gtagaacctg tagactttcc aattgttcct cttcaaaaaa acgaaccgta
     5701 tgaattggga gtatcgcttg cttaaagtct tgaactggtg tatcaaccgt cactccgata
     5761 taatagttaa cacctaactc aaggtgctca atgccagaaa aataaggaac aaccactgct
     5821 atgtcgacta aatattgacg aatggtttca aaatcatctt gtcctgtcat cttagcagtc
     5881 gaaattttca atagattgcg ataacctctg gttgtcagag caatcaactg agttgtcact
     5941 tctcgctcct gcccctccaa ctgccagtcc aattcacagc cgatgattgg ctgtattcct
     6001 gccttctgac aagtttccat aaaactgtaa gccgcatata gactattctt atccatcatc
     6061 cccaaggctt ggtagcccag cgacttagct cttcttacat attcttcaat ggtcaccatg
     6121 ctatccataa aggtatagac ggtttttgta tctagttgtg ccagcatggt cttctccttt
     6181 ttat
//
LOCUS       DASGAC010000128         6162 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.128, whole genome shotgun sequence.
ACCESSION   DASGAC010000128 DASGAC010000000
VERSION     DASGAC010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6162
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.128"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..805
                     /locus_tag="U1335_001684"
     CDS             <1..805
                     /locus_tag="U1335_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000564846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ISAs1 family transposase"
                     /protein_id="HEM5232142.1"
                     /translation="DGKTIRGNRGKYQSPTHIVTAYDGGNRLSLGQVAVEDKSNEITA
                     IPRLLRQLDLRKSVVTIDAMGTQTDIVDVIIGGKGDYCLAVKGNQGNLHEDIDLYFRD
                     AKLLSKLTAKGCHYQTIEKAHSQIEVRDYWISHDVKWLSQRHPKWKKLRGIGMAKNTI
                     DKDGIITEEVRYFILSFKGDVQTFSQVVRGHWSVESLHWLLDVVYREDKNQTLDKRVA
                     FNLNAIRKACLHLLQTMTFPKEKLSYRRKQRYISVHLEDYLPQLFGKRR"
     gene            971..2284
                     /locus_tag="U1335_001685"
     CDS             971..2284
                     /locus_tag="U1335_001685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232143.1"
                     /translation="MKKTLFAGIVTAMSALSLLFVGQSAQADQTIYRLYNKQNGEHLY
                     TTDKNEKDVLFTQHGWGYEGEAWYAPDPGQGSPVYRLYNAGLQNHLYTTDTNEVKVLT
                     SKYGWTLDNNGQPVFYSGGSAKIYRVYNQNLRGLHHWTTDENEYSVLPRHGWQQEGVK
                     LYGNRVGVPIQTQYYQYSPVASQPTPPSQSTGSAQTSQPAQGNNQLPSTIPSGSATIA
                     NTESNHTIEADVALTGSGTGYHAKLVMAAPDAAVSFGLQFDTAAVAPYTGKTAFLIEN
                     IGSNNVGGQYYHRANYLASLNTTYRLMLTLQKDGSYVGYVNGTEVVRGRNAVLADRSD
                     IYLRVEGAARKTGDSITAHFSAIKLKQHGIYTERRWPATPQFNIANGILTKIDGVQVR
                     NTASDTRTINNNVVFTGTLTGLPQYADWDTAGYYDKVSGLIQFIN"
     gene            2521..2979
                     /locus_tag="U1335_001686"
     CDS             2521..2979
                     /locus_tag="U1335_001686"
                     /inference="COORDINATES: protein motif:HMM:NF024940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5232144.1"
                     /translation="MVKELTSSQIEELKQALKEKSNARHHRKIQALILYSEYHNLRSV
                     AKSVGFVHQTVRNLLNRYLDGGLQALLNENRGGRRRSYMTHEEEEAFLKEQLSSALNG
                     EFVTVSTLFEAYQEKVGHKTTREGFYALLKRHGWVKESRDSLRWEIKLTQ"
     gene            complement(3892..6159)
                     /gene="glgP"
                     /locus_tag="U1335_001687"
     CDS             complement(3892..6159)
                     /gene="glgP"
                     /locus_tag="U1335_001687"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan family
                     phosphorylase"
                     /protein_id="HEM5232145.1"
                     /translation="MINLQNFVQSMYAKRIEDCTDQELYYALLAFTKQHSEAKYTNDQ
                     KKKVYYISAEFLIGKLLSNNLINLGLYDEVKSQLVAAGKDLIAIEDVELEPSLGNGGL
                     GRLAACFLDSIASLGLNGDGVGLNYHFGLFRQLFEYHQQSAVPNEWITPRSWLTESPI
                     SYQVPFANFTLTSKLYDIDVPGYKTERKNRLRLFDLGSVDDNIIYDGIEFDKEDIFRN
                     LTLFLYPDDSTDEGKVLRIFQQYFMVSNAAQLLIDEAIAKGSNLHDLPDYAVVQINDT
                     HPSLVIPELIRLLELRGISFDEAVEIVKKMTAYTNHTILSEALEKWPLDFLNRVVPHL
                     VPFIEELDRRAKEVKDDPAVNIIDEHGRVHMAHMDIHYGYSINGVAALHTEILKTSEL
                     KAFYELYPEKFNNKTNGITFRRWLMHANPSLASYLDGLLGHGYHHDASELEKLLEYKN
                     DKELKYWLEKNKQHNKRKLQRHIAKTQGVEVNPESIFDVQIKRMHEYKRQQMNVLYVI
                     HKYLDIKAGNIPARPLTVFFGGKAAPAYTTAQDIIHLILVLSQVIKNDPEVAPHLQLV
                     MIENYNVTEASFIIPAADISEQISLASKEASGTGNMKFMLNGALTIGTDDGANVEIHE
                     LVGDENIYIFGQDSQTVIDHYANGTYHPYAFYEREAIRPLIDFITSDTIRHAGGIDER
                     LWRLQDNLKHNDHFMTLLDLEDYISTKEQMLADYEDRDSWLEKVIVNIAKAGFFSSDR
                     TIQQYNEDIWHLEAK"
BASE COUNT         1888 a         1242 c         1290 g         1742 t
ORIGIN      
        1 tgacggaaaa acgattcggg ggaaccgagg aaaataccaa tcccctactc atattgtcac
       61 tgcctatgat ggtggtaatc ggcttagtct tggtcaggta gctgttgagg ataaaagtaa
      121 tgaaatcaca gccattcctc gcctcttgcg tcagctagac cttcgtaaga gtgttgtcac
      181 gattgatgcc atgggaacac agactgatat agtggatgtg attatcggcg gtaagggtga
      241 ttattgcttg gcagtcaaag gaaatcaagg caatctccat gaggatattg acctctattt
      301 tcgtgatgcc aaattgttat ctaagttgac ggcgaaaggc tgtcattatc agaccatcga
      361 aaaggcacac agtcagattg aggtgaggga ctactggatt tctcacgatg tgaaatggtt
      421 gagtcaacga catccgaaat ggaaaaaact tcgtggaatt ggtatggcta agaataccat
      481 tgataaagac ggtatcatca cggaagaagt tcgatacttt atcctcagtt tcaagggtga
      541 tgtgcagact ttttcacagg ttgttcgcgg tcattggtcg gttgagagcc tacattggtt
      601 gttagatgtg gtttaccgag aagataagaa ccaaacctta gataaacgag tggccttcaa
      661 tctgaacgct attcgtaagg cttgtcttca tcttttacaa actatgacct tccctaagga
      721 gaagctgagt taccgtcgca aacaacgcta tatttctgtc catttggagg attatttgcc
      781 acaattattt ggaaaacgca gataatgagg tagtgcaaaa gtaggaattc ggtttcgaat
      841 ggcaacattc ccgtccaaaa ggagagaaga aatttttcat gcgtatgatg tggtcatcat
      901 atgaagaggt gttgacaaaa aaatttttat gtattaaaat gttaaaatga aaaaataaaa
      961 ggagatgtgt atgaaaaaga ccctatttgc cggaattgtt actgctatgt cagccctatc
     1021 tttattattt gtaggtcaat ctgcccaagc agatcaaacg atttatcgct tatataataa
     1081 gcagaatgga gagcatctct atacaactga caaaaatgaa aaagatgttt tgttcaccca
     1141 gcatggttgg ggatatgaag gtgaggcgtg gtatgctcct gacccaggtc agggtagtcc
     1201 agtctatcgc ctttataatg ctggtttgca aaatcatttg tatacaacag ataccaacga
     1261 agttaaggtg ctgactagca agtatggctg gacacttgat aacaatggac agccggtatt
     1321 ctattctgga ggcagcgcga aaatctatcg tgtctataac caaaatctac gaggacttca
     1381 ccactggact actgatgaga atgaatacag cgttctacca agacatggtt ggcaacaaga
     1441 aggtgttaaa ttatacggga atcgtgtcgg tgttccgatt caaacccaat attaccaata
     1501 ttctcctgta gcaagccaac ctacccctcc aagtcaatct actgggtcag cccaaacatc
     1561 acaaccagcc caaggaaata atcagctacc atcaactatc ccgtcaggca gtgctacaat
     1621 tgccaataca gaatcaaatc ataccattga agcggatgtt gctttaacag gatctggtac
     1681 aggttatcat gctaaactcg tcatggctgc cccagacgca gctgtaagtt ttggtttaca
     1741 atttgacact gcagcagttg caccgtatac aggtaaaaca gccttcttga ttgagaatat
     1801 aggcagcaat aatgtaggag ggcaatatta tcatcgtgct aattatcttg ccagtctcaa
     1861 cactacctat cgtttgatgt tgacactgca aaaagatggt agctatgttg gttatgtgaa
     1921 cgggacggaa gttgtacgtg gtcgaaatgc agttttagct gatcgttctg atatctatct
     1981 acgtgtcgaa ggggcggcgc gaaagacggg tgattctata acagcgcatt ttagtgctat
     2041 caagttaaaa cagcatggca tttataccga gagaagatgg cctgcgacac ctcagtttaa
     2101 tatcgctaac ggcatcctta caaaaataga tggagtacaa gtgagaaata cggcaagtga
     2161 tacgcgtacg ataaataaca atgttgtctt cactggaacc ctaacaggtt tacctcaata
     2221 cgccgattgg gatacagcag gctattatga caaggtgtca ggtctgatcc agtttatcaa
     2281 ttagtagtct ttttcagata tagctattgg gttcttgtat taaagtatca tatattccaa
     2341 agtcgcaatg ataggctttg gattttttat agaagggctt aagttgttca attcctatgt
     2401 gaatatcatt gcgatcagag agggttaagt gtttgttttt cattgtcagt taccaacttg
     2461 tcccgtagta agttctacct catacttaac aaaaatcata aatagcgata caatagtttt
     2521 atggtaaaag aacttacatc ctcccaaatc gaggaattaa aacaggccct taaagaaaaa
     2581 agcaatgctc ggcatcatag aaaaattcaa gcccttattc tctactctga ataccataat
     2641 ttaagatctg tagccaaatc agtgggcttt gtccatcaaa ccgtacgaaa cttattgaat
     2701 cgctatctag atggaggttt gcaggcactt cttaatgaaa accgtggcgg acgtcgtcgc
     2761 tcttatatga ctcacgaaga agaggaagcc tttctcaaag aacaactctc atctgccttg
     2821 aatggagaat ttgtgactgt ctctactctc tttgaggctt atcaagaaaa agttggtcat
     2881 aaaacgactc gagaaggatt ttacgcccta ctaaaacgcc atggttgggt caaagaatca
     2941 agagattctt tgaggtggga gataaagctt acgcagtaag caacaaaagt tagtcctcgt
     3001 cctcaacatc ctaaaaaagc agacgcaaaa accattttag cgtctaaaaa taaaatcctt
     3061 attcaaggag aaagctagta agcgcttaat caatgaaaaa tcctaccaga acatccgcct
     3121 tcgctctaca atttctaagc tcaggaaaaa gtctgctccc agcagacttt tttgtatcaa
     3181 gatgaggcgg gtttaagaat aagatattta gaacattaaa tgaagtcatt gataaacttc
     3241 aggaagttat tcaaagcttg tctacttctc aactaaaatc aattgtacat agagagtgga
     3301 cttccgctat ttttgatttt aaatgagtat tatttctttg ggaatttagc cacctaaaaa
     3361 aaatcgcacg ttgtcaagtc aagtgcaaca agttcattga tgactagagt tccagaattc
     3421 aagaagaaag tatctatttc gatatcacga taaaagaaaa attacatgaa ctcctttatc
     3481 tgctttttaa acatcgctat gtaaacagac actattctga tgatacctac caaaaatgcc
     3541 aaaaactcaa ggaattgttc cgattatcat tcacaaatta attgcaactc actttagaga
     3601 tgggagcggg aaagaactcg accaagataa aaagagttcg tcaacaattt ttcgttttaa
     3661 gttgttgagc tgaaacagtc tatccccaga ctgtttcact cccacccccg catagctcca
     3721 acagtcagag tagtgactgt tggaggttgg aaatgaagcg aactctgttc gcatcagtcg
     3781 taatggccag atttggagtg caaaacacga acaaatctgc caatcaacca ctgcgctgag
     3841 atgttaacac gaactctgag tagtggtcct gggctttttg cccagcctct tctatttcgc
     3901 ttccaaatgc cagatatctt cgttgtactg ttgaatcgta cggtcagatg agaagaatcc
     3961 tgctttagcg atgttgacga tgactttttc caaccagctg tcgcgatctt cgtagtctgc
     4021 taacatctgc tctttagtcg agatataatc ttccaagtca agcaaggtca tgaagtggtc
     4081 attgtgctta aggttatcct gtaagcgcca gaggcgttca tcgataccac cagcatgacg
     4141 aatggtgtca gaagtgatga aatcaatcaa tggacggatg gcttcacgtt cgtagaaggc
     4201 atatggatgg taggttccat ttgcatagtg gtcgataaca gtctggctat cttgaccgaa
     4261 gatgtagata ttttcatcgc cgactaattc atgaatttcc acgttggcac cgtcatctgt
     4321 accaatagtc aaggcgccgt tgagcatgaa tttcatgtta ccagtaccag atgcttcttt
     4381 agatgcaaga gaaatttgct ctgaaatgtc tgccgctgga atgatgaagc tggcttccgt
     4441 tacgttgtag ttttcaatca tgaccaactg caaatgtggt gccacttctg ggtcattttt
     4501 gataacctgt gacaatacca aaatcaaatg aatgatgtct tgtgctgtag tataagctgg
     4561 tgccgctttt ccaccaaaga agacagtcaa tggacgcgcg gggatattcc cagccttgat
     4621 gtccaaatac ttgtgaatga cataaagaac attcatttgt tgacgcttgt actcgtgcat
     4681 tcgcttgatt tgcacgtcaa agatggactc tggattaact tcaacacctt gagttttagc
     4741 aatatgacgt tgtaatttac gcttgttgtg ttgcttgttt ttttccaacc aatatttcag
     4801 ttccttatca ttcttgtatt ctaaaagttt ttccaactcg ctagcatcgt gatgatagcc
     4861 atgtccaagt aggccatcca ggtagcttgc caaacttgga ttagcatgca tgagccagcg
     4921 acggaaggtg atgccgtttg tcttgttgtt aaacttctca gggtaaagct cgtagaaggc
     4981 tttcaactct gaagttttca aaatctcggt atggagtgcc gccaccccat tgatagaata
     5041 accataatga atatccatgt gggccatgtg aacacggcca tgttcatcga tgatattgac
     5101 agcaggatca tccttcactt ctttggcacg acgatccagc tcttcaataa atggcaccaa
     5161 gtgtggcacc acacggttga ggaagtccag cggccatttt tccagcgcct ctgacaagat
     5221 ggtatggttg gtataagcag tcattttctt aacaatttca actgcctcat caaatgaaat
     5281 gccacgaagt tccaacaaac gaatcaattc tggaataaca agtgatgggt gggtatcatt
     5341 gatttgaacc actgcgtagt ctggtaagtc atggagattt gaaccttttg caatcgcctc
     5401 atcaatcaag agttgggcag cgttagacac cataaaatac tgctggaaga tacgcagaac
     5461 tttaccttca tcggtcgaat catctggata aaggaagaga gtcaagttgc ggaaaatatc
     5521 ttccttatca aattctattc catcataaat gatattgtca tcaactgaac caaggtcaaa
     5581 caagcgcaag cgattcttcc gctctgtctt ataaccaggt acatcgatgt catacaactt
     5641 agatgtcaag gtaaaattag caaatggcac ctgataagaa atcggtgact cagtcagcca
     5701 tgaacgtggc gtaatccact cgtttggcac agctgactgt tgatggtatt caaacaactg
     5761 gcggaacagt ccaaagtgat aattcaagcc gaccccatca ccgttaagac ctagactagc
     5821 aattgaatca aggaagcagg cagccaaacg acccaaaccg ccgttaccaa gagatggctc
     5881 caactcaaca tcttcaatag caatcaaatc cttaccagct gccaccaact ggcttttaac
     5941 ctcatcataa agaccaaggt taattaaatt attagacaag agcttaccaa ttaagaactc
     6001 tgctgaaata taatagacct ttttcttttg gtcattagta tatttggctt cactatgctg
     6061 ttttgtaaaa gcaagcaagg cgtaatagag ttcttggtct gtacaatctt caatgcgctt
     6121 ggcatacata gactgaacaa aattttgtaa atttatcata ag
//
LOCUS       DASGAC010000129         6152 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.129, whole genome shotgun sequence.
ACCESSION   DASGAC010000129 DASGAC010000000
VERSION     DASGAC010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6152
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.129"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(44..1912)
                     /locus_tag="U1335_001688"
     CDS             complement(44..1912)
                     /locus_tag="U1335_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011528775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEM5232146.1"
                     /translation="MTLVSNLKQHLHIITTSLCLLLILIGIFLLQTNQGATPILFISA
                     FVIGGYQSAKEGLTELIFDKHLSVDILMILAAIGSGIIGYWMEGALLIFIFSLSSTLE
                     ELAMEKSKNAIAALMNMTPPTARKIEENGDITVLDTATIRIGDLLQVRKGDTVPLDAT
                     LISPQSIFDESMITGEPLPAEKMAGATVIGGTINQGPTVTVQVTAEKGDALFDKIVQM
                     VENAQESKSKTATFIENMEDTYVKVVLVVVPLFILFAHFALGWDWLTAFYRGMILLTI
                     ASPCALVASSSPATLSAISRAARKGMIIKGGDIADKIANLEAIVFDKTGTLTIGKPEV
                     VGATYLGDEELIKQVVQAVEKQSSHPIAQALMTYTADSSAIALQSLEDVTGKGLVARY
                     EGDSWKIGKAGFVVDSLVSPLSTGLLAQIDEAESTGKTLVYVSQNDVLVAIFMVEDSL
                     KPESKQLIAQLKEMGVTPILLTGDQEKTARYVASQVGINRVIANCLPTDKAAVIQELQ
                     TEFASVGMVGDGINDAPALAQANVSYAMGSGTDIAMESADIVLMEDLTRIPYSIRLSK
                     KMRGIIKQNIIFALSVIALLIISNLFQSINLPLGVVGHEGSTILVILNGLRLLYFK"
     gene            complement(2062..2523)
                     /gene="perR"
                     /locus_tag="U1335_001689"
     CDS             complement(2062..2523)
                     /gene="perR"
                     /locus_tag="U1335_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HEM5232147.1"
                     /translation="MELHSHLNAENQTAFEHVIQHLKEKGVRITETRKAVVAYIIDSD
                     DHPSAEMIYKDLLPNYPNMSLATVYNNLKVLLEEGFVTELKRTNDTTTYYDFMGHEHL
                     NVICEKCGKITDFMDVEIPSLKREAHEQTGYKITKEVLSVYGICPDCQLNS"
     gene            2683..3432
                     /gene="truA"
                     /locus_tag="U1335_001690"
     CDS             2683..3432
                     /gene="truA"
                     /locus_tag="U1335_001690"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011999919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEM5232148.1"
                     /translation="MTRYKAIISYDGHDFSGFQRQPHARTVQEEIEKTLVRLNSGQPV
                     TVHGAGRTDAGVHAYGQVIHFDLAGSRDAEKLRFALDTQTPEDIDVVKVEQVADDFHC
                     RYAKHSKTYEFLVDIGRPKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTAS
                     GTSVEDKVRTITAATMEYDQRRQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQ
                     IKRILAEKDRGLAGPTAAGNGLYLKEIIYED"
     gene            3422..4183
                     /locus_tag="U1335_001691"
     CDS             3422..4183
                     /locus_tag="U1335_001691"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012997518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEM5232149.1"
                     /translation="MKTKYILALSGNDIFSGGGLHADLTTYAVHKLHGFVAVTCLTAL
                     TDKGFEVIPTDAAVFAQQLASVRDVPFSAIKIGLLPTVDIAEQALEFIKTHQEIPVVL
                     DPVLVCKETHDTEVSQLRDELLKFLPYVSIITPNLAEAQLLLQKDIKTVEEMKQAAVA
                     LYDLGAKAVVIKGGNRLGGSEAIDVFYDGQEIVVLQSPLLSENNVGAGCTFASSIASQ
                     LLLDQEPLEAVRLSKDFVHAAIEKSDDYGVIQYEK"
     gene            4173..4658
                     /locus_tag="U1335_001692"
     CDS             4173..4658
                     /locus_tag="U1335_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM5232150.1"
                     /translation="MRNKQTQELVLLAILTALSLVLAFIHVPTPTGFFTLLDVGVFFT
                     AFYLGKKEGAIVGGLAGLLIDFLLGYPHWAFFSLVFHGAQGYFAGWTGKKRILGLVLA
                     TLSMVGGYFVASSFMYNVADAVTSLMSNTLQNTVGLVVGYVLAQAIERIGAVNHVIKG
                     N"
     gene            4639..5205
                     /locus_tag="U1335_001693"
     CDS             4639..5205
                     /locus_tag="U1335_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01440 family protein"
                     /protein_id="HEM5232151.1"
                     /translation="MSLKEIKEQTQQVVQEVLELSNLQKGQIFVLGLSSSEVIGGHIG
                     KNSSLEVGEVVVETILEILELKGIYLAVQGCEHLNRALVVERELAIQKDLEIVNVLPT
                     LHAGGSGQLAAFKYMKDPVEVEFITAQAGVDIGDTAIGMHIKHVQVPIRPSLREIGQA
                     HVTALASRPKLIGGARAAYQEDKIRKGS"
     gene            5205..5819
                     /locus_tag="U1335_001694"
     CDS             5205..5819
                     /locus_tag="U1335_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1349 domain-containing protein"
                     /protein_id="HEM5232152.1"
                     /translation="MKEFTVKDLVWTRPPRQFTISDEEITITTHPQTDLWQKTYYHFV
                     NDNAPVLQMETEEDYFSFTVKTDFAGSHTRFDQCGIVLYQDSENWLKCSIEYENEDFQ
                     HLGSVVTNHGFSDWATTEISSQVKSMWFRLSRRGADYCFENSEDGIHFKQMRVCHFHQ
                     GTGKIAFGLYACSPENSSFTARFTNMELSDCKWQAHDGQEPDEI"
BASE COUNT         1607 a         1309 c         1551 g         1685 t
ORIGIN      
        1 aaaagaataa taagaaaacc gccaagtagc tggcggtttt cggctattta aaatacaaga
       61 gtctaagtcc gttcaaaatc accaaaatgg tagatccttc gtggcccacc acaccgagtg
      121 ggaggttgat agactggaag aggttggaga tgataagaag ggcaatgaca gacagggcaa
      181 agataatgtt ttgcttgatg atgccccgca ttttcttaga gagacgaatg gagtaaggaa
      241 ttctcgtcag gtcttccatg agtacgatgt cagctgactc catagcgatg tccgttccgc
      301 ttcccatagc atagctgaca ttggcttgag caagggcagg agcatcgttg ataccgtccc
      361 ccaccatacc gacagacgca aactcggttt gcagttcttg gataacagca gccttatccg
      421 tcggcagaca gttggcaatg acccgattaa tgccgacctg actcgccaca taacgagccg
      481 tcttttcttg gtcgcccgtt aagagaatgg gtgtcacccc catttctttc aactgtgcaa
      541 taagttgctt gctctcaggt ttcaaactat cttccaccat gaagatcgcc accagcacat
      601 cattttggct gacatagacc agggttttcc cagtgctttc cgcctcatcg atctgtgcca
      661 gcaagccagt agacagggga ctcaccaggc tgtccaccac aaatcccgcc ttaccgattt
      721 tccagctgtc gccctcatat ctcgccacca agccttttcc ggtcacgtct tctaggcttt
      781 ggagggcaat agcagagctg tcagccgtat aggtcatgag agcttgagcg atcggatggc
      841 tagattgttt ttcaactgcc tgaacaacct gtttgataag ctcctcatca ccaagatagg
      901 tcgcacctac aacttcaggt ttaccaatgg ttagggtacc cgtcttgtca aagacgattg
      961 cctctagatt ggcgatttta tccgcaatgt caccgccctt gataatcatg cccttgcgtg
     1021 ccgcacggct gatggcagaa agagtcgccg gtgaagaaga agccacaagc gcacacggag
     1081 aagcgatggt caagagaatc atgccacggt agaaggcagt taaccagtcc cagcccagag
     1141 caaaatgagc aaagagaatg aagagcggta ctaccaccaa aacaaccttg acataggtat
     1201 cttccatatt ttcaatgaaa gtcgctgttt ttgatttgga ttcttgggcg ttttcaacca
     1261 tctggacgat tttatcgaag agggcatctc ctttctcagc cgtaacttga acggtcacag
     1321 ttggcccttg gttgatggtg ccgccgataa cagtagcgcc agccattttc tccgcaggaa
     1381 gtggctcgcc tgtaatcatg gattcgtcaa agatggattg tggactgatg agggtagcat
     1441 ccagtgggac cgtgtcaccc ttgcggactt gcaagaggtc accgatgcgg atggttgcgg
     1501 tgtctaagac agtaatgtca ccattttcct cgattttgcg agccgttgga ggcgtcatgt
     1561 tcatcagagc ggcaatagca ttcttgcttt tttccatggc taattcttcc agagtagaag
     1621 aaagggagaa gatgaagatg agtagagccc cttccatcca gtagccgata ataccagaac
     1681 cgatagcagc caaaatcatc aagatatcaa ccgacaggtg tttgtcgaaa atgagctcgg
     1741 taagcccctc tttagcggac tggtagcccc cgatgacaaa ggctgaaatg aagaggatgg
     1801 gtgtggctcc ctgattagtt tgaagtaaga aaatcccgat gaggatcaac aacagacaga
     1861 gagaagttgt gatgatgtga agatgctgtt ttagattgct tacgagagtc atagttttat
     1921 ccttatttgt aatcattatc gtttttgata agttaattat aacagttcta aatagaaaat
     1981 caagagtttt ttagaataat tataaataag atttatcaga caattcaaag agaaaagaaa
     2041 aaagcaacca gtggctgctt tctagctatt gagttgacag tcggggcaga taccatacac
     2101 agacaagact tccttggtaa tcttataacc tgtttgttcg tgggcttcgc gtttgaggct
     2161 aggaatttct acgtccatga agtcggtaat cttcccgcat ttttcacaga tgacattgag
     2221 atgttcgtgg cccatgaaat cataataggt tgtcgtgtca ttggtacgct tgagttcagt
     2281 gacaaatcct tcttctaaga gcactttgag gttgttatag acagttgcca aactcatatt
     2341 agggtagttg ggcaggaggt ctttgtatat catttcagca cttggatgat cgtcgctatc
     2401 aatgatatag gctacaacgg ccttacgtgt ttctgtaatg cgaacacctt tttcctttaa
     2461 gtgttgaata acatgctcaa aggcagtttg gttttctgcg ttaaggtgag agtgtagttc
     2521 cattcgtgcc tcctgttctt ttcaagaata attctaattt acttttcttc attataatcc
     2581 tttttatgaa agctgtcaaa cttagaaggg atccatctgt gatagtacag tttttgtttt
     2641 ataggcttgt ttttctaagt ttgcttgtgc tacaatcaga acatgacacg atataaggca
     2701 attatttcct acgacggaca tgacttttct ggtttccagc gccagcccca tgcccgtaca
     2761 gttcaggaag aaatcgaaaa aacactagta agactaaaca gtggccagcc tgtaaccgtt
     2821 catggagcag gtcggacaga cgcaggagtg cacgcatatg gtcaggtgat ccactttgac
     2881 ttggctggca gtcgagatgc tgagaagctc cgctttgccc ttgatactca aacccccgag
     2941 gatattgatg tagtcaaggt agagcaggtg gcggatgatt ttcattgccg ctatgccaag
     3001 cacagtaaga cctacgagtt tttggtggat attgggcggc ctaagaatcc catgatgcgg
     3061 cactatgcga ccttttatcc ctatgatttg gatttgagct tgatagaaga agccattcag
     3121 gacttggtgg ggacccatga ttttacaggc tttacggctt cggggacctc ggttgaagac
     3181 aaggtgcgga ccattacggc ggcgactatg gaatacgacc agcggcggca gtttttgatt
     3241 tttacctttt caggcaacgg ttttttgtac aagcaggtgc ggaatatggt tgggacctta
     3301 ctgaaaattg gcaacggtcg catgcctgtg ggacagatta agcggatttt agcagaaaag
     3361 gatcgtggtt tggcaggtcc aactgcggca ggcaacggcc tctatctaaa ggagattatc
     3421 tatgaagact aagtatattt tggcgctttc gggcaacgat attttcagcg gtggcggtct
     3481 ccatgcggat ctgacgacct acgctgtcca caagctgcat gggtttgtgg cggtgacctg
     3541 cttgacagct ctgaccgaca agggttttga ggtcattccg acagatgcgg cggtctttgc
     3601 ccagcagctg gctagtgtga gggatgtccc cttttctgcg attaagattg gcttgcttcc
     3661 cacggtggac atagcagagc aggctttgga gtttatcaag actcaccagg agattcctgt
     3721 ggtcttggat ccagtcttgg tttgcaagga aacgcacgat accgaggtca gccagttgcg
     3781 agatgaactc ttgaaattcc ttccctatgt cagcatcatt acgccaaatc tggcagaagc
     3841 tcagctattg ctccaaaaag acatcaaaac ggtggaggag atgaagcagg cggcagtggc
     3901 cttgtatgac ttgggtgcca aggcggtggt catcaaggga ggcaatcgct tgggtggctc
     3961 agaggcgatc gatgttttct acgatggtca ggaaatcgtg gtgctccagt cgcctctgtt
     4021 gtcagaaaac aatgtggggg cgggctgtac ctttgcgtcc agcattgcca gtcagctttt
     4081 gctggatcaa gagcctttgg aggcggtcag actgtccaag gactttgtcc atgcggcgat
     4141 tgaaaaatca gatgattatg gggtgattca atatgagaaa taaacaaacg caagaattgg
     4201 tcttgctcgc tattttaaca gccttgagtt tagttttggc ctttattcat gtgccaacac
     4261 cgacgggatt ttttactttg ttggatgtgg gtgtcttctt taccgccttt tacttgggca
     4321 agaaagaggg agcgattgtc ggcggtttgg cagggctatt gattgacttc ttgttgggct
     4381 atccccattg ggcattcttt agtctagtat tccacggggc tcaaggttac tttgcgggtt
     4441 ggacaggcaa gaaacggatt ctcggtttag tcttggcgac gctctctatg gttgggggct
     4501 attttgtggc atctagtttc atgtataatg tagctgacgc tgttacaagt ctgatgagta
     4561 atactctgca aaacacagtt ggtttggtag ttggttacgt cttggctcag gcaatagaaa
     4621 gaattggtgc agtaaatcat gtcattaaag gaaattaagg aacagaccca gcaagttgtg
     4681 caagaagtcc tagaactcag caatcttcaa aagggtcaga tatttgttct tggtttgtct
     4741 tctagtgagg tcattggtgg gcatattggc aaaaattcca gtctggaagt cggtgaggtg
     4801 gttgttgaaa ccatcttgga aatcctggag ctaaaaggta tttatctagc tgtccaaggt
     4861 tgtgaacacc tcaatcgtgc cttggtggtg gagcgtgaat tagcaattca gaaggacttg
     4921 gaaatagtca atgtcctccc aactcttcat gcaggtggtt ctggtcagtt ggcggccttc
     4981 aagtatatga aggacccggt ggaagtcgag tttatcaccg ctcaggctgg tgtagacatc
     5041 ggcgacacag ctatcggcat gcacatcaaa catgtccaag ttccgattag gcctagcctg
     5101 cgtgagattg gacaggccca tgtcaccgcc cttgccagcc gcccaaaact aatcggtgga
     5161 gctcgtgcgg cctatcagga agataagata cggaaaggtt cataatgaaa gaatttacgg
     5221 tcaaggattt agtgtggacc cgtccaccga gacaattcac tatttcagat gaagaaatta
     5281 ccattaccac ccacccccag acggatttgt ggcagaagac ctattaccat tttgtgaatg
     5341 acaatgctcc tgtcttacag atggaaacag aggaggacta tttttccttt actgtgaaga
     5401 cggattttgc gggtagtcat actcgatttg accagtgtgg aattgtcctt tatcaggatt
     5461 cggagaattg gctcaagtgt tcgatagagt atgaaaatga ggacttccaa cacttgggaa
     5521 gtgtggtgac caatcacgga ttttctgact gggcaactac tgaaatcagt tcacaagtca
     5581 aatccatgtg gtttaggctc agtcgcaggg gagctgatta ctgttttgaa aattccgaag
     5641 atggtatcca cttcaaacaa atgcgggttt gccattttca tcaagggacg gggaaaatag
     5701 cttttgggct atatgcttgt tcaccagaaa actccagttt tacagctcgc tttaccaata
     5761 tggaattgag cgactgcaaa tggcaggccc atgatggcca agagccagat gaaatatagt
     5821 aagagtttta ggtaagtagt aacagaaaaa tagttgaaac tcatactctt cgaaaatcaa
     5881 aaagatccgt tgtcaacttg ccttgaagaa ctcctactca atcttcgccg tcgtttccaa
     5941 ggcgactttt gattttcatt gagtatcagg gggagtggga aagaactcga ccaagataaa
     6001 aagagttcgt caacaagtcc ttatttccag ttgttgagct gaaacagtct atccccagac
     6061 tgtttcactc ccacccccgc acagctcaaa ctgtctggga gacagtttga ggttggagat
     6121 aaggcgaact ctgttcgcat cagtcgtaga gg
//
LOCUS       DASGAC010000130         6133 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.130, whole genome shotgun sequence.
ACCESSION   DASGAC010000130 DASGAC010000000
VERSION     DASGAC010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6133)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6133)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6133
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.130"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(29..442)
                     /gene="ndk"
                     /locus_tag="U1335_001695"
     CDS             complement(29..442)
                     /gene="ndk"
                     /locus_tag="U1335_001695"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEM5232153.1"
                     /translation="MERTFFIIKPDALKRGLAGQILSRIERRGFQIQDLKMVTATEEL
                     ISQHYEHLTDKPFFPQLVQYMTSGPMIAGIIEGPEVIKSWRDMMGATNPVNALPGTIR
                     GDFATAPIDGIVANVVHGSDSIEAAHREIALWLGK"
     gene            complement(465..1052)
                     /locus_tag="U1335_001696"
     CDS             complement(465..1052)
                     /locus_tag="U1335_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002915299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HEM5232154.1"
                     /translation="MQINTHNAEILLSAVSKAQYPGDDIPEIALAGRSNVGKSSFINT
                     LLGRKNLARTSGKPGKTQQLNFYNIDDKIRFVDVPGYGYAKVSKTERAKWGKMIEEYL
                     TTRENLRVVVSLVDMRHEPSADDVQMYDFLKYYEIPVIIVATKADKIPRGKWNKHESM
                     IKKRLDFDKNDQFVIFSSETRHGYDQAWDAILSNI"
     gene            complement(1107..2333)
                     /gene="clpX"
                     /locus_tag="U1335_001697"
     CDS             complement(1107..2333)
                     /gene="clpX"
                     /locus_tag="U1335_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEM5232155.1"
                     /translation="MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEI
                     IREELAEEVLTDLADTPKPQELLNILNNYVIGQDRAKRALAVAVYNHYKRINFQDSRD
                     ENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
                     LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVA
                     SVPPQGGRKHPNQEMIHVDTKNILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDE
                     KESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRILTEPKNALVKQYQTL
                     LSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRV
                     TKAAVDGKEKPLLETA"
     gene            complement(2531..3043)
                     /locus_tag="U1335_001698"
     CDS             complement(2531..3043)
                     /locus_tag="U1335_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HEM5232156.1"
                     /translation="MTKKIVAIWAQDENGLIGKGDKLPWTLPADWAHFKETTTGHAMV
                     MGRVTFDGMGKRALPNRHSIVLTTDKTYQLESERVTILHSVEDVLDWYNKQEQTLFVI
                     GGGQIFTAFAPYIETLIVTDIHGQFNGDVYFPKAFPMEKFQLQSANLRPKDEKNPYDF
                     TIKTYERRDG"
     gene            complement(3472..4311)
                     /locus_tag="U1335_001699"
     CDS             complement(3472..4311)
                     /locus_tag="U1335_001699"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015632084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HEM5232157.1"
                     /translation="MTKADIIFKENIRKIMEDGVFSENARPRYKDGNVANSKYITGSF
                     AEYDLAKGEFPITTLRPIPIKSAIKEILWIYQDQTNDLSVLQEKYGVQYWNDWEVEGT
                     GTIGERYGAIVKKHDIISKILKQLEENPWNRRNVISLWDYEAFDQSAGLLPCAFQTMF
                     DVRRVDGEIYLDATLTQRSNDMLVAHHINAMQYVALQMMIAKHFGWKVGKFFYFINNL
                     HIYDNQFEQAEELLRRTPSEVEPRLVLNVPDGTNFFDIRAEDFELVDYNPVKPQLKFD
                     LAI"
     gene            complement(4364..4666)
                     /locus_tag="U1335_001700"
     CDS             complement(4364..4666)
                     /locus_tag="U1335_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232158.1"
                     /translation="MNLTLLKRLNLVLYGIAIFLIALLFLPIGQWFDLVNVNFKLTFF
                     IIPFFGLASLPTAIYTKNVHQILLSVLLVALYFILFSIITALSGLFHLDFYSFFFK"
     gene            complement(4678..4956)
                     /locus_tag="U1335_001701"
     CDS             complement(4678..4956)
                     /locus_tag="U1335_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232159.1"
                     /translation="MKQVSMPKLIDYLTIVGLLILLSAFFLDYWIRDWFFPSSWGNVA
                     TMLILPILGTLILILSIYYKKLWTGLISIFLMISFPLIFGIGYFIFGP"
     gene            complement(5082..6041)
                     /locus_tag="U1335_001702"
     CDS             complement(5082..6041)
                     /locus_tag="U1335_001702"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000078546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family glucokinase"
                     /protein_id="HEM5232160.1"
                     /translation="MSKKIIGIDLGGTSVKLAILTTEGEIQEKWSIKTNILDDGSHIV
                     PDIIDSIKQRFETHGLTKDDFLGVGMGSPGVVDSEAGTVIGAYNLNWKTLQLVKDQFE
                     SALGLPFFIDNDANVAALGEQWVGAGNNNPNVVFMTLGTGVGGGVIAAGNLIRGVKGA
                     GGELGHITVDFDEPFACTCGKKGCLETVASATGIVNLSRRYADQYAGDAKLKQMIDDG
                     QDVTAKDVFDLAKEGDDLALIVYRHFSEYLGVACANIAAVLNPAYIVLGGGVSAAGEF
                     LLDGVRKVFAENSFPQIKESTQIVLATRGNDAGVLGAASLVLK"
BASE COUNT         1848 a         1343 c         1105 g         1837 t
ORIGIN      
        1 actttgagaa tttaccgtgt ctgctctgct atttccctaa ccataaggcg atttcacggt
       61 gagcagcttc tatgctgtca gatccgtgaa caacatttgc cacaatacca tcaattggtg
      121 cagtggcgaa atctcctcga atggtgccag gtaaggcatt gactggattg gtagctccca
      181 tcatatctcg ccaagatttg ataacttctg gcccttctat aatgccagct atcatcggcc
      241 cgctcgtcat atattgtact aattgcggga agaaaggttt atctgtcaaa tgttcataat
      301 gttgactgat tagctcttct gtcgctgtaa ccatttttaa atcttggatt tgaaatcccc
      361 tgcgttcgat acgtgaaaga atttgtcctg caagtccacg cttaagagca tctggtttga
      421 tgatgaagaa agtacgttcc atgatttttc tcctgaactg tttattagat gttacttaag
      481 atagcatccc atgcctgatc gtatccgtga cgagtctcag aagaaaagat aacgaattga
      541 tcatttttat caaaatccaa tctctttttg atcatcgatt cgtgcttatt ccactttcct
      601 cgtgggattt tatcagcctt cgttgccaca ataataacag gaatttcata atatttcaag
      661 aaatcataca tttgaacatc atctgctgat ggctcatgac gcatgtctac taaactcacc
      721 acaacacgta gattttctcg tgtcgtcaaa tactcttcaa tcattttgcc ccacttagcg
      781 cgctccgttt tggatacttt agcatagcca taacctggaa catctacaaa tcgaatttta
      841 tcatctatat tataaaaatt gagttgttga gtctttcctg gttttcctga cgtacgtgca
      901 agattttttc ttcctagaag agtattgata aatgaggact ttccaacgtt agatcgcccg
      961 gcaagggcaa tttctggaat gtcatcgccc ggatactggg cttttgaaac agcactgagc
     1021 aaaatctcag cattatgtgt gttgatttgc attttatacc tttcataaat aagggtagaa
     1081 aacaatcagt ttccaccctt tattttttat gcagtttcta gtaaaggctt ttctttaccg
     1141 tctactgctg cttttgttac acgaacgcgt ttaacgttat cttgacctgg cacctcaaac
     1201 atgacatcca acatcgtttc ttcaatgatg gagcgaagtc cacgagcacc agttttacgt
     1261 tcaattgctt tttctgcaat tgctaacaag gcgtcctcat caaagtcaag ctccacgtca
     1321 tcataagaca agagtgtctg gtattgtttt acaagagcat tcttcggttc cgtcaaaatg
     1381 cgtaccaaat cctctgttgt caattggtcc aaagctgcga atacaggcaa gcgaccaatc
     1441 aactctggaa tgataccgaa tttttgaata tcgtctgcaa tgatatgttg catgtatgat
     1501 tctttttcat caatagcacg attattatga ccaaaaccga tgattttttc accgagacgc
     1561 tgtttgacga tttcttcgat accatcaaat gcaccgccaa cgataaacag gatatttttg
     1621 gtgtccacgt gaatcatttc ttggtttgga tgtttgcgtc cgccttgtgg tggtacgctg
     1681 gccacagttc cctcgataat ttttaggaga gcttgctgga caccttcacc agatacatcg
     1741 cgggtaatgg acacattttc accttttttg gcaattttat caatttcatc cacatagata
     1801 attcctcttt ctgcacggtc gatgttaaag tctgcagcct gcaaaagttt gaggaggata
     1861 ttttctacgt cttcacccac ataacccgcc tcagtaagag cggtcgcatc agcaatagca
     1921 aacgggacat tcaaactttt agccaaggtc tgtgctagga aggtttttcc tgaaccagtc
     1981 ggaccaatca taaggatatt tgatttttgt aaatcaacat cgttctcatc acggctatct
     2041 tggaaattga tccgtttgta gtggttgtag acagcaactg ccaaggcacg cttagcacga
     2101 tcctgtccga tgacatagtt gttcaggata ttgagtaatt cttgtggctt tggcgtatcg
     2161 gccaagtctg tcaaaacttc ttctgccagt tcctcacgaa tgatttcctg tgctagttcc
     2221 acgcattcat tacaaatgaa gacattgttc ccagcgataa tttttttaac ttcttcttga
     2281 ttttttccgc aaaatgagca atagattagc tcatgtgtat gcttaacagc catgtgtttc
     2341 ctctttcata tctcttatct aaataaaaat ccataaatgg catgaatact attgaccaga
     2401 ttggtaaaag cattcagtaa aaataaaatt gctaaaccaa aacgtttctt ccgaaaggct
     2461 tgaatcgcac aaagaacaca aatcccacag agaaatgctg taaataaacc gaataaactt
     2521 ctctccatgc ctaaccatct cttctttcat aggtttttat tgtaaaatca tacgggtttt
     2581 tctcgtcttt tggacgtaaa ttggcgcttt gtagctgaaa tttctccata ggaaatgctt
     2641 tcggaaaata cacatcgcca ttaaattgac cgtgaatatc tgtcactatt aatgtttcaa
     2701 tgtaaggtgc aaaggcagta aaaatttgtc ccccaccaat cacaaatagt gtctgctcct
     2761 gtttgttata ccaatctagg acatcttcca cactgtgtaa aatggtaaca cgttcactct
     2821 ctagttgata ggttttatcc gttgtcaaaa cgatggagtg acgattggga agagcacgtt
     2881 tacccatgcc atcaaaagtt acacgtccca tcaccatagc atgtccagtg gtcgtttctt
     2941 taaaatgagc ccagtctgca ggtaaagtcc atggaagttt atcgcctttt ccaatcaatc
     3001 cattttcatc ttgagcccaa atggcaacaa tctttttagt cattttctct cactttccgt
     3061 cctatcattc tatcaaaaaa acatgaaaaa tgcacttacc aagtagggct agtgcaaatt
     3121 tttatcatat tgaaactatc atcgactcct cagagatagg gaagattccg agattcgtag
     3181 aatgtgaatc tcgctggtgc tggaaagccc cctcatctta aatcgccaag tcaaatttga
     3241 gttgcggttt aactggcttc gaaagtctga gtatagactg ttgaaggttg gaaataggga
     3301 gcgggaaaga actcaactgg tcaaaaaaag agttcgtctt cccgcccccg cacagttgat
     3361 taggtcagat ttggagtgta aaacacgaac aaatctgcca atcaaccact gcgctgagat
     3421 gttgacacga accctgagaa gcgaggtcgg gctttttgcc cagccctcat cttaaattgc
     3481 taaatcgaat tttaactgcg gtttaactgg attgtagtcc accaattcaa aatcttctgc
     3541 ccgaatatca aagaaattgg taccgtcagg aacatttaag accaaacgtg gctcaacttc
     3601 agatggtgta cgacggagta attcttcagc ctgttcaaac tgattgtcat agatgtgaag
     3661 attgttgatg aaatagaaaa acttcccaac cttccatcca aaatgtttag caatcatcat
     3721 ctgaagggct acatactgca tagcgttgat atgatgggct accaacatat catttgaccg
     3781 ttgagttaga gttgcatcca gataaatctc cccatccact cggcgaacat caaacatagt
     3841 ttgaaaggca catggcaaca aaccagcaga ttggtcaaaa gcttcataat cccataagga
     3901 aatcacattg cgacggttcc agggattttc ttctaactgc ttgaggattt tagagatgat
     3961 gtcatgcttt ttaacaatag caccatatcg ttctccaatg gttccagttc cttcaacttc
     4021 ccaatcattc caatactgga caccatattt ttcctgtaaa accgacaaat cattggtctg
     4081 gtcttggtaa atccagagaa tttccttaat ggctgattta atcggaattg gtctaagtgt
     4141 tgtaatagga aactcgccct tggccaaatc atactcagca aaggaaccag taatatactt
     4201 agaattagca acatttccat ccttgtaacg tgggcgagca ttttctgaaa aaacgccatc
     4261 ttccataatc ttacgaatgt tttctttaaa aataatatct gctttagtca tggtcttagt
     4321 atagcaaatt ctagcaaaaa actccagttt tgcactggag ttctcatttg aaaaagaatg
     4381 aataaaaatc aaggtggaac aaaccagata gggcagttat tatgctgaac aatataaaat
     4441 acaaggcaac caggagaaca ctcaacaata tctgatgaac atttttcgta taaatcgccg
     4501 ttggtaagct ggctagtccg aaaaatggaa tgatgaaaaa tgtcagttta aaattcacat
     4561 ttacaagatc aaaccattgc cctattggta aaaataacaa ggcgatgaga aaaattgcga
     4621 taccatacaa aactagattt aatcttttta gtaaagtcag gttcataact actccttcta
     4681 ggggccaaat ataaagtagc caataccgaa tatcagagga aatgagatca tcaagaagat
     4741 actaatcaaa ccagtccaca attttttata ataaatagat agtataagaa ttaaagtccc
     4801 cagtatagga agaatcaaca tggttgctac gtttccccag ctagacggga aaaaccagtc
     4861 acgaatccag taatcaagga aaaaggcaga cagtaaaatc aaaagcccga ctatagttag
     4921 atagtcaatt agtttaggca tacttacttg tttcatacac caacactcct ttctcttttc
     4981 actattattg taccctttta tcaaccgaat ttcaatatat gtatataaag aaagtgtgac
     5041 agcggattag aaaaaaagca gagtttcccc tgcttcagtt attatttcaa gacaagtgat
     5101 gctgcaccta atacacctgc atcattacca cgtgttgcca agacaatttg tgtactttcc
     5161 ttgatttgtg ggaagctatt ttcagcaaag accttgcgaa cgccatccaa taagaactct
     5221 cctgcagctg atacaccacc acccagaacg atgtaggcag gattgaggac tgctgcaatg
     5281 tttgcacaag caacacctag gtattctgag aaatgacggt agacaatcaa agccaaatca
     5341 tcgccttctt ttgccaagtc aaagacatct ttagccgtta catcttgccc atcatcgatc
     5401 atttgtttca gttttgcatc gcctgcgtat tggtccgcat aacgacggct aaggttgaca
     5461 atacctgtcg cggaagcaac tgtttctaga caacctttct taccacaagt acatgcaaat
     5521 ggctcatcaa agtcaactgt gatatggccc aattcaccac cagcaccttt gacaccacga
     5581 atcaagtttc cagcagcgat gacaccgcca ccgacacctg taccaagcgt cataaagaca
     5641 acgtttggat tgttgtttcc agcaccaacc cactgctcac cgagggccgc tacgtttgca
     5701 tcattgtcga taaagaatgg taaaccaagc gcagattcaa actgatcttt aaccaattgc
     5761 aaggtcttcc agttgaggtt ataggcaccg ataacagtac cagcttcgct atcaacgaca
     5821 ccaggagacc ccataccaac acccaaaaag tcatcttttg tcaaaccatg ggtttcaaat
     5881 cgctgcttga tactgtcaat aatatcagga acaatatgac ttccatcgtc taatatattt
     5941 gtcttgatag accatttttc ttgaatttct ccctcagtag tcaagatggc caatttaaca
     6001 gaagttcccc caaggtcaat accaataatt tttttagaca taatcatcac ctcaaatgta
     6061 ttttctttat tataacataa tgcaaaggtt tgcgtaaagc cttttcaaaa aattgaacgg
     6121 ataaaaaatt tgc
//
LOCUS       DASGAC010000131         6116 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.131, whole genome shotgun sequence.
ACCESSION   DASGAC010000131 DASGAC010000000
VERSION     DASGAC010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6116)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6116)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6116
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.131"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            135..1706
                     /locus_tag="U1335_001703"
     CDS             135..1706
                     /locus_tag="U1335_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM5232161.1"
                     /translation="MKKKWLTGLLSTVAVLTLAACTSSGSSTASSSSNSVADSETFTY
                     AINGDPSSTNPINTSDRWGLTLTNFIYSPLIRVEADGTYVNELADSYEIAEDGLSITV
                     KLRQDVKWSDGESFNADDAIFTYEQKIKKENGGSDGLYINDQPVKLEKLDDYTVKFVL
                     PAISAPALDNIVTETYIIPQHVFKDEADFSASQLTATPVGTGPYKFVEYKHGEYIKLA
                     ANEYYYKGEAEIDNLVLRIIESADTTKVALQTGEVDAAFVLPSDIQDLSTDTITTYAY
                     SENRVGYLGLNTSTEELKDVKVRQALLYALNKEEFNQAAYLDKKYYENPYSFLPVANP
                     YVTEDVEKYEQNVEKAKQLLSEAGVSNLTLNLGYAGSDAAQTLQATLIQQQLSAIGVT
                     VELAGGDSTALFTELKKEGSTAYDLFLGGYIMGNDPDQYARLFKTGGASNYFKLSSNE
                     VDSLFEQGAVELDQTKREQIYDDLQATLADQAAIYPIVDNKKVLAVNNRVKNVEEAGL
                     IPIYTFEDPSKLTIE"
     gene            1795..2757
                     /locus_tag="U1335_001704"
     CDS             1795..2757
                     /locus_tag="U1335_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5232162.1"
                     /translation="MFRYIVKRILQAIPLLLLISFIVFSLIQLAPFDVIDSMTTPNMS
                     QEQIDLLKVKYGLDQPFLVQYAVWLKGLLTGDLGFSLITQHSIGVDLAEKIPNTISLV
                     LPAYVTALILAIILGLLAASQRGKWVDKFIDAFASVGIAVPTFWFAMILIYFFGYKWQ
                     VFPFIGMYTLGKEGNLLDFLAHFTLPYVTLTMAFLPELIRFIRASAIVEVEKDYVTVQ
                     EAFKASRFEIFGKHVARNVLIPIVTQIGMALPMLVTGAIITETIFAWPGVGPYLTSAT
                     KSLDYPVIMAVMLLSATLVILGNLLSDILYAVVDPRIWKGGEGQ"
     gene            2760..3584
                     /locus_tag="U1335_001705"
     CDS             2760..3584
                     /locus_tag="U1335_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016613556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5232163.1"
                     /translation="MKQFKETVKSSPLYLFSILFILFLLFLSLIAPMIPIDPNVTDVS
                     QMNQGPSAEHWFGTDQVGRDYFIRVIYGGRISLLVGLLAMTASVTIGSLVGITAGYLG
                     GKWDNAIMRFVDVLSSIPWLVLVIVLSVFLKPGLTTIIIVIGGFSWMSIARMLRAETL
                     KAKVADYVGYAAFIGLKKPVIVWRHIFPAILPTLIVTASTSISSAIMTESALSFLGMG
                     IQQPLASWGSLLQNAQSTLQSAPHMAILPGLFILLTIYSFNNIGDLIRDCLEREVY"
     gene            3584..4444
                     /locus_tag="U1335_001706"
     CDS             3584..4444
                     /locus_tag="U1335_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5232164.1"
                     /translation="MSKQLVEISNLTIVNKKRKGQSILVKGIDLSIPKGKIVGIVGES
                     GSGKSLSMKSLMGILPKGLEASFDRFGMNGQQVVNPKLLSLSMIFQDPMTSLNPLRTV
                     GYHLQEVLRRFQPKLTKEERDRTIHEMLEKVGIPDPELRLKQFPFEFSGGMRQRIMIA
                     MALLTKPDMLIADEPTTALDVTIQAQILALLKELQEQLGLTVVIVSHDFSVIAGICDL
                     VYVMRNGLVVEHGTVDSIFSQPLHAYTQSLLRAARLEASLGAVLADSEDSQLIQVSPG
                     HWVRKEEKNG"
     gene            4437..5318
                     /locus_tag="U1335_001707"
     CDS             4437..5318
                     /locus_tag="U1335_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5232165.1"
                     /translation="MDKEVLVQVSDVSKTYSKKNWFGQEQRVDALNGVNVSIYKGETL
                     GLVGESGSGKSTLSKIVLGLEKASQGRVDFPGLTSEELNNQALQVIYQDPYSSLNPYL
                     SALELVKEPLYSLPKKEAEEKALAMLERVGILGDAVHKRPKSFSGGQRQRIGIARAVV
                     SHPKFIVCDEPTSALDVSIQATILDLLNQLQEDLGLTYLFISHDLNLVNQFADRIAVM
                     YKGSLVEIGPAQDIFQNPQHPYTRYLLQSNLSLDPLEARAQLQELSQTGLIKDFVTDG
                     VWTQVDKEHFVLKATDK"
     gene            5403..6092
                     /locus_tag="U1335_001708"
     CDS             5403..6092
                     /locus_tag="U1335_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEM5232166.1"
                     /translation="MGKVIIGISGNEQEFPTKSGRVYVTVARELADSVRQAGGVPMVI
                     PMGTPNLAKDYIDMIDKLILSGGQHVDPSLYGQKRLIDSDDYLLERDEFELALIEEAL
                     RQGKPIFAVCRGMQLLNVALGGSLEQEVADHWQEGIEGTSHRLQVKPKSRIGQLFAQG
                     SPINSFHHQRIKELAPGLVATGLDPRDGTIEAYESRGNQALFGIQWHPEFLYNDCKQH
                     RDLFQYLVDIF"
BASE COUNT         1738 a         1115 c         1393 g         1870 t
ORIGIN      
        1 ttttcaacac ttcataatac agagtagatt gtatcgttat agtttttctt aatgtgttga
       61 taaatattat atatttgtca aaattttaaa tccttgatag actagtacta ctttttgaaa
      121 ttggaggaag tgttatgaag aagaagtggc tcacaggctt attatctaca gtagcagtac
      181 taaccttggc agcttgtact agtagcggtt catcaactgc atcatcaagc tcaaactcag
      241 ttgccgattc ggaaactttt acttatgcaa ttaatggaga tcctagttcg acaaacccaa
      301 tcaatactag tgatcgttgg ggcttgacct taactaattt tatttactct ccacttattc
      361 gtgttgaagc agatggtact tatgtaaatg aattggcaga ttcttatgag attgccgaag
      421 atggtctaag tatcaccgtt aaactccgtc aagatgtcaa gtggtctgat ggggagagtt
      481 tcaatgctga tgatgccatc tttacttatg aacaaaaaat taaaaaggaa aacggtggtt
      541 cagacggtct ttatataaat gaccaaccag ttaagcttga aaagttggat gattacacgg
      601 ttaaattcgt tcttccagct atttctgcac cagccttgga caatattgtt acggaaacat
      661 acattattcc acagcacgtt ttcaaggatg aggcagactt ctcagcaagc caattgacag
      721 cgacaccagt gggaactggt ccgtacaagt ttgtagaata caagcatggt gaatatatca
      781 aacttgctgc taatgagtac tactacaagg gagaagctga aattgataac ctcgttttga
      841 ggataattga aagtgctgat acgactaaag tagccttgca aacaggtgaa gtagatgcgg
      901 cctttgtatt gccttctgat attcaagatt tgagtacgga taccatcacg acctatgcct
      961 atagtgagaa tcgtgtcggt taccttggtc tcaatacttc aactgaagaa ttgaaggatg
     1021 taaaagttcg tcaagccttg ctttatgcct taaataaaga agagtttaac caagctgctt
     1081 acttggataa aaaatactat gaaaatccat attcattctt gcctgttgct aatccatatg
     1141 tgaccgaaga tgttgagaaa tatgagcaga atgtagaaaa agcaaaacaa ctcttatctg
     1201 aagcaggtgt tagcaatttg actttaaatc ttggttatgc aggttctgat gcagctcaaa
     1261 ccttacaggc taccttaatt caacaacaat tgtcagctat tggtgtgaca gttgaattgg
     1321 caggtgggga ctctacagca ctctttacag agttgaaaaa agaaggttca acagcttatg
     1381 acctcttctt gggtggctat attatgggaa atgaccctga tcaatatgcc cgcctattca
     1441 aaacaggtgg agcttcaaac tacttcaaat tgtcttcaaa cgaagtggat agcctctttg
     1501 aacaaggagc tgttgaattg gatcaaacga aacgcgaaca aatctatgat gatttgcaag
     1561 cgacactggc tgaccaagct gctatttacc caatcgtaga taacaagaaa gtgttggcgg
     1621 tgaacaaccg tgtgaaaaat gtagaagaag cgggtttgat tccaatttat acttttgaag
     1681 atccgtcgaa gttaacaatt gaatagtctt tgtatgctgg tatgaccagc aaagaggaga
     1741 aggagtggca aaagctgaaa ctcctcccct ctttttcgcg tttttggagg aaatatgttt
     1801 cgatatattg taaaaagaat cttgcaggca attcctctct tgctgctgat ttcttttatt
     1861 gtcttttctt tgattcaatt ggcaccgttt gatgtcatag attcgatgac aacgccaaat
     1921 atgagtcaag aacaaattga tttattaaag gtaaaatatg gtttagatca accgtttctc
     1981 gtacaatacg ctgtctggct gaagggatta ctgactggag atttaggttt ttcactaatt
     2041 actcaacact cgattggagt tgatttggct gaaaaaattc ccaacaccat ttcattggtc
     2101 ttgcctgcat atgtgacggc cctaatccta gcgattattc tgggtttact tgcggcgtcc
     2161 caaaggggga aatgggtgga taagttcatt gatgcctttg cttctgtagg aattgcagtc
     2221 ccgaccttct ggtttgccat gattttaatt tacttttttg gatataaatg gcaggttttc
     2281 ccgtttattg gtatgtatac cttgggaaaa gaaggaaacc ttctagattt tctggcacat
     2341 tttaccttgc cctatgtgac cttgactatg gcattcctac cagaattgat tcggtttatc
     2401 cgagcctcag cgattgtaga ggttgaaaaa gattatgtaa ccgttcaaga ggctttcaaa
     2461 gccagccgat ttgagatatt tgggaaacat gtagctcgca atgttttaat tcctattgtg
     2521 actcaaattg ggatggcctt gccgatgctg gtaacaggtg ctattattac agaaaccatt
     2581 tttgcatggc cgggggttgg tccctatttg acttcagcta caaagagctt agattatccg
     2641 gttataatgg cagtcatgct cttgtcagct accttggtta ttctagggaa tctcttatca
     2701 gatattctct atgctgtagt ggatccgcgt atttggaaag gaggagaagg tcaatgattt
     2761 tgaagcaatt taaggagact gtaaagagtt cgccactcta tttattctcg attttgttca
     2821 ttctttttct actattttta tccttgattg caccaatgat accgatagat ccaaatgtga
     2881 ccgacgttag tcagatgaac cagggtccta gtgcagagca ttggtttggt acagatcagg
     2941 tgggccgtga ttacttcatt cgagtgattt atggtggtcg catttcactc ctggttggtt
     3001 tattggcaat gactgcttct gttacgattg gaagtcttgt tggtattaca gcaggctatc
     3061 ttggaggaaa atgggataat gctattatgc ggtttgtcga tgtcctatca tccatacctt
     3121 ggttggtctt agttatcgtc ctcagcgtct ttctgaaacc aggtttgact acgattatca
     3181 ttgtaatagg tggtttttct tggatgagta ttgctcggat gttgcgtgct gaaacattga
     3241 aagctaaagt ggcggattat gttgggtatg ctgcctttat tggtttaaag aaaccagtga
     3301 ttgtctggcg gcatatcttt ccagcaatcc ttccgacttt gattgtgacc gcttcaacta
     3361 gtatttcatc agctattatg acggaatcag ccctcagctt cttaggaatg gggattcaac
     3421 aacctctagc atcctgggga agtctcttgc aaaatgccca gtctaccttg cagagtgctc
     3481 ctcatatggc aatattgcct ggacttttta tcctattgac catttattca tttaacaata
     3541 tcggtgatct gatacgggat tgccttgaaa gagaggtcta ctaatgtcaa aacagttagt
     3601 cgaaataagt aacctcacca ttgtcaataa aaagagaaaa ggacaatcga tactggtgaa
     3661 ggggattgac ctgtctattc ccaaaggaaa aattgtaggt attgttggag agtctggttc
     3721 aggtaagagc ttgtcgatga agtctctgat gggcatttta ccaaaaggtt tggaagcaag
     3781 ctttgatcgt tttgggatga atggtcagca agttgtaaat ccaaagctac tttccttatc
     3841 gatgattttt caagatccaa tgacctctct taatcccttg cggacagtag gttatcattt
     3901 gcaggaagtt ctaagacgtt ttcaacccaa attgactaag gaagaacggg acagaactat
     3961 ccatgaaatg ttggaaaagg tgggaattcc tgatccagaa ttacgtctca agcagtttcc
     4021 ttttgaattt tcaggaggta tgcgtcaaag gatcatgatt gccatggcct tgttgaccaa
     4081 gccagatatg ctcattgcag acgagccaac aacagcatta gatgtaacca ttcaggctca
     4141 aatcttggcc ttgctcaaag aattacagga acagttgggg ttgacagttg tgatagtgag
     4201 tcatgatttc agtgttattg ctggaatctg cgacttggtt tatgtcatga ggaatggatt
     4261 ggttgtggaa cacggaacgg ttgattctat cttttcacaa cccttacacg catataccca
     4321 gtctctatta agagcagctc gtttggaagc cagtcttgga gcggttttag ccgactccga
     4381 agatagtcag ttgattcaag ttagtccagg acattgggtt agaaaggagg agaagaatgg
     4441 ataaggaagt tctagtacag gtttcggatg tgagcaaaac ttactctaag aagaattggt
     4501 ttgggcaaga gcaacgtgtc gatgctttga acggtgtaaa tgtgtctatt tataaaggtg
     4561 agacacttgg tctggttggt gaatcaggca gtggcaaatc gacactttct aaaattgtct
     4621 taggattgga aaaggctagt caaggccggg ttgattttcc aggtttgaca tcagaagaat
     4681 taaataatca agccctgcaa gtgatttatc aagaccccta ttcttctctc aatccctacc
     4741 tgtcagcctt agaactggtc aaagaacctc tctactcact tcctaagaag gaggcggaag
     4801 agaaggctct agctatgctg gaaagggtgg gaattctggg ggatgctgta cacaaacgcc
     4861 ctaaatcttt tagtggtggt caacgccaac gaattggcat tgctcgtgca gttgtttcac
     4921 atccaaaatt tatcgtctgt gatgaaccga cctcggccct tgatgtgtcg attcaggcga
     4981 ccatactgga tttgttgaac cagttgcaag aggatttagg actgacctat ctcttcattt
     5041 ctcatgattt aaacttggtg aaccaattcg cagatcgtat tgcggtcatg tacaagggaa
     5101 gcttggttga aattggtcca gcacaggata ttttccaaaa tccccaacat ccctataccc
     5161 gctacctctt gcaatccaat ctgagccttg atccgctgga ggcacgtgct cagttgcaag
     5221 agttatctca aactgggctt ataaaggatt ttgtaacaga tggtgtatgg actcaggtgg
     5281 ataaggaaca ttttgtacta aaggcaactg ataaataatt tttatcagcc cataaaactt
     5341 ctatattaga cagggctagg tagccatgct acaattgaaa aaatgaaaga aaggagtttc
     5401 ttatgggaaa agttatcatt ggaatttcag gaaatgagca agaatttcca actaaatctg
     5461 gtcgcgtata tgtaacggta gcgcgtgaat tggcagacag cgttcgtcag gcaggtggtg
     5521 tgccaatggt tattcctatg ggaactccta acttagccaa ggattatatc gatatgattg
     5581 acaagttgat cttgtcaggt ggtcagcatg tggatccaag tttgtatggc caaaaacgtt
     5641 tgatagatag tgatgactac ctcttggaac gggatgaatt tgaactggct ttgattgagg
     5701 aagcccttcg gcaaggaaaa cctatttttg cagtctgccg agggatgcag ttgctgaatg
     5761 ttgctctagg cggaagcttg gaacaagagg tggctgatca ttggcaagag ggtatcgagg
     5821 gaacatctca tcgtttacaa gtgaaaccta aaagtcgaat cggtcaactg tttgcccaag
     5881 ggagccctat taattccttc catcatcagc gaatcaaaga attggctcca ggactggtgg
     5941 cgacaggttt ggatcctaga gatggtacga tagaagctta tgaaagtagg gggaaccaag
     6001 ctttgtttgg tatccaatgg catccagaat ttttatacaa tgattgtaag caacatcgag
     6061 acctgtttca gtatttagta gatatatttt aagaggggta tccctctttt tattat
//
LOCUS       DASGAC010000132         6034 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.133, whole genome shotgun sequence.
ACCESSION   DASGAC010000132 DASGAC010000000
VERSION     DASGAC010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6034
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.133"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            52..6030
                     /locus_tag="U1335_001709"
     CDS             52..6030
                     /locus_tag="U1335_001709"
                     /inference="COORDINATES: protein
                     motif:HMM:NF017180.1,HMM:NF019216.1,HMM:TIGR01167.1,
                     HMM:TIGR01168.1"
                     /note="The YSIRK form of extended signal peptide directs
                     nascent proteins to the cross-wall site, while signal
                     peptides lacking YSIRK direct proteins instead to the cell
                     pole. A large fraction of YSIRK proteins are surface
                     proteins anchored by sortase-mediated processing of a
                     C-terminal LPXTG motif; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HEM5232167.1"
                     /translation="MFWKEKQNKFSIRKFNRGVASVIIGMTAALFFVPNLAIKAELTA
                     LAHTNVAREQISYKYVLYSELTSDEKARIQATIPARQVWDTHTYYMVYRPKTNLPQTG
                     DIPTFTSSLVGLGLLIIGLSLTKDRKKRIVRSLIILTATSSLSVAAISTGSLSGFDKQ
                     FTLSIGEALPQAVISIDQHEFVGYILEGHVNSEAIKVSEAIIGEQGSSSELILPNILV
                     EGISKHSEAPIVDDIIPEEPTAPVAPSEPITEQPVAPVPPATDDEVQPEEPTDPVVPS
                     APVTEEPEVPVTPVPPSTEDEVLPEEPTAPVVPSEPVTEQPEAPVPPSTEVEVQPEEP
                     TAPVVPSEPITEQPEAPVPPATEDEVLPEEPTAPVAPSSPVTEQPEEPETPIPPSTED
                     VVQPEEPTAPVVPSTPVTEQPEEPKTPVPPSTEAEVLPAEPTDPVAPSAPVTEEPEAP
                     VPPSTESEVQPEEPTAPVVPSEPVTDEPKVPETPVSPTVEDEVQPEEPTAPVVPSSPV
                     TEEPEVPVTPVPPSTEDDIIPEEPTAPVAPSSPVTEQPEEPETPVPPATEDEVQPEEP
                     TEPVVPSSPVTEQPVAPVTPVPPSTEVEVQPEEPTAPVVPSSPVTEQPEEPIKTKPKL
                     VLSILKENVDDKTVELSYTLTDSDSTFVKVLVSLYKGDELVTEKEILTQEELYKVRFA
                     NLLLNTEYKVKTRFAYNLGSDDVEEELGTEKFELENKLLELREYKSIELYQVDEFGEK
                     TRVTALTSAPISSENYLVKISTVNNKDIYLPVDNFENDVNGIKVSIIHPKLVKFNQNN
                     SSFDEHYTFTVDKLVLQEGAYSKFSELVDAINNNPSGTYYLAADMVVDKEVSTDTYIT
                     KEFTGSLKSLGDHKTYSILQLDKPLFSTLKNARVENISLKDVAISNDQTEVAALAKKS
                     DKSTIDKVSVSGNITAKQNIAGIVYNATNGTTISNSIVNVNLSNTASHETYHLGGVTG
                     ILNSSTIDKVRVNVAIDAKTASGRGQKIGGVTAEMIMLTQQSVMTNVYVTGKVEASAP
                     ADTGGVVGLARMSVLNNIATGASVTNGGIIASGQTQSATAWSSISNLYSVEGHAAGQP
                     NPTIQSTSLSQEAVLEKITAWGIPTTPTTTGQENSDSQSNSVQTIDYNQVQNAQAERR
                     TAYENTAKLLPFYDRNTIVKYGNLIDEASNLYSKPIQSVLTLNEDGVATNIYDQHASL
                     TKLLIHYEDGTSEVLPLVFKGEYGNTKVVEYRLGDQLLYTPEQLLSLETSLIDDLVQE
                     FSRVELYSEKMAEVLHIKTADKHAKLKDLYLDESFAEVKANLEEHIKGLLANRLVVDT
                     TSKAVRDVIKKEFLADKEKIMFALAYLNRLYGIKYGDTNIKNIVLHHADFYNRQLDTL
                     EWLKSFTDKITKDTDQYYVSQQGYEDMYFDRLTLANNAEIHKERFGALSSQLGTVRDF
                     LEYNKKLFLGETDSRKWFKEATNAFVYEIPSNANSSIDTSLYSHLGRIPRYEKYYLPL
                     LNIKEKDDIFVMSSMATVAFGGYGRYVDTALKKTNPEQYYQAVKTVQTSLIPKHGKRL
                     GDFLDMWYQMADSHLRDKFIQRSTEIWDGYWIKDSNAFEDQTDKRRWADKYDQEYRYV
                     QELAGALNEWHRKSNDSAFSDTVTFVKFSNRDMLSDLGDSTMSHELVHNYDETIMLDG
                     YKRRPGQDAESYAMGLLQSSAGGGIYYYGFNFMNEYSPNTPHNVSSSRFKTKEDLQTY
                     LKGIFDVTYLLDAVEIEAIATKGKEAYPYFFNKIELVPATEAHTNQIPGYQNTHDRIR
                     KLSDVELANLNISTINDAIDHALVAKTSLLPEQDYLRENLKNYYFVPLYYPIYAGLQN
                     NSGTVGGLQFRKTALELLAAKGWEEGFIPYATDKLKAEAEAAGRPLSDQFIFEKIFAN
                     QYADYTSFKKAMYKERWDKKDRLKAITISFNGQTETIDNIETLSRLMAEAVDKDYQAA
                     QNGQIGFNRQGLKDSVLKAYVKLTDSFSSSIFGE"
BASE COUNT         2004 a         1237 c         1247 g         1546 t
ORIGIN      
        1 gaaaaatatg ctatactttt aagtaagaag aaacaaacga aggagcttca tatgttttgg
       61 aaggaaaagc aaaataagtt ttctattcgc aaatttaata gaggcgttgc atcagttatt
      121 attggtatga ctgccgcctt attttttgta ccaaatttgg ctattaaagc agaattgaca
      181 gctcttgccc atacaaatgt agcaagagaa cagatatcct ataagtatgt cctttattcg
      241 gaactgacat cagatgagaa ggcacgaatt caagcgacca ttccagcaag gcaggtttgg
      301 gatacccata cttactatat ggtctatcgg ccaaagacaa atttgcctca aacaggagat
      361 ataccgactt ttacaagtag tctggttggt ttagggctat tgattatcgg tctatctctt
      421 acaaaagata ggaaaaaacg aattgttaga agtctgatta ttttaactgc tacaagtagt
      481 ctgtcagtgg ctgcaatttc tacaggtagc ctctcaggtt ttgataaaca atttaccctt
      541 tccataggtg aagctttgcc acaagcagtg atttctatag atcaacatga atttgtaggt
      601 tatattttag aagggcatgt taattctgaa gcaatcaaag ttagcgaagc aattattggt
      661 gagcaagggt catcgagcga attgatattg ccaaatatat tggttgaggg aatatctaag
      721 cattcagaag ctcccattgt tgatgatatt attcctgagg aaccaacagc gcctgttgcc
      781 ccaagtgaac caataactga acaaccagta gcccccgttc caccagctac agacgatgaa
      841 gttcaacctg aggaaccaac agatccagtt gtcccaagtg ccccagtaac ggaagaacca
      901 gaggttccag tcactcccgt tccaccatca acagaagatg aagttctacc cgaggaacca
      961 acagcgccag ttgtcccaag tgaaccggtt actgaacaac cagaagcccc cgttccacca
     1021 tcaacagaag tcgaagttca acccgaggaa ccaacagcgc ctgttgtccc aagtgaacca
     1081 ataactgaac aaccagaagc ccccgttcca ccagctacag aagatgaagt tctacctgag
     1141 gaaccaacag cgccagttgc cccaagttct ccagttactg aacagccaga agaaccggaa
     1201 actcccattc caccatcaac agaagatgta gttcaacccg aggaaccaac agcgccagtt
     1261 gtcccaagta ctccagttac ggaacaacca gaagaaccga aaactcccgt tccaccatca
     1321 acagaagccg aagttctacc cgcggaacca acagatcctg ttgccccaag tgccccagta
     1381 acggaagagc cagaagcccc cgttccacca tcaacagaat ccgaagttca acccgaggaa
     1441 ccaacagcgc ctgttgtccc aagtgaaccg gttacggacg agccaaaagt acctgaaaca
     1501 ccagtttctc caacggttga ggatgaagtt caacccgagg aaccaacagc gcctgtagtc
     1561 ccaagttctc cagttacgga agaacccgag gttccagtca ctcccgttcc accatcaaca
     1621 gaagatgata ttattcctga ggaaccaaca gcgcctgttg ccccaagttc tccagttact
     1681 gaacaaccag aagaaccgga aactcccgtt ccaccagcta cagaagatga agttcaaccc
     1741 gaggaaccaa cagaaccagt tgtcccaagt tctccagtta ctgaacaacc agtagccccc
     1801 gtcactcccg ttccaccatc aacagaagtc gaagttcaac ccgaggaacc aacagcgcct
     1861 gtagtcccaa gctctccagt aacggaacaa ccagaagaac ctattaaaac caaaccgaag
     1921 ttagttttat caattcttaa agaaaatgta gatgataaga ctgtagaact aagctataca
     1981 ctgacagata gtgattccac atttgtcaag gttttggtat ctctatacaa aggggatgaa
     2041 ttagtcacag aaaaagaaat tctaacacaa gaagagctat acaaggttcg atttgctaac
     2101 ttactactga acactgaata taaagttaaa acacgatttg cctataattt aggtagtgat
     2161 gatgtggaag aagagctcgg aacagaaaaa tttgaactag aaaataaatt actggaatta
     2221 cgagaataca agagtattga gctgtatcaa gttgatgaat ttggcgagaa aacaagggtc
     2281 acagccttga ctagcgctcc aatttcttca gaaaactacc ttgttaagat ttctactgta
     2341 aacaataaag atatttacct ccccgttgat aacttcgaga atgatgtcaa tggcattaag
     2401 gtgagcatta ttcatccaaa attagtaaaa tttaatcaga acaattctag ttttgatgaa
     2461 cactatacct ttacagttga caagcttgtc ttacaagagg gggcctacag taaatttagt
     2521 gaattagtag atgctatcaa taacaatcct agtggaactt attatctagc tgctgatatg
     2581 gttgttgata aggaggtttc gaccgacacc tacattacca aagaatttac tggaagtctg
     2641 aagagtctag gtgaccataa gacttattct attttgcagt tggataaacc gcttttcagc
     2701 acgctcaaga atgcaagggt agaaaatatc tccttaaaag acgtggctat ttcaaacgac
     2761 caaacggaag tagcagctct agctaagaaa tcagacaagt ctaccatcga taaagtttct
     2821 gtttcaggga atattactgc caaacaaaat attgctggta ttgtctataa cgctacaaac
     2881 ggtacgacca ttagtaattc aattgttaat gtgaacctaa gcaatacagc aagccatgaa
     2941 acttatcatt tgggtggcgt tacaggaata ctaaatagtt caaccattga caaggtaagg
     3001 gttaatgtgg caattgatgc taagacagca agtggccgcg gacaaaaaat tggtggtgtc
     3061 acagcggaga tgataatgct aacccagcaa tcggttatga caaatgtcta tgttacagga
     3121 aaagtagaag ccagtgcccc cgctgataca ggtggtgtag ttggattagc taggatgtct
     3181 gtcttgaata atattgcaac aggtgcatct gttacaaatg gaggtatcat cgcttcgggt
     3241 caaactcaat ctgccacagc atggtcaagc ataagcaatc tgtatagtgt tgaaggtcat
     3301 gcagcaggcc aaccaaatcc taccattcag tctacaagcc tttctcaaga agccgtgcta
     3361 gagaaaatca cggcatgggg aattccaaca acaccaacca cgacaggaca ggaaaatagc
     3421 gacagtcagt cgaattcagt gcagaccatt gattataacc aggttcaaaa tgctcaggct
     3481 gaacgaagaa ctgcctatga aaacactgct aagttgttgc ctttctatga ccggaatacg
     3541 attgttaaat atggtaactt gattgatgaa gcaagtaatc tctatagcaa gcctatccag
     3601 tcagttctga ccttgaatga ggatggagta gcaacaaata tctatgacca acacgcttcc
     3661 ttgaccaaat tactgatcca ttatgaagat ggaacttcag aagttctgcc tttggtattt
     3721 aagggagagt acggcaatac caaggttgtt gaataccgct taggtgatca gctcctctat
     3781 acaccagaac aattactatc tctggaaaca agtctaatcg acgacctagt tcaagaattt
     3841 tctcgagttg aactctatag cgaaaagatg gccgaggtcc tacatatcaa aactgcagac
     3901 aagcacgcca aactaaaaga cttgtattta gatgaatcct ttgcagaagt caaagccaat
     3961 cttgaagaac atatcaaagg tttgctggcc aatagactgg tagttgatac cacaagcaag
     4021 gctgtcaggg atgtcattaa aaaagaattc ttggcagata aagaaaaaat tatgttcgcc
     4081 cttgcctacc tcaataggct atatggcatt aaatatggag ataccaatat caagaatatt
     4141 gtgctccatc atgcagattt ttataatcgt caacttgata ctcttgagtg gttgaagtca
     4201 tttacagata aaatcaccaa ggatacagat cagtattatg tttcacaaca aggctacgaa
     4261 gatatgtatt ttgacaggtt aacgcttgcc aataatgcag aaattcataa agaacgtttt
     4321 ggagcactct ctagtcaact tggaacagtt cgtgatttct tggaatacaa taagaaattg
     4381 ttcttgggag aaactgattc aaggaagtgg tttaaagaag cgaccaatgc ctttgtttat
     4441 gaaattccat ccaatgcaaa ctctagcatt gacaccagtc tatatagtca tctgggacgt
     4501 attccacgct atgaaaaata ctacttgcca ttgctgaata tcaaggagaa ggatgatatt
     4561 ttcgtaatga gctcaatggc aacagtagcc tttggtggtt atggaagata tgtggatacg
     4621 gctttgaaaa agaccaatcc agaacaatat taccaagcag ttaagacagt acagacaagt
     4681 ctgataccga aacacgggaa acgattaggt gactttttgg atatgtggta tcagatggca
     4741 gattctcatc tgagagacaa gtttatccaa cgctcaactg aaatttggga tggttactgg
     4801 attaaggatt caaatgcatt tgaagaccaa actgataaac gtcgttgggc agataagtat
     4861 gaccaggaat accgctatgt tcaggagttg gcaggtgcct tgaatgaatg gcatagaaaa
     4921 tcgaatgata gtgccttttc agacacagta acctttgtaa aattctcaaa tcgggacatg
     4981 ctatcggatt taggtgattc gaccatgagc catgaattgg tccataacta tgatgaaact
     5041 atcatgttgg atggttataa gcgtcgtcct ggtcaagatg cagaatccta tgctatgggc
     5101 ttgttgcagt catcagctgg tggaggtatt tattactatg gatttaattt catgaatgaa
     5161 tacagtccaa ataccccaca caatgtttca agtagtcgct tcaaaacaaa agaggatttg
     5221 caaacctatc taaaaggaat ctttgatgtt acctacctct tggatgcggt tgaaatcgaa
     5281 gcgattgcta ctaaggggaa agaggcttat ccttacttct ttaacaagat agagttggtc
     5341 ccagccactg aagcacacac caatcagatt cctggctatc aaaatactca tgatcgcatt
     5401 aggaaattaa gtgacgtgga actagctaat ttaaatatta gtacgatcaa tgatgccatt
     5461 gatcatgccc tagttgccaa aacatcactg ttaccagagc aagactatct acgtgaaaat
     5521 ttgaagaact attatttcgt accgctttat tatccgattt atgcaggctt acaaaataat
     5581 agtggtactg tcggtggttt acaattccgt aagacagcct tggaacttct tgctgcaaaa
     5641 gggtgggaag aaggctttat tccttatgca acagacaagc taaaagcgga agcagaggcg
     5701 gcaggtcgtc cattatccga tcagtttatt tttgaaaaaa tatttgctaa tcaatatgcg
     5761 gattatacaa gcttcaaaaa agctatgtac aaagagcgct gggataagaa ggatagactg
     5821 aaagccatca cgattagctt caatggtcag actgagacaa tagataatat tgaaacgctg
     5881 agcaggctga tggcggaggc agttgataaa gattatcagg cagctcagaa tggtcaaata
     5941 ggatttaatc gtcaaggttt gaaagattct gttctgaaag cctatgtcaa gctaacagat
     6001 agtttcagtt cctctatatt tggagaatga tgga
//
LOCUS       DASGAC010000133         5823 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.134, whole genome shotgun sequence.
ACCESSION   DASGAC010000133 DASGAC010000000
VERSION     DASGAC010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5823)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5823)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5823
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.134"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(167..742)
                     /locus_tag="U1335_001710"
     CDS             complement(167..742)
                     /locus_tag="U1335_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002925829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEM5232168.1"
                     /translation="MEYPMTQDFFPIHTLDTVRPDLKENLETVKKNNGGYIPNLIGLL
                     ANSPTALETYQTVGGINRRNSLTPTEREVVQITAAVANGCGFCVAGHTAISIKQIKMP
                     DEILQALRQGTPIETDAKLDALARFTLAVIHEKGKVEQPLLEEFFQEGYTDENALDVV
                     LGVSLATLCNYANNLINTPINPELQAYALEN"
     gene            complement(896..1591)
                     /locus_tag="U1335_001711"
     CDS             complement(896..1591)
                     /locus_tag="U1335_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5232169.1"
                     /translation="MKALIFDVDDTLYDQIQPFERALERHFEVAREQIEPLYLSFRRY
                     ADEVFEATAIGKMSLKDSHIYRMKHALADFGYQVSDATALAIQIDYDYFQGQIELSPV
                     FPEIFSWCQAQGIAMGIITNGPYRHQLRKIRTMGLVNWFELEHVLISGQVGITKPNPA
                     IFQLMGERLGMSGEDICYLGDSFENDVVGAKAANWKAIWFNHRKRIEPIAPYQADKVV
                     TDWDELVEVIQSF"
     gene            complement(1645..3384)
                     /locus_tag="U1335_001712"
     CDS             complement(1645..3384)
                     /locus_tag="U1335_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5232170.1"
                     /translation="MTILGFLLKQIGRVKWLFIVAVGFYLLASTMVRLAPLLIQQAID
                     GPITDLSKGLPFDEAVFLNQSAQYMGMIILGAIGFYLSMRLLMHCANRIAENLRNQAY
                     DVMQRLPISYFDDKPAGKIATRIVNDTETLRTQFYGTLVNAFNNIVRLLFTYGVLFYM
                     NRSLGWLMLLLIPLYIGIQFAYKKMTDKPMKDFYDARSDVNTQVNETMNGASLIQLFG
                     QEERIMKEFEVTADKMRRADNKIIWAQSLATWNLSGFLQNLVIAAILTVVGYQFLAGQ
                     DGVTAGKLFVYVNYIEGVFIALGALVQQFPNMLRSFETGKRLMALLEEEVEDDCNRIL
                     EVEQGQVVFEHVNFSYEANRPVLKDITIRAEKGETVALVGHTGSGKSSIMNLLYRFYD
                     PQEGRVLIDGKNIRDYSRESLRSHMGIVLQDPYLFTGTIASNVSMNEEEADRTRIMQA
                     LEKVGAGPMLSRLEKGIDEPVVEKGAAFSSGERQLIAFARTLYSDPKILILDEATSHI
                     DTETEEIIQHAMEVVKEGRTTFIIAHRLSTIQNADQILVLDQGRIIEHGKHEELVARG
                     GVYAQMHEIQAKV"
     gene            complement(3384..5111)
                     /locus_tag="U1335_001713"
     CDS             complement(3384..5111)
                     /locus_tag="U1335_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5232171.1"
                     /translation="MFRLIFDYIKRHKWLYLLVAVTLIIYDATLLLPTQIIQRMVDIL
                     TKNELTQAILVQEITLLLLVTVLNYATAFIWHLKLFQASVNFKFDMQQRAFKKLVTMR
                     TPFYEKFRSGDVMTRFSTDVDGLMEMVGYGLMIVVYAGGMLAFIIPTMFFIDWKISLV
                     ALLPMLFMTLGIFFIGRKQDKAIDANREAVAQLNNEVLEVIEGIRVTRAYSKKANQKA
                     QFQARTKQLAQGGDRITSLQSLYNPLATVCLGLSTIFVLLMGAQAVKAGQLTLGQVIA
                     LQLYVGSLLEPFWTLADFILVYQTGKTSFEKLQELIETGDDLEADGSKEIAELSSISF
                     KNYSFSYPQAERASLQDINWTLKAGQTVGIVGKTGSGKTTLVRQFLRQYPIGQGNFFI
                     NHQSVLDFKRSSIEEKIGYVPQEHILFSRSVGENIALGKVASSSEEIEQAIATAAFSQ
                     DLKRMTDGLDTMIGERGVSISGGQKQRISIARAFLREPDLLILDDSLSAVDARTERQI
                     IQNIQKERAGKTNVIVTHRLSAVNHADWVLVLDEGRIVEEGRPADLLAQRGWYYEQYQ
                     RQQSQEGGE"
     gene            complement(5681..5753)
                     /locus_tag="U1335_001714"
     tRNA            complement(5681..5753)
                     /locus_tag="U1335_001714"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5718..5720),aa:Thr,seq:ggt)
BASE COUNT         1767 a         1337 c         1028 g         1691 t
ORIGIN      
        1 tttcaataga cttttacatt taaattttaa tttctgcctg aagaaagaaa aggggatttt
       61 ttgaaactac tttctatttt ctaacttttt tataaaaata gtttcacttg ttagaactga
      121 aaaaccagcc gatttttccg actggttttt actctattct atttactcaa ttctccaaag
      181 cataggcctg taattctgga ttgataggag tgttgatgag attgttggca taattacaaa
      241 gagttgcaag actgactcct aacaccacat ccaaggcatt ttcatccgtg tagccctctt
      301 ggaaaaattc ctctagcaag ggctgttcaa ccttgccttt ttcatggata acagccagag
      361 taaatcgagc gagagcatct aatttggcat ccgtttcgat tggtgtcccc tgacgaagag
      421 cctgcaaaat ctcatccggc atcttgattt gcttgataga tatagcagtg tgaccagcta
      481 cacagaagcc gcaaccatta gcaaccgctg ctgtaatttg tactacttcg cgttcagtcg
      541 gtgttagact attacgacgg ttgatgccac cgactgtctg ataggtttcc aaggctgttg
      601 gagaattggc caaaagacct attaaattgg gaatgtagcc accgttattt ttcttgaccg
      661 tttccaaatt ttctttcaaa tcaggtctaa cagtgtccaa ggtatgaatt gggaaaaaat
      721 cttgtgtcat aggatactcc atttcaaaaa atttcataga gtaggaataa aaatctgctt
      781 ggattcacac ctatacttct atgcttacat tttatgctat cataaagaca ggtattctac
      841 taatatattt tacctatcac acctataaaa aattgataat cccttgcaga aaccactaga
      901 aagactggat aacttcgacc agttcatccc aatctgtcac cactttatct gcctgatacg
      961 gagctattgg ctctattctc tttctatgat taaaccaaat tgccttccaa ttcgcagctt
     1021 tcgctcctac cacatcattt tcaaacgaat ctcctaaata acaaatatct tcgcctgaca
     1081 tccccaaacg ttctcccatt agttgaaaaa tagcaggatt tggctttgtg ataccaactt
     1141 gtccagaaat taggacatgt tctagctcaa accaattaac taaccccatc gtgcgtatct
     1201 ttctcaactg atgtctataa ggtccattcg taataatccc cattgcaatt ccttgcgcct
     1261 gacaccatga aaatatctct ggaaacactg gactgagctc tatctgccct tgaaaataat
     1321 cataatctat ttgaatagct aaggctgttg catcagacac ctgataccca aaatctgcca
     1381 gagcatgttt catccgataa atatgactgt ctttcagact catctttcca attgctgtcg
     1441 cttcaaatac ttcatccgca tatctgcgaa aggaaaggta gagtggttca atttgctccc
     1501 ttgctacttc aaaatgtctt tccaaagcac gttcaaacgg ttgaatctga tcataaagcg
     1561 tatcatctac atcaaaaatt aaggctttca tgagtcaatt atagcaaaaa attccagcca
     1621 aagcttggaa tttttaactg cttattacac ctttgcttga atctcatgca tttgagcata
     1681 tactccacca cgtgcaacca attcttcatg cttcccatgt tcaataattc gaccttgatc
     1741 taagacaaga atctggtctg cattttgaat ggtagaaagt cggtgggcaa tgataaaggt
     1801 tgtccgacct tctttcacca cttccatagc atgttggata atttcttccg tctccgtatc
     1861 aatatgagaa gttgcttcat ccaatatcag aattttagga tcagagtaga gtgtccgcgc
     1921 aaaggcaatc aactgacgtt ccccacttga aaaggccgcc cccttctcaa caaccggttc
     1981 atcaatccct ttctctaagc gagatagcat aggccctgca ccaacttttt ctagcgcctg
     2041 catgattctt gttctatctg cttcctcttc attcatggaa acattgctgg caatcgtccc
     2101 tgtaaagaga tagggatctt gcaaaacaat ccccatgtga ctgcgcaggc tttcacgaga
     2161 ataatcgcgg atgtttttcc catcaatcag tacacgtccc tcctgtggat catagaaacg
     2221 atagaggagg ttcataatag aagacttacc agacccagta tgcccaacca gagcaactgt
     2281 ttctcctttt tctgcccgaa tggtaatatc tttcaaaact ggtctgtttg cttcatagct
     2341 aaagttcacg tgttcaaaca cgacttgccc ttgttcaact tccaaaatac gattacagtc
     2401 gtcctccacc tcttcttcta gaagggccat tagacgctta cctgtttcaa acgagcgaag
     2461 catatttggg aactgttgaa ccagcgctcc caaagcaatg aagactcctt cgatatagtt
     2521 gacataaaca aagagtttcc cagctgtaac tccatcctgt cccgcaagaa actgatagcc
     2581 gactaccgtt aaaatcgcag caatgaccaa attttgcaga aaaccactca gattccacgt
     2641 ggcaagagac tgggcccaga taatcttatt atctgcccga cgcatcttgt cagcagtcac
     2701 ttcaaattct ttcatgatgc gctcttcttg tccaaaaagt tgaatcaaac ttgcaccatt
     2761 catggtctca ttcacctgcg tattgacgtc actccttgca tcataaaaat ccttcatcgg
     2821 cttgtctgtc attttcttgt aagcaaattg aataccgata tagagtggta tcaagagtaa
     2881 catcagccaa ccaagactcc tattcatgta aaataggaca ccgtatgtaa agagcaaacg
     2941 aacaatattg ttaaaggcat taactaaggt cccataaaat tgtgtccgca gagtttctgt
     3001 atcattgaca attctagttg caatttttcc agcgggctta tcatcaaaat aagaaatagg
     3061 caaccgttgc ataacatcgt aggcttgatt acgtagattt tcagcaatac gattggcgca
     3121 atgcatgagt aaacgcatag ataggtagaa gccaatagct cccagaataa tcattcccat
     3181 gtattgagct gactggttta agaaaacagc ttcatcaaaa ggcaaaccct tgctcaaatc
     3241 cgtaatcgga ccatcaatcg cctgctgaat cagcagagga gccaatcgaa ccatggtcga
     3301 agccaataga tagaagccga cagctactat aaatagccac ttaacacgac cgatttgttt
     3361 taataaaaaa cctaaaatag tcattactct cctccttcct ggctttgttg tcgttggtat
     3421 tgttcatagt accaacctct ttgggcaagc aaatcagctg gacgcccttc ctcaacgata
     3481 cgcccctcat ccaagactag tacccaatct gcatggttga cagcagatag acgatgggtc
     3541 acgatgacat tggtttttcc tgcacgttct ttttgaatat tttggataat ctggcgttct
     3601 gtccgagcat ccactgccga caaagaatca tctagaatca gcaaatctgg ctctcgcagg
     3661 aaagcacggg caatagaaat ccgttgtttc tgaccaccag aaatagacac accccgctcg
     3721 ccaatcatgg tgtcaagacc atcagtcatc cgttttaaat cttgactaaa agctgctgtg
     3781 gcaatggctt gttcaatctc ctcagagcta ctagctactt tcccaagggc aatattttct
     3841 ccaacagacc ttgaaaacaa aatgtgttct tggggaacat agccaatttt ttcctctata
     3901 ctagaacgtt taaagtctaa aacagattga tgattgatga aaaaatttcc ctgaccaatc
     3961 ggatactggc gtaagaattg gcgaaccaag gtcgtttttc ccgaaccagt tttcccaacg
     4021 atacctacag tttgccctgc tttcagtgtc caattaatgt cctgtaggct ggctctttcc
     4081 gcctgtggat aactaaagct ataatttttg aaggaaatac tagacagctc tgcaatttcc
     4141 ttagaaccat cagcctccaa atcatcaccc gtttcaatca gctcctgcag tttttcgaaa
     4201 gacgtcttac cagtctgata aacaaggatg aaatctgcta gtgtccaaaa cggctctaaa
     4261 agcgaaccga catacaattg aagggcaatt acttgtccca aggtcagttg ccctgctttc
     4321 acggcttgtg cccccatgag aagcacgaaa atagtagaca atcccaaaca gactgtggct
     4381 aatggattat acaatgattg caaggaagtg atgcgatccc caccttgagc caattgcttg
     4441 gtacgagctt gaaattgagc cttttgattt gcttttttac tataagctcg agtcactcga
     4501 atgccttcga tgacctccaa aacttcatta ttgagctggg ctacagcttc tctattggcg
     4561 tcaatcgcct tatcttgttt tctcccgata aaaaatatac ctagtgtcat gaacagcatc
     4621 ggtagtaaag ctactagcga aattttccaa tcaataaaga acatcgtggg aatgataaaa
     4681 gccaacatac cgcctgcata gacgacaatc ataagaccat aacccaccat ctccatcagg
     4741 ccatccacat ccgttgaaaa acgagtcatg acatctcctg agcggaattt ttcataaaat
     4801 ggagtccgca tggtcactaa ttttttaaag gcacgttgct gcatatcaaa cttgaaattg
     4861 acagaggcct gaaataattt caggtgccaa atgaaggctg ttgcatagtt cagcactgtt
     4921 accaataaca ataaggttat ctcctgaacc aatatggcct gtgttaattc attcttggtc
     4981 agtatatcga ccatccgctg tatgatttgc gttggtagca aaagtgtggc gtcataaata
     5041 atcaaggtca cagcaaccaa tagatagagc cacttatgac gcttgatata gtcaaaaatt
     5101 aatcgaaaca tatatctcct ttacaaatct ataacctatc atttgccact ttattcaata
     5161 agcaacaatt gatagacgtt atactcaatg aaaatcaaaa gtagcctaga aaacgatgtc
     5221 gaagatagaa ctggagttca tcaaggcaag ttgacaacgg ataattttga ttttcgaaga
     5281 gtattacctt tctaagcgca caaaaaagcc tagggaagca tctcactcca cctaggcttg
     5341 cgtaagtcca caaaaataga ccagctcttg aacatagtcg acaattttta tcacaccatg
     5401 accacagtgc ttgattgtct caatgtttca aaatatagcc cacgaaaaac gacaaaagtt
     5461 catcaatgag ctttgttttc ctgcttagaa aggagtgtat gataaaaaat agcttgctga
     5521 atgacaagtt gcttgttcat ttgttttact cctttcatat ttctaagctc tattctacca
     5581 taataaacat tcatgtcaag ggattttttg acaataaggg cgaatttagg acaaaaataa
     5641 gaaaaaacct tgtcaaacaa ggcctttcta tagtattcga tgctagttgc cgggattgaa
     5701 ccggcgacct catccttacc atggatgcgc tctaccgact gagctaaacc agcagtactt
     5761 gactagtata tcatatctct aaaaaaagtc aagggatttt ttggaaatat tgaaaaataa
     5821 aga
//
LOCUS       DASGAC010000134         5780 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.135, whole genome shotgun sequence.
ACCESSION   DASGAC010000134 DASGAC010000000
VERSION     DASGAC010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5780)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5780)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5780
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.135"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            45..884
                     /locus_tag="U1335_001715"
     CDS             45..884
                     /locus_tag="U1335_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEM5232172.1"
                     /translation="MKKLKNIKPRWFVFICILIFLALGFDSRLQVTHYRLVSPKISQP
                     IRLALITDLHSSNYGKNQIQILETLEKEEPDIILLGGDIFDDELSDRKTLELLSGLGK
                     FNHTYYVSGNHEIWSNRYDQMLEHLRQQNVVGLSGNSSRVDVRGQSITISGVDDPEYF
                     QKYDTSESLLDQLEDIKGKQISTDFQVLLAHRPELIDTYQKYGFDLVLSGHAHGGQWR
                     VPYLVNGVFAPNQGFLPKYAGGLYEVENSYFIVSRGLAKESTRVPRFFNRPEIIIVDL
                     VNT"
     gene            complement(1189..2454)
                     /locus_tag="U1335_001716"
     CDS             complement(1189..2454)
                     /locus_tag="U1335_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5232173.1"
                     /translation="METETIIHNGKKVIKKIKKDKSISYTLKGAFLGKDVKTGKQVTT
                     TITAKTLKQLDREVIQARLEFERNGFTRKENVPINTLEDLAEAWFQAYQTWVSSHNTL
                     NRVRGYLDNYIIPKFGDYKPDKIESADIQLWLNDLAKKSKKSVESGVKRANKGCAKDF
                     GAVIHKLKDIFDYGITNYGLTSNPVNTIKIPPKPKSSKQRIMVLHDDSLARWLNYLES
                     LDNSRANRRFKLICNTLLASALRINELLALTIDDLNFEESSIGVNKTLLWKTANKKTG
                     TKGKVICKATPKTDAGNRSIPVPLSILEELRDFHNEMNEYLKLHNRPETKLIFPTIYG
                     NYMCDRNERTTLKNRLAGLGLPDYGFHLFRHTHASMLLNAGANWKELQVRMGHKSIST
                     TMDTYAELAPQRMLEAVGIYLDKIAELTQ"
     gene            complement(2543..2791)
                     /locus_tag="U1335_001717"
     CDS             complement(2543..2791)
                     /locus_tag="U1335_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003009477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM5232174.1"
                     /translation="MNNEKLEQIEQLLQTLIKLIQIKEQSRPLKIIQQRELLRQLNIS
                     PNTLKTWEQKGLKRLEPPIEGTRTVFYLLDDVIDFLNS"
     gene            complement(2784..3389)
                     /locus_tag="U1335_001718"
     CDS             complement(2784..3389)
                     /locus_tag="U1335_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003032321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HEM5232175.1"
                     /translation="MAKEQRSSKWTFLFYEESAPEDYLNILEELHIPFILSPWHNKDV
                     NRQTGEFKKSHKHGAFFFDSLKSYSQVSNIISDKLNGPAHVEVVMSPTGLFDYFTHAE
                     NPEKTPYNIEDIEVGCGFDLDKFLMEVKTSDFIHEVVDIIEENDFTEFEELVWYARAN
                     NTNLLGLIIERTYFFAKYLDSRRHNPNRLQTANTEEKDNDE"
     gene            complement(3595..4200)
                     /locus_tag="U1335_001719"
     CDS             complement(3595..4200)
                     /locus_tag="U1335_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003039416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232176.1"
                     /translation="MTTKTYFMRSFNFILNLLLIAPILYLFGWLFNSLSIQLNTNTLF
                     KLETVTTITDKISSISYGLALICLSLSLVLIGIEIVKRWKTDRLVNYVKSVYHTFSLR
                     NFLFQREKVQKVTSPEHQTVPTSIPVNNGFNRAVRKCMVDIQTDSVTIFIKVPRDQQG
                     QKILKDMEALLKEEIASQHTDYYFSSPIRVRNQLWFIGKKR"
     gene            complement(4197..5297)
                     /locus_tag="U1335_001720"
     CDS             complement(4197..5297)
                     /locus_tag="U1335_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000203861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEM5232177.1"
                     /translation="MTSQSHDVLNQSFLQSYLLQSLNMALGALMQGETSYTNSFNIII
                     KENGFIFVPRLPCAYILDDDLYNKIFLIANASLYPQFTLLKQNATYFVPLKTDDIHVQ
                     RGLFFPWKKGVSERLVIPDLDKFSANLPQGKIPIMKNFELNLDKVNHWAIAGNSGSGK
                     SFALTYFLSVLKHMSDLIIIDPKFDTPSRWARENHIAVIHPVENRSKSDFVSQVNEQL
                     SQCATLIQKRQAILYDNPNHQFPHLTIVIDEVLALSEGVNKNIKEAFFSLLSQIALLG
                     RATKIHLFLVSQRFDHNTIPISVREQLNVLLQIGNINQKTTQFLFPDLDPEGIVIPTG
                     HGTGIIQVIDNEHPYQVLPLLCPTYYTKRGIL"
     gene            complement(5297..5617)
                     /locus_tag="U1335_001721"
     CDS             complement(5297..5617)
                     /locus_tag="U1335_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003032314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232178.1"
                     /translation="MAFKMKTTKGGYTTTLADKIISQNLPIFSLSTELEPQQRFEDGK
                     PTGEIIAYKSWFVQEGQDPFQVKFEEKIKLPAFQSMIQFDTLQACEIKYNIYFKADGI
                     KEVR"
BASE COUNT         1736 a          963 c         1108 g         1973 t
ORIGIN      
        1 aaaatatttg ttcgttacag aaatttggta aaatagttcg aataatgaaa aaactaaaaa
       61 atattaagcc acgatggttt gtttttattt gtatcctaat ttttcttgct ttaggttttg
      121 acagtcggct tcaagtaact cattacaggc ttgttagtcc caaaatatct cagccaatca
      181 gacttgctct aattactgat ttacactcat caaattacgg taaaaaccag atacaaatct
      241 tggaaacatt agagaaagaa gagccagata tcattttatt aggtggagat atttttgatg
      301 atgaactttc tgacagaaaa actctagaat tgttaagcgg gctgggaaaa tttaatcata
      361 cttactacgt gtcaggtaat catgaaatat ggagtaatcg atatgatcag atgctggaac
      421 atctgagaca acagaatgtg gtcggattat ctggaaatag tagtagagtt gatgtaaggg
      481 ggcagtccat cactatttca ggcgttgatg atcctgaata ttttcaaaag tatgatacta
      541 gtgagagttt gctagaccaa cttgaagaca taaaagggaa gcaaataagc acggactttc
      601 aagttttact agcgcaccga ccagaactaa ttgatactta tcaaaagtat ggatttgatt
      661 tagtgttatc tggtcatgcg catggaggac aatggagagt gccttatttg gttaatggtg
      721 tatttgcgcc taatcaaggt tttcttccga aatatgcagg tggtttatat gaagttgaaa
      781 attcgtattt tattgtaagc aggggtctgg ccaaagaatc tacacgagta ccaagattct
      841 ttaatcgccc agaaattatc attgtagatc ttgttaatac gtaacttcac ttctttctaa
      901 tcactcaaaa acccactgac ttaattagcc agtgggttta ttacttatcc gaatcaaaat
      961 cttatttcaa aaaaggtagt gattcgactg atttgcactg caatgtaatg aaagttcatc
     1021 tttcaaaaat cgtataaaat caaggttttc aacgtctatt gacgtgtagt gaatccctat
     1081 ttcacctcag taaagattaa gcattgtcta ttttagctgt tagaaacgtt tatatatcaa
     1141 cgtttttgta atgttcctta gcaaaaggta gagtgaatgg tagagtagtt attgcgttag
     1201 ttcagcaatc ttatcaagat aaatacccac agcttctaac attcgttgag gtgctaattc
     1261 agcgtaagta tccattgtgg ttgaaattga tttatgtccc attctgactt ggagttcttt
     1321 ccagtttgca ccagcattaa gcaacattga agcatgagtg tgtcggaata aatggaaacc
     1381 ataatctggt aatcctagac ctgctaatct attcttgaga gttgttcgct cgtttctatc
     1441 acacatatag tttccgtata ttgttgggaa aatcaatttt gtttcaggtc tattgtgtaa
     1501 tttaagatat tcgttcattt cattgtgaaa atctcgaagt tcttcaagta tagataaagg
     1561 aactggaata gagcgattgc ctgcatcggt ttttggagtt gctttacaga tgactttccc
     1621 ttttgttcca gtctttttgt tagcggtttt ccaaagtaat gttttgttga caccaataga
     1681 ggattcttca aagttcaaat catcaattgt caatgccaat aactcattta tacgcaaggc
     1741 tgaagctaag agtgtgttac aaatcaactt aaaccgtcga ttggctctac tgttatctaa
     1801 actttcaaga taattgagcc acctagcgag actatcatca tgtaaaacca tgatacgttg
     1861 cttgctagac ttgggcttgg gcggaatctt gatagtattg acaggattag aggtcagacc
     1921 atagttagta atgccatagt caaaaatatc tttcaactta tgaataacag caccgaaatc
     1981 ttttgcacat cctttatttg cacgcttcac accagattca actgattttt ttgatttctt
     2041 tgctaggtca tttaaccata gctgaatatc ggcagattca attttatctg gtttgtaatc
     2101 tccgaattta ggaataatat aattatctag gtagcccctt accctattta atgtattgtg
     2161 tgaactaacc caagtttgat aagcttgaaa ccaagcttcg gctaaatctt ccagcgtatt
     2221 aataggcaca ttctcttttc gagtaaatcc atttctttca aattctaagc gagcttgaat
     2281 aacttctcta tcaagttgct taagtgtttt tgcagtaata gttgttgtga cttgtttgcc
     2341 agttttaaca tctttaccaa gaaatgctcc ttttagcgta tatgaaatgg atttatcttt
     2401 tttgattttt ttaatgactt ttttgccatt atggataatt gtttcagttt ccatatttgc
     2461 ctttcttcag gatattgaag caggctaaaa tagttaccac tctttctttt agataatact
     2521 attttagcac aaaacttcaa cattaggagt tcaagaagtc aataacatcg tctaataaat
     2581 agaagacggt tcgagttccc tctataggag gttctaatct ttttaatcct ttttgttccc
     2641 aagtttttag tgtgtttgga gagatattta gttgtcttag caattctcgt tgctgaatta
     2701 tctttagtgg tctgctctgt tctttgattt gaatgagctt gataagtgtt tgcaataact
     2761 gttcaatttg ttctaacttt tcgttattca tcgttgtctt tctcctctgt attggcagtc
     2821 tgtaaccgat ttggattatg ccgtcgtgaa tctaaatact tagcaaagaa ataggtacgt
     2881 tcaatgatga gtcctaacaa atttgtattg tttgctcgtg cataccaaac taactcttca
     2941 aattcggtaa agtcgttttc ttcgataata tcaaccactt catgaataaa atctgaggtt
     3001 ttcacttcca ttaagaattt atccaaatca aagccacaac caacttcaat atcttcgata
     3061 ttataggggg tcttctctgg attctcagca tgtgtaaaat agtcaaataa acctgttgga
     3121 gacataacaa cctcgacatg tgctggaccg tttagtttat cgctgatgat atttgatact
     3181 tgggaataac tttttagtga atcaaagaag aatgcaccgt gtttgtgtga ttttttgaac
     3241 tctcctgttt gtctgttcac atctttgttg tgccaagggc taaggataaa tggaatatgg
     3301 agttcttcca agatgtttaa ataatcctct ggcgcactct cttcgtagaa taagaaagtc
     3361 cactttgagg agcgttgttc ttttgccata ggcaattacc tcgctttgct atatcttttc
     3421 tatatatagg agattttggg tatacttttc ggaatttttt ggacaaaatt tgtgattatt
     3481 gattattgag ctattggggg tcgtagtaac cccaatagct catggttgaa tagaacataa
     3541 taaaaaaagg ggggctgttt ggctcttgct aatgcaagcc acagccccca aagattaacg
     3601 ttttttacca atgaaccata attgattgcg gactcgaata ggagatgaga aatagtaatc
     3661 agtatgctga ctagcaattt cctcttttaa tagtgcttcc atatccttta gaattttttg
     3721 tccctgttgg tctcttggaa ctttgatgaa gatagtgaca gaatcagtct gaatatcaac
     3781 catacattta cggacagctc gattaaatcc gttgtttaca gggattgatg ttggtacagt
     3841 ctgatgttca ggacttgtta ctttctgtac tttttcacgt tgaaataaga aatttctaag
     3901 agaaaaagta tgataaacag atttcacata gttcacaagt ctgtctgttt tccaccgttt
     3961 gacaatttct attccaatca ataccaaaga taaggacaag caaataagag ctagtccgta
     4021 actaatagaa ctgattttat cagtaatagt tgtgacagtc tccaacttga acagagtatt
     4081 ggtatttaat tgaatagata gactattgaa aagccaacca aacaaataca agataggagc
     4141 gatgagaagc agattcagaa tgaaattgaa acttctcatg aaataggttt tagttgtcat
     4201 aggatacctc gtttagtgta gtaagttggg cagagcagag gcagaacctg ataagggtgt
     4261 tcattatcaa taacttgaat gatacctgta ccatgtccag ttggaataac aatcccttca
     4321 gggtctaagt caggaaataa aaattgggtg gttttctgat tgatatttcc aatttgcaat
     4381 aatacgttaa gttgttccct tactgatatg ggaatggtat tgtggtcaaa acgttggcta
     4441 actaagaaga gatggatttt agttgctctc cctaacaagg caatttgtga gagcaaggag
     4501 aaaaaggctt ctttgatgtt cttattgact ccctctgata gagcaagcac ttcatcaatg
     4561 acaatggtta gatggggaaa ttgatggtta ggattatcat acaagatagc ttgccttttc
     4621 tgaatgagag ttgcacactg acttagttgt tcattaacct gtgaaacaaa atcggatttt
     4681 gaacgatttt cgacagggtg gataaccgca atgtgatttt ctctagccca tcggcttggg
     4741 gtgtcgaatt tagggtcaat aattatcaag tcagacatat gctttaggac acttaagaag
     4801 taagtaagag caaaagattt tcccgaaccc gaatttccag ctatagccca gtgattgacc
     4861 ttatctaaat taagttcaaa gtttttcatg attgggattt ttccctgcgg taaattggct
     4921 gaaaacttat ctaaatcagg aattacaaga cgctctgaaa ctcccttttt ccatggaaaa
     4981 aatagaccac gttgcacatg tatatcatct gtctttaacg gtacaaagta agttgcattt
     5041 tgttttagca acgtgaactg aggatatagg gaagcattag ctatcagaaa aattttattg
     5101 tagaggtcat catctaagat gtaagcacat ggtagtcgag ggacaaatat gaagccgttt
     5161 tctttaataa tgatgttaaa cgagttagtg tagctagttt ctccctgcat taaagccccc
     5221 agagccatat tgaggctctg gagcaagtaa gattgcagga aagattgatt cagcacatca
     5281 tgagattgtg aagtcatcat cgaacctcct tgataccgtc agctttgaag taaatattgt
     5341 attttatttc gcatgcttgc aatgtgtcaa actgaatcat agactggaaa gcaggaagtt
     5401 taatcttttc ttcgaatttg acttgaaatg ggtcttgtcc ttcttggaca aaccaacttt
     5461 tataagctat gatttctcct gttggtttcc catcttcaaa ccgttgttgt ggttcaagtt
     5521 cggtactaag agagaaaatt ggtagatttt gactgatgat tttatcagct aatgtagttg
     5581 tataaccacc ttttgtggtt ttcattttga atgccatcgg cagttcctcc tgtgtaatag
     5641 aaaataatgt gaatgagacg tgctcggttt ttatcatgag ctggatactg tatctaggtc
     5701 atacccatca cctcctatat ataggagatt cagaatatgg ttttcggaat tttttaaaaa
     5761 aactagtagt cttttgttga
//
LOCUS       DASGAC010000135         5688 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.136, whole genome shotgun sequence.
ACCESSION   DASGAC010000135 DASGAC010000000
VERSION     DASGAC010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5688)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5688)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5688
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.136"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(591..2414)
                     /gene="dnaK"
                     /locus_tag="U1335_001722"
     CDS             complement(591..2414)
                     /gene="dnaK"
                     /locus_tag="U1335_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002946936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEM5232179.1"
                     /translation="MSKIIGIDLGTTNSAVAVLEGTESKIIANPEGNRTTPSVVSFKN
                     GEIIVGDAAKRQAVTNPDTIISIKSKMGTSEKVSANGKEYTPQEISAMILQYLKGYAE
                     EYLGEKVTKAVITVPAYFNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTDK
                     DEKILVFDLGGGTFDVSILELGDGVFDVLATAGDNKLGGDDFDQKIIDHMVAEFKKEN
                     GIDLSADKMALQRLKDAAEKAKKDLSGVTSTQISLPFITAGAAGPLHLEMTLTRAKFD
                     ELTYDLVERTKVPVRQALSDAGLSLSEIDEVILVGGSTRIPAVVEAVKAETGKEPNKS
                     VNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSK
                     SQVFSTAADNQPAVDIHVLQGERPMAADNKTLGRFQLTDIPAAPRGIPQIEVTFDIDK
                     NGIVSVKAKDLGTQKEQTIVIQSNSGLTDEEIDRMMKDAEANAEADKKRKEEVDLRND
                     VDQAIFATEKTLKETEGKGFDAERDQAQAALDELKAAQEANNLDDMKAKLENLNEKAQ
                     ALAVKLYEQAAAAQQAAAGQEGAQTADNAGDDVVDGEFTEK"
     gene            complement(2641..3153)
                     /gene="grpE"
                     /locus_tag="U1335_001723"
     CDS             complement(2641..3153)
                     /gene="grpE"
                     /locus_tag="U1335_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEM5232180.1"
                     /translation="MSEEIKNEEIVEEVEATEEVVETPEKSELDLANERAEEFENKYL
                     RAHAEMQNIQRRANEERQTIQRYRSQDLAKKILPSLDNLERALQVEGLTDDVKKGLEM
                     VQESLIQALKEEGVEEVTTDVFDPNLHMAIQTVPATDDCPAEHIAQVFQKGYKLHERL
                     LRPAMVVVSE"
     gene            complement(3166..4200)
                     /gene="hrcA"
                     /locus_tag="U1335_001724"
     CDS             complement(3166..4200)
                     /gene="hrcA"
                     /locus_tag="U1335_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HEM5232181.1"
                     /translation="MITQRQNDILNLIVELFTRHHEPVGSKALQEMIASSSATIRNDM
                     AKLEQLGLLEKAHTSSGRMPSRAGFQYFVNHSLNLEHIDEEDVYQVVKAFDFEAFKLE
                     DILERASTVLADLTGYTSVILDVEPTSQQLTSFDIVQLSSHDALAVLTLDQSKPVTVQ
                     FAIPKNFLTRDLEVLKRLVDERFVGQTVLAIHYKLRTEIPQVVQRYFTTTDNVLDLMD
                     YIFSNLFQESVFISGKVASLTYGNLATYQLLDSPQLLAPELRQGLAPDQQTSISVAEH
                     RDPALADVTVIHHRFPIPYRGMAQMSLLGPVDMNYRRQMSLINIICRVLFMKLTDYYR
                     YLSSNHYEVN"
     gene            complement(4365..4868)
                     /locus_tag="U1335_001725"
     CDS             complement(4365..4868)
                     /locus_tag="U1335_001725"
                     /inference="COORDINATES: protein motif:HMM:NF022641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2812 domain-containing protein"
                     /protein_id="HEM5232182.1"
                     /translation="METKTECKVFFITDFNQQAQYLTEMHRKGWRLTKIRWSFFYHFE
                     KCQPEEVVYQVDFKESKNKDRDSYLRMYEDYGWEFVTSCRSFVIFRKAAVKGDLEIYG
                     DRESKLVFVKTIIQRRYLLSLGLYFMLIGMNLNEHNYVFTLVLSAIYIPLVLLIGYRF
                     YRLVKNN"
     gene            complement(4858..5181)
                     /locus_tag="U1335_001726"
     CDS             complement(4858..5181)
                     /locus_tag="U1335_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM5232183.1"
                     /translation="MNDKLKRVYVPMTETAFYILFHLQEERHGYDITQKTKEVTAGQV
                     VISPGTMYGTLSKMEKDGLIAFVREEDKRKFYQITETGREILDIELARIERLYRNSKG
                     ESYGD"
     gene            complement(5281..5544)
                     /locus_tag="U1335_001727"
     CDS             complement(5281..5544)
                     /locus_tag="U1335_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232184.1"
                     /translation="MMKKLLVLGALAMLGFVTFGLLTTNSSSASAETEGKVVLFGKVD
                     FSDDEEQDTDEGREEVATESDDASWLENFITTHKTPFSKTIKK"
BASE COUNT         1475 a         1292 c         1164 g         1757 t
ORIGIN      
        1 caccaaaata gtcatgcatg aatactacat ataaacgact gtgttcgaat aaacgaactt
       61 gtattccttt ctttgaaaat tagaaagtag cccgtgttca attaagaaca ctttcctttc
      121 tatgaagata ttaagccgtt aagcgactca aagaaaaata ggaaactgtc cgacgatgcc
      181 ttgcatctag gtaaagttta tcttttttca aagagtcgta ggcgtattca attctgtaaa
      241 agttagaagg gtatttaccc aaaaacagag gctgggttgc aacctctgtg attggaatct
      301 tgatttacta atgatttcta ttctcggaaa gatgagaact gagttcgagc taagaacctt
      361 aaccgacttc ctactaattt tcaagaagtc aggataaaaa ggtctcccag tccaaccgct
      421 cgtttctgaa ttctggctca cgggataaaa acgttccctg aaccatttac gacgtgagaa
      481 aacaaagtcg ataatacttt gttttcgagc tagtaagaca cctaggttag ccgtaatagc
      541 ggtaaccgtt aactgatgag ctacttttag tagccatcag ttttggtgtg ttacttctcc
      601 gtaaactcgc catccactac atcatcgcct gcgttgtcag ctgtttgggc accttcttgg
      661 cctgctgcgg cttgttgtgc tgctgcagct tgctcgtaga gtttcaccgc aagggcttgg
      721 gctttttcgt tgaggttttc aagtttagcc ttcatgtcgt ccaagttgtt agcttcttga
      781 gctgctttca actcatcaag agctgcttgg gcttggtcgc gttctgcatc gaaacctttg
      841 ccttccgttt ctttaagcgt tttctcagtc gcaaatattg cttggtcaac atcgttacga
      901 aggtccactt cttccttacg tttcttatct gcttcagcgt ttgcttctgc atctttcatc
      961 atgcggtcga tttcttcgtc tgtcaaacct gagtttgatt ggataacgat agtttgctct
     1021 ttttgcgtac caaggtcttt ggcttttaca gaaacgatac cgttcttatc gatgtcgaat
     1081 gttacttcta tttgtggaat accacgaggt gctgcaggaa tgtcggtcaa ttggaaacga
     1141 ccaagagtct tgttatccgc tgccattgga cgctcacctt gaagcacgtg gatgtcaaca
     1201 gctggctggt tgtccgccgc agttgagaag acttgtgatt tagaagttgg gattgttgtg
     1261 ttacggtcaa tgagttttgt aaatacacca cccattgttt cgataccaag tgacaatgga
     1321 gttacgtcaa gaagaacaac gtctttgaca tcaccagtga tgacaccacc ttggattgct
     1381 gcacccatag caacaacttc atcagggttt acagatttgt ttggctcttt accagtttca
     1441 gccttaacag cttctacaac ggctgggata cgagttgaac cgccgacaag gataacttcg
     1501 tcgatttctg ataagctgag tcctgcatct gacagagctt gacgaacagg aacttttgta
     1561 cgttctacaa ggtcgtaagt caattcatca aatttagcac gagtcaatgt catttccaag
     1621 tgaagcggac ctgctgcacc tgcagtgatg aacggcaagc tgatttgagt tgacgtcaca
     1681 cctgacaaat ctttcttagc tttttcagct gcatctttca aacgttgcag tgccatcttg
     1741 tcagctgaca agtcgatgcc attttctttc ttgaattctg ctaccatgtg gtcgataatc
     1801 ttttggtcaa agtcgtcacc accgagcttg ttgtcacctg ctgttgcaag tacgtcaaag
     1861 acaccgtcac cgagctcaag gatagatacg tcgaaagtac ctccaccaag gtcgaatacc
     1921 aagattttct cgtctttgtc agtcttgtcc aaaccgtaag caagggctgc tgcagttggc
     1981 tcgttgacga tacgttctac ttcaagacca gcgattttac cagcgtcttt ggttgcttga
     2041 cgttgggcat cgttgaagta agcaggaaca gtgataaccg ctttggttac tttttcacca
     2101 aggtactctt cagcgtagcc tttcaagtat tgaaggatca ttgctgagat ttcttgtggt
     2161 gtgtattctt tgccatttgc tgaaactttt tcagaagttc ccatttttga tttgatagag
     2221 atgatggtat ctgggttagt cactgcttgg cgttttgccg cgtcaccaac gatgatttca
     2281 ccatttttga aagatacaac agacggagtt gtgcggttcc cttctgggtt tgcgataatt
     2341 tttgattcag ttccttcaag aactgcaact gctgagtttg ttgtacctaa gtcaataccg
     2401 ataattttag acatgtgtgt tacctcttat tttagttttc ttttattcat tcatagttta
     2461 ccgtcattgc agacgaggtt ttttcatagt tttcgagtaa ctcttgtcgc tttagcgacc
     2521 ttagagttac cgacacaaag tttgcctaag agctaggagc ctcgcgacga agcgattggt
     2581 tgcaaactac tgtgcacgac atctcggtca ggttttcttt tttgggaaat agcagagcga
     2641 ctactctgat acgactacca tagccggtct cagcaagcgt tcatgcagct tgtagccttt
     2701 ttggaagact tgtgcaatgt gttctgctgg gcagtcgtct gtggctggga ctgtttgaat
     2761 ggccatgtga agatttgggt caaagacatc tgttgtgact tcctctaccc cttcttcttt
     2821 gagggcttga atcaagcttt cctgtaccat ttccaagcct tttttgacat catctgtcaa
     2881 gccttcaact tgaagggcac gctccaagtt atccaagctt ggcaagattt tcttggccaa
     2941 gtcttgcgaa cggtaacgct gaatggtttg gcgttcctcg ttggcacggc gttggatatt
     3001 ttgcatttca gcgtgggcac gaaggtactt gttttcaaat tcctcagcgc gctcgtttgc
     3061 caaatccaat tctgattttt caggtgtttc cacaacttct tctgttgctt caacctcttc
     3121 tacgatttct tcgtttttaa tttcttctga caaagcattc tccttctaat tgacttcgta
     3181 atgattacta cttagataac ggtagtaatc ggttaatttc ataaatagga cgcgacagat
     3241 gatgttaatc aaactcatct gcctgcggta gttcatgtca acaggaccaa gcaaactcat
     3301 ctgggccatg ccccgatagg ggattggaaa gcgatgatga ataaccgtca catccgctag
     3361 ggctggatca cgatgttccg ccacggaaat gctggtctgc tggtctggag ccaagccctg
     3421 ccgcaactct ggggctaata gctgtgggct atccaagagc tgataagtag ctagattgcc
     3481 ataggtcagc gaggcaactt ttccactaat aaagaccgat tcttggaaga gattggaaaa
     3541 gatgtaatcc atgagatcca agacattgtc cgtcgtggtg aagtaacgtt gcaccacttg
     3601 gggaatctcc gtccgcaact tgtagtggat tgccaagacc gtctggccaa cgaagcgttc
     3661 atccaccaag cgtttgagca cttccaagtc cctagtcaaa aagttcttgg gaatggcaaa
     3721 ctggacggtg actggtttgg actggtccaa agtcaagact gccaaagcat cgtggctact
     3781 gagttgcacg atgtcaaagg aagtcaactg ctgactggtc ggctccacat ctaagatgac
     3841 cgaagtgtag cctgtcaaat ccgctaggac tgtactagcc cgctccaaga tgtcctctag
     3901 cttaaaggct tcaaagtcga aggccttgac cacctgataa acatcttctt catcgatatg
     3961 ttccagatta agcgagtggt tgacaaagta ttgaaaacca gcccgactgg gcatccgtcc
     4021 gcttgatgtg tgagcctttt ctaacaagcc caactgctcc agcttagcca tgtcattgcg
     4081 aatagtagca gagctggaag caatcatctc ctgcaaggcc ttagaaccaa ctggctcatg
     4141 atgacgcgta aacaattcaa caatcagatt caaaatatca ttttgacgtt gggtaatcat
     4201 ctccgctcct ttcatgaaca cgattgattt ttaacgttag cactctatga tgtcgagtgc
     4261 taacctatat actcccatta tacgccgaaa aaatggattg tcaagagaaa aagataaaaa
     4321 attagcactc ttttgcttag agtgctaaaa atcagtctga ggacctagtt attttttaca
     4381 agtcgataaa aacggtatcc aatcaacagc acgagaggga tatagattgc ggaaagaaca
     4441 agcgtaaata cataattatg ctcattcaga ttcatcccta tcaacatgaa ataaagtcct
     4501 aaggatagta gatagcgtct ttggatgatt gttttaacaa ataccagctt gctttcccta
     4561 tcaccgtata tctcaagatc tccctttaca gctgccttcc taaaaataac gaagcttcgg
     4621 catgatgtga caaactccca tccgtaatcc tcgtacatac gcaaatagga gtctcggtct
     4681 ttattttttg attccttaaa atcaacctga tacacaacct cttctggctg gcatttttca
     4741 aaatgataaa agaagctcca acgaatttta gttagcctcc accctttccg atgcatttca
     4801 gtcagatact gcgcctgctg attgaaatcc gtgataaaaa atactttaca ctctgtctta
     4861 gtctccataa ctttccccct tactatttcg atagagccgt tcaattcgag ccaattctat
     4921 gtctaaaatt tctcgacctg tttctgttat ttggtaaaac tttcgcttgt cttcttctct
     4981 gacaaaggca atcaagccat ctttctccat tttcgacagg gtgccgtaca tggtcccagg
     5041 gctaatcacg acctgacctg ccgtgacttc cttggtcttc tgggtaatat catagccatg
     5101 ccgttcttcc tgtaaatgaa agagaatata gaaggctgtc tctgtcatgg gaacatagac
     5161 gcgttttaac ttatcgttca taaaactcct ttcgcactac gatacatcga acttcgatgt
     5221 atttattgta tcgcagctcg atacacttgt caagaaaaaa atcagagaat atccctgatt
     5281 tcatttcttg attgttttag aaaatggtgt tttatgtgtc gtgataaagt tttcaagcca
     5341 gctagcatca tcgctctccg tcgctacttc ttcccttccc tcatccgtgt cctgttcttc
     5401 atcgtctgaa aaatcgactt ttccaaacag aactaccttg ccctccgttt cagcacttgc
     5461 tgaactacta ttagttgtta gaagcccaaa agttacaaaa cctagcattg caagagcacc
     5521 taaaacaagt aatttcttca tcattatttc ctccaaatta attaagaacc tgtattcaca
     5581 gttcagcact tctaactaag gctagttttt cagctactca ccgttcgttt tttcaaaata
     5641 cagttagcat tccctcaaaa aactgccttg attagcgaaa aaaatctc
//
LOCUS       DASGAC010000136         5526 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.137, whole genome shotgun sequence.
ACCESSION   DASGAC010000136 DASGAC010000000
VERSION     DASGAC010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5526)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5526)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5526
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.137"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            5..880
                     /locus_tag="U1335_001728"
     CDS             5..880
                     /locus_tag="U1335_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018165534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEM5232185.1"
                     /translation="MILLTIQVFIVALILWMLYTILSYAKKHDISLKEKFWTGFGIGY
                     VTDLLDTLGIGTFATTTTMFKLTKLVEDDRKIPATMTTAHIIPVLVEALLFITIVEVD
                     MVTLIAMAAAAFTGAFVGAKVTQKWDTKKVQRILGILLIIAACFMVYRMITNPGADLT
                     NEVKGLTGWKLAVGIAFDFMVGMLMSMGLGNYAPELIFFSLMGISPAVALPVMMLNAA
                     MIMTAGAKQFIQSGRVNWPGVPGIIVGGVLGVLTAAFFLSNLDINNLKILVVFVAAYT
                     GFTLLRSSFVTRIKK"
     gene            892..1278
                     /locus_tag="U1335_001729"
     CDS             892..1278
                     /locus_tag="U1335_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1934 domain-containing protein"
                     /protein_id="HEM5232186.1"
                     /translation="MDIHLRNEIDLDGQIEVVDQQFQVEIKEKDGNLYLIYSNDEAEK
                     VVIKCDEEELVMTRFSTPKSIMRFISGKEAIVTIPTPLGIQHFVTDTKRYQLNRSDQS
                     VQLQYELKGLENQQLFASYNLEISWK"
     gene            1754..4438
                     /locus_tag="U1335_001730"
     CDS             1754..4438
                     /locus_tag="U1335_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010922034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HEM5232187.1"
                     /translation="MSKEQKRDLFYTQSEEQVLSSMGSSLDGLSSDVASKRLADYGRN
                     ELDEGEKRTLLAKFLDQFKDLMIIILIAAAILTVITEGSHGLTDAIIILAVVVLNAAF
                     GVYQEGQAEAAIEALKNMSSPVARALRDNHVVEVDSKDLVPGDIVLLEAGDVVPADMR
                     LLEANSLKIEEAALTGESVPVDKDLSAVLAEDAPIGDRVNMAYQNSNVTYGRGLGVVT
                     NTGMYTEVGHIAGMLANADETDTPLKQNLNQLSKVLTYAVLVIAAVTMAVSVFVRGEG
                     ILPALMTSVALAVAAIPEGLPAIVTVVLSLGTQVLAKRNSIIRKLPAVETLGSTEIIA
                     SDKTGTLTMNQMTVEKVYTNGQLIDAKEVLDASNTTLRVMNFANDTKVDPTGKLIGDP
                     TETALVQFGLDQNFDVREVLVSEPRVAELPFDSTRKLMSTVHQQAAGNYFVAVKGAPD
                     QLLKRVTQIEENGTIRPITDADKQAILATNKELAKQALRVLMMAYKYVDAIPELESDI
                     VENDLIFSGLVGMIDPERPEAAEAVRVAKEAGIRPIMITGDHQDTAEAIAKRLGIIDP
                     NDTEDHVFTGAELNELTDEEFQKVFKQYSVYARVSPEHKVRIVKAWQNDGKVVAMTGD
                     GVNDAPSLKTADIGIGMGITGTEVSKGASDMVLADDNFATIIVAVEEGRKVFSNIQKT
                     IQYLLSANTAEVLCIFLATLFGWDVLEPVHLLWINLVTDTLPAIALGVEPAEPGIMTH
                     KPRGRNSSFFSGGVLSSIIYQGILQTALVLGVYGFALLYPEHSIYEEIHADALTMAYV
                     TLGLIQLVHAYNVKSVYQSVFTVGLFKNKLFNWSIPFAFLLLMATIVVPGFSNFFHVS
                     VLSPTQWLVTIIGSGLMVVVVEIVKFVQRKMGLDEKAI"
     gene            complement(4554..4943)
                     /locus_tag="U1335_001731"
     CDS             complement(4554..4943)
                     /locus_tag="U1335_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232188.1"
                     /translation="MRVIIHYPKPIKQLSSQRLPLLVDGKIAGTVTQGKILSLPITQP
                     SVTLSIRGDKKSSIQVKDGDRVQIVENSKYFTLYYFSLAIIPIALLFNLPTLVKTILL
                     ILALAITLLGQAIFPKYIISTEKSSDH"
     gene            5077..5493
                     /locus_tag="U1335_001732"
     CDS             5077..5493
                     /locus_tag="U1335_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="HEM5232189.1"
                     /translation="MNYLQNYILSKSSYLPSDKLFILQKELEDLDDEALNVLMMVEMR
                     QPLVALILAIFFGEFGVDRFYVGNKELGFAKLIAFAVSFVTLFILIGFLLFLGLYLWK
                     FIDCFLIMRACKEANFERLMLQIHQYKAFQHSNQTF"
BASE COUNT         1540 a          994 c         1246 g         1746 t
ORIGIN      
        1 tcaaattatc ttattaacta ttcaggtctt tattgtagcc ctgattcttt ggatgcttta
       61 cacaattcta tcctatgcta aaaagcacga tatttctcta aaagagaaat tttggacagg
      121 gtttggtatc ggttatgtta ctgatttgct agacaccttg gggattggaa cctttgcaac
      181 gacaaccact atgtttaaac tgacaaagtt ggtggaagac gatcgtaaaa ttcctgcgac
      241 catgacaacg gcgcacatca taccagtctt agtagaggcg ctattgttta ttacgatagt
      301 tgaggttgat atggtcactc tgattgctat ggcagcagcg gcatttacgg gtgcctttgt
      361 tggtgccaag gtaactcaaa aatgggatac aaagaaagtt caacgaattc ttgggatttt
      421 actaattatt gcagcctgtt tcatggtcta tcgcatgatt actaaccctg gcgcagatct
      481 taccaatgaa gtaaagggct taactggttg gaaactggct gttggtatcg cctttgattt
      541 tatggtggga atgctgatga gtatgggact gggtaactat gctcctgagt taattttctt
      601 ctcattgatg ggaattagtc cagcggttgc tcttccagtt atgatgttga atgctgctat
      661 gattatgaca gctggtgcca agcagtttat ccaatcagga cgagtaaact ggccaggagt
      721 tccaggaatc attgtcggtg gggtgctagg tgttttgaca gccgctttct tcctatcaaa
      781 tttggatatt aataatttga aaattttagt tgtcttcgtt gcagcgtata caggctttac
      841 tctgcttcgt tcatcctttg ttactaggat taaaaaatag taggaggaac tatggatatt
      901 catttacgaa atgaaattga tctggacggg cagattgagg tagtggatca gcaatttcaa
      961 gtggaaatta aggaaaaaga tgggaatctt tatctcattt atagtaacga tgaagctgaa
     1021 aaagttgtca taaaatgtga cgaagaagag ttagtgatga cacgtttttc cactccaaag
     1081 tctattatgc gattcatttc tggtaaagaa gctattgtga ccattcctac accgttagga
     1141 atccagcatt ttgtgaccga tacaaaacgt taccaattaa accgttcgga tcaaagtgtc
     1201 cagttgcaat atgaattaaa gggattggag aaccagcagc tttttgcttc ctataatttg
     1261 gaaatctcgt ggaaataatc tcttatttcc agaaaaatat tcttgaattt ctcgggattt
     1321 ttgatataat agttaacaaa tcgagggagt agctagcgga aaattccgtg atattgtcgt
     1381 caatccgact tgtttccggc aatatattaa atagcgagac ttgttttaga acctgtcttc
     1441 gcaagtaagg tatttttaga taagagatag ttttgtgtct atcaaggcag ttttttgaag
     1501 gaatactgac tgtatttcaa aaaaaactaa tactcaatga aaatcaaagt caggctaggc
     1561 gacgccgatg cagattgaac taaagttcat caattcaagt caacaacgcc tgagtttgat
     1621 tttcgaagag tataaagatg agtgacagaa aactagcctt agatagaagt gccgagctgt
     1681 gaagagaggt tctcattaaa caggtctctt ttttatttgt taggtaaaaa agagaccgag
     1741 aaggagaagg aaattgtcaa aagaacaaaa acgcgatttg ttttatacac agagcgaaga
     1801 gcaagtattg tcaagcatgg ggtcttcttt ggacggtttg tctagtgatg tggcaagcaa
     1861 acgtctagca gactacggtc gtaacgaatt ggatgagggt gaaaaacgca cactcttagc
     1921 taaattcttg gatcagttca aagacttgat gattattatt ttgattgcag cagcaatctt
     1981 gacggtgatt acagaaggtt cacacggttt gacagatgcc attatcatct tggccgtagt
     2041 tgtcttgaat gctgcctttg gtgtttatca agagggtcaa gctgaggcag ccattgaggc
     2101 gctaaaaaac atgtcaagcc cagttgcgcg tgcgcttcgt gacaatcatg tagtcgaagt
     2161 tgattctaaa gacttggtac caggtgacat cgtcttgctt gaagcaggtg atgttgtccc
     2221 tgccgatatg cgtttgttgg aagctaactc cctcaaaatc gaagaagcag ctcttacagg
     2281 tgagtctgta ccagttgata aagatttgtc agcagttttg gctgaagatg caccgatcgg
     2341 tgaccgtgtc aacatggcct accaaaactc aaacgttact tacggacgtg gtcttggtgt
     2401 ggttacaaac acaggtatgt acacagaggt tggtcatatc gcaggtatgc ttgccaatgc
     2461 tgatgaaacc gatactccct tgaagcaaaa cctcaaccaa ttgtctaagg tcttgactta
     2521 tgcagttctt gtaattgctg cggtaacgat ggctgtttca gtcttcgtac gtggagaagg
     2581 tattttgcct gctcttatga cttctgtagc tcttgcggtt gctgccattc cagaaggttt
     2641 gccagctatt gtaacggttg tcctttcact tggtactcaa gtattggcta agcgtaattc
     2701 tatcatccgt aagttgcctg ctgttgaaac acttggttca acagaaatca tcgcttcaga
     2761 taagactggt actttgacta tgaaccagat gactgttgag aaagtttata caaatggtca
     2821 gttgattgat gcgaaggaag tcttggatgc aagcaacaca acgcttcgtg ttatgaactt
     2881 tgccaatgat acaaaagttg acccaactgg taaattgatc ggtgacccaa cggaaacggc
     2941 gcttgttcaa tttggtttgg accaaaactt tgacgttcgt gaagtcttgg tttctgagcc
     3001 tcgtgtagct gaattgccat ttgactcaac acgtaaatta atgtcaactg ttcaccaaca
     3061 agctgcaggc aactactttg tagctgttaa gggtgcacca gaccaattgc tcaaacgtgt
     3121 aacgcaaatt gaagaaaatg ggacaattcg tccgattacc gatgcggata agcaagctat
     3181 ccttgcaacc aacaaagagt tggctaaaca agccctccgt gtcttgatga tggcatacaa
     3241 gtatgttgat gctattcctg aattggaatc tgacatcgtt gaaaacgacc ttatcttctc
     3301 aggtttggtt ggtatgattg accctgagcg tcctgaagca gcagaagctg ttcgtgttgc
     3361 taaggaagct ggtatccgtc caatcatgat tacgggtgac caccaagata cagctgaggc
     3421 gattgccaag cgtcttggta tcattgatcc gaatgacaca gaagaccatg tatttacagg
     3481 tgcagagctc aacgaattga cggatgaaga gttccagaaa gtcttcaaac aatattctgt
     3541 atacgctcgt gtatctccag aacataaggt tcgtatcgtt aaggcttggc aaaatgatgg
     3601 taaggttgtt gccatgactg gtgacggtgt taacgatgcg ccatcactta agacagccga
     3661 catcggtatc ggtatgggta tcacaggtac ggaagtttcg aaaggtgcct ctgatatggt
     3721 ccttgcagat gacaactttg cgactattat cgttgcggtg gaagaaggac gtaaggtctt
     3781 ctcaaacatc caaaaaacca tccagtatct cttgtcagct aacactgctg aggtattgtg
     3841 tatcttcctt gcaaccctct tcggttggga cgtgttggag ccagttcatc ttctttggat
     3901 caacttggta acagacactc ttccagctat cgctcttggt gttgagcctg ctgaaccagg
     3961 tattatgaca cacaaacctc gtggacgcaa ttcaagcttc ttctcaggtg gtgtcctaag
     4021 ctctatcatc tatcaaggta ttctacagac cgctttggta ttgggtgtct atggatttgc
     4081 cctgctttac ccagaacaca gcatttatga agaaatccat gcagatgctt tgacaatggc
     4141 ttacgtgaca ttaggtttga tccaactggt tcatgcatac aatgttaagt ccgtttatca
     4201 gtccgttttc acagttggtt tgttcaaaaa taaactcttc aactggtcaa ttccatttgc
     4261 tttccttttg ttaatggcga caatcgttgt tccaggattt agcaatttct tccatgtatc
     4321 cgttctctct ccaacccagt ggttggtaac cattattggt tcaggcctca tggttgtcgt
     4381 tgtagaaatt gttaaatttg ttcaacgtaa aatgggattg gatgaaaaag ctatctaata
     4441 tagttattca gcttatcttt tattacttcg ttaactcgcc ttgccgtact tcagtacagc
     4501 ctacgcctcg ttaccttgta ctaaaagcaa atatcatttg aaaaagctca gatttagtgg
     4561 tctgagcttt tttctgtact gataatgtat tttgggaaga ttgcttgtcc caataaagta
     4621 atggctagtg ctagtatgag gaggatggtt ttgacaagag ttggtaagtt aaacagtaag
     4681 gcgattggta tgatagccaa gctgaaatag tagagagtga agtatttgct gttttccact
     4741 atttgaactc tatcgccgtc tttaacttga atgcttgatt ttttatcccc tcgaatgctt
     4801 agtgtaacag atggttgtgt aattggtaag cttagaattt taccttgagt aactgtccca
     4861 gcaatttttc catctaccag gagtggaagt ctttgggagg atagttgttt gataggtttt
     4921 ggataatgaa taataactct catatgaacc tccttgtaat ctagtttcat tatagcaaaa
     4981 aagaaaaaaa tgtaaacgat ttctgatgct gttttcccct acaggcttgc ttgaagaata
     5041 agaaactgct ataattttga agaggtagga gtttatatga attatcttca gaattatatt
     5101 ttaagtaaaa gcagttattt gccatctgat aagttattca ttctgcaaaa agaactagaa
     5161 gatttagatg atgaggcttt aaacgttctt atgatggttg agatgcgtca acctcttgtc
     5221 gcacttattt tggctatttt cttcggtgag tttggtgtcg accgttttta tgtcgggaat
     5281 aaagaattgg gatttgccaa gctgattgct tttgcagtat cttttgttac gctatttatc
     5341 ttgattgggt tcttgttatt tttgggactt tatttgtgga agtttattga ttgcttctta
     5401 atcatgcgag catgtaagga ggcgaacttt gagcgtttga tgctacaaat ccatcaatat
     5461 aaggcttttc agcatagcaa tcagacattt taataagata tttttgggaa taaggggagg
     5521 cttggt
//
LOCUS       DASGAC010000137         5506 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.138, whole genome shotgun sequence.
ACCESSION   DASGAC010000137 DASGAC010000000
VERSION     DASGAC010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5506
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.138"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            23..1240
                     /locus_tag="U1335_001733"
     CDS             23..1240
                     /locus_tag="U1335_001733"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232190.1"
                     /translation="MFQIEGKLFFRSKKTLFAILVMLIAILASSFLAGYHNRQAKLGV
                     IQNYEQYIQKFENIIQDLETQYQNQALSEEDYQAEKTFFTDYIANYQKEIEAVKKEDW
                     TYFYEKNIQNYQRDGQYISLVYQSYEFAPQTIENTFLISKYLLEKEIPSAFPTELYLT
                     AFENPQTPTDREIVKSLGQQALKGTSHEIWQGQKQLGLVITLPLFLLTFTNFFIKDQQ
                     GTSRQIRLLQTLGLTRIRITTNKYLAFLTLYTALFLTLYLSHLLIAFLLNGNSSWIYP
                     VTTYSSSGLAYSFITTTIKPIYQVILLACGMHYLYLLFLLGVAQTLARVLKNGLAGLV
                     VTLGLVISANFFPHILNPFSLWNAGNLADGSAIIYHQLTGYSIPKVFTVLLISNLLIY
                     CLQFYLLTRKSEV"
     gene            1243..2103
                     /locus_tag="U1335_001734"
     CDS             1243..2103
                     /locus_tag="U1335_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM5232191.1"
                     /translation="MRLSIHNLCKSYGKKNILDQLNLELVEPGIWALIGPNGAGKTTL
                     LDCIANLQSFDSGEISINGKKHDNTNVYQTFAYLQDNRVLYPELTGLEHLRLVQTIQD
                     LPKERIEEVIEEIGIRDYVKIPVKNYSLGMKQHLLLAIGIMNKPQVMLLDEPLNGLDP
                     TSYIQTRKLLQKLAKNGSTIIVSSHQLNEVDQLTDQLLFLKQGKIIEWKLEQVGRQYA
                     IQTSDNQTVYQKLGQVKGLTLANDSIQVDTSVHSLHFYLDQLMACQVEILDISVQEHQ
                     SEEIYKELFE"
     gene            2116..2997
                     /locus_tag="U1335_001735"
     CDS             2116..2997
                     /locus_tag="U1335_001735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232192.1"
                     /translation="MNLLLLFILRLKRNAIFLSLITAIALIPFAMSYRNVLEAENLRF
                     EDRTRIIQVKKEAEIVLYADDKEAQALDQESMDYYKKLLELTTTYLEKEHIQGKSQEV
                     LETELELYQTMQNWEANGHNINHFTNSELAERITVYKKVLEQNLTFHYPTAPKDVYLT
                     LLQVLPASNYMIPLVICCLLVWLLLTDLSKHRGLLFINGLSPGQYASSLTLLALLLQV
                     AIYALILFMLLLLAHQFQFTFQEDYPLLVGTNTLSTISIREQLQKLLLVMAGVTGFYL
                     TFIRLATAKVLQTYKRK"
     gene            complement(3120..3686)
                     /locus_tag="U1335_001736"
     CDS             complement(3120..3686)
                     /locus_tag="U1335_001736"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232193.1"
                     /translation="MKKIIPFFILIITFLGVAIYLSLESDKTDVEIAKSWTVTSKEIN
                     TIEIYGSEQPFELEIVETDQEVTTISLTGRISEAAMSTLEKADISENDAYIPLGKKGF
                     KLVTVASGKSSLKAKIALAKGATFKEVYVDTWNGTVDITLPRSYDGGFDVKLNSGAKL
                     LEVPEEGANKESILKIDAYADVSIRKGD"
     gene            complement(3706..4413)
                     /locus_tag="U1335_001737"
     CDS             complement(3706..4413)
                     /locus_tag="U1335_001737"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232194.1"
                     /translation="MFHKVKSDFYRIWKERTLIFPVSLVILLGVLFAYLMRETDGQGG
                     ITIILSSVAGFIPLFFSSACNLVWGEEFTNRTINHAIIKSSSRFSVYFYKLFEILSLC
                     FAYTLLLFFTVIVCRIFWNGQVDMGEAFDLLIKQLPFHLCFSQLCLFIFQYVDKIYQA
                     YLIYTMIVLMFDNLVSYVTTSLLANDVFSHFFLFNQVKLITNQTEFFTPSSLIALIFS
                     VVYLLSSYLLFSSREFK"
     gene            complement(4403..5302)
                     /locus_tag="U1335_001738"
     CDS             complement(4403..5302)
                     /locus_tag="U1335_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006702477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM5232195.1"
                     /translation="MANTLLNVTAVSKTYGKQKVLDNISFDINCGEICGLVGENGAGK
                     TTLIRILAGLISSNSGEISGLESQAVSCIVESPALYPHLSAGDNLRVQMIGLGIGADI
                     DKVKNLLRMVGLEGVDSKKKVKDFSLGMKQRLAIALAICDWPKLLILDEPINGLDPVG
                     IKEIREILLLLKNEYRMTILVSSHILSELDLVVDKYIIMSKGKVLQIIQKDALQNLLQ
                     TKRIVRVDKEHEALEVLLSEGIEAVVTDEGIELSEIGKSTSWIIDCLRKNDIQIEEII
                     KFQPSFESYYLSLITREEVPHVP"
BASE COUNT         1755 a         1251 c          926 g         1574 t
ORIGIN      
        1 ctcttctctt ttggaggtat ctatgtttca aattgaagga aagctatttt tccgtagcaa
       61 gaaaaccttg ttcgctatct tggtcatgct gattgcaatc ctagctagtt cctttctagc
      121 aggctaccat aatcggcaag ctaaattagg ggtcatccag aactatgaac aatacattca
      181 aaaatttgaa aatatcatac aagatttaga aacacaatat cagaatcaag ccctcagcga
      241 agaagattat caggctgaaa aaacattctt tacagactat atcgccaact accagaagga
      301 gattgaggcg gtcaagaagg aggactggac ctatttttat gagaaaaata tccagaacta
      361 ccagagggat ggacagtata tcagccttgt ctatcaaagt tatgaatttg ccccacaaac
      421 catcgaaaat accttcttga tttccaagta tctgctagaa aaggagatac cctctgcctt
      481 tccaactgag ctttacctaa cagcctttga gaatccccaa acaccaacag atagagaaat
      541 cgtcaagagc ctggggcagc aggccttaaa aggaaccagt catgaaatct ggcagggtca
      601 aaaacagcta ggcctggtca tcacccttcc tctctttctc ttaactttca ccaatttttt
      661 tatcaaagac cagcagggaa ctagccggca gattcgcctt ttacagaccc tagggctgac
      721 tagaatccga attacaacca ataaatacct agccttccta acactctata ctgccctctt
      781 tctaaccctc tatctgagcc atttgctcat cgctttttta ctaaatggca atagtagctg
      841 gatctatccc gtcaccacct atagcagtag tggactggct tacagtttta tcaccacaac
      901 cattaaacct atttatcagg tcatcttgct agcctgtggc atgcactatc tctaccttct
      961 atttttgctg ggagtggcac agaccttggc tagagtctta aaaaatggac tggctggact
     1021 ggttgtcaca ctaggacttg tcatctctgc caacttcttt ccccatatct taaatccatt
     1081 cagcctttgg aatgcaggca atctggcaga cggaagtgct atcatctacc atcaattgac
     1141 aggatacagc attccaaaag tcttcacagt cctgctcatc agtaacctac tcatctattg
     1201 cctgcaattc tatctcctga caagaaaaag tgaggtctaa ccatgcgatt atccatacac
     1261 aatttgtgca aatcctacgg gaaaaagaac atactagacc agctaaacct agaactggtg
     1321 gaacctggaa tttgggcctt gattggacca aatggagctg gaaagacaac cctcctagac
     1381 tgcattgcca acctgcaatc ctttgattcg ggagagattt caataaatgg caaaaagcac
     1441 gataatacaa atgtctacca aacctttgcc tacctgcagg acaaccgtgt cctctaccct
     1501 gaattgacgg ggctggaaca cttgcggttg gtccagacta tccaagattt acccaaagag
     1561 cggattgagg aggtcattga ggaaatcggt atccgtgatt atgtgaagat ccctgtcaaa
     1621 aattattccc tgggaatgaa gcaacatctc ctgctggcta tcggtattat gaacaagccc
     1681 caggtcatgc tcttggatga acccttgaac ggcttggacc cgaccagcta cattcaaacc
     1741 cgaaaattgc tccagaaact agccaaaaat ggttcaacca ttatcgtgtc ttcccaccaa
     1801 ttaaacgaag tagaccaact aaccgaccaa ctgctctttc tcaaacaagg aaaaatcatt
     1861 gagtggaaac tggaacaggt tgggcgacaa tatgccattc agactagtga caatcagaca
     1921 gtgtatcaga aacttgggca agtgaaggga ctgactttgg ccaatgatag cattcaggta
     1981 gacacgagtg ttcacagtct gcatttctat ctagaccagc tcatggcttg tcaggtagaa
     2041 attttggata ttagcgttca ggagcaccag tccgaagaaa tctataaaga actatttgaa
     2101 tagggaggtc tgactatgaa tctactgctc cttttcattc tacgactgaa acgcaatgct
     2161 atttttctat ccctgataac cgctatcgcc cttatcccat ttgccatgtc ctatcggaat
     2221 gttctagagg ccgaaaacct gcgatttgag gatcgaaccc gtatcataca agtcaaaaaa
     2281 gaagctgaaa ttgtcttgta tgctgacgat aaggaagctc aagccttaga ccaggaaagc
     2341 atggattatt ataaaaaact cttggaactg acgaccacct acttagaaaa ggaacatatc
     2401 caaggaaaaa gtcaggaggt cttggaaacg gagttagaac tctaccagac catgcaaaac
     2461 tgggaggcaa acgggcacaa tatcaatcat tttacaaaca gcgaactggc agaacgtatc
     2521 acagtctata aaaaagtttt agagcaaaat ctgacctttc actatcctac tgctcccaag
     2581 gatgtttatc tgaccttgtt acaagttctt ccagctagta actatatgat tcctctcgtc
     2641 atctgctgtc tcttagtctg gctcctgctg accgaccttt ccaaacatcg tggtctcctc
     2701 tttatcaacg gactatcccc tggtcaatat gcctctagcc tgaccttact tgctcttctc
     2761 ctccaagttg ctatctatgc tctcatcctg ttcatgctac ttctattggc acatcagttc
     2821 caatttacat tccaagaaga ctatcctcta ctagtcggca caaatactct atctaccata
     2881 tctatcaggg aacaattaca gaaactcctg ctggtaatgg ctggagtgac aggtttctat
     2941 ctgaccttta tccgattagc aactgctaaa gtcctacaaa catacaagcg aaaataagcc
     3001 acctcgaaaa tggtggtttt ttgctggcaa aaaaacgatg ccagttcaga caccgttata
     3061 tcttgataca agccaagcca caatccaaca tggatacctg tttatgatga gtaatcatcc
     3121 taatcaccct ttctgatgct aacatcggca taggcatcta ttttgaggat actttcctta
     3181 ttagctcctt cttcaggaac ttctagtaac tttgccccac tattcaactt gacatcaaag
     3241 cctccatcgt aacttcgagg cagagtaata tctacagtac cattccatgt atcaacataa
     3301 acttctttaa aagtagctcc ctttgccaat gcaatttttg cttttaaact actcttccca
     3361 cttgcgacgg taactaactt aaaacccttt ttacccaatg gtatataagc atcgttttca
     3421 ctaatatctg ccttctcaag tgttgacatt gctgcttcag aaattctccc tgtcaaacta
     3481 atcgtcgtca cttcttggtc tgtttccaca atttcaagtt caaaaggctg ctcactacca
     3541 tagatttcaa tagtattaat ttctttgctt gttacagtcc aagacttagc aatctctaca
     3601 tctgttttgt cactctctaa acttaggtaa atcgcaacgc ctaaaaaagt aatgattaaa
     3661 atgaaaaatg gaattatttt tttcattaca agtgccctcc ttaaactatt taaactccct
     3721 actagaaaaa agtaagtacg aactcaataa atagacaaca ctaaatatca atgcaatcag
     3781 actagacgga gtaaaaaatt ctgtttgatt ggtgattaac tttacctgat taaaaagaaa
     3841 gaaatgagag aagacatcat ttgccaagag acttgttgta acatacgaga ctaaattatc
     3901 aaacatcaag acaatcatgg tataaataag gtaggcttga taaatcttat ctacatactg
     3961 aaaaataaac agacataatt gagaaaaaca aagatgaaat ggcaactgtt taatgagcag
     4021 gtcaaatgct tcacccatat ctacttgtcc attccaaaaa attctacata caattactgt
     4081 aaaaaatagt aaaagcgtat atgcaaaaca cagggacaag atttcaaata atttataaaa
     4141 gtaaactgaa aaacgagagg agctttttat gattgcatgg ttaatggtgc gattggtaaa
     4201 ttcttctccc cagactagat tacaagcact tgagaagaat agaggaataa accctgccac
     4261 tgaagataaa ataatcgtaa tacctccttg tccatcagtt tctctcatca gataagcgaa
     4321 gagtactcct aaaagaatca ccagagagac tggaaaaatt aaagtccttt ctttccatat
     4381 cctataaaag tctgatttca ctttatggaa catgaggaac ctcctctctt gtaatcaaag
     4441 atagataata ggattcaaaa ctcggttgaa atttaatgat ttcctcgatt tgaatatcat
     4501 ttttccgtaa gcaatcaata atccagctgg ttgatttccc aatttctgaa agctctattc
     4561 cttcatcggt cactaccgcc tcaattccct cggaaagtaa cacttcaagc gcttcatgct
     4621 ccttatctac tctaacaatc cgtttggttt ggagtaggtt ttgcaaggca tctttttgga
     4681 ttatttgcaa cacttttcct ttgctcatga taatatactt atcaacgacc aagtctagtt
     4741 cagacaagat atgacttgaa actagaatag tcatacgata ctcatttttc aaaagcagaa
     4801 gaatctcacg aatttcctta atacccacag ggtccaaacc gtttattggc tcatctaata
     4861 taagtagttt gggccaatca cagatagcca acgctattgc caaacgttgc ttcattccaa
     4921 gagaaaaatc tttcactttt ttcttagaat ctacaccctc aagtccaacc atacgtaata
     4981 gatttttgac tttatctata tccgccccaa ttcctaaacc tatcatttga acacgaagat
     5041 tgtcacctgc agataaatgg ggatacagag caggtgactc tacaatacaa gaaacagctt
     5101 gactctctaa accgcttatt tctccagaat tactcgaaat caatcctgca agaattcgga
     5161 ttaaggtagt ctttccagca ccattttctc ccactagacc acaaatttct ccacagttaa
     5221 tatcaaaact aatattatct aaaacttttt gctttccgta agttttggat actgctgtaa
     5281 catttaataa tgtatttgcc atagcaacct cctaaaaaga aaagtcgata gaaaagtgac
     5341 aaactatcga ccagtcaagt tattaaatta tttggtgaac ggaaccatgt gaactaatcc
     5401 cagcaaagga aaccgattcc ataccaaaag tatagacaaa tttgaccagc tgttattttt
     5461 gttttttctt ccatattcaa ttttctcatg gcggtttttt gtaacc
//
LOCUS       DASGAC010000138         5500 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.139, whole genome shotgun sequence.
ACCESSION   DASGAC010000138 DASGAC010000000
VERSION     DASGAC010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5500
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.139"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(161..1693)
                     /locus_tag="U1335_001739"
     CDS             complement(161..1693)
                     /locus_tag="U1335_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM5232196.1"
                     /translation="MLLATQHLTLDNQKDLRNLVHDLNLIVNPGDKIAIIGEEGNGKS
                     SLLLTLMDSTLVTDYLLISGSIHRYFHSPVYIPQSLPLEIAELTLNDYFFGDMDSDID
                     YGLLYLYAEQLQFNSERFASQQLIGSLSGGEKLKIQLIKSLATPSDIIFLDEPSNDLD
                     LDTLLWLENYIITSPKTILFVSHDEDFLSRTATKIIHLESVKKKTLAQTKVEELDYQD
                     YAQKRQQAYQKQVQQARNDKKEFDKAMNKHLRQKSQVRHTLLNTHDATLGRLIAKKMK
                     NVLSREKRYERMKENLTQVPFHEDAISLFFSDISPLPARKQVLHLENFQLKVDEQLLV
                     QNIHFNLNGQEKVGIIGQNGIGKSSFLKIIYQKLRQRADINLGYMPQHYTEVLDEPNT
                     PLDFLLENGNREQEQLILTHLASLQFTRQEVHHKICELSGGQKAKLLLLKMVLDQANF
                     LLLDEPSRNFSPTSQPYIRQLFADYPGGLVCVSHDRRFLKEVCQRIYQLTENGLEELE
                     QI"
     gene            1994..2485
                     /locus_tag="U1335_001740"
     CDS             1994..2485
                     /locus_tag="U1335_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5232197.1"
                     /translation="MAITGIEQADILEIDKQVRLRRYDGQHDFAFEWHQDIELVWLVD
                     GDKERYSHDLLNRMYDYLSKNGECYFIEIFEDNQFIPIGDVTLFADDFAIAIGDKRYW
                     KKGIGTKVLQRMIERAREVGLEEILVEEIYDWNLGSRKLFEKCGFEAVEKTKKGWSYK
                     MIL"
     gene            complement(2540..3280)
                     /locus_tag="U1335_001741"
     CDS             complement(2540..3280)
                     /locus_tag="U1335_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004254183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5232198.1"
                     /translation="MAQLKINVHDLHKSYGKNEVLKGITAKFYEGDVVCIIGPSGSGK
                     STFLRTMNLLETITSGQVTVDGYDLTDPKTDVDAFRSNVGMVFQHFNLFPHMSVLDNI
                     TFAPIEHKLMDKSEAEKVGMELLEKVGLADKRDAMPDSLSGGQKQRVAIARALAMNPD
                     IMLFDEPTSALDPEMVGDVLNVMKDLAEQGMTMLIVTHEMGFARKVANRVIFTDGGEF
                     LEDGTPEQIFDNPQHPRLQDFLDKVLNV"
     gene            complement(3280..5475)
                     /locus_tag="U1335_001742"
     CDS             complement(3280..5475)
                     /locus_tag="U1335_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding
                     protein/permease"
                     /protein_id="HEM5232199.1"
                     /translation="MKKKLRMLLASILPVFFIFTGVKADDTIDIVFDNAYAPFEFKDS
                     DQIYKGLDVDIINEVAKSSGWTMNQSFPGFDAAVNAVQAGSADALMAGTTITEARKKV
                     FTFSDPYFDTKIVIATTKANTISSYKDLKGKTVGVKNGTAAQNFLEENKDKYGYNVKT
                     FDTGDLMYNSLSAGAVNAVMDDEAVIQYAIQQGQDLSIDMDGEAIGSFGFSVKKGSQY
                     EYLVEDFNTALAAMKEDGTYEKILNKWLGSSNTTESTDYSSRLSLTGNASTKATPVKS
                     SYTIVADSSFAPFEYQDESGNYVGIDMELIKAIAEQQGFTITIQNPGFDAALNAVQAG
                     QADAVIAGMSITDARKEIFDFSNAYYTSNILLAVKNGSDIASYEDLKGKTVGAKNGTA
                     SYSFLEENKAKYGYTLKAFDEASSMYDSLNSGSIDALMDDEAVLLYAIQQGRNFATPI
                     PGEKSGEYGFAVKKGANPELIEMFNNGLAALVESGKYDEILNKYFNSTEEASTSTSTV
                     DETTIVGLLKNNYGQLLSGLGITIGLALLSFAIAIVIGIIFGMFAVSPVKALRVTASV
                     FVDVVRGIPLMIVAAFIFWGIPNLIESITGQQSPINDFVAGTIALSLNSGAYIAEIVR
                     GGIQAVPAGQMEASRSLGISYGTTMRKIILPQAGKIMLPNFINQFVITLKDTTIISAI
                     GLVELFQAGKIIIARNYQSFRMYAILAIIYLVVITLLTRLARKLEKGGK"
BASE COUNT         1571 a         1002 c         1190 g         1737 t
ORIGIN      
        1 gggaaaggta gctttttctt tgtgcttata ctataatacc cgttgtgcta gaagatttgc
       61 aacttgctct tgataaatta taggttgtga atcgaatagc atgatttcat tctttatgaa
      121 taaataaaag gaaatttggc gtgtgtgcca ttttcctttt ttatatctgt tcgagttctt
      181 ccagtccatt ctcagttagt tggtagattc tttgacaaac ttctttcaaa aagcgtctgt
      241 cgtgtgatac gcataccaaa ccacctggat aatcggcaaa tagttgacga atatatggct
      301 gagaagtggg agagaagttt cgactgggtt catctaataa aagaaaattg gcttgatcaa
      361 gaaccatttt taacaagagt aacttggctt tttgtccccc cgaaagttca cagatcttgt
      421 gatgaacttc ttgtcgtgta aactgcagac tggctagatg cgttaagata agttgttcct
      481 gctcacgatt gccattttct aataaaaaat caagtggagt gttaggctca tcaaggactt
      541 ctgtatagtg ctggggcatg tagcccaagt ttatatccgc tcgttgcctg agtttctgat
      601 agattatctt tagaaagctg gatttaccaa ttccattttg tccaatgata ccaactttct
      661 cttgtccatt taagttgaaa tggatgtttt gaacgagtag ttgttcgtca acctttaatt
      721 ggaagttttc taagtgaagc acttgttttc tagctggtag tggtgaaatg tctgagaaga
      781 agagggaaat ggcatcttca tgaaaaggaa cttgtgtgag attttccttc attctttcat
      841 atcgtttttc acgtgataag acattcttca ttttcttggc tatgagccgt cctagtgtgg
      901 catcatgggt gttgagcaag gtatgacgaa cctgtgattt ttgacgtagg tgcttgttca
      961 tggctttgtc aaattctttt ttgtcattcc gtgcctgttg gacctgcttc tgataagctt
     1021 gttgtcgctt ctgtgcgtag tcctgatagt ccaattcttc aaccttggtt tgagcaagtg
     1081 ttttcttttt aaccgattct aggtgaatga tttttgtagc tgttctgcta agaaagtctt
     1141 catcgtggga aacaaataga atggttttag gactcgtgat gatatagttt tcaagccaaa
     1201 gtaaggtatc taaatccaag tcattggacg gttcatccag aaaaataata tcagatggag
     1261 ttgctagaga tttgattaac tgaattttta atttttcgcc acctgacagg cttccaatca
     1321 attgttgact ggcaaatcgc tcgctgttaa actggagctg ctcagcatag aggtagagta
     1381 ggccgtaatc aatgtcactg tccatatctc cgaagaagta gtcgttcaag gttagctctg
     1441 ctatttccag tggaagactt tggggaatat agactggcga gtgaaaatat cggtgaatgc
     1501 tgcctgatat gagtagataa tctgttacaa gagttgaatc catcaaggtg agtaatagac
     1561 tggattttcc atttccttct tcgccgatga tagctatttt atcgccaggg ttgacaatga
     1621 ggtttaggtc atgaaccaga tttctcaaat ctttttgatt gtcgagggtt aggtgttgag
     1681 tggctagtag cataaggcct cctttacaag aaaaaacaca ctacctattt agtagtgtgt
     1741 cgaaatctgc tcaaaaagac cctattcaag gagtagaggg aacagaaaaa tggacgcaag
     1801 aaaactacta aataagtata gaacttaaat tgagttttac ttgttattgt ccatttctcc
     1861 ttacctcgct tgctttattt gctttagtat agcattttga taaattcttg tcaattagca
     1921 tactataaca tttattgata ttgatagaga tgtatgttaa aatgaactta ttgtaaatga
     1981 gagaggatcc gaaatggcaa tcactggaat tgaacaagca gatattttag aaatagacaa
     2041 acaagtccgt cttcgtcggt atgatggaca acatgatttt gcttttgaat ggcaccaaga
     2101 tatagaattg gtctggcttg ttgatggcga taaagaacgc tatagtcatg acttgctcaa
     2161 tcgtatgtat gattatttgt ctaaaaatgg cgaatgttac tttattgaaa tttttgaaga
     2221 caatcagttt atcccaattg gtgatgtgac gctgtttgca gatgattttg caattgccat
     2281 tggagataag cggtattgga aaaagggaat aggaaccaag gtattgcagc gaatgatcga
     2341 gcgtgcaagg gaagtgggtc ttgaggaaat acttgtcgaa gaaatttacg attggaatct
     2401 tggttcacga aagctatttg agaaatgtgg ctttgaagct gttgaaaaga caaagaaagg
     2461 ttggtcctat aagatgatat tgtaaattaa tttggagata ccaaaaaaac cttgacgcaa
     2521 gtcaaggctt tttgcatatc tacacgttca agaccttatc aaggaagtct tgtaaacgtg
     2581 gatgttgtgg gttgtcaaag atttgctctg gtgtaccatc ttcaaggaac tcaccgccat
     2641 cagtgaagat aacgcgatta gcaaccttgc gggcgaagcc catctcgtgt gtgacgatta
     2701 acatggtcat accttgctca gccaagtcct tcataacgtt gagtacatcg ccaaccattt
     2761 cagggtcaag ggcagaagtt ggttcgtcaa agagcatgat gtctgggttc atagcgaggg
     2821 cacgagcgat ggcaacacgt tgcttctgac cacctgatag gctatcaggc atagcgtcgc
     2881 gtttgtctgc caatccaact ttttccaata attccatgcc gactttttca gcttcagact
     2941 tgtccatcaa tttgtgttcg attggcgcaa atgtgatatt gtctaggact gacatgtgtg
     3001 ggaaaaggtt aaagtgctgg aataccattc cgacatttga acggaaggca tcaacatctg
     3061 tcttaggatc ggttaagtca tatccatcga ctgttacttg accacttgta atggtttcaa
     3121 gtaagttcat tgtacgaagg aaggtcgatt tacctgaacc agaaggaccg atgatacaaa
     3181 caacatcgcc ttcatagaac ttagcagtaa tacctttgag gacctcgttt ttaccataag
     3241 acttgtgtaa gtcatggacg ttgattttta attgagccat tatttgcctc ctttttcgag
     3301 tttgcgtgct aagcgagtca agagtgtgat aactaccaaa taaatgatgg caagaattgc
     3361 atacatacgg aaggattggt agttacgtgc aataatgatt ttacctgctt ggaagagttc
     3421 gaccaaacca atcgcagaaa tgatagtagt atctttcaga gtaataacaa actggttgat
     3481 aaagttaggc aacataattt taccagcttg aggtaggata atcttacgca tggttgttcc
     3541 ataggaaata cccaaactcc gtgacgcctc catttgacca gcaggaacgg cttggatacc
     3601 accgcggaca atctcagcaa tataggcacc agagttgagg gatagggcga tcgtaccagc
     3661 gacaaaatca ttgattggag attgttgacc agtaatcgac tcgattaagt ttggaatacc
     3721 ccagaagatg aatgcggcaa caatcatcaa aggaataccg cggaccacat caacgaacac
     3781 tgatgctgtc acacgaagtg ctttaactgg gctgacagca aacataccaa agataatgcc
     3841 gatgacaatt gcgatagcaa atgatagaag ggcaagtcca attgtgatac caagacctga
     3901 gagcaattga ccgtagttgt ttttcaaaag accaacaatc gttgtctcat caacagttga
     3961 agtcgatgtg cttgcttctt cagttgagtt gaaatactta ttaaggattt catcatactt
     4021 tcctgattca actagggcag ctaagccgtt gttaaacatt tcaattaatt ctgggttggc
     4081 acctttttta acggcaaatc cgtactcacc tgatttttcg ccaggaattg gtgttgcaaa
     4141 gttgcgacct tgttggatgg catatagaag aaccgcttcg tcatccataa gagcatcaat
     4201 agaaccagag tttaaactgt catacatact tgaagcttcg tcgaaggctt ttagggtgta
     4261 accatatttt gccttgtttt cttctaagaa actatatgaa gcagtaccat ttttagctcc
     4321 aacagttttc ccttttaagt cttcgtaaga agcgatgtcg ctaccatttt taacagctaa
     4381 taggatgttt gaagtatagt aggcgtttga gaagtcaaag atttccttac gagcatctgt
     4441 gatagacata ccggcaataa ctgcatcagc ttgtccagct tgaacagcat ttagtgcagc
     4501 gtcgaaacca gggttttgaa tagtaatggt aaatccttgt tgttcagcga ttgccttgat
     4561 taattccatg tcgattccga catagttacc tgattcatct tggtattcaa atggagcaaa
     4621 tgatgaatca gctacaatgg tgtagcttga tttgacaggt gttgctttag ttgatgcgtt
     4681 tcctgttaag cttaagcgag aagaataatc agtgctctca gtagtattgg aagagcctag
     4741 ccatttattc agtatctttt cataagtacc atcttccttc atggcagcaa gtgctgtgtt
     4801 gaagtcttca acaaggtatt catattggct accttttttt acagagaatc cgaatgaacc
     4861 gatagcttcg ccatccatat caatgcttaa gtcttgacct tgttggatag cgtattgaat
     4921 aaccgcttcg tcgtccatta cggcattcac tgcaccagca gaaagactat tgtacattaa
     4981 atccccagta tcaaaagttt ttacgttgta tccgtacttg tctttgtttt cttctaggaa
     5041 gttttgggct gcagtaccat ttttgacacc aacagtctta cctttaaggt ccttatatga
     5101 agagatggta tttgcctttg tggtagcgat aacgattttg gtgtcgaaat aagggtctga
     5161 gaaagtaaat actttcttac gcgcttcggt gatagttgta cctgccatta gggcgtccgc
     5221 agatccagcc tgtacagcat tgacagctgc atcaaatcct gggaagcttt gattcatggt
     5281 ccaacctgag ctcttggcta cttcgttgat gatgtcaaca tctaatcctt tataaatttg
     5341 atctgagtct ttaaactcga atggggcgta agcattgtca aatacgatat caatagtatc
     5401 gtcagcttta acgccagtaa aaataaagaa tactggcaga atgcttgcca ataacatgcg
     5461 taattttttc ttcatttcca tactccttct attataaaat
//
LOCUS       DASGAC010000139         5443 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.140, whole genome shotgun sequence.
ACCESSION   DASGAC010000139 DASGAC010000000
VERSION     DASGAC010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5443
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.140"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            42..557
                     /locus_tag="U1335_001743"
     CDS             42..557
                     /locus_tag="U1335_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HEM5232200.1"
                     /translation="MFKKYTFDPKKFRLGMRTFKSGFAVFLVILLFGFMGWEGIQIAA
                     LTAVFSLREDFDQSVHFGASRILGNSIGGFYALLFFILDRLFLDHFWVTAVFVPIFVM
                     LTIMTNVAMNNKAGIIGGVSALLIITLSIPAGDTIQYVFIRVFETFIGVFIAILVNYD
                     VNVIKKRFQNK"
     gene            633..1004
                     /locus_tag="U1335_001744"
     CDS             633..1004
                     /locus_tag="U1335_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM5232201.1"
                     /translation="MREKEFRRSLAIFPIGSVMKLTDLTARQIRYYEDQGLIKPDRNE
                     GNRRLYSLNDMDLLLEIKDFLDEGLNIAAIKKEYANREAKAKVQKQQKTLTDEDVRRI
                     LHDEFSRQGRFSSPSSIFRSS"
     gene            1033..2379
                     /gene="glnA"
                     /locus_tag="U1335_001745"
     CDS             1033..2379
                     /gene="glnA"
                     /locus_tag="U1335_001745"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008808235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEM5232202.1"
                     /translation="MTFTVADIKRDIKEKNVTFLRLMFTDIMGVMKNVEIPATDEQVE
                     KVLSNKVMFDGSSIEGFVRINESDMYLYPDLDTWTIFPWGDENGRVAGLICDIYTTDA
                     KPFAGDPRGNLKKSLRHMEEAGFSSFNLGPEPEFFLFKMDEQGNPTLEVNDKGGYFDL
                     APTDLADNTRREIVNVLTEMGFEVEASHHEVAVGQHEIDFKYADVLKACDNIQIFKLV
                     VKTIARKHGMYATFMAKPKFGIAGSGMHCNMSLFDKDGNNAFFDPEDPRGMQLSQTAY
                     HFLGGLIKHAYNYTAITNPTVNSYKRLVPGFEAPVYIAWAGKNRSPLVRVPASRGMGT
                     RLELRSVDPTANPYLAMAVLLEVGLEGIQNKIEAPAPVESNIYAMSDEERREAGITDL
                     PSTLHNALKALREDEVVRAALGDHIYTNFLEAKKIEWASYATYVSQWEIDNYLDMY"
     gene            complement(2653..4332)
                     /locus_tag="U1335_001746"
     CDS             complement(2653..4332)
                     /locus_tag="U1335_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019321901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEM5232203.1"
                     /translation="MSSVNLKPHEVGVFAIGGLGEIGKNTYGIEYKDEILIVDAGIKF
                     PEDDLLGIDYVIPDYSYIVENLDRVKGLVITHGHEDHIGGIPFLLKQANVPIYAGPLA
                     LALIRGKLEEHGLLRDATLHEINHNTELAFKHLKVSFFRTTHSIPEPLGIVVDTPQGK
                     IVCTGDFKFDFTPVGEPADLHRMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIM
                     KLIEGIHGRIIFASFASNIFRLQQAADAAVKTGRKIAVFGRSMEKAIVNGIELGYIKV
                     PKDTFIEPNEIKEYPASEIMILCTGSQGEPMAALSRIAHGTHRQVQLQPGDTVIFSSS
                     PIPGNTTGVNKLINILIEAGVDVIHGKINNIHTSGHGGQQEQKLMLRLIKPKYFMPVH
                     GEYRMQKIHASLAVDTGVPKDNIFIMENGDVLALTKDSARLAGHFNAQDIYVDGNRIG
                     EIGAAVLKDRRDLSEDGVVLAVATVDFKSKMILAGPDILSRGFIYMRESGELIRESQR
                     VLFNAIRIAMRNKDANIQTVNGAIVNALRPFLYEKTEREPIIIPMILTPDR"
     gene            complement(4336..4566)
                     /locus_tag="U1335_001747"
     CDS             complement(4336..4566)
                     /locus_tag="U1335_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000639444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-dependent RNA polymerase auxiliary subunit
                     epsilon family protein"
                     /protein_id="HEM5232204.1"
                     /translation="MIYKVFYQESKISPRREQTRALYLDIDAASELEGRIIARELVET
                     NRPEYNIEFIDLLSDNHLEYEKEHADFKITEF"
     gene            4869..>5443
                     /locus_tag="U1335_001748"
     CDS             4869..>5443
                     /locus_tag="U1335_001748"
                     /inference="COORDINATES: protein motif:HMM:TIGR01716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rgg/GadR/MutR family transcriptional regulator"
                     /protein_id="HEM5232205.1"
                     /translation="MGTVPQMSLGEFYRELRNSRLVKQKDVVRGDFTAAQLSRFESGK
                     SMLAADKLIVAVEGINMTMEEFTYKYHGYKEAPHIELANLISDLYYQQDKEALKALLT
                     SDLLADEGELYSRLNAIVIKVAIVALEGIDNVEEEDRQYLADYLFAIEEWTSFELYLF
                     MNAQMLLNNRMLLYFAHDLCKEEKSFNKLRK"
BASE COUNT         1514 a          991 c         1314 g         1624 t
ORIGIN      
        1 atttgctatt ctattttccg aaatcatgtt agaatagagg tatgtttaaa aaatatacat
       61 ttgatccaaa gaaatttcgg ttggggatgc ggacgttcaa atcgggtttt gcagtcttcc
      121 tagttattct tttgtttggt tttatgggct gggaagggat tcagattgcg gctttgacgg
      181 ctgtgtttag tttacgagaa gacttcgatc agagtgtcca ttttggagct tctcgtattc
      241 tgggtaattc tattggtggt ttttatgcgc tacttttctt tattttggat aggttattct
      301 tagatcattt ttgggtaact gcggtttttg ttccgatatt tgtcatgtta acgattatga
      361 caaatgtggc gatgaataat aaagcgggaa ttattggtgg tgtatcagct ttattaatta
      421 ttacattgtc gattcctgct ggtgatacga ttcaatatgt gtttattcgt gtatttgaaa
      481 cctttatcgg agttttcatt gcgattctag ttaattatga tgtgaatgtt ataaaaaaac
      541 gttttcagaa taaataatgt tataaaatat aacatcacct attgacctca aaaaaaaatt
      601 ctcctataat ggtaggcaga aaggagttcg ttatgagaga aaaagagttt cgtcgttcct
      661 tagctatctt tccaatcggt agtgtaatga agttgacaga tttaactgct cgtcaaattc
      721 gttactatga agatcaaggc ttgattaagc ccgatcgcaa cgaagggaat cgtcgcttgt
      781 attctctaaa cgatatggac ttacttttag aaatcaagga ttttttggat gaaggtttga
      841 atattgctgc gattaagaag gaatatgcaa atcgggaagc gaaagctaag gtccaaaaac
      901 agcagaaaac cttgactgat gaagatgtcc gtcgtatctt acatgatgaa ttcagtcgtc
      961 agggacgatt ttcaagtcct agttccattt tccgttcgtc gtaattagct tttaaaatag
     1021 aggagaaaaa taatgacatt cacagtggca gatatcaagc gcgatatcaa agagaaaaac
     1081 gttaccttcc tacgtcttat gtttacagac atcatgggag tgatgaaaaa cgtagaaatt
     1141 ccagcaactg atgagcaggt cgaaaaggtt ttgtcaaata aggtcatgtt tgatggttca
     1201 tctattgaag gatttgttcg tatcaatgaa tcagatatgt atctttaccc agacttggat
     1261 acatggacta tcttcccttg gggtgatgaa aatggccgtg tagctggctt gatttgtgat
     1321 atttatacaa cagatgctaa gccttttgct ggtgacccac gtggaaattt gaagaaatcg
     1381 cttcgtcaca tggaagaggc aggtttctct tcattcaacc ttggtccaga accagaattc
     1441 ttcctcttta agatggacga acaaggaaat ccaacgcttg aagtaaatga taaaggtggt
     1501 tactttgacc tcgcaccaac ggacttggct gataatacac gtcgcgaaat cgtcaatgtc
     1561 ttgacagaga tgggctttga agttgaagcg agccaccacg aagtggcagt aggtcagcat
     1621 gaaattgact tcaaatatgc ggatgtctta aaagcttgtg acaatattca aatcttcaag
     1681 ttagttgtta aaacaattgc tcgtaagcat ggtatgtatg cgacatttat ggccaagcct
     1741 aagtttggta ttgctggctc aggtatgcac tgtaacatgt cactctttga caaggatgga
     1801 aacaatgcct tctttgatcc agaggatcct cgcggtatgc agctgtctca aactgcttac
     1861 catttcctag gtggtttgat taagcatgct tataactata ctgctattac aaacccgaca
     1921 gtgaactctt acaagcgttt ggttccaggc tttgaagctc ctgtgtatat tgcttgggct
     1981 ggtaaaaacc gctcaccatt ggttcgcgta cctgcatcac gtggaatggg aactcgtttg
     2041 gaattgcgct cggttgatcc aactgccaac ccatacttag ctatggcagt tctattggaa
     2101 gttggcttgg aaggtattca aaataaaatt gaagcaccag caccagtaga gtctaatatc
     2161 tatgcaatgt ctgatgagga gcgtcgtgaa gcaggtatca ctgatcttcc ttcaactctt
     2221 cacaatgcat tgaaagctct tcgtgaagac gaggtagttc gtgcagctct aggtgatcat
     2281 atctatacga atttcttgga agctaagaaa atcgagtggg caagctatgc aacctacgtt
     2341 tctcaatggg aaattgataa ctatttggat atgtattaaa aaaatggtcc ggtggaccat
     2401 tttttcatga gcttgaaaac cagatagcga attaggaccc cgacgggtcc tttgttcacg
     2461 agccgagaaa ttggaaagcg tgtaatggtc cagtggagtg aaatagtctg ggaagagact
     2521 gtttcggcct gagctaagaa atagcggggg tgaggggatg gacatgagct tgaaatcggt
     2581 cttttttcaa gctggattat cttgttaata taaaataaat cccagaggtc tcacctctgg
     2641 gattttagtg tgctatcggt caggcgtcag aatcattggg ataatgattg gttcacgctc
     2701 tgttttttcg tataggaatg gtcttagggc gttgacgatg gcaccgttga ccgtttggat
     2761 attggcatct ttattgcgca tggcaattcg gatagcgttg aaaaggacgc gttgactttc
     2821 gcgaataagc tcaccagatt cacgcatgta gatgaaaccg cggctgagaa tatctggacc
     2881 tgccagaatc atcttagatt tgaagtcaac ggttgcaaca gctagtacga caccgtcttc
     2941 tgagaggtca cggcggtctt tgaggacagc tgcgccgatt tcaccaatgc ggtttccgtc
     3001 cacatagatg tcctgagcgt tgaagtgccc tgctaagcgg gcagaatcct tggtcagagc
     3061 taggacatca ccgttttcca tgatgaagat gttgtctttt ggcacgccag tatcaactgc
     3121 cagactagca tggatttttt gcatgcggta ttcgccatgg acaggcatga agtattttgg
     3181 cttgatcaag cggagcatga gtttttgctc ttgctggccg ccgtgcccag aggtatggat
     3241 gttgttgatc ttgccatgaa taacatcgac accggcttca atcaagatat tgatgagctt
     3301 gttaacacct gtggtatttc ccggaatagg actggacgag aaaataaccg tgtcgcccgg
     3361 ctggagttgg acctgacggt gagtaccgtg ggcaatgcgg gagagggcag ccatcggctc
     3421 accctggcta cctgtacaga gaatcataat ctcgctggca gggtattctt taatctcgtt
     3481 cggctcgata aaggtgtctt ttggtacctt gatatagcca agttcgatac cattgacgat
     3541 ggccttctcc atagagcgtc caaagacagc aattttgcgt ccggtcttga ctgcagcatc
     3601 agccgcttgt tgcagacgga agatgttgga ggcaaaggaa gcaaagatga tgcgtccgtg
     3661 aatgccttca atcagtttca tgatggactg accgaccact ttttccgagt tggtaaaggt
     3721 tggaacttcc gcgttggtgg agtcggaaag gaggcagaga acaccttctt caccgagagc
     3781 agccatgcgg tgcaagtctg cgggctcacc aacaggagtg aagtcgaact taaagtcacc
     3841 ggtacagacg attttccctt gaggggtatc aacgacgatg ccgagtggct ctggaatgga
     3901 gtgggtggtg cggaagaagc tgaccttgag gtgcttgaag gctaactcag tattgtggtt
     3961 gatttcatgc aaagtcgcat cacgaagcag tccgtgttct tccagttttc cacgaataag
     4021 ggcgagggcc aaaggacctg catagattgg gacattggct tgcttgagca agaagggaat
     4081 gcctccgatg tggtcttcgt gaccgtgggt aataaccaga cctttaacgc ggtctaggtt
     4141 ttcaacgatg taggagtagt ctgggataac gtagtcgata cccaataggt catcttcagg
     4201 gaacttgata ccggcatcga cgatgagaat ttcatcctta tactcgatac cgtaggtatt
     4261 tttcccgatt tctcccaaac caccgatggc gaaaacgcca acttcatgag gttttagatt
     4321 gactgatgac atggattaaa actccgtaat tttgaaatct gcgtgctctt tctcgtattc
     4381 aagatgattg tctgataaga ggtcgataaa ttcgatgttg tattcagggc ggttggtttc
     4441 caccaattca cgcgcgataa tacgaccttc caattctgat gcagcatcga tgtctagata
     4501 aagagcacgt gtttgctcgc gacgtgggct aatttttgat tcttgataga atactttata
     4561 aatcatgtgt agtatagttc ctttcttttt gactggcaac tatgaaaaaa gccccaaaca
     4621 gttggggctg tctggtaatg cttattcaat tttctcgagt tgtcaattta ttcagtctaa
     4681 atattactct tcattatacc ataaaatttg ctgatggtaa aagggtttgg taggaaaatg
     4741 gaaaagtgtc gtgattttca gaaacaaaca gtcatttggc agaataataa gcaaaattga
     4801 caaaaatata tttggatatt ataataaatg gaagtggaat tttaatgcat caagaaaggg
     4861 gatgagtcat gggtacagta ccacaaatga gtttaggcga attttacagg gaactccgaa
     4921 attctcgctt ggttaagcaa aaggatgttg tcagaggaga ctttacagca gcacagttgt
     4981 cacgctttga atcgggaaaa tccatgttgg cagcggataa gttaatcgtg gctgtcgagg
     5041 gtattaacat gaccatggag gagtttacct ataaatacca tggttacaag gaagcgcccc
     5101 atatcgagct ggccaatctc atctcagatt tgtattacca gcaggacaaa gaagctttga
     5161 aagctttatt aacatcagat ttgttagcag atgaaggaga actttactct cggcttaatg
     5221 ctattgttat caaggtcgct atagtcgctt tagaagggat agataatgtt gaagaagaag
     5281 ataggcaata tttggcagac tatctcttcg ctattgagga gtggacaagt tttgagcttt
     5341 atctatttat gaatgcacag atgttgttga ataatcggat gttattgtat tttgctcatg
     5401 acttatgtaa ggaagaaaaa tcttttaata aacttaggaa aca
//
LOCUS       DASGAC010000140         5368 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.141, whole genome shotgun sequence.
ACCESSION   DASGAC010000140 DASGAC010000000
VERSION     DASGAC010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5368
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.141"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            22..396
                     /locus_tag="U1335_001749"
     CDS             22..396
                     /locus_tag="U1335_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002305392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1149 family protein"
                     /protein_id="HEM5232206.1"
                     /translation="MEIIRDKEFVNQYHFDARNHAWEKENGIPETKLKVDFQLIEQNR
                     AENRTSMITILRFMIVLDHFVISGAMSQAVHLPNRLVEEPTEFTDEEKRVLVEPLLDI
                     LKRMTYEVTEIAFDAPGVNLEF"
     gene            398..1249
                     /locus_tag="U1335_001750"
     CDS             398..1249
                     /locus_tag="U1335_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM5232207.1"
                     /translation="MKLAVITDSSAVLNVQSIERDDLFVLSIPVSIDGENYIEGQNLT
                     VEEFYQKMASSKELPKTSQPSLMELEEILRGLKDKGYTHALGLFLSSGISGFYQNIQY
                     LKDEFDNLTVAFPDTKITSAPLGMMVENVLKWADSGLSFEEILGKLDQEIGKTTAFIM
                     VDDLNHLVKGGRLSNGAALLGNLLSIKPILYFTGEGKIEVYEKVRTEKKAIKRLLEIL
                     QEQTTEGQYQIAIIHANAPQKAENFKQQLEEAGVGSDLPIVSFGSVIGTHLGEGAVAF
                     GISPIIE"
     gene            1258..2025
                     /locus_tag="U1335_001751"
     CDS             1258..2025
                     /locus_tag="U1335_001751"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002262893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEM5232208.1"
                     /translation="MTIKVIIAGFKGKMGSTAVEMVKGDTELTLAALVDPFATETEVD
                     GVPVFKTKEEVASLEADVWVDFTTPKFAYENTRFALENGFAPVVGTTGFTPEEIEELT
                     DLSAEKGLGGLIAPNFAIGAILLMQFAAQAAKYFPNLEIIELHHDKKKDAPSGTAVKT
                     AELISQVRQSQVQGAADEEELIAGARGAEFDGFRIHSVRLPGLVAHQEVIFGAQGEGL
                     TIRHDSYDRISFMGGVNLGIKEVVKRSQLVYGLEHLL"
     gene            2022..3233
                     /locus_tag="U1335_001752"
     CDS             2022..3233
                     /locus_tag="U1335_001752"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEM5232209.1"
                     /translation="MKLNNLPSEFQEALPILEKIKAAGYEAYFVGGSVRDAILGRPIH
                     DVDIATSSYPQETKQIFPRTIDVGIEHGTVLVLDGGKEYEITTFRTEEEYVDFRRPSQ
                     VSFVRSLEEDLKRRDFTVNAFALDEEAQIVDIFDGMTDLENRTLRAVGIPAERFNEDA
                     LRIMRGFRFAATLDFEIEPTTFTAMVETAPLLEKISVERSFIEFDKLLMADFWRKGLR
                     AMIESKAYNFLPDLVGKGEQLARMLSSLAENFRFSTSEQAWAMLFVYLGNDNIKSFLK
                     KWKTSNDFQRSVVKLVEIYKLRQEGPVTKQICFKYGKEFLYLVEELRQAQGLTIDFAA
                     IDHIDQSLTIHDKHEIVVNGGHLMKAFDLKPGPILGELLKEVEFQIVEGQLKNEEQAI
                     MTFVKGILENE"
     gene            3226..5094
                     /locus_tag="U1335_001753"
     CDS             3226..5094
                     /locus_tag="U1335_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM5232210.1"
                     /translation="MSDFIVEHLTKSVGDKTVFADLSFIIHQGDRIGIIGVNGTGKTT
                     LLDVLSGRIGFDGDVSPFRTKNAYKIAYLTQEPDFDESKTVLDTVLSSDLRETQLIRE
                     YELLLSHYDEASQARLEKVMAEMDSLNAWEIESQVKTVLSKLGLTDLNKTVAELSGGL
                     RRRVQLAQVLLGNADLLLLDEPTNHLDIDTIEWLTTFLKNTKKSVLFITHDRYFLDNV
                     ATRIFELDRASLTEYQGNYQDYVRLKAEQDERDAALRHKKEQLYKQELAWMRRQPQAR
                     ATKQQARINRFHDLKGDLANKIDDSELEINFETSRIGKKVINFENVSFSYPDKPILAD
                     FNLLIQNKDRIGIIGDNGKGKSTLLNLIAGDLQADSGRVDIGETIRIGYFSQTIKGLD
                     ESKRVINFLQEVAEEAKTTSGMVSIAELLEQFLFPRNTHGTLIEKLSGGEKKRLYLLK
                     ILLQRPNVLLLDEPTNDLDIATLTVLEHFLQGFAGPVITVSHDRYFLDKVANKILAFE
                     DDGIQTFFGNYTDYLDEKVFLASSSAISLEKPKEKTEKIKENKKRMSYFEKQEWATIE
                     EDIAGLEERIAAIEAEMLTCGSDFTKLSDLQKELDEKNDLLLEKYERYEYLSELEG"
     gene            5095..>5368
                     /locus_tag="U1335_001754"
     CDS             5095..>5368
                     /locus_tag="U1335_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232211.1"
                     /translation="MKVLVMSYMVIYLLVTLGAALFSYLKTKKMNTLRLLLTVLSMLL
                     LAVTLYFYSQAYHDVQMVGFALGFTFISTLFLYNGTKEGSNFTTVML"
BASE COUNT         1538 a         1044 c         1287 g         1499 t
ORIGIN      
        1 tgtttatagg agaagttaga aatggaaatc attcgcgata aagaatttgt caatcagtat
       61 cattttgatg cccgcaatca cgcgtgggaa aaagagaacg gaattccgga aacaaaattg
      121 aaagttgact ttcaattgat tgagcaaaat cgtgcggaaa atcgaacatc catgattacc
      181 attttgcgct ttatgattgt actagatcat tttgtgattt caggtgccat gagtcaggcc
      241 gttcacttac caaatcgatt ggtagaagaa ccaactgaat ttactgatga ggaaaaacgt
      301 gttttggtag agcctctttt ggacatttta aaacgaatga catatgaggt tactgaaatt
      361 gcctttgatg caccaggagt gaatttggag ttttaatatg aaattagcag ttataactga
      421 ctcatcggct gttttgaacg ttcaaagtat tgagcgggat gacctgtttg tcctaagcat
      481 tccagtcagc atcgatgggg aaaattatat cgaagggcaa aatttgacgg ttgaagagtt
      541 ttatcaaaaa atggcttcat cgaaagaatt acctaaaaca agtcaaccga gtttgatgga
      601 attggaagaa attcttagag gcttgaaaga taaaggctat acacacgcac ttggcttatt
      661 cttgtcatca ggtatttcag gtttttatca aaatattcaa tacttgaaag atgagtttga
      721 taatctgaca gttgcctttc cagatacaaa aataacttca gcacctttgg gaatgatggt
      781 tgagaatgtt ctcaaatggg ctgactctgg acttagtttt gaagagattt taggtaagct
      841 ggaccaagaa attgggaaga caacagcctt tatcatggtc gatgacctca atcacttggt
      901 aaaaggtggt cgcttgtcca atggtgcagc cttgcttggc aatcttttga gcatcaaacc
      961 gattctgtat tttacaggtg agggtaagat tgaagtgtat gaaaaagttc ggacggagaa
     1021 aaaggctatc aaacgcttgt tagaaattct tcaagaacaa acgaccgaag gacagtatca
     1081 aattgctatc attcatgcca atgcacctca gaaggctgaa aactttaaac agcaattgga
     1141 agaagcaggt gtcggtagcg atttgccaat cgtgtcattt ggttcagtta tcggtacaca
     1201 cttgggagaa ggggcagtgg cctttggtat ttctcccatt attgaatagg agtttgcatg
     1261 acaattaagg taattatcgc aggattcaaa ggaaaaatgg gctcaacggc tgttgagatg
     1321 gtcaagggtg atacagaact gactctggct gccttggtgg atccctttgc gacagaaaca
     1381 gaagtagatg gtgttcctgt tttcaagacc aaagaagaag ttgccagcct agaagctgat
     1441 gtctgggtgg attttacaac gccaaaattt gcctatgaaa atacccgttt tgccttagaa
     1501 aatggtttcg cacctgtggt tggaacaaca ggctttaccc cagaagaaat tgaagaatta
     1561 accgacttgt ctgctgagaa gggattgggt ggcttgattg ctcctaactt tgcaatcggg
     1621 gctatcttgc tcatgcagtt cgcagcccag gcagccaagt atttcccaaa tcttgaaatc
     1681 atcgaattgc accacgataa gaagaaggat gcaccgagcg gaacggctgt aaaaacggct
     1741 gaactcattt cacaagtccg tcagtcacag gttcaaggtg cggcggatga agaagaactg
     1801 attgctggtg ctcgcggtgc agaatttgac ggcttccgta tccactcagt acgcttgcca
     1861 ggccttgttg cccatcagga agtgattttt ggggcacagg gagaaggctt gaccattcgt
     1921 catgactctt acgatcgtat ttcctttatg ggcggtgtca atctcggcat taaagaggta
     1981 gtcaaacgct cacaactcgt ttatggtttg gaacacttat tatgaaatta aacaatctgc
     2041 cttctgagtt tcaggaggct ttgccgattt tagagaaaat taaagcagct ggttacgagg
     2101 cttatttcgt tggtggctcc gtgcgggatg ccattctcgg taggcctatt catgatgtcg
     2161 acattgccac ttccagctat ccgcaagaaa ccaagcaaat ctttccgcgg actattgatg
     2221 tggggattga gcatggaact gtcctagtct tggatggtgg caaagagtat gaaattacca
     2281 cctttcggac agaggaggag tatgtcgact tccgcagacc gagccaggtt tcttttgtgc
     2341 gttccttaga agaggatctc aaacgtcgcg acttcacagt caacgccttt gctctggatg
     2401 aagaagcaca gattgttgac atctttgatg ggatgactga cttagaaaac cgcaccctac
     2461 gggctgtagg catcccggct gagcgtttca acgaagatgc cctccgtatc atgcgaggtt
     2521 ttcgctttgc agcgaccttg gattttgaga ttgagccgac taccttcaca gctatggttg
     2581 aaaccgcacc gctcttggaa aaaatctcgg tggaacgtag ctttatcgag tttgataaac
     2641 tcttgatggc ggatttttgg cgaaaaggct tgcgtgctat gattgagtct aaggcttaca
     2701 atttcttgcc tgatttagtt ggaaaaggag aacagctggc tagaatgctg tccagtttgg
     2761 cagagaactt ccgattttca acttctgaac aggcttgggc catgctcttt gtctacctcg
     2821 gtaatgataa catcaagtcc ttcctgaaaa aatggaaaac cagcaatgat ttccaacgca
     2881 gcgtggtcaa gttggtagag atttacaagc tccgccaaga agggcctgtt accaagcaaa
     2941 tctgtttcaa gtatggcaaa gaattcttgt acttggtaga ggaactccgt caggcacaag
     3001 gtttgactat agattttgca gcaattgacc atattgatca gtctttaact atccacgaca
     3061 agcatgaaat tgttgtcaat ggaggacatt tgatgaaggc attcgacctc aaaccaggtc
     3121 caatattggg agaactactc aaagaggtgg aattccagat tgtggaagga cagctaaaaa
     3181 acgaagagca agcgattatg acatttgtga aaggaatctt agagaatgag tgattttatc
     3241 gttgaacatc tgactaaatc tgtcggagat aaaacggtct ttgctgatct gtctttcatc
     3301 atccatcaag gcgaccgtat cgggattatt ggggtcaatg gtacaggaaa gacgactttg
     3361 ttggatgttc tgtcaggtcg tatcggtttt gacggagatg tatcaccttt tcgtacaaaa
     3421 aatgcctata aaattgccta tctgactcag gaacctgatt ttgatgaaag taagacagtt
     3481 ttagacaccg ttctttcatc tgacctccgt gaaactcagc tgattcgtga atacgagttg
     3541 ctcttatctc attacgatga agccagtcaa gcaagattag agaaagtcat ggctgagatg
     3601 gattctctca atgcttggga gattgaaagc caggtcaaga ctgtcttgtc gaaactcggg
     3661 ttaacagacc taaacaaaac cgttgctgag ttatcaggtg gtctacgtag acgagtgcaa
     3721 ttggcccaag tcctccttgg caatgctgac ttgctcttgc tggatgaacc gactaaccac
     3781 ctggacattg ataccattga gtggttgacg acttttttga aaaatactaa aaagtctgtt
     3841 ctctttatta cccacgatcg ctatttcttg gacaatgtgg cgacacggat ttttgaattg
     3901 gatcgcgcca gcttgacgga gtatcaggga aattatcagg attatgttcg cttgaaggca
     3961 gagcaggacg agcgagatgc cgctcttcgc cataagaaag agcagctcta caaacaagag
     4021 ctggcttgga tgcgcagaca acctcaagct cgtgcaacca agcagcaggc tcgtatcaat
     4081 cgtttccatg acctcaaagg cgatttagcc aacaagatag acgatagcga attggaaatc
     4141 aattttgaaa cctctcgtat cggtaaaaaa gtcattaact ttgaaaatgt cagcttttcc
     4201 tatcctgata agcccatttt agcagacttt aacctgctca ttcaaaacaa ggaccgcata
     4261 ggaattatcg gtgataatgg aaaaggaaaa tccactttgc tcaatctgat tgcaggcgac
     4321 ttacaagcag acagcggtag ggtagatatt ggtgaaacca tccgtatcgg ttatttttct
     4381 cagaccatca agggcttgga cgaaagcaag cgggtcatca atttcttgca ggaagtggca
     4441 gaagaagcaa aaacgacttc tggtatggtt tctatcgcag aactcttgga gcaattcctc
     4501 ttcccacgca atacccacgg taccttgatt gaaaagttgt ctggtgggga gaagaagcga
     4561 ctttatttgc ttaagattct cttgcagcgc cccaatgttc tcttactaga tgagccgacc
     4621 aacgacttgg acatagcgac tctgacagtc ttggaacatt tcttgcaggg ctttgctggt
     4681 ccggtcatta ccgtcagtca cgaccgttat ttcttggaca aggtggctaa caaaatcttg
     4741 gcttttgaag acgacggcat tcagaccttc tttggcaact acacagacta tctggatgag
     4801 aaggtctttc tggcttccag ctctgccatt tccttggaaa aaccaaagga gaaaaccgag
     4861 aaaatcaaag agaacaagaa gcggatgtcc tactttgaga agcaggaatg ggcaaccatc
     4921 gaagaggata ttgctggctt ggaggagcgg attgcggcaa tcgaggcgga aatgctgacc
     4981 tgtggcagtg attttacaaa attgtccgat ttgcagaagg aattggatga gaaaaatgac
     5041 ctgctcttgg aaaaatatga gcggtatgag tatctgagcg agttggaggg ctagatgaaa
     5101 gttcttgtca tgtcttatat ggtcatctat cttttggtga ccttgggagc ggctttgttt
     5161 agctatctaa agaccaaaaa aatgaataca ttgcgcttgt tattaacggt cttatccatg
     5221 ctcttgctag ctgttacact ctatttttac agtcaggcct atcacgatgt acaaatggtg
     5281 gggtttgctc tgggatttac ctttatttct actctttttc tttataatgg aacgaaagag
     5341 ggtagtaatt ttactacggt catgctat
//
LOCUS       DASGAC010000141         5319 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.142, whole genome shotgun sequence.
ACCESSION   DASGAC010000141 DASGAC010000000
VERSION     DASGAC010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5319)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5319)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5319
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.142"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..4964)
                     /locus_tag="U1335_001755"
     CDS             complement(<1..4964)
                     /locus_tag="U1335_001755"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012956.1,HMM:NF037639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEM5232212.1"
                     /translation="MKSWKKVVSKWLLALLIVDSVATPVLALSETTTEGVRIRDTYIK
                     DYKEDASKLSLTIDKEQTNTEQLVVKLKAAEGEINEQGLTLVLQSGLALQQNDQGQDI
                     LPEGFYRDEAYNENDRKVAAAGSDALAAGLEQLPVYGEGYYSLKIKPSADRSITLNTD
                     PNDSSKRFEEHVFVFKKVAEVQTGEMVAMTNEHYLTILKENQLVFTNQETTEITASTE
                     MPRAPGSLTIQLRAYEENNPDPKVPLTESEFEISPVDHPEQTTKGKTDLNGNVTFENI
                     ALGTYTIKQLTSTSSYNLAEQIEAVELTESEPAKTVLVINQPKESLSRAVRRTRSVSE
                     RAAVNTTLSPSVETYGITYANIDTFGYYQFQDGYSTYGAGMDIRWKLPAEAKEGDYFT
                     LKFGNQILLNRAPMYDDNETVPYDRLDSVEDRYPDTHIGNLFFTVVTRQSATEPTGIP
                     ILNVYYTKAGELTFVVQKYANDKGPIEGDAIIGKLVDKYNLTAVTDGNGRHRGSKRIR
                     PAGNGATDSRLDWDINDLDDQIKKYDFYEGFYPNYMLMTEQAGATPTNGNPWFLGRKI
                     IYTSQYMNGTPIDLEDANGDPSKSGVYINQRTQLFETTHDFGAGAQQTSSYGRDALFP
                     VYEDRNYLYHYFVYNGNRNATGPGAWEVYLRPTGSELQIVDIKLFEGYNGQYANSPVT
                     SMVPPMATVDPNNPEAGQQVSTGKRFNPYNATEWMANWGGPEHNKTYLAIIKSKKKTP
                     SAEAADLNRLGYHMGVHSRQSVFATRQIVDYYVPTEGFGAGWVVPKEPKDLLGNFKIQ
                     KTDPNKAVVYPNYQKVGDAIQYQDDHGNTYTYNSLSKKFVDNRGQSLSQKTDNQGNLL
                     FENNLHKVFTQKKNGSTITYTDDTGIVYSKKAGEEDIYISPDGKVFRPSRPLLKDYDV
                     TIKVEGTVVTDSGGKVYPLASQNNGILEVVDRFGNLLRVQKTAGGLNAWKFDPGSGSW
                     GPAQVTSQGSGYYKISALPISTTHIRPKLTETFSFRITDTVTGLVFNHEVDEYGYAIF
                     PSLLVGHTYRLEETSARVGYTRTPKVYLLTVTATGQITITDENGAPISATTDPLSVVD
                     ASNLLYSVVNDVVRLKIKKTDEDGRLITSDKATFKVYKSGDYTNNNNTIRPNTGAVPV
                     ATIQTSKADGTATLYGESEAVVIPNIMTNVNYGIVEETAPAGYRILTTGIEVKLVQSG
                     TNYVWQLVSGGNNASLESDNLTLKVKNRADLATLVITKKIKGLESLNDLITSPVTFKL
                     TKLNDTSFNPITLRQNANTRFVFNNLSKGVYRLEETEPPTGYVKSPTPYTVIVDKGRA
                     SLYQSGQGTTTQATGLTVIKSNHFDNAPLWGDNIEGRALDGSDSTVALYKLANNRLEE
                     GQWWGVDLGEIKNVSRIRYLQGPAGGNGSDKDRMDSLALEYSVDGQNYQSLGTYNAPT
                     GGSLGEVLKDTEVMARYIRVRNLRLKTNVWLAIKEMTITTRNSITPLTDGTLAIGNIQ
                     NPKLRIEKQDTNGQVISQNVTFKLYKVDDATTVDNVTNAIQENNLIQTFNLQNGSLTT
                     AMDVKVLGKYALVETQAPTGYTGLAAPVLLELYEASQPHNDQLNKAVTRFRVLSQTDK
                     VTVDDSTTATDNTLKMVVKNVRNTFNLKLLKRDLANQNTGLNAR"
BASE COUNT         1262 a         1168 c         1165 g         1724 t
ORIGIN      
        1 aagcgggcgt tgaggccggt attttgattt gcaaggtcgc gtttcaacag cttcaaattg
       61 aaggtattcc gcacgttttt gacgaccatt ttcagggtat tgtccgttgc ggtggtgctg
      121 tcatcaaccg ttaccttgtc tgtttgacta agtactctaa agcgtgtgac ggccttattt
      181 agctggtcat tatgtggttg actggcttca taaagttcca agaggactgg agcagctagc
      241 cctgtataac ctgtcggagc ttgcgtttcc accaaagcgt atttaccaag aaccttaacg
      301 tccattgctg tcgtgagact accattttgc aggttgaagg tttgaattaa attattctct
      361 tggatagcat ttgtgacgtt atcaactgtc gttgcgtcat ccaccttata gagtttaaag
      421 gtgacatttt gtgaaatgac ttgcccattt gtatcctgct tttcaatccg taattttgga
      481 ttttggatat ttccgatagc aagtgtccca tctgtcaacg gagtgattga gtttcttgtg
      541 gtaatcgtca tttccttgat ggctaaccag acgttcgtct tgagacggag gttgcgaaca
      601 cggatataac gtgccatcac ttcggtatct ttcaatactt ctccaagaga accaccagtc
      661 ggtgcattgt aggtgcctag gctttggtag ttttgaccat cgacagaata ctctaacgca
      721 agactatcca ttctatcctt atcacttcca tttcctcctg ctggaccttg gaggtagcgg
      781 atacgggaaa cattttttat ttctcccaaa tcaactcccc accattgacc ttcctctagt
      841 cggttattgg caagtttgta gagagcaaca gttgagtcgc ttccgtccaa ggctctacct
      901 tcgatattgt ctccccagag tggcgcattg tcaaagtggt ttgacttgat gaccgttagt
      961 cccgtagctt gagtcgttgt tccttgacca gattggtaca agctagctcg tcctttgtcc
     1021 acgataacgg tatacggtgt tggggatttg acatatcctg tcggtggttc ggtctcttct
     1081 aaacgataca cgccttttga taaattgtta aacacaaatc ttgtattagc attctgcctt
     1141 aaagtgattg gattaaagct tgtatcgttt aatttggtca acttgaacgt aacaggcgaa
     1201 gtaatcaaat cgttcagact ttctagtccc ttgattttct tagtgatgac aagagtggct
     1261 aaatcagctc tgtttttcac cttgagggta agattatctg attctagact agcattgttt
     1321 ccacctgaaa ccagttgcca aacgtagttt gtaccacttt ggactaactt cacttcgata
     1381 ccagttgtca ggatacgata gcctgctggt gcagtctctt cgacaatgcc gtagttgaca
     1441 ttggtcataa tgtttggaat gacaactgct tctgactcgc cgtaaagcgt agcggttcca
     1501 tccgcttttg aggtttgaat ggtcgccact ggtacggctc cagtatttgg tcggatagtg
     1561 ttgttattgt tcgtataatc gcctgattta tagactttaa aggtggcttt atccgatgta
     1621 atgagacgac catcttcgtc tgtcttttta atcttgaggc ggacgacatc attgacaacg
     1681 gaataaagaa gattgcttgc atcaacaact gataatggat cagtcgttgc agagattggt
     1741 gctccattct catccgtaat cgtaatctgt cctgtagcag ttactgtcaa gaggtatact
     1801 tttggtgtac gggtataccc tactcgtgcc gaggtttctt caagacgata ggtatgtcct
     1861 accagcaagg atgggaagat ggcatagccg tactcgtcaa cttcatgatt gaagacaagt
     1921 cctgtcactg tgtcggtaat cctgaaacta aaggtctctg ttagttttgg acggatatgc
     1981 gttgtcgaaa ttggcagggc tgaaatctta taataaccac taccctgtga ggtgacttgt
     2041 gcaggtcccc agcttcctga tccagggtca aatttccaag cgttcaagcc tccggccgtt
     2101 ttttgaacac gtaatagatt tccaaatcgg tctacgactt caagaatacc attgttctga
     2161 ctggctagtg ggtagacctt gccgccacta tctgtcacga ctgtcccctc taccttgatg
     2221 gtgacatcgt aatctttgag gagtggtcgt gatggtctga agaccttgcc atctgggctg
     2281 atataaatat cttcctcgcc agccttttta ctatagacaa taccagtatc atctgtatag
     2341 gtgatggtgc tgccattttt cttctgggta aagactttgt ggaggttatt ttcaaagaga
     2401 agattgcctt gattgtctgt cttctgactt aaactttgtc cgcgattatc tacaaatttt
     2461 ttgcttaggc tattataggt ataggtattt ccatggtcat cctgatactg aatagcatcc
     2521 ccaacctttt ggtagttggg gtaaactact gctttatttg ggtcagtttt ctgaatcttg
     2581 aaattcccca aaaggtcttt aggctcctta gggactaccc aacctgcacc aaagccttcc
     2641 gtcggtacat agtagtcaac gatttgccgt gtagcaaaaa cactctgtct agaatgaact
     2701 cccatgtggt agcccaaacg gttgaggtca gctgcttcag ctgatggagt cttcttttta
     2761 gacttgataa ttgctaagta ggttttattg tgttctggac caccccagtt tgccatccac
     2821 tctgtcgcat tgtagggatt aaatctctta ccagtggaaa cttgctgacc tgcttcagga
     2881 ttgtttgggt ctacggtagc catcggtggc accatagagg tcactggact gttggcatat
     2941 tgaccgttgt agccttcaaa gagcttgata tcgacaatct ggagttccga acctgtaggt
     3001 cttagataga cttcccaagc acctggacca gtcgcatttc tatttccatt atatacgaag
     3061 tagtggtaca gatagttccg atcttcgtag acggggaaga gtgcatcacg accataggag
     3121 gaggtctgtt gagcacctgc tccaaagtca tgggtggttt caaaaagctg tgttcgctga
     3181 ttgatataaa caccactttt actaggatca ccattagcgt cttctaagtc aattggagtt
     3241 ccgttcatat attgggaagt gtagatgatt ttccgaccta aaaaccaagg gttaccattg
     3301 gtcggagtcg cacccgcttg ctcggtcatc agcatatagt tgggataaaa tccttcataa
     3361 aagtcatact ttttgatttg atcatccaag tcgttgatat cccagtccaa cctactatcg
     3421 gttgctccgt taccagctgg tcggatacgc ttgctaccac ggtggcgacc attaccatct
     3481 gtaacagcgg ttagattgta tttatcaact agcttaccga taatggcatc cccttcaata
     3541 ggtcctttgt cattcgcata cttctggaca acgaaggtca gctcgcctgc cttggtatag
     3601 tagacattga gaatcggaat ccctgttggt tctgtcgcac tttgtcgtgt cacaactgta
     3661 aagaagaggt tcccgatatg tgtatcagga tagcggtcct ctacactgtc tagtctatcg
     3721 tagggaactg tctcattatc atcatacata ggagcacggt tcagcaaaat ctggttccca
     3781 aacttcaaag tgaagtagtc cccttccttg gcttctgccg gtagtttcca cctgatatcc
     3841 ataccagcac cataagtaga ataaccatct tggaattgat aataaccaaa ggtatcaata
     3901 ttggcgtaag tgataccgta ggtctctaca cttggagaaa gcgtcgtatt gactgcagcc
     3961 cgttctgata cagagcgtgt gcgtcgtact gcacgtgata aactttcttt tggttggtta
     4021 atgacgagaa ctgtcttagc aggctctgat tctgttagtt ctaccgcttc tatttgttca
     4081 gcgagattat aacttgaggt agaagtgagt tgcttgatgg tgtaagtccc tagtgcgata
     4141 ttttcaaagg tcacatttcc gtttaaatcc gtcttccctt tcgtcgtttg ttcgggatgg
     4201 tccactgggg aaatttcaaa ctcactttct gtcaggggaa cctttgggtc tggattattc
     4261 tcttcatatg ctctgagctg aatggtcagg ctacctgggg ctcttggcat ctcggttgat
     4321 gcagttatct ctgtcgtttc ctgattagta aacaccaatt gattttcttt gagaatggtc
     4381 aggtaatgtt cgttggtcat tgcgaccatt tccccagtct gaacctcggc aacctttttg
     4441 aagacaaaga catgttcttc aaatcgcttg ctactgtcat ttgggtctgt atttaaggtg
     4501 atagagcggt cagcactggg tttgattttc agtgaatagt agccttcgcc ataaaccggt
     4561 aattgttcga ggccggctgc gagtgcgtcg ctacccgctg ctgcaacctt cctatcattt
     4621 tcattataag cctcatctcg gtagaaacct tcaggaagta tatcctgacc ttggtcattt
     4681 tgttgcaaag ccagaccgct ttgtagcacc aaggtcaatc cttgctcgtt gatttctcct
     4741 tctgcagctt tgagtttgac aaccagctgc tcggtgtttg tttgttcctt atcaatggta
     4801 agtgatagct tggaagcatc ctctttataa tcctttatgt aagtgtcgcg tatccgtact
     4861 ccttctgtag tcgtttctga taaggcaagg actggcgttg ccacagaatc tactattaac
     4921 aaggcgagta gccatttact cactaccttt ttccacgatt tcatttcttt ttcctctcct
     4981 atgcttagcc acttgctgaa tccattgtgg ctatacaact acaatggtga acagtctaac
     5041 gtttcacact tctattgact tttatatcct aaatgacaaa aaaatagtat caagctttac
     5101 aagcccttgc tcgactactt tgtctccctt tttaaaactg atttcgttca agatgtagtg
     5161 ataaactttc tttgtgctga aatgatggtt gcggtttcat tctttcactc aaaaaaagtt
     5221 tctctttact tctatggggg cctgtttccg acaattgcga cttccttgct cacatgggaa
     5281 caaggtgcag aaaccatttt tacatcgtga cgattttaa
//
LOCUS       DASGAC010000142         5251 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.143, whole genome shotgun sequence.
ACCESSION   DASGAC010000142 DASGAC010000000
VERSION     DASGAC010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5251
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.143"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..861)
                     /locus_tag="U1335_001756"
     CDS             complement(<1..861)
                     /locus_tag="U1335_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
                     /protein_id="HEM5232213.1"
                     /translation="MLELKNENLTVQFSELGGQIISIKDKDGIEYLWQGDPTYWSGQA
                     PVLFPICGSLRNDWAIYEPAERPTFTGTIPRHGLVRKMLFKNVKSTEKSLEFSISSNE
                     ETVKNYPFEFELSINYSLLGNTIRTEYRVKNLEGHRKLPYFIGGHPGFNCPLLDGESY
                     EDYYLEFEKVESCTVPKSFPETGLLDLRDRRPFLENQKTLDLSYKLFEHDAITLDQLA
                     SRKVTLKSKNHQKKLSIAFDDFPYLVIWSTTNKSPFIALEPWSGLSTSLEESDIFNAK
                     RSISYVAPKEV"
     gene            complement(926..2332)
                     /gene="lacG"
                     /locus_tag="U1335_001757"
     CDS             complement(926..2332)
                     /gene="lacG"
                     /locus_tag="U1335_001757"
                     /EC_number="3.2.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003060941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-galactosidase"
                     /protein_id="HEM5232214.1"
                     /translation="MVKTLPKDFIFGGATAAYQAEGATQTDGKGRVAWDKYLEDNYWY
                     TAEPASDFYNRYPVDLELSEQFGVNGIRISIAWSRIFPTGFGEVNPKGVEYYHKLFAE
                     CHKRHVEPFVTLHHFDTPETLHSNGDFLNRENIEHFVNYAAFCFKEFPEVNYWTTFNE
                     IGPIGDGQYLVGKFPPGIQYDLAKVFQSHHNMMVSHAKAVKLYKDAGYSGEIGVVHAL
                     PTKYPYDPTNPDDVRAAELEDIIHNKFILDATYLGYYSEKTLEGVRHILKVNGGELDL
                     RDEDFAALDAAKDLNDFLGINYYMSDWMRAHDGETEIIHNGKGEKGSSKYQIKGVGRR
                     ESPVDIPKTDWDWIIYPKGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDGTVYDD
                     GRIDYVKKHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERY
                     PKKSAYWYKKVAETQVIE"
     gene            complement(2567..4246)
                     /locus_tag="U1335_001758"
     CDS             complement(2567..4246)
                     /locus_tag="U1335_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003048452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose transporter subunit IIBC"
                     /protein_id="HEM5232215.1"
                     /translation="MNKLIEFIEKGKPFFEKISRNPYLRAIRDGFIAAMPVILFSSIF
                     LLVAFVPNIFGFIWSDEAVAAIMKPYGYTMGIVAVLVAGTTAKSLTDAFNRQLPKTNQ
                     INFISTMIASISGFLLLASDGIEGGFANGYMGTKGLLTAFLAAFITVNIYKVCVKNNV
                     TIRMPDEVPPNVSQAFKDVIPYALSIFVLYGIDLVTRQFLGTNVAEAILKLFEPLFTA
                     ADGYVGITIIFGAYALFWFVGIHGPSIVEPAIAAITYANIETNFQLLQAGQHADKILT
                     SGTQMFIVTMGGTGATLVVPFMFMWLTKSKRNKAIGRASVVPTFFGVNEPILFGAPLV
                     LNPVFFVPFILAPIANVWIFKFFVDTLKMNSFSVNLPWTTPGPLGIVMGTNFAPLAFA
                     LAILLVVVDVLIYYPFLKVYDEQILAEEQSGKVENSLKEKVAANFNTAKADAILEKAA
                     VETEISEQTNVLVLCAGGGTSGLLANALTKAAKEYGVPVTATAGSYGAHREILPEYQL
                     VILAPQVASNYDDIKQETDALGIKLAKTEGAQYIKLTRDGQGALDFVKQQF"
     gene            complement(4246..4563)
                     /locus_tag="U1335_001759"
     CDS             complement(4246..4563)
                     /locus_tag="U1335_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009730102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM5232216.1"
                     /translation="MNREEITLLGFEIVAFAGDARSRLMEALAAAQKGDYAKAEELVE
                     AANACIVEAHHAQTSLLQKEAAGEDLAFSVTLMHGQDHLMTTLLLKDMMSHMIELYKR
                     GDK"
     gene            complement(4595..>5251)
                     /locus_tag="U1335_001760"
     CDS             complement(4595..>5251)
                     /locus_tag="U1335_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017770255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HEM5232217.1"
                     /translation="FLTLLKDIPLDFISATYTVINHLVETYHYPVQEYLYVTLTDHIY
                     CAYQAVLKNAYQESKLPNISAEYPLEYKMAREALAMLREKLLKDFPNDEIGKIALHLI
                     NAKGETIHPTSEEHDISKKIIAEVEQILIDNGIRRSKENSNFYDRFMIHLSYFLNYLD
                     RSHQSNESIASLEQYIKLQNPRAHQVGSQIFEMITSLVDEPVNDSERFYIVLHIQRLL
                     "
BASE COUNT         1607 a         1088 c          932 g         1624 t
ORIGIN      
        1 aacctctttt ggagcaacat aactaatact tcgtttggca ttgaaaatat cagattcttc
       61 caatgaagta gagagtccgc tccatggttc taatgcgata aagggactct tatttgtagt
      121 tgaccaaatc actaaatacg gaaaatcatc aaatgcaatc gaaagtttct tctgatgatt
      181 ttttgatttc aaggttacct ttcgtgatgc taattgatcc aatgtgatgg catcatgctc
      241 aaacagctta taggacaagt ccaaggtctt ttgattttcc aagaatggcc ggcggtctcg
      301 cagatcaagt aagccagttt ctggaaaact tttaggtact gtacaagatt ctactttttc
      361 aaattctaaa taatagtctt cataactctc accatccaac aagggacaat taaaacctgg
      421 gtgaccccca ataaagtaag gtagctttct atgtccctca aggtttttca cccgatattc
      481 agttcgaatt gtattgccaa gtagtgagta gttaatggaa agttcaaatt caaatgggta
      541 attttttacg gtttcttcat ttgatgaaat agaaaattcc aaagattttt cagtactttt
      601 tacatttttg aacagcattt ttctcacaag gccatgcctt ggaattgtgc ctgtaaatgt
      661 cggcctttct gcaggttcat agatagccca atcatttcgt aaacttccac aaatcggaaa
      721 tagaactggt gcttgaccgc tccaataggt cggatcgcct tgccaaagat actcgatacc
      781 atccttgtct ttaatagaaa taatttgccc acctaattca gaaaattgta ctgttaagtt
      841 ctcatttttt aattcgagca taaaaactgc ctcccttata tgaaaacaag gatgctaact
      901 tgagctaggc atccttgtat tagttttatt caataacctg tgtttctgct acttttttat
      961 accaataagc acttttcttt ggataacgtt cttgggtctc aaagtcaaca tagaacaatc
     1021 catatcgttt ttcgtatcca tttgaccaag aaaatacatc catcaaggac cagatgaaat
     1081 aacctttaac attggcacca tctgagatag catctgaaat cacttctaaa tgctttttca
     1141 cataatcaat tcgaccatcg tcatagactg taccatctac aaattcatct ttatagccta
     1201 gaccattttc agtgatgtag attttcttat agtttggata gtcatttttt acacgcatga
     1261 tttgatcata aaggcctttc ggatagataa tccaatccca gtccgttttt ggaatatcaa
     1321 ctggagattc tctacgacca actcccttga tttgatactt agaacttccc ttttcacctt
     1381 taccattatg gataatttca gtctcaccgt catgagccct catccaatca ctcatatagt
     1441 aattgatgcc caagaagtcg ttcaaatctt ttgcggcatc taaggcagcg aagtcttcat
     1501 cacgaaggtc taattctcca ccattcactt tcagaatatg tcgaacgcct tcaagagttt
     1561 tttcagaata gtaacccaaa tatgtagcat cgaggataaa tttattatga ataatatctt
     1621 ctagttccgc tgcacgaaca tcgtcaggat tggttggatc ataaggatat ttcgttggca
     1681 atgcgtgtac aacaccaatt tctccactat aaccagcatc cttgtagagc ttaactgcct
     1741 tggcatgtga aaccatcata ttgtggtgag attggaatac cttagctaag tcatactgaa
     1801 tccctggtgg gaacttccca actagatatt gcccatcacc aattggaccg atttcattaa
     1861 aggttgtcca gtaattaact tcggggaatt ctttgaagca aaacgctgcg taattgacga
     1921 agtgttcaat gttttcacga tttagaaagt caccattaga atgtagcgtt tctggtgtat
     1981 caaaatggtg aagcgttaca aatggttcta cgtgacgttt atggcattcc gcaaataatt
     2041 tatggtaata ctctactccc tttggattca cttctccaaa gcctgttggg aagatacgag
     2101 accacgcaat cgaaatacga ataccgttta ccccaaattg ttcacttagt tctaaatcaa
     2161 ctggataacg attataaaaa tcagaagctg gttccgcagt gtaccagtaa ttatcttcta
     2221 gatacttgtc ccacgcaaca cgaccttttc catccgtctg tgtagcaccc tccgcctgat
     2281 atgcagcagt tgctccacca aatataaaat ctttcggtaa tgttttaacc atatgcctac
     2341 cttcttctat caaaaataaa taaaggggta ggagttggag atgataactc cctccccttt
     2401 tgattaagaa cctgtattca caagtgaagt gcttgtatat aagagatagt ttttcgctga
     2461 tcaaggcagt tttttgaggg aatactgact gtattttgaa aaaaactaac gatgagtagc
     2521 tgaaaaacta gccttagatg gaagtgctga actgtgaata caggttctag aactgttgtt
     2581 tgacaaaatc aagagcacct tgaccatctc gtgtgagttt aatgtattga gccccttcag
     2641 ttttggcaag tttaatgcct aacgcatcgg tttcttgttt tatatcatca tagttcgatg
     2701 ctacttgagg tgcaaggatg actaattgat actctggcaa aatctcacgg tgtgccccat
     2761 agcttcctgc tgtagctgta actggaacac catattcttt tgcggcttta gttagagcgt
     2821 tggcaagcaa tccgcttgta ccaccccctg cacaaagtac caaaacattg gtttgttcag
     2881 aaatttcggt ttcgactgca gctttttcaa gaatagcatc cgctttggca gtattaaagt
     2941 tagccgccac tttctctttc aagctatttt caactttccc tgattgttct tcagcaagaa
     3001 tttgctcatc gtaaactttc aagaatggat aatagataag tacatcgaca actaccaaca
     3061 agatagctag tgcaaaggca agtggagcaa agtttgttcc cattacaatc cccaatggtc
     3121 ccggagttgt ccatggcaag ttaacgctga aactgttcat ttttaacgta tcaacaaaga
     3181 atttgaaaat ccatacgtta gcaattggag ctaagatgaa tggaacaaag aatactgggt
     3241 tgagtacaag tggtgcaccg aacaagatgg gttcatttac accaaagaaa gttggaacaa
     3301 ctgaagcacg tccaattgct ttatttcgtt tagacttagt caaccacata aacatgaatg
     3361 gcacaaccaa ggtagcacct gtaccaccca ttgtcacgat aaacatttga gtacctgaag
     3421 tcaggatttt gtccgcatgt tgacccgcct gtagaagctg gaagttggtt tcaatattgg
     3481 cataagtaat ggctgcaatt gctggttcca caatagatgg gccatgaatc cctacaaacc
     3541 agaacaaagc ataggcacca aagataattg taataccaac ataaccatct gcggctgtaa
     3601 acagaggctc aaataatttc agaatcgcct cagccacgtt tgttccaagg aattgacgtg
     3661 tcacaagatc aattccatac aagacaaaga tagacaatgc atatggaatc acatctttaa
     3721 atgcctggga tacgttcggt ggaacttcgt ctggcatacg aatggtgaca ttgtttttca
     3781 cacagacctt atagatatta accgtaatga aggctgctag aaaggctgtc aaaagcccct
     3841 tagttcccat gtaaccattg gcaaatccac cttcaatacc atcagaagcc agtaatagga
     3901 aacctgaaat tgaggcaatc atggttgaaa tgaagttaat ctgattggtt tttggcaatt
     3961 gacggttaaa cgcatctgtc aatgattttg cggtcgttcc tgcaactaag acagctacaa
     4021 tacccattgt ataaccgtaa ggtttcatga tagccgcaac tgcttcatca gaccaaataa
     4081 atccaaagat attaggcacg aaagccacca ataggaagat acttgagaac aagataaccg
     4141 gcatggcagc aataaaacca tcacggatag cccttaaata agggtttctc gaaatctttt
     4201 caaagaaagg cttccctttc tcaatgaatt caatcaattt attcattact tatcacctcg
     4261 tttataaagt tcaatcatat gactcatcat atctttcaat aacaatgtcg tcatgagatg
     4321 gtcttggcca tgcatgagcg tcacactaaa ggctaaatcc tcaccagctg cttctttctg
     4381 caacaaactt gtctgagcat ggtgggcttc aacaatacaa gcattggcag cttcaactag
     4441 ttcttctgct tttgcgtaat cacctttttg agcagcagcc agtgcctcca tcaaacgaga
     4501 tcgagcatca ccagcgaatg caacaatctc aaaacctaat aacgtaattt cttctctgtt
     4561 cataatatga acctcctttt aaaattgaat tgatttacaa taatcgttga atatgtagta
     4621 caatatagaa cctttcacta tcatttactg gctcatcaac caatgatgta atcatctcaa
     4681 aaatctgact tccaacctga tgggctcttg gattctggag cttaatgtac tgttccaaac
     4741 tagcaatcga ttcatttgac tgatgggatc tatctaagta attcagaaaa taggacaaat
     4801 gaatcataaa gcgatcataa aaattgctat tttcttttga gcgtctaatc ccattatcta
     4861 tcaaaatttg ttcaacctca gcaataattt tcttactgat gtcatgttct tcacttgtgg
     4921 gatgaattgt ttcacctttt gcattgatta agtgaagtgc aattttacca atctcatcat
     4981 ttggaaaatc ttttagcaat ttttctcgaa gcatagctaa ggcttcgcgc gccattttat
     5041 attccaatgg atattcggct gaaatattgg gtagcttact ttcttggtaa gcattcttta
     5101 aaaccgcctg atatgcacaa tagatatgat ctgtcaatgt cacatataga tattcttgta
     5161 cagggtaatg ataagtttct accagatgat taatcaccgt gtaggttgcc gaaataaaat
     5221 ctaagggtat atcttttaat aaggttagaa a
//
LOCUS       DASGAC010000143         5168 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.144, whole genome shotgun sequence.
ACCESSION   DASGAC010000143 DASGAC010000000
VERSION     DASGAC010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5168)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5168)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5168
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.144"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            63..758
                     /locus_tag="U1335_001761"
     CDS             63..758
                     /locus_tag="U1335_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall-active antibiotics response protein"
                     /protein_id="HEM5232218.1"
                     /translation="MRKVQFFLLIESMIFTMAAFDVVANEASRTLLLFSALLLVIWYF
                     LGRKVNSVLLVSSLSLLFLVFVLNPFFIIGIMLLVVYMLINFFSRYEKRNQYTHIIFS
                     DYSLQVQKEKNRWFGNHDHSQDRFGFEDINIVRLFGNDVVDLDKTVLVGRDNIVVIRK
                     TFGRTKIIVPIDVEVALSATSIYGRVSFLGESYWDLRNESIAVNSPDYQESHKRVKVV
                     TNNILGDVEVVRV"
     gene            755..1771
                     /locus_tag="U1335_001762"
     CDS             755..1771
                     /locus_tag="U1335_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM5232219.1"
                     /translation="MRKRTYLLLAWFACLIVFVVIASTLPLLNYSLLDVTLWISTEQL
                     VFTLILLVIVLTLFLAVMVQTVSLASTQVMRTKLQAILKNKSIRTDTESDQLLLQLSD
                     KVRNLTRQVQLVDNQDLVKKEEIVEGERKRIARDLHDTVSQELFATSMILSGLSSNLS
                     TLPQETLQEQLMLVKDMIESAQRDLRILLLHLRPSELESKTLVEGFELILREVSDKSN
                     IIVHFQHEVEELPKLIEEHLFRIAQEIISNTLRHAKAKHLDVYLLQKETELQLKMTDD
                     GIGFQQGADDELSYGLQNIRERVEDMAGTIKIRTAPNKGVAIDIRIPLLKGKEDEYDS
                     SDVG"
     gene            1743..2384
                     /locus_tag="U1335_001763"
     CDS             1743..2384
                     /locus_tag="U1335_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016480307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM5232220.1"
                     /translation="MNTIRVMLVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAK
                     ALEVKPDVVVMDLVMPKMTGVEATLALLKEWPQAQIVILTSYLDNEKIYPVLEAGARG
                     YMLKTSSADEILAAIRKVALGEYAIETEVEKKVEHHKRHPALHDDLTAREREILTLLA
                     KGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGLVAQEDQ"
     gene            2434..3834
                     /locus_tag="U1335_001764"
     CDS             2434..3834
                     /locus_tag="U1335_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM5232221.1"
                     /translation="MDAKLRYKAKKIKIVFFDIDDTLRVKNTGYIPESIQQVFKSLKE
                     KGILTGIASGRTPYGLVPEIKALKPDFFVMINGSYVEDAKGQVVYHQPMPQNLVESVL
                     NWAKEIGIEYGMLGSQKGTLSARTDRISQVIDLIYEGLETNPTFYKENDIYQLLTFEK
                     DGHEVELPEELQAELRSVRWDAISSDIVLKGSSKATGVAKVVEKLGLKPENVLVFGDG
                     LNDIELFDYAGISVAMGHSHPELQKHADYITKKVEEDGIFDALEKLGMVEKEKYFPQL
                     DLENVTGPVAHIKTNHGKLTVKLFPEIAPKTVANFVALSKDGYYDGIIFHRIIKDFMI
                     QGGDPTGTGMGGESIYGTAFEDEFSMEAFNLRGALSMANAGPNTNGSQFFIVQNQNFP
                     YNAKELERGGWPKEVAEAYVKNGGTPHLDQRHTVFGHLVDEESFVVLDAIAAVATDSA
                     DRPHEDVVIETIEIED"
     gene            3836..4207
                     /locus_tag="U1335_001765"
     CDS             3836..4207
                     /locus_tag="U1335_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HEM5232222.1"
                     /translation="MKIGDKLKGTVTGIQPYGAFVQLENGTTGLIHISEIKTGFVDNI
                     YDHLKLGQEVLVQVVDFDEYTEKASLSIRTLEEEQQKIPRHHRFTNERNKIGFSPLAK
                     QLPKWIEEAKGYLKEHKEKKV"
     gene            complement(4233..5159)
                     /gene="cysK"
                     /locus_tag="U1335_001766"
     CDS             complement(4233..5159)
                     /gene="cysK"
                     /locus_tag="U1335_001766"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HEM5232223.1"
                     /translation="MAIYQNITQLVGKTPIIKLNNIVPEGSADVYVKLEAFNPGSSVK
                     DRIALAMIEDAEKAGTIKPGDTIVEPTSGNTGIGLAWVGAAKGYKVIIVMPETMSVER
                     RKIIQAYGAELVLTPGSEGMKGAIAKAKEIAEEKNGWVPFQFANPSNPKVHEDTTGQE
                     ILEDFGTTGLDAFVSGVGTGGTVSGISHVLKTANPDIAIYAVEADESAVLSGEAPGPH
                     KIQGISAGFIPDTLDTSAYDGIIRVKSDDALATGRAIGGKEGFLVGISSGAAIHAAIE
                     VAKELGTGKKVLAILPDNGERYLSTALYEFND"
BASE COUNT         1605 a          978 c         1112 g         1473 t
ORIGIN      
        1 ctactttgga tggagttctt ttacttattt tttgttacaa tagtatagaa aggatggaga
       61 agatgcggaa agttcaattt tttctactaa tagaaagtat gatttttacg atggcagcct
      121 ttgacgtggt agccaatgag gccagtcgga ccctgctact tttctctgcc ttattactcg
      181 tcatttggta cttcctagga agaaaagtta atagtgtttt actggtcagc tccttatctc
      241 tattattttt ggtctttgtt ttaaatccct tcttcattat tgggattatg ctgctagtcg
      301 tgtacatgct gattaatttc ttttcacgtt atgaaaagag aaaccaatat acccatatta
      361 ttttcagtga ctattctcta caggttcaaa aagagaaaaa tagatggttt ggcaaccacg
      421 accactctca agataggttt ggttttgaag atattaacat tgtacgcttg tttggcaatg
      481 atgtagttga tttggataag actgtattag ttggcagaga taatattgtt gtaattcgta
      541 aaacgtttgg acggacaaaa attattgttc caattgatgt tgaggttgca ctttcagcaa
      601 ctagtatcta tggacgagta agtttcctgg gggaatcata ctgggatttg cggaatgaaa
      661 gtatagcggt caatagtccc gattatcaag aatcacacaa acgtgtaaaa gtcgttacca
      721 acaatatact gggagatgtg gaggtggttc gcgtatgaga aaacgtacct acctactact
      781 cgcctggttt gcctgtctca ttgtttttgt ggtgattgct tccaccctcc cacttttaaa
      841 ttattcattg ctagatgtta cgctctggat ttcaacggag cagctcgtgt ttactctcat
      901 tctactagtt atcgttttaa ccctttttct agctgtaatg gtacaaactg tcagcctagc
      961 ctccactcag gttatgcgga cgaagttaca agctatcttg aagaataaaa gtattcgaac
     1021 agataccgaa agtgatcagc tcttgctcca gttgtctgat aaggtcagaa acctcacgcg
     1081 tcaggtgcag ctggttgaca atcaagattt agtcaagaaa gaagagattg ttgagggaga
     1141 acggaaacgg attgccaggg atttgcatga tacggttagt caagagttat ttgcaacgag
     1201 catgatttta tcaggattat cgtccaatct atccactctt cctcaggaaa ctttgcagga
     1261 acagctgatg ctcgtgaaag acatgattga gtctgcccaa agagacctac gcatcctatt
     1321 attacatcta cgcccaagtg aacttgaaag taaaaccttg gttgaaggat ttgagctgat
     1381 tttgcgtgaa gttagcgaca aaagtaatat tatcgttcat ttccaacatg aagtagagga
     1441 gttaccgaaa ctaattgaag aacatctctt ccgcattgcg caagaaatta tcagtaatac
     1501 cttgcgacat gccaaagcca agcatttgga tgtttacctc ttgcagaagg aaacagaact
     1561 gcagttgaaa atgacagacg atgggatcgg cttccaacaa ggtgcagatg atgaattaag
     1621 ttacggtctt caaaatatac gtgagcgggt tgaagacatg gctggaacga taaaaattcg
     1681 cacagctcca aataagggag tggcgattga tattcgtatc ccactattga aaggaaaaga
     1741 agatgaatac gattcgagtg atgttggttg acgaccatga gatggttcgt ctaggattga
     1801 aaagttactt aaatttacag ccagatgttg aagtagttgc agaagctagt gatggtgagg
     1861 aaggtttggc taaagcgtta gaggttaaac ctgatgttgt agtgatggac ttagttatgc
     1921 ccaagatgac tggcgtagaa gcaaccctgg ccttgctgaa ggaatggccg caagcgcaga
     1981 ttgtcatcct gacctcctac ctagataatg agaaaatcta tcctgtgctg gaagcaggag
     2041 ctcgtggcta tatgttgaaa acgtcaagtg ctgacgaaat cttagcagcc atccgcaagg
     2101 tagctcttgg agaatatgct attgagacag aagtagagaa aaaagtagag caccataaac
     2161 gccacccagc tttacatgat gacttgacag ctcgtgaacg cgaaatcttg acgctgttag
     2221 ccaagggata tgataatcaa cgaattgcag atgagtcctt catttcccta aaaactgtta
     2281 agacccatgt ttccaatatc ttatccaaac tagctgttag cgatcgtact caagcagttg
     2341 tttatgcttt ccagcatggt ttggtggcgc aagaggacca atagtggtat aatgaaaatt
     2401 agttaatttt caaccaaagg atagtggaat tatatggatg caaaactcag atataaggca
     2461 aaaaaaataa aaatagtctt ttttgacatt gacgacacgc tacgtgtaaa gaatacaggc
     2521 tacattcctg aatcaattca gcaggttttc aaatcactga aagaaaaggg aattttgaca
     2581 ggaattgcgt caggacgaac tccttatggt ttggtgccag aaatcaaggc cttaaagcca
     2641 gacttttttg ttatgattaa cggctcctac gtagaagatg ccaaaggtca ggtagtgtac
     2701 catcagccga tgccccaaaa tttagtagaa tctgtattaa attgggctaa agaaattgga
     2761 atcgaatatg gtatgcttgg tagtcaaaaa gggacacttt ctgcacgaac tgaccgcatc
     2821 agtcaagtaa ttgacttgat ttatgaaggt ttggaaacaa acccaacttt ttataaagaa
     2881 aatgacatct atcaattgct aactttcgag aaagatggtc acgaagtaga acttccagaa
     2941 gagttgcaag cggaattgcg tagtgttcgt tgggatgcta tttcatcgga cattgtgcta
     3001 aaaggctctt ccaaagcaac tggtgttgct aaggttgttg aaaaactagg cctgaaacct
     3061 gaaaatgtcc tagtgttcgg agatggactc aacgatattg agttattcga ttatgcagga
     3121 attagtgtcg ctatggggca ttcgcatcca gaactgcaaa agcatgcaga ttatatcaca
     3181 aaaaaagtag aagaagatgg catttttgat gccttggaga aattaggtat ggtagaaaaa
     3241 gaaaaatatt tcccgcaatt agatttggaa aatgttacag gaccagttgc gcatatcaag
     3301 actaaccatg gtaagttaac agtaaaactc tttcctgaaa ttgcacccaa aactgtagca
     3361 aatttcgtag ctctttctaa agatggctat tatgacggaa ttatcttcca tcgtattatc
     3421 aaagacttta tgattcaagg tggcgatcca accggaacag gtatgggtgg tgaatctatt
     3481 tatggtactg cgtttgaaga tgaattttca atggaagctt ttaatctcag aggagccttg
     3541 tcaatggcca atgcaggacc aaatacaaat ggaagccaat tctttatcgt tcaaaaccaa
     3601 aacttcccat acaatgcgaa agaattagaa cgaggcggtt ggcctaaaga agttgcagaa
     3661 gcctatgtca aaaatggcgg gacaccacat ctagaccaac gccacacagt gtttggtcat
     3721 ctagttgatg aagaatcctt cgtcgtcttg gatgctatcg cagcggttgc aacagattca
     3781 gcagatcgtc cacatgaaga tgttgtaatt gagaccatcg aaatagagga ttaagatgaa
     3841 aatcggagat aaactcaagg ggacggtaac gggtattcaa ccgtatgggg cctttgtaca
     3901 attagagaat gggacgacgg gcctaatcca tatctcggaa atcaaaacag gttttgttga
     3961 taatatttat gatcatttaa aattggggca agaggttttg gtacaggtag tcgactttga
     4021 tgaatatact gaaaaggcta gtttatcaat ccggacctta gaagaagaac aacaaaaaat
     4081 tccgcgtcat catcgtttta caaatgaacg gaataaaatt ggtttttccc ctttagcaaa
     4141 acaacttccg aaatggattg aggaagctaa aggctatctc aaagaacaca aagaaaagaa
     4201 ggtataggat gcattcctaa ccttctttct ttttaatcat tgaactcata aagagctgtt
     4261 gacaagtaac gctcaccgtt atcaggcaag attgccaaca ctttttttcc agttcccaac
     4321 tctttagcga cttcgatagc agcgtgaatt gctgcacctg aagaaatacc aactaagaat
     4381 ccttcttttc caccgatagc acgacctgta gctaaggcat catcggattt gacacgaata
     4441 atgccatcat aggcgctagt gtccaaagta tctggaataa aacctgccga aatgccttga
     4501 atcttgtgcg gaccgggtgc ttcaccagat aagacagctg attcatcagc ttccacagca
     4561 tagatagcaa tatctggatt tgctgtcttc aaaacatgcg aaatacctga aacggtacca
     4621 ccagtaccaa cgccagatac aaaagcatct aaaccagttg ttccaaagtc ttccaaaatt
     4681 tcctgtcctg ttgtatcttc gtgaactttt ggattggatg gattagcaaa ctggaaagga
     4741 acccagccat ttttttcttc agcaatctct tttgctttgg cgatagcccc cttcatccct
     4801 tcgctaccag gagtcaagac aagttcagct ccataagctt ggataatctt acgacgctca
     4861 acactcatgg tttcaggcat gacgataatc accttataac cttttgctgc tccaacccaa
     4921 gcaagaccga taccagtgtt accacttgtt ggctcaacaa tagtatctcc aggtttgatt
     4981 gtaccagctt tttcagcatc ttcaatcata gccaaggcga tacggtcttt tacagaagat
     5041 cctgggttaa aggcttctaa cttaacatag acatccgcag atccctcagg aacaatatta
     5101 tttagcttga taattggtgt ttttccaact aattgagtaa tgttttgata aatagccata
     5161 tggcacct
//
LOCUS       DASGAC010000144         5138 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.145, whole genome shotgun sequence.
ACCESSION   DASGAC010000144 DASGAC010000000
VERSION     DASGAC010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5138)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5138)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5138
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.145"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            124..915
                     /locus_tag="U1335_001767"
     CDS             124..915
                     /locus_tag="U1335_001767"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232224.1"
                     /translation="MKRATFDDYLTFDDDGSIREGELLSQTETVIVDEETLEEKLNDL
                     SLKKLVIEVISNQTIIRNKVEDLLDLQEQNSIASNRSEPVESLRLAQNEQLSDIEQKL
                     SQLLGSAINTQQNFAKLLRIQEINSKLHDELSMYKSGLFEEIKLPIFRSIWRVRKNIV
                     EELNSYKQKEGDENQIFVQVLEDVVEDIDELLENNQLRIFTSAIGEVFNSVFSKKYNE
                     VDTSHRELHLKVARVRDSGLEKDGIVIEKQVVDVYKYVETVSEVK"
     gene            916..2601
                     /locus_tag="U1335_001768"
     CDS             916..2601
                     /locus_tag="U1335_001768"
                     /inference="COORDINATES: protein motif:HMM:NF012242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEM5232225.1"
                     /translation="MEKIVFGIDLGTTYSAVSYVDSFDKPVIMKNRNGKDITPSAIYF
                     SEDGNIVVGQAAKEEADMDPAGYVEFFKRYMGTPFDELPDSVKKKFTIGTKQYRPEEL
                     SSLVLKELKRSVDESSLGVKMEQVVITVPAYFNEAQRMATKTAGELAGLQVLEIIKEP
                     LAAAFDYTQSSGDDNKTFLIYDLGGGTFDATVMSISEQEVIEVASEGDSQLGGKDWDQ
                     RIFELLHEKFLEEHPDYVFSLGDEKQLLLKSEEIKVKLTNSETTKAKLNFDGEKAQPV
                     ITRQDFEDMTVDLLERTLEITDSLIEIARGKGFNIDAILLVGGSTRMPMIKKALQSKY
                     GLEPKTHDPDQAVAKGAAIWAVFAYIKGQKIVEQLSSGELQENNLTKEQQEVLRNRDS
                     FSDRLNTSVASFGNLNDKEIVTAATKTYGVKLFYGDELKIQNIIIKNSPLVGGCISGT
                     IGAGTRYESQSEVLIEIIESDEMQDIVDYKEYMAEQMIGELLLTMPVGLPIGSPIEVT
                     LTLNDQGLINAYAKELTGGRDASAEIQIKGLMTGAEIEEAIEHINTMNIVDEI"
     gene            2625..4664
                     /locus_tag="U1335_001769"
     CDS             2625..4664
                     /locus_tag="U1335_001769"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012242.1,HMM:NF012321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEM5232226.1"
                     /translation="MKSEVVGIDLGTTYSVVAKLDSETGEVRVLKNSQGSYTTPSIIA
                     FDGEQILFGEEAKEELLFGGEAASFYKRELANEAYHIKLGEKSYNACELSSLFLEYLV
                     KDIEETHGFAIDAAVISVPAYFTHVEVQATMKAANLAGIKVLGVIHEPTAAALAYGIE
                     SSNESKTILFYDLGGGTFDVTVIRITGEEFTVLGSSGDSQLGGKDFDQRLKDYFLDEV
                     KYYLDETENNSVIQSVLGIEKIKKRLSEFNEVPVPITIAGKKEEVILFRSEFESLSED
                     LVDRTVEISESLLNDLHLTWSTIDKIILVGGSVKMPMIRNCFVSKLGRVVENGVNVDE
                     AVAIGAAIRANMLSKEKQNSIIGTKKLQNFIQFTDVTSHGLGMIALNENRDKYINSII
                     VPKNSTIPVSIRKRYVFKPTNQSSEMEIFVLQGEDSRVAFNTFVNKYIVNGFDPSEFE
                     RTVEVTVTYSYNTDGLIEVFAHTDGKKLTVITDNRDRDISWAYELPKDGMNYKQICIA
                     IDTSGSMVGYPIHEAKAATLQFIDQMGSNVYIGLISVADTASCICPLTRDRERLSRAL
                     ERLITHSCPDGGGNLGHPFELASELMEEGLLIVLADGIWKHQHNAIEAANRIKYRIDI
                     VGIGFGSADEEFLREISSIEGIGGMTDLENLSKSFSNVAQVISEGSPSLGIKALD"
     gene            4674..>5138
                     /locus_tag="U1335_001770"
     CDS             4674..>5138
                     /locus_tag="U1335_001770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232227.1"
                     /translation="METIGNICQLIDFYRCFNIGYVVDRNRALSKCTSLPLQKGTIVL
                     REFIKHATDSQFIALVGNVYNEVFHNLELALIQASNSATQTLSRSDVDKLVSQHFTGQ
                     VSQEVLQKVTTQLHIQIDGREKSQSVLEAEREEKIRKADSILKEYKVPQFQKR"
BASE COUNT         1739 a          706 c         1190 g         1503 t
ORIGIN      
        1 ctaatattac cagttgagaa accttttatt tttgatttct tcaatcaatc gtttggtata
       61 tttcctaagg agtttctgat gtagcttaaa tatttaagta tattcatttt aggaggaaaa
      121 gtaatgaaaa gagcaacatt tgatgattat ctcacatttg atgatgacgg tagtattaga
      181 gagggagaac tattgtcaca aactgaaaca gttatcgtag atgaggagac tttggaagaa
      241 aagctaaatg atttatcgtt aaaaaaacta gtgattgaag tgatttcgaa tcaaacaatc
      301 attagaaata aagttgaaga cttacttgat ttacaagaac agaacagtat tgcttcaaat
      361 aggtcggaac cagtagaatc tctgagactt gcgcaaaatg agcaactatc cgacatagaa
      421 caaaaattat cccagttgct tggttcagcc ataaacactc aacaaaattt tgctaaatta
      481 ctaagaatac aagagataaa ctcaaagctt catgatgaac tctcaatgta taagtctggt
      541 ttgtttgagg aaataaaatt accaatcttt cgctccattt ggagagtaag aaaaaatata
      601 gtagaggaat tgaatagcta caagcaaaaa gaaggggatg aaaatcaaat ttttgtgcag
      661 gttcttgaag atgtcgtaga agatattgat gagttgctag aaaataatca actgcgtata
      721 tttacaagtg ctattggaga ggtatttaat agtgtattct ctaaaaaata taatgaagtt
      781 gatacttctc atagagagct gcacttgaaa gtggcaaggg ttcgagactc tggtctggag
      841 aaagacggta tcgtcattga aaaacaagta gttgatgtat ataaatacgt tgaaactgta
      901 tccgaggtga agtaaatgga aaagattgtt tttggaattg atttaggtac aacttattct
      961 gccgtttctt atgtagattc ttttgataaa ccagtcataa tgaaaaatag gaacggtaaa
     1021 gatattaccc ctagtgccat atatttttca gaagatggca atattgtagt agggcaggcg
     1081 gcaaaagaag aggctgatat ggatcctgct ggttatgttg aattttttaa acgctacatg
     1141 ggtacgcctt ttgatgaatt acccgatagt gtgaagaaaa aatttacgat tgggacaaaa
     1201 cagtatcgcc cagaggagtt atcgtctctg gtattgaaag aattgaagcg ttcagttgat
     1261 gaatcttctt taggggtcaa gatggagcaa gtagtgatta cggttccagc ctactttaat
     1321 gaggcgcaac gaatggcaac taaaacagca ggcgagttag caggattaca agttttagaa
     1381 ataattaagg aacctcttgc agcagccttt gattacactc aaagtagtgg agacgataat
     1441 aaaactttct tgatttatga tttaggtggc gggacttttg atgcaactgt gatgtctatt
     1501 tcggaacaag aggttataga ggtcgcctct gaaggagaca gtcagttagg tggcaaagat
     1561 tgggaccagc gtatttttga attgttacat gagaaattcc tggaggagca tccagactat
     1621 gttttttctc ttggtgatga aaagcaactt cttcttaaat ctgaagaaat aaaagtaaaa
     1681 ttaacaaatt ctgaaacaac aaaggcaaaa ttaaattttg atggggaaaa agcacagcct
     1741 gtcattacac gtcaggattt tgaagatatg acggtagatt tgttagaacg aacgcttgaa
     1801 attacggaca gcttaattga aattgctaga gggaaaggat tcaatataga tgcaattcta
     1861 ttagttggtg ggtctactag aatgcctatg ataaaaaaag cattgcaatc taaatatggt
     1921 ttagaaccaa agacgcacga tccagaccaa gcagtagcaa agggggctgc gatttgggcg
     1981 gtgttcgcct atataaaagg acaaaaaatt gtcgaacaat tatcttcagg tgaacttcaa
     2041 gagaataatc taaccaagga acaacaggaa gtgttgagga atagagatag tttttctgat
     2101 agattgaata catctgttgc tagtttcggt aatctaaatg acaaggaaat tgtaactgcg
     2161 gcaacaaaaa cttacggtgt aaagctgttc tatggtgatg agttaaaaat tcagaatatc
     2221 attataaaga atagtccgct agttggtggc tgtatttctg gaactatagg agctggtacg
     2281 cgatacgaat ctcaatcgga agttcttata gaaatcattg aatcggatga gatgcaggat
     2341 atagtagact ataaagagta tatggctgaa caaatgatag gagaattgct attaacgatg
     2401 ccggttggat tgccgatagg aagccctata gaagtgactt taactttgaa tgaccagggt
     2461 ttaatcaacg catatgcaaa agagctaact ggtggtcgtg atgctagtgc ggaaattcag
     2521 attaaagggt taatgactgg ggcagaaatt gaagaagcca ttgaacacat aaatacaatg
     2581 aatatcgttg acgagattta ataaaatcgc gaaatggagg gcgtatgaaa agtgaggttg
     2641 ttggaattga tttagggaca acctatagtg ttgttgctaa actagatagc gaaactggag
     2701 aggtgagagt tcttaaaaat tcacaaggaa gttacacaac gccatccatc atagcttttg
     2761 atggagaaca aattctattt ggagaggaag ccaaagaaga attactattt ggaggagagg
     2821 cagcatcatt ctataagcgg gaactagcaa atgaggctta tcatataaaa ttaggtgaaa
     2881 aatcatataa tgcttgtgaa ctaagttctc tatttttgga gtatctggta aaagatatag
     2941 aagagacaca tggatttgct attgatgcgg cggtcatatc tgttccggct tattttaccc
     3001 atgttgaggt acaagctact atgaaagcag ctaatctagc tggtataaag gtattgggtg
     3061 tgattcacga gcctaccgca gcggccctgg catatggaat agaatcgagt aatgaatcaa
     3121 aaacgattct tttttatgat ttgggaggag gcactttcga tgtaacggtt attagaatca
     3181 ctggtgagga gtttacggta ctcggctcga gtggagatag ccaattaggg ggtaaagatt
     3241 ttgatcaacg tcttaaagat tactttcttg acgaggtgaa atactaccta gatgaaacag
     3301 agaataattc ggtcatacag tcagttttgg gaattgagaa aataaaaaaa aggttatcag
     3361 aatttaatga ggttccagtt ccgataacga ttgctggtaa aaaggaagag gttattcttt
     3421 ttcgttcaga atttgaaagt ttgtcagaag atttggtaga taggacagta gagattagtg
     3481 aatcgctctt gaatgatctg cacttaacct ggagtaccat tgataaaatt attttagttg
     3541 gcggttcagt caagatgccg atgataagaa attgttttgt gtctaagctt gggagagttg
     3601 tggaaaatgg ggtcaacgtt gatgaggcag tagcaattgg tgcggcaatt agggctaata
     3661 tgctcagtaa agaaaaacag aatagtataa ttggaaccaa gaaattgcaa aattttattc
     3721 aattcacaga tgtgacttcc catggtcttg ggatgatagc tttgaatgaa aacagagata
     3781 agtatattaa tagtattatt gttcctaaaa attctacaat acctgtaagt atccgaaaga
     3841 gatatgtatt taagccgacg aatcagtcat cggaaatgga aatattcgta cttcagggag
     3901 aagatagtcg agttgcattt aatactttcg ttaataaata tattgtcaat ggattcgatc
     3961 cctctgaatt tgaacggaca gttgaggtta cagttactta ttcatacaat actgatggct
     4021 tgattgaggt ttttgcacat acagatggga aaaagttgac agtaataaca gataatcgag
     4081 atcgagatat ttcgtgggct tatgagttgc ctaaggatgg gatgaattac aaacaaatct
     4141 gtatcgcaat agatacgagt ggtagtatgg taggatatcc gatacatgag gctaaagcgg
     4201 ctactcttca atttattgac caaatgggtt ctaatgtcta tattggtctt atttctgtag
     4261 ccgatactgc tagttgtatt tgtccgttga cacgagatag ggagcgtcta agtagggcgt
     4321 tagagcgatt gataacccat tcctgtccag atggcggtgg aaatttaggg catccttttg
     4381 aattagcttc agagcttatg gaagaggggt tgttaattgt actggctgac gggatatgga
     4441 agcatcaaca taatgccata gaagcagcga atcgaataaa gtatagaatt gatattgttg
     4501 gtattggttt tggtagtgca gacgaagagt tcttgaggga gatttcttca attgaaggca
     4561 tcggtggtat gaccgatttg gagaatttat ccaaatcatt ttcaaacgtt gctcaggtca
     4621 tttcggaggg gagtccttca ttaggaatca aggcattaga ttaggaggag atattggaaa
     4681 caataggtaa tatttgtcaa ttaattgatt tctatcggtg ctttaatatt ggatatgtgg
     4741 tagatagaaa tagggctttg agtaagtgta cttctttgcc attacaaaaa ggaaccatcg
     4801 ttctgagaga gtttataaag catgcaacgg attcccaatt tattgcatta gtaggaaatg
     4861 tatataatga ggtgtttcac aacttagaac ttgctcttat tcaggctagt aactctgcta
     4921 cacagacctt gagtcgaagc gatgtagata aattggtatc tcagcatttt acaggacagg
     4981 tcagtcagga agttcttcaa aaagtgacta ctcaacttca tattcaaata gatggaaggg
     5041 agaaaagtca gagtgttcta gaagcagaaa gagaagagaa aataagaaag gcagatagta
     5101 ttttaaagga atataaagtt cctcaattcc aaaagcgt
//
LOCUS       DASGAC010000145         5135 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.146, whole genome shotgun sequence.
ACCESSION   DASGAC010000145 DASGAC010000000
VERSION     DASGAC010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5135)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5135)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5135
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.146"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            14..724
                     /locus_tag="U1335_001771"
     CDS             14..724
                     /locus_tag="U1335_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM5232228.1"
                     /translation="MKVPKYQLIQNDLRQQIISGKFENGDKFYTESELTKLFNVSSIT
                     VIRAVNELVKDGYLVRQQGKGTFVSRSRKGRLVEFSDIEIFPMDKDKVTVLSCEKGNK
                     PDILEKLNLDKNEFYYKIVRVRAAEDTPYIFHNSYIPQRYIQNPDAPLEHYQSIYQRF
                     KLDYNIHMSEEPFVETNEIVSPCPKEVATHLKLKATEPAVLQNKTTTNSTSGEVMEYT
                     ETYKHWKYYKFEITANHR"
     gene            complement(864..1595)
                     /locus_tag="U1335_001772"
     CDS             complement(864..1595)
                     /locus_tag="U1335_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM5232229.1"
                     /translation="MVSQTVEKPLYLQLVDKLEVAIRERMAPNDKLFSERELTQVYGV
                     SRITVRLALQELEKRGLVYKKHGKGTYVSEISDTAVDLSQAYSFTEQMKKIGKVPRTS
                     ILSFKLVKASDYIVQHLQLSQGEEVFEVERLRLADEVPMMLERTYVPASLFPALTAIR
                     MREKPLYEIFLEDYGQTIRLAEEEFYASIALDNEAKILGIPSNSPVLHLVRKTYNDKN
                     RIIEFTFSIARADQFRYKISHQRGY"
     gene            complement(1695..2012)
                     /locus_tag="U1335_001773"
     CDS             complement(1695..2012)
                     /locus_tag="U1335_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF960 domain-containing protein"
                     /protein_id="HEM5232230.1"
                     /translation="MAFEQTNGRYASFGVVTSLPGEVIDSLWYVIDHYLKGVIPLKNV
                     IRFSIKNRRGKITLVFSQEGYKNVLAVDLSSRFDPFYPSTILVMDKQGKETITLPDEV
                     TLL"
     gene            complement(2070..2603)
                     /locus_tag="U1335_001774"
     CDS             complement(2070..2603)
                     /locus_tag="U1335_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000775318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF402 domain-containing protein"
                     /protein_id="HEM5232231.1"
                     /translation="MKLPKEGDFITIQSYKHDGEIHRTWRDTMVLKTTENAIIGVNNH
                     TLVTENDGRRWVTREPAIVYFHKKYWFNIIAMIRENGVSYYCNLASPYVLDNEALKYI
                     DYDLDVKVFADGEKRLLDVDEYKRHRKAMKYSDDIDFILKENVKILVDWINNQRGPFS
                     PAYVNIWYKRYLELRSR"
     gene            complement(2679..3455)
                     /gene="recX"
                     /locus_tag="U1335_001775"
     CDS             complement(2679..3455)
                     /gene="recX"
                     /locus_tag="U1335_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015605548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HEM5232232.1"
                     /translation="MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQ
                     EFRELRDFAQFSYGKNLALYYLSFKQRTKKEVLDYLEKYEIAGATALKIVANLEEDKW
                     IDDKNYVETYIRQNDLNGDKGLAMLRQKLMMKGISKSIIEDGLAGIDFSDLAERVAEK
                     LCRKYQAKLPLRALQDKVVQGLMGKGFSYETAKQSLGQLELVADEENEDALIAKELDK
                     QYRKYSRKYEGYELKQRLIQALARKGYDFDRIQAVLRDYL"
     gene            3493..5124
                     /gene="rlmD"
                     /locus_tag="U1335_001776"
     CDS             3493..5124
                     /gene="rlmD"
                     /locus_tag="U1335_001776"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HEM5232233.1"
                     /translation="MNLQVHQRIPLKIKRMGINGEGIGFYQKTLVFVPGALKGEEIFC
                     QITSVKRNFVKAKLLKINKESKFRVKPACDIYQACGGCQIMHLRYDKQLDFKQDLLRQ
                     ALKKFKPAGYEDYLIHPTIGMEQPSHYRAKLQFQTRSFKDQVKAGLYAENSHRLIGIT
                     NCYVQDAETQEIINGIAKLLTKHRIPIYNERKQHGIRTVMVRKARKTGQVQVIFITSC
                     QVNLIKLIDELTSQFPSIITIALNWNRQKTSDIYGEKTEILWGKQAIDEAVLDYEFSL
                     SPRAFYQLNPQQTEILYGEAIKALDISGDEDLIDAYCGVGTIGFAFAKKVKSVRGMDI
                     IPEAIEDAKANAKRMGLSNTHYEAGKAEEIIPKWYQEGYRADALVVDPPRTGLDEKLL
                     KTILDYKPAKMVYVSCNVSTLARDLVELSKAYKVEYIQSVDMFPHTARTEAVVKLSKR
                     DINHHIDLEINEEDLKDISVKKDATYSEIKDYVFRKFELKVSTLNIAQVKRKLGIIER
                     ENYNHSKKENQRVPNCPPKKEQAIIDALTWFGMIE"
BASE COUNT         1681 a         1132 c          836 g         1486 t
ORIGIN      
        1 gaaggaaata agtatgaaag tacctaagta ccagcttata caaaatgact tacgtcagca
       61 aatcatttct ggtaaatttg aaaatggcga caaattttac acagaatctg aattaacaaa
      121 actatttaac gttagctcta tcaccgttat tcgtgcagta aacgaactag ttaaagacgg
      181 ctacctcgtt cgtcaacaag gtaaagggac ctttgtatcc cgttcacgca aaggacggct
      241 tgtagaattt tctgatattg agatttttcc gatggataag gataaggtta ctgttctctc
      301 gtgcgaaaaa ggcaataaac ccgatatcct tgaaaaacta aatcttgaca agaatgagtt
      361 ttactataaa attgtacgcg tccgcgcagc agaagacact ccatacatct tccacaattc
      421 atatatccct caacgatata tccagaatcc cgatgctcca ctcgagcact atcaatcaat
      481 ctatcaacgc ttcaaactgg actacaatat ccacatgtcc gaggaaccat ttgtagaaac
      541 aaatgaaatt gtcagcccat gtccaaaaga ggttgccact catttgaaat taaaagcgac
      601 tgaaccagct gtactacaaa acaaaacaac tactaacagt actagcggtg aagtgatgga
      661 atatactgaa acttacaaac actggaagta ttacaaattt gaaattacag ccaatcatcg
      721 ctaaaaaaac gcagactaac gtccgcgttt ttttcatacc caataacaat caacagtagc
      781 ctaggaaacg aaaccgaaga tagaactgga tttcatcaag gctctcgaca acgaataatt
      841 ttgattttcg aagagtatta attctaatat ccccgttgat ggctaatctt gtaacgaaac
      901 tggtccgctc tagcaatact aaacgtaaac tcgataattc tattcttgtc attatacgtt
      961 tttcttacca aatgaagcac tggactattg cttggaattc cgagtatctt agcttcatta
     1021 tccaaagcaa tacttgcata gaactcttct tctgctagtc gaattgtctg accataatcc
     1081 tcaagaaaga tttcatagag tggtttttcc ctcatcctga tggctgttaa ggcaggaaat
     1141 agcgaggcag gaacatatgt cctttccaac atcatcggaa cctcatctgc aagtctcaaa
     1201 cgttcaactt caaacacttc ctcaccctga ctaagttgta aatgctgcac aatatagtct
     1261 gacgccttaa ccaatttaaa ggataaaata gatgtcctcg gtactttccc aatttttttc
     1321 atttgctcag taaaactata ggcctgagat aaatcaactg cagtatctga aatctcagat
     1381 acataggttc ccttaccatg cttcttatag actaagccac gtttttccaa ttcttgcaaa
     1441 gccaaacgaa ctgtaatacg actgacacca taaacctgtg tcaactcacg ctctgaaaat
     1501 aacttgtcat tcggagccat cctctcacga attgcaactt ccaatttatc aaccaactgc
     1561 aaatagagag gtttttcaac agtttgacta accatagact cctcctttct aacccacata
     1621 agcttacaaa tctattgtac accaaattcc atatattaac aatatcttag gtgataaaat
     1681 accagctctt caagctaaag caaggtcacc tcatctggca aagtaatggt ctcttttccc
     1741 tgcttgtcca ttaccaagat tgttgatgga taaaaaggat caaaacgact acttaaatct
     1801 acagccagta catttttata accttcctgc gaaaagacca gcgtaatctt accacgacga
     1861 tttttgatag aaaaacggat tacatttttc aaaggaataa ctccttttaa gtagtgatca
     1921 ataacatacc ataaactatc aatcacttcc ccaggaagtg aggtcacaac tccaaaactt
     1981 gcatagcgcc catttgtttg ttcaaaggcc ataagcccct cctttacaat aagaaaaaag
     2041 cctgtaaaac aggattttct tttctaactt tatctacttc tcagttctaa atagcgtttg
     2101 taccagatat taacgtaggc tggagagaaa ggaccgcgct gattattgat ccaatcaacc
     2161 agtatcttga cattttcctt caaaataaaa tcaatatcat ccgaatactt catcgcctta
     2221 cgatgacgct tatattcatc cacatccagc aatctctttt caccatcagc aaagacctta
     2281 acatctaggt cataatcaat gtatttgagt gcctcattgt cgagaacata tggactagca
     2341 aggttacaat aataggaaac tccattttca cgaatcattg ctatgatatt gaaccagtat
     2401 tttttatgaa aataaacgat tgctggttct cttgttaccc aacgcctgcc atcattttca
     2461 gtcactaagg tatgattatt gactccaata atagcatttt ccgttgtttt taataccatg
     2521 gtgtcacgcc aagtgcgatg aatttcaccg tcatgcttat aactttgaat tgtaataaag
     2581 tcgccttcct ttggtaattt cactttgtta ccaactttct acaattacaa tttatcttga
     2641 ctattatatc atatttttct aacctaggct aaattttttc acagataatc acgaaggaca
     2701 gcctgaatcc gatcaaagtc ataacccttt cgagctaaag cctgtatcaa cctttgcttc
     2761 aattcgtagc cttcatattt acgactatat tttctatact gcttatccag ttccttggca
     2821 attaaggcat cttcattttc ctcatcagcc acaagttcca actgacccag gctttgtttg
     2881 gccgtctcat aagaaaaacc cttgcccatc aatccctgta caactttatc ttgcaaagct
     2941 cgaagaggca atttcgcttg gtactttcga cataattttt ctgcaaccct ttcagctagg
     3001 tctgaaaaat caatcccagc cagtccatct tcaattattg atttcgaaat tcccttcatc
     3061 atcaattttt gacgaagcat agctagtccc ttgtcaccat tcaagtcatt ctgacggata
     3121 taggtttcta catagttttt gtcatcaatc cacttatctt cttccaaatt ggcaacaatt
     3181 tttagagcag tggctcctgc aatctcatac ttttccagat aatccaatac ttcttttttg
     3241 gtacgttgct tgaaggaaag gtaataaagt gctagatttt tcccataaga aaactgagca
     3301 aaatcgcgaa gctcacgaaa ctcctgctcc gtgatttcct ttcccttact aagcatgaag
     3361 cgaacaattg tgtcttccgt aatatataaa ctatcctgac cgtccacttc aagtaaataa
     3421 agacgtttct tcttttcaat ttttgtaatt ctcattcttt cattatacag gatttttcgg
     3481 taaaataata atatgaatct acaagtacac caacgaatcc ccttaaaaat caaacgaatg
     3541 ggcatcaacg gagaaggcat cggattttat caaaaaacgc tagtctttgt ccctggtgcc
     3601 cttaaggggg aagaaatttt ttgtcaaatt acctcagtca aacgaaattt cgttaaagca
     3661 aaattgttaa aaatcaacaa ggaatcaaaa ttccgtgtca agcctgcctg tgacatctat
     3721 caagcctgtg gtggttgtca aatcatgcac ctccgctatg ataaacaatt agacttcaaa
     3781 caagacctgc tccgacaagc cttgaagaaa tttaagccag caggctatga ggattacctc
     3841 attcacccaa ccattggaat ggagcagcca agtcattatc gggctaaatt acagtttcaa
     3901 acccgttcat tcaaggatca agtcaaggct gggctctacg ctgaaaattc ccatcgcttg
     3961 attggaatta cgaattgtta cgtccaagat gccgaaacac aagagattat caacggaatc
     4021 gcaaagctac tcaccaagca ccgtattcct atttataatg agcgcaagca acacggaatc
     4081 cgcacggtta tggtccgcaa ggctcgaaaa acaggtcaag ttcaagtgat ctttatcacc
     4141 tcttgtcagg ttaatcttat taaattaatt gatgaactca ccagtcaatt tccaagtata
     4201 atcactattg ctctaaactg gaatagacag aaaacgagtg atatttatgg tgaaaaaaca
     4261 gaaattttat ggggcaaaca agctatcgat gaagctgttt tagattacga attctcacta
     4321 tctccacggg cattttacca actaaatccc caacaaacag aaattctata tggcgaggcc
     4381 atcaaggctt tggatatttc aggagatgaa gacttgattg atgcctactg tggcgtgggc
     4441 acaatcggct tcgcctttgc taaaaaggtc aaatctgttc gaggtatgga cattattcca
     4501 gaagccatcg aggatgctaa agcaaacgct aagcgaatgg gactatccaa tacccactat
     4561 gaggcaggta aagcagaaga aatcattcca aagtggtacc aagaaggcta cagggccgat
     4621 gccttggtag ttgatcctcc acgaactgga ctcgacgaaa agctcctcaa aaccattttg
     4681 gattacaaac cagctaaaat ggtttatgta tcctgcaacg tctccactct tgcaagggac
     4741 cttgttgagc taagcaaagc ctacaaggta gaatacattc aatctgttga catgtttccc
     4801 cacacagcac ggacagaggc ggttgtgaaa ttgtccaaac gagatatcaa ccatcatatt
     4861 gatcttgaaa tcaatgaaga agatctcaaa gatatttctg tcaagaagga tgccacttat
     4921 tcagaaatca aagattatgt ctttagaaaa tttgaattaa aagtatctac ccttaacatt
     4981 gcacaagtaa aaaggaaact tgggataatc gagcgagaga actataatca ctctaagaaa
     5041 gaaaatcaaa gagttccaaa ttgtccaccc aaaaaagaac aagctatcat cgatgcgtta
     5101 acttggtttg gaatgattga gtaattaaat aaatt
//
LOCUS       DASGAC010000146         5069 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.147, whole genome shotgun sequence.
ACCESSION   DASGAC010000146 DASGAC010000000
VERSION     DASGAC010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5069)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5069)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5069
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.147"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..804)
                     /locus_tag="U1335_001777"
     CDS             complement(<1..804)
                     /locus_tag="U1335_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF975 family protein"
                     /protein_id="HEM5232234.1"
                     /translation="MFTISNIRERARQTLNETPGIYQVAVIPVTISVIVQLISFSRNS
                     LAGVTAEELASPSYFISTSLFPLFYGLLLGLLHLSIICTIFHLIKGVKTSTSFKDVLM
                     IFNHKDFWKIFRTYILKSFLLFLWGLLCYLGIGLLIGAGTMITIIAASSQSLAPDALP
                     MEILAILGLMAMGGLLLMVLGIALYIPQFYAYSQVEYILFEQLERKEYTGAFSIIRSS
                     RKLMKGYKFKRFTLDLSFIGWFLLVIITFGLAGLYVWPYHYAAQMHFHEE"
     gene            1125..2267
                     /gene="tgt"
                     /locus_tag="U1335_001778"
     CDS             1125..2267
                     /gene="tgt"
                     /locus_tag="U1335_001778"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEM5232235.1"
                     /translation="MTDVPIKYRLIKKEKHTGARLGEIITPHGTFPTPMFMPVGTQAT
                     VKTMSPEELKAMGSGIILSNTYHLWLRPGDELVARAGGLHKFMNWDQPILTDSGGFQV
                     YSLADSRNISEEGVTFKNHLNGSKMFLSPEKAISIQNNLGSDIMMSFDECPQFYQPYD
                     YVKKSIERTSRWAERGLKAHRRPHDQGLFGIVQGAGFEDLRRQSAHDLVSMDFPGYSI
                     GGLAVGETHDEMNAVLDFTTPLLPENKPRYLMGVGAPDSLIDGVIRGVDMFDCVLPTR
                     IARNGTCMTSRGRLVVKNAQFAEDFTPLDPECDCYTCKNYTRAYLRHLLKADETFGIR
                     LTSYHNLYFLINLMKNVRQAIMDDNLLEFRQDFMEKYGYGKNGRNF"
     gene            complement(2307..3392)
                     /locus_tag="U1335_001779"
     CDS             complement(2307..3392)
                     /locus_tag="U1335_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000040814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEM5232236.1"
                     /translation="MSKLHHVKSYLEANKMDLAIFSDPVSIYYLTGYHSDPHERHMML
                     FVMPDHDSLLFLPALDVERAVSTVDFPVAGYMDSENPWQIIKSKLPQKSFSAIGAEFD
                     NLNLTRYHGLQSIFSQPFSNITPLINTMKLIKSRDEIEKMLVAGEFADKAMQVGFNNI
                     SLDVTETDIIAQIEFEMKKQGISKMSFETMVLTGDNAANPHGIPSTNKIENNALLLFD
                     LGVETLGYTSDMTRTVAVGKPDQFKKDIYNLTLEAHMAAVNMIKPGVTAGEIDYAARS
                     VIEKAGYGEFFNHRLGHGLGMSVHEFPSIMEGNDLVIEEGMCFSVEPGIYIPGKVGVR
                     IEDCGYVTKNGFEVFTKTPKELLYFEG"
     gene            3601..4605
                     /gene="ccpA"
                     /locus_tag="U1335_001780"
     CDS             3601..4605
                     /gene="ccpA"
                     /locus_tag="U1335_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolite control protein A"
                     /protein_id="HEM5232237.1"
                     /translation="MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLE
                     VIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFATLAKGIDDIADMYKYNIVLAN
                     SDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
                     SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEG
                     LVFESKYKYEEGYALAERILNAGATAAYVAEDEIAAGLLNGVSDMGVKVPEDFEIITS
                     DDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENREVVLNHGIKVRKSTK
                     "
BASE COUNT         1576 a          956 c         1099 g         1438 t
ORIGIN      
        1 ttcttcatgg aagtgcattt gtgcagcata gtgatacggc catacatata aaccagccag
       61 gccaaatgta ataatgacaa gaaggaacca gccaatgaaa gataaatcaa gtgtaaagcg
      121 tttaaacttg tagcctttca tcaactttcg actagaccga atgattgaaa aagcgccggt
      181 atattccttg cgttctaatt gctcaaacaa gatatattct acctgtgaat aagcatagaa
      241 ttgtggaata taaagagcaa ttcctaaaac cataagtagg agacctccca tggccattag
      301 ccctagtatg gcaaggattt ccataggaag tgcatcaggg gctaaggatt gactggatgc
      361 agctatgatt gtaatcatcg ttccagcacc gataagtaaa ccaataccaa ggtaacacag
      421 tagtccccaa aggaagagca agaaactttt taagatgtag gttcgaaaga ttttccagaa
      481 atctttatga ttgaaaatca tcagcacatc tttaaatgat gtggaagttt ttaccccttt
      541 gataagatga aatatagtgc atataatgga taagtgcagt agtcctaata gcaatccgta
      601 aaatagtgga aacaaggagg tagaaataaa gtagctagga ctagcaagtt cctcagctgt
      661 tactccagca aggctattgc gagagaaaga aattaactga acgataacag aaatagtgac
      721 ggggatgaca gccacttgat agataccagg tgtctcgttt agtgtttggc gagcccgctc
      781 acgtatatta gaaattgtaa acatctacat aacctccttg ctgaatattg taacataatt
      841 ctagatgaca agctaggctt tttttgataa actggaaggt gctgtggtaa tttgtcagtt
      901 tgttgtgatg cgcctgtcta tttactatta aagtaagtag aagataaggt aaatatcgct
      961 gaaataagcg agaacattaa agacattctg atggattaga ccatgcaaga ttgagaaact
     1021 gtatttccag gtaaagtact tttatggatg atatgaaaga gctgaactgt gaatccagaa
     1081 ctaatatcct aggactgttt ttcctagcgg gaggtaaata aaacatgaca gatgttccaa
     1141 tcaagtatcg cttgattaag aaagaaaagc acacaggtgc acgtttgggc gaaatcatta
     1201 ccccacacgg gacctttcca acccccatgt ttatgccagt tggaactcag gcaacggtaa
     1261 aaaccatgtc gcccgaagaa ttgaaggcga tgggttcagg cattatccta tcgaatacct
     1321 atcatttgtg gcttcgtcca ggtgacgaat tggtggcgcg tgcaggtggt ttgcacaagt
     1381 ttatgaattg ggatcaaccg attctgactg actcaggtgg ctttcaggtt tattccttgg
     1441 ccgatagtcg caatatctca gaagaaggtg ttacatttaa aaaccatctc aatggtagta
     1501 agatgttcct gtcacctgaa aaagctattt ccattcagaa caatcttggc tctgacatta
     1561 tgatgagctt tgatgagtgt ccgcagttct accagcctta tgactatgta aaaaaatcca
     1621 tcgaaagaac aagtcgttgg gcagaacgtg gtctcaaggc tcaccgccgt ccgcatgacc
     1681 aaggtttatt tggtattgtc caaggtgctg gttttgaaga tcttcgtcgc caatcagccc
     1741 atgatttggt tagtatggat tttccaggat actctattgg aggattggct gttggtgaaa
     1801 cacacgatga aatgaatgct gtactggact tcacgacccc tcttttaccg gagaataagc
     1861 cacgctatct catgggtgtt ggagcaccag atagcttgat tgatggcgtg attcgtgggg
     1921 ttgatatgtt tgactgtgta ttaccaacac gtattgcgcg taatggaacc tgtatgacca
     1981 gtcgtggacg tcttgtggtg aaaaatgccc agttcgctga ggactttaca ccgttagatc
     2041 cagagtgcga ttgctataca tgtaaaaact atacacgtgc gtatctccgc catttactta
     2101 aggccgacga gacgtttggt attcgtttga caagttacca caacctctac ttcttgatta
     2161 atttgatgaa aaatgtccgt caagcaatca tggatgacaa ccttttggaa ttccgtcaag
     2221 actttatgga aaaatatggt tacggtaaaa acggtagaaa tttctaaaca aaatgacctc
     2281 ctacaaaatc gtaggaggct tgttttttac ccttcaaaat acagtaattc ttttggtgtt
     2341 tttgtaaaga cttcaaagcc atttttggta acgtaaccac aatcctcgat acgaacacca
     2401 acttttccag ggatgtaaat acctggctcg acagagaaac acataccttc ttcgatgact
     2461 aaatcattgc cttccataat cgatgggaat tcatggacgc tcattcccaa accgtgaccg
     2521 agtcggtggt tgaagaactc gccataacct gctttttcaa tcacagagcg agcggcatag
     2581 tcaatctcgc cagcagtcac cccaggctta atcatattga ccgcggccat gtgagcctcc
     2641 agagtcaagt tgtaaatatc ttttttaaac tgatcaggtt taccgacagc gacagtccgt
     2701 gtcatatcag acgtataacc caaagtttcc acgcctaggt cgaacaatag cagagcgtta
     2761 ttctcgattt tgtttgttga gggaataccg tgtggatttg cggcattgtc gcctgttaag
     2821 accatggtct caaagctcat ttttgagatg ccttgtttct tcatttcaaa ttcaatctga
     2881 gcaataatat cagtttcggt tacatcgagt gagatgttat tgaaaccaac ctgcatagcc
     2941 ttatctgcaa actctccagc aaccagcatt ttttcaattt catcacgaga cttgatcaat
     3001 ttcatagtat taatcagagg cgtaatgttt gaaaatggtt ggctaaagat agactgaaga
     3061 ccatggtagc gggttaaatt caaattatca aattctgcac cgattgctga gaaagatttt
     3121 tgtggtaatt tgctcttgat aatctgccat ggattttctg agtccatata gccggctaca
     3181 ggaaaatcaa cagtcgaaac cgcacgctct acatccaagg cagggagaaa gagtagtgag
     3241 tcgtggtcag gcataacaaa gagcatcatg tggcgttcat gaggatcact atgatagcca
     3301 gtcagataat agatgctaac tggatcagag aagatggcca agtccatttt gttggcttct
     3361 aagtaggatt taacatgatg taattttgac atagtggagc cctttctagc atgtagtggt
     3421 aaaaaaagtg aaaatttcgt ttattatata gactattgtt ccaaaaaatg aaaaaaattg
     3481 caagtattat caaaaaaatg gcgtttttct cttgaaagtg gtttcaaaaa gtgatacact
     3541 attgttgagt gaaagcgtaa ttttcataga aatagaatat tgaaagggag tacaaaagtt
     3601 atgttaaaca ctgatgatac ggttacgatt tacgatgtcg cccgtgaagc aggtgtgtcc
     3661 atggcgacag tatcgcgcgt ggtaaatggg aataaaaacg taaaggaaaa tactcgtaaa
     3721 aaagtattag aagtcatcga ccgtttggat tatcgtccaa atgctgttgc gcgtggcttg
     3781 gcaagtaaaa aaacgacaac tgtaggggtt gtgattccaa acattgctaa tgcttatttt
     3841 gcaaccttgg ccaaaggtat cgatgatatt gccgatatgt acaaatacaa tatcgtccta
     3901 gcaaacagtg atgaaaatga tgagaaagaa atcaatgtgg taaataccct attctcaaaa
     3961 caggtggacg gaatcatttt catgggctat catttgacag acaagattcg tgcggagttt
     4021 tcacgctcac gtacaccgat tgttttagct ggtaccgtgg acttggagca ccaattacct
     4081 agcgtcaata ttgactatgc tgccgctagt gttgatgcag tcaatctatt agctaagaac
     4141 aacaagaaaa ttgcctttgt atcaggaccg cttgtagatg acatcaacgg taaagttcgt
     4201 tttgcaggct acaaacaagg cttgaaggac aatggaatcg agtttaacga aggattggtt
     4261 tttgaatcca agtataaata cgaggagggc tacgctctag cagaacgtat tttgaatgcc
     4321 ggagcaactg cagcttatgt tgcagaagat gagattgctg ctggtctatt gaatggtgtc
     4381 agtgatatgg gcgtcaaggt tccagaagac tttgaaatca ttacaagtga tgattctcta
     4441 gtgaccaagt ttacccgtcc aaacctgacc tctatcaatc agccactata tgatattggt
     4501 gcaattgcta tgcgcatgct taccaaaatc atgcacaagg aagagttgga aaaccgtgag
     4561 gtagttctta accacggaat caaagtacgg aaatcaacta agtgataaat atgggagtag
     4621 ccggataaga tatcttatta ctccgccccc tcactctatc aaacattata atcatttagt
     4681 ttatctttta ttacttcgac gagcgaggaa atatttccaa cctagaacag cctttaggct
     4741 gttctagcaa cctgtagcta ttgaggcaaa cttgcttcga cttatctcca gccttcaaag
     4801 gttccctgaa cctttgaagc gagtactaaa agcaaacgaa atggctatac taaccgaaaa
     4861 ctaaaagatt ataaaaaata aatataaagc cctcgctaga tgtataagcc tagcgagggc
     4921 tttgtggttg attttaagtc tgtcacactc tggaagttgt gcgagatgtt gatgcgaatc
     4981 tagagaagca gtactgggct ttttctcatc ctttagaact gtatcagtta ggtgattatt
     5041 ataatttacg tttacgtgta aataacgca
//
LOCUS       DASGAC010000147         5039 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.149, whole genome shotgun sequence.
ACCESSION   DASGAC010000147 DASGAC010000000
VERSION     DASGAC010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5039)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5039)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5039
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.149"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(194..1375)
                     /gene="icd"
                     /locus_tag="U1335_001781"
     CDS             complement(194..1375)
                     /gene="icd"
                     /locus_tag="U1335_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019804703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEM5232238.1"
                     /translation="MAEKILMREGRLIVPDCPVIPYIEGDGIGRDIWSVSQKVIDAAV
                     KKAYAGQRSIQWREVLAGEKAYELIGTSLPNETLEIIREHLVAIKGPLGTPIGKGHRS
                     LNVALRQELDLYACVRPIRYFKGVPSPLKEPEKTDITIFRENTEDIYAGIEWEAGSDE
                     VAKVISFLQEEMGVVNIRFPESSSIGIKPISEEGSKRLIRSAIEYALEHQLKIVTLVH
                     KGNIQKFTEGGFRKWGYELAKEEFATELAEGILVVNDIIADNFLQQILLAPENFQVVA
                     LTNLNGDYASDALAAQVGGIGISPGANINYQTGHAIFEATHGTAPDIAGKDLANPCSL
                     LLSACMMLEYIGWKEAAVLIIQALEDAFINKNVTLDFAKILDVAHQSTSQFSEVLIDS
                     I"
     gene            complement(1378..2496)
                     /locus_tag="U1335_001782"
     CDS             complement(1378..2496)
                     /locus_tag="U1335_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019790817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEM5232239.1"
                     /translation="MTETNGLKDAIACDTRISAIENDRLSYAGYDIAELMENNASFEE
                     VIYLLWNLHLPTQIELNYFEKSLRKEYAISDAVEQCILIQSRRHLHPMSVLRSTVSLL
                     GVYNVHAEENSLEALYEQSIQIMAKVPTIIATFARLRRGLVPIEPRSDLGFAANFLYM
                     LNGEEPSDLQIKAFNKALVLHADHELNASTFAARVTASTLTDLYSCVTTAIGTLKGSL
                     HGGANERVFDMLLAIRESGDTERYLQKKLDSKEKIMGFGHRVYKTVDPRQEYLKEMAR
                     DLTFGTDDEAFYRLSEEVESFIKNKKGLIPNVDFYSATVYHVLGIDSDIFTLIFAMSR
                     MAGWIAHVQEQRKNNKLIRPRSSYLGGRNLAYIPIGKR"
     gene            complement(2493..>5039)
                     /gene="acnA"
                     /locus_tag="U1335_001783"
     CDS             complement(2493..>5039)
                     /gene="acnA"
                     /locus_tag="U1335_001783"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HEM5232240.1"
                     /translation="LLESLLRKEDGVDVTKNHIMELLHYQAASPKGEIPFKPSRVILQ
                     DFTGVPVVVDLASMRDAVVKAGGNPELINPEIPVDLVIDHSVQVDFFGTEDALEKNIA
                     LEFERNNERYEFLKWAENSFENYRAVPPATGIIHQVNIEFLSDVIINNNGLLYPDSMF
                     GTDSHTTMINGIGVLGWGVGGIEAEAAMLGEASYFPVPEVIGVRLAGQLPKVATATDL
                     ALKVTQLLRQENVVGKFVEFFGPGLSSLTLADRATVSNMAPEYGATCGYFPIDGETLH
                     YMRLTNRSEEHVELTEAYAKANYLFYDAERFPSYSKVLELDLSTVVPSISGPKRPQDL
                     IELTDAKAEFQASLIREVGVRGFGLEEAELDKTATVKYVEGDEQIQTGHVAIAAITSC
                     TNTSNPYVLLAAGLLAKNAVEKGLAVSKTVKTSLAPGSKVVTGYLKKSGLQTYLDALG
                     FNLVGYGCTTCIGNSGDLRPEVAEAIKEEDLLVSAVLSGNRNFEGRINPLVKANFLAS
                     PPLVVAYAIAGNMNVDLTRDPLGYDEKQQAVYLADIMPSREEVDDYIERYVTCDLYKE
                     EYQQVFTDSQAWNAIETKTEKNYNWNSSSTYIQNPPYFDNMQADLSIKPLENLSVLAK
                     FGDTVTTDHISPAGNIARLSPAARYLEENGIVYKDFNSYGSRRGNHEVMMRGTFANIR
                     IKNELAAGKIGGWTRVGDEILPIYDAAMRYKEAGVGSIVIAGKDYGMGSSRDWAAKGS
                     SLLGVKAVLAESFERIHRSNLVMMGVLPLQFLEGQSAESLGLTGHESYTIDLPEDVGV
                     GQIVTVRAQTDDVTKEFQALVRFDAEADIRYYRHGGILPMVVRKKLGGKV"
BASE COUNT         1494 a         1241 c          828 g         1476 t
ORIGIN      
        1 tactcttctt tgtgctcctc tatggataaa agaaaatcaa tcattgtagt tcacctctat
       61 tctagtgtac tactttgatt gatctttggt tatgattttc gctttctgaa aacgaaattt
      121 tcttcatgcg tttggcgtgc ctttctttca tgtttccgtc ataaaaagag aggttctttt
      181 tactttttct tcattaaata gaatctatta gaacttctga aaattgacta gtagattgat
      241 gagcaacgtc caaaatttta gcaaaatcaa gcgtaacatt tttatttata aaagcgtctt
      301 ccaaggcctg aataattaaa acagctgctt ctttccagcc tatatattcc aacatcatac
      361 aagccgaaag caagagggaa catggattag ccagatcctt tcctgcaata tcaggagcag
      421 ttccatgtgt cgcttcaaag atggcatgac ctgtctgata attaatgtta gcacccggtg
      481 agatgcctat tcctccgacc tgagccgcaa gagcatctga tgcataatct ccatttagat
      541 ttgtaagagc aaccacctgg aagttttccg gcgccaataa aatctgctgc agaaagttat
      601 ccgcaataat gtcatttact accaaaatcc cctctgcaag ttctgtagca aattcttctt
      661 tcgccaattc ataaccccac ttgcggaaac cgccttctgt aaacttttga atatttccct
      721 tatgaactaa ggtcactatc ttcaattgat gttctagggc atattctatt gcagagcgaa
      781 tgaggcgttt actcccttct tccgaaatcg gtttgatacc aatacttgaa gattctggaa
      841 aacggatgtt taccactccc atttcttctt gtaaaaagga aatgactttg gcaacttcat
      901 ctgaaccagc ctcccattca atacctgcat aaatatcttc tgtattttca cgaaaaatag
      961 taatatccgt cttttcaggc tctttcagcg gacttggcac tcccttaaaa tagcgaatcg
     1021 gacgcacaca ggcatacaaa tctaattctt gacgaagtgc aacattaaga gaacgatgac
     1081 ctttcccaat cggcgtcccc aagggacctt tgattgcaac taaatgctca cggattattt
     1141 ccagtgtctc attcggcaaa gaagttccta ttaattcata agccttttct cctgccaaaa
     1201 cctccctcca ctgaatagaa cgttgacctg cataggcttt tttcactgca gcatcaataa
     1261 ctttttgact gactgaccaa atatccctac caataccatc tccttcaata tagggaataa
     1321 cgggacaatc tgggacaatt aaccgtccct ctctcatcag gattttttct gccatattta
     1381 cctctttcca atcgggatgt aagccaaatt cctaccacct aagtaggaag agcgcggacg
     1441 aatcaattta ttatttttcc gttgttcctg gacatgtgca atccaccccg ccatacggct
     1501 cattgcaaaa atcaatgtaa aaatatcact atcaatacct agcacatggt aaactgtcgc
     1561 cgaatagaag tctacgtttg gaattaaacc ttttttgttt ttaataaagc tctctacttc
     1621 ctctgacaat ctataaaacg cttcatcgtc tgttccgaat gtcaaatcac gcgccatctc
     1681 cttcaaatac tcttgacgag gatcaaccgt tttatagact cgatggccaa atcccataat
     1741 tttttccttc gaatccagct tcttctgcaa atatctctcg gtatcaccac tctcgcgaat
     1801 agccagcaac atgtcaaaca ctcgttcatt tgcaccacca tgcaatgagc ctttcagagt
     1861 cccaattgcc gtggtaacac aagaatataa atccgttaac gttgatgccg tgacacgcgc
     1921 agcaaaagta gacgcattca attcatgatc agcatgaagc accaaagctt tattaaacgc
     1981 tttgatttgc aaatcactcg gctcctcacc attcagcata taaagaaaat tcgccgcaaa
     2041 acccagatca gaccgcggtt caattggaac caatccacgt ctcaaacgag caaatgttgc
     2101 aataatcgtc ggaaccttgg ccataatctg aatagattgt tcatacaaag cttctaacga
     2161 attctcttca gcgtgtacat tatatactcc aaggagagat actgtcgaac gcaacacgct
     2221 cataggatgc aaatgtcgcc gtgattgaat cagaatacat tgctctaccg catctgaaat
     2281 cgcatattct tttcgcaggc ttttctcaaa ataatttaat tcaatctgag ttggcaaatg
     2341 caggttccac agaagataga tgacttcctc aaaagaagcg ttattctcca tcaattcagc
     2401 aatgtcatat cctgcatagg acaagcggtc attttcaatt gcactgattc gcgtatcaca
     2461 ggcaatcgca tcttttaacc cattcgtttc tgtcatacct ttcctcctag tttctttctt
     2521 actaccatag gtaaaatacc tccgtggcga taataacgaa tatccgcttc tgcatcaaac
     2581 cgcaccagag cttgaaactc ctttgtaaca tcgtctgttt gcgcacggac tgttacaatt
     2641 tgaccaacac cgacatcttc tggcaagtcg attgtatagc tttcatgtcc agtcaagcca
     2701 agactttctg ccgactgacc ttctaaaaat tgtaaaggaa gaacacccat catcactaaa
     2761 tttgaacggt gaatccgctc aaatgactca gcaagaacag ccttcacacc aagtaaactt
     2821 gaacctttgg ctgcccaatc acggcttgac cccatcccat agtctttacc agcaataaca
     2881 atactaccga caccagcctc cttatatctc atagccgcat catagattgg aagaatctca
     2941 tcgccaactc ttgtccaacc accaattttt ccagctgcca gctcattctt tatacgaata
     3001 tttgcaaaag tcccacgcat catgacttcg tgatttccac gacgacttcc ataagaatta
     3061 aaatccttat aaacaatgcc attctcttcg agataacgag cggctggact caatcgtgca
     3121 atattccctg ccggggaaat atgatctgtc gttacggtat cgccaaattt agccaaaaca
     3181 gataaatttt ccagtggttt tatggataaa tctgcctgca tgttgtcaaa atagggagga
     3241 ttttgaatat aggttgaaga tgaattccaa ttgtaattct tctctgtctt tgtttcaatc
     3301 gcattccaag cctgactatc tgtaaatacc tgttggtatt cttctttata aaggtcacaa
     3361 gtcacataac gctcaatgta gtcgtctacc tcctcacgac ttggcataat gtccgcaagg
     3421 tagacagctt gttgcttctc atcatacccc agcggatccc ttgttaaatc tacattcata
     3481 tttcccgcaa tagcataggc aacaacaagc ggagggctcg ctaagaaatt agcttttacc
     3541 aatggattaa tccgtccttc aaagttacga tttccagata ataccgcaga aaccaataaa
     3601 tcttcttcct taattgcctc cgctacttca ggacgcaaat cacctgagtt accgatacaa
     3661 gttgtacaac catagccaac caaattgaat cctaaggcat ctagataggt ctgcaaacct
     3721 gattttttca aatagccagt cactactttt gagcctggtg ccaatgatgt cttgaccgtc
     3781 ttagaaactg ccaaaccttt ttctaccgca ttttttgcta gtaatcctgc cgccaaaagg
     3841 acatacggat tggaggtatt tgtacacgag gtaatcgctg caatagcaac atgtcctgtt
     3901 tgaatttgct catctccttc aacatactta accgtggctg ttttatctaa ctctgcttcc
     3961 tccaaaccaa atccacgcac acctacttca cgtattaaac tagcctgaaa ctctgctttt
     4021 gcatctgtta attctatcaa atcctgtggt cttttaggac cagaaataga tgggactact
     4081 gttgataaat ccaattctaa aaccttgcta taagacggaa aacgttcagc atcatagaat
     4141 aaataattag ccttagcata ggcttctgtc aactccacat gctcctccga acggttggtc
     4201 aatctcatat aatgtaaagt ttctccatca atcgggaaat agccacaagt cgcaccgtat
     4261 tctggagcca tattggaaac agttgctcga tccgctaatg taagagaaga taaacctggt
     4321 ccaaagaatt ctacaaactt cccaactaca ttttcctgac gtagaagttg agtgacctta
     4381 agcgccaaat ccgttgcagt ggcaacctta ggcaattgcc cagctaggcg aacaccaatc
     4441 acctcaggga cgggaaaata agatgcttca cccaacattg cagcctccgc ctcaatacca
     4501 cctacacccc aaccaagtac accaataccg ttaatcatag tcgtatgact gtctgtacca
     4561 aacatagaat ctggataaag caagccattg ttgttgataa taacatcgct tagaaattca
     4621 atgtttacct gatggataat tcctgttgct ggaggcacag cgcgataatt ttcaaaggaa
     4681 ttctctgccc atttcagaaa ttcataacgt tcattatttc tttcgaactc taaggcaata
     4741 tttttctcca gagcatcttc agtcccaaaa aaatcaactt gaacagagtg gtcgatgact
     4801 aaatccactg gaatttccgg gttaatcagt tcagggtttc cacctgcttt caccaccgca
     4861 tcacgcatgg aggctaaatc taccacaaca ggaacacctg taaaatcttg caaaataaca
     4921 cgactaggtt taaaagggat ttctccttta ggagatgcag cctgataatg aagcaactcc
     4981 attatgtgat tttttgtaac atccacgcca tcttcttttc ttaaaagact ctctaataa
//
LOCUS       DASGAC010000148         5003 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.150, whole genome shotgun sequence.
ACCESSION   DASGAC010000148 DASGAC010000000
VERSION     DASGAC010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5003
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.150"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(28..1083)
                     /locus_tag="U1335_001784"
     CDS             complement(28..1083)
                     /locus_tag="U1335_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002303407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HEM5232241.1"
                     /translation="MKSNEIQVLDPTQRREKGDKGIVINEWEKLTAPSNRRLTHQNLR
                     FLFSLSWSIDRITIVGNLKEFEFDHTFVTEDGEIFYREGEKFTLNQAMPLLASEEAAE
                     RAGNGWRLLDKYGENIAYVETLPFKDPNTGKEKGRIDFNPNKIESFLKTDLKSFISMM
                     FDNPHFSRADVACDILDLPDDYVSQYRLVDAVSFRPYYGMNGALETAYWGARSSERQV
                     RMYNKKLEQEKHRQIVPEEVQSWWRLELQLRRSKADEWSGVVNETLDSFYSPFYFPSD
                     ISFREKAILRGLHADHSLWSEASDNTKRKYRKLSKRIAKEDELTQHLKASFSENIDTL
                     KRELETWLGFMKVDEEE"
     gene            complement(1171..1491)
                     /locus_tag="U1335_001785"
     CDS             complement(1171..1491)
                     /locus_tag="U1335_001785"
                     /inference="COORDINATES: protein motif:HMM:NF016876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM5232242.1"
                     /translation="MDYKIKYAEGALKDLDKIYDFVSNVSVSGAKNIVNKIRSKVNNL
                     AFMPSGFDFDDRIGRRLHDSFKTEAIISGDYLILFVVDEKNKEVIITHFISSKSNYMR
                     LLKK"
     gene            complement(1481..1765)
                     /locus_tag="U1335_001786"
     CDS             complement(1481..1765)
                     /locus_tag="U1335_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HEM5232243.1"
                     /translation="MMTTALKNVAFKMDSDTLDLASEVIKENGYNLNKVMRLYLKNVA
                     ITKKIDLPTEEELDNEFLFMQLKSEVKQRVSDVQNGKYYSDSDLVERYGL"
     gene            2240..2323
                     /locus_tag="U1335_001787"
                     /pseudo
     CDS             2240..2323
                     /locus_tag="U1335_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000527320.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-binding protein"
     gene            2372..2455
                     /locus_tag="U1335_001788"
     CDS             2372..2455
                     /locus_tag="U1335_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001814874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA methyltransferase attenuation leader
                     peptide"
                     /protein_id="HEM5232244.1"
                     /translation="MLVFKMRNVDKTSTVLKQTKNSDYADK"
     gene            2580..3317
                     /gene="erm(B)"
                     /locus_tag="U1335_001789"
     CDS             2580..3317
                     /gene="erm(B)"
                     /locus_tag="U1335_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011018369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(B)"
                     /protein_id="HEM5232245.1"
                     /translation="MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLT
                     TKLAKISKQVTSIELDSHLFNLSSEKLKLNSRVTLIHQDILQFQFPNKQRYKIVGNIP
                     YHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDIHRTLGLLLHTQVSIQQLLKLPAE
                     CFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQFHQAMKHA
                     KVNNLSTVTYEQVLSIFNSYLLFNGRK"
     gene            complement(3449..4384)
                     /locus_tag="U1335_001790"
     CDS             complement(3449..4384)
                     /locus_tag="U1335_001790"
                     /inference="COORDINATES: protein motif:HMM:NF024244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5232246.1"
                     /translation="MADKEIKPKGRWAKKKASKKKNLSKPSYRKTGRLRLQGMLKAGL
                     GTKRSKDKAEADTKDKIYSKRTFTTYKNQFRYFADWLEVAHPEAVSIEDALGYVDEYL
                     QHLIDIKRSAYSIATAKAALAKVFGVEATQFIATPPRLRANVKRSRDEVKRDKHISKK
                     KEEALARFTSATGLRRAEMQRIEAEDLFFENGKAWLKVEKGTKGGKPRKVEICGKTEA
                     ETRDLVNWIQSKKGRLFPKLSSNYDNHSYRASYAMRMYKKYIRNLDKLSRKEKYYMRG
                     DRAGEVFDRYAMKIVSENLGHNRITVIAQSYLYTD"
BASE COUNT         1488 a         1058 c          770 g         1687 t
ORIGIN      
        1 aaaaaaaaga gagagcagaa accaaatcta ctcctcttca tctactttca taaatcctaa
       61 ccacgtttcc agctctcgct tcaacgtgtc tatgttctct gaaaagctgg ctttgagatg
      121 ttgtgtaagt tcatcttctt ttgcaatacg tttagatagc ttacgatact ttctttttgt
      181 gttgtcagac gcttcagacc aaagactatg atctgcgtgt aagccacgca gaatagcctt
      241 ttctctaaag ctaatgtctg acggaaaata gaaaggcgag taaaaagaat ctagcgtttc
      301 atttactact ccgctccact catccgcttt gcttcttcgt aactggagct ctaatctcca
      361 ccacgattgc acctcttcag gtacaatctg acggtgtttc tcttgctcca atttcttgtt
      421 atacattcga acttgtcgtt cggacgaacg tgcgccccaa tacgctgtct ctagcgctcc
      481 attcatccca taatatggtc tgaatgatac cgcatcgact aagcgatatt ggctcacgta
      541 gtcgtctggt aaatcaagaa tatcgcaagc cacgtcagca cgagagaagt gcggattgtc
      601 aaacatcatt gatataaacg acttcaaatc tgttttcaaa aagctttcga ttttgttagg
      661 gttgaaatca atccgccctt tctctttgcc tgtgtttggg tctttgaaag gcagagtttc
      721 aacgtaggca atattctctc cgtacttgtc caacaaccgc cacccattgc cagctcgctc
      781 ggctgcttcc tcacttgcta ggagtggcat agcttgatta agcgtaaatt tctcgccttc
      841 tcggtaaaaa atctctccgt cttcggttac aaaagtatgg tcaaattcaa actcttttaa
      901 attgcctacg attgtaattc ggtcaataga ccaactcaaa gaaaacaaaa aacgcaaatt
      961 ttggtgggtt aaccgcctgt tagaaggggc ggtcaatttt tcccactcat ttataactat
     1021 ccctttatcc cctttttctc ttctttgagt agggtcaagg acttgaattt cattagattt
     1081 catgctataa tctattcaac aaattaagta attaaatttt ctcagaaaag tccagattgc
     1141 cgtctgggct tttcgtcttt gttgaccttt ctattttttt aacaacctca tataatttga
     1201 tttcgaagaa ataaaatgag tgataatcac ttctttattc ttttcatcta ccacaaacag
     1261 aataagataa tctcctgaga ttatcgcttc tgttttgaaa ctgtcatgca atctgcgtcc
     1321 aattctatca tcaaaatcaa accctgacgg cataaaagct aaattattaa ctttcgaacg
     1381 aatcttattg actatattct ttgctccaga aacgctgaca tttgaaacaa aatcatagat
     1441 tttgtccaaa tctttcagcg ctccttccgc atatttaatc ttataatcca tatcgttcta
     1501 ccaaatcaga atcagaataa tattttccat tctgtacatc tgaaaccctt tgtttaactt
     1561 cactctttaa ctgcataaac aaaaattcat tgtctaactc ttcttcagtt ggcaaatcaa
     1621 ttttcttagt aatagctaca ttcttcaaat acaatctcat cactttatta aggttatatc
     1681 cattctcctt aataacctcg ctagctaaat ctaaagtatc tgaatccatt ttaaatgcta
     1741 catttttcaa tgctgtagtc ataatatttc ctcctttaag taaacttgtt ccctcgacac
     1801 gttaattata cactaaaata aagttagtcg caattcttac ctgttcgctg acttattcca
     1861 atttcctttt gactaaaaga aaccttggcc agtcgtcctg ctgacgtgcc tgcccgaaac
     1921 gctaaagcct ttcggctcag cccgtccaag cgtacttcgg cccagctttt agtcaaaagt
     1981 tttctcggca taagctcact cctactactt ctctcggaag tggtcttttt tagggaaata
     2041 ttaaccactc tgctaaattt tgctaagaaa aaagtgactt tatctttacc tgttgaatcg
     2101 aatgacaaac tagaaaaaat ggcacaaaca ggtaacggtt attgcaggtg tatttcttat
     2161 ctatgggttt aacatggatt ttatcattaa aatcatgagt attgtccgag agtgattggt
     2221 cttgcgtatg gttaacccta aagttatgga aataagactt agaagcaaac ttaagagtgt
     2281 gttgatagtg cattatctta aaattttgta taataggaat tgaagttaaa ttagatgcta
     2341 aaaatttgta attaagaagg agggattcgt catgttggta ttcaaaatgc gtaatgtaga
     2401 taaaacatct actgttttga aacagactaa aaacagtgat tacgcagata aataaatacg
     2461 ttagattaat tcctaccagt gactaatctt atgacttttt aaacagataa ctaaaattac
     2521 aaacaaatca tttaacttct gtatttattt acagatgtaa tcacttcagg agtgattaca
     2581 tgaacaaaaa tataaaatat tctcaaaact ttttaacgag tgaaaaagta ctcaaccaaa
     2641 taataaaaca attgaattta aaagaaaccg ataccgttta cgaaattgga acaggtaaag
     2701 ggcatttaac gacgaaactg gctaaaataa gtaaacaggt aacgtctatt gaattagaca
     2761 gtcatctatt caacttatcg tcagaaaaat taaaactgaa cagtcgtgtc actttaattc
     2821 accaagatat tctacagttt caattcccta acaaacagag gtataaaatt gttgggaata
     2881 ttccttacca tttaagcaca caaattatta aaaaagtggt ttttgaaagc catgcgtctg
     2941 acatctatct gattgttgaa gaaggattct acaagcgtac cttggatatt caccgaacac
     3001 tagggttgct cttgcacact caagtctcga ttcagcaatt gcttaagctg ccagcggaat
     3061 gctttcatcc taaaccaaaa gtaaacagtg tcttaataaa acttacccgc cataccacag
     3121 atgttccaga taaatattgg aagctatata cgtactttgt ttcaaaatgg gtcaatcgag
     3181 aatatcgtca actgtttact aaaaatcagt ttcatcaagc aatgaaacac gccaaagtaa
     3241 acaatttaag taccgttact tatgagcaag tattgtctat ttttaatagt tatctattat
     3301 ttaacgggag gaaataattc tatgagtcgc ttttgtaaat ttggaaagtt acacgttact
     3361 aaagggaatg tagataaatt attattttgt ggttgaagtt gagaagaaaa aagcttgcat
     3421 ttctgcaagc ctttttcttt ttcttctttt agtcggtata taaataagat tgtgcaatta
     3481 ctgttattcg gttgtgtcca agattctcgg acacaatctt cattgcgtaa cggtcaaaaa
     3541 cttctccagc tctatcccct cgcatatagt acttttcttt tctagacagt ttatctaaat
     3601 tcctaatata cttcttatac attcgcattg catagctagc tctgtagcta tggttatcat
     3661 agttagatga taactttgga aacaatcttc cttttttgga ttgaatccaa ttcactaaat
     3721 ctcttgtttc cgcctctgtc ttaccacaaa tctctacttt tctaggctta ccgcctttag
     3781 ttcctttttc tactttcaac caagccttgc cattttcaaa gaaaaggtct tcggcttcta
     3841 ttctttgcat ttcagcccta cgcaagcctg tcgcactcgt aaaacgtgcc agggcttctt
     3901 ctttcttctt ggagatatgc ttatcacgtt tcacttcatc acgtgaacgc ttgacgttag
     3961 cacgcaagcg tggaggtgtt gcgatgaatt gagtcgcttc aactccaaac actttggcaa
     4021 gtgctgcctt tgcagttgcg atagaataag cagacctctt tatatcaatc aaatgttgta
     4081 agtattcatc cacatagcct agcgcatctt caatgcttac ggcttctgga tgagctactt
     4141 ccaaccagtc agcaaaataa cgaaactgat ttttgtacgt agtaaaagtt cttttagaat
     4201 agattttatc tttcgtatca gcttcagctt tatcttttga tcgcttcgtt ccaagccctg
     4261 ctttcagcat gccttgtaaa cgcaagcgac ctgtctttct ataacttggt ttagaaagat
     4321 ttttcttctt agacgctttc ttcttagccc agcgcccctt gggcttgatt tctttatcag
     4381 ccatattgac ccctttctat caaggacatt tctcaattat tcagacctgt cggtcaaact
     4441 tcggagcaaa tcaatctcct atgccgaggg ctttccctca atgcgcaact tttttctact
     4501 gtctatgcga tgacaaaatg agcaactttt taattctatg ctatgaatac catttgaaaa
     4561 gttggttctt taatctgact tcattgaaaa actcggtttg tgactaattc catttcctct
     4621 tactaaacta ctaaacttga ttcctcattc ccttttttcc tcttctaaaa aattcctttc
     4681 tacacatttt ttctttctac tacatttcct caattctatt tttctttttc ctcatgaata
     4741 acattgcact attttttcct ctttatcttt atcactgctc tagttcttca atatcttcat
     4801 accttaatca tgccacaaaa agaaaaaaat aaaaaaacga gttagacaat taaacaacaa
     4861 gataactgtt tatacgttca ttttcgctcg ctaccgctcc caaaataatc gtataaacag
     4921 ttatcggtca aaggtcgctc cacgctccca atgacctctt ttcgcacgaa tgcgtgcgat
     4981 tgtctgtgct tcgcattgca gac
//
LOCUS       DASGAC010000149         4995 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.151, whole genome shotgun sequence.
ACCESSION   DASGAC010000149 DASGAC010000000
VERSION     DASGAC010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4995)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4995)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4995
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.151"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            9..695
                     /locus_tag="U1335_001791"
     CDS             9..695
                     /locus_tag="U1335_001791"
                     /inference="COORDINATES: protein motif:HMM:NF024252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HEM5232247.1"
                     /translation="MFLGERLKDLRIKKKLSQDKLGSLLEVSKVAISNWETGKSVPSE
                     ANLERIAKVFDVDVHYFYSYGELLTIFNKLNPALQGRLIEYAATMLKQQEVNNPSSAT
                     KYPYKTYNMDSFLETLNDSSKIPSFTLNYDYTKTLYQFALWMQDNSLEPEIPMGEVVL
                     LKFANEVEDGNLYLVVFNGQPMFRKVYKHSTYYKFIPINNKYDTVFAPFEEKPEIIGE
                     IVRHFKPIEK"
     gene            complement(752..1258)
                     /locus_tag="U1335_001792"
     CDS             complement(752..1258)
                     /locus_tag="U1335_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEM5232248.1"
                     /translation="MSFINEITSKLADASALATQKTQELTQNVKVQNLVFKEKMKRDE
                     LLKTLGKSYYDKYKDVDGVEFQDMLNQITQSEETIKYYSADKTLKTLQCHSCDNFIEK
                     DSMFCQHCGANLSDPAADTSMETVPEEPPTVSSTEAIQSHNSKFCTNCGATQHEGASF
                     CVECGTSL"
     gene            complement(1276..1641)
                     /locus_tag="U1335_001793"
     CDS             complement(1276..1641)
                     /locus_tag="U1335_001793"
                     /inference="COORDINATES: protein motif:HMM:NF024637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HEM5232249.1"
                     /translation="MFCSKCGAQNKADSKFCMSCGNALSVGDASNSGQPSANSNLGSQ
                     QKLGESPDFYTYLAAILVVIMLFLQFLSPGISVLIGFLALYSAFKGRNVATNRSLHNI
                     ILVSTIIVFLIVFNRMLVP"
     gene            complement(1667..>4995)
                     /locus_tag="U1335_001794"
     CDS             complement(1667..>4995)
                     /locus_tag="U1335_001794"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012948.1,HMM:TIGR04320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SEC10/PgrA surface exclusion domain-containing
                     protein"
                     /protein_id="HEM5232250.1"
                     /translation="NTQKIQSHGSIRKLKAYGAVGVLSIGMMTTVGTVSAKAEDVVGT
                     AIVTTATTSTEVTQGQVDQAQAQVDTSKAVLNQATANVATTEQAVSAAEATYTTATGA
                     VNDKQAEISTAQEQVGNNPTVAQAQEQVDTASQAVTNTQNEIKETQADVSNLENQVSA
                     NETAVANAETQVANAETAKAQADKQLAQDAADEKTAQDAVASAQTDVNTAKTVVAEKE
                     TAVTAATQEVTAKEGEVAAAETKLAEAQVADAKRQADINTAQSEVNTTQTNVNNAQAQ
                     LDNANANLTTVESNISTAQTELDKANLALNSIYTVELSETYKSLLDQFYKARYVTKNT
                     TEMNRVWTLLQAESDRLYTASINAKNLRTLRDGLNAIESNKRVVVVANNGGLNQLTRE
                     DRLELTQFAQTIINDLRSQIGITSKVLVTEGSLDLANMVAKEYLADDWDMKKGHNTQA
                     LLRVQNATNSRIEEDADPWSYTFTSDATMTTLKVGLATAIEAMMLDDYSPSQHFGHAI
                     SLIGLDSKYLANETGDQYFGLSGYTGSKNSALLMEFNDHGVVSSKIAGTPIANPISKE
                     TLQAAVTNAENKLATAQAKLAPAQQAVTTATNKLQVAQGTLKLAQDKLAKAKAVPVQT
                     PAAQKVLDAAKTNLATAQAKLATAKTELANAKYDLAEKEEVLTSAQNTLRLAQADVAT
                     SRANVETKAQALATAKSSLTNAQNTLSASQQALADEKATLTGLQTALTTAQNQLKTAK
                     TTLITVQSYANKFNQLKAELEPLLAEQATAKSVLDNAKNKLATVTLEKSVAQANYEKA
                     VAELKTVQAQYDAYQAYLTAKAEADRLEAERKAEEARIKAEQDAKAKAEAEKLANEAK
                     AKAEAERLAKEAAEKARLEAEKKAQEEAEAKAKAEEERLANEAAEKARLEAERLAAEK
                     AKQEVLAKAEADRLAKEKAEAERLAQEAKDQAEKARLEEEARIKAEELRKAQEEAARL
                     EAERIAREKAEQEAENNQNGESSEKLAPPAQPEQPSKPNTEPTQPEIPSEKPLIAEKG
                     DPVYHEVPAIAIPKELLETRIETQVDVKQATSLESPATKPSQATSRLPETGDNINLAT
                     TVTGLALLGLAISKRKQESE"
BASE COUNT         1244 a         1023 c          990 g         1738 t
ORIGIN      
        1 aggctgaaat gtttttagga gaacgtctta aagatttacg aataaaaaaa aaattgagcc
       61 aagataaact cggctcatta ctagaagtat ctaaagtagc aatctccaat tgggagactg
      121 gaaaatctgt tccaagtgag gcaaaccttg aaaggattgc taaagttttc gatgtagatg
      181 ttcactattt ctactcctat ggggagttgc taactatttt caataagtta aaccctgccc
      241 ttcaaggaag gttgattgaa tatgctgcta caatgctaaa acaacaggag gtaaataatc
      301 catcttcggc aaccaaatat ccatataaga catacaacat ggattcattc ttagagacct
      361 tgaatgattc cagtaaaatt cctagcttca ctttgaacta tgattacaca aagactcttt
      421 atcagtttgc cctttggatg caagataact cccttgagcc tgaaatacct atgggtgagg
      481 ttgttctact taaatttgca aatgaggttg aagatggaaa tctctatcta gttgtgttta
      541 atggacaacc tatgtttaga aaagtatata agcatagcac atactacaag ttcataccta
      601 tcaataataa atatgacact gtcttcgctc catttgaaga aaaaccagaa ataattggtg
      661 agattgttag acattttaaa ccgattgaga aataataaaa acacaaatac tgtagtccag
      721 ttaaatggaa tacagtagct gtgttttttc tctataaact agttccacat tctacacaga
      781 acgatgctcc ctcatgttgt gttgcaccac aatttgtaca aaatttagaa ttatgtgatt
      841 gaatagcttc tgtactagat accgttggtg gctcttcagg tacagtttcc atactagtat
      901 cagccgcagg atcgcttaga tttgctccgc agtgttgaca gaacatgcta tctttttcaa
      961 tgaaattgtc acatgaatga cactgtaatg ttttcaaagt cttatcagcc gagtagtatt
     1021 tgattgtttc ctcagattgt gtaatttggt taagcatatc ttgaaattcc acaccatcaa
     1081 catctttata tttatcatag tatgatttcc ccaatgtttt tagtagttca tctcgcttca
     1141 ttttttcttt gaacactaaa ttttgaactt tgacattttg agttaattct tgtgtttttt
     1201 gagttgctaa tgcactagca tctgctaatt ttgatgtaat ttcattaatg aatgacataa
     1261 gacacctcta tcaatttatg gtacaagcat tctattaaat acaattaaga aaacgataat
     1321 cgtagaaacg agaatgatat tatgaagcga acggtttgtt gcaacgttcc tacccttaaa
     1381 agctgagtac aatgctaaaa atccaattaa cacacttata cctggactaa gaaattgcaa
     1441 aaatagcatg attacgacca gtatcgcagc taggtaagta tagaaatctg gagactcacc
     1501 cagtttttgc tgtgaaccta aattgctgtt ggcactaggt tgacctgaat tactagcatc
     1561 tccaaccgac agtgcattcc cgcaagacat gcaaaacttg ctatccgcct tattttgtgc
     1621 tccgcatttt gaacaaaaca tttctttctc ctttcaaact ttaaaattat tctgattctt
     1681 gttttctttt tgaaatcgca agtccaagca aggctaatcc tgttactgtg gtagcaagat
     1741 taatattgtc ccctgtctct ggtaaccttg atgttgcctg agaaggctta gtagctggtg
     1801 attccaaact tgttgcttgt tttacatcaa cttgcgtttc aatcctagtc tcaagtaact
     1861 cttttggaat tgcaatcgca ggaacttcgt gatatacagg atctcccttt tctgcaatca
     1921 atggtttttc agatggaatt tctggttgtg ttggctctgt attcggttta gaaggttgct
     1981 caggctgagc tgggggtgct agtttctcag acgattctcc attttggttg ttctcagcct
     2041 cttgctctgc tttttcacgg gcaattcgtt ctgcctctaa acgcgcagct tcttcttgag
     2101 ctttacgcaa ttcttctgct ttaatgcgag cttcttcttc caagcgagcc ttttctgctt
     2161 gatctttagc ttcctgagcc aaacgttctg cttcagcctt ttcttttgca agacgatccg
     2221 cttctgcttt tgctaaaact tcttgttttg ctttttctgc agccaagcgc tctgcttcta
     2281 aacgggcttt ttctgcggct tcgttagcta aacgctcctc ttcagctttc gccttagcct
     2341 ctgcttcttc ttgcgccttt ttctcagctt ctaaacgagc tttctcagca gcttcttttg
     2401 caagacgttc tgcctctgct ttagccttgg cttcattcgc caatttttct gcttcagctt
     2461 tagctttagc atcttgttca gctttgatgc gagcttcttc tgccttacgt tctgcttcca
     2521 aacgatcagc ctcagcttta gcagttaggt aagcctggta agcatcatac tgagcttgaa
     2581 ctgttttcaa ttcagcaaca gctttttcgt aattagcttg cgcaacggac ttttcaagag
     2641 tgacagttgc tagtttgttt ttagcgttgt ccaagacaga tttggcagtt gcttgttctg
     2701 caagcaatgg ttccaattca gctttcaatt gattaaactt gttcgcataa ctttgtactg
     2761 ttatcaaagt agttttagca gtcttaagct ggttttgagc agtagtcaat gcagtctgca
     2821 aacctgtcaa cgtcgctttc tcatcagcca aagcttgttg tgaagctgac aaagtgtttt
     2881 gtgcattagt gagactagat ttagcagtcg caagagcttg tgcctttgtt tctacatttg
     2941 cgcgacttgt tgctacgtca gcttgtgcta agcgaagggt attttgagca gatgtcaaaa
     3001 cctcttcttt ttcagcaagg tcatatttag cgttcgcaag ttcggtttta gcagtagcaa
     3061 gttttgcctg agcagttgcc aagttagttt tagcagcatc caatactttt tgcgcggcag
     3121 gtgtttgaac aggaactgct tttgccttag ctagcttatc ctgtgccaat ttcaatgtgc
     3181 cttgtgctac ttgtaattta tttgtagcag ttgttacagc ttgctgggca ggagccagtt
     3241 tcgcttgagc tgttgctagt ttgttctcag cgtttgtaac tgctgcttga agagtctctt
     3301 tagagattgg attagcaatt ggtgtgcctg caattttgct tgagacaact ccgtggtcat
     3361 tgaactccat caataaagca gagtttttag accctgtata accagagagt ccaaaatatt
     3421 gatcgccggt ttcattagct aagtattttg aatccaaacc aatcaatgaa atagcgtgtc
     3481 caaaatgttg agatggtgaa taatcatcaa gcatcatcgc ttcaatagca gttgccaaac
     3541 caactttaag agttgtcatt gtggcatctg aagtaaatgt gtaactccat ggatcagcat
     3601 cttcttcaat acgtgagttt gtagcatttt gcactcgaag aagagcttga gtgttatgac
     3661 cttttttcat atcccaatca tctgccaaat actcttttgc gaccatattg gcgaggtcaa
     3721 gggaaccctc agtaaccaaa acttttgatg taatccctat ttgagaacgg agatcattga
     3781 taatcgtttg ggcaaactgc gtcaattcca atcggtcttc tcttgttagc tggttaagac
     3841 ctccgttgtt tgcaaccaca accactcgtt tgttgctttc gatagcattc aagccatcac
     3901 gcaaagtgcg gagattttta gcgttgatcg aagcagtata taaacgatct gactcagcct
     3961 gtagtaatgt ccatacacga ttcatctctg ttgtgttttt tgtaacatag cgagctttgt
     4021 agaattggtc aagcaaagac ttgtatgttt cggaaagctc tacagtatag attgagttaa
     4081 gtgccaagtt tgctttgtcc agctcagttt gtgctgttga gatattgctt tcaacagttg
     4141 ttaagttggc gttagcattg tctaattgag cttgagcgtt gttcacgttc gtttgtgtag
     4201 tgttcacttc tgattgagca gtgttgatat ctgcttgacg tttagcatct gcaacttgag
     4261 cttctgctag tttcgtctca gcggcagcta cttcaccttc ttttgcagtt acttcttgag
     4321 tagctgctgt tacagctgtt tctttctctg ctacaactgt ttttgctgtg ttcacgtcag
     4381 tctgtgcact ggctactgca tcttgagcag ttttttcatc tgccgcgtcc tgtgccaact
     4441 gtttgtctgc ttgcgctttt gctgtctcgg cattggctac ttgagtttcg gcattagcta
     4501 cagctgtttc attggcagaa acttgatttt caagatttga tacatctgct tgtgtttctt
     4561 taatctcgtt ttgtgtatta gtaacagctt gtgatgcagt atccacttgt tcctgtgctt
     4621 gtgcaactgt tgggttgttg cccacttgct cctgggcagt ggaaatctct gcttgcttgt
     4681 cgttgactgc acctgttgca gtagtgtaag ttgcttcagc tgctgaaaca gcttgctctg
     4741 tagttgcaac atttgccgtt gcttgattaa gaactgcttt gcttgtatcc acttgagcct
     4801 gagcttgatc aacctgacct tgcgttacct cagtcgaagt tgtagcagtt gtgacaatag
     4861 ctgttcctac aacatcttct gctttcgcac tcactgtacc tacggtagtc atcatcccga
     4921 tagacagaac tccgactgca ccataggctt tgagtttgcg aattgaaccg tgtgattgaa
     4981 ttttttgtgt gtttg
//
LOCUS       DASGAC010000150         4964 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.152, whole genome shotgun sequence.
ACCESSION   DASGAC010000150 DASGAC010000000
VERSION     DASGAC010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4964
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.152"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            102..1223
                     /locus_tag="U1335_001795"
     CDS             102..1223
                     /locus_tag="U1335_001795"
                     /inference="COORDINATES: protein motif:HMM:NF015000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232251.1"
                     /translation="MKRFHRSKWKKIVISTIIPLICFGIWYGVSFATASLQPLLSNFF
                     PNHVQTIYNLSVALLYSNLVFTITLPLWIWWKILFNERFTWWKPSSLLFIFLPAFPVF
                     LLAGFEAASHLPKSPLIISHRALNDHQAIENTVEAVQLASESNPDYIEIDLWGTVDLE
                     FIAFHDPTLINWAGLDYRPHDLTLASLIETTISDAAGHTAKIASFDQILAEATAKKQK
                     LLIDFKTSELDSPQMVDNFMKKYQKQLEDEGHQLQSADPHFINAILKYAPKFETYLLM
                     SAPPEIELPNLTGYSVPLDQLTDDLLNYIRKSGKSFYVWTVNTPEGVQQADSIEVDGI
                     ITDYPTRTQTVLSGLSQANKYTKLYQEQLQYFKIFPIQE"
     gene            complement(1457..3538)
                     /gene="fusA"
                     /locus_tag="U1335_001796"
     CDS             complement(1457..3538)
                     /gene="fusA"
                     /locus_tag="U1335_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEM5232252.1"
                     /translation="MAREFSLEKTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETH
                     EGASQMDWMEQEQERGITITSAATTAQWNNHRVNIIDTPGHVDFTIEVQRSLRVLDGA
                     VTVLDSQSGVEPQTETVWRQATEYGVPRIVFANKMDKIGADFLYSVSTLHERLQANAH
                     PIQLPIGSEDEFRGIIDLIKMKAEIYTNDLGTDILEEDIPAEYLEQAEEYREKLVEAV
                     AETDEELMMKYLEGEEITNEELKAAIRKATINVEFFPVLCGSAFKNKGVQLMLDAVID
                     YLPSPLDIPAIKGVNPDTDAEEERHASDEEPFAALAFKIMTDPFVGRLTFFRVYSGVL
                     NSGSYVLNTSKGKRERIGRILQMHANSRQEIETVYAGDIAAAVGLKDTTTGDSLTDEK
                     AKIILESIHVPEPVIQLMVEPKSKADQDKMGIALSKLAEEDPTFRVETNVETGETVIS
                     GMGELHLDVLVDRMRREFKVEANVGAPQVSYRETFRASTQARGFFKRQSGGKGQFGDV
                     WIEFTPNEEGKGFEFENAIVGGVVPREFIPAVEKGLVESMANGVLAGYPIVDVKAKLY
                     DGSYHDVDSSETAFKVAASLALKEAAKSAQPTILEPMMLVTITAPEDNLGDVMGHVTA
                     RRGRVDGMEARGNTQIVRAYVPLAEMFGYATVLRSATQGRGTFMMVFDHYEDVPKSVQ
                     DEIIKKNGGNA"
     gene            complement(3867..4337)
                     /gene="rpsG"
                     /locus_tag="U1335_001797"
     CDS             complement(3867..4337)
                     /gene="rpsG"
                     /locus_tag="U1335_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011285383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEM5232253.1"
                     /translation="MSRKNQAPKREVLPDPLYNSKLVTRLINRVMLDGKRGTAASIVY
                     GAFDQIKEATGNDALEVFETAMENIMPVLEVRARRVGGSNYQVPVEVRPERRTTLGLR
                     WLVTIARNRGEHTMIDRLAKEIMDAANNTGAAVKKREDTHKMAEANRAFAHFRW"
     gene            complement(4354..4767)
                     /gene="rpsL"
                     /locus_tag="U1335_001798"
     CDS             complement(4354..4767)
                     /gene="rpsL"
                     /locus_tag="U1335_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001142328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEM5232254.1"
                     /translation="MPTINQLVRKPRKSKVEKSKSPALNVGYNSRKKVQTNVSSPQKR
                     GVATRVGTMTPKKPNSALRKFARVRLSNLIEVTAYIPGIGHNLQEHSVVLLRGGRVKD
                     LPGVRYHIVRGALDTAGVNDRKQGRSKYGTKRPKG"
BASE COUNT         1391 a         1069 c          968 g         1536 t
ORIGIN      
        1 ttgaaaaaaa aataaaaaat gttacaatag taattaacat attttagaaa gtataatacg
       61 taatgcgaac aacccattca gagagcatta aaagacgctc attgaaaaga tttcatcgtt
      121 caaaatggaa aaaaatagtt atcagcacta tcatacctct aatctgcttt ggaatttggt
      181 acggagtcag ctttgccacc gcttccttac aacccttgct ttcaaatttt tttcctaacc
      241 atgtgcaaac catttataac ctatcagttg ctcttttata cagtaaccta gtttttacaa
      301 tcacacttcc tttatggatt tggtggaaaa tcctattcaa cgaaagattt acttggtgga
      361 aaccttcctc ccttctattt attttcctac ctgcatttcc tgttttctta ttagctggat
      421 ttgaagcagc ctcccatctt ccaaaatctc ctcttattat ctctcaccgc gctttaaacg
      481 accaccaagc catcgaaaat accgttgaag cagtccaatt agctagcgaa agcaacccag
      541 attatattga aattgatctt tggggaactg ttgatttaga attcatcgca tttcatgacc
      601 caactttgat taattgggcc ggactagact accgtcctca tgatttaact ttagcaagtt
      661 taatagaaac aacgatatcg gatgcagctg gacatactgc taaaatcgca agttttgacc
      721 aaattcttgc tgaagcaaca gctaaaaaac agaaactctt aatcgatttt aaaacatctg
      781 agttagatag tcctcaaatg gttgacaact ttatgaaaaa atatcaaaaa caattggaag
      841 atgagggaca tcagcttcag tctgctgatc ctcatttcat aaacgctatt ctaaagtatg
      901 ctccaaaatt tgaaacctac ttattgatga gcgcacctcc ggaaattgaa ttacctaacc
      961 tgactggcta tagtgttccc ttggatcaac tcactgatga tttacttaat tatattcgca
     1021 aatcgggaaa atctttctac gtatggactg tcaatactcc tgaaggagta caacaagcag
     1081 actccataga agtagatggc atcatcaccg actacccaac tcgtacacaa acagttttat
     1141 ctggtctatc acaagccaat aaatacacta aactgtatca agaacaatta caatatttta
     1201 aaatattccc catccaggaa taatgatttt gtcttaagag agatgcgaaa atgtccactt
     1261 gattatttag catccacttc gtttgtccga cttccacgtg ccacagttca gccctagact
     1321 gttggaggtg atttttagtg aactacatca tcttttcaac caccagttta actggtggtt
     1381 ttcattttgt tcttgacgaa agagaaatag aaggtatgaa aaaagcccgc tctttcgagc
     1441 aggcttgggc aatcaattat gcattgccac cgtttttctt aatgatttca tcttgtacag
     1501 attttggtac atcttcgtag tggtcaaata ccatcatgaa agtaccgcga ccttgtgttg
     1561 ctgaacgaag aacagttgcg taaccgaaca tttcagcaag tggcacataa gcacgaacga
     1621 tttgtgtgtt accacgagct tccataccat caacgcgacc acgacgtgca gtaacgtgac
     1681 ccataacgtc accaaggtta tcttctggtg cagtaatggt tacaagcatc attggctcaa
     1741 ggatagttgg ttgagctgat ttagctgctt ctttaagggc aagagatgct gccactttga
     1801 aggctgtttc agatgagtcg acatcgtggt atgaaccatc gtaaagctta gctttaacgt
     1861 caacgattgg gtaaccagca agaacaccgt tagccataga ttctacgaga cctttttcaa
     1921 ccgctgggat gaattcacgt ggaaccacac caccgacgat agcgttctcg aactcgaaac
     1981 ctttaccttc ttcgtttggt gtgaattcga tccaaacgtc accgaattga cctttaccac
     2041 cagactggcg tttgaagaaa ccacgagctt gagtagaagc gcggaatgtt tcacggtatg
     2101 atacttgagg agcacctacg tttgcttcaa ccttgaattc acgacgcata cggtcaacaa
     2161 ggacatccaa gtgcaactca cccataccag agataactgt ttcaccagtt tcaacgtttg
     2221 tttcaacgcg gaatgttgga tcttcttcag ccaatttaga aagggcaata cccatcttat
     2281 cttggtcagc tttagactta ggctcaacca tcaattggat aactggttct ggaacgtgga
     2341 ttgactcaag gatgattttt gctttttcat ctgtcaatga gtcaccagtt gtagtatctt
     2401 tcaaaccaac cgcagcggcg atgtcacctg cataaacagt ttcaatttct tgacggctgt
     2461 ttgcgtgcat ttgaaggata cgtccgatac gctcacgttt acctttagaa gtgttcaata
     2521 cgtatgagcc gctgttaagg acacctgagt agacacggaa gaatgtcaaa cgacctacga
     2581 atgggtcagt catgatcttg aaggcaagag ctgcaaatgg ctcctcatct gatgcatgac
     2641 gctcttcttc agcatctgta tctgggttaa cacctttaat agcagggatg tcaagtgggc
     2701 ttggaaggta gtcgataact gcatcaagca tcaactgaac acctttgttt ttgaaggctg
     2761 aaccacacaa tactgggaag aattcaacat tgatagttgc tttacggata gcggctttca
     2821 attcttcgtt tgtgatttct tcaccttcaa ggtatttcat catcaattct tcatcagttt
     2881 cagcaactgc ttcaaccaat ttttcacggt attcttcagc ttgctcaagg tattcagctg
     2941 gaatatcttc ttcaagaata tctgtaccaa ggtcgttagt atagatttca gctttcatct
     3001 tgattaagtc gatgatacca cggaactcgt cttcagaacc gattggcaat tgaattgggt
     3061 gtgcatttgc ttgaagacgc tcatgaagtg tgcttactga gtaaaggaag tcagcaccga
     3121 ttttatccat cttgttagca aatacgatac gtggaacacc gtattcagtt gcttgacgcc
     3181 atactgtttc agtttgtggc tcaacacctg attgtgagtc aagaacggtt accgcaccat
     3241 caagaacgcg aagtgaacgt tgtacttcga ttgtgaagtc cacgtgtcct ggtgtgtcga
     3301 tgatgtttac acggtggttg ttccattgag ctgttgtcgc agcagatgtg atagtgatac
     3361 cacgctcttg ctcttgctcc atccagtcca tttgtgatgc accttcgtga gtttcaccga
     3421 ttttgtggat tttaccagtg tagtaaagaa tacgctcagt tgtcgttgtt ttacccgcgt
     3481 caacgtgcgc catgataccg atattacgag ttttttctaa tgaaaattcg cgtgccatga
     3541 ggtttgttct cctataattt tagttttata ctttattata ccatatttta agaaaagcga
     3601 gtgggcaagt cccacccgct tgatttctta ctaatggtgt gaagtggatg aggtcatcct
     3661 caatccggtt tgtgatggtt gaacgagata ttcgtactat aatctcaatt gatttatata
     3721 gaactggctt aacgtcctaa tatcttatct tagttgaatt ttagctacaa atgtctgcca
     3781 aaaagataaa atctcctaga aactgatgtt tcttcgtcgc ttttcctatt ttggctagca
     3841 tttgcttaac gctaaaatat cctatcttac cagcggaagt gtgcgaatgc gcggtttgct
     3901 tctgccattt tgtgggtgtc ttcacgtttc ttaacagctg cacctgtgtt gtttgctgca
     3961 tccatgattt ctttcgcaag gcgatcaatc atagtgtgct caccacggtt acgagcgatt
     4021 gttaccaacc aacgaagacc aagtgttgta cgacgctctg gacgaacttc aactgggact
     4081 tggtagttag aaccaccgac acgacgtgca cgtacttcaa gtacaggcat gatgttttcc
     4141 attgctgttt caaatacttc aagtgcatcg ttaccagttg cttctttgat ttgatcaaag
     4201 gcaccgtaaa cgattgatgc agcagtacca cgtttaccgt ccaacataac acggttgatc
     4261 aaacgagtta ccaattttga gttatacaat ggatctggca atacttcgcg cttaggcgct
     4321 tgatttttac gactcattta tatttcccct ttcttagcct tttggacgtt tagtaccgta
     4381 tttagaacgg ccttgcttac gatcgtttac acctgcagta tcaagcgcac cacgaacgat
     4441 atggtaacgt acccctggaa ggtcctttac acgtccacca cgaagaagaa ccacactgtg
     4501 ttcttgcaag ttgtgaccga tacctgggat gtaagcagta acctcgataa ggttgctcaa
     4561 acgtacacga gcaaatttac gaagggctga gttaggtttt ttaggtgtca ttgttccgac
     4621 acgagttgca acaccgcgtt tttgtggtga tgaaacgttt gtttgaactt ttttacggct
     4681 gttgtaacca acgttcaaag ctggtgattt agatttttct actttagact tacgtggttt
     4741 acgtaccaac tggttaattg taggcatcta cattctcctg tatatatttt tatttttggt
     4801 gataaggcat tggtgacaac ccctatctgt gtgtactttt gcaacatttg tcagcacgtc
     4861 cctgtacact cttgagagac caaaagtaaa aagtaccgtc taatataata ccacagctag
     4921 aagaccttgt caaatagata tgtttgaaat tttcaagaaa aaac
//
LOCUS       DASGAC010000151         4935 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.153, whole genome shotgun sequence.
ACCESSION   DASGAC010000151 DASGAC010000000
VERSION     DASGAC010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4935)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4935)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4935
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.153"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(4..1347)
                     /gene="brnQ"
                     /locus_tag="U1335_001799"
     CDS             complement(4..1347)
                     /gene="brnQ"
                     /locus_tag="U1335_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HEM5232255.1"
                     /translation="MKKGALTGLLLFGMFFGAGNLIFPPALGVLSGENFWPAILGFVV
                     SGVGIAVVALIVGTLNPKGYVHEISRKISPTFATIYLVALYLAIGPFFAIPRTATTSF
                     EIGIAPLLSEANLGIWLFGFTVLYFVAAYLIALNPSQILNSIGRILTPVFAILIVILV
                     VLGIAKYGSTSPLPAAEAYSAGQAFGTGFIEGYNTLDALASIAFSVVAVNTLKQLGFS
                     SKKEYVSTIWSVGFVVALAFSALYVGLAFLGNHFPVPPDVLASKEIHKGVYVLSQVTQ
                     AIFGPSAQIFLAAMVIVTCFTTTAGLIVSSGEFFAERFPRFSYKVYATIFTLIGFGIA
                     NLGLSKIIAFSIPVLLILYPITICIVLITIVNKFVPLSTYGMQLTVGLVTALSLVEVL
                     AGQFNWTAVSKIISALPLAGQSLAWLLPALVGIVLSLFLPNKQESEVFEMGLKKY"
     gene            complement(1469..2686)
                     /gene="thiI"
                     /locus_tag="U1335_001800"
     CDS             complement(1469..2686)
                     /gene="thiI"
                     /locus_tag="U1335_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HEM5232256.1"
                     /translation="MNYSEIMIRYGELSTKGKNKMRFINKLRNNIKHVLSVYPEVTVY
                     FDRDRGHVYLNGADYQEVSASLKKIFGIQNFAPSYKIEKSVPALKEAVVEIMQSIYKE
                     GMTFKIAARRSDHSFELDSRDLNQVLGDAVFTAIPNVQVQMKSPDITLRVEIRPDAAY
                     ISHEEIKGAGGLPVGTSGKGTLMLSGGIDSPVAGYLALKRGVEIEAVHFASPPYTSPG
                     ALKKAHDLTRKLTAFGGNITFIEVPFTEIQEEIKEKAPEAYLMTLTRRFMMRITDRVR
                     EERGAMVIINGESLGQVASQTLESMQAINAVTNTPVIRPVVTMDKLEIIDIAQEIDTF
                     DISIQPFEDCCTIFAPDRPKTNPKIKNVEQYEARMDVERLVERAVAGIIVTEITPKEE
                     VKDEVDSLIEDLL"
     gene            complement(2688..3830)
                     /locus_tag="U1335_001801"
     CDS             complement(2688..3830)
                     /locus_tag="U1335_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008533866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM5232257.1"
                     /translation="MIYFDNAATTQVYPEVLKTYTEVATKIWGNPSSLHSLGSQATRI
                     LEASRKQIAELLGQDSKEIFFTSGGTEGDNWVIKGVAFEKAHLGKHIIVSAIEHPAVK
                     ESALWLKTQGFEVDLAPVNAQGFVDVSALESLIRPDTTLVSIMAVNNEIGAIQPIQEI
                     SQLLADKPTISFHVDAVQAIGKVPTERYLTDRVDFASFSGHKFHSVRGVGFVYVKAGK
                     KIAPLLTGGGQESDKRSTTENVAGIAATAKALRLTLDKAVDSQKRLAAMKQILVDELG
                     KYTAVTVFSGLEDFVPSIVTFGIKNIRGEVIVHAFEDHQIYISTTSACSSKAGKPAGT
                     LIAMGVPQKLAQTAVRISLDDDNDMGQIEQFLTIFKQIYQNTQKVR"
     gene            3942..4355
                     /locus_tag="U1335_001802"
     CDS             3942..4355
                     /locus_tag="U1335_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232258.1"
                     /translation="MNTRKNTNKKPAGLTNFQKYLTFIGSILGIITACITIYTFTVKP
                     ATSSTSPSTTISASSATSPSQSSSDNPLTEVQDLTSSSSETTSSTQTETSSSVESTAS
                     SSSTETSATQASETRTETSTDTEVTSGASETTSNQ"
     gene            4414..4848
                     /locus_tag="U1335_001803"
     CDS             4414..4848
                     /locus_tag="U1335_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232259.1"
                     /translation="MKYFIIRIPILVWLLLFSFIEIFLLASFLPEPFNTNSLLPIVIL
                     SSCAVRVSNEVKERHGQYTPFKELWWAVLAWIILGILFGLTVQAPLSKHLVFIIKAIL
                     GGIGYRLIERYAVYRYHYLQIMTTRQTGGLNKGYKPTSPASA"
BASE COUNT         1470 a         1145 c          951 g         1369 t
ORIGIN      
        1 ttttcaatat tttttcaacc ccatttcgaa aacttcgctc tcctgcttgt ttggtaagaa
       61 cagagagagg acgattccga caagagctgg taataaccac gctaatgatt gtccagccaa
      121 tggcagagct gagatgattt ttgaaacagc agtccagttg aattgtcctg ctaacacttc
      181 taccaatgac aaagctgtca ctagtcccac agttaattgc ataccataag tggaaagcgg
      241 tacaaatttg ttaacaatgg taatcaagac aatacagata gtaattggat agagaatcaa
      301 aagaaccgga atagagaagg caataatctt actcaaacca agattagcaa tcccaaaacc
      361 aatcaaagta aagatagtcg catatacttt gtagctaaaa cgtgggaaac gctcagcgaa
      421 aaattcacct gaagaaacaa tcaagccagc cgttgtcgta aagcaagtaa cgatcaccat
      481 tgcggccaag aaaatctgtg cacttggacc aaaaatagcc tgagttactt gagataaaac
      541 gtaaacgcct ttgtggattt ccttagatgc caatacatca ggcggaactg ggaaatgatt
      601 tccaagaaat gccaaaccga catatagtgc tgaaaaagcc aaggctacaa caaaaccaac
      661 agaccagatg gttgatacat attctttctt gcttgagaaa ccaagttgtt tcaaggtatt
      721 gactgctacg acactaaagg caattgaggc aagggcatca agggtgttgt atccttcaat
      781 aaatcctgta ccaaatgcct gtccagctga ataggcttct gctgctggta gtggactagt
      841 cgaaccatac ttggcaatac ccagcaccac caaaatcaca atcaaaatag cgaatactgg
      901 tgtcaaaata cgaccaatac tgttcaagat ttgtgacgga ttaagggcga ttaggtaggc
      961 tgccacaaag tagaggactg taaaaccgaa cagccaaatt ccaaggtttg cttcgctcaa
     1021 caatggcgca ataccaattt caaaggacgt tgtagctgta cgcggaatgg caaagaaagg
     1081 accgatagcc aaatacaagg caacaagata aatcgttgca aaagtcggtg aaatcttgcg
     1141 agaaatctca tgtacataac ctttggggtt taaggtaccg acaatcaaag caacgacagc
     1201 aataccgaca cccgatacga caaatcctaa aatagcaggc cagaaattct cacctgatag
     1261 cacaccaagt gcaggtggga aaatcaagtt tcctgcacca aaaaacatac cgaacagaag
     1321 taatcctgtt agggctcctt ttttcataat aactcctttg tatttttctg aagtcttatt
     1381 atatcataca aattcaattt ttccgaacga ttcgaactaa aaaatccagt aataactgga
     1441 tttaaatgta tgtcaaaaca attgaattct acagtaagtc ttcaatcaaa ctatccactt
     1501 cgtctttcac ttcctctttc ggtgtgattt cagttacgat aatcccagcc acagctcgtt
     1561 ccaccaagcg ttcaacatcc atacgggctt cgtattgctc gacatttttg attttagggt
     1621 tagtttttgg acggtcaggg gcgaagatgg tacagcagtc ctcaaatggt tgaatggaaa
     1681 tatcaaaggt atcaatttct tgagcaatat caatgatttc caacttgtcc atggtaacga
     1741 ctggacggat aacaggtgta tttgtcaccg cattgatagc ctgcatagat tccaaggtct
     1801 gacttgccac ttgtcctaga ctttcaccat tgataataac catggcacca cgctcttccc
     1861 gtactcggtc tgtaatccgc atcatgaagc ggcgtgtcaa ggtcatcaaa taagcttcag
     1921 gcgctttttc cttgatttct tcctgaattt ctgtaaacgg cacttcgata aaggtgatat
     1981 taccaccaaa ggcagtcaat ttacgagtca aatcatgggc ctttttaagt gcacccgggc
     2041 tagtataagg cggacttgca aagtgcacag cttcaatttc aaccccacgt ttgagcgcca
     2101 aataacccgc aactggcgaa tcaataccac cagacaacat aagcgttccc ttaccagatg
     2161 ttccaactgg cagaccgcct gcacccttga tttcttcatg ggaaatatag gctgcatcag
     2221 gacggatttc cactcgcaag gtaatatctg gtgacttcat ctgtacctga acatttggaa
     2281 tggctgtaaa aactgcatct ccaaggactt ggttgagatc acgactgtcc aattcaaaac
     2341 tgtggtcgct acgacgtgcc gcaatcttga aggtcatccc ttccttgtag atggactgca
     2401 taatctccac aaccgcctct ttcaaggctg ggacagactt ttcaatctta taagatggtg
     2461 cgaaattttg gatcccaaaa atcttcttca atgaagctga aacttcctga taatccgccc
     2521 cattcaaata gacatgacca cgatcacggt caaaataaac ggtcacttct gggtaaacag
     2581 aaaggacatg cttgatatta ttgcggagtt tgttaataaa ccgcatcttg tttttccctt
     2641 tagttgacaa ttcgccatag cgaatcataa tttctgaata gttcattcta ccttactttc
     2701 tgtgtgtttt gataaatttg tttgaaaatc gtgaggaatt gttcgatttg ccccatatcg
     2761 ttgtcatcgt ccaagctgat acggacggca gtttgagcca acttctgcgg aacacccata
     2821 gcaatcagtg ttccagctgg ttttccagcc ttggacgagc aggctgaggt ggtcgaaatg
     2881 taaatctggt ggtcttcaaa ggcatggacg atgacttcac cacggatatt tttaatcccg
     2941 aaagtcacaa tgcttggcac aaaatcctcc aatccagaaa agactgtcac agcagtatat
     3001 ttgcccaatt catccacaag gatctgcttc atggcagcca gcctcttctg gctatctacc
     3061 gccttgtcca aggtcaagcg gagcgcctta gcagttgctg caataccagc tacattttct
     3121 gttgttgagc gtttatcgct ttcctgtcct ccccctgtca atagcggagc gattttcttg
     3181 ccagctttga catagacgaa acctactcct ctgacagagt ggaatttgtg acctgaaaaa
     3241 ctagcaaaat cgactcggtc tgtcaaatac cgttccgttg gcaccttgcc gattgcctgc
     3301 accgcatcca cgtggaaaga gatggtcggt ttgtcagcta agagctggga gatttcctga
     3361 atgggctgaa tagcaccaat ttcattatta acagccatga tagaaaccag tgtggtatct
     3421 ggacgaatca agctttctaa ggctgaaaca tcaacaaaac cttgggcatt gaccggagcc
     3481 aaatccacct caaaaccttg cgttttgagc caaagtgctg attcttttac cgctggatgc
     3541 tcaatagctg acacgatgat gtgcttgccc agatgtgcct tttcaaatgc cactcccttg
     3601 atgacccagt tgtcaccttc cgtaccacct gaggtgaaaa agatttcttt gctatcctgg
     3661 ccaagcaatt ctgcgatttg cttgcgagat gcttccaaaa tacgggttgc ctgactgccc
     3721 agactatgga ggctagaggg gtttccccag atttttgtcg ccacttccgt ataggtcttg
     3781 agaacttctg gatagacctg tgtcgttgcc gcattatcaa aataaatcat tttttcattc
     3841 ctttgcttac aatagtccta ttttatcacg ttttcatgcc tttcgccaat ctttaagata
     3901 gttttaaact tcctatctta aactaaaggt ggaggtacat catgaataca cgtaagaata
     3961 caaataaaaa accagctggt ttaactaatt ttcaaaaata tttaaccttt atcggatcta
     4021 ttttagggat tatcactgcc tgcatcacta tctacacctt tacagtaaaa cctgcaacat
     4081 cctcaacatc tccaagtact accatttcag catccagcgc cactagcccc agccaatcat
     4141 caagcgacaa tccgttaaca gaagtacaag atttaacaag ttcaagctcc gaaacaacat
     4201 cctcaaccca aaccgagacc agctcttcag tagagtctac tgcctcttcc tcgtctacag
     4261 aaacgtctgc tacccaagct tcggagacaa ggacagaaac cagtactgat acagaggtaa
     4321 ctagtggggc atccgaaacg acttctaatc aatagcacaa aaatatttgt tttactttct
     4381 tggatttgat atactaaatc taggaggtgc tgtatgaaat actttattat caggatacct
     4441 attttagttt ggttattgtt attttcattc attgaaatct tcctgctagc atcattttta
     4501 ccagaaccgt ttaacaccaa ttctctcctt cccatagtta tcttatctag ctgtgcagtt
     4561 agagtatcta atgaagtcaa agaaagacat ggacaatata ctccattcaa agagttatgg
     4621 tgggcggtac tagcttggat tatcttgggt atccttttcg gattgactgt ccaggcaccc
     4681 ctatcaaaac accttgtctt tatcataaaa gctattttag gtggaatagg ctaccgcctt
     4741 attgaacgtt atgcagttta tcgctatcat tatttacaaa tcatgaccac ccgtcaaacg
     4801 ggtggtttga acaagggcta taagcccaca tcaccagcca gcgcctaaag acgctggctt
     4861 tcactttgtt caagcctcac tgcttttgac tcgtcactag cctcttaaag aggcattcgt
     4921 actacttgcc attat
//
LOCUS       DASGAC010000152         4930 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.154, whole genome shotgun sequence.
ACCESSION   DASGAC010000152 DASGAC010000000
VERSION     DASGAC010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4930
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.154"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(152..1591)
                     /gene="gatB"
                     /locus_tag="U1335_001804"
     CDS             complement(152..1591)
                     /gene="gatB"
                     /locus_tag="U1335_001804"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017770317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEM5232260.1"
                     /translation="MNFETIIGLEVHVELNTNSKIFSPSSAHFGEDPNANTNVIDWSF
                     PGVLPVLNKGVVDAGIKAALALNMDIHKEMHFDRKNYFYPDNPKAYQISQFDEPIGYN
                     GWIEIELEDGSTKKIRIERAHLEEDAGKNTHGTDGYSYVDLNRQGVPLIEIVSEADMR
                     SPEEAYAYLTALKEIIQYTGISDVKMEEGSMRVDANISLRPYGQEKFGTKTELKNLNS
                     FNYVRKGLQHEVERQAKILRSGGQIQQETRRYDESTGETILMRVKEGSADYRYFPEPD
                     LPLYEIDDSWIEEVRAELPVFPKARRAHYVENLGLTAYDAGQLTSTKALSDFFEAAVA
                     AGGDAKQVSNWLQGEVAQFLNAEGKTIEQIALTPENLVEMIALIADGTISSKIAKKVF
                     VHLAKEGGSAKAYVEKAGLVQISDPAVLIPIIHQVFADNEAAVADFKSGKRNADKAFT
                     GFLMKATKGQANPQVAQQLLAQELAKLLD"
     gene            complement(1591..3057)
                     /gene="gatA"
                     /locus_tag="U1335_001805"
     CDS             complement(1591..3057)
                     /gene="gatA"
                     /locus_tag="U1335_001805"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016466749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEM5232261.1"
                     /translation="MTFNNKTIDELHDLLVKKEISAVELTKATLEDIKSREGAVDAFL
                     TITEDAALAQAAALDENGIDAENVMAGIPLAVKDNISTKGILTTAASKMLYNYEPIFD
                     ATSVAQAYAKDMIIVGKTNMDEFAMGGSNENSAFKPTKNAWDQTKVPGGSSGGSAAAV
                     AAGQVRLSLGSDTGGSIRQPAAFNGIVGMKPTYGTVSRFGLIAFGSSLDQIGPFSQTV
                     KENAQLLNVISGHDVKDATSTINEIADFTSKIGQDIKGMKIALPKEYMGEGIDPQVKE
                     TILKAAKHLESLGAIIEEVSLPHSKYGVAVYYIIASSEASSNLQRFDGIRYGFRAEDA
                     TNLEEIYVKTRSQGFGEEVKRRIMLGTSSLSSGYYDAYFKKAGQVRTLIIQDFEKVFA
                     DYDLILGPTAPTVAFGLDTLNHDPVAMYLADLLTIPVNLAGLPGISIPAGFVEGLPVG
                     LQLIGPKYSEETIYQVAAAFEATTDYHKQQPVIFGGAN"
     gene            complement(3057..3359)
                     /gene="gatC"
                     /locus_tag="U1335_001806"
     CDS             complement(3057..3359)
                     /gene="gatC"
                     /locus_tag="U1335_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017644687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEM5232262.1"
                     /translation="MKISEAEVRHVAKLSKLEFSDQETAEFATSLSKIVDMVELLNEV
                     DTTGVAVTTTMADRKNVLRADIAQKGESREELFKNVPESQDNFIKVPAILDGGGDA"
     gene            complement(3576..4250)
                     /locus_tag="U1335_001807"
     CDS             complement(3576..4250)
                     /locus_tag="U1335_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HEM5232263.1"
                     /translation="MSEQFIPSVLSDLRQDIVQMPEVIKECSGIRIYGRRIRSVLFTT
                     DVSIIANHNADAILAVYPFTPSPAIIKSIMLVASVPVLAGVGGGLTTGMRSANMSLLS
                     ESEGAYAVVVNGPTDVKTIEAINKVVDIPIIYTVVSEKSDLTSRIKAGVDILNISCGI
                     ETPRVVKKIREAFPDFPIIATGGPTEDSIRRVIEAGANAVSYTAPSNGELFKGKMEKY
                     RKHAKD"
     gene            complement(4434..4781)
                     /gene="rplS"
                     /locus_tag="U1335_001808"
     CDS             complement(4434..4781)
                     /gene="rplS"
                     /locus_tag="U1335_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005590628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEM5232264.1"
                     /translation="MNPLIQSLTEGQLRTDIPSFRPGDSVRVHAKVVEGTRERIQIFE
                     GVVISRKGQGISEMYTVRKISGGVGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLRA
                     LQGKAARIKEIRR"
BASE COUNT         1406 a         1208 c          946 g         1370 t
ORIGIN      
        1 taactatcct ttaacagtca atacccgcgc taccttctaa tactttatac cgtttttaaa
       61 atatagcata aaaataagat aggagcacct agtttacaaa taacagtaaa aaccgctaag
      121 attcaatcct agcggttttc ttctattcat tttaatctaa caacttagcc aattcctgtg
      181 ccaagagttg ttgtgcaact tgtggattag cttgtccctt agtcgctttc atcaagaaac
      241 ctgtaaaggc cttatcagca ttgcgtttgc cagacttgaa gtcagctacg gctgcttcat
      301 tatccgcaaa gacttggtgg ataatcggaa tgaggacagc tgggtctgaa atctgtacca
      361 agccagcctt ctcaacgtaa gccttggcag agccgccttc tttggccaag tgaacaaaga
      421 ctttcttggc aatcttagat gaaatagtgc catccgcaat caaggcaatc atctcaacca
      481 agttttcagg tgtcaaggcg atttgctcaa tggtcttacc ttcagcattg aggaactgag
      541 ccacctcacc ctgcaaccag ttggacactt gtttggcatc gccacctgct gccactgctg
      601 cttcaaagaa gtcagacaga gctttagttg acgtcaactg accagcatcg taggcggtca
      661 agcccaagtt ttccacatag tgagcacggc gagcctttgg aaagactggc aattctgcac
      721 gaacttcctc aatccagcta tcatcaatct catagagtgg caggtctggc tcagggaagt
      781 aacggtagtc agctgaaccc tccttgacac gcatgagaat tgtttcacca gtagattcat
      841 cgtaacggcg agtttcctgc tggatttgac cacctgaacg caagattttg gcctgacgtt
      901 ctacttcatg ctgcaagccc ttgcgcacat agttgaagga gttgaggttt ttcaactcag
      961 tcttagtacc aaatttctcc tgaccatagg gacgaaggga aatgttggca tccacgcgca
     1021 tagacccctc ttccatcttg acatctgaaa tgccagtgta ttggataatt tccttgaggg
     1081 ctgtcaagta ggcataggcc tcctcaggcg aacgcatatc tgcttctgat acaatctcaa
     1141 tcaaaggcac accctgacgg ttgaggtcca cataagaata gccatctgtc ccgtgggtat
     1201 tcttaccagc atcctcttcc aaatgcgcac gctcgatacg gattttcttg gttgaaccgt
     1261 cttctagctc aatctcaatc caaccattgt agccaatcgg ctcgtcaaac tgggaaatct
     1321 gataggcttt agggttatca ggatagaaat agttcttgcg gtcaaaatgc atttccttgt
     1381 gaatatccat gttcaaggcc aaggcagcct tgattcctgc gtctacaaca cccttgttaa
     1441 gaacaggaag gacgcctggg aaagaccagt caatcacgtt ggtattggca tttgggtcct
     1501 caccaaaatg agcagatgaa ggtgagaaaa ttttcgagtt ggtattcaac tccacatgga
     1561 cttctagacc aataatcgtt tcaaagttca ttagttagca cctccaaaaa tcactggttg
     1621 ttgcttgtgg tagtctgtcg tcgcttcaaa ggcagcagcc acttggtaga tagtttcttc
     1681 tgaatatttt ggaccaatca actgcaagcc aacaggcaag ccttccacaa aacctgcagg
     1741 aatcgaaatc cctggaagac ctgccaagtt gacaggaatt gttagcaagt ccgccaagta
     1801 catagccaca gggtcatggt tgagcgtatc caaaccaaag gcaactgtcg gagcagttgg
     1861 ccccaaaatt aagtcatagt ccgcaaagac cttttcaaaa tcttggataa tcaaggtccg
     1921 cacctggcca gccttcttga agtaggcatc gtagtaacct gatgataagc tagatgtacc
     1981 taacataata cggcgtttga cttcctcacc aaaaccttgg ctacgggttt tcacgtaaat
     2041 ctcttccaag tttgtcgcat cttctgcacg gaaaccatag cggataccgt caaaacgctg
     2101 caagttagaa gaagcctctg atgaagcaat gatgtagtaa acagcaaccc catacttaga
     2161 atgtggcagg ctaacttctt caatgattgc tcccaagctt tccaagtgct tagccgcctt
     2221 gagaatggtt tccttgacct gcggatcaat cccttcgccc atgtattctt ttggcagagc
     2281 gattttcata cccttgatgt cctgaccaat cttgctagtg aagtcagcaa tttcattgat
     2341 ggttgatgtt gcatccttga catcatgacc agagatgaca ttgagcaact gggcattttc
     2401 cttaaccgtc tgtgagaatg gaccaatctg gtcaagagat gaaccaaagg caatcaaacc
     2461 aaaacgtgac accgttccat aggtcggttt cataccaacg ataccattaa aggctgcagg
     2521 ctggcgaatg gaaccgcctg tgtcagaacc gagtgacaaa cggacctgac cagcagcaac
     2581 tgcagctgcc gaaccacctg aggaaccacc aggaactttt gtctgatccc aagcattttt
     2641 agtcggtttg aaggcagagt tctcattaga accacccata gcaaactcat ccatgtttgt
     2701 cttaccgaca ataatcatat cctttgcata ggcttgggca actgatgtcg catcgaaaat
     2761 cggctcatag ttatagagca tttttgaagc tgccgtggtc aaaatcccct tcgtagagat
     2821 attgtccttg accgccaaag gaatccctgc cataacattt tccgcatcaa tcccattttc
     2881 atcaagggca gcagcctgcg ccaaggctgc atcttctgtg atagtcaaga aagcatccac
     2941 tgctccctca cggctcttga tgtcttccaa ggttgccttg gtcaactcaa ccgcagaaat
     3001 ctcctttttg acaaggaggt catgcaattc atcaatggtt ttattgttaa aagtcattag
     3061 gcatctcctc ccccgtctag aatagctggt accttgataa agttatcctg tgattcaggc
     3121 acatttttaa agagctcctc acggctctca cctttttggg caatatctgc acgtaaaaca
     3181 ttcttacggt cagccatggt tgtcgtcacc gcaacacctg tcgtatctac ttcattgagc
     3241 aattcaacca tatcgacaat cttgctcaaa cttgtcgcaa attccgctgt ttcctggtcc
     3301 gaaaattcca gcttagacag cttggcaacg tgacggactt cagcttcaga aatcttcatt
     3361 cttactttcc tcctaatgga aatctatctt ctcattatac catatttcca gcctcagaca
     3421 aaggtagaaa tgacctaata tgttacctat ttcctcctaa aaatccgttc tttaaattgc
     3481 gaagtattcc taatctcaca ccgtaaaacg ataaaaaaca gcaagtttca tcttgcaata
     3541 aaacttactg tttgcttagc ctatcttttt atgagctaat cctttgcatg tttgcggtat
     3601 ttttccattt tccctttaaa aagctcccca ttacttggtg ctgtatagga gacagcattg
     3661 gctccagctt cgataacccg acgaatagag tcctcagtcg gaccaccagt cgcaataatt
     3721 ggaaagtcag ggaaagcttc tcgaatcttc ttcacaaccc ttggcgtttc tataccgcaa
     3781 gaaatattta aaatatctac tccagcttta atccgtgagg ttaaatcaga cttttcagaa
     3841 acaacggtat aaatgatagg aatatctact accttattga ttgcctcaat tgtttttaca
     3901 tccgttggtc catttaccac aacagcgtat gctccctccg actcagacaa tagactcata
     3961 ttagctgaac gcatacctgt cgtcaagcct ccaccaacac cagccaagac tggaactgac
     4021 gcaaccaaca taatactttt gataatagct ggactgggcg taaatggata aacagccaaa
     4081 atagcatctg cattgtgatt ggcaataata gacacatctg ttgtaaataa gactgaacga
     4141 atgcgacgac cataaatacg aattccacta cattccttga taacctctgg catctgaaca
     4201 atatcctgcc gtaaatctga taaaacagat ggaataaact gttcgctcat ccgcaacctc
     4261 ctctatacta gcttcaataa tatatagtat aacatattat ttcatggaag atacacaaaa
     4321 acaatccatt ttaccactgc tttcacaatt tggtactctt tcaacagatt taaaaaaaag
     4381 agacagcttt cgctgcctcc cattctccga ccaaaatagt ctgtaggact atcttaacga
     4441 cggatttctt tgatacgcgc tgctttacct tgtaatgcac gtaggtagta caatttagca
     4501 cgacgtactt taccgtaacg tacgacttca atcttatcaa cacgtggagt gtggattggg
     4561 aatgtacgct caacacctac accgccagag attttacgga cagtgtacat ttctgagata
     4621 ccttgacctt tacgagagat aacaacaccc tcgaaaatct gaatacgctc acgagttcct
     4681 tcgacaacct tagcgtgaac acgaacagag tcaccaggac ggaaagaagg gatatcagta
     4741 cgaagttgac cttctgtcaa actttggatc aatggattca ttttattctc ctatctttgt
     4801 caatcttagg tgcttttaaa cccagcggat aaactgtatt tttgtgcgtc cattacacac
     4861 agactatatt atacaccaag taatcaccta tgtaaagcat tttgataaat ttatcatggt
     4921 caatcacacc
//
LOCUS       DASGAC010000153         4907 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.155, whole genome shotgun sequence.
ACCESSION   DASGAC010000153 DASGAC010000000
VERSION     DASGAC010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4907
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.155"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(37..1032)
                     /locus_tag="U1335_001809"
     CDS             complement(37..1032)
                     /locus_tag="U1335_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein jag"
                     /protein_id="HEM5232265.1"
                     /translation="MKFTGASVEEAIQNGLVELNIPRKKAHITVVAREKKGFLGFGRK
                     PAIVDIDVINETTVVKANQKAVRGVPDEINEQNEPVKSVSEATIDLGKVVAAVKEFEK
                     SGQTLDDDIKAQILKNEKEATTILEETGRIEILSEDLLTTTDATTSAKEDVNQEVVSE
                     NQADNFADLDIKIEPQYDIEQVVSEVTAYVQEILDDMDVEARIDTSHNRRTINIQVDT
                     NEPGRVIGYHGKVLKALQLLAQNFLYNRYERNFYITINVNDYVEHRAEVLQGYAQKLA
                     ERVLAEQEAYHTDPMSSSERKIIHRIISKMDGLTSYSEGSEPNRYVVVDIEGNHD"
     gene            complement(1052..1864)
                     /locus_tag="U1335_001810"
     CDS             complement(1052..1864)
                     /locus_tag="U1335_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002267318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEM5232266.1"
                     /translation="MKKKVKWAGLLVASLIVLTACGTGPVTSQSTDAWDRLIYWFASI
                     IQFLSINGQIGIGIILFTILIRTLLLPLFQIQMNSSRKMQELQPKLKKLQAEYPGTDM
                     ESRQQLYEATQALYKENGVSMRASMIPLFIQMPILLALFQALTRVEALKVGHFLWLNL
                     GEPDPLFILPIMAAVFTFLSSWLTNKSAIEKNMAMTIMTYAMPVVIFFFAVAAASGVA
                     LYWTVSNAYQVAQTLVFNNPFKIIAERQAKIDAEKERQAKIRRAQKKAQKKK"
     gene            complement(1848..2207)
                     /gene="rnpA"
                     /locus_tag="U1335_001811"
     CDS             complement(1848..2207)
                     /gene="rnpA"
                     /locus_tag="U1335_001811"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEM5232267.1"
                     /translation="MKKSYRVKRERDFNDIFTKGNNVANRRFVVYQLPKEQKHFRVGL
                     SVSKKLGNAVMRNKIKRRIRHILIECQHQLVADDFVIIARKGVEELSYQEMKQNLIHV
                     LKLAKLYQEGVVIEKES"
     gene            complement(2278..3672)
                     /gene="argH"
                     /locus_tag="U1335_001812"
     CDS             complement(2278..3672)
                     /gene="argH"
                     /locus_tag="U1335_001812"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEM5232268.1"
                     /translation="MEAKKLWGGRFEASLEEWVEEFGASIRFDQKLAKYDIQGSLAHV
                     KMLGQTGIISQAEAQVIQAGLEELLAGYEAGKLVFDVRNEDIHMNIESLLTEKIGSVA
                     GKLHTARSRNDQVATDMHLYLKDTLFQVVDKLTNLRQILVDLAQEHVETIMPGYTHLQ
                     HAQPISFAQHLLAYYNMFSRDSERFAFNMQHTNISPLGAAALAGTTFPIDRQMTSDLM
                     GFAKPYSNSLDAVSDRDFILEFLSNASILMMHMSRLCEEIINWCSHEYQFVTLSDTFS
                     TGSSIMPQKKNPDMAELIRGKTGRVYGNLVGLLTVMKSLPLTYNKDLQEDKEGMFDSA
                     ETILVSIDILAGMLQSMTVHKERMAQSTEKDFSNATELADYLASKGLPFRQAHEIVGK
                     LVLECSKAGYYLQDVPLERYQELSPVIGPDIYTALESETAVSRRNSLGGTGFESIRQQ
                     IQQAKAQIIASKGL"
     gene            complement(3686..4879)
                     /locus_tag="U1335_001813"
     CDS             complement(3686..4879)
                     /locus_tag="U1335_001813"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000412328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEM5232269.1"
                     /translation="MTKEKLILAYSGGLDTSVAIAWLKKDYDVIAVCMDVGEGKDLEF
                     IHDKALSIGAIESHVLDVKEEFAQEYVLPALQAHAYYEQKYPLVSALSRPLISKKLVE
                     MAHKTGATTIAHGCTGKGNDQVRFEVAIAALDPSLKVVAPVREWKWAREEEIIFAKEN
                     GVPVPADLDSPYSVDQNLWGRANECGVLENPWNEAPEDAFGITTAPENAPDTPEYVDI
                     EFQAGVPVAVNGEKLSLANLIQKLNVIAGKHGVGRIDHVENRLVGIKSREIYECPGAI
                     TLLTAHKEIEDLTLVREVSHFKPIVSNELSNLIYNGLWFNPATQALKAYLQATQSVVN
                     GTAKVKLYKGSAKVVARKSPNSLYDEDLATYTSADTFDQDAAVGFIKLWGLPTKVNAE
                     IHKKD"
BASE COUNT         1343 a         1139 c          911 g         1514 t
ORIGIN      
        1 ggttaatgaa acataaaaaa gaggactagc ctctttttaa tcatgatttc cttcaatatc
       61 tacaacgaca tagcggttcg gctcgctacc ttctgaatag cttgtcaagc catccatttt
      121 agaaataata cggtggataa ttttacgctc actgctagac attggatccg tatggtaggc
      181 ttcttgctca gccaagacac gttctgccaa tttttgtgcg tagccttgaa gaacctctgc
      241 gcggtgttct acatagtcat tcacattgat agtaatgtag aagttacgct catagcgatt
      301 atataggaag ttctgagcca aaagttgcaa ggctttcaaa acttttccgt gataaccgat
      361 aacacgacct ggttcattgg tatccacttg aatattgatt gtacggcgat tatgacttgt
      421 atcaatacgc gcctcaacat ccatatcatc cagaatttct tgtacataag ctgtcacttc
      481 cgaaacaact tgttcaatat catactgggg ctcaatctta atatctaaat cagcaaaatt
      541 atctgcttga ttttctgaga cgacttcttg atttacgtct tccttagcag atgttgttgc
      601 atctgtagta gttagcaaat cctctgaaag aatttcaatc cgacctgttt cttccaaaat
      661 cgttgtcgct tctttttcat ttttcaagat ctgcgcttta atatcatcat caagcgtttg
      721 accagacttt tcaaattctt tcaccgctgc aacaactttt cctaggtcaa tcgtagcttc
      781 tgaaacactt tttactggtt cattttgttc attaatttca tctggaacac cgcgaactgc
      841 tttctgatta gccttaacaa ccgttgtttc attgataaca tcaatatcca caatcgctgg
      901 ctttctaccg aaaccaagga aacctttttt ctcacgcgca accacagtaa tatgtgcttt
      961 ttttcgagga atatttagct ctaccaagcc attctggatg gcctcttcaa cacttgctcc
     1021 tgtaaatttc atcttctctc tcctagtttt cctatttctt tttctgtgct tttttctgtg
     1081 cccgtcggat ttttgcctga cgctcttttt ccgcatcaat tttcgcttga cgctctgcta
     1141 ttattttaaa aggattattg aacaccaagg tttgagcaac ctgataggca tttgacactg
     1201 tccaatacaa agccacccca ctagcagctg ccacagcaaa gaaaaaaatc accacgggca
     1261 tggcataggt cataattgtc atagccatat tcttctcaat tgctgattta ttggtcaacc
     1321 atgagctgag gaatgtaaac actgcagcca taatcggcaa aataaagagc ggatccggct
     1381 ccccaagatt taaccaaagg aagtgaccta ctttcaaggc ttcaacacgc gtcagagctt
     1441 gaaagagggc caaaaggatt ggcatttgaa taaagagcgg aatcatagac gctctcatgc
     1501 tgacgccatt ctctttgtag agagcttgcg ttgcttcata aagttgctgg cgactttcca
     1561 tatccgttcc tggatactcc gcttgcaact ttttcagctt aggttgaagc tcctgcatct
     1621 tccgtgagga attcatctgt atttggaaca acggcaacag aagggttcga attaaaatgg
     1681 taaaaagtat aataccgatt ccaatttgac cgttgataga taggaactga ataatgctgg
     1741 caaaccagta aattaatcta tcccacgcat ctgtagattg actggtcact ggccctgttc
     1801 cgcaggctgt taaaacaatt agagatgcta ccagtagacc tgcccattta actttctttt
     1861 tcaatcacaa caccttcctg gtatagttta gctagtttca aaacatggat gaggttttgc
     1921 ttcatttctt gataggacaa ttcctctaca ccttttcgag caatgataac aaagtcatct
     1981 gctaccagtt gatgttggca ttcaattaag atgtgacgaa tcctgcgctt aatcttattt
     2041 cgcatgacag cgtttcccaa ttttttgctg acagataaac ctactcggaa atgcttttgc
     2101 tctttaggta attggtagac aacaaacctc cgattggcga cattgtttcc ttttgtaaaa
     2161 atgtcattaa aatctcgttc acgcttgaca cgatagcttt ttttcaaact gccactccat
     2221 ctttcaaaat tacttctatt ataccataaa attcaaaaaa gccaataaac ataccgttta
     2281 gaggcctttc gaagcaatta tttgtgcttt tgcttgctga atttgctggc gaatggattc
     2341 aaatccagtt ccacctagcg aatttctgcg tgaaacggct gtttccgatt ctaaagctgt
     2401 ataaatatcc ggtccaatga caggcgacag ctcttgataa cgttccaaag gaacatcttg
     2461 taaataatag cctgccttgc tgcattctaa taccaattta cctacaatct catgcgcctg
     2521 gcggaagggt agccccttgc tggccaaata atctgccaac tctgtcgcat ttgaaaagtc
     2581 cttctctgtc gattgagcca tcctttcctt atgaactgtc atagattgca acatccctgc
     2641 caaaatatcg atagatacta aaatcgtttc cgcactatca aacatgcctt ccttgtcttc
     2701 ttgcaagtcc ttattatagg ttaaaggtag ggatttcatg actgtcagta ggccaactaa
     2761 gttcccataa actctacctg tttttccccg aatcaattct gccatatctg gatttttctt
     2821 ctgtggcatg atggaagaac ctgttgaaaa ggtatcagat aaggtaacaa attggtattc
     2881 atgtgaacac cagttaatga tttcttcaca caaacgcgac atgtgcatca tgagaatgct
     2941 ggcatttgag agaaattcca ggataaaatc acggtcagac acagcatcaa gagaattgct
     3001 gtaaggcttg gcaaatccca ttaaatccga cgtcatctga cggtcaatgg gaaaggttgt
     3061 ccctgccaag gccgccgcac caagtgggga tatatttgta tgctgcatgt tgaatgcaaa
     3121 gcgctcactg tctcggctga acatgttgta ataggctaac aagtgctgag caaaactaat
     3181 gggctgggca tgttgcaagt gggtatagcc gggcatgatt gtttccacat gctcctgtgc
     3241 aaggtctacc aaaatctgac gtaggttggt caatttgtct acaacttgaa agagtgtatc
     3301 cttcagatag aggtgcatat cggtcgctac ttgatcgtta cgagaacgag ctgtgtggag
     3361 tttacctgca actgagccta ttttctccgt caatagactt tcaatattca tgtgaatgtc
     3421 ttcgttacga acatcaaaca ctaacttgcc agcctcatag cctgctagca attcttccaa
     3481 accagcttga atgacctgag cctcagcttg agagataata ccagtttgcc ccagcatctt
     3541 gacatgggct aaagaaccct gaatatcata cttggccagt ttttgatcaa atcggatgga
     3601 agctccgaat tcttctaccc attcctcaag actggcttca aagcgaccac cccataattt
     3661 ctttgcttcc atacattcct actttctagt cttttttatg aatttctgcg tttaccttag
     3721 tcggcaagcc ccaaagcttg ataaatccga ctgccgcgtc ttgatcaaaa gtatctgcac
     3781 tggtataagt tgctaagtct tcatcataaa gagaatttgg tgatttccga gcaaccactt
     3841 tggctgaccc cttatacaat ttcacttttg ctgtaccatt cacgactgat tgagttgctt
     3901 gcaaataagc tttcaaggcc tgggttgctg gattgaacca caagccattg taaatcaagt
     3961 tagagagttc atttgaaaca atcggtttga aatgcgatac ttcgcgcacc aaggtcaaat
     4021 cttcaatttc cttgtgagct gtcaagaggg taatagctcc tggacactcg taaatttccc
     4081 gtgacttgat cccaactaga cgattttcca catggtcaat ccggcctaca ccatgcttac
     4141 cagcaatgac attgagtttt tgaatgagat ttgccaggct gagcttttct ccatttacag
     4201 caacgggtac acccgcctga aactcaatat cgacatactc aggagtatct ggtgcatttt
     4261 ctggtgcagt tgtaatacca aaagcatctt ctggcgcttc attccatgga ttttccaaga
     4321 ctccacactc attggcacgg ccccaaagat tttggtcaac ggaataagga ctatccaaat
     4381 ctgctgggac tggtacacca ttttccttgg cgaagataat ttcttcttca cgcgcccatt
     4441 tccattcccg aacaggggct acgactttca agcttggatc tagggctgca atggctacct
     4501 caaaccgcac ctggtcattt cccttaccag tacaaccgtg ggcgatagtg gttgctcctg
     4561 tcttatgagc catttccacc aactttttag aaatcaaggg acgactgaga gctgatacca
     4621 gcggatattt ttgctcataa taggcatgag cttgcagggc tggtaggaca tattcttgag
     4681 caaattcttc tttcacatcc aacacatggg actcaatggc accaatggac agtgctttat
     4741 catgaatgaa ttcaagatct ttcccctcac ctacatccat acaaaccgca atgacatcat
     4801 agtctttttt caaccaagca atcgcaactg aagtgtctaa tccacctgaa taggctaaaa
     4861 tcaatttttc ttttgtcata agcaatctca tttcttttta tttttat
//
LOCUS       DASGAC010000154         4895 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.156, whole genome shotgun sequence.
ACCESSION   DASGAC010000154 DASGAC010000000
VERSION     DASGAC010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4895
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.156"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(104..736)
                     /locus_tag="U1335_001814"
     CDS             complement(104..736)
                     /locus_tag="U1335_001814"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEM5232270.1"
                     /translation="MTLATEIASHLLDIKAVHLRPEKPFTWASGIKSPIYTDNRITLS
                     YPETRNLIEDGFVQRIEEEFPEVEVIAGTATAGIPHGAIIADRMNLPFAYIRSKPKEH
                     GVGNQLEGRIVKGQKMVVIEDLISTGGSVLDAVAAAEREGADVIGVVAIFTYELPKAE
                     RNFDNAGVKLVTLSNYSELIKVAKVQGYINADGLNLLKKFRQNQESWLED"
     gene            complement(860..1201)
                     /locus_tag="U1335_001815"
     CDS             complement(860..1201)
                     /locus_tag="U1335_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003042579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic pyrophosphatase"
                     /protein_id="HEM5232271.1"
                     /translation="MVDKVYQIIIDRPLGYIDKFGNQYPINYGYVPNLLAGDSEAQDA
                     YIISKGVQQPLTSFEGKLVAIIHRRDDVEDKWVLTGLDEKLTVTEIKEKTNFIESILI
                     HGLKWWTRRSL"
     gene            complement(1191..1886)
                     /gene="pyrF"
                     /locus_tag="U1335_001816"
     CDS             complement(1191..1886)
                     /gene="pyrF"
                     /locus_tag="U1335_001816"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEM5232272.1"
                     /translation="MKETRPIIALDFAGKEEVQSFLEQFPPDEKLYVKVGMELYYAEG
                     PGIINYLKGCGHSIFLDLKLHDIPNTVESAMRVLANLGVDMTNVHAAGGVEMMRAARR
                     GLGKDAVLIAVTQLTSTSEEQMRTDQNIQTSLQEAVVHYAQRAQEAGLDGVVCSAHEV
                     ALIKDATSSDFVCLTPGIRPTGGEVGDQKRVMTPADAARIGSDYIVVGRPITKSEHPY
                     QTYLSIKEEWNRG"
     gene            complement(2051..2992)
                     /locus_tag="U1335_001817"
     CDS             complement(2051..2992)
                     /locus_tag="U1335_001817"
                     /EC_number="1.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HEM5232273.1"
                     /translation="MTKRLAISLPGLDLKNPIIPASGCFGFGQEYADYYDLNQLGSIM
                     IKATTRHPRYGNATPRVAETPAGMLNAIGLQNPGVDVVLSEKLPWLEQHFPDLPIIAN
                     VAGFSNEEYAYVSGKISQAPNVKAIELNISCPNVDHGNNVLLIGQVPELAYQAVKAAV
                     EASSVPVYVKLTPSVADITLLAKAAEDAGATGLTMINTLVGMRFNLKTRQPILANGTG
                     GMSGPAVFPVALKLIRQVAQMTDLPIIGMGGVDTADKAIEMMVAGASAIGVGTANFTD
                     PFACPKIIQDLPKRMEVYGIDTLENLRQEVRESLGKR"
     gene            complement(3002..3892)
                     /locus_tag="U1335_001818"
     CDS             complement(3002..3892)
                     /locus_tag="U1335_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014635980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase electron transfer
                     subunit"
                     /protein_id="HEM5232274.1"
                     /translation="MINRANTAFFSCNLASQQGFFSISTFLFSVSLLYRIGEKMILKE
                     QMLLVDQVQLAPRIFAMTLQGDMVQDMKMGQFIHIRVPDDSMLLRRPISISEIDRNKS
                     QCRIIYRVEGQGTEVFSKMTVGQYLDVMGPLGKGFEVDFLKEGDRILIIGGGIGVPPL
                     VEVAKQAALRGVKVTSVIGFATKEAVILEEELASYGVVYVTTDDGSYGRKGNVATVVE
                     ELTNEFAAIYSCGAPAMMNYVDQRFQEHPHAYISLEARMACGMGACYACVVKPKEGQE
                     HENKRVCKEGPVFATGSLIL"
     gene            3989..>4895
                     /locus_tag="U1335_001819"
     CDS             3989..>4895
                     /locus_tag="U1335_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003076507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM5232275.1"
                     /translation="MRIQQLYYIIKIAETGSMNEAAKQLFITQPSLSNAVRDLEKEMK
                     IKIFFRNSKGITLTKDGMEFLSYARQIVEQTELLEDRYKNPNAKRQLFSVSSQHYAFV
                     VNAFVSLLKETEMEDYELFLRETRTWEIIDDVKNFRSEIGVLFLNHFNRDVLLKLLDD
                     NRLSYTTLFTAKPHVFVSKTNPLAQRKSITLDDLVDFPYLSYEQGIHNSFYFAEEILA
                     QEHHKKSIVVSDRATLFNLLIGLDGYTIATGILNSNLNGDNIVSIPLEFDDEIELVYI
                     QHEKALLSDMGEKFINYLLEEVKFDQ"
BASE COUNT         1403 a         1202 c          878 g         1412 t
ORIGIN      
        1 cactgtattt cctctaaaaa ttgcatttaa tgacttagat aaaatgttta gtaaatcgct
       61 tctttttaat gaatcattta cttcaataat ttttactggt ttcctaatct tctaaccaac
      121 tttcttgatt ttgacggaac tttttaagca gattcaaacc atctgcattg atatatccct
      181 gtacttttgc gaccttgatt aactctgaat aattgctgag tgtcaccaac ttcacgccag
      241 cattatcaaa atttcgctct gcttttggta attcgtaagt aaaaatggcc accactccga
      301 taacgtctgc accttcgcgc tctgccgctg caacagcatc cagtacagaa ccacctgttg
      361 aaatcaaatc ttcaatgacc accatttttt gacccttgac aatgcgacct tccaactgat
      421 taccaacacc atgttctttt ggtttgctac gaatataggc aaagggcaaa ttcatacggt
      481 cagcaataat agctccgtgt gggatacctg ctgtcgcagt acctgcaata acttcgactt
      541 ctggaaattc ttcttcgata cgctgaacaa agccatcttc aatcaagttc cgtgtttcag
      601 gataagaaag tgtaatgcgg ttgtctgtat aaatcggaga tttaatacct gatgcccatg
      661 taaatggctt ttcagggcgc agatgaactg ccttaatgtc caacaagtgt gatgcgattt
      721 ctgttgctaa tgtcataata gacctccttc taaatgcgtg ctattccaac atgaccatcc
      781 cgccgaatag cctgtcactc ctaaagtatt ggttcaatct atgaacccta caaaaactat
      841 atttatccct gttgaatact tacagacttc tcctagtcca ccatttcaat ccatgaatca
      901 aaatactttc aatgaaattg gttttctctt ttatttctgt cacggtaagt ttttcatcaa
      961 gacctgtcag aacccattta tcctcaacat catctctgcg atgtataatc gcgaccaatt
     1021 tcccctcgaa agatgtcaaa ggctgctgaa cacctttgga aataatgtaa gcatcttgcg
     1081 cttcactatc tccagccaat agatttggaa catagccgta attgatgggg tactggttgc
     1141 caaatttatc aatatatcct agaggtctat cgattataat ctgataaacc ttatccacga
     1201 ttccactcct ctttaataga caaataggtc tggtaaggat gttctgattt tgtaatcggg
     1261 cgacctacca caatgtaatc actaccgatt cgagcagcat ctgctggtgt cataactcgt
     1321 ttctgatcgc ctacttcacc gccagtcgga cgaatccctg gcgtcaggca cacaaaatca
     1381 gaactcgtag catctttaat caaagccacc tcatgcgctg aacaaaccac cccatcaaga
     1441 ccagcttctt gtgctctttg agcataatga acaaccgctt cctgcaaact agtctgtata
     1501 ttctggtccg ttctcatctg ctcctctgag gtagaggtca actgagtgac cgctattaaa
     1561 acagcatcct tacccaatcc ccttcgtgct gcccgcatca tctcaacacc accagcagcg
     1621 tgaacgttgg tcatatccac acctaggttt gccagaaccc gcatggcaga ctcgacggta
     1681 ttaggaatat catgcagttt caaatctaga aaaatactgt gaccgcagcc tttcaaataa
     1741 ttgataatac ctggtccctc cgcataatac aactccattc caacctttac atagagtttc
     1801 tcatctggtg ggaactgttc cagaaaagac tgaacttctt ctttacctgc aaagtcaagg
     1861 gcaataattg gtcttgtttc tttcataaaa tcctttcatt tacacaaaaa tccctgccaa
     1921 atcggtcagg gatgtgcacg aattcagctt gaaaatcacc tttcaagtat attacatggc
     1981 accttcctag cctctctgga cttagttaaa ggagatattt tctttatatt actcttttat
     2041 tttacctttg tcaacgctta cccaagcttt ctctaacttc ttggcgtaaa ttttctaagg
     2101 tgtcaatacc ataaacttcc atgcgttttg gcaagtcttg aataatcttt ggacaagcaa
     2161 atgggtctgt aaagttggct gttcctaccc caatggctga agctcctgca accatcatct
     2221 ctatagcctt gtccgccgta tccacaccac ccataccaat aatcggtaaa tcagtcatct
     2281 gagcaacctg acgaatgagt ttgagagcaa ccggaaaaac tgctgggcct gacattcctc
     2341 ctgtaccatt tgccaagatt ggttgtcgag ttttgagatt gaatcgcata ccaaccaagg
     2401 tatttatcat cgtcaagcca gtcgctccag catcctcagc agccttggcc aacagggtta
     2461 tgtctgccac acttggtgtc aacttaacgt aaacaggtac agatgaggct tcgactgctg
     2521 cttttactgc ttgataggct aattctggca cctgtccaat caagagaaca ttgttgccat
     2581 ggtccacatt gggacaggaa atgttgagct cgatggcttt tacatttgga gcttgtgaaa
     2641 ttttccctga cacataggca tattcttcat tggaaaaacc tgctacgttg gcaatgattg
     2701 gcaagtctgg gaaatgctgt tccaaccagg ggagtttttc ggataagact acatcaacac
     2761 ccggattttg aagtccaatg gcattgagca tacctgctgg tgtctcggct acacggggag
     2821 tcgcattgcc ataacgagga tgacgggtag tcgccttaat cataatggat ccaagctggt
     2881 taaggtcata ataatctgca tactcctgac caaaaccgaa gcagccagag gctggaatga
     2941 tgggattttt caagtccaag cctggtaagg aaatcgctaa tcgttttgtc atatcaacct
     3001 cctataaaat cagactacca gtcgcaaaga ctggaccttc cttgcagaca cgcttgttct
     3061 cgtgttcttg tccctctttg ggtttgacaa cacaggcata gcacgccccc atcccgcaag
     3121 ccatcctagc ctccagtgaa atgtaggcat gaggatgttc ctgaaagcgt tggtcaacat
     3181 agttcatcat agctggcgcc ccacatgagt aaatggctgc aaactcgttt gtcagctctt
     3241 caacgaccgt tgcgacattc cccttacgcc cataggaacc atcatccgtt gtgacataga
     3301 ccaccccata acttgccagc tcctcttcca aaatgacggc ctctttggtg gcaaagccaa
     3361 tgactgacgt gaccttgaca ccacggagcg cagcctgttt tgctacttcc accaagggag
     3421 gaacaccgat tccccctcca atgatgagaa tgcggtcacc ttctttgaga aagtctactt
     3481 caaacccttt cccaagcggt cccatgacat ccaaatactg cccaacagtc attttcgaaa
     3541 agacttccgt cccttgacct tccactcggt aaataatccg acattgagac ttattcctat
     3601 caatctcgga aatagatatt ggtctccgca agagcatgga atcatctgga acacgaatat
     3661 ggataaactg acccattttc atatcttgga ccatatcacc ctgcaaggtc atagcaaaaa
     3721 ttcgtggcgc tagttggact tggtccacca gtaacatctg ttcttttaaa atcatctttt
     3781 ctcctattct atataacaat gacacagaaa acaagaaagt cgatatagag aaaaaacctt
     3841 gctggctagc aaggttacac gaaaagaagg cagtatttgc cctatttatc acgttccctt
     3901 cttcgcctct ctggactcag ttaaaggata tattttcagc attatacatt ttttagaata
     3961 atttgtcaaa tcatgttaca atagaggtat gagaatccaa caattatact atattatcaa
     4021 aattgcagaa acaggcagta tgaatgaggc tgccaaacaa ctcttcatta cccaacccag
     4081 cctttccaac gctgtacgag acctagaaaa agaaatgaaa attaaaatct ttttccgtaa
     4141 ttctaagggc attaccctga caaaggatgg catggagttt ctttcctacg ctcgtcaaat
     4201 tgttgaacag acagagcttt tagaagatcg ctataaaaat ccgaatgcaa aacgccaact
     4261 cttcagcgta tcttcccaac actatgcctt tgtggttaac gcctttgtct cgcttttgaa
     4321 agagactgaa atggaggatt acgaactctt cctacgtgaa acacggacct gggaaatcat
     4381 tgatgacgtt aagaatttcc gctcagaaat cggagtgctt ttcctcaacc atttcaaccg
     4441 tgatgttctg ctgaaacttt tggatgacaa tcgactatcc tatacaactc tcttcactgc
     4501 caaaccacat gtatttgtca gcaaaaccaa tcctttggca caaagaaagt caatcactct
     4561 cgatgatttg gtagatttcc cctatctcag ctacgagcaa ggtattcaca actccttcta
     4621 ctttgcagaa gaaattctag cccaggaaca ccataaaaaa tcgattgtcg tatctgaccg
     4681 tgccacactc ttcaatctct taatcggtct agatggctat acaatcgcaa caggtatcct
     4741 caattcaaat cttaatggag acaatattgt atcaattcct ctggaatttg atgatgaaat
     4801 cgaattggtc tatatccaac acgaaaaggc attgctgtcc gacatgggag aaaaattcat
     4861 caattaccta cttgaagagg taaaattcga ccaaa
//
LOCUS       DASGAC010000155         4867 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.157, whole genome shotgun sequence.
ACCESSION   DASGAC010000155 DASGAC010000000
VERSION     DASGAC010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4867
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.157"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            19..846
                     /gene="xth"
                     /locus_tag="U1335_001820"
     CDS             19..846
                     /gene="xth"
                     /locus_tag="U1335_001820"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006596696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEM5232276.1"
                     /translation="MKLISWNIDSLNAALTAESPRALLSRAVIDTLVTEDADIIAIQE
                     TKLSDKGPTKKHLEILESYFPGYANTWRSSVEPARKGYAGTLFLYKNHLTPTITFPEI
                     GAPTTMDSEGRIITLEFDDFYVTQVYTPNAGDGLKRLADRQIWDVQYADYLAKLDSHK
                     PVLATGDYNVAHKEIDLANPASNRQSPGFTDEEREGFTNLLAKGFTDTFRHLHGDVLN
                     AYTWWAQRSRTSKINNTGWRIDYWLVSDRIADKVTKSDMIDSGTRQDHTPIVMEIEL"
     gene            complement(939..1790)
                     /locus_tag="U1335_001821"
     CDS             complement(939..1790)
                     /locus_tag="U1335_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class C sortase"
                     /protein_id="HEM5232277.1"
                     /translation="MKLKIVGYLLMIVGLLLPLLLFSNMTVHEVREFFAYQSYKKSES
                     GFSKKEEEIIEHYQEVVRSGQLATVDPFAETRKDEQSVSDFGDTIIGYVSIPSLEIRQ
                     PIRVGASDSHLDQGVAVVSGTDLPFGGRDRRSVLAGHRSWYSDLRFFRLNEMREGDEI
                     FVEIGEKVVTYRVKNTEIIKATDWQKLLPIEKQDVLTLLTCDPLVPPFDYRLLVNAYR
                     YHDSSEQAVSASEEKRQSSQAVLESYRKKGVSFIAYLTLFGWFLFVYLAYKLGRLVRE
                     CRVAKVR"
     gene            complement(1787..2644)
                     /locus_tag="U1335_001822"
     CDS             complement(1787..2644)
                     /locus_tag="U1335_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class C sortase"
                     /protein_id="HEM5232278.1"
                     /translation="MMKNLLESNRFLQKKLVLRLIFVLGLLITLYPLCSHLYYRYEAD
                     QEVQEFYQLAKDLPTQDVLNRLELARAYNKTLNPRKLQDPYSEEEKAGLAEYARMLEV
                     KEKIGYVEIPKLNEKIPVYAGTSEEVLQKGVGHLEGSSLPVGGANSHTVLTAHRGLPT
                     ASLFTNLDQLKLGDRFYIHNIAEILAYEVDQILVVEPSDFEPVLVVEEKDYATLLTCT
                     PYMVNSHRLLVRGHRIPYVPGVHEEEEPGFFVDRMLLSYLVAALLLILLLAGYLLFRR
                     RKATRRRRS"
     gene            complement(2641..3471)
                     /locus_tag="U1335_001823"
     CDS             complement(2641..3471)
                     /locus_tag="U1335_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class C sortase"
                     /protein_id="HEM5232279.1"
                     /translation="MRKGKKKNNLLFYLIFLIGFGILLYPHISNFYYRYEATHIVTDF
                     DQAKSSLESAEIKQRLDLARAFNESLHNVLAEDPYSRSRHEAGRAEYARMLEIHERIG
                     HVEIPKIEVDIPMYAGTSEEVLQKGIGHLEGTSLPVGGQNTHSVLTAHSGLPKARLFT
                     DLHRLKLGDEFYIHNIGDVLAYEVDQILVVEPSDFSQLLVVPNQDYVTLLTCTPYMVN
                     THRLLVRGHRIPYVEEEHRKASDQAEKRILIRYLLYALGMLVAIGLIFVLTKRKRRKK
                     "
     gene            complement(3671..4621)
                     /locus_tag="U1335_001824"
     CDS             complement(3671..4621)
                     /locus_tag="U1335_001824"
                     /inference="COORDINATES: protein motif:HMM:TIGR01784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HEM5232280.1"
                     /translation="MTKFRHSINPMIDIVAKKIFNDHEITIDFIETFLGFRPKSVQIL
                     NGTIADLKKEREGYFSTTVDILARLDDGTQVIIEIQVVHQHSFIKRLWTYSCQHLVKD
                     LPNVRDKVKRTHDMYDKISPVYSIALVATQYFDDKQPIHSFVLTAEENGQVLEIPFGE
                     QGEMKKPFEMVIIELNKLSEGKLATNQRLWMEFFANREFSQQQTDAISRAEHLLDRNT
                     WTEEERKMIDQLAYNAANHFGELETSFILGRKRGQEEGMAQGLQKGRAEGMLDGQLKV
                     ARQMLVKNFTDELIKELTGLSQEDLDGLKTGVLDVTKADF"
BASE COUNT         1428 a         1206 c          905 g         1328 t
ORIGIN      
        1 gactagaaaa ggaaaattat gaaactcatt tcttggaaca ttgattccct caatgctgct
       61 ctgacagctg aatccccacg cgccctatta tcacgcgcag tcatcgatac acttgtgaca
      121 gaagacgctg atattatcgc cattcaggaa acaaaattgt cagataaggg accgactaaa
      181 aagcatctag aaattttgga aagctacttc cctggatatg ccaatacctg gcgttcatct
      241 gtagaaccag ctcgcaaagg ctatgctggt acgctcttcc tctacaaaaa ccatctaact
      301 ccaaccatta ccttccctga gattggtgct ccaacaacca tggattctga agggcgcatc
      361 attacgctgg aatttgatga cttctatgtc acacaagttt atacgccaaa tgctggcgat
      421 ggcttgaaac ggcttgccga ccgccaaatc tgggacgtcc agtatgctga ctacttagca
      481 aaacttgata gccacaaacc tgttcttgca acaggtgact acaacgttgc tcacaaggaa
      541 attgacctgg ccaacccagc cagcaaccgc cagtcaccag gatttacaga cgaagaacgt
      601 gaaggattta caaacttgct agccaagggt ttcactgata ccttccgcca cttgcacggt
      661 gatgttctca acgcttatac ttggtgggca caacgtagcc gcaccagtaa aatcaacaac
      721 acaggctgga gaattgatta ctggcttgtc agcgaccgca tcgccgacaa agtaaccaag
      781 tcagatatga ttgactcagg tactcgtcaa gaccacacac caattgttat ggaaattgag
      841 ctataaataa tacagttctc caaacaaaaa gacttagaac agccatcaga aacggtggtt
      901 ctctaagtct tttttcttgt attcctgtta cactatacct atcgtacttt agcaactcga
      961 cattctctca caagtctgcc caacttgtag gcaagataga caaacaagaa ccagccaaaa
     1021 agggtcagat aggcgatgaa gcttacacct ttcttgcgat aggattccag cactgcttga
     1081 ctagactgtc ttttttcttc tgaagctgat actgcctgct cgctactatc atgatagcga
     1141 taggcattga ccaaaagacg ataatcaaag ggcggaacca gtggatcaca ggtcaacagg
     1201 gtcaggacat cttgtttttc aatcggaagc aatttttgcc aatcggttgc cttgatgatt
     1261 tctgtatttt tgacccgata ggtgactact ttttcaccaa tttcaacaaa aatctcatcg
     1321 ccctcacgca tttcattcaa tcggaaaaaa cgcaaatcac tataccaact tctgtggcca
     1381 gccagcacac tacgacgatc ccgacctccg aaaggcaagt ccgttcctga caccaccgct
     1441 acaccctgat caagatggga atcactggct cccacccgaa taggttggcg gatttcaaga
     1501 ctaggaatac ttacatagcc gatgatggta tctccaaaat cagatacgga ctgctcatct
     1561 ttcctagtct cagcaaaggg atcaaccgtt gccagttgac cactccgcac tacttcctga
     1621 tagtgttcga tgatctcttc ctctttcttt gaaaagcctg actccgactt tttataactc
     1681 tggtaggcaa aaaattccct cacctcatga actgtcatat tgctgaacaa taataagggc
     1741 aacaataatc ccactatcat caatagatag ccaacaattt tcaacttcat gaccgtctcc
     1801 tcctagtcgc tttccttctt cggaatagga ggtagcctgc caataagaga ataaggagaa
     1861 gagcagctac cagataggat aaaagcatcc tatcgacaaa gaaacctggt tcttcttcct
     1921 catgcacccc tggaacatag ggaatccgat gccccctgac caacaagcga tggctattga
     1981 ccatataagg agtacaggtc aaaagagtgg cataatcctt ctcttctacc accaacacag
     2041 gttcaaaatc actaggttca acaactaaaa tctgatctac ttcataggcc aaaatctcag
     2101 caatattatg aatataaaag cgatctccta gcttgagttg atccaaattg gtaaaaagag
     2161 aggccgtggg aagacctcga tgagctgtca agaccgtatg gctattggca ccaccgacag
     2221 gcaaggaaga accttccaag tgaccaactc ccttttgtaa gacttcctcg gatgtccctg
     2281 catagacagg gattttttca tttagtttcg gaatctcgac atagccgatt ttctccttga
     2341 cctccaacat ccgagcatac tctgctagac cagccttttc ctcctcggaa tagggatcct
     2401 gcaattttct tggatttaaa gttttattgt aggccctagc caattcgaga cgatttaaca
     2461 catcttgagt cggcaggtct ttggctagtt gataaaactc ctgcacttcc tgatctgcct
     2521 cgtagcgata gtatagatga gaacataaag gatagagcgt tatgagcagt cccaacacaa
     2581 aaatcaaacg caggaccaac ttcttttgaa gaaagcgatt agattccagc aggttcttca
     2641 tcatttcttc ctcctcttcc ttttagtcaa gacaaaaatc aagccaatgg caacaagcat
     2701 gcctaaggcg tataaaagat agcgtatcaa aatccgtttc tcagcctgat ccgacgcctt
     2761 gcggtgttcc tcctctacat aaggaatgcg gtgccctcgt accaagagcc tatgtgtatt
     2821 caccatataa ggcgtacaag tcaataaggt tacataatcc tggtttggaa cgaccaataa
     2881 ttgagaaaaa tcactcggct caactaccaa gatttgatcc acttcataag ccaatacgtc
     2941 tccgatattg tgaatataaa attcatctcc tagctttaaa cgatgcaaat ctgtaaacaa
     3001 gcgtgccttg ggaagaccag aatgagccgt caatacacta tgggtattct gtccaccaac
     3061 aggcagggaa gtcccctcta aatgcccaat ccctttctgc aagacctcct ctgaagtccc
     3121 agcatacatg ggaatatcca cttcaatctt aggaatttct acatgtccta tccgttcatg
     3181 gatttccaac atgcgtgcat attccgcccg accggcctcg tgacgagaac ggctataggg
     3241 atcttccgca agaacattgt gtaaactttc gttaaaggca cgagccaaat ccaaacgctg
     3301 cttgatttca gccgattcta agcttgattt tgcttgatca aaatccgtta caatgtgcgt
     3361 cgcctcataa cgatagtaaa aatttgagat atggggatag agtaaaattc caaatccgat
     3421 taaaaaaatt aagtagaaaa ggagattatt cttctttttc ccttttctca ttcgccatca
     3481 cctccaggtg ctacaacgtg atgcattgat gaagaattgt cacgcactaa atcattccaa
     3541 gctaacaaaa actgcaacta aaataacgca attcctgatt cctatcgttt gaaacaacac
     3601 ggatgaccat agaaaattct ttaattcgtc cgtctcactt agttgctctt tggatgctca
     3661 acattcaatt ctagaaatca gcttttgtca catccaatac tccggtcttc aaaccatcca
     3721 aatcttcctg acttagtcct gtcagttcct ttatcagctc atccgtgaaa ttcttcacca
     3781 acatctgacg agcaaccttg agctgaccat ccagcatacc ttctgctcga cctttttgaa
     3841 gtccttgagc cataccttct tcctgaccac gctttctacc tagtatgaaa gaagtctcca
     3901 attcaccaaa atgattggct gcattatagg ctagttgatc aatcatcttc ctttcctcct
     3961 ctgtccatgt atttctatcc agcaagtgtt cggccctgct gatagcgtct gtttgttgct
     4021 ggctaaattc acgattggca aaaaattcca tccacaagcg ttggttcgta gccaattttc
     4081 cctcactcag cttgttcaat tcaataataa ccatttcaaa tggtttcttc atctcccctt
     4141 gctctccaaa cggaatttcc aacacctgtc cattttcctc agctgtcaag acaaaggaat
     4201 ggatgggctg cttatcgtcg aaatactggg tggcgaccaa ggcgatggaa taaactggtg
     4261 aaatcttgtc gtacatgtca tgggttcgtt tgaccttgtc ccgaacattt ggcaagtcct
     4321 tgaccaagtg ctgacaagag taagtccaga gacgtttgat aaagctgtgt tgatggacca
     4381 cctgaatttc aatgataacc tgagttccat catccagtct ggctagaatg tccacggtgg
     4441 tgctaaaata gccctcccgt tctttcttca aatcagcaat cgttccattt aaaatctgga
     4501 cagacttggg acgaaagccc agaaaggtct caatgaaatc aatggtaatc tcgtggtcat
     4561 taaatatctt ttttgccacg atatcaatca tgggattgat gctatgtcga aattttgtca
     4621 attgtgttcc tccgataaat agaatttaag aataatctca atctatttat tcgaagttcc
     4681 tagtaatatt atagcatctt gaaggatatt tttccagaga cactcggtgt attctgtcaa
     4741 cactaggacc aaaggcagac taagtctttt cccctttctt gtatgtgacc aaacgatagc
     4801 ccaataggaa aagcaagact ccgatgtaaa cgaccgtcac cagtactgca tttcctgtat
     4861 agggaat
//
LOCUS       DASGAC010000156         4856 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.158, whole genome shotgun sequence.
ACCESSION   DASGAC010000156 DASGAC010000000
VERSION     DASGAC010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4856)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4856)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4856
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.158"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(177..614)
                     /locus_tag="U1335_001825"
     CDS             complement(177..614)
                     /locus_tag="U1335_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5232281.1"
                     /translation="MTIRAVNEQTLSIWASFASQVWQTKEQVLIEKFSNNEFPFEFLY
                     YSQSEEPIAWISLSLRHDYVEGCQASPVAYLEGIFISPNYRSQEIAKELLNFAEHWAK
                     SQGICQLGSNAELDNLLSQNFHIKHGFREVSRTVHYVRDLNSD"
     gene            complement(819..1718)
                     /gene="era"
                     /locus_tag="U1335_001826"
     CDS             complement(819..1718)
                     /gene="era"
                     /locus_tag="U1335_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEM5232282.1"
                     /translation="MTFKSGFVAILGRPNVGKSTFLNYVMGQKIAIMSDKAQTTRNKI
                     MGIYTTEEEQIVFIDTPGIHKPKTALGDFMVESAYSTLREVDTVLFMVPADEKRGKGD
                     DMIMERLKQAKVPVILVVNKIDKVHPDQLLEQIDDFRQQMDFKEIVPISATQGNNVNR
                     LMEILKENLDEGFQYFPADQITDHPERFLVSEMIREKVLHLTREEIPHSVAVVIDSMK
                     RDEFTDKVHIRATIMVERDSQKGIIIGKQGAMLKKIGSMARRDIELMLGDKVFLETWV
                     KVKKNWRDKKLDLADFGYNEKEY"
     gene            complement(1735..2136)
                     /locus_tag="U1335_001827"
     CDS             complement(1735..2136)
                     /locus_tag="U1335_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEM5232283.1"
                     /translation="MDLQENNSKNRWKNRELIASLEFAVTGLFTAFKEERNMKKHLAS
                     AILVVLAGLIFQVSVTEWLFLLLSISLVIAFEIVNSAIENVVDLASDYHFSMLAKNAK
                     DMAAGAVLFVSGFALLTGLIIFVPKIWDFIF"
     gene            complement(2117..2614)
                     /gene="ybeY"
                     /locus_tag="U1335_001828"
     CDS             complement(2117..2614)
                     /gene="ybeY"
                     /locus_tag="U1335_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018380869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEM5232284.1"
                     /translation="MYIEMIDETGQVSAQMQEQITELLQFAAEKIGKQNKEMAVTFVD
                     NKRVHEVNLEYRGIDRPTDVVSLEYKPESEIVFDEEDMLDNPELAEMMEDFDAYIGEL
                     YISIDKAREQAEDYGHSYEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAY
                     GLTRE"
     gene            2712..3524
                     /locus_tag="U1335_001829"
     CDS             2712..3524
                     /locus_tag="U1335_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM5232285.1"
                     /translation="MLETPKHITAIIESHLDQMTRLEKQIASYFTQLDPSSADLSQEN
                     TIQQLHISPSALTRFAKKCGFSGYREFVFAFQNNQQYLDKHFEKLQRSLTKKVLVDYE
                     EILTATNKLVDEEKLEEIAKLIDSSKRVYFYGIGSSGLVAMEIKSRFMRLGVVCDAIT
                     DKNNLIWTTNILDQTCLVIGLSLSGQTEEVMEHLQLAAQKGIPTALLTTKSFPHPPFD
                     QIIPVASVRHLNYGNRISPQIPLLIMLDIIYAYFLAIDKERKESIFKQTIKE"
     gene            complement(4024..>4856)
                     /locus_tag="U1335_001830"
     CDS             complement(4024..>4856)
                     /locus_tag="U1335_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5232286.1"
                     /translation="LRDLSRFYQNLTEDIVRAKNRLHKVLQVTFPEIETVLSKPTGEQ
                     YWNLVTAFPYKDFVLDLSKDELLESIRQSTSKRISDKRVAYLAEKLIALANQSYCAVK
                     KTSPMLEEVRYYGKELLRLSEQRQTVLDQMVELAQPLPEYDILLSIPGIAETTATSII
                     GELGDIRRFQSANKINAFIGIDLRHYESGNFLAKEHITKRGNPYARKILFKCIHNIAS
                     ASHTKPCHIADFYEKRKRQSQTTSTKPHTIASIHRLIRTMYYLITHNKLYDYRSTQNQ
                     "
BASE COUNT         1414 a         1086 c          920 g         1436 t
ORIGIN      
        1 agtacgcaaa cactcgtcct ttctaacaaa attacaaaat aaaagaaaaa tagaaacctg
       61 accgacggtt catcggaacc tgggtcacgg ttgtgatttt caaagagtcg taggcgagtt
      121 caagacaacg cctaatcggc tttcctttct caactaaatt tttgattgat aacctgttaa
      181 tcactattca aatctcgaac atagtgaacg gttcggctaa cttctcggaa gccatgtttg
      241 atatgaaaat tctggctcag tagattatcc agttccgcat tagatcctag ttggcatatc
      301 ccttgacttt tagcccaatg ctcagcaaaa ttcaacagtt ctttcgcaat ctcttgacta
      361 cggtaattcg ggctaataaa aatcccttct aaataggcaa ctggactcgc ctggcatcct
      421 tctacatagt cgtggcgaag cgacaaacta atccacgcta tcggctcctc actttgagag
      481 taatacaaaa actcaaaagg aaactcatta tttgaaaatt tttctatcaa aacttgctct
      541 tttgtctgcc aaacctgact tgcaaaagaa gcccagatag aaagagtctg ttcattaact
      601 gctctaatcg tcataatatc tcaccgtaac gacggaaaac accacaaaag tggtgcttca
      661 cgcttgaaat taattcattt ctattctggc gagacaagtc acaccaggct atctcgcctt
      721 ccaatttcta agctcggttt ttcaaatggt cactttcaca tttctaagtg accagctgaa
      781 acagtctatt cctagactgt ttcactcccc gtaccttctt aatattcctt ttcattatag
      841 ccaaaatcgg cgaggtcgag ttttttgtct cgccagtttt tcttgacttt gacccaggtt
      901 tcgaggaaga ccttatctcc tagcatgagt tcaatatcac gacgagccat ggaaccaatt
      961 ttcttgagca tggctccttg cttgccgatg atgatgccct tctggctatc acgctctacc
     1021 ataatcgtcg ctcggatatg gaccttgtca gtaaactcat cacgtttcat ggaatcgatg
     1081 acaacggcca cagagtgcgg aatttcctca cgagtcagat gtagaacctt ctcacgaatc
     1141 atctcagata ccaagaaacg ttctgggtgg tcagtgattt ggtccgctgg gaaatattgg
     1201 aagccttcgt ccaggttttc cttgagaatt tccataagtc ggttgacatt gttcccttgg
     1261 gtagcagaaa ttggcacaat ttccttgaag tccatctgtt gacggaaatc atcaatctgt
     1321 tccaaaagct ggtctggatg aaccttgtca atcttgttaa ccactaaaat gactggaacc
     1381 ttggcttgtt tgaggcgttc cataatcatg tcgtcaccct tgcctcgttt ttcatcggct
     1441 ggcaccataa agaggaccgt atccacttca cgaagggtgc tataggcaga ttccaccata
     1501 aagtcaccca aggctgtctt aggcttgtga attcccggtg tgtcaatgaa gacaatctgc
     1561 tcttcttctg tcgtataaat gcccataatc ttgttacggg tggtttgagc cttatcgctc
     1621 atgatggcaa ttttttgccc cattacatag ttgagaaagg ttgatttccc aacgtttgga
     1681 cgacctaaaa tcgccacaaa tcctgactta aatgtcatgt attctcctta tattctaaaa
     1741 aataaagtcc caaattttcg gcacaaagat aatcaatcct gtcaacaagg caaatcctga
     1801 cacaaacaag actgcccctg ctgccatatc ttttgcattc tttgccaaca tagaaaaatg
     1861 atagtctgac gccaaatcca ccacattctc aatagccgaa ttcacaattt caaaagcgat
     1921 aaccagacta atactgagca agaggaagag ccattctgta acagatactt ggaaaataag
     1981 tcccgcaagc actacaagaa tagctgaagc aaggtgcttc ttcatattgc gttcttcctt
     2041 gaaagccgta aacaaacccg ttactgcaaa ttctagacta gcaatcaatt ctcggttttt
     2101 ccagcgattt tttgaattat tctcttgtaa gtccataggc cgtcaaaatt tcttcttgta
     2161 aaccaaacat ttctgcttct tcttctggcg tataatgatc atagccatta atatgcagaa
     2221 aaccgtgtac agctaaaaag cccatttcgc gctcgtagct atgaccataa tcttcagctt
     2281 gctcacgcgc cttatcgata gaaatataca attcaccaat gtaggcatcg aaatcttcca
     2341 tcatctcagc caattcagga ttgtccagca tgtcttcctc atcaaaaaca atctccgact
     2401 ctggcttata ctctagacta acaacgtctg tcggacggtc aattcctcgg tactccaagt
     2461 taacctcatg gacacgctta ttgtccacaa aagtcacagc catttccttg ttttgcttgc
     2521 cgattttctc cgccgcaaac tggagcaatt ccgtaatctg ctcctgcatt tgagcagaaa
     2581 cctgccctgt ttcatcaatc atttcgatat acataatctt acattccttt tacgtttcca
     2641 ttatatcata aaacctatca atgaggaggt tttatgatat aatatcctaa gaagctatca
     2701 gaggaatgaa gatgttagaa acaccgaaac acatcactgc catcattgag tctcatctgg
     2761 atcagatgac tagacttgaa aagcagattg ccagttattt tactcagtta gacccatcta
     2821 gcgccgatct tagccaagaa aacactatac agcaactcca catttctcca tctgctctta
     2881 cccgttttgc taaaaaatgt ggtttttccg gttatcgaga atttgtcttt gcctttcaga
     2941 ataaccaaca atacttggat aaacattttg aaaaattaca gcggagccta acaaaaaaag
     3001 tcttggtaga ctatgaggaa atcctaactg ctaccaataa actggtagat gaggaaaaat
     3061 tagaagagat tgccaaactg attgacagta gtaagcgtgt ctatttttat ggaatcggca
     3121 gttctggttt ggttgcaatg gaaatcaaat cccgctttat gcgactggga gtcgtttgtg
     3181 atgctattac agataaaaac aacctcattt ggacaaccaa tatcctagat cagacctgct
     3241 tggttatcgg tctttctttg tctggtcaga cagaagaggt catggagcat ctccagctgg
     3301 ctgctcaaaa ggggattcct accgccctgt taacaactaa gagttttccc catccacctt
     3361 ttgatcaaat cattccagtc gcctctgtcc gccatctcaa ttacggcaat cgtatctcac
     3421 cccaaattcc cctgctcatc atgctagata ttatctacgc ctactttttg gcaatagaca
     3481 aagaaagaaa agaaagtatt tttaaacaga ccatcaaaga ataaacagca aagaggctgg
     3541 gcaaaaagct taacctcgct tctcagggtt cgtgtcaaca tctcagcgca gtggttgatt
     3601 gggtttaaca gtccagtgga ctgttaaagg taggagataa gatttgcaaa gcaaatctca
     3661 gcagttcgtg tttcacactc caaatctgac ctatacgact gatgcgaaca gaattcactt
     3721 catttccaac ctccaacagt cactactctg actgttggag ctatgcgggg gtgggagtga
     3781 aacagtctgg gaatagactg tttcagctca acaactagaa atatggactt gttgacgaac
     3841 tctttttcta ccatttgtca agcctatcaa ggtatttgat gaaaaatata tcgagttcaa
     3901 tagtcaaaat aaggaaattg ttttcttttg gactaaagtt tcgtgtaaaa aagagtacac
     3961 gaaattaaca ccttatgttg aaaatttttg ataaggtgtt acaataatat agcataaaca
     4021 atcttactga ttttgggtag aacgataatc gtaaagtttg ttatgcgtta tgaggtaata
     4081 cattgtccga atgagacgat gtatggaggc aatcgtatgt ggcttcgtag aagtcgtttg
     4141 cgattgtctt tttcgtttct cataaaagtc ggcgatatgg caaggcttgg tgtgactggc
     4201 tgaagcgata ttgtgaatac atttgaacag aatctttcta gcgtagggat tgccacgctt
     4261 ggtaatgtgt tccttagcga ggaagttgcc agattcatag tgtctcagat caataccgat
     4321 aaaggcattg attttattgg cagactgaaa acggcgaata tctcccagtt caccaataat
     4381 acttgttgca gtagtctcag ctattccagg aatagagagc agaatgtcat attcaggtaa
     4441 tggctgagct agttccacca tttggtctag gacagtttgt ctctgttcag aaagccgaag
     4501 caattctttt ccatagtaac gaacctcttc cagcattgga gaggttttct tgacggcaca
     4561 ataagattga ttagctagtg ctatcagctt ctcagctaaa tacgccacac gcttgtccga
     4621 aatacgtttt gaggtggact gacgaatgct ctctaagagt tcgtccttgc ttaaatcaag
     4681 cacgaagtcc ttgtaaggaa acgcagtaac taagttccag tattgttccc cagttggctt
     4741 tgataagaca gtctctatct ctggaaacgt gacttgcaag accttgtgca gacggttttt
     4801 agctcgaacg atgtcctcag ttaagttctg atagaagcga cttaaatctc gcagtt
//
LOCUS       DASGAC010000157         4793 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.159, whole genome shotgun sequence.
ACCESSION   DASGAC010000157 DASGAC010000000
VERSION     DASGAC010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4793
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.159"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..1153
                     /locus_tag="U1335_001831"
     CDS             <1..1153
                     /locus_tag="U1335_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000435446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM5232287.1"
                     /translation="QKFSLTWFFRLFLNSQAVTFLLVTLLTFLTIFIFSKISFLFRPI
                     GSFLEIVLLPMILTGLLYYLLNPMVDWMEKHKISRTVGISILFVLISLLIIWGLAVAI
                     PSIQEQVTSFAQNLPSNIQKIEGQVTSLLQDQRFEQFRPTALELLNKVNDQAVAYAQK
                     FSTSAVNWASNLISTASQIIVAVLIMPFILFYLLRDGQYLNKHITQYLPTKWREPIGT
                     VLSDVNGQLSNYVRGQVTVAIIVALMFSVMFSIIGLSYPITLGVMAGFLNLIPYLGSF
                     LAMIPAVILGLIAGPIMLIKVLVVFMIEQTIEGRFVTPLIIGSSLSIHPITILFVLLT
                     AGQMYGVLGVLLGIPIYASIKVLVKAAFEWYKAHSSLYEDEENEVVNEQ"
     gene            1143..2372
                     /locus_tag="U1335_001832"
     CDS             1143..2372
                     /locus_tag="U1335_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEM5232288.1"
                     /translation="MNNSEKMLVCLDQQDLDKADKYFKRALVQDDSETLLSLAAYLEG
                     IGFFPQARQIYEQVKEEFPEVLINLAQIAFEDGMVEEAFAYLEEISEDSPAYVETLLV
                     KADLYQAEDLSDVAREKLLEASHLSDEPIILFGLAELDMELELFNEAISYYAQLDNRE
                     IYELTGVSTYQRIGIAYASLGKFEAAIEFLEKAVELEYDDQTVFELAALLFEREEYQK
                     ANLYFKQLDTINPDFEGYEYAYAQSLHAEHKIDDALAMTQKGLAKNDFDANLLLQASQ
                     YAYELHDEESAEDYLLKAKEVADDSNELALRLSNLYLEQERFEEVVALFDEEVDNVLA
                     RWNIAKAYQALERDDEAIELYDELAGELAENPEFLADYVAVLRQLGRLDEAKEQARRY
                     IQLVPDDLAMQEFLNEE"
     gene            2376..3092
                     /gene="budA"
                     /locus_tag="U1335_001833"
     CDS             2376..3092
                     /gene="budA"
                     /locus_tag="U1335_001833"
                     /EC_number="4.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019322637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate decarboxylase"
                     /protein_id="HEM5232289.1"
                     /translation="MQVNRLFQYNTLGALMAGLYGGSLTVGELLEHGDLGLGTLDSID
                     GELIVLDGKAYQAKGAGEKPEVVEVPADMKVPYAAVIFHEAEVIFKQRFEMTSDELHQ
                     RIESYYDGENLFRSIKIKGTFSHMHVRMIPKSASDVRFAEVASRQPEYTAENISGTIV
                     GIWTPEIFHGVSVAGYHLHFISDDLTFGGHVMDYVISEGMVEVGPVDQLDQRFPVQDR
                     QYLFAKFNAKEVREDIDKAE"
     gene            complement(3117..4775)
                     /locus_tag="U1335_001834"
     CDS             complement(3117..4775)
                     /locus_tag="U1335_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_147463931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HEM5232290.1"
                     /translation="MSFDGFFLHHMTAELQANLEGGRIQKINQPFEQEIVLNIRSNRQ
                     SHKLLLSAHSVFGRVQLTQSDFTNPKVPNTFTMILRKYLQGAIIEEIRQLDNDRILEF
                     SVSNKDEIGDHIQATLIVEIMGKHSNIILVDKSEQRIIEAIKHVGFSQNSYRTILPGS
                     TYIRPPETHSLNPYTVSDEKLFEILSTQELSPKNLQQVFQGLGRDTASELASHLQTDR
                     LKNFRAFFDQTTQPSLTDKSYTALPFANSPENQPHFESLSSLLDFYYQDKAERDRVAQ
                     QANELIKRVASELEKNRKKLVKQEQELADTETAELVRQKGELLTTYLHQVPNDQASVT
                     LDNYYTGQELEIELDVALTPSQNAQRYFKKYQKLKEAVKHLTNLIEETKATIVYLESV
                     DTMLGQASLAEIDEIREELIETGYLKRRHREKIHKRQKPERYLATDGKTIILVGKNNL
                     QNDELTFKIAKKGELWFHAKDIPGSHVVITDNLDPSDEVKTDAAELAAYFSKARHSNL
                     VQVDMIEAKKLHKPTGGKPGFVTYRGQKTLRVTPTEDKIKSMKI"
BASE COUNT         1239 a          942 c         1145 g         1467 t
ORIGIN      
        1 tcaaaaattt agtctgactt ggtttttccg cttgttttta aatagccaag cggtgacatt
       61 tttattggta accttgctga cttttttgac catatttatt tttagtaaaa ttagtttttt
      121 attcagacca ataggaagct ttttagaaat tgtattgtta ccgatgattt taacaggtct
      181 tttgtattac ctattaaatc cgatggttga ctggatggaa aagcataaaa tttctcgtac
      241 agttggtatt tccattctct ttgttttaat cagtcttctc attatctggg gactggcggt
      301 ggcaattccg agtattcaag agcaagtgac atcttttgcg caaaatcttc cttcaaatat
      361 ccagaaaatc gaagggcaag tgacgagctt attgcaggac caaagatttg aacaatttcg
      421 tcctactgca ttggaattgt taaataaggt caatgatcaa gcagttgctt atgcgcaaaa
      481 attttcaaca agtgctgtaa actgggcaag taatttgatt tcgacagcat ctcaaattat
      541 tgttgctgtt ctgattatgc cttttattct cttttatctg ttacgggatg gtcagtattt
      601 gaataaacac attacccaat atctaccaac caagtggaga gaaccgattg gaacagtact
      661 atcagatgtg aatgggcaat tatcaaacta tgttcgtggt caggtgaccg ttgcgattat
      721 tgtagccctg atgttctcag tgatgttctc aatcattggt cttagctatc caataacttt
      781 gggggtgatg gctggtttcc tcaatctaat tccgtatttg ggttctttct tggccatgat
      841 tccagctgtt attttaggat tgattgctgg tccaatcatg ctgataaagg ttttagtagt
      901 ctttatgatt gagcagacta tagaaggtcg ttttgtgaca ccgttgatta tcggaagctc
      961 cctaagtatt catccgatta ccattttatt tgtattattg acagctggtc agatgtacgg
     1021 tgtcctagga gttcttctgg gaattccaat atatgcctct attaaggttt tagtgaaagc
     1081 ggcatttgaa tggtacaagg cacacagtag tttgtatgaa gatgaagaaa atgaggttgt
     1141 gaatgaacaa tagtgaaaaa atgttggttt gtttggacca acaggattta gacaaggcag
     1201 ataagtattt caagcgcgcc ttggtgcaag atgatagcga aacgcttttg tccttggcag
     1261 cctatttaga aggcattggt tttttcccac aggctagaca aatctatgaa caggtcaaag
     1321 aagaatttcc cgaagtactg atcaatcttg cccaaatagc atttgaagac ggcatggtcg
     1381 aagaagcttt tgcttatttg gaggaaattt cggaagacag tcctgcctat gtagaaacct
     1441 tgttggtcaa ggcggacttg tatcaggcag aagacttgtc ggatgtggcg cgtgaaaaat
     1501 tgttagaagc aagtcactta tcagatgaac ccatcatcct ctttggctta gcagaattgg
     1561 atatggaact ggagcttttt aatgaggcta tttcctacta tgcccagctg gataatcgtg
     1621 aaatctacga attaacggga gtttctacct atcagcgaat tggtattgcc tatgcaagtt
     1681 tagggaaatt tgaagcggcg attgaatttt tggaaaaggc tgttgagttg gaatacgatg
     1741 atcagacggt ttttgagtta gcagctctgc tatttgaacg agaagaatac caaaaggcca
     1801 atctctattt caagcagttg gataccatca atcctgattt tgagggctat gaatatgctt
     1861 atgcccaatc tctccatgcc gagcataaga ttgatgatgc attggctatg actcaaaaag
     1921 gcctggcgaa aaatgacttt gatgccaatc tcttgctcca ggcttctcag tatgcctatg
     1981 aattgcatga cgaggagtct gcggaagact atctcctcaa ggcaaaagag gtggcagatg
     2041 atagtaacga actagctctg cgcttgtcca atctgtatct tgaacaggaa cgatttgaag
     2101 aggttgtggc tttatttgat gaagaggtag ataacgttct agctcgctgg aatatcgcca
     2161 aggcttatca agctctagaa agagacgatg aagctattga gctttacgat gaattggctg
     2221 gagaattggc tgagaatcct gaatttttgg ctgattacgt agcggtttta cgtcaacttg
     2281 gtcgtttgga tgaggcaaaa gagcaagctc gtcgttatat ccaattggtg ccagacgatt
     2341 tagccatgca agaatttttg aatgaagagt aggttatgca agtaaatcga ttatttcaat
     2401 acaatacctt aggtgcctta atggctggac tgtatggtgg ctccttgacg gttggcgaat
     2461 tgttggaaca tggtgatttg ggtttgggta cactggactc tattgacggt gagctgattg
     2521 tcttggatgg aaaggcttat caggccaagg gagcagggga gaaaccagaa gtggttgaag
     2581 ttccagctga tatgaaagtt ccctatgcgg cggtcatttt ccatgaggca gaagtgattt
     2641 tcaaacaacg ctttgaaatg actagcgatg aattgcacca gcgaattgaa tcctattatg
     2701 atggggaaaa tctttttcgc tccatcaaaa tcaaagggac attttcgcat atgcacgtgc
     2761 gcatgattcc aaaatcggct tcggatgttc gatttgcgga ggtggcaagt cgccagcctg
     2821 agtataccgc tgagaatatt tcaggcacca ttgttggtat ttggacacca gaaatttttc
     2881 acggggtcag tgtggctggc taccatttgc attttatttc ggacgatttg acatttggtg
     2941 gtcatgtcat ggactatgtt atctcagaag gaatggtgga agtgggacct gtggatcagc
     3001 tggatcaacg cttccctgtc caagaccgcc aatatctttt tgctaagttc aacgctaagg
     3061 aagttagaga agatattgat aaggcggagt gatttcaata cagaaaaatc catgaattag
     3121 attttcatgg attttatttt gtcttcagtt ggggtgacac ggagggtctt ctgacctcgg
     3181 taggtcacaa aaccaggctt gccacctgtt ggtttgtgaa gtttcttggc ctcaatcata
     3241 tcgacttgga ccagattgga atgtctggcc ttagagaaat aggcggctaa ctccgccgca
     3301 tcggtcttga cctcgtcgct tgggtccaag ttatcagtga tgaccacgtg actgcctgga
     3361 atgtctttgg catggaacca gagttcgcct tttttggcta ttttgaaggt caactcatca
     3421 ttttgcaagt tatttttccc aaccagaatg atggtttttc catccgtcgc caagtatcgt
     3481 tcaggtttct gacgcttatg gattttctca cggtggcgac gtttgaggta gcctgtttca
     3541 atcaattcct cacggatttc atcgatttct gccagactag cctgtcccag catggtgtca
     3601 acggactcca gatagacaat ggttgccttg gtctcctcaa tcaagttagt caggtgcttg
     3661 accgcctcct tgagtttctg gtacttcttg aagtaccgct gggcattctg gctaggagta
     3721 agagctacgt ccaactcaat ctccagttcc tggcccgtat agtagttgtc taaggtcaca
     3781 ctagcctggt catttggcac ttgatgcaga taggtggtca ggagctcgcc cttttgccgc
     3841 accaactccg ccgtctccgt atccgccaat tcctgctcct gcttgaccaa cttcttgcga
     3901 tttttctcca gctcactggc cacccgcttg atcagctcat tggcctgctg ggccaccctg
     3961 tcccgctccg ccttgtcctg atagtagaag tccagcagac tgctcaggct ctcaaagtgt
     4021 ggctggtttt cagggctatt ggcaaatggc agagcagtat aggatttgtc tgtcaggcta
     4081 ggctgagttg tctggtcaaa aaaggcacgg aagttcttga ggcgatccgt ctgcaagtga
     4141 ctagccagtt cagaagccgt atcccgtccc aaaccttgaa agacctgttg gagatttttc
     4201 ggactcagtt cctgagtcga taagatttca aacaatttct catcagacac cgtataagga
     4261 ttgagagaat gtgtctccgg tggacgaatg taggttgagc ctggcaaaat agtccggtag
     4321 gaattttgcg agaaaccaac gtgcttgata gcctcgataa tccgctgttc agacttatcc
     4381 accaagatga tattgctgtg cttgcccatg atttccacaa tcaaggtagc ttggatatgg
     4441 tcgccaatct cgtccttgtt ggacactgaa aattctaaga tgcggtcatt gtccaactga
     4501 cgaatttcct caataatggc gccctgcaag tattttcgta aaatcatggt aaaggtattg
     4561 ggcaccttgg gattggtaaa gtccgactgg gttagctgaa cccgcccgaa aaccgaatgg
     4621 gcggacagga gcaatttatg gctctgacgg ttgctgcgga tgttgaggac aatctcctgt
     4681 tcaaagggtt ggttgatttt ctgaatccgc ccaccttcta aattggcctg taactcagcc
     4741 gtcatgtgat gtaaaaaaaa tccgtcaaaa gacatggttt tcctctttct aat
//
LOCUS       DASGAC010000158         4709 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.160, whole genome shotgun sequence.
ACCESSION   DASGAC010000158 DASGAC010000000
VERSION     DASGAC010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4709)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4709)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4709
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.160"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            25..783
                     /locus_tag="U1335_001835"
     CDS             25..783
                     /locus_tag="U1335_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEM5232291.1"
                     /translation="MENTPRLNLVIDVLMLAGAILAQSGAEIHRVEDTMIRIAHSQGI
                     EQANVLAIPAAIFFSIDHTNISRMKRIVNSNYDMQKVCDVNQISRSLANEEISLEEAW
                     SQLNAIKQQKPPYNNIQITLAAVVAAPFFTIMFGGSLLDAAGAVLATALAFPISLIVD
                     RYIGIDFVTTFVGAFVFSLTSYLLSATTTLPINPNLINAGAVMPFVPGIAFTNAVRDL
                     MTNHINTGMTKFFQTALIILSLGAGTTVAFMLVR"
     gene            787..1239
                     /locus_tag="U1335_001836"
     CDS             787..1239
                     /locus_tag="U1335_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEM5232292.1"
                     /translation="MTPVHFLLQALASYIAIAAFLIVLNVQRKMLVPGGLLGMLVWLI
                     YLLLLEPTNVLIATFFAAIIGSCVSQIMSIWLKTPSVIFSLAILAPLVPGYRAYMTTT
                     YFVSGDHAQALTNITTVLTLALVIPIGMASGTILLRLYKVLRTDKKAA"
     gene            1296..2486
                     /locus_tag="U1335_001837"
     CDS             1296..2486
                     /locus_tag="U1335_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003014112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM5232293.1"
                     /translation="MNQNVTNLKLAERGALLSIGAYIVLSGIKLVAGQLFHSDALRAD
                     AFNNISDIIGNIAVLVGLKMAQKPADTDHKFGHWKMEDLASLITSFIMFIVGFQVLYD
                     TLQKLISNSSIEVDIMGAIVGIFSALVMLAVYLYNNRLAKKVRSKALEAAAKDNLSDA
                     VTSIGTSIAIFAAAFNFPIVDKIAAIIITFFILKTAYDIFMESFFTLSDGFDENLLKK
                     YEEDILKLPKIVSVKSQRGRTYGANIYLDVVLEMNPDLSVYESHEVTEQVEQLLTLKH
                     GVFDVDIHVEPSEIPHDEMYEHVYDKLFRFETEIQAHANGYEELIDDQYLLIDAKGRY
                     RNKTQMLADHPIQTTYLSNYQMTSISQKSKLVTFEIGDYVHTSLWRRHENWTVVFHQI
                     SKKA"
     gene            complement(2550..3380)
                     /locus_tag="U1335_001838"
     CDS             complement(2550..3380)
                     /locus_tag="U1335_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000735768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM5232294.1"
                     /translation="MKKMMLAAAALVTSFALVACGSSQSATKSDNWSTYESEKSITIG
                     FDKTFVPMGFEEADGTYTGFDIDLATAVFEKYDIEVKWQPIDWDLKETELNNGNIDLI
                     WNGYSVTDERKEKVLFTDSYMDNQQVLVTKKSSNISQVSDMADKILGAQAGSSGYSVF
                     ESQPAILKDIVQNNDASQYATFNEALIDLKNDRIDGLLIDRVYANYYLQQEGIIADYN
                     IIDAGFENESFAVGARKSDTTLVENINKAFTELYSDGTFQEISQKWFGEDIATDAVKN
                     "
     gene            complement(3407..4039)
                     /locus_tag="U1335_001839"
     CDS             complement(3407..4039)
                     /locus_tag="U1335_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM5232295.1"
                     /translation="MLELRNLSKRFDNKQIFSNYDLVIPEGKIIAIVGQSGGGKTTLL
                     RMLAGLETIDSGTLIYNGQELPLEELGKRHLLGFVFQDFQLFPHLSVLENLVLSPVKT
                     QNMSRSEAEDKALKLLDTLGLANHATAYPFSLSGGQKQRVALARAMMIDPEIIGYDEP
                     TSALDPELRKEVEKLILENRATGITQIVVTHDMQFAENIADEIIKIEPKH"
     gene            complement(4049..4690)
                     /locus_tag="U1335_001840"
     CDS             complement(4049..4690)
                     /locus_tag="U1335_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004228788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM5232296.1"
                     /translation="MDYVLEVLPSLLNGAVVSLQVFFLVLILSLPLGAVLAFLMQLKF
                     KPLQWLLNFYVLIMRGTPLLLQLIFVYYVLPSVGITFDRMPAVILAFTLNYAAYFSEI
                     FRGGIEAIPKGQYEAAKVLKFTPVQTIRYIVLPQVIKIVLPSVFNEVMTLVKDTSLVY
                     ALGVSDLLLASRTAANRDASLAPMFIAGAIYLLMIGAVTLISKQVEKKFDYYR"
BASE COUNT         1411 a         1044 c          856 g         1398 t
ORIGIN      
        1 ctagcagagg gatgggactt acttatggaa aacactccta gactaaactt ggtcatagac
       61 gtgctcatgc tcgctggtgc cattttggca caaagcggtg cagaaattca ccgagttgaa
      121 gataccatga ttcggattgc acattcacaa ggaattgaac aggccaatgt ccttgccatc
      181 cctgctgcta tctttttctc catcgaccat acgaatattt cgcgtatgaa acgtatcgta
      241 aattcaaatt acgatatgca gaaagtttgt gacgtcaacc aaatctcccg ttccctagcc
      301 aatgaagaaa tcagcctaga agaagcttgg agccaattaa atgcaatcaa acaacaaaag
      361 ccaccttata acaatatcca aataaccttg gctgccgtag tagccgcacc tttttttacc
      421 atcatgttcg gaggttctct tttagatgca gcaggtgctg tcctcgcaac agctttagct
      481 ttccctatct cactaattgt cgatcgctat attggcattg attttgtcac caccttcgtt
      541 ggcgcctttg tcttctcact cacctcttat ttattaagcg caaccactac tctccccatt
      601 aatcctaacc tgattaatgc aggggcagtc atgccttttg taccagggat tgcttttaca
      661 aatgctgtaa gagacctcat gaccaatcat atcaatacag ggatgaccaa atttttccaa
      721 acagcgctta ttatcttatc gctcggtgca ggtacaactg tggcctttat gcttgtgagg
      781 taatctatga caccagttca cttcttatta caggcactcg cctcttatat cgctatcgca
      841 gccttcttaa ttgttctcaa tgttcaaaga aaaatgctgg tccctggtgg actcctaggc
      901 atgcttgttt ggcttattta tcttttacta ttggaaccaa caaatgtctt gattgctacc
      961 tttttcgcgg caattatcgg atcctgtgtc agtcaaatca tgagtatttg gttaaaaaca
     1021 ccctccgtca tcttttcatt ggctatactt gcaccgcttg ttccaggcta tcgagcctac
     1081 atgaccacga cttatttcgt ttctggggac cacgctcaag ccctaaccaa tatcactacc
     1141 gtcttaactt tagccttagt catccccatc ggtatggcca gcggaacaat attattacgc
     1201 ctttataagg ttcttcgaac cgacaaaaaa gcagcctaac cccttgaaaa taaggggcct
     1261 ttttgttaaa ataaaaactt atcaaaggag atgctatgaa ccaaaacgta accaatctaa
     1321 aacttgctga acgtggtgcc ttgctatcta tcggtgccta tattgtctta tcaggtatca
     1381 aactcgttgc aggacagctc tttcattcgg atgccttacg agcagatgcc ttcaataata
     1441 tttctgatat tatcggtaat atcgctgtac ttgttggact aaaaatggca cagaaaccag
     1501 ctgataccga tcataaattt ggacactgga aaatggaaga cttggcaagc ttgattacat
     1561 ccttcatcat gtttatcgtt ggtttccaag tcctctatga taccctccaa aaactaatca
     1621 gcaattcttc tatcgaagta gacattatgg gggccattgt cggaattttt tctgcactag
     1681 ttatgttagc tgtttattta tataataacc gcttggcaaa aaaagtacgt tccaaggcct
     1741 tagaagcagc tgccaaggat aatctatccg atgcagtcac ttccatagga acttctatcg
     1801 cgatctttgc tgcggccttc aacttcccta ttgtcgataa aattgcagcc atcatcatta
     1861 ccttctttat cctaaaaact gcctacgata tttttatgga aagcttcttt accctatctg
     1921 atggatttga tgaaaactta ttgaaaaagt acgaggaaga tattctcaaa ctcccaaaaa
     1981 tcgtttctgt caaatcacaa cgtggtcgga cttatggagc caatatctac cttgatgttg
     2041 ttttagaaat gaatccagac ttatccgttt atgaaagtca tgaagtgact gagcaggttg
     2101 agcaactcct aacactcaaa catggagttt ttgatgtgga tattcacgta gaaccatctg
     2161 aaattccaca cgatgagatg tatgagcatg tgtatgacaa actcttccgt tttgaaacag
     2221 agatacaagc acatgctaat gggtatgaag aattgattga cgaccagtat ctcttaattg
     2281 atgccaaagg ccgctatcga aataaaactc agatgcttgc tgaccacccc atccaaacca
     2341 cgtatttatc caattaccaa atgacctcca ttagccaaaa atcaaaatta gttacgtttg
     2401 aaattggtga ttatgttcat acgtcacttt ggcgccgtca tgaaaattgg acagttgtat
     2461 ttcatcaaat atccaaaaaa gcctagtcat tgcgacaagg cttttcgttt ggatacataa
     2521 aaagagcaca tggctctttt aaaaaaatct tagttcttca ctgcgtctgt ggcaatatct
     2581 tcaccgaacc atttttgaga aatttcttgg aaagttccat cgctatataa ttctgtaaag
     2641 gctttgttga tgttctcaac aagtgttgta tctgacttac gagcacctac tgcaaaagat
     2701 tcattttcaa aaccagcatc aatgatgttg tagtctgcaa taattccctc ttgttgcaag
     2761 taatagtttg catacacacg gtcaatcaag agtccatcga tacgatcatt tttcaagtca
     2821 atcaaggctt cgttaaatgt cgcatattga cttgcatcat tattttgaac gatgtctttc
     2881 aagattgcag gttgagattc aaagactgag taaccagaag aacctgcttg cgcacccaaa
     2941 atcttgtccg ccatgtcaga aacttgactg atattggatg attttttcgt cacaagtact
     3001 tgttggttat ccatgtacga atcagtaaaa agaacttttt ccttacgctc atcagttaca
     3061 gaatagccat tccaaatcaa atcaatattg ccattgttca attcagtttc tttcaaatcc
     3121 caatcgattg gttgccattt gacttcaata tcatattttt caaagactgc tgttgccaaa
     3181 tcaatatcaa aaccagtata tgtaccatca gcctcttcaa agcccattgg gacaaaggtc
     3241 ttatcaaaac caatggtaat agacttctcc gattcgtaag ttgaccaatt gtcagactta
     3301 gttgccgatt gacttgagcc acaagcaaca agtgcaaaac tagttacaag agccgcagct
     3361 gcaagcatca tttttttcat gttcatcatc atatttgttc cttttcttag tgtttcggtt
     3421 caattttgat gatttcatct gcgatattct cagcaaactg catatcgtgg gtgaccacaa
     3481 tttgcgtgat tccagtagcc ctattttcaa gaatgagttt ttcaacttct tttctcaatt
     3541 ctgggtctaa agccgaggtt ggttcatcat agccaataat ctcaggatca atcatcatag
     3601 cacgcgccaa agccacacgt tgcttttgtc cacccgatag tgaaaacgga taggcagtag
     3661 cgtggttagc caggccaaga gtatccaaga gtttaagggc cttgtcttcc gcctctgaac
     3721 gcgacatatt ctgcgttttc acaggagaga gaaccaagtt ttccaaaacg gataggtgtg
     3781 ggaaaagctg gaagtcctgg aagacaaagc ccagcagatg tcgtttcccc aattcctcaa
     3841 gcggcagttc ttgaccatta tatatcaatg ttcctgaatc aatggtttcc aaacctgcca
     3901 acatccgtaa cagagtagtc ttaccaccac cagactgacc gacgatggca ataattttcc
     3961 cctcgggaat gaccaaatca tagttggaga aaatctgttt attatcaaat cgtttggata
     4021 gattgcgtag ttctaacatg acttcctcct atctataata gtcaaatttc ttttctactt
     4081 gtttagaaat aagtgtaaca gctccaatca tcaacagata gattgctcct gcaataaaca
     4141 taggtgccaa acttgcatca cggttagccg cagttcggct agctagcaag aggtcgctaa
     4201 cacctaaggc atataccaaa gatgtatcct tgaccaaggt cataacttcg ttgaacacac
     4261 ttggaaggac aatttttatg acctgtggca agacgatata ccgaatggtc tgaacaggag
     4321 taaatttcaa taccttagca gcttcatact gaccttttgg aatggcttcg ataccaccac
     4381 ggaaaatttc agagaaatag gccgcatagt taagcgtaaa ggctaggata acagcaggca
     4441 tacggtcaaa tgtgatacca acactaggta aaacataata gacaaaaatc agttgcagga
     4501 gcaagggagt tccacgcata attaaaacgt agaaattcaa tagccattgc aagggtttaa
     4561 attttagttg cattaaaaat gcaagaacag ctcccagagg caatgatagt atcaaaacta
     4621 gaaaaaatac ttgtagggaa accaccgcac catttaatag actgggcaga acttccaaaa
     4681 cataatccat agaattctcc taaaagagt
//
LOCUS       DASGAC010000159         4596 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.161, whole genome shotgun sequence.
ACCESSION   DASGAC010000159 DASGAC010000000
VERSION     DASGAC010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4596)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4596)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4596
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.161"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            85..2037
                     /gene="gyrB"
                     /locus_tag="U1335_001841"
     CDS             85..2037
                     /gene="gyrB"
                     /locus_tag="U1335_001841"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015604652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEM5232297.1"
                     /translation="MTEEIKDLQEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEG
                     LHHLVWEIVDNSIDEALAGFADKIEVYIEPDNSITVIDNGRGIPVDIQEKTGRPAVET
                     VFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVV
                     ADLEVVGETDRSGTTVHFTPDPEIFTETTEFDFAKLNKRIQELAFLNRGLNLSITDKR
                     EGVEQTKEYHYEGGIASYVEYLNENKDVIFETPIYTEGEMDDITVEVAMQYTTSYHEN
                     VVSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVI
                     SVKHPGPQFEGQTKTKLGNSEVVKITNRLFSDAFAEFLLENPQIARRIVEKGILASKA
                     RIAAKRAREVTRKKSGLEISNLPGKLADCSSNDATKTELFIVEGDSAGGSAKSGRDRE
                     FQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTD
                     ADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPPIYGIKVGSEIKEYIQPGVNQEQE
                     LQDALERHSTGRSKPTIQRYKGLGEMDDHQLWETTMNPENRLMARVSVDDAAEADKIF
                     DMLMGDKVEPRREFIEENAVYSTLDV"
     gene            2126..3850
                     /gene="ezrA"
                     /locus_tag="U1335_001842"
     CDS             2126..3850
                     /gene="ezrA"
                     /locus_tag="U1335_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation ring formation regulator EzrA"
                     /protein_id="HEM5232298.1"
                     /translation="MPTGTIILIVSIVIILIIAYVACLIVRKRNDNLLVALEERKEEL
                     FNLPVNEEVEAVKALHLIGQSQVSFREWNQKWVDLSLNSFADIENHIFEAEGYNNAFR
                     FVSAKNAIDSIESQIDLIEEDIASIRHGLMELKEQEEKNSGRVKHALNLFDSLQEAVR
                     ENPDSYGETLPELEKQLKNIEVEFSEFVMLNSSGDPIEASEILDKAEEHMIALNQIMD
                     RIPSLIERVTKDFPEQLEDLESGYRKLVEQNYLFTESNIESQFQNIRVSIRENTALIV
                     SFDLDAAEAENEGIQAKIDHLYKVFNREIEANKEAVKISKNLPKFLEHVVQNTQLLDE
                     ESQRLNATYLLADSKLSRINQLKARLESIEIVVTESVEDIENPQVAYSILKERLDHSL
                     ASLKEIEEEQLVLADYLKSQELSENTARKKATLYINKLHTLKRYMEKRNLPGIPAEFL
                     TNFFRTSDHVEALIAELDYKRINIEVVNRLLENATYDMNQLEELAYLIVQNATLTEQL
                     LQYSNRYRSFDESVQKAFNRSLSIFEKDFDYQAAFEEISFALETVEPGVTERFVRSYE
                     KTREAIRY"
     gene            3902..4537
                     /gene="serB"
                     /locus_tag="U1335_001843"
     CDS             3902..4537
                     /gene="serB"
                     /locus_tag="U1335_001843"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEM5232299.1"
                     /translation="MTTGLLVMDVDSTLILEEGIDLLGEEAGLGEQVAAITERAMRGE
                     LDFEEALRERVALLKGLPVSVFDRIIQKIHFTPGAAELVSELKMRGYKVAVVSGGFHE
                     TVDRLAAQLELDYVRANRLEVVDGVLTGQVLGEIVTKDTKKACLEEWAAENGLSLSQT
                     IAMGDGANDLPMIQRAGIGVAFCAKPIVQEQAPYQINEKNLYKLIEILDSK"
BASE COUNT         1468 a          772 c         1061 g         1295 t
ORIGIN      
        1 gctctaaaaa tatgtttcgc ttttatccag atggattggc ttttctattt ttaaggagca
       61 acaaatagaa aataaggaaa agaaatgaca gaagaaatca aagatttaca agagaaggct
      121 caagaatatg atgccagtca gattcaagtc ttggaaggtc ttgaagctgt tcgaatgcgt
      181 ccagggatgt atatcggctc aacatctaaa gaaggtctcc atcacttggt ttgggaaatt
      241 gtcgacaact caatcgatga ggcgctggct ggttttgcgg ataaaattga agtttatatt
      301 gagccagata actccatcac ggttattgat aatggacgtg ggattccggt agatattcag
      361 gaaaaaactg gtcgtccagc ggtagaaact gtctttacag tgctccatgc aggtggtaaa
      421 tttggcggag gcggttataa ggtctcaggg ggattgcacg gcgtaggttc atcagtcgta
      481 aacgccctat ctactcagct agatgtccat gtctacaaaa atggtcaggt ctatttccaa
      541 gagtataaac gtggtgaagt cgttgcagat ttggaggttg ttggagaaac agaccgttct
      601 ggtacaactg tacattttac acctgaccca gaaattttta ctgagacgac tgagttcgac
      661 tttgcaaaat taaataagcg gatccaagaa ttggctttcc taaatcgtgg tttaaatctc
      721 tctattacgg acaaacgtga gggagtggag caaacaaagg aatatcacta tgaaggtggt
      781 attgcttcct acgttgagta tcttaatgag aacaaggatg tcatttttga gacccctatc
      841 tatacagaag gggaaatgga tgatattacc gttgaggttg ccatgcaata tacgacgagt
      901 tatcatgaaa acgtagttag ttttgccaac aatattcaca cacatgaagg tggtacccat
      961 gagcaaggat tccgtacagc tctgacacgt gttatcaacg actacgccaa gaaaaataaa
     1021 attctcaaag aaaatgagga taatttgact ggtgaagatg tgcgtgaagg tttgacagcg
     1081 gtcatttctg ttaagcaccc aggtcctcaa tttgagggac aaactaagac aaaacttggg
     1141 aatagtgaag tggtcaaaat taccaaccgc cttttctctg atgcctttgc agaatttctt
     1201 ttggaaaatc cacagattgc tagacggatt gttgaaaaag ggattttggc aagcaaggct
     1261 cgtattgctg ctaagcgtgc gcgtgaggta actcgtaaga aatcgggtct tgaaatctca
     1321 aacctcccag gtaagttagc ggattgttcc tcaaatgatg caacgaagac agagcttttc
     1381 atcgttgagg gggactcagc cggtggttca gctaaatccg gtcgcgaccg tgaatttcag
     1441 gctattttac cgattcgtgg taagattttg aacgtagaaa aagccagcat ggacaagatt
     1501 ttggccaacg aagaaatccg tagtctattt acagctatgg gaactggctt tggtgctgat
     1561 ttcgacgtta gcaaggcacg ttatcaaaaa ttagtcatta tgacagatgc cgatgtcgat
     1621 ggtgcccata ttcggacact ccttctgaca ttattttacc gctacatgcg tcctgttgta
     1681 gaagcgggat acgtatatat cgctcaacca cctatttacg gtatcaaggt tggaagtgag
     1741 ataaaagaat atattcaacc tggggttaat caagagcaag aattgcaaga tgccttagaa
     1801 agacatagta cgggacggtc caagccaaca atccaacgtt acaaaggttt gggagaaatg
     1861 gatgatcatc agttgtggga aactacgatg aatcctgaaa atcgtctcat ggcacgcgtt
     1921 tcagttgatg atgcggcaga agccgataag atttttgaca tgctaatggg ggataaggtt
     1981 gaacctcgtc gagagtttat cgaggaaaat gctgtttatt caacattgga tgtctaaaaa
     2041 ctaaaaaaac aagtgcatat actagagatt tatggtataa ttaagcgata ttttctagta
     2101 attactatga gctaaggaga tttacatgcc tacaggaaca atcatcttaa tcgtttcgat
     2161 tgttattatt ttaatcattg cctatgtagc ttgcctgatt gttcgtaaac gaaatgacaa
     2221 ccttttggtt gcattggaag aacgtaagga agagctattt aaccttccag ttaatgaaga
     2281 agtcgaagct gtcaaagcac ttcatttgat tggtcaaagt caggtgtcat tccgtgaatg
     2341 gaatcaaaaa tgggttgatt tgtcgctcaa ttcatttgct gacattgaaa atcatatctt
     2401 tgaggcagaa ggctataaca atgcttttcg ctttgtgagt gcaaagaacg ctatagacag
     2461 tatcgaaagc caaattgatt taattgaaga agacatcgcc tctatccgtc atggtttgat
     2521 ggagttgaag gagcaagaag agaaaaactc tggtcgtgta aaacatgcgt taaacttgtt
     2581 cgatagtttg caggaagctg ttcgtgaaaa tccagatagc tacggtgaga cattaccaga
     2641 acttgagaaa caattgaaaa atattgaagt tgagttttct gaatttgtga tgctcaattc
     2701 ctcaggtgac ccgattgaag cttctgaaat ccttgataag gctgaagagc atatgattgc
     2761 tctcaatcaa atcatggatc gcattccaag tttgattgaa cgagttacaa aagatttccc
     2821 agagcaattg gaagatttgg agtcgggtta tcgtaaactg gttgagcaga attatttgtt
     2881 cacagaatct aacatcgagt cacagttcca aaatattcgc gtttcaattc gtgaaaatac
     2941 tgctttgatt gtttcctttg atttggatgc cgcagaagct gaaaatgagg gaattcaagc
     3001 aaaaattgat catttgtata aagtcttcaa tcgtgaaatc gaagcaaata aggaagctgt
     3061 taagattagt aaaaacttgc caaaattctt ggagcatgtt gtccaaaata cacagctctt
     3121 ggatgaggaa agccaacgcc taaatgcaac ttacttgctg gcagatagca aactttcacg
     3181 tatcaatcag cttaaagctc gtttggaatc gattgaaatt gttgttacag aaagtgtgga
     3241 agacattgaa aatccacaag ttgcatattc tattttgaaa gagcgtttgg atcattcatt
     3301 ggcaagtttg aaagaaatcg aagaggagca gcttgtttta gctgactatc tgaaatcaca
     3361 agaattgtca gagaacacag cgcgtaagaa agctacactt tatatcaaca aattgcatac
     3421 ccttaagcgc tatatggaaa aacgcaacct tccaggaatt ccagctgaat ttttaacaaa
     3481 cttctttaga acgagcgatc atgtggaagc cttgattgcc gagttagact ataaacgaat
     3541 caatatcgaa gttgttaacc gtttgttgga aaatgcaacg tatgatatga atcaattgga
     3601 agagttggcg tatttgattg tgcaaaatgc gactttaaca gagcagttgc tacaatactc
     3661 taaccgttat cgttcattcg atgaaagtgt gcaaaaagca ttcaaccgtt cattatcaat
     3721 ttttgaaaag gattttgatt accaagcagc atttgaagaa atttcatttg ctctggaaac
     3781 agttgaacct ggtgtaacag agcgttttgt acgttcatac gaaaaaactc gcgaagccat
     3841 tcgctactag ataaaaagcc atttggcttt ttatttttat actttgaaag gaatattgga
     3901 gatgacaact ggattattag ttatggatgt tgattcaaca ttaattttgg aagaaggaat
     3961 agatttactt ggagaagagg ccggtttagg agagcaagtt gcagcaatta ccgaacgtgc
     4021 tatgcgtggg gaattggatt ttgaagaagc cttacgtgaa cgtgtggcgt tgttaaaggg
     4081 actgcctgtt tctgtgtttg atcgaattat ccaaaaaatc cactttacgc ctggagcagc
     4141 agaattagtc tcagaattaa aaatgcgagg ctataaggta gcagtcgttt caggcgggtt
     4201 tcatgaaaca gtcgatcgac tagctgcaca gttagagtta gactatgttc gggctaatcg
     4261 attagaagta gtggatgggg tattgacggg acaagtattg ggggaaattg taacgaaaga
     4321 tactaaaaaa gcatgtttag aagaatgggc ggcagaaaat gggctgagtc tatctcaaac
     4381 gattgccatg ggggatggag caaatgatct accaatgatt caacgagcag gaattggagt
     4441 agctttctgt gctaaaccga ttgtccaaga acaggcgccc taccaaataa atgaaaaaaa
     4501 tctctataaa ctaatagaga ttttagatag taaataatgg gagcgggaaa gaactcgact
     4561 ggtcaaaaaa agagttcgtc aacaagtctt tgtttc
//
LOCUS       DASGAC010000160         4557 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.162, whole genome shotgun sequence.
ACCESSION   DASGAC010000160 DASGAC010000000
VERSION     DASGAC010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4557
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.162"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            149..1150
                     /gene="ruvB"
                     /locus_tag="U1335_001844"
     CDS             149..1150
                     /gene="ruvB"
                     /locus_tag="U1335_001844"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEM5232300.1"
                     /translation="MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIE
                     AAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVNIKQTSGPVIEKAGDLVALLNDL
                     EPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
                     RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTP
                     RIANRLLKRVRDFAQIMGDGLIDDTITDKALTMLDVDCEGLDYVDQKILRTMIEMYGG
                     GPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATAKAYEHLGYPYTEK"
     gene            1263..1928
                     /locus_tag="U1335_001845"
     CDS             1263..1928
                     /locus_tag="U1335_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5232301.1"
                     /translation="MGDIYVDDSQLPQSALALYGRQSFFGFLAGQPHRDLLKICEEKD
                     VIMVPQTQAWSDLIEETYPDGVYSFTRYATKKNTVFDRGALQEMVDDLPESFDVKLID
                     RNLYEACLVEEWSRDLVGNYIDVEQFLDLGLGYVILHKGQVVSGASSYASYSAGIEIE
                     VDTREDYRGLGLAKACAAQLILACLDRGLYPSWDAHTLTSLKLAEKLGYQLDRPYQAY
                     EWR"
     gene            1930..2553
                     /locus_tag="U1335_001846"
     CDS             1930..2553
                     /locus_tag="U1335_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEM5232302.1"
                     /translation="MTPTFIWDLDGTLLDSYEAILAGIQETYEQFGLPFDREEVRNFI
                     LRYSVKDLLVRDADKYGLDSDELNRVRATSLKEKNTQIPLLVGAREILDWTAEKGIQN
                     FVYTHKSDNAFQVLEDLGVRHHFTEILTSDSGFARKPSPEALLFLIEKYGLSKENTYY
                     IGDRLLDVETAINAGIQSINLQIDGVEKNWKIVSLLDIKQMLTDEYK"
     gene            2673..4049
                     /locus_tag="U1335_001847"
     CDS             2673..4049
                     /locus_tag="U1335_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1182 family transposase"
                     /protein_id="HEM5232303.1"
                     /translation="MLHKEKPDYNRNQYGFYTLDQLVPADHFLRQVEVVIDFDFIYDL
                     VEDTYSSDNGRPSLDPVMLVKIPLIQCFYGIRSMRQTIKDIEVNTAYRWFLGLTLDDK
                     VPHFTTYGKNYSRRFQEKGLIESIFTHILGLCINAGLIDPTEIFIDGTHIKAAANNRK
                     FINQEVEKQAKFMSEQLEIEINQDRVKHGKKPLGPAKEPEPIAKKISTTDPESGWFHK
                     GDHKEVFAYSSQVACDKYGWALAYSVEAGNIHDSQAFPALFAKLEPLKPEYIIADSGY
                     KTPSIAKFLIDKEITPVLPYTRPRGKKGQLRPKDFVYDEHFDCVLCPEHQALTYRTTT
                     REGYREYKSDPAICANCPLLSVCTTSKNHQKVVTRHIWKEYLEQCEDIRHQRGMKELY
                     QHRKETIERLFGTAKEYHNLRYTREKGKSKMEDKIGLTLACLNLKKLVKRMARRPFYF
                     VQMGWFQH"
     gene            4295..>4557
                     /gene="tnpA"
                     /locus_tag="U1335_001848"
     CDS             4295..>4557
                     /gene="tnpA"
                     /locus_tag="U1335_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HEM5232304.1"
                     /translation="MAQKAHSLSHTKWLCKYHIVFTPKYRRKIIYNQYRSSLGEIFRR
                     LCTYKGVEIIEGHLMPDHVHMLVSIPPRLSVSSFMGYLKGKSAL"
BASE COUNT         1291 a          922 c         1091 g         1253 t
ORIGIN      
        1 taaaatgatt tctgttttta gttttcctta agtttgacga gttatactat atccaagcta
       61 gaaatagcga aatttctttt tcatataatc tcctgagaat actggactca ttgagtctgg
      121 tattttcatt ttgtgctata atggtttcat gacaaatcga attttagata tggaacaaat
      181 gcaggacgag gagtatgttg agcgtaccct gcgtccgcag aaattaaatg aatacatcgg
      241 tcaggacaag gttaaggacc agctgaaaat ctttatcgaa gcagccaagc tccgtgatga
      301 agccttggac catacccttc tgtttggtcc tccaggtttg ggaaagacca ccatggcctt
      361 tgttattgcc aacgaattgg gtgttaatat caagcagacc agcggtcctg ttattgagaa
      421 agctggcgat ctggttgcat tactcaatga tttggagcct ggggatgtcc tctttatcga
      481 tgaaatccac cgtatgccca tggcggtcga ggagattctc tactctgcta tggaagactt
      541 ctacatcgac atcatgattg gggctggtga ggccagtcgc tccgtgcatt tggagttgcc
      601 accttttacc ctgattggag cgaccactcg tgcaggcatg ctgtccaatc ctctgcgggc
      661 ccgttttggg attaccggtc acatggaata ctacgaattg gctgatttga cggagattgt
      721 cgagcgaaca gcggatatct tcgacatgga gattacccat gaagccgcta tcgagctggc
      781 tcgtcggtct cgtggaactc cccgtatcgc caaccgtctg ctcaagcggg tgcgggattt
      841 tgcacagatt atgggcgacg gcctgattga tgacaccatt acagacaagg ccttgactat
      901 gctggatgtg gactgtgagg gtctggacta cgtggaccag aagattctcc gcactatgat
      961 tgagatgtac ggtggcggtc ctgtcggtct taacaccctg tcggtcaata ttgccgagga
     1021 gcgtgaaacg gtggaagata tgtacgagcc ttacctgatt cagcagggct tccttatgcg
     1081 gacacggacg gggcgggttg caacagccaa ggcttacgaa cacctgggct atccctatac
     1141 ggaaaaataa tggcagagca gatgagacaa atagctcgtt tatttggaga ctggcctgag
     1201 acgattatct ggacctgttt agaaggtgtc agacgattat ctggacctgt ttagaaggtg
     1261 tcatgggaga catttatgtt gatgacagcc agttgcccca gtcagctcta gctctctatg
     1321 gacggcagag cttctttggt tttttagctg gccagccaca tcgagacttg ctaaaaatct
     1381 gcgaggaaaa ggatgtgatt atggttccac aaactcaggc ttggtctgat ttaatagaag
     1441 aaacttaccc agatggtgtt tattcattta ctcgttatgc aacaaagaaa aatacggtat
     1501 ttgaccgagg cgctttacag gaaatggttg atgacttgcc tgaaagcttt gatgtgaaac
     1561 tgattgaccg taatctgtac gaggcttgtc tggtagagga atggtcacgg gatttggtgg
     1621 gaaattatat agacgtggaa caatttttgg acttgggtct gggctatgtc atcttgcata
     1681 agggacaggt ggtctcaggg gcttcatcct atgccagcta ttcagccggg attgagatag
     1741 aagtggatac tagggaagac tatcgaggtc tgggtttggc aaaagcctgt gcggctcagt
     1801 taattttagc ttgtttagac cgcggactct atccaagctg ggatgcccac accttgacat
     1861 ccttgaaact ggctgaaaag ctgggctacc aactggacag accctatcag gcttacgaat
     1921 ggagataaga tgacaccgac atttatttgg gatttggacg gaacgctgtt ggattcctat
     1981 gaggcgattt tggctggtat acaggaaacc tatgagcagt ttgggcttcc ttttgaccgt
     2041 gaagaagtaa ggaatttcat tcttcgctat tctgtcaagg atttgctggt gcgtgatgcg
     2101 gataagtacg gtctagatag cgatgaactt aatcgtgtgc gtgcgacttc cttgaaggag
     2161 aaaaatacgc agattccttt gctggttggt gcgcgtgaaa ttctggactg gacagcagag
     2221 aaaggaattc aaaatttcgt ttatacacac aaaagtgaca atgcttttca ggtcttggag
     2281 gatttgggtg tccgtcacca tttcacagaa atcttgacca gcgattcagg ttttgcccgc
     2341 aaaccaagtc cagaagctct gctatttctc attgaaaaat atggactgag caaagaaaat
     2401 acctactata tcggtgaccg tttgcttgat gtagaaacag ctatcaacgc agggattcaa
     2461 agcatcaacc tgcaaattga tggtgtggag aagaattgga agattgtttc tttattggac
     2521 ataaaacaaa tgttaactga tgaatacaaa taaaaacaaa cgtaaaaccg tttgtttcag
     2581 actgaagaca aagtccttag aattgatttt ctaagggctt ttcttcgtat ttaggagtat
     2641 aatataagaa aaaggactta tgaggttctc ctatgctaca caaagaaaaa cctgactata
     2701 accgcaatca gtacggtttc tatacccttg accagcttgt gcctgcagat catttcctgc
     2761 gccaagtgga agttgtgatt gacttcgact tcatttatga tctagtagaa gatacctatt
     2821 cgtctgataa tggtcgtcct agtcttgacc ctgtcatgtt agttaaaatt cctctgattc
     2881 agtgctttta tggtattcgt tccatgcgtc agaccatcaa ggatattgaa gtgaatactg
     2941 cctatcgctg gtttcttggt ttaaccctag atgacaaggt gcctcacttc acgacatacg
     3001 gcaaaaatta ttcccgtcgc tttcaagaga aagggttgat tgagtccatt ttcacacata
     3061 ttcttgggct gtgtatcaat gcaggcctga ttgacccgac ggagattttc atagacggaa
     3121 ctcatattaa ggctgcggcc aataatcgta agtttatcaa ccaagaggtg gaaaagcagg
     3181 ccaaattcat gagtgaacag ctggaaatcg aaattaatca agatcgggta aagcacggaa
     3241 aaaagccgct cgggcccgcc aaagagccag agcccatcgc taagaaaatc tccacaaccg
     3301 accctgagag tggctggttc cataaaggtg atcataagga agttttcgct tattcttccc
     3361 aagttgcctg tgataagtat ggctgggcac ttgcttatag tgttgaggct ggtaatatcc
     3421 atgacagtca ggcttttcct gcacttttcg ccaagcttga acccttgaaa ccagagtata
     3481 tcattgcgga ttcgggctat aaaactccca gtattgccaa gtttctaatt gataaggaaa
     3541 tcactcctgt ccttccctac acccgtcccc gtgggaagaa gggacaactt cgtcctaaag
     3601 attttgtcta tgacgaacac ttcgattgtg tcctgtgtcc tgaacatcag gccttgacct
     3661 atcgcacgac tacccgagaa ggctaccgag aatacaaaag tgatccagca atttgtgcca
     3721 actgtcccct attatcagta tgtacgacca gtaagaacca tcaaaaagtt gtcacgcggc
     3781 atatttggaa ggagtatttg gaacagtgcg aggatattcg tcatcaaaga gggatgaagg
     3841 aactctatca acatcggaaa gagacgattg aacggctatt tggcacagcc aaggaatacc
     3901 ataatctgcg ctacacgaga gaaaaaggca agtccaaaat ggaggataag attggactga
     3961 ctttggcgtg cttaaatctc aaaaaactag ttaaaaggat ggcaagaagg cctttttatt
     4021 ttgtccagat ggggtggttt cagcattaaa acagccattt ttctctaaaa accagtaaaa
     4081 aagacaaaca ccaaaacgat gtttgtctgc aatctgaaac aaacgtaaaa ccgtttgttt
     4141 tttattatgt gacttttagt ccgtcacgct ccgtaaggtg cgtgacaaat aaaccacccg
     4201 ctatgcgggt gcgcgatgaa ggttatacca aaaaaactcc aaacgcgata caataaaggt
     4261 gttcaagcct attgtaaagc gaaaggagaa aaatatggcg caaaaggcac atagtttatc
     4321 acatacaaag tggctgtgta aataccacat tgtcttcaca cctaagtata gacgaaaaat
     4381 catctataat caatatcgaa gtagtttggg agaaatattc cgacgtttgt gtacttataa
     4441 aggtgtggaa attatcgaag gtcatctgat gccagaccat gttcacatgt tagtcagtat
     4501 tcctccaagg ctaagtgtat caagttttat gggctattta aaaggcaaga gtgctct
//
LOCUS       DASGAC010000161         4551 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.163, whole genome shotgun sequence.
ACCESSION   DASGAC010000161 DASGAC010000000
VERSION     DASGAC010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4551
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.163"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            183..2528
                     /gene="pflB"
                     /locus_tag="U1335_001849"
     CDS             183..2528
                     /gene="pflB"
                     /locus_tag="U1335_001849"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HEM5232305.1"
                     /translation="MSTKVKTKNVAEDIFAQAWEGFKGTDWQDKASVTRFVQANYTPY
                     DGDESFLAGPTERSLHIKKIIEETKAGYEDTRFPMDVDRATSIADIPAGFIDKENELI
                     FGIQNDELFKLNFMPRGGIRMAETTLIENGYTPDPLLHEIYTKHATTVNDGIFRAYTA
                     DIRRARHSHHVSGLPDAYSRGRIIGMYARLALYGADYLMEEKVADWNAITEIDEESIR
                     LREEINLQYQALQQVVRLGDHYGVDVRKPAMNTKEAIQWTNIAFMAVCRVINGAATSL
                     GRVPIVLDIYAERDLARGTFTESEIQEFVDDFVLKLRTVKFARTKAFDEIYSGDPTFL
                     TTSMAGMGNDGRHRVTKMDYRFLNTLDNIGNSPEPNLTVLWSDQLPYSFRRYCMSMSH
                     KHSSIQYEGVTTMAKDGYGEMSCISCCVSPLDPESEDQRHNIQYFGARVNVLKALLSS
                     WNNGYDDVHKDYKVFDGVEPNTSEIFDYDQVIANFEKALDWLTDTYVDAMNIIHYMTD
                     KYNYEAVQMAFLPTHLRANMGFGICGFANTVDSLSAIKYAQVKPIRDEDGFIYDYEVT
                     GDFPRYGEDDDRVDDIAKWLMEAFFSRLNKHKLYKNAEATVSILTITSNVAYSKQTAN
                     SPVHRGVFLNEDGSVNTSKVEFFPPGANPTSKSRGGWLQNLNTLSKLNFKHANDGISL
                     TTQVSPKALGKTFDEQVNNLVTILDGYFEQGGQHVNLNVMDLNDVYDKIMAGEDVIVR
                     ISGYCVNTKYLTKEQKTELTQRVFHEVLSMDDHAAEVSGQA"
     gene            complement(2779..3726)
                     /locus_tag="U1335_001850"
     CDS             complement(2779..3726)
                     /locus_tag="U1335_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase family protein"
                     /protein_id="HEM5232306.1"
                     /translation="MRQAILDKISEQIGQGVYPGASLALFSKGQWQEYYLGTQDGQTP
                     VEAGLTYDLASVSKVVGVGTLATFLVNSGALELDRTLQSYYPAFADSEVTIRQLLTHT
                     SGIDPFIPNRDSLDADQLKEAILKITVTERKDFFYTDINFLLLGFLLEELGRDSLDQL
                     ISRDVLEPFGMSQTSFGPVSQAVPTVRGVKAGLVHDPKARVLGVHAGSAGLFSTVKDL
                     EIFLERYLTADFAANLTQDYGFDDKRKRSLAWDKKEDWLSHTGYTGTFIMYNRPLQKA
                     AIFLSNRTFDKDERAQWKLDRNQVMVLIRQVLEEEEAVD"
     gene            complement(3723..4457)
                     /locus_tag="U1335_001851"
     CDS             complement(3723..4457)
                     /locus_tag="U1335_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEM5232307.1"
                     /translation="MLRKNEAIVPVLRINNRAINQGFLEKNLGMKTKLEDGPFADFGD
                     RTSPETKLVLTESPGNRTRAVEGLKKLNKIVIKVDNASEIEALLAQGSQYSKLYQGKN
                     GYGFEAVSPEGDTFLLHAEASVDDLKEILPPVPFKVQDDFSGLTAFTVESIWINTPQA
                     SISQDYYEAILPKQAFLHFVGAEGKDLLTPAEQVWDLEGLRFPVEQDFDWAHLESQLE
                     GPFFKDKKASFIQTVDPSGIELWFEK"
BASE COUNT         1361 a         1063 c          876 g         1251 t
ORIGIN      
        1 actgttgtta aatattttaa tataatgatg acttgagaga ccgatgactg gattattgga
       61 tttatattcc actacttgga aaaaattcca atttattttt cagtgttttg tcttgaagaa
      121 agtgcttaca tatgatatac taaaatatgt gaaaagtaac aatatcttaa aggagaaccc
      181 tcatgtcaac aaaagttaaa acaaaaaatg ttgctgaaga cattttcgcc caagcctggg
      241 aaggctttaa aggtacagat tggcaagata aggcaagtgt aacacgcttc gttcaagcca
      301 actacactcc atacgatgga gatgaaagct tcctcgcagg cccaactgag cgttcacttc
      361 atatcaaaaa aatcatcgaa gaaacaaaag ctggctacga agacactcgc ttcccaatgg
      421 acgtagatcg tgctacttct atcgctgata ttccagcagg tttcatcgat aaagagaacg
      481 aactcatctt cggtatccaa aacgatgagc tcttcaaact caatttcatg ccacgtggtg
      541 gtattcgtat ggctgaaacc actcttatcg aaaacggcta tactccagat ccacttcttc
      601 atgaaatcta tacaaaacac gcaacaactg taaacgatgg tatcttccgt gcttatacag
      661 ctgatatccg tcgcgctcgt cactcacacc acgtttctgg tcttccagat gcttactcac
      721 gtggccgtat catcggtatg tacgctcgtt tggcacttta cggtgcagac tacttgatgg
      781 aagaaaaagt tgcagactgg aatgcgatta ctgaaatcga tgaagaatca atccgtcttc
      841 gcgaagaaat caaccttcaa taccaagcat tgcaacaagt tgtccgctta ggtgatcact
      901 atggtgttga tgtgcgcaaa cctgcgatga acacgaaaga agctatccaa tggacaaaca
      961 ttgccttcat ggcagtctgc cgtgttatca acggtgccgc aacttctctt ggtcgtgtgc
     1021 caatcgttct tgatatctac gcagaacgcg acttggctcg cggtacattt accgaatctg
     1081 aaatccaaga atttgttgat gacttcgtat tgaaacttcg tacagtgaaa tttgctcgta
     1141 caaaagcctt cgacgaaatc tactctggtg acccaacatt cttgacaaca tctatggcag
     1201 gtatgggtaa cgatggtcgt caccgtgtta ctaagatgga ctaccgtttc ttgaacacac
     1261 ttgacaacat cggtaactca ccagagccaa acttgacagt tctttggtct gaccaacttc
     1321 catattcatt ccgtcgctac tgtatgtcaa tgagccacaa acactcttct atccaatacg
     1381 aaggtgtgac aacaatggcg aaagatggtt atggcgaaat gtcatgtatc tcttgttgtg
     1441 tatctccact tgatccagaa agcgaagacc aacgccacaa cattcagtac ttcggtgctc
     1501 gtgttaacgt tcttaaagct cttctttcaa gctggaacaa cggctacgac gatgttcaca
     1561 aagattacaa agtgttcgat ggtgttgaac caaatacttc tgaaatcttt gactacgatc
     1621 aagttattgc caactttgaa aaagcccttg actggttgac tgacacttat gtagatgcaa
     1681 tgaacatcat ccactacatg actgataagt acaactatga agcagttcaa atggccttct
     1741 tgccaactca ccttcgtgca aacatgggct tcggtatctg tggatttgca aatactgttg
     1801 actcattgtc tgctatcaag tacgcacaag tgaaaccaat ccgtgacgaa gatggcttca
     1861 tctacgatta cgaagtaact ggcgacttcc cacgttatgg tgaggatgac gaccgtgtag
     1921 atgacattgc gaaatggctc atggaagcat tcttctctcg cttgaacaag cacaaattgt
     1981 acaagaatgc tgaagcaact gtgtctatct tgacaatcac ttcaaacgtt gcttactcta
     2041 aacaaacagc taactcacca gttcaccgcg gtgtattcct caacgaagat ggttctgtta
     2101 acacttctaa agtggaattc ttcccaccag gtgccaaccc aacttctaaa tctcgtggtg
     2161 gttggttgca aaacttgaat actctttcta aactcaactt caaacatgcc aacgacggta
     2221 tctcattgac aactcaagtt tcaccaaaag ctcttggtaa aacattcgat gagcaagtga
     2281 acaacttggt gacaattctt gacggatact tcgaacaagg tggtcaacac gtcaacttga
     2341 acgttatgga cttgaacgat gtttatgaca agattatggc aggtgaagat gttatcgttc
     2401 gtatctctgg atactgcgta aacactaaat acctcactaa agagcaaaaa actgaattga
     2461 ctcaacgtgt cttccacgaa gttctttcaa tggacgacca cgctgctgaa gtttcaggtc
     2521 aagcttaatc ttgctgataa aaaactcaaa ggacttgcac atgcaagtcc ttttactatg
     2581 tcgaaaaatc tactgagtgt tgcggaagga tagttatagt cgaatgaatt agctttcaga
     2641 caaggaactg aggtgcaggt tgctagaaca gcataaaggc tgttctaggt tggaaataag
     2701 acctgcgaag caagtcactt tcgtagagta cggcaagccg aaagtgacga tgtatcaaag
     2761 ttaattcaaa tgactatatt agtcaacagc ctcttcttcc tccaagacct gacgaatcaa
     2821 gaccatgacc tggtttctat ccagcttcca ctgggcccgc tcatccttgt caaaagtacg
     2881 attcgagaga aaaatcgcag ctttctgcaa gggacgattg tacatgataa aagtccctgt
     2941 atagccagta tgggacaacc agtcctcttt cttatcccaa gccaacgacc gcttgcgctt
     3001 atcatcaaaa ccgtaatcct gcgttaaatt cgccgcaaag tcagccgtca gatagcgctc
     3061 caaaaagatt tccaaatctt tgacggtcga aaagagacct gcactacccg cgtgaacacc
     3121 caagacacgc gccttggggt catgtaccag acccgctttg acgccacgta ccgtcggtac
     3181 cgcctgactg actggtccaa aggaggtttg agacatgcca aagggctcta gaacgtctcg
     3241 actgatcagc tggtccagac tgtctctacc cagttcctcc aacaaaaagc ctagcaagag
     3301 aaaattgatg tctgtataga aaaagtcctt cctctccgtc acagtaatct tcaaaatcgc
     3361 ttccttgagc tggtcggcat ccagactatc ccgattggga ataaaaggat caatgccgct
     3421 agtatgggtc aataattgcc gaatggtgac ctcactatcc gcaaaagctg gatagtaaga
     3481 ctgcaaggtc ctatctagct ccaatgctcc gctattgacc aaaaaagtcg caagagtgcc
     3541 aactcccacc accttagaaa cagaggccaa atcataggtc aaacctgcct caactggcgt
     3601 ctgaccatcc tgggtcccca aataatactc ctgccactga cccttagaaa aaagagccag
     3661 actggcacca ggatagactc cttgcccaat ctgctctgaa atcttgtcta aaatcgcttg
     3721 tctcattttt cgaaccacaa ttcaatacca cttgggtcaa ccgtttgaat aaagcttgct
     3781 tttttatctt taaagaatgg tccttccaac tggctttcca aatgcgccca atcaaagtcc
     3841 tgctcgacgg gaaaacgcaa gccttctaaa tcccaaactt gttctgcggg agttaataaa
     3901 tccttacctt ctgctccaac aaaatgcaaa aaggcttgtt taggtaggat agcctcataa
     3961 tagtcttggc taatactagc ctgaggggta ttaatccaaa tagactctac tgtaaaagca
     4021 gtcaatccag aaaagtcatc ctgcacctta aatggaacag gtggaaggat ttcttttagg
     4081 tcatcaacag atgcttctgc atgtaaaaga aaggtgtctc cttctggcga cacagcttca
     4141 aaaccatagc cattttttcc ttggtagagc ttactatact gtgacccttg cgccagtaaa
     4201 gcttcaattt cagaggcatt atctactttt atcacaattt tattcagttt tttaagccct
     4261 tcgacagcac gggtgcgatt accaggagat tctgtcaaaa cgagcttcgt ttctggactt
     4321 gttctatctc caaaatcagc aaaaggacca tcttctagct tggttttcat tcctagattt
     4381 ttttctaaaa atccttggtt aatagcccta ttattaatac gtaaaacagg gactatagct
     4441 tcattttttc tcaacacgat acatttcact cctcagtcat tctacaatat tgtattaaaa
     4501 atttcgtcat tttacaaata attgtatcgt cgttttatac attaatatct t
//
LOCUS       DASGAC010000162         4353 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.164, whole genome shotgun sequence.
ACCESSION   DASGAC010000162 DASGAC010000000
VERSION     DASGAC010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4353)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4353)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4353
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.164"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            47..1213
                     /locus_tag="U1335_001852"
     CDS             47..1213
                     /locus_tag="U1335_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEM5232308.1"
                     /translation="MLKTKKAKIALFSGLSVAAVALIGGALVFGGVLGGSSPTSTEQV
                     ATSLTYTVAKEGSIASSTLLTGTISAADEQYVYYDPSKGDLSEVLVAPGTQVEVGTPL
                     IRYDATELQSALDTAVRGRDKIGRQIYDLRNNGQTVQTTGDAATDEAATAAAQRSVDM
                     QLADLNDSYADAQAAVDKAYTALQEATVTSTVAGTVVEVNKSVSKSSTSSQTVVHIVN
                     QGSLQVTGNLTEYDLANIAVDQEVKLTSKVYPDKSWTGKITYISNYPATDQTASAVAG
                     AGGGSGAKYPFKAALTSELGELKQGFTVNIEVVNTTNHILIPVTAVVPEEDKNFVWTI
                     VEGKAKKVEVTLGNADALNQEVTAGIAAGDQVITIPTPDLEEGKEVEANEEPTY"
     gene            1194..1889
                     /locus_tag="U1335_001853"
     CDS             1194..1889
                     /locus_tag="U1335_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5232309.1"
                     /translation="MKNQLIRLTNINKSYKNGDQELRVLKDIDLEVEEGEFLAIMGPS
                     GSGKSTLMNIIGLLDRSSSGNYWLEGEEVSQLSEKKLAQVRNDQIGFVFQQFFLLSKL
                     NALQNVELPLIYAGVPANQRKKLAKRYLEKVELAERMTHLPSELSGGQKQRVAIARAL
                     VNTPAIILADEPTGALDTKTGEQIMQLLTELNNEGKTIIMVTHEPEIAAYAKRKIVLR
                     DGVITEDSRREEV"
     gene            1890..3140
                     /locus_tag="U1335_001854"
     CDS             1890..3140
                     /locus_tag="U1335_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5232310.1"
                     /translation="MENWKFALKSILAHKMRSLLTMLGIIIGVAAVVIIVAMGTGMSR
                     SIEKSLAGDQNNVQVYFTPYIPVEGAGTTGIFGSIGGGEMSMEEEPDLTDSMLKGLLE
                     IDGLSGYYISASSTSTVAAGNAQADNVFITGVSQSYFDIKALEILAGRRFTANDYSRF
                     SRIIMLDVALAEKLFGSTDVALNQIVSVNANSYLVVGVYKDPKAGTSLYGFNSGGNAI
                     MTNTQLAAEMGTKENSGLYVHVEDVSRAAEVGQAAAAYLTNITGLKEARYDIYDMSAM
                     LDDFKNQMSGVTTFIGAVAGISLLVGGIGVMNIMLVSVTERTREIGLRKALGATRGNI
                     LMQFLIEAMVLTTLGGAIGLAIAQAIVLILNATKVMGEMTAEISIPVVLGSLAFSAAV
                     GIVFGVLPANKASKLDPIEALRYE"
     gene            3263..4327
                     /locus_tag="U1335_001855"
     CDS             3263..4327
                     /locus_tag="U1335_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEM5232311.1"
                     /translation="MVELGISTFGETTPLEKTGETYSHDERIRQLVKEIELADAVGLD
                     VYGIGEHHREDFAVSAPEIVLAAGAVNTKHIKLTSAVSILSSMDPVRLYQQYTTIDAL
                     SNGRAEIMAGRGSFTESFPLFGYDLHDYEELFDEKLDMLLEIDKETNLKWDGHFTQSV
                     DNKPVYPRPVQEDFPIWVATGGNVESTIKIAKKGLPIVYAVIGAGAHRFKPLADAYRK
                     VARNSGHDPKKTKVAAHSWGWIADDHDKAVEEYFYPTKVLTDNIAKDRPHWSEMAKAQ
                     YLYSLTDEGATIVGDPKRVAEKIIKTIETLDLDRFFLHLPIGSMPHEDVLRAIELYGK
                     EVAPIVRDYFAKKEENQSQG"
BASE COUNT         1281 a          832 c         1037 g         1203 t
ORIGIN      
        1 agacaataca aaataaatat gttttgaatt agaaaaggag tatcatatgt taaagacaaa
       61 gaaagctaaa attgctttgt tcagtggtct cagtgttgcg gctgtcgcct taattggtgg
      121 tgccttggta tttggaggcg tattaggtgg ttcctcacca acttctacag agcaagttgc
      181 gaccagtttg acctatacag tagctaaaga gggatcgatt gcttcatcga ccttattgac
      241 aggaacgatt tctgcagcag atgaacaata cgtttactat gatccttcta agggggattt
      301 gagtgaggtt ctggttgctc caggtactca ggttgaagta ggtactcctt taattcgcta
      361 tgatgctaca gaattacagt ctgctttgga tactgctgtt cgtggtcgtg ataagattgg
      421 acgtcagatt tatgatttga gaaacaatgg tcagactgtt caaacaacgg gtgatgctgc
      481 aacagatgaa gcggcaacag ctgcagctca acgttcagta gatatgcagt tggcagactt
      541 gaatgattcg tacgcagatg cacaagctgc tgtggataaa gcgtatacag ccttgcaaga
      601 agctacagtt acaagtacag tagctggtac ggttgttgaa gtgaataaat cagtttcgaa
      661 gagttcaact tctagtcaga ccgttgttca tatcgtcaac caaggtagcc tacaagtgac
      721 aggaaatttg acggaatatg atttggcaaa tattgcagtt gatcaagaag tgaaattaac
      781 cagcaaggta tacccagata agtcatggac tggtaagatt acctatattt caaattatcc
      841 agcaacagat caaaccgcaa gtgcagtagc aggtgcaggt ggtggttcag gtgccaaata
      901 tcctttcaag gctgctttga ccagtgaatt gggtgaattg aagcaaggtt ttacagttaa
      961 tattgaagtg gttaatacta ccaatcatat tttaattcct gtaacagcag ttgttccaga
     1021 agaagataaa aactttgtat ggaccattgt tgaagggaag gctaaaaaag tagaggttac
     1081 ccttggaaat gcggatgctc tcaatcaaga ggtgacagca ggtattgcag caggagatca
     1141 ggtcattact attccaactc cagaccttga agaaggaaaa gaggttgaag ccaatgaaga
     1201 accaacttat tagattaacc aatataaaca aatcctataa aaacggtgac caagaacttc
     1261 gtgtccttaa agatatagat ctcgaggtgg aagaaggcga atttcttgct attatgggac
     1321 cctctggttc aggtaaatca accctgatga acattatcgg gcttttagat cgttctagtt
     1381 cagggaacta ttggttagaa ggtgaagaag tcagtcaact gtctgagaaa aaattagctc
     1441 aggttcggaa tgaccaaatc gggtttgtct ttcaacaatt tttcctgcta tcaaaactca
     1501 atgcccttca aaatgtcgag ttacctttga tttatgcagg agttccagcc aatcaacgaa
     1561 aaaaattagc caagcgatac ttagaaaaag tcgaattggc agaacggatg acccacctac
     1621 cgtcagaatt gtcaggtggt cagaaacaac gggttgccat tgcgcgtgca ttggtcaata
     1681 caccagctat tatcttggca gatgagccaa caggtgcctt ggatactaag acaggcgagc
     1741 agattatgca acttctgaca gagttgaata atgaaggaaa gaccattatc atggttacac
     1801 acgaacctga aattgctgcc tatgccaaac gtaaaatcgt tttgcgtgac ggtgtcatta
     1861 cagaagatag tagaagggag gaggtataga tggaaaattg gaaatttgcc ttaaaatcta
     1921 tcctagctca caagatgcgt tctctcttga ccatgttggg tattatcatc ggtgtagcag
     1981 ctgttgtgat tatcgttgct atgggaacgg ggatgtcccg tagtatagaa aagtccttgg
     2041 ctggtgatca gaataatgtt caggtttatt ttacacctta tattcctgtt gaaggtgcag
     2101 gtacaaccgg gatttttggc agtattggtg gcggtgaaat gtcaatggaa gaagagccag
     2161 atttaacgga ttctatgttg aaagggcttt tggaaatcga tgggctcagt ggctactaca
     2221 ttagtgcttc aagtacctct actgtagcag cgggcaatgc gcaagctgat aatgtcttta
     2281 ttactggtgt tagtcaatcc tattttgaca taaaggcatt ggaaatcttg gctggccgtc
     2341 gttttactgc taacgattac agccgatttt cccgtattat catgttggat gttgccttgg
     2401 ctgagaagct ttttggttca accgatgtag cccttaacca aatcgtcagt gtcaatgcca
     2461 attcttacct tgtagttggt gtttacaaag atcccaaagc aggtacttcc ctctatggtt
     2521 tcaactcagg cggaaatgcc attatgacca atacgcaact agctgctgaa atgggtacca
     2581 aggaaaatag tgggctctat gtccatgtag aagatgtgag tagagctgct gaggttggtc
     2641 aggctgccgc agcatacttg accaacatta caggtctaaa ggaagcccgt tatgatatct
     2701 atgatatgtc agctatgtta gatgatttta agaaccaaat gtcaggtgtc actacgttta
     2761 tcggtgctgt tgcaggaatt tcacttcttg taggtggtat cggtgttatg aacatcatgt
     2821 tggtatcggt aactgagcga actcgtgaga ttggtcttcg taaagctctg ggggcaaccc
     2881 gaggaaatat cttgatgcag ttcttgattg aagctatggt cttgaccact ttaggtggag
     2941 caatcggcct agctatcgct caagccattg tgcttattct caacgccaca aaggttatgg
     3001 gagagatgac agctgaaatc tcaataccgg ttgtattagg aagtttagca ttttcagcag
     3061 cagtcggaat tgtctttggc gttcttcctg ctaataaggc ttctaagctt gatccaattg
     3121 aggcattacg ttacgaataa ttgattgaaa cgattaggtt ttcctagtcg ttttcttttt
     3181 tgagcaaatg ccttgacaat atcactaatt agtaataaaa taagaccatc aaataagtaa
     3241 gagatgtaaa ggagaacaca tcatggtaga attaggtatt tcaacatttg gcgaaacaac
     3301 tccactagaa aaaacagggg aaacgtatag tcacgacgag cggatccgtc aactggttaa
     3361 agaaattgag ctagcagatg cggtggggct tgatgtctat gggattgggg aacatcaccg
     3421 agaagatttt gcggtttctg cacctgagat tgtgctggca gctggtgccg tcaataccaa
     3481 gcatatcaag ttaacatcag cagtttcaat cctttcctcc atggaccctg taaggctcta
     3541 tcagcagtac accaccattg atgctttgtc aaatggcaga gcggaaatca tggcgggtcg
     3601 tggttccttt acggagtcat tccccttgtt tggttatgat ctccatgact atgaagaact
     3661 cttcgatgaa aagctagata tgcttctgga aatcgacaag gaaaccaatc tcaagtggga
     3721 tgggcatttt acccagtcag tcgataacaa gccagtctat ccacgtcctg ttcaggaaga
     3781 ttttcccatt tgggtcgcaa ctgggggcaa tgtagaatcc accatcaaga ttgctaagaa
     3841 aggcctgcca atcgtgtatg cagtcattgg tgcaggtgcc catcgcttta aaccactggc
     3901 agatgcctat cgtaaggttg ctcgcaactc aggtcatgat ccaaagaaaa cgaaagttgc
     3961 agcccactct tggggctgga ttgcagacga ccatgacaag gctgtggaag agtatttcta
     4021 tccaactaag gttttgacgg ataacattgc caaagaccgc ccacattgga gcgagatggc
     4081 caaggcgcaa tatctctact ctctgacaga cgaaggagca accatcgtcg gagatccaaa
     4141 acgagtcgct gaaaaaatta tcaagactat tgaaacactt gacttggacc gtttcttcct
     4201 ccatctccca atcggctcaa tgccacatga agatgtcctc cgtgctatcg aactctacgg
     4261 aaaagaagtc gcgccaattg tccgagatta ttttgccaaa aaagaagaga atcagtccca
     4321 aggctgatga gatggttgat aggatgagtt ata
//
LOCUS       DASGAC010000163         4309 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.165, whole genome shotgun sequence.
ACCESSION   DASGAC010000163 DASGAC010000000
VERSION     DASGAC010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4309
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.165"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            23..1369
                     /gene="gdhA"
                     /locus_tag="U1335_001856"
     CDS             23..1369
                     /gene="gdhA"
                     /locus_tag="U1335_001856"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011999806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HEM5232312.1"
                     /translation="MSNAKAYIQASFEAVKARNPHETEFLQAVEELFSTLEPVFEAHP
                     EYIEENILARIVEPERIISFRVPWTDKDGNVQVNRGYRVQFNSAVGPYKGGLRFHPTV
                     NQSILKFLGFEQIFKNVLTGLPIGGGKGGSDFDPKGKTDAEIMRFCQSFMTELQKHIG
                     PSLDVPAGDIGVGGREIGYMYGQYKRLRQFDAGVLTGKPLGFGGSLIRPEATGYGLVY
                     FTDNMLAANGKSFKDQTVLISGSGNVAQYAVQKATELGAKVISVSDSNGYIIDETGID
                     FDLLVDIKEKRRARLTEYAAEKATAKYFEGSVWNYDGKADIALPCATQNEINGEQAAA
                     LVKNSVYCVAEGANMPSDLDAIKVYKENGVLYGLAKAANAGGVAVSALEMSQNSLRLS
                     WTREEVDGRLKDIMANIFNTAKETAEKYDLGTDYLAGANIAAFEQIADSMIAQGLV"
     gene            complement(1604..2188)
                     /locus_tag="U1335_001857"
     CDS             complement(1604..2188)
                     /locus_tag="U1335_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4352 domain-containing protein"
                     /protein_id="HEM5232313.1"
                     /translation="MQTKDFVVENGQMYYKKKPLHKQPLFWTTIAGAVLSFILGVTCF
                     IFMIGLSLSGTSDSWDSEGYFDDTKTYTEYQVGDSVDFSDGLQITVTSMGKDDSLALV
                     DDYYSSAYVVEMEVENSTAEELYFDEYYFSLMDPVSQIPFTLDLRTYDVNLVEKLNPG
                     EKVQVKLIYGIDNETNFGFTYEDAMWTELVAEGI"
     gene            complement(2199..3047)
                     /locus_tag="U1335_001858"
     CDS             complement(2199..3047)
                     /locus_tag="U1335_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEM5232314.1"
                     /translation="MNDFITKYLSQFNIEAIVTAGLNKVLSLVLLFVAFYIIKKIAKA
                     SVKKVLVPSLKVSTQDIGRQKTISRLVESILNYLLYFILIYCILSILGLPVSSLLAGA
                     GIAGVAVGLGAQGFLSDLVNGFFILIERQFDVGDVVKLTNGPITISGTIVSMGIRTTQ
                     VRDADGTLHFIPNRNILVVSNQSRGDMRAQIDIPLKFNTDLEQVYHVIEEVNLREISN
                     FDQITGVTVLGPQNAISGQFIFRVNLFVANGQQNKIYHQFFGFYQDALRQAGIDLPSS
                     GPTVLK"
     gene            3285..3870
                     /locus_tag="U1335_001859"
                     /pseudo
     CDS             3285..3870
                     /locus_tag="U1335_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611577.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            4065..4223
                     /locus_tag="U1335_001860"
     CDS             4065..4223
                     /locus_tag="U1335_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014931950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
                     /protein_id="HEM5232315.1"
                     /translation="MSLLETAKRHGLDAEKYMTYLLEHLPNEETLAKKEVLEAYLPWD
                     KNIKRACK"
BASE COUNT         1388 a          898 c          840 g         1183 t
ORIGIN      
        1 aaaaaagaaa tcaggtgatc ccatgtcaaa tgccaaagct tacatccaag cttcttttga
       61 agcagtcaaa gcccgcaacc cacatgaaac agaattcctc caagctgtag aagagctctt
      121 ctctacactt gaacctgttt ttgaagcaca tccagaatac atcgaagaaa acatcttggc
      181 ccgtatcgtt gagcctgagc gtatcatcag cttccgtgtt ccatggacag ataaagatgg
      241 aaatgttcaa gtcaaccgtg gctaccgtgt tcagttcaac tcagctgtag gtccttacaa
      301 gggcggcctt cgcttccacc caactgtaaa ccaatccatc ttgaagttcc tcggttttga
      361 gcaaatcttc aaaaacgtct tgactggtct tccaatcggc ggtggtaaag gtggttcaga
      421 ctttgatcct aaaggaaaaa ctgatgctga aatcatgcgc ttctgccaaa gcttcatgac
      481 tgaattgcaa aaacacatcg gaccttcact tgacgtccct gctggtgaca tcggtgtcgg
      541 tggtcgtgag attggttaca tgtacggtca atacaaacgc ctccgccagt ttgatgcagg
      601 tgtcttgact ggtaaacctc ttggcttcgg tggttcatta atccgcccag aagcaacagg
      661 ctacggcttg gtttacttta ctgacaatat gttggcagca aacggtaaat ccttcaaaga
      721 ccaaactgta cttatctcag gttctggtaa cgttgcccaa tatgctgttc aaaaagcgac
      781 tgaacttggt gcaaaagtta tttctgtttc agactcaaat ggttacatca ttgacgaaac
      841 tggtatcgac ttcgacctct tggtggacat caaagaaaaa cgccgcgctc gtttgacaga
      901 atacgctgca gaaaaagcaa ctgctaagta cttcgaaggt tctgtatgga actacgacgg
      961 caaggctgat attgcccttc catgtgcgac tcaaaacgaa atcaacggtg agcaagctgc
     1021 tgcccttgtg aaaaacagtg tatactgtgt ggctgaaggt gccaacatgc catctgacct
     1081 tgatgctatc aaagtttata aagaaaacgg cgttctttac ggtcttgcaa aagctgccaa
     1141 cgctggtggt gtagccgtat ctgcccttga aatgagccaa aacagccttc gtctttcatg
     1201 gactcgtgaa gaagtagatg gtcgtctcaa agacatcatg gcaaacatct tcaacaccgc
     1261 taaagaaact gctgaaaaat acgaccttgg tacagactac ctcgcaggtg ctaacatcgc
     1321 agcctttgag caaattgcgg atagcatgat tgcccaaggt ttggtataag cttactttta
     1381 gtttactaaa ctataataaa aatgtctcca aaattgacgt gccaattttg ggggtatttt
     1441 tcattaaaag aagaggagaa cagtggataa acatgttctc ctttttaaaa tgtaaaaata
     1501 acagataggt cggatatagt acaattacca agccgaacaa tctgaaccaa ggggcgttgt
     1561 aaacccgtaa attgtgcagt atttaaaact ttttctacag caattagata ccttctgcga
     1621 ctaattccgt ccacatagca tcttcgtagg taaaaccaaa gtttgtttca ttatctatac
     1681 cgtagataag ttttacttgt actttctctc ctggattcag cttttcaact agattcacat
     1741 cataggtccg caaatccaga gtaaagggaa tctgactaac aggatccatg agactgaaat
     1801 agtattcgtc aaaatagagt tcttctgcgg tcgaattctc aacttccatt tcaacaacat
     1861 aagctgaact ataataatca tcaaccagag ctagactgtc atccttgccc atcgaagtca
     1921 ctgtaatctg taaaccatct gaaaaatcaa cactatctcc cacttgatat tctgtgtagg
     1981 tcttcgtatc atcgaaataa ccctctgaat cccaagaatc acttgtacct gacaagctta
     2041 aaccgatcat aaaaataaaa caggttactc ctaggataaa ggagagaacg gcaccagcaa
     2101 tggttgtcca aaagagaggc tgtttgtgca agggtttctt cttataatac atctgcccat
     2161 tttcaacgac aaaatctttt gtttgcatca taaactcctt attttaaaac agttggccca
     2221 cttgaaggta aatctattcc tgcttgacgc agggcatctt gataaaaacc aaagaattga
     2281 tgatagatct tgttctgttg accgttggct acaaaaagat taacacgaaa tataaactgt
     2341 cccgaaatag cgttttgggg acctaataca gtcacacctg taatctggtc aaaattgctg
     2401 atttctctca aattgacctc ttctattacg tgatagactt gttccaaatc tgtattaaat
     2461 ttgagcggaa tatcaatttg agcacgcatg tcccctcttg actgattgga caccactaga
     2521 atgttgcgat taggaataaa atgcaatgtc ccatctgcat cacgtacttg tgttgttcgg
     2581 attcccatgc taacgatggt tcctgaaatg gtaatgggcc cgttggttaa cttaaccaca
     2641 tctccgacgt caaactgtcg ttcaattaag ataaagaatc cattgaccaa gtctgagaga
     2701 aaaccttgtg cgcccagccc aacagctacc ccagcaatcc cggctcctgc aagaagactg
     2761 gataccggta aaccgaggat actcaaaata cagtagataa ggataaagta gagtaggtaa
     2821 tttaggatac tttccaccag acgactaatg gtcttctgac gtccaatgtc ttgtgtagat
     2881 acctttagag agggaaccaa aacctttttc acagaagctt tggctatctt cttgataatg
     2941 taaaatgcaa caaagagtaa aacaagcgat aaaaccttat ttagacctgc tgtcacaatg
     3001 gcctcaatat taaattgaga caaatacttg gtaataaaat cattcatgag ataattatag
     3061 cagaaaaatg gggaaaaact gaaaacaaac tcaatcctaa atcattcaca ccttcttcaa
     3121 gattctccta cataacaaaa aatcctcaga aatgagaacc actcccaatc atttctgagg
     3181 attttaacgt tttattacca ttaagactcg gtgaaatagg aaaatcatac ttaaccaatt
     3241 tcaaaaactg aagtataaca gaaacatgga atttacaaaa tgaaatgatt acagagctca
     3301 aaacagctct aaaagataaa aacttagcac cttatcacaa acgtattcaa gcagtttatc
     3361 tcaaggcaat ccaaactccc tacaaattca ttattgatat gcttgatgtc tcacatgata
     3421 tgatttggag attgactaag aaatatcaag aacatagttt aacaggcctt gtttcagatg
     3481 ctagaggagg tcgtcgccac gcttatatga cagttgaaga agaagctttt ttgagtgagc
     3541 agttagcttc tgctgtaaac ggagagtttg taactgttga atccctaata actatctgaa
     3601 gcttatccca atgactacat cattttagtc atggacaacg ctatttggca caagtctaga
     3661 gcgttagaag ttccaccaaa tatccagttc gcatttatcc caccatatac cccagagatg
     3721 aatccaattg aacaagtttg ggcagaaatc cgaaaacgcg gatttaagaa cagagccttt
     3781 caaacattga aatcagtcat tgataagctc caagaaatca ttcaagggtt agatagtgaa
     3841 actataaaaa gtattgtaca tagaaaatgg atttgttcag attttgaaat cgaatgggta
     3901 ttagtcctgt ccaataatat ggctgaaagg gcaatgaaga ccttagtgat ggggtgtagt
     3961 gaaacagtct gggaatagac tgtttcagcc tgagcctaga aatgaaaaag cgaaggttgc
     4021 tgttttctca gagcttttag gacgccaagt ctacagctgt cattctgagt cttttggaaa
     4081 ctgctaagcg acacggactt gatgcagaga aatatatgac ctatcttcta gaacacttac
     4141 ctaacgagga gacgctcgca aaaaaagagg tgctagaggc ctatttgcca tgggataaga
     4201 atattaagag agcatgtaaa tagaaaaagg ttccagagtc gacaggactt tggagccttt
     4261 tacaatatac cttgttattg ggcggttaca atattttgga gcaaatgtt
//
LOCUS       DASGAC010000164         4246 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.166, whole genome shotgun sequence.
ACCESSION   DASGAC010000164 DASGAC010000000
VERSION     DASGAC010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4246)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4246)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4246
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.166"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            203..1747
                     /locus_tag="U1335_001861"
     CDS             203..1747
                     /locus_tag="U1335_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011681503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HEM5232316.1"
                     /translation="MSLQEEIKKRRTFAIISHPDAGKTTITEQLLYFGGEIREAGTVK
                     GKKTGNFAKSDWMDIEKQRGISVTSSVMQFDYAGKRVNILDTPGHEDFSEDTYRTLMA
                     VDAAVMVVDSAKGIEAQTKKLFEVVKHRNIPVFTFINKLDRDGREPLDLLQELEEVLG
                     IASYPMNWPIGMGKSFEGLYDLHNKRLELYRGDERFASLEEGDKLFGSNPFYAQVLED
                     IELLAEAGNEFSEQAILDGDLTPVFFGSALTNFGVQTFLDTFLEFAPEPHGHKTTTGD
                     VIDPLNKDFSGFVFKIQANMDPRHRDRIAFVRVVSGEFERGMAVNLPRTGKGAKLSNV
                     TQFMAESRENVENAVAGDIIGVYDTGTYQVGDTLTVGKNKFEFEPLPTFTPEIFMKVS
                     AKNVMKQKSFHKGIEQLVQEGAIQLYKNYQTGEYMLGAVGQLQFEVFKHRMEGEYNAE
                     VVMTPMGKKTVRWIKPEDLDERMSSSRNILAKDRFDQPVFLFENDFALRWFADKYPDV
                     ELEEKM"
     gene            2124..3719
                     /locus_tag="U1335_001862"
     CDS             2124..3719
                     /locus_tag="U1335_001862"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012235.1,HMM:NF012869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5232317.1"
                     /translation="MFYYLRKCKSEVLAYVLVAFVYALILAATGFVYARVSEAALSGD
                     QKAFVTSSLIAVGFFIYDTYFDYLPRYLKAKLVNRVMERTRNQLVAVYAAGDDSGNDD
                     KKSADKIHILVNHMDVLENGYLTPLLSMLTSLLVFTFSLIGALYLQGTMTLIMLALCF
                     IPFLAPLINNRILAHATQDTQSEKNAYLKLFSEFVHSLTFIRISTITPIFEEKLQASS
                     QEYARRANHFSKKQSQTYAVSYGLSSVVYSGAWIIGGIFVFQGLLKISDLIAMTTLMG
                     TVAGPIQTMSGLVTDYLASRTVVADLTTILQGQFQENEAKEELTETIDSISLETITYE
                     QNNHRLFDRFSYRFLANRKYAILGKSGSGKTTLLRLLLGVQKADEGRVLVNQTNLADL
                     EQTSVFGKIYYLPQKTAIFSASIGENLSLFGPLDQDKALTCLSRVGLLDWFERQENGF
                     ATLLSSAQQLSGGEERRFDIARALYRDAEVLLFDEPTTGLDTRNESLIAETLSKIEDK
                     LVIVVTHSQNEEFLGLFDERLVL"
     gene            3787..4170
                     /locus_tag="U1335_001863"
     CDS             3787..4170
                     /locus_tag="U1335_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEM5232318.1"
                     /translation="MGLFSGLMGNASQMNNDKVEQELGNILLANEQVEMAFSLVHDLI
                     VFTEYRLILVDKQGISGKKVAYKSIPYQSISRFTVETSGHFDLDAELKIWISSAAEPA
                     ETLQFKSDKSVIAIQKALAAAVLGK"
BASE COUNT         1141 a          878 c         1020 g         1207 t
ORIGIN      
        1 ctaagatgat taataaaatt gactttacca gcgtttgaaa aatccatgcg aatccgttat
       61 aataaaagag ttgcactgca gctcttttgt ttttaagctg cactagcaaa gaatgaggat
      121 taaacaaatg taaattgaag taaattagag ctaagctctg ctatgtatca aaaaaagaat
      181 aagaaaaaga aaaggaaaca ttatgtcact acaagaagaa atcaagaaac gccgcacctt
      241 tgcgattatc tctcacccgg atgcgggtaa gaccactatt accgagcagt tgctctactt
      301 tgggggcgag attcgtgagg ctggtacggt caaggggaaa aagactggta actttgccaa
      361 atctgactgg atggatatcg agaaacagcg tggtatctct gttacctcgt ctgttatgca
      421 gtttgactat gcgggcaagc gggtcaatat cctggataca ccagggcatg aggacttctc
      481 agaagatact tatcggacct tgatggcggt cgatgcggct gtcatggtgg tggactctgc
      541 caagggtatc gaggcccaga ccaaaaagct ctttgaggtt gttaagcacc gcaacattcc
      601 tgttttcact tttatcaaca agttggaccg tgacggtcgt gagccacttg atttgttgca
      661 ggagttggag gaagtcttgg gcattgccag ctacccgatg aactggccga ttggtatggg
      721 gaaatccttc gagggacttt atgacctcca caacaaacgc ttggagctct accgaggtga
      781 tgagcgattt gcgagtctgg aggaaggcga caaactcttt ggctcaaatc ctttttacgc
      841 acaggtcttg gaggatatcg aacttctggc ggaagctgga aatgaattct cagaacaggc
      901 tatcttggac ggggatttga cacctgtttt cttcggctca gccctgacca actttggtgt
      961 gcagaccttc cttgatacct tcttggagtt tgctccagag ccacatggtc acaagacgac
     1021 aactggtgat gtcattgatc cgctcaacaa agatttttca ggctttgtct tcaaaatcca
     1081 agccaacatg gaccctcgtc accgcgaccg cattgccttt gtccgtgtgg tttcgggcga
     1141 atttgaacgc ggtatggcgg tcaacctgcc tcgtacaggt aagggagcca agttgtccaa
     1201 cgtgacgcag ttcatggcag agtcccgtga gaatgtggaa aatgcagtag cgggtgacat
     1261 tatcggggtg tacgatacag gaacctacca ggtaggagat accttgaccg taggcaagaa
     1321 caagtttgag ttcgaaccgc taccaacctt taccccggaa attttcatga aggtttctgc
     1381 taaaaacgtc atgaaacaaa aatccttcca caagggaatc gagcaactgg tgcaagaagg
     1441 tgcaatccag ctctataaga actaccagac tggcgagtat atgctgggtg ccgttggtca
     1501 gctccagttt gaagtcttca aacaccgcat ggaaggtgag tacaatgctg aggtagtcat
     1561 gaccccaatg ggtaaaaaga cggtccgctg gatcaagcca gaagacctgg atgaacgcat
     1621 gtcatcaagc cgcaacatcc tagccaaaga ccgctttgac caaccagttt tcctttttga
     1681 aaacgacttc gccctccgct ggtttgcgga caagtatccg gatgtggagt tggaagagaa
     1741 gatgtagcaa acatctggga gatgtttgct atcgggagat gggaactgac ggtagtcaga
     1801 ttacagctgt tcagctttga aaatcaagtt aaaacttcgt taagtcgctt cgatgaacct
     1861 taagttcaat cttcagctcc ttgcctagtt ttattcttga ttttctttgt gtattaaagt
     1921 cagtattcag cttcgaaaat caagctaaaa ctttcttaag tcgctttgat gaacctcaag
     1981 tttaatcttc gaccaattca atccaatacc aataagaagt caggcaagtc ctggcttttt
     2041 ttaattttgt tatcattgca aaaaaagtat tattataata tactatagtt atataaatgg
     2101 aaatggattg gaggtcttat cccatgtttt actaccttag aaagtgtaag tcggaggtgc
     2161 tggcctatgt cttggtagct tttgtctatg ctctgatttt ggcagcgaca ggttttgttt
     2221 atgctagggt ttcagaggcg gctctgtccg gtgaccaaaa ggcatttgtg accagttcac
     2281 tcatagcggt gggctttttc atctacgata cctactttga ctacctgcct cgttatctca
     2341 aggccaagtt ggttaatcgt gtcatggaaa ggactcgcaa tcagctggtg gctgtctacg
     2401 cagctggcga tgattcagga aatgatgaca aaaagagtgc tgacaagatt cacattttgg
     2461 tcaaccacat ggatgtcttg gaaaatggtt atctaacacc gctcttgtct atgttgacca
     2521 gtcttcttgt ctttaccttt tcactaattg gtgcccttta tttgcaaggg accatgacgc
     2581 tgattatgct ggctttgtgc ttcattcctt tcctagcacc cctgatcaat aatcgtatcc
     2641 ttgctcatgc cactcaagat actcagtcgg agaagaatgc ctacctcaag ctctttagtg
     2701 agtttgttca ttctctgacc tttatccgaa tcagcaccat tacgccgatt tttgaagaga
     2761 aactccaagc atccagtcag gaatatgcta ggcgagccaa ccatttttcc aaaaaacaat
     2821 ctcagaccta cgctgtgtcc tatggtttga gtagtgtggt ttattcgggt gcctggatta
     2881 ttggcggcat ctttgtcttt caaggcctgt tgaagatttc agacctgatt gccatgacca
     2941 ccctcatggg aacggtggct ggccctatcc aaaccatgtc tggactggta acggattacc
     3001 tggctagtcg gactgttgtg gcagatttga cgacgatttt gcaggggcaa ttccaggaaa
     3061 atgaagccaa ggaagaactg actgaaacca ttgacagcat cagcttggaa acgattacct
     3121 atgagcagaa taatcaccgc ctctttgata ggttttccta tcgttttctt gctaatagaa
     3181 aatatgccat tctaggaaaa agcggcagtg gcaagacgac cttgctccgt ctgctgctgg
     3241 gggttcagaa agcagatgag ggaagggtct tggtcaacca gaccaatctt gcggacctag
     3301 aacagacctc tgtttttgga aaaatctact atcttcctca aaaaacggct attttctcag
     3361 ctagtatcgg ggaaaatctg agcctttttg gtcccttgga tcaggacaag gctctgactt
     3421 gcttgagcag ggttggtctg ctagactggt ttgaacgaca ggaaaatggt ttcgccaccc
     3481 tgctatcctc tgcccagcaa ttatcgggag gggaggagcg gcggtttgat atagctagag
     3541 ccctctatcg tgatgcggaa gtcttgttat ttgatgagcc aacgacgggc ttagatacta
     3601 gaaatgaaag tttaattgcg gaaaccttgt ccaagattga ggataaattg gtcatcgtcg
     3661 tcacccattc gcagaatgaa gaatttctag gcttgtttga cgagaggctt gtattatagg
     3721 ctggttttta ctttgtttcc tgtaagtttt tcggtaaaat atggaaaagt aaaaaaggag
     3781 taacacatgg gtttgttttc aggtttgatg ggcaatgcct cacagatgaa taatgacaag
     3841 gtagagcagg agctagggaa tattttattg gctaatgaac aagtagagat ggcctttagt
     3901 ttggtccacg acctgattgt ctttaccgag tatcgcttga ttttagtgga taagcaaggg
     3961 atttctggta agaaggtagc ctataagtct attccttacc agtccatttc acgttttacg
     4021 gtcgaaactt ctggtcattt tgatttagat gctgagctca agatttggat ttcttctgcg
     4081 gcagagcctg ctgaaaccct ccaattcaag agtgacaaga gtgttattgc tatccaaaaa
     4141 gctctggctg cggctgtttt gggaaaataa attgttagaa agaatgttgg aatcttatcc
     4201 agcattcttt ttttatctag caaatgcgat agcttgccag atatag
//
LOCUS       DASGAC010000165         4231 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.167, whole genome shotgun sequence.
ACCESSION   DASGAC010000165 DASGAC010000000
VERSION     DASGAC010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4231)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4231)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4231
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.167"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            107..976
                     /gene="rfbA"
                     /locus_tag="U1335_001864"
     CDS             107..976
                     /gene="rfbA"
                     /locus_tag="U1335_001864"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002276675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HEM5232319.1"
                     /translation="MKGIILAGGSGTRLYPLTRAASKQLMPIYDKPMIYYPLSTLMLA
                     GIKEILIISTPQDLPRFKDMLGDGSELGITLSYAEQPSPDGLAQAFIIGEDFIGDDNV
                     ALILGDNIYHGNGLTKMLQRAASKEKGATVFGYQVKDPERFGVVEFDADMNAISIEEK
                     PEEPKSNFAVTGLYFYDNDVVEIAKNIKPSPRGELEITDVNKAYLERGDLSVELMGRG
                     FAWLDTGTHESLLEAAQYIETVQRLQNVQVANLEEIAYRMGYITKEQVHELAQPLKKN
                     EYGQYLLRLIGEA"
     gene            976..1569
                     /locus_tag="U1335_001865"
     CDS             976..1569
                     /locus_tag="U1335_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018029578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEM5232320.1"
                     /translation="MTENFFGKTLAARPVEAIPGMLEFDIPVHGDNRGWFKENFQKEK
                     MLPLGFPESFFTEGKLQNNVSFSRKNVLRGLHAEPWDKYISVADGGKVLGTWVDLREG
                     ETFGNTYQTVIDASKGIFVPRGVANGFQVLSDFVAYSYLVNDYWALELKPKYAFVNYA
                     DPSLDIQWENLEEAEVSEADENHPLLKDVKPLRKEDL"
     gene            1569..2054
                     /locus_tag="U1335_001866"
     CDS             1569..2054
                     /locus_tag="U1335_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEM5232321.1"
                     /translation="MFQAFLEIAEQLNKLGITPLLMGSVGLERRTGRDWQARDLDIHV
                     PSDPRGWEAPDEERIYRADELIVLMNQLGYVLVDRHEHEFHKDGLSVEFGGLHSLPEF
                     AGVELEDLEELETAGVRYYLPTLEQYLKIYQASSKDSYRAENNNQKDFAKIAYLKEVL
                     K"
     gene            2243..3289
                     /gene="rfbB"
                     /locus_tag="U1335_001867"
     CDS             2243..3289
                     /gene="rfbB"
                     /locus_tag="U1335_001867"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000134275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HEM5232322.1"
                     /translation="MSQFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN
                     KANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTN
                     FIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSP
                     YSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY
                     GEGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKD
                     AYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTNFSEGLEETIQWYTDNQDWWKAEKE
                     AVEANYAKTQEVIK"
     gene            3344..4195
                     /gene="rfbD"
                     /locus_tag="U1335_001868"
     CDS             3344..4195
                     /gene="rfbD"
                     /locus_tag="U1335_001868"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019780653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HEM5232323.1"
                     /translation="MILITGANGQLGTELRYLLDERGVEYVAADVAEMDITDADKVDA
                     FFAEVKPSVVYHCAAYTAVDMAEDEGKELNYKINVTGSENVAKAAAKYGAVLVYISTD
                     YVFNGDLPVGQEWQVDDQPDPQSEYGRTKRLGEEAVEKFADKFYTVRTAWVFGNYGKN
                     FVFTMQNLAETRDTLTVVNDQHGRPTWTRTLAEFMVHLVETGQEFGYYHLSNDAAEDT
                     TWFDFATEILKDANIKVLPVDSSQFPAKAKRPFNSTMNLDKAKATGFVIPTWQEALEA
                     FYKQEKR"
BASE COUNT         1282 a          845 c          971 g         1133 t
ORIGIN      
        1 aagaaatttt tcatgcgtat gacgtaaaca gccacttttt cttatatcat gaatttgaaa
       61 agtatggtat aatagactga atatatttta gggaaggtac tcttatatga aaggtattat
      121 tctagcaggt ggatcaggta cacgtctgta tcctctgaca cgagcggctt caaaacagtt
      181 gatgccaatt tacgataaac caatgattta ttatccattg tcaacattga tgttggctgg
      241 tattaaagaa atcttgatta tctcaactcc tcaggatctt cctcgtttta aggacatgct
      301 gggagacggc tcagaacttg gaatcacctt gtcatacgct gagcaaccaa gtccagatgg
      361 tttagcgcaa gcctttatta tcggtgaaga ctttatcggt gatgacaacg tagccttgat
      421 tcttggtgat aacatctacc acggtaatgg attgaccaag atgttgcaac gtgcagccag
      481 caaagaaaaa ggcgcgactg tctttggtta tcaagtcaaa gacccagaac gttttggtgt
      541 tgtggagttt gacgctgata tgaatgccat ctctatcgaa gaaaaacctg aagagccaaa
      601 atcgaatttt gctgttactg gtctttattt ctatgacaat gatgttgtcg aaattgctaa
      661 aaatatcaag ccttcacctc gtggcgagtt ggaaatcaca gatgtcaaca aggcttactt
      721 agaacgcggc gacttatctg ttgagcttat gggccgtgga tttgcttggt tggatacagg
      781 tacgcatgaa agccttttgg aagcggcgca gtacatcgaa acggttcaac gtttgcaaaa
      841 cgttcaagtg gctaacttgg aagaaattgc ttaccgcatg ggctacatta caaaagaaca
      901 agtacatgaa ttggcacagc cacttaagaa aaatgaatac ggacaatact tgctccgttt
      961 gattggagag gcctaatgac agaaaacttt ttcggtaaaa cactagcagc tcgcccagtt
     1021 gaagctattc caggaatgtt agaatttgac attcctgttc atggcgacaa ccgtggctgg
     1081 ttcaaggaaa atttccaaaa ggaaaaaatg ttgcctctcg gctttcctga aagcttcttt
     1141 acagaaggga aattgcagaa taatgtttct ttctcccgca aaaacgttct tcgtggtctt
     1201 cacgcagagc cttgggataa atacatttca gtagcagacg gcggtaaggt tttgggaact
     1261 tgggtcgatc tacgtgaagg cgaaaccttc ggtaatacct accaaaccgt tatcgatgct
     1321 tcaaaaggta tcttcgttcc gcgcggagta gccaatggtt tccaagtctt gtcagacttc
     1381 gtggcttaca gctacttggt caacgactac tgggctttgg aactcaagcc taagtatgct
     1441 ttcgtcaact acgctgaccc gagccttgac atccagtggg aaaacctaga agaagcggaa
     1501 gtttcagaag cagatgaaaa tcacccactc ctcaaagacg tcaagccttt gagaaaagag
     1561 gacctctaat gtttcaagcc tttttggaaa tagcagagca gttaaacaag ttaggaatca
     1621 ctcccttgtt aatgggctca gttggtttgg aaaggcggac aggacgagat tggcaggcaa
     1681 gggaccttga tattcatgtg cccagtgacc cacggggatg ggaagcgcca gatgaggagc
     1741 ggatttaccg tgcagatgag ctgattgttc tgatgaatca acttggctat gtcctggttg
     1801 accgtcatga acatgaattt cataaagatg gcttatctgt tgaatttgga ggcctacatt
     1861 cactgcctga atttgctggt gtagagctag aagatttgga agaactagaa acagcaggtg
     1921 ttcgctatta cctaccgaca cttgaacaat acctgaaaat ctaccaagcc tcttcaaaag
     1981 attcctaccg agcagaaaat aacaatcaaa aagactttgc taagattgct tacttgaaag
     2041 aagtattgaa gtagtctggt aatgcaagag ggcgagcatc gcgagcccaa agcgatagtt
     2101 tccgccgtag tgaaaataca taatcttaca ggggaaattt tgaaacctta gcttcaaaat
     2161 ttagccgtga aaccgaaggt ttgctggcgt ccccgctacc taaggaaact atcaaaaaaa
     2221 gaaaaacttt tcggagaaaa aaatgtctca atttaaaaat attatcgtaa ctggtggagc
     2281 tggtttcatc ggttcaaact ttgtacacta tgtatataac aatcatccag acgttcacgt
     2341 aactgttttg gataaactta cttatgcagg aaacaaggct aacttggaag ctattcttgg
     2401 tgaccgtgtt gagttggttg ttggcgatat tgcagatgct gaattggttg acaaattagc
     2461 agctaaggca gatgccattg ttcactatgc agcagaaagc cacaacgaca actctctcaa
     2521 tgatccaagc ccatttatcc ataccaactt tatcggtact tacactcttc ttgaagcggc
     2581 tcgtaaatac gacatccgtt tccaccatgt atcaacagat gaagtgtatg gcgatcttcc
     2641 tttgcgtgaa gatttgccag gtcatggcga aggtccaggt gagaaattta ctgcagaaac
     2701 caactacaac ccatcatcac cttactcatc aaccaaggct gcttcagact tgattgttaa
     2761 agcatgggtg cgttcatttg gtgtcaaagc aactatttca aactgttcaa ataactacgg
     2821 tccttaccaa cacatcgaga aatttatccc acgccaaatc actaacatct tggcaggtat
     2881 taagccaaaa ctttacggtg aaggtaaaaa cgttcgtgac tggattcata ccaacgacca
     2941 ctcgactggt gtttgggcaa tcttgacaaa aggtcgtatg ggtgaaactt acctgattgg
     3001 tgctgacggt gagaaaaaca ataaagaagt gcttgaattg attcttgaaa aaatgggtca
     3061 accaaaagat gcttacgacc acgtgactga ccgtgcagga cacgatttgc gctatgctat
     3121 tgatgcaagc aaacttcgtg atgagcttgg ctggacaccg cagtttacca acttctctga
     3181 aggtttggaa gaaactatcc agtggtatac agataaccaa gactggtgga aggctgaaaa
     3241 agaagctgtt gaagccaact atgctaagac acaggaagtt attaagtaag actattaaag
     3301 gctagggctt tggcccaagc ctttcttgaa acgaggagca aacatgattt taattacagg
     3361 tgcaaatggt cagttgggga cagaattgcg gtatctcttg gatgagcgtg gtgtcgagta
     3421 tgtggctgct gacgtagcag aaatggatat tacagatgca gataaagtag acgccttctt
     3481 tgcagaagta aagccaagcg ttgtatacca ctgtgctgct tatacagcag ttgatatggc
     3541 tgaagacgag ggcaaggaac tcaactacaa gattaacgta acaggctctg agaatgttgc
     3601 caaggcagca gctaaatacg gtgcagtctt agtctatatc tcgacagact atgtttttaa
     3661 cggtgatttg ccagtcggcc aagagtggca agtagatgac cagccagatc cacaatctga
     3721 atacggtcgt accaagcgct tgggtgagga agcagtcgag aaattcgcag acaagttcta
     3781 cacagttcgt actgcatggg tctttggtaa ctacggtaaa aactttgttt tcaccatgca
     3841 aaatcttgcg gaaacccgcg atactttgac ggttgtcaat gaccaacacg gtcgcccaac
     3901 ctggacacgc acacttgcag aatttatggt tcacttggtt gaaactggtc aagaatttgg
     3961 ctattatcat ttgtcaaatg atgcagcaga agatacaact tggtttgact tcgcgacgga
     4021 aattcttaag gatgctaaca tcaaagtatt gccagtggat tctagccaat tcccagctaa
     4081 ggctaagcgt cctttcaatt caacaatgaa tttggataag gcaaaagcca caggttttgt
     4141 catcccgacc tggcaagagg ctctggaagc tttctataag caggagaaaa ggtagtattt
     4201 gataactaga agtggtttat ttaagtgaaa t
//
LOCUS       DASGAC010000166         4169 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.168, whole genome shotgun sequence.
ACCESSION   DASGAC010000166 DASGAC010000000
VERSION     DASGAC010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4169)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4169)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4169
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.168"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            34..1125
                     /gene="serC"
                     /locus_tag="U1335_001869"
     CDS             34..1125
                     /gene="serC"
                     /locus_tag="U1335_001869"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HEM5232324.1"
                     /translation="MTIYNFSAGPAVLPKPVLERAQAEFLDYNGSGMSVLEMSHRSKD
                     FDDIIKGAEATLRELMGIPDNYKVIFLQGGASLEFTMIPLNFAQGKKAYYLVGGSWGK
                     KAYTEAVKLSKTIAFEPILLGSTEDITYAELPTFDKNDIDPNAAYVHLTTNNTIEGTA
                     VYDIPDTNGVPVIADMSSNILAARYNVEDFAMIYAGAQKNIGPAGVTVVIVREDFLND
                     QPMISSMLDYRIQAENESLYNTPPAYSIYISKLVFEWVKEIGGVDEMEKINREKSGLL
                     YDYIDQSNFYTNPVRKKEERSVANIPFVSPSEELDAKFVKEATAAGFKNIKGHRSVGG
                     MRASLYNAFPRQGVVELIEFMKKFAAENA"
     gene            1125..1682
                     /locus_tag="U1335_001870"
     CDS             1125..1682
                     /locus_tag="U1335_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5232325.1"
                     /translation="MEIRLAHPNEMEAIVNILEDARAFLATSGINQWQGEYPNKEDIF
                     DDILSGRGYVGLVDGKVAAYAAVHRGQEAEYEAIYEGKWQHNHPVYTTFHRIAAADEF
                     RGQGIIQTFLQGLIEGQKGPDFRCDTHEQNKTMQHILKKLGYVYCGKVPIDGERLAYQ
                     KIKHKSERSLYQEISEDDRWLLGNN"
     gene            2055..3236
                     /locus_tag="U1335_001871"
     CDS             2055..3236
                     /locus_tag="U1335_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEM5232326.1"
                     /translation="MVFSVRTFNNINQVGLKELGNRFQIDGDHAANPDAFIIRSENLH
                     GFDFPENLKAIARAGAGTNNIPIEKATEKGIVVFNTPGANANAVKEAVIASILLSARD
                     YIGATAWANTLSGDDVPKQVEAGKKQFAGTEISGKTLGVIGLGAIGARIANDARRLGM
                     NVLGYDPYVSIETAWSISSHVKRVDDLKEIFSNADYITVHVPLTDKTRDLFNADSFGQ
                     MKKGTTLINFARGELVNNADLFEAIEAGVIKNYITDFGTEEVLNKDNIIVFPHVGGST
                     EEAELNCAIAAGQTIRRFMETGEIINSVNFPNVKQFLDAPYRITLINKNIPNMVAKIT
                     TAVSELGINIDNIINKSKGDYAYTLLDLDEADKVKIEQLVAKFEATDAIVKVRVIQNK
                     N"
     gene            3238..3732
                     /locus_tag="U1335_001872"
     CDS             3238..3732
                     /locus_tag="U1335_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEM5232327.1"
                     /translation="MYVKTIYQSPLGPMSLVASDRGLRGAWFEDQKYFERGLREEPVL
                     GSHPILDQTSLLLDAYFSGQDVDFTSLPLEAIGTEFQEKVWALLKEIPHGQTTSYGQL
                     AQQLGVCSGQAVGGAVGRNPYSIIVPCHRVLNQKGQLTGYAGGLDKKIWLLQHENPHF
                     EVKK"
     gene            3729..4082
                     /locus_tag="U1335_001873"
     CDS             3729..4082
                     /locus_tag="U1335_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase family protein"
                     /protein_id="HEM5232328.1"
                     /translation="MILYYEYPKCSTCRAAKAELKSLGLEFEAIDIKSTPPSAEELKA
                     WMEATGLELKKYFNTSGNSYRELGLKDKFDSLTVDQALDLLANDGMLIKRPLLIQDGK
                     ILQIGYRTKYENLGL"
BASE COUNT         1261 a          800 c          953 g         1155 t
ORIGIN      
        1 ataataaaca tattacattt ttggagggat tttatgacaa tctacaactt ctctgcaggt
       61 cctgcagtat tgccaaaacc agtacttgaa cgcgcccaag ctgaattctt ggactacaat
      121 ggttcgggaa tgagtgtttt ggagatgtcc catcgctcca aggacttcga tgatattatt
      181 aaaggtgcgg aggcaactct gcgtgaactc atgggcattc ctgataacta caaggtgatt
      241 ttcttacaag gtggagcatc tttggagttc acaatgattc ccctcaactt cgctcaaggc
      301 aagaaagcct actatcttgt aggtggctca tggggtaaaa aagcctatac tgaggctgtg
      361 aagctgtcta aaacaattgc ctttgaacca attttgcttg gatcaacgga agatattacc
      421 tatgcagaat tgccaacctt cgataaaaat gatattgatc caaacgctgc ctatgtgcat
      481 ttgacaacca acaataccat tgaaggtaca gctgtttacg acattccaga taccaacggt
      541 gtgccagtca ttgctgatat gtcttcaaac atcttggcgg ctcgctacaa tgtggaagac
      601 tttgccatga tttatgcagg tgctcagaag aacattggtc ctgctggtgt gacggtggtg
      661 attgttcgtg aggacttcct caatgatcaa ccaatgattt caagcatgtt ggattaccgc
      721 attcaagcag aaaatgaatc actttacaat acaccgccag cttactctat ctacatttct
      781 aaacttgtct ttgaatgggt caaggaaatc ggtggtgtgg acgaaatgga gaaaatcaac
      841 cgtgaaaagt ctggtttgct ttatgactat atcgatcagt ctaatttcta tacaaaccct
      901 gttcgtaaaa aagaagagcg ttcagtagcg aacattcctt ttgtctcacc aagtgaagaa
      961 ttagatgcca aatttgtcaa agaagcaaca gcagctggtt ttaaaaacat caaaggtcac
     1021 cgttcagtag gtgggatgcg ggcgtcgctc tataatgctt tcccacgtca aggtgtggtt
     1081 gaattgattg aattcatgaa aaaatttgca gcggagaatg cataatggaa atccgtcttg
     1141 cacatccaaa tgagatggag gctattgtca atattcttga agatgctcgt gcatttctag
     1201 caacctccgg tatcaatcaa tggcagggag agtatccaaa taaagaggat atctttgatg
     1261 acattctttc tggcagaggt tacgttggtc tagttgacgg taaggtggca gcttatgccg
     1321 ccgttcatcg tggtcaagaa gcagaatatg aggccatata tgaaggaaaa tggcagcaca
     1381 atcatcctgt atatacaaca tttcatagaa ttgcagcagc tgacgaattt cgtggtcaag
     1441 gaatcataca aacttttttg caaggtttaa ttgaaggtca aaaaggaccg gatttccgct
     1501 gtgataccca cgagcagaat aagacaatgc agcacattct aaaaaaatta ggctatgtct
     1561 attgtggtaa ggtcccaata gatggagaac gtctagccta tcaaaaaatc aagcacaaga
     1621 gcgagcggag tctttaccag gaaatcagtg aagacgaccg ttggttgcta ggtaacaact
     1681 aaaaaaaacg aaagcaaagg gacgaggcaa cagctcatta ctacttctca aggttcgagt
     1741 caacatctca gcacagtggt tgattgggtt taacagtcca gtggactgtt aaaggttgga
     1801 gataagattt gcgaagcaaa tctcagcagt tcgtatttta cactccaaat ctgacctata
     1861 cgactgatgc gaacagagtt cgcttcatct ccaacctcaa actgtctccc agacagtttg
     1921 agctgtgcgg gggtgggagt gaaacagtct ggggatagac tgtttcagct caacaactag
     1981 aaataaagac ttgttgacga acttttctgt agttaggtga gttctttccc actccccttt
     2041 ttaggtaaaa ataaatggta tttagcgtac gtacttttaa caatattaac caagttggtt
     2101 tgaaggaatt gggtaatcgt ttccagattg atggtgacca tgcggccaat ccagatgcct
     2161 ttatcatccg ttctgaaaac ttgcatggct ttgattttcc cgaaaatctg aaagccattg
     2221 cccgtgcagg agcagggact aataacattc ctattgagaa agctactgag aaagggatcg
     2281 tggtcttcaa tactccagga gccaatgcca atgccgtaaa agaagcggtt attgcctcta
     2341 ttcttttgtc tgcccgtgac tatatcggag cgacagcttg ggcaaataca ttgtcaggag
     2401 atgatgtgcc taagcaggtt gaagcaggta agaagcagtt tgctgggaca gaaatttcag
     2461 gtaagactct tggtgttatc ggacttggtg ctatcggtgc gcgcattgct aacgatgccc
     2521 gccgtctggg aatgaatgtt ctcggttacg atccttatgt atcgattgaa acggcttgga
     2581 gcatttccag ccatgtcaaa cgcgtggatg atttgaaaga aatctttagc aacgcggatt
     2641 acattactgt tcatgttcct ttgacagaca agacgcgcga tttgttcaat gcagatagct
     2701 ttggtcaaat gaagaaagga acaaccttga taaactttgc ccgcggtgag ttggtcaata
     2761 acgctgacct gtttgaagct atcgaagcag gagttatcaa gaactatatc acggattttg
     2821 ggacagaaga agtgctcaac aaagacaata ttattgtctt cccacacgtt ggtggctcaa
     2881 cagaggaagc agagctcaac tgtgccattg ctgctggtca gaccattcgt cgttttatgg
     2941 agactggtga aatcatcaac tcagttaact tcccaaatgt gaaacaattt ctagatgctc
     3001 cctatcggat tactctcatc aacaaaaaca ttccaaacat ggtggcaaaa atcaccacag
     3061 ccgtgtctga attgggcatc aacattgaca acattatcaa caagtcaaaa ggtgactatg
     3121 cctatacttt acttgatttg gatgaagcgg ataaagtgaa aattgagcag ttggttgcta
     3181 aatttgaagc gaccgatgcg attgtcaagg ttcgtgttat ccaaaataaa aactagtatg
     3241 tatgtgaaaa cgatctatca aagtccactt ggacctatgt ctcttgttgc tagtgatagg
     3301 ggcttgcgag gagcttggtt tgaggaccaa aagtattttg aacgaggact aagagaagaa
     3361 ccagttctag gctcgcaccc tattttagac cagaccagtc tcttgttgga tgcttatttt
     3421 tcaggtcaag atgtggattt tactagcctg cctcttgaag ctattggaac ggaatttcag
     3481 gaaaaagtct gggctttatt gaaagaaatc cctcatggtc agacgactag ctatgggcaa
     3541 cttgcccagc aactgggagt ctgttcaggg caggcagtcg gtggagcagt tgggcgcaat
     3601 ccttattcta ttattgttcc ttgtcaccga gttctcaatc agaaaggaca gttgacaggt
     3661 tatgctggag gactggataa aaaaatctgg ctcttgcaac acgaaaatcc acactttgag
     3721 gtaaaaaaat gattttatat tatgagtatc ccaaatgttc gacctgtcgg gcagcaaaag
     3781 cagagctgaa gagtttgggc ttggaatttg aagctattga cattaagtca acaccgccta
     3841 gtgctgaaga gctaaaagct tggatggaag caacaggtct tgaattgaaa aagtatttca
     3901 atacttcagg aaatagttac cgcgaacttg gtctgaagga taaatttgac agtttgacgg
     3961 tggatcaagc attagactta ttagctaatg atggtatgct gattaagcgt cctctactga
     4021 ttcaggatgg gaaaatctta cagattggct atcgcacaaa atatgaaaat ctcggcttat
     4081 aaggtcggga ttttttattg actataaaag tctaaataaa aggtaatagt taccaatcat
     4141 aaaatgagta taaatataca taatataca
//
LOCUS       DASGAC010000167         4143 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.169, whole genome shotgun sequence.
ACCESSION   DASGAC010000167 DASGAC010000000
VERSION     DASGAC010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4143)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4143)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4143
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.169"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..629)
                     /locus_tag="U1335_001874"
     CDS             complement(<1..629)
                     /locus_tag="U1335_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RuBisCo-expression protein CbbX"
                     /protein_id="HEM5232329.1"
                     /translation="MYFLKEKEDLFIVTGAANTKREIAKKVQSLWEVDVYLDGYSSIT
                     EDDFIDKVGREQLGECGYFLLKQSKENKKGLTPDADMLLENMIGLSDFKNSIQHLINY
                     LDYQSNYLESHTKEPFFLIFNGQKGSGRKYALQYLERLFDLQAVDTHCSEYFLPKTDE
                     KQFPVVYDYFKARARPKLELFANINTKKENNICILIAQSTEEAKKIEIE"
     gene            complement(970..1479)
                     /locus_tag="U1335_001875"
     CDS             complement(970..1479)
                     /locus_tag="U1335_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232330.1"
                     /translation="MLKYIRALPLVIVAGAVVYFTIFICIDNGDWTYVVTRALGLKEE
                     YANNVSLIVIGAQSLFLTSDWFYKRIRAFLNRRLEKAKGLNRQIYLGYKAGIEFLMAL
                     PKRTILFTFYLLLVVAESVGLIEKAKDYAAVIIFIIAVDRVTKIWPEEKRRMIEFSQK
                     IKKRIKSVE"
     gene            complement(2033..3343)
                     /locus_tag="U1335_001876"
     CDS             complement(2033..3343)
                     /locus_tag="U1335_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HEM5232331.1"
                     /translation="MSQKITNDHSSDMLYGIDEQPPKGMAVLLAFQHILAAFAGIIAV
                     PLVVASALGLSVEDTSIMVSASIFVAGIATILQSKGVGPVGSRVSGMMGTDFTFANPA
                     ISVGSQLGIAGIVGATIAGSFVEIALSRFVKTLMRFFPPLITGTVVSLIGITLMPVSM
                     DWAAGGAGASDYASVENISIAFIVLVFTLALNHYGKGMLKTASVFFGMVFGYILCIFL
                     GKVDLSAVGDAAWFALPKIFHYGVKFDLSSILAFIPAYVVSLIGTVGIMMAIGEASNQ
                     KISSERAANGVLADGVGSLIAGVFGAGPNTAFSQNVGLITLTKVASRHVMIIAGIILT
                     LLGVFPKLSALISIMPQPVLGGVGIIMFGLVAAQGIKTLATVKIGDRELLIISIAFAL
                     GIGVTVRPELLSHLPSALQMVFSSGISTGTLAALVLNLVLKEEK"
     gene            3560..4141
                     /locus_tag="U1335_001877"
     CDS             3560..4141
                     /locus_tag="U1335_001877"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002959164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HEM5232332.1"
                     /translation="MKALEARILKDGQVLEENILKVDSFLTHQVDFRLMKEMGQVLAD
                     AYRSKEITKVVTIEASGIVPAVYVAESLDVPMIFAKKHKNITMTEGILTAEVYSFTKQ
                     VTSTVSIASKFLSPEDRVLIVDDFLANGQAAKGLIDIIQQAGAQVIGVGIVIEKSFQD
                     GRQVLIDAGVPVTSLARIEKFQDGQVVFAAADI"
BASE COUNT         1339 a          906 c          725 g         1173 t
ORIGIN      
        1 aattctattt ctattttttt agcctcttcg gtcgattgag caattagaat acaaatatta
       61 ttctccttct ttgtattgat attagcgaaa agttctaatt taggacgagc tcttgcttta
      121 aaatagtcat aaacaactgg aaattgcttt tcatcagtct tgggaagaaa atattcgcta
      181 caatgagtat caactgcttg caagtcgaac aagcgttcta aatattggag agcatatttt
      241 cgtccgctgc ctttttgacc attaaaaatt aagaaaaacg gctctttcgt atgcgattct
      301 aaatagtttg attgatagtc taaatagttt ataagatgct gaatgctatt tttaaagtcg
      361 ctgagtccaa tcatattttc tagcaacata tctgcatccg gagtaagacc tttcttattt
      421 tcctttgatt gcttcaataa gaaataacca cattctccca actgttcacg tccaactttg
      481 tcaataaaat catcctcagt tattgaagaa tagccatcta aatagacatc cacttcccaa
      541 agtgactgaa ccttttttgc tatttctcgt tttgtatttg cagctcccgt tacaataaat
      601 aaatcttctt tttccttcaa aaaatacatc caattatttt cttgtgcgaa agattcactc
      661 ggtcgctcta gttgctgtac atctcccatt agttttatgt gataatagtt catctttacc
      721 cctctattct gatattctca ataagaagta tataaaaata gatggacaaa atatgtccat
      781 cttcgcttat tattaaactt aagtgttatt ccaccatact ttattttcag tgtagcttgg
      841 ctcaagggcg ataacactgc ttagaattcc ttccgtaaga cacagacagc acactgttcc
      901 gttcattctc tcaatagaag aagacctgca ttagattttc aaaaaataaa tatatccaaa
      961 caaatctccc tactccacac tcttaatccg tttcttaatc ttctggctaa actcaatcat
     1021 cctccgcttt tcctccggcc agattttggt cacgcggtca acagcaatta tgaagatgat
     1081 taccgcagca tagtccttgg ctttttcaat cagaccaaca ctttcagcaa ctactaaaag
     1141 tagatagaat gtgaataaaa tagttcgttt gggtaacgcc atcaaaaact caatccctgc
     1201 cttatagccc agataaatct gccgattaag ccctttggcc ttttccaaac gacgattgag
     1261 aaaggcacga atccgcttgt aaaaccaatc cgaagtcaga aaaagtgatt gggcaccaat
     1321 tacaatcaaa gaaacattat tggcatattc ttccttaagc cctagcgctc tagtcacaac
     1381 ataggtccaa tcaccattat caatacagat aaaaatagta aagtaaacaa ccgctcccgc
     1441 tactataaca aggggaaggg cacggatata tttcaacata taataacctc tcttggacaa
     1501 atcttagaac ctatattcat aaacaaagtg ttcttatgca agaaatcgtt tttgctcatc
     1561 aaggcaattt tttgaaggaa tacttgacta gtttcacttt attgcttcga cgagtaaaaa
     1621 gctcctgtgg cagttttcgc ctaccaccta atttgtcagg aatctccttt ccttatctcc
     1681 accttcaaac actccaatgg aagcgatgaa ctgtgaacac aggttcttat atatattgta
     1741 atatgttatg ccaagtacgg tcaagcaggg gctagaattt cagatacgac aactgtacac
     1801 ccttagcatt tttacttacc ccaaaaaggg gagtgggaaa gaactcgacc aagataaaaa
     1861 gagttcgtct tcccaccccc gcacagttga ttaggccaga tttggagtac aaaatacgaa
     1921 caaatctgcc aatcaaccac tgcgctgaga tgttgacacg aactctgagt agtggtcctg
     1981 ggctttttgc ccagccttct cttttcatct aagcaaacca ataaaataac tcttattttt
     2041 cctcttttaa caccagattt aacaccaagg ctgccagggt ccctgttgaa atacctgatg
     2101 agaagaccat ttgaagagct gatggaagat gactcaataa ttctggacga acggtcactc
     2161 caatccccag cgcaaaggca atagagataa tcaagagctc tcggtcacca attttaaccg
     2221 ttgcaagagt cttaatccct tgagcagcaa ccaaaccgaa catgataatc ccaacaccac
     2281 caagaacagg ctgcggcatg atggaaatca aggcagataa ttttggaaag acgccaagta
     2341 gggtaaggat aatacccgca ataatcataa catgacgact agcaactttt gtcaaagtaa
     2401 tgagaccaac gttttgcgag aaggctgtat ttggaccagc accaaaaaca cctgcaatca
     2461 aggaaccaac accatctgcc agaacaccat ttgctgctcg ctcagaagaa atcttttgat
     2521 ttgaagcttc tccaatggcc atcataattc ccaccgtacc aatcaaagat acgacatagg
     2581 ctggaatgaa ggctagaata gaagataggt caaattttac accataatgg aaaattttag
     2641 gaagagcaaa ccaggccgca tctcctacag ctgacaaatc aactttccca agaaaaatac
     2701 acaagatgta accaaaaacc atcccaaaga agacagaggc tgttttcagc attcctttac
     2761 cataatgatt taatgccaga gtaaagacca agacgataaa ggcaatactg atattttcaa
     2821 ctgaagcata gtctgaagcg ccagctccac cagctgccca gtccatactt actggcatca
     2881 gggtaatacc aataagggat acaacagtcc ccgtaatcaa aggcggaaag aagcgcatca
     2941 aagttttgac aaaacgactg agagcaatct ctacaaatga accagcaatg gtcgcaccga
     3001 ctatacctgc aatcccgagc tggctaccaa cactgatagc tggattggca aaggtaaagt
     3061 ccgtccccat cataccagag acccgtgaac ccactggccc aacaccttta gattgcaaaa
     3121 tggtggcaat accagcaaca aaaatagagg ctgataccat aattgaagta tcttcgactg
     3181 acaatcctaa ggcacttgca acgacaagag gcactgcgat gattcctgca aaagctgcta
     3241 aaatatgctg aaaagcaagc aaaacagcca tcccttttgg tggttgttca tcaattccgt
     3301 aaagcatatc cgaagaatga tcatttgtta ttttctgaga catgatttct ccttctttat
     3361 tcctaaataa tggtattagt ctatcagaaa acaaaatcat tttcaataca tttcgtttct
     3421 tcgagcaaag aacgttcgtg ttctttggat aactttgtca atatatacaa tatctcaaca
     3481 caaaaattcg tttattgttt tgattttggc aaaaaaatgc tataatacac aaaagtatca
     3541 tttggaggag aagataaaca tgaaagcttt ggaggcacgc attttaaaag atggtcaggt
     3601 attagaagaa aatatcttaa aagttgactc atttttgacc catcaggttg attttcgctt
     3661 gatgaaagaa atggggcagg tcttggcaga tgcctatcgc tctaaagaaa ttaccaaggt
     3721 tgtcacgatc gaagcctcag gtattgtacc agccgtctat gttgcagaaa gcctagatgt
     3781 gccaatgatt tttgctaaaa agcataaaaa tattactatg accgaaggca ttttgaccgc
     3841 tgaagtctat tcctttacca agcaagttac tagcaccgtt tctattgcta gtaagttttt
     3901 gtcacctgag gaccgtgttc taatcgttga tgattttttg gccaatggac aagctgctaa
     3961 aggcttgatt gacattatcc aacaggccgg agctcaagta attggcgttg gtatcgtcat
     4021 cgagaagtcc ttccaagacg gccgccaagt cctgatagat gcaggcgtac ctgttacttc
     4081 actcgctcgt attgaaaaat ttcaagatgg acaggttgtt tttgcagccg cggatattta
     4141 aaa
//
LOCUS       DASGAC010000168         4092 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.170, whole genome shotgun sequence.
ACCESSION   DASGAC010000168 DASGAC010000000
VERSION     DASGAC010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4092)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4092)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4092
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.170"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..541
                     /gene="hpt"
                     /locus_tag="U1335_001878"
     CDS             <1..541
                     /gene="hpt"
                     /locus_tag="U1335_001878"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HEM5232333.1"
                     /translation="LDKDIKKILVSEEEIVAKCKELGQILATDYADKNPILVGILKGS
                     IPFMAELMKHIDAHVETDYMVVSSYHGGTESSGTVKIIKDLDNSVAGRHIIFVEDIID
                     TGRTLKELKELFALRQAESIKIATLLDKPEGRVVEIEPDYTCFTIPNEFVVGFGLDYD
                     KNYRNLPYVGVLKEEVYTK"
     gene            563..2536
                     /gene="ftsH"
                     /locus_tag="U1335_001879"
     CDS             563..2536
                     /gene="ftsH"
                     /locus_tag="U1335_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEM5232334.1"
                     /translation="MNNQPNKGFIKNPFLIILVIATIVTAFQFFNAGQQVATQEISYS
                     QVITELKNNNVSELTYQPNSSVIEITGKYKTEQEAKDELASSIKLFQVSSKVKYKNFK
                     SLILPSETNLSELQALANENGVKVTIKPESSNGLWLNIVFNLLPLIIAGVFFMMMMNQ
                     GGGGARGAMNFGRNKAKALEQSNIKVRFSDVAGAEEEKQELVEVVEFLKDPKRFTKLG
                     ARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFED
                     AKKAAPAIIFIDEIDAVGRQRGVGMGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAAT
                     NRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAADVDLKLVAQQTPG
                     FVGADLENVLNEAALVAARRNKTVIDASDIDEAEDRVIAGPSKKDRQVSAKEREIVAY
                     HEAGHTIVGLVLSNAREVHKVTIVPRGRAGGYMIALPKEDQMLLSKEDMKEQLAGLMG
                     GRVAEEIIFNTQTTGASNDFEQATQMARAMVAEYGMSEKMGPMQYEGSHAMFAGQTTQ
                     KHISEQTAYELDNEVRDLLNEARNKAAEIIQSNRETHKLIAEALLKYETLDSVQIKSL
                     YETGKMPENIERDDEDVHPLSYEEVKEKINTKE"
     gene            2888..3358
                     /locus_tag="U1335_001880"
     CDS             2888..3358
                     /locus_tag="U1335_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEM5232335.1"
                     /translation="MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLE
                     AQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKRKFDRMPHEDIHELSHAIQSPGL
                     INDELLMLRGALRDYRKNLSNDQLDKYEKLISGQCFNGRREMIRDLQIHLKDFR"
     gene            3890..>4092
                     /locus_tag="U1335_001881"
     rRNA            3890..>4092
                     /locus_tag="U1335_001881"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT         1428 a          694 c          862 g         1108 t
ORIGIN      
        1 gttggacaaa gatattaaga aaattcttgt ttcagaagaa gaaatcgttg caaaatgcaa
       61 agaactcggt caaattctag caacagacta tgcagataag aatcctattc ttgtaggaat
      121 tttaaaaggt tctatcccat ttatggcaga attaatgaaa catattgatg cccatgtaga
      181 aacggattat atggttgttt ctagctacca tggcggaacg gaaagtagcg gtaccgttaa
      241 gattatcaag gatttggaca atagtgttgc aggtcgccac attatctttg ttgaagatat
      301 tattgatact ggtcgtacat taaaagaact aaaagagctg tttgctctcc gtcaagctga
      361 atctatcaaa attgctacac tccttgataa accagaaggt cgagttgttg agattgagcc
      421 agactatact tgtttcacta ttccaaatga atttgtagtt ggatttggat tagactatga
      481 taaaaactac cgtaatcttc cttatgttgg tgtactaaaa gaggaagttt atacaaaata
      541 gaaaaaggtt tcctactata ttatgaacaa tcaaccaaat aaaggattta ttaaaaatcc
      601 ttttctcatt attctcgtta ttgccactat tgttacagcc tttcaatttt ttaacgctgg
      661 tcagcaagta gcaactcaag aaattagcta ttcacaagtt attactgaac taaaaaataa
      721 taatgtttca gaattgacct atcaaccaaa ttcaagtgtt attgaaatta ctggtaagta
      781 caaaacagaa caggaagcta aagatgagtt agcttcatct attaagttat tccaagtttc
      841 tagtaaagtt aagtataaaa actttaaatc actaatttta ccgtcagaaa cgaatttgtc
      901 agagctacaa gctcttgcaa atgaaaatgg agtaaaggtt actattaaac ctgaaagttc
      961 aaatggactt tggttaaata tcgtctttaa tttgttaccg cttatcattg ctggtgtatt
     1021 cttcatgatg atgatgaacc agggtggtgg cggagctcga ggagccatga actttggacg
     1081 aaacaaagca aaagctcttg agcaaagcaa tattaaggtt cgtttctcag atgtcgcagg
     1141 tgcagaagaa gaaaaacaag aactggtaga agtggtagag tttttgaaag atcctaaacg
     1201 ctttaccaag cttggtgccc gtattccagc aggtgtgcta ctagagggtc ctccaggcac
     1261 aggtaaaacc ttgcttgcca aggctgtagc aggtgaagca ggtgtgccat tcttctcaat
     1321 ctctggttca gatttcgtag aaatgttcgt cggtgtcggt gccagccgtg ttcgttcact
     1381 ttttgaagat gctaaaaaag cggcaccagc tatcattttc atcgatgaaa ttgatgctgt
     1441 cggtcgccaa cgtggtgttg gaatgggtgg cggtaacgat gaacgcgaac aaacccttaa
     1501 ccaactcttg attgaaatgg atggttttga agggaacgaa gggattattg tcattgccgc
     1561 aaccaaccgt agtgatgttt tagaccctgc ccttcttcgt ccaggtcgtt ttgaccgtaa
     1621 agtattggtt ggtcgtccgg atgttaaagg acgtgaagca atccttaaag ttcatgcgaa
     1681 gaataaacca ctagcagcag atgtagattt gaaattagta gcacaacaaa caccaggatt
     1741 tgttggtgca gatttagaga acgttctgaa cgaagctgcc cttgtagctg cacgtcgaaa
     1801 caagactgtc attgatgctt cagatattga cgaagcagaa gatcgtgtta ttgcaggtcc
     1861 atctaagaaa gaccgtcaag tttcagccaa agaacgcgaa atcgttgcct accatgaagc
     1921 aggtcataca attgttggtc tcgtactatc aaatgcacgt gaagttcaca aagtaacaat
     1981 tgttccccgc ggtcgcgcag gtggctacat gattgccctt cctaaagaag atcaaatgct
     2041 tctttctaaa gaagatatga aggagcaatt ggctgggctt atgggtggtc gtgttgcgga
     2101 agaaattatt ttcaataccc aaacaaccgg tgcctcaaat gactttgaac aagcaacaca
     2161 gatggcgcgt gctatggttg ctgaatatgg catgagtgaa aaaatgggac caatgcagta
     2221 tgaaggcagt catgcaatgt ttgctggaca aacaactcaa aaacatattt ctgagcaaac
     2281 tgcatatgag ttagataatg aagtacgtga tttgttaaat gaagctcgca acaaagcggc
     2341 tgaaattatt cagtctaatc gcgaaactca taaactaatc gcagaagcat tgctcaaata
     2401 cgaaacccta gacagtgttc agattaaatc tctctatgaa acaggcaaaa tgccagagaa
     2461 tattgaacgt gatgatgaag atgttcatcc cctttcttat gaagaggtaa aagagaaaat
     2521 taatacgaaa gagtagtata aaaatactct gggcaagaca ttccataacg gatctgcctt
     2581 cactctcaac cactaaaata accacaaagc cttcgctaag tacataatct tggcgagggc
     2641 ttttttacat gatatacatc agaaacaggg catttacaag aaaaacgaat caatagttat
     2701 ttatctcaat cttagaacta taccaaataa ctcccttctg aagcagaatg caatgtttac
     2761 catagagtat caatagcaaa tgtactttaa aaaagaaaaa tcaaataaag tatgctagac
     2821 aaaaatgtcc tgtagaaaga cagcactttt cgataaactt aaaccatcaa caaaaggaga
     2881 ttaagaaatg gaattcgaaa aagtgtacgc aagcgtcaaa ggtattgtaa acaaggctcg
     2941 aaaagagttt tacattaaac tatgggatcg agatgattgg gaacaagaag gaatgatgac
     3001 cttgtttgaa ttgttggaag ctcaaccgtg gctagttgat gaacaagttc aattatattg
     3061 ttattttaaa gtcaagttca gaaatcgcat caaagatcgt atccgcaaac aggaaagtca
     3121 aaaacgcaag tttgaccgaa tgccacatga agatattcac gaattatctc atgcaataca
     3181 atcaccggga ttgataaacg atgaactatt aatgttgaga ggtgccttga gagattatcg
     3241 aaaaaatctg agcaatgatc aacttgataa atacgaaaaa ttaattagcg gacaatgttt
     3301 taatggtcgt cgtgaaatga tacgtgattt acaaattcat ttgaaagact ttcgctaaag
     3361 ctaattacta acatcatgtt aatcgaatta agaaattggg cagaagcacc ataaaaagtt
     3421 ctgttcagtt tctttttata taggttatag cacaggaaga aggaatagga gaaaaaacaa
     3481 agtatctaca tagaactttc agtgtaaaaa atcccaaaaa cccggttgac aaagtatata
     3541 agtcgtgata gaataaatga gttgtctctt gaggggctag ttaacagaga aacgaaaaaa
     3601 agttttgaaa aagtgttgac aagcccatca gaagatgata gaatgattga gttgtctctt
     3661 gagggaacta gttaacagag aaacgaaaaa aagtttcgaa aaagtgttga caaagttcac
     3721 aagaaatgat aaactaagat agttgtcgcg agagcgcgat aacgacaaga cctttgaaaa
     3781 ttaaagaaga cgaaccaaac gtgcagggtg atttatctaa agataaatcg tcaatgacaa
     3841 aaaacaataa aacggaaagc tagtgatagc ttgagtttga atcaaaactt tttatgagag
     3901 tttgatcctg gctcaggacg aacgctggcg gcgtgcctaa tacatgcaag tagaacgctg
     3961 aagtctggtg cttgcactag acggatgagt tgcgaacggg tgagtaacgc gtaggtaacc
     4021 tgcctcatag cgggggataa ctattggaaa cgatagctaa taccgcataa cagtattaac
     4081 cgcatggtag at
//
LOCUS       DASGAC010000169         4049 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.171, whole genome shotgun sequence.
ACCESSION   DASGAC010000169 DASGAC010000000
VERSION     DASGAC010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4049
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.171"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            157..2151
                     /gene="treP"
                     /locus_tag="U1335_001882"
     CDS             157..2151
                     /gene="treP"
                     /locus_tag="U1335_001882"
                     /EC_number="2.7.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system trehalose-specific EIIBC component"
                     /protein_id="HEM5232336.1"
                     /translation="MGKFEKEAKQLLEAIGGKENVNAVTHCATRMRFVLADEKKANVK
                     VIEDIPAVKGTFTNAGQFQVIIGNDVPIFYNDFTAVSGIEGVSKEAAKSAAKSNQNAI
                     QRVMTMLAEIFTPIIPALIVGGLILGFRNVLEGVQMEWLGQAMKDGQLVFDADGNPVW
                     NTIVQVSPFWNGVNHFLWLPGEAIFHFLPVGITWSVSRKMGTSQILGIVLGICLVSPQ
                     LLNAYAVPGTDAATIASDWSWNFGAFSIARIGYQAQVIPALLAGLALSYLEIFWRKVV
                     PEVVSMIFVPFLSLLPAIILAHTVLGPIGWTIGQWLSTVVLAGLTGPLKWLFGAVFGA
                     LYAPFVITGLHHMTNAIDTQLIADAGGTGLWPMIALSNIAQGSAVFAYFLMNRHNEKE
                     AQVSLPATISAYLGVTEPALFGVNVKYVYPFVAAMIGSSIAGLLSVTFNIQAASIGIG
                     GLPGILSIKAEYWGAFFMTMIVAIVVPMILTAVFKRTGAFSKKEETVEEVVAPTEAVV
                     ETGAAIELISPLTGQTKELSQATDPVFASGVMGQGVLIDPSEGSLVAPVDGEVSVLFP
                     TNHAVGITAANGVELLMHIGMDTVGLEGKGFTAHVKQGDKVKAGDKLISFDIDVIKAA
                     GLVAETPVIVTNQTDFDTQVIGNLPRAISQGEAILTVTKN"
     gene            2232..3857
                     /gene="treC"
                     /locus_tag="U1335_001883"
     CDS             2232..3857
                     /gene="treC"
                     /locus_tag="U1335_001883"
                     /EC_number="3.2.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-phosphotrehalase"
                     /protein_id="HEM5232337.1"
                     /translation="MTIDRRKVVYQIYPKSYKDTTGNGIGDLRGIIEKLPYLKELGID
                     MIWLNPFYPSPQRDNGYDISDYTAVNPDFGTMADFEEMVAVGKELGIEFMLDMVLNHC
                     STDHEWFQKALAGDKYYQDFFILRDQPTDWVSKFGGNAWAPFGDTGKYYLHLFDVTQA
                     DLNWRNPHVREELFKVVNFWKDKGVKGFRFDVINLIGKDEVLEDCPINDGKPAYTDRP
                     ITHDYLKMMNNATFGAEKGFMTVGEMSATTIENCILYTAPEREELSMAFNFHHLKVDY
                     KDGQKWTIMDFDFEELKRLFHTWGEEMSVGNGWNALFYNNHDQPRALNRFVDVENFRN
                     EGATMLAASIHLSRGTPYIYMGEEIGMIDPDYDSMDDYVDVESINAYQMLLDQGHTPE
                     QAFKIIQAKSRDNSRTPMQWDASDNAGFSTGTPWLKAGKSYPTINVEQEKTGPIFTFY
                     QELIRLRKELPLISEGDYKAAYKDSQKVYAFERLLNDEKLLVFNNFFAEEVELDLADD
                     YAHGQVLISNYPDSKLGKKIILKPYQAMAILVK"
BASE COUNT         1133 a          942 c          883 g         1091 t
ORIGIN      
        1 aactaagcaa aaacgcttgc attatttttt gaaatcggat acaatgataa cacaaaagaa
       61 atttgtccgt acaaatttca aaaaaggaca tacttagaga gatgtctaaa aaatataggg
      121 tgacggattc cataagccgt ctagaaggaa aaatatatgg gaaaatttga aaaagaagcc
      181 aaacagctcc tagaagctat tggcggaaaa gagaatgtca atgcagtaac acactgtgca
      241 acgcgcatgc gctttgttct tgcagatgag aaaaaagcaa acgtaaaagt catcgaagac
      301 attccagcag taaagggaac ctttaccaac gctggtcagt tccaagtcat cattggtaac
      361 gatgtaccaa tcttctacaa tgacttcaca gccgtgtctg gtatcgaagg cgtatctaag
      421 gaagctgcca agtcagcagc taaaagcaac caaaatgcta tccaacgtgt tatgactatg
      481 ttggctgaaa tcttcacacc aatcattcct gcccttatcg tcggcggttt gattctcggt
      541 ttccgtaacg tcttggaagg tgttcagatg gaatggcttg gacaagctat gaaagatggg
      601 cagttggtct tcgatgctga tggtaaccct gtatggaaca ccattgttca ggtttctcct
      661 ttctggaatg gtgtcaatca cttcctctgg ttgccaggtg aagccatctt ccacttccta
      721 ccagtaggta tcacttggtc cgtatctcgt aaaatgggaa cttcacaaat ccttggtatc
      781 gtccttggta tctgtttggt ttctccacag ttgctcaacg cttatgctgt acctggtaca
      841 gatgcagcaa ctattgccag cgactggtct tggaacttcg gtgcatttag tattgcccgt
      901 atcggttatc aagcacaagt tatccctgcc ctccttgctg gtttggcact gtcttaccta
      961 gaaatcttct ggcgtaaggt tgttccagaa gtggtatcta tgattttcgt accattccta
     1021 tcacttcttc ctgcaattat cttggctcac actgtccttg gtcctatcgg ttggacaatc
     1081 gggcaatggt tgtcaacagt tgtattggca ggtttgactg gtccattgaa atggctcttc
     1141 ggtgcggtat tcggtgccct ctatgcgcca ttcgttatca ctggtcttca ccacatgaca
     1201 aatgccatcg atacacaatt gattgcggat gctggtggaa ctggtctctg gccaatgatt
     1261 gccctttcta acattgctca aggttctgcg gtatttgctt acttcctcat gaaccgtcac
     1321 aatgaaaaag aagctcaagt ttctcttcct gcaacaattt ctgcttacct tggtgttaca
     1381 gaaccagccc tcttcggtgt taacgtgaaa tacgtttacc cattcgtagc ggctatgatt
     1441 ggttcaagta ttgctggact tctctctgta accttcaaca tccaagctgc ctctatcggt
     1501 atcggtggtc ttccaggtat cttgtctatc aaggctgaat actggggtgc attctttatg
     1561 acaatgattg ttgcgattgt tgtcccaatg attttgacag ctgttttcaa acgtacaggt
     1621 gcattttcaa aaaaagaaga aactgttgaa gaagttgtag ctccaactga agcagttgtt
     1681 gaaactggtg ctgctatcga attgattagc ccacttactg gtcaaaccaa agaattgtca
     1741 caagctactg accctgtatt tgcatcaggt gtcatgggcc aaggtgtcct tattgacccg
     1801 agcgaaggta gcttggttgc tccagttgat ggtgaggtat ccgtcctctt cccaactaac
     1861 catgctgttg gtatcactgc tgcaaacgga gttgagctcc ttatgcacat tggtatggat
     1921 actgttggat tggaaggcaa aggcttcaca gctcacgtca aacaaggtga caaggtaaaa
     1981 gctggtgata aattgattag ctttgacatc gatgtcatta aggctgctgg tcttgttgct
     2041 gaaacaccag ttatcgtgac caaccaaact gactttgaca ctcaagttat cggaaatctt
     2101 cctcgtgcca tctcacaagg cgaagctatt ctgacagtta caaagaatta atgttctagg
     2161 agggcgcaag gtaacttgca cctcctatca ttgcttatgc aagaaggaaa aatcaagaaa
     2221 gagagagcaa aatgacaata gacagacgaa aggttgttta tcaaatctac ccaaaatctt
     2281 acaaggatac aactgggaat ggtatagggg atttacgagg aattattgaa aaactacctt
     2341 atttgaagga gctaggcatt gatatgattt ggctcaaccc tttctaccca agtcctcagc
     2401 gagacaacgg ctatgatatt tctgattata cagctgtcaa tcctgatttt ggcaccatgg
     2461 ctgactttga agaaatggtg gctgtcggca aagaattggg catcgaattc atgctagaca
     2521 tggtcctcaa ccactgctcg acagaccacg aatggttcca aaaagcccta gcaggcgaca
     2581 aatattacca ggatttcttt atcctgcgtg accaaccaac tgactgggtg tctaaatttg
     2641 gtggcaatgc ctgggctcct tttggagata ctgggaaata ctacctccac ctctttgacg
     2701 tgacccaagc cgacctcaac tggcgaaatc ctcatgtccg tgaagaactg ttcaaggtgg
     2761 tcaacttctg gaaagacaag ggtgtcaaag gcttccgctt cgacgttatc aacctgattg
     2821 gtaaggacga agtcctcgaa gactgcccaa tcaatgacgg taagcctgct tacaccgacc
     2881 gcccgatcac ccacgactac ctcaagatga tgaacaatgc cacctttgga gcagaaaaag
     2941 gcttcatgac cgtcggggaa atgtctgcca ccaccattga aaactgcatt ctctacacag
     3001 ctcctgagcg ggaagaattg tccatggcct tcaacttcca ccacttgaaa gtggattaca
     3061 aggacgggca aaaatggacc attatggact ttgactttga agaactcaaa cgcctcttcc
     3121 acacttgggg cgaagaaatg tccgtcggaa atggctggaa cgcccttttc tacaacaacc
     3181 acgaccaacc tcgtgccctc aaccgctttg tcgatgtgga aaatttccgc aatgaaggag
     3241 caaccatgct ggcagcctct atccacctgt cacgcggtac tccttacatc tacatgggcg
     3301 aggaaatcgg catgattgac cccgattacg acagcatgga tgactacgtg gatgtagagt
     3361 ctatcaatgc ctaccagatg ctcttggatc aaggtcacac acctgagcag gccttcaaga
     3421 ttatccaggc caagtcccgt gacaattccc gcaccccgat gcaatgggat gcatctgaca
     3481 atgcaggctt ctcaacagga actccttggc tgaaagctgg caaatcctat ccaaccatta
     3541 acgttgaaca ggaaaaaaca ggcccaatct tcaccttcta ccaagaactc atccgcctgc
     3601 ggaaagaact gcccctcatc tcagaagggg attacaaggc cgcctacaag gacagccaga
     3661 aagtctatgc ctttgaacgc ttgctaaatg acgaaaaact actggtcttc aacaatttct
     3721 tcgcagaaga ggttgaacta gacctggcag acgattacgc ccacggccaa gtcctcatca
     3781 gcaactatcc tgacagcaaa ctcggtaaga aaatcattct caaaccttac caagcaatgg
     3841 cgattttggt taaataaacg ataaaacatc cgaaaacaac actctacgtg tcaattttaa
     3901 ttttcctaaa attagaacct gccttcacag ctcagtaggt tacttgtgaa ggcaagttct
     3961 tggtttaagg tttcttttag gaatatattt tatactgtag tttgcgcacg aaacagctat
     4021 ctgggagggg gagatagttg tttcttttt
//
LOCUS       DASGAC010000170         4024 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.172, whole genome shotgun sequence.
ACCESSION   DASGAC010000170 DASGAC010000000
VERSION     DASGAC010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4024)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4024)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4024
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.172"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            287..540
                     /locus_tag="U1335_001884"
                     /pseudo
     CDS             287..540
                     /locus_tag="U1335_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028405.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            550..801
                     /locus_tag="U1335_001885"
     CDS             550..801
                     /locus_tag="U1335_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232338.1"
                     /translation="MFKEFNKEYYRSLNFYLMIMLLLGSVGEWLNKGPSLWLGLLLFA
                     FVGTARSAFWSKEWMLRANWQIYLCIAFLLVGVWVEFFV"
     gene            880..1629
                     /locus_tag="U1335_001886"
     CDS             880..1629
                     /locus_tag="U1335_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003017755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HEM5232339.1"
                     /translation="MQKIDLLDGERIDQLFSTDVQIIQNREVFSYSIDSVLLSRFPKM
                     PAQKGLIVDLCSGNGAVGLFASTRTKAQIIQVELQERLADMNRRSIALNGLEEQVSII
                     NDDLANLPQYDLRSKVDLMLCNPPYFKVDEGSNLNESEHYLLARHEIATNLDSICQVA
                     QQVLKSNGRLAMVHRPDRFLDILDTLRTYKLAPKRIQFVYPKASKEANMLLIEAIKDG
                     SVDGLHILPPLVVHEENGDYTPAIREIYYGK"
     gene            1619..1891
                     /locus_tag="U1335_001887"
     CDS             1619..1891
                     /locus_tag="U1335_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEM5232340.1"
                     /translation="MENKAYLYVLECADGSLYTGYTTDVEKRLATHNRGKGAKYTRGR
                     LPVSLLYQEAFASKQEAMSAEALFKKRSRQSKLDYIAEMTKKTRST"
     gene            complement(1906..2517)
                     /locus_tag="U1335_001888"
     CDS             complement(1906..2517)
                     /locus_tag="U1335_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM5232341.1"
                     /translation="MATVLIVKAHPLDAQKSYALRALEEFQTRYASLHPEDKIEVVDV
                     FEDQIPALDKPLLESMGAVKKGIEISPEQAEQLDRYNALTQQFLVADKIVVVNPLWNL
                     NVPSQLVSWINTINVAGLTFKYGPEGSIGLVKGKKLLHIQSNGGVYAGQDPAAQYIKS
                     IFEFLGFEDIHQVFIEGQSADPSRAEAIYAEAMTKIDTILETF"
     gene            complement(2640..3047)
                     /locus_tag="U1335_001889"
     CDS             complement(2640..3047)
                     /locus_tag="U1335_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5232342.1"
                     /translation="MITYKHNPQLDFQAVLDLYDSVDWTGYTSRPEMLEKALEHSLLV
                     LAAFDGDRLVGLLRAVGDGYSIVFIQDILVLPTYQRQGIGRHLLEQAITHFPDIYQLH
                     LLTDNTEKTRSFYEAIGFTAVDSLDCVAYTYLK"
     gene            complement(3159..3758)
                     /locus_tag="U1335_001890"
     CDS             complement(3159..3758)
                     /locus_tag="U1335_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1648 domain-containing protein"
                     /protein_id="HEM5232343.1"
                     /translation="MKKIDIKTLLATSSIFLLIAVLTLCYYKALPDTMVTHFSVNGEP
                     NGSMAKYMMILTLLSFFCAHLFICVLYDVKGIGKTPVIRVVKWFFPLLVLIIQVALLR
                     SNLGGELDYRRLVIGLLAVYYMVIGNYLPKEELDSKTNEIERKGRKQSGYLLMIGGLL
                     QLVSLLGSPTLSILVMILVGISVVSLSIYYAYLHFKTAS"
     gene            complement(3745..4023)
                     /locus_tag="U1335_001891"
     CDS             complement(3745..4023)
                     /locus_tag="U1335_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM5232344.1"
                     /translation="MGLSETLKAISAPIRRQILDSLKSGPKSAGEIVEQFQLTGATVS
                     HHLSTLKKAGLILEEKQKNFIYYRLNYTVFEEVLVWIASFGGQQDEEN"
BASE COUNT         1135 a          854 c          823 g         1212 t
ORIGIN      
        1 gtgaatatga aattccagtt taacaagcat ttctatcggt atagtgcctt ctattctctg
       61 gttttttgga cttgtttttt tctatcagac atattgctag actcttccca aacgcctgca
      121 tggtatagcc tattagcctg tctgattatt ttaatccatg ccattcgaac ctttttcttc
      181 aaggaagaaa aggaactcac tcgcatgggc tacatcttct atataggatc aatcgtggtg
      241 attatttatc tgaaattcat tttgggtaaa tagaaaggag cttactatgt ctaaaaaatt
      301 caataaagca ttctatcgga cctgggaatt ttacttgtct cttgcctgta tcctacaagt
      361 gatttatgct gctgtagatg gaccattttg gtttatccat tttctcaagc ttggagtcgg
      421 actttatgct ggttatctag ctttctttaa gtcacgtagc tggattaaaa aacatggcaa
      481 atttatctga cgattggatt gattgctagt tggataatca tttccttctt tgtactgtga
      541 ggattttata tgtttaagga atttaataaa gaatattatc ggagtttgaa tttttatctg
      601 atgatcatgt tgttgctggg gagtgtaggc gaatggctaa ataagggacc tagcctctgg
      661 cttgggctct tgctttttgc tttcgtcggt acagcccgca gtgccttttg gtctaaagaa
      721 tggatgttga gggcaaattg gcaaatctat ctctgtatcg ccttcttgct tgttggggtt
      781 tgggtagaat tttttgttta agaattgaga gcggggtatt cgctctcttt tcattcaaaa
      841 taaacagtga ttttcattca aagatggtat aataaaccta tgcaaaaaat tgatttacta
      901 gacggggagc ggattgacca gctcttctcg acagatgttc agattattca aaatcgagag
      961 gtatttagct actcgattga cagcgttctt ctttcgcggt ttccaaaaat gccagctcag
     1021 aaggggttaa ttgtcgatct atgtagcgga aatggggcgg tgggcctctt cgcctccaca
     1081 cgcaccaagg cccagattat tcaggttgaa ttacaggaac ggctggctga tatgaaccgc
     1141 cgctccattg ccctcaatgg tttggaggaa caggtttcga ttatcaatga cgacttggct
     1201 aatctgcccc agtacgatct gcggtccaag gttgatttga tgctctgcaa tcctccctat
     1261 ttcaaggtgg acgagggttc aaacctcaat gaaagcgagc attatcttct agccagacat
     1321 gagattgcga ccaacctaga cagcatttgt caggtggccc aacaggtact caagtccaat
     1381 ggtcgcttgg ccatggttca caggcccgat cgatttttag atattttgga cacactaaga
     1441 acctacaaat tggctcccaa acgcatccag tttgtctatc caaaggccag caaggaggcc
     1501 aatatgttgc tgattgaggc tatcaaggac ggctcggtgg acgggctgca catcctgcca
     1561 cctctggttg tccatgagga aaatggcgac tatactccgg ctattcgcga gatttattat
     1621 ggaaaataag gcctacttgt atgttttgga atgtgccgac gggagtcttt atactggtta
     1681 tacgacggat gtggagaagc ggcttgctac ccataatcgt gggaaagggg ccaagtacac
     1741 ccgcggacgc ctgcctgtca gtctgctcta tcaagaagcc tttgctagta agcaggaagc
     1801 catgtctgcc gaggctctct ttaagaaacg cagtcggcag agtaaattag attatattgc
     1861 agaaatgaca aaaaaaactc gctccacata gggcgaggtt ttgacttaaa atgtctccaa
     1921 aatcgtatca atcttggtca ttgcctcagc atagatagct tcagcccggc ttggatcggc
     1981 cgattgtcct tcgataaaga cctgatggat gtcttcaaag cccagaaact caaagataga
     2041 cttgatgtat tgggctgcag gatcttgacc tgcataaacg ccaccattgg actggatgtg
     2101 caacaatttt ttgcccttga ccagaccgat agagccctca ggtccatact tgaatgtcag
     2161 tcctgcaacg ttaatggtat taatccatga cactaattga cttggcacat tgaggttcca
     2221 aagaggattg acgacgacaa tcttatctgc taccagaaat tgctgggtca aggcattata
     2281 gcggtccaac tgctccgctt gttcaggact gatttctata ccttttttaa ccgctcccat
     2341 agattctaac aaaggcttat ccaaagctgg aatctggtct tcaaagacat ccactacttc
     2401 tatcttatcc tctgggtgca aactggcgta acgagtttga aactcttcca aggctcgcaa
     2461 ggcgtaggac ttttgtgcgt caagtgggtg ggcctttaca attaatacag ttgccattgt
     2521 tcatctcctt tattactaat tattgataaa tatattctac tctttttgat ttgaaattca
     2581 aatcagttgc tcgaagcaaa aggctggtct cccagcctct gcttttttag attgttttat
     2641 tattttaaat aggtgtaagc gacacagtcc aggctatcaa cggctgtaaa gccaattgcc
     2701 tcatagaaag accgtgtttt ctcagtattg tccgtcaaga gatgaagctg atagatatct
     2761 ggaaagtgtg taatggcttg ctccaaaaga tgacgcccaa tcccttgtcg ctgataggtt
     2821 ggtaggacca agatgtcctg aataaaaacg attgaatagc cgtcaccaac tgctcgcaag
     2881 agacccacta gacggtcacc gtcaaaggca gcaagaacga gcagactatg ttccaaggcc
     2941 ttctctagca tttctggacg gctagtatat cctgtccagt ccacagaatc atagaggtca
     3001 aggacagctt gaaaatccag ttgaggatta tgtttgtaag taatcatgtc tttctccttt
     3061 gtattgtttt ttagaataca aaggctttat ccattgtcaa aatgcccatg gtcttacctc
     3121 ctgttttgct acttctagta taacaaaaaa cgctccaatt atgaagcggt tttaaaatgc
     3181 agataagcat aatagatact aagacttaca acagaaatac caaccaatat cattacaagg
     3241 atagatagag ttggtgaacc caacaaactt actaactgca acaacccacc aatcatcaag
     3301 agatagcctg actgctttct tccctttcgt tctatttcgt tggtcttgct atccaattcc
     3361 tccttgggta aataatttcc tatcaccata taatagacag ccagcagtcc aatgacaagc
     3421 ctccgataat ccagttctcc tcccaagtta gacctaagca aagcaacttg aatgattaga
     3481 accagcaacg gaaaaaacca tttgaccact cgaatgactg gtgttttccc tatccctttc
     3541 acatcataaa gtacacaaat gaataggtga gcacaaaaga atgatagcag tgtcaaaatc
     3601 atcatatact tagccataga gccatttggc tcaccattta cgctaaaatg tgtcaccatg
     3661 gtatctggca atgctttata gtaacaaagc gtcaatacag ctattaatag gaatatacta
     3721 gaagttgcta ataaggtttt tatatcaatt ttcttcatct tgttgccctc caaaacttgc
     3781 aatccaaacc aagacttctt caaagaccgt atagtttaga cgataataaa taaaattttt
     3841 ctgcttttcc tccaaaatta atccagcttt tttcaaagtg gataaatgat gagaaactgt
     3901 tgctcctgtt aattgaaatt gttctacaat ttccccagca gacttcggcc ccgacttaag
     3961 actatctaga atttgcctac gaataggagc agaaattgcc ttcaaagttt cagacaatcc
     4021 cata
//
LOCUS       DASGAC010000171         3877 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.173, whole genome shotgun sequence.
ACCESSION   DASGAC010000171 DASGAC010000000
VERSION     DASGAC010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3877)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3877)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3877
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.173"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            17..1459
                     /locus_tag="U1335_001892"
     CDS             17..1459
                     /locus_tag="U1335_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEM5232345.1"
                     /translation="MSKNKHMLLGIGLTVVLTAVGYITLLEPMISYFKINQSAVNIDI
                     QTSKTKSTLPIPPLLEDKNPDPNIADFTLEPQERETSFLPNTKTRTMGYNGSFLGPVI
                     RVSKGEQVNVHVNNKLKEATTVHWHGLEVEGEKDGGPHQGIEPGTTWEPSFTVNQQAA
                     TLWYHPHFGGNTATQVYKGLAGLFYVDDEVSKSLNIPKEYGVNDIPLVIQDRSFGKDG
                     SFIYNTNMMDGATGDTIIVNGAIKPNLEVNRVKMRFRIVNGANASNFNLKLDNRDGFY
                     QIASDGGFLEKPVSQRNIMLSPGERAEIIVDFSKYEKGTQLSLMSNKEAIMTFNVKGD
                     GKDDTEVPSTLTNIERMSEAQATKIRSFELQGMGQMVSINGIKFDMNRIDETVKLGDT
                     EIWEITNPGSMMHEMGHPFHIHGTQVQILSRNGNAPSPEESGWKDTVYIEPNEKVRLI
                     VKFNKKGTYMYHCHILEHEEAGMMGQIKVE"
     gene            1468..1605
                     /locus_tag="U1335_001893"
                     /pseudo
     CDS             1468..1605
                     /locus_tag="U1335_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006703336.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CopY/TcrY family copper transport repressor"
     gene            1625..3763
                     /gene="cadA"
                     /locus_tag="U1335_001894"
     CDS             1625..3763
                     /gene="cadA"
                     /locus_tag="U1335_001894"
                     /EC_number="7.2.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004336256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cadmium-translocating P-type ATPase"
                     /protein_id="HEM5232346.1"
                     /translation="MNNNNKHLSHCHHNHGDMDHSKHEHVSTEEHGDHKNQHQEHHAE
                     HDHSGHSGHSGHDHSGHHGGHEHHHHGNFKELFLKSLPLGIIIMLLSPMAGFDLPFQF
                     TFPYSDIVVAILSTILIIYGGRPFYQGAVDEFKQKEPGMMALVSLGISVSYLYSIYAV
                     IITYVTGGHVMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQAALAKLVPKDAHVVLE
                     DDSIEIRPVADLQVGDLIRVQAGENVPADGTIERGESRVNEALLTGESKAVKKGPGDE
                     VIGGSTNGEGVLYIKVNETGDQSFISQVQNLISQAQSQPSRAENIAQKVAGWLFYIAV
                     IVALIAFVVWMVIGDIPTAVIFTITTLVIACPHALGLAIPLVTARSTSLGASRGLLVK
                     DRQALEIAQDADVIILDKTGTLTTGEFKVLDVKLLNDKYTKEEIIALLAGIEGGSSHP
                     IAQSIIRFAEQQDIRPASFDSIDVISGSGVEGKAGGHRYQLISQKAYGRNLDMDIPKG
                     ATLSVLVENDDAIGAVALGDELKPTSKELIKALKKNNIQPIMATGDNEKAAQGAAEVL
                     GIEYRSNQSPQDKYELVKTLKDEGKKVIMVGDGVNDAPSLALADVGIAVGAGTQVALD
                     SADVILTQSDPGDIESFIELAHKTTRKMKQNLFWGAGYNFIAIPLAAGILAPIGITLS
                     PALGGILMSVSTVIVAINAMLLSLDPKNNG"
BASE COUNT         1349 a          616 c          837 g         1075 t
ORIGIN      
        1 ataaggagga ataaaaatga gtaagaataa acatatgtta ttaggtattg gacttacagt
       61 cgtattaact gcagttggat atattacact tttagaacca atgattagtt attttaaaat
      121 aaaccagagt gcagttaata tagatattca aacaagtaaa acaaaaagta cacttcctat
      181 accaccacta ttagaggata aaaatccaga tcctaatatt gcggatttta ctttagaacc
      241 tcaagaaaga gaaacttcat ttttaccaaa taccaagaca cgaactatgg ggtacaacgg
      301 aagtttctta ggccctgtca tcagagtaag taaaggtgag caagtaaatg tgcacgtaaa
      361 taacaagcta aaagaagcaa ctacagttca ctggcatgga ctagaggtag aaggagaaaa
      421 ggatgggggc cctcatcaag gaattgaacc aggaacaact tgggagccta gttttacagt
      481 aaatcaacag gctgcaacat tgtggtatca tccgcacttt ggaggaaata ctgctaccca
      541 agtttataaa ggtttagcag gactattcta tgtggatgat gaagtatcaa aaagcttaaa
      601 tattcctaag gaatatggag taaatgatat acctttagta attcaagata gaagctttgg
      661 caaggacggc agttttattt ataatacaaa tatgatggat ggagcaacag gggatactat
      721 catagttaac ggagctatta aacctaattt agaggttaat agagtcaaga tgagatttag
      781 aatagttaat ggtgctaatg caagtaactt taatttgaag ttagataata gagatggatt
      841 ctatcaaata gcatctgatg gtggattttt agaaaaaccg gttagccaga gaaatattat
      901 gttatcacct ggggaaagag cagagataat agtggacttt tcaaagtatg aaaagggaac
      961 gcagctatca cttatgagta ataaggaagc cattatgacc tttaatgtta aaggcgatgg
     1021 gaaagatgat actgaagtac ctagcacttt aacgaatata gaaagaatgt cagaagcaca
     1081 agctactaag ataagaagct ttgagcttca aggtatgggt caaatggtat caataaacgg
     1141 tataaagttt gatatgaata gaattgatga aacagtgaag cttggagata cagagatttg
     1201 ggaaattaca aacccaggat ctatgatgca tgaaatgggg cacccattcc atattcatgg
     1261 cacacaggtt caaattctat caagaaacgg taatgcgcct tctccagagg agagcggatg
     1321 gaaagatact gtatatattg agcctaacga aaaagtaaga cttatagtta agtttaataa
     1381 gaagggtact tatatgtacc actgtcacat tcttgaacat gaagaagcag gtatgatggg
     1441 acaaattaaa gtagaataat aaataatatt gaagatcatg tcttaagctt cgatgatata
     1501 gatcgactag aaaaaatatt agagataaaa aaatctttcg cagtagaaga agtggattgc
     1561 aattgtccag aaagacaatg cgagtgtcat ttacatcatc attaagaata aggaggaatt
     1621 taaaatgaac aataacaaca aacatttatc ccactgtcac cataatcatg gcgacatgga
     1681 tcattcaaaa catgagcacg taagcacgga agaacatgga gaccataaga atcaacatca
     1741 agaacatcat gctgagcatg atcacagcgg gcacagcggg cacagtgggc atgaccacag
     1801 tgggcatcac ggagggcatg aacaccatca tcacggtaac tttaaggaac ttttcttaaa
     1861 atcattgcca ctaggaatca ttattatgct cttatcccct atggctgggt ttgacctacc
     1921 attccagttt acttttccat attctgatat tgtagtagct attttatcta ctatattaat
     1981 tatttatggt ggacgtccat tctatcaagg cgcagttgac gaatttaaac aaaaagaacc
     2041 tggaatgatg gctctagttt ctttaggtat aagtgtttca tatttataca gtatttatgc
     2101 tgttatcatt acctacgtaa cgggtggaca cgtgatggac tttttctttg aatttgcttc
     2161 attattatta atcatgttat taggtcactg gattgagatg aaagctattg gagaagcagg
     2221 agacgcacaa gcagcattgg ctaagttggt accaaaagat gctcacgttg tgttagaaga
     2281 tgattcaatt gaaatacgtc cagttgctga cttacaggta ggagatttaa ttcgtgttca
     2341 agccggagaa aatgtgccag cagacggaac tatcgagcgt ggcgaatcac gtgtgaatga
     2401 agctcttttg actggagaat caaaagcagt taaaaaaggt cctggcgatg aagtaatcgg
     2461 aggctcaaca aatggagaag gggttcttta tattaaagtg aatgagacag gtgatcaatc
     2521 cttcatctct caagttcaga atttaatcag ccaagctcaa agtcagcctt ccagggcaga
     2581 aaatattgct caaaaggttg cagggtggct cttctatatt gcggtcattg tcgcactaat
     2641 agcttttgta gtgtggatgg ttattggaga tatcccaacg gcagttatat ttactattac
     2701 tacattagtt attgcttgtc cgcacgcatt gggtctggct attccattgg taaccgcccg
     2761 aagcacaagc ttaggggcta gccgtggctt actagtaaaa gaccgccaag ccttagaaat
     2821 agctcaagat gcagatgtga taattttaga taaaacgggt actttaacaa ctggtgaatt
     2881 taaagtatta gatgtaaaac ttcttaatga caaatataca aaagaggaaa tcattgcctt
     2941 attggcaggt attgaaggag gatctagcca cccaattgct caatcaatta taaggttcgc
     3001 cgagcagcaa gatatacgtc cagcatcttt tgattcgatt gatgtgattt ccggttctgg
     3061 agtagagggt aaagcaggtg ggcaccgtta ccaattaatc agtcaaaaag cctatggacg
     3121 taatcttgat atggatattc caaaaggagc aactcttagt gtcttagtag aaaacgatga
     3181 tgccattggt gctgtagctt taggggacga attaaaacca acgagtaaag agttaattaa
     3241 agctcttaaa aagaacaata ttcaaccaat tatggcaaca ggtgataatg aaaaagcggc
     3301 tcaaggcgcg gcagaagttt tagggattga gtatagatca aatcaatctc cacaagacaa
     3361 atatgagtta gttaaaacac ttaaagatga aggaaagaaa gttatcatgg taggtgatgg
     3421 tgtaaatgat gctccttctc ttgccttagc agatgttggt atagctgtag gtgctggaac
     3481 tcaagttgca ttggattcag ctgatgtcat attgactcaa tccgatccag gagatattga
     3541 atcattcatt gaattagcac acaaaacaac tcgtaaaatg aaacaaaacc tattttgggg
     3601 agctggttat aactttatag ctatccctct agctgcagga attttggctc ctattggtat
     3661 cacattaagc cctgcattag gaggaatcct aatgtctgtg tcaacagtca tcgtcgccat
     3721 taatgctatg ttattaagtt tagatccaaa aaataacggt taacagatcg aatgattgaa
     3781 actccttaaa gtatcaagat acaatagttt tacaggagaa aaagagatgt aagtactggc
     3841 tctttgtaaa atcgtgttgg tagaagtaga cgatttt
//
LOCUS       DASGAC010000172         3874 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.174, whole genome shotgun sequence.
ACCESSION   DASGAC010000172 DASGAC010000000
VERSION     DASGAC010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3874)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3874)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3874
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.174"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(20..559)
                     /locus_tag="U1335_001895"
     CDS             complement(20..559)
                     /locus_tag="U1335_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEM5232347.1"
                     /translation="MTRVAVVLADGFEEIEALAPVDVFRRAHFDCQIIGLDSHEVEGS
                     HGIRVQTDQVFDGDLSSFDLIVLPGGMPGSVHLRDSESLITELQRAVASGKSVAAICA
                     APIVLDKAGLLDSRHYTCFPGKEKDIPSGIHLEEDVVVDGPIITSRGAGTSLDFAYKL
                     VDLFGGDGESLAQTMVYHS"
     gene            complement(573..1802)
                     /locus_tag="U1335_001896"
     CDS             complement(573..1802)
                     /locus_tag="U1335_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEM5232348.1"
                     /translation="MRKLMKNRGTIDSRVDYSLILPVFFLLVVGIISLYIAVSQDYPN
                     NVVQMVGQQIAWIGIGTVAAFLVMFFSTKFLWQITPYLYVLGLGLMVLPLFFYSPDLV
                     ASTGAKNWVTIGGMTLFQPSEFMKIAYIIMLSRVIVTFHKYYPNRKIREDFMLIGYMT
                     LFTIPVLILLALQKDLGTSLVFVAIFSGMLLLSGVSWKILLPTALTGIVLVGGFMLIF
                     ISPGGTTFLHNLGMDTYKINRIAAWLDPFKNAQSTTYQQAQSLIAIGSGGLKGLGFNK
                     TNLLIPVRESDMIFTVIGEDFGFIGGTVLIVLYLLLIYRMLRVTLKSNNRYYTYISTG
                     YIMMLLFHVFENVGAATGLLPLTGIPLPFISQGGSSMVSNLIGVGLVLSMGYQSRLAD
                     EKETNRSRRYRKITIKR"
     gene            2817..3874
                     /locus_tag="U1335_001897"
                     /pseudo
     CDS             2817..3874
                     /locus_tag="U1335_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775264.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
BASE COUNT         1309 a          808 c          693 g         1064 t
ORIGIN      
        1 ctccatcttc ttcattactt taactatgat aaaccattgt ttgagctagg ctttccccat
       61 ctccaccaaa taaatcaacc aatttatagg cgaaatccaa acttgttcca gcacctcggc
      121 tagtgataat tggaccatca acgaccacat cctcttccag atgaatacct gacggaatgt
      181 ctttttcttt ccctgggaaa catgtatagt gacgactatc taacaaacca gccttatcca
      241 gaacaattgg agccgcacag attgctgcta ctgattttcc tgatgcaacc gctctttgca
      301 attccgtaat cagggactct gaatctctaa ggtgaacaga acctggcatt cctcctggta
      361 aaacaatcag atcaaaggaa gacaggtctc catcaaagac ttggtcagtt tgaacacgaa
      421 taccgtgcga tccctccact tcatgactat ctaaaccaat aatctgacaa tcaaaatgag
      481 ctcgacggaa tacatctaca ggggccaatg cttcgatttc ttcaaaacca tcggctaaaa
      541 caaccgcaac tcttgtcata taaaccaact ttctaacgtt ttatcgtaat ttttctatag
      601 cgacgtgatc gatttgtttc cttctcatca gctagtcgtg actgataccc cattgacagc
      661 actagaccaa caccaatcag atttgaaacc atggacgaac caccttggga gataaacggc
      721 aaaggaatac ctgttaaggg caacaaaccc gttgcagcgc caacattttc aaacacatgg
      781 aacaagagca tcatgatata gccagttgat atgtaggtgt agtatcgatt gtttgacttc
      841 aacgttaccc gcagcattcg ataaatgagc aacaagtata gtacaatcaa taccgtccca
      901 ccaataaaac caaagtcctc tccaatcacc gtaaaaatca tatcactttc tcgaaccggt
      961 atcagaagat ttgttttatt gaaacctagt ccttttaagc caccacttcc gatagctatc
     1021 aaactttgag cttgctggta ggtcgttgat tgggcatttt taaagggatc aagccaggct
     1081 gcaatacgat tgattttata agtatccatc cccaaattgt ggaggaatgt tgttccacca
     1141 ggagaaataa aaatcagcat aaatccacca accaaaacaa tccccgttaa ggcagtcggt
     1201 aatagaattt tccaagaaac tccagataat agaagcattc cgctaaagat tgctacaaat
     1261 actaaggagg ttcctaaatc tttctgtaag gccaacaaaa tcaagactgg gatagtaaac
     1321 agtgtcatat aaccaatcaa cataaaatcc tcacgaattt ttcgatttgg ataatattta
     1381 tgaaaggtga caatcaccct tgacaacata atgatgtagg ctattttcat aaattcggat
     1441 ggttgaaaaa gagtcattcc accaatcgtt acccagtttt ttgctcccgt tgacgctact
     1501 aagtctggac tgtagaaaaa caaaggcaat accataagtc ctagcccaag tacgtacaag
     1561 taaggtgtga tttgccacag aaacttagtg gaaaagaaca tgaccaaaaa agctgccact
     1621 gttccaattc ctatccaagc aatttgttga ccaaccatct gtacaacatt attcggataa
     1681 tcttgactaa ccgcaatgta gagagaaata atccccacaa ctaataaaaa aaagaccggt
     1741 aaaataagtg agtagtctac tcgactatcg attgtgcccc tatttttcat caatttcctc
     1801 atactttcac ttcaaattct tactcgttcc attatagcag aaatcatctc tcattgaaac
     1861 taaaaatcta gttacatcag tggggatacg atttatactc aacgaaaatc aaaagtagcc
     1921 taggaaagaa gtcgaagata gaactggggt tcatcaaggc tcttgacaac ggataatttt
     1981 gattttcgaa gagtattact agtgcacaaa tcataaaata cgtatcaagg ctttcagcta
     2041 ttctttaaat aattactata ttaagtatag aaaaggctac ttgtaattct gtttgtgtct
     2101 gcgtattgtc gtaagctgcc tgtgtggtat gccagccaac agttaagggc ttttttaatt
     2161 ttgtcattac aaaaaggtgg aatagttttt attctgcctt ttattgttat tctacgatgt
     2221 tacggaaaaa cgccaacccc agcaggtcgg cgcgtggaaa tatacaaatt gattgacata
     2281 taacctataa tgggggtata atcatagtgt aaagaattgt tgtgaggaca attctagcac
     2341 taaatcaaaa aagcccccaa cgtgccagcg ttgagggttt ttgtttgccc ctgtttgggg
     2401 ttagtcgtcg ttatcgtcta aataatactt aactacttca gtcaagatat taaccaataa
     2461 cggcgctaga atacttgtga ggataagctc tagcaactaa atcacctccc ttcagtaaat
     2521 tcagggggct tgtatatctt atcagataat ttattttgtt gtcaaattct ccccgcttac
     2581 acatggcaac atgtaagcaa ccatattttt atgattgata tttaatccca aatactataa
     2641 actagataaa cggagaaagc atttataacg cccgagggtg tatatttgcg tgaggtgtct
     2701 agttttgcta ggcacttttt tcattcttag caacactatt agaaaccact tataaacacg
     2761 cgcatactat tttattcttt cgattaggtg gggaaaccaa taggaggaat aaacaaatga
     2821 ttaaacaata ccaactaaaa gacggctctg ttagatactc ttatattgct tatgtaggta
     2881 tagatccact tacaggcaaa gaaaaacgcg taaaaaagag cggttttaaa actcaaaaag
     2941 aagcccgaat agctgaaagc cagctacttc taaaagtgga gcaagacgga ttttttgaca
     3001 agccagatag aataaccttt gaggaagtct ataagatatg gctggaacac tataaaaaca
     3061 ccgtgaaggc tagtacatac gccagacaaa aggcacaagc agacctacat atcattccag
     3121 catttggcgc gtgctacgtg gataaaataa gcctaccaat gtgccaaaaa caggcataag
     3181 aatggtttaa gggctacaag aaatacgcta actttatcgg tatgactaag atgattttag
     3241 attttgcggt aaacctgggc tatattcatg ataaccccat gaagaagata ataaagcccc
     3301 gtaaatcctc tgaagtcgat gaagaagaaa agaaaaaaga gaactttaca gccgtgaaga
     3361 cttgcaaaag ttcctagact gcctagcaaa ggaagacaag gaagaaatag cctgtatttt
     3421 ccgcttactc gcctttacag gtatgagaaa aagcgaagtt cttgccctac ggtggaaaga
     3481 cttagacttc tttacctcac gtttatcagt tagccaaata gtagcctacg gagaaaataa
     3541 cagtatcgtc tatcaaacac ccaaaacaaa aaagagtaag cgcactatca cgcttgaccc
     3601 tattaccgtg tctattctga aaaagtggga aaagactaga caatttttaa acttccccca
     3661 gcgcgtgaaa ccaactgacc tagtttttcc agcagaaaca ggcaacgcac atagttttga
     3721 ttatataaac tataatctac gttgtattct gaaaaaatat gacttgcctt atataacgcc
     3781 ccacggtttc cgccatactc attgtagttt attatttgaa gctgggcatc gattaaggaa
     3841 gtacaagaac gattagggca tgaagatatt aaaa
//
LOCUS       DASGAC010000173         3809 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.175, whole genome shotgun sequence.
ACCESSION   DASGAC010000173 DASGAC010000000
VERSION     DASGAC010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3809)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3809)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3809
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.175"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..316
                     /locus_tag="U1335_001898"
     CDS             <1..316
                     /locus_tag="U1335_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM5232349.1"
                     /translation="YYPVSSILIEFLVLAIVEKQDSYGYEISQTIKIVADIKESTLYP
                     ILKKLEKAGYVTTYTQEFQGRKRKYYTITPAGREHIPFLQGEWNSYKDHIDGIIEGSL
                     RK"
     gene            313..1425
                     /locus_tag="U1335_001899"
     CDS             313..1425
                     /locus_tag="U1335_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
                     /protein_id="HEM5232350.1"
                     /translation="MTRADYLNQLEQALFQLHPSARQEALDYFNEYFDEKDNDEEAII
                     ELGTPDEAAKEIIANLPEDALITEKDQASPHSSKPFDFNFDFDFQFDWENFFNNFKHS
                     AYQARERINLTAKIEELPEFSNLQISLEDQALSVQSYDGETVLLHNPVSEDGSYQAFD
                     YQLVQDSLYLTSKPAPNRLYFSNNQTSSAILKIPKKLLPLTSLNLKTTDSSLTIVDVQ
                     VCEQMVVNAKDSSISMTKVSCPSSALRLEDATLTISDGQLSELKLEASDAVITLSSMS
                     LSDARITLEDCVWKLKDFVLEKSLNCQAEDSVLTYKPSTDISLDIWEEDSSLKLPKDK
                     AFTMMKEDDITHLSYKQENSPAQLVIHCQDCQLTIG"
     gene            1437..2015
                     /locus_tag="U1335_001900"
     CDS             1437..2015
                     /locus_tag="U1335_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1700 domain-containing protein"
                     /protein_id="HEM5232351.1"
                     /translation="MNRKEYLQKLEKQLRHLPKDDFQDTLDYFNEYFEEKENDEQAIQ
                     ELGSPKDAAREILANLYDKEKIEDKPNTRNMVWLTILSILAAPIGIPLAISLIALFIT
                     LLLIIFSLFLLLISLWIVLLSLAIAQLLLAFDLFTLSWSTSLLFTGLALICLALTLLG
                     SKFTLDLGSKTFLLVLHWIQRKIRKGGYYETA"
     gene            2002..2856
                     /locus_tag="U1335_001901"
     CDS             2002..2856
                     /locus_tag="U1335_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
                     /protein_id="HEM5232352.1"
                     /translation="MKQLKPFTKISLSLLGLGAILSLIGYLAGGWTNMKNIGENYFQP
                     QTASFTDIRSIEVNERLSIMPSPDNQFHLHYYRNQHKGIDLLSHQVQDGKLTISSAYQ
                     GIVTYDGLLEPILNLVNDQNIAYYQPVLQVPKNSTIESLSGSIQGDVYLDKVTIQDFQ
                     LFVENGDMLIENSHISLIRLLHINGEVAINQSTLTSPADITDTTGSILTVEDGDFKAE
                     NLKLEGKHDISNYDGSIDISLHPQTKTDIHIDASQNNLGIDLPTYSNPQATNYLNIST
                     LDGELNIQ"
     gene            complement(2892..3251)
                     /locus_tag="U1335_001902"
     CDS             complement(2892..3251)
                     /locus_tag="U1335_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1304 domain-containing protein"
                     /protein_id="HEM5232353.1"
                     /translation="MSIFTTILASIVAIEHLYIMYLETFATHSDSTSRVFNMEKEELQ
                     RKSVTTLFKNQGIYNGLLAVFLIYGIFTGNLEVTTIFVLFVIGAAGYGAATSSPKIIL
                     TQGGPAILALISILLFK"
     gene            complement(3281..3706)
                     /locus_tag="U1335_001903"
     CDS             complement(3281..3706)
                     /locus_tag="U1335_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM5232354.1"
                     /translation="MQEMEDLLYRLKVADETISNLFEKQLGISLTRYSILQTLLKDAP
                     LHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNP
                     SDHHQAIKTSMNQILTVEESEQFLATLDKLLIGLQNLPI"
BASE COUNT         1207 a          862 c          702 g         1038 t
ORIGIN      
        1 gtactacccc gtatcctcta tcttgataga atttctggta ttagccatcg tggaaaagca
       61 ggattcctac ggctatgaaa tcagtcaaac catcaagata gttgctgata taaaggaatc
      121 cacactctac cctattttga aaaaattgga aaaggctggc tatgtcacca cctacaccca
      181 agaatttcaa gggagaaagc ggaaatacta taccatcact cctgctggac gtgagcatat
      241 ccccttcctg cagggtgaat ggaatagcta caaagaccat attgacggaa ttatagaagg
      301 gagcttacga aaatgacacg cgcagattat ttgaaccaac tggaacaagc attatttcaa
      361 cttcatccaa gtgccagaca ggaggcttta gactacttca atgagtattt tgacgaaaag
      421 gataacgacg aggaagctat tatagagcta ggaacacctg atgaagcagc aaaagaaatc
      481 attgccaatc tacctgaaga tgccctaatc accgagaaag accaagcaag tccacattca
      541 tctaaaccat ttgatttcaa ctttgatttt gattttcaat ttgactggga gaattttttc
      601 aacaatttta aacattcagc ctatcaagct agggaaagaa ttaatttgac ggcgaaaatc
      661 gaagaattac ctgagttttc aaatctacag atttcgcttg aagatcaggc tcttagcgtt
      721 caaagttacg acggagaaac tgtcttattg cacaatcctg tttcagaaga tggtagctac
      781 caggcttttg actatcaact ggttcaggat agtttgtacc taacaagcaa gcctgcccct
      841 aatcgcctct acttctcaaa caatcaaacc agctctgcta ttctcaaaat ccctaaaaaa
      901 ctactgcccc ttactagtct caatctgaaa acgacagata gcagtctaac aatagtggac
      961 gtgcaagtat gcgaacagat ggtcgttaat gcaaaagata gcagtatcag catgacgaaa
     1021 gtgagctgcc caagctctgc tctacggtta gaagacgcta cactaactat ctcagatgga
     1081 cagctgagcg agttaaaatt ggaagccagc gatgctgtta tcactctctc aagcatgagc
     1141 ctttcagatg caaggataac attagaagac tgtgtctgga agttgaagga ttttgtcctt
     1201 gaaaagagcc ttaactgcca ggctgaagat tctgtcttaa cctataaacc gagtacagac
     1261 atcagtttgg acatctggga ggaagattct agccttaaac ttccaaagga taaggcgttt
     1321 acaatgatga aagaggatga catcactcat ctcagctata agcaagaaaa tagccctgct
     1381 cagctagtta ttcattgtca agactgccag cttaccatcg gataaaggag gttcccatga
     1441 atcgcaagga atatttacag aaactcgaga aacaactgag gcatctacca aaagatgatt
     1501 ttcaagatac cttagactat ttcaatgaat attttgaaga aaaggaaaac gatgagcaag
     1561 ctattcaaga gctaggcagt ccaaaagatg cagcccgtga aattctagcc aatctctatg
     1621 ataaagagaa gattgaggat aagccaaata cccgcaatat ggtctggctg accatcctct
     1681 ctatccttgc cgcaccaatc ggcatccccc tagcaatcag cttgattgcc ctcttcatca
     1741 cccttctcct aatcatcttt agcctctttc tgctccttat ctcactctgg atcgtcctcc
     1801 tcagcctggc aatcgcccag ctactcctcg cctttgacct cttcacacta tcatggtcta
     1861 cctccctgct cttcacaggc ctggccctca tctgcttggc cctcactcta ttgggtagta
     1921 aattcactct agaccttgga agcaaaacct tcttgcttgt tttacattgg atacaaagaa
     1981 agatccgcaa aggaggctat tatgaaacag cttaaaccat ttacgaaaat cagtctgagc
     2041 ctgctaggtc ttggagccat tctaagcctc atcggctacc ttgctggtgg ttggacaaat
     2101 atgaaaaaca ttggcgaaaa ctactttcag ccccagacgg caagctttac ggatattcgt
     2161 tctatagagg tcaatgaaag actgtccatt atgccctcgc ctgacaacca attccacctc
     2221 cactactacc gaaatcagca caaaggcatt gacctcctca gccaccaagt tcaagatgga
     2281 aaattaacca tttctagtgc ctatcaaggc atcgttactt atgatggttt actcgaacct
     2341 atcttaaatc ttgtcaatga ccagaatatt gcctactacc aacctgtctt acaggtccct
     2401 aaaaatagca caatcgaatc actctcaggg agcattcaag gagatgtcta tctggataaa
     2461 gtgactattc aagatttcca actctttgtt gaaaatggtg acatgttgat tgaaaacagt
     2521 cacatcagcc ttattaggct attacacatc aatggagaag tagcaatcaa tcagtccaca
     2581 ttaacaagtc cagcggacat caccgatact accggaagta ttctaactgt tgaggatggt
     2641 gattttaaag cagaaaacct aaaactagag ggaaagcatg acatcagtaa ttacgatggt
     2701 tcaatcgaca tttctcttca tccccaaaca aaaactgaca tccatataga tgccagtcaa
     2761 aataatctgg gaattgacct tccaacctat tccaatcccc aagccactaa ttacctcaac
     2821 atctctacac tagatggaga actgaatatt cagtaattgc aaaaagccct cctaacggaa
     2881 ggctttttaa cctatttaaa caacaaaata gaaatcaagg ccaagattgc tggtccacct
     2941 tgggttaaga tgatttttgg actagaagtc gctgctccgt agcctgctgc tccaataaca
     3001 aacaagacaa aaatagttgt cacttcaagg ttacctgtga aaattccata gataaggaag
     3061 acggccaaca aaccattata gattccctgg tttttaaata gggttgtcac agacttacgt
     3121 tgtaattctt ccttctccat attgaatacg cgactagtag agtctgaatg ggtcgcaaag
     3181 gtttccaaat acatgatata taggtgctca atagctacga tactagctag aatagtggta
     3241 aaaatagaca taatgtctcc tctcaaaaaa ttataaaaaa ttatataggt agattttgca
     3301 agccaatcaa tagtttatca agagtggcta ggaattgctc gctctcctca acagttagaa
     3361 tctgattcat cgaagttttg atagcttggt ggtggtcaga aggattcgtg attagcgctt
     3421 ccctagcctg ctcagttggc cagacaagta cttctctctg attgtcagga tttcgcttgc
     3481 gaataatata gccgctctct tccaacaatt tgagatgacg cgtaaccgct gcgcggtcta
     3541 tctgaagccg ctcctgcaaa gccaactgat gcaggggtgc atcttttagt aatgtttgca
     3601 atattgaata gcgtgtcaaa ctgattccca actgcttttc aaaaagattg gaaatcgtct
     3661 catctgctac tttcagtctg tataacaaat cttccatttc ttgcattatc tacctctctt
     3721 gattgattaa tcaatcattg ataagtcaat tatactacaa tccgaataat tttcaactat
     3781 tttgcctatc ttttaaaaaa atatgttgc
//
LOCUS       DASGAC010000174         3730 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.176, whole genome shotgun sequence.
ACCESSION   DASGAC010000174 DASGAC010000000
VERSION     DASGAC010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3730
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.176"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..853)
                     /locus_tag="U1335_001904"
     CDS             complement(<1..853)
                     /locus_tag="U1335_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HEM5232355.1"
                     /translation="MTDITLRHMTLGELLKDNRLHIPNYQRPYKWQRKHIRHLFYDVK
                     EVIDSKKAIYQVGSLILHDKKQILDIVDGQQRTISVALFLQALGRLNDYIGAQQLLNQ
                     KFDVVSCQHAKENFEEWKILIDLDDEKAQKVCDFLLKNCEIAVITMPHNRLSEAFQLF
                     DSQNNRGKALEPHDLLKAYHLRNASEISEDLIENWEKIVTDEKVNLKDLFNQYLFRVR
                     RWSIGETGLTKRRQGSYLRFTEDFIDDFKGVGLHHNDYPYLNLFRLLKEQNIDYPISL
                     TMPIIDGE"
     gene            complement(1075..2025)
                     /locus_tag="U1335_001905"
     CDS             complement(1075..2025)
                     /locus_tag="U1335_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HEM5232356.1"
                     /translation="MNDQERLLIIFLRLQSGAHLKKSQLADEFGVSEKTIQRDFALLG
                     GFIESQPMIAAELAYDSKYHTRFLKGKSLFNKKEILTISKILLENRALNKEENKAVLD
                     SLFALVSKDEQKEISAIIASELLNYAPLSDTQNRIDKIWEWSEAIRKELVLDIRYQSP
                     YNVEKKHTVFPVSLYYDSHYFYLVAYNLKHSSYMTLKLDRILEWKVSTEKKPEISYGK
                     KFRDGEVRNKRVDSFMGRELIIRVRFSYDPTIVLDQFPTAKIIETSSEGNVIEFVSQD
                     TPGLKRWLLSQADALTVLSPSSLVEDMKYFLKNMQENYKN"
     gene            complement(2059..2589)
                     /locus_tag="U1335_001906"
     CDS             complement(2059..2589)
                     /locus_tag="U1335_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232357.1"
                     /translation="MNNNGLNENAVFNDMEILEIFIDLLYRNLDSDTKVRSSFDSINR
                     EVSDFFGIPQKSYIGQLLYIISDVDHIRRSFVDHIEFYYQEMNRKVKRVVGVSLAIEI
                     IQNVHFLEEFDVVMIENIEEFYNSTDAIQKKLARILESYLETGGKLLVTGCEFDNSND
                     ALSNILYQGNLLNLTC"
     gene            complement(2606..>3730)
                     /locus_tag="U1335_001907"
     CDS             complement(2606..>3730)
                     /locus_tag="U1335_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM5232358.1"
                     /translation="IIEFPPYTHDELVEIAIQLLAKRRISIDKKIVREYVEKTSNLNN
                     AKDIRRMVQRIHEYAVATNYCQENGLIDLCHFSLQKEQSKSKCGQAEKRLNQMIGLQS
                     VKKLIRQQVAFEQLSKLRKERGYHVEESNGHLLFTGNPGTGKTEVARLYTEILYEHGL
                     IAENKIVEVGRADLIGEYVGQTAPKIKTVFDSASGGVLFIDEAYSLIPQSERDFANEA
                     IPTIIQEMENRRNEVVVIFAGYKDLMHNFIDTNPGLQSRISNIIHFEDYSVDELYEIF
                     RMMLSNKCYSIESSCERVLRSHFSKVGTTEHFGNGRYVRKLIEASLYQQATRVMEKID
                     NRTLEETEMNVVIEADIKNAIQELSELESTQRLIGFGLQG"
BASE COUNT         1100 a          789 c          551 g         1290 t
ORIGIN      
        1 actctccatc aataattggc atcgttaaag aaataggata atcaatattt tgttctttta
       61 atagtctaaa gagattcaaa taagggtaat cgttatgatg taaaccgaca cctttaaaat
      121 catcgataaa atcttctgta aagcgaaggt atgaaccctg acgacgtttg gtcaacccag
      181 tttcaccaat tgaccaccgt cgcactctaa aaagatattg gttaaataaa tcttttaaat
      241 tgaccttttc gtctgtaaca attttttccc aattttcgat caaatcttca ctgatttcag
      301 aggcatttct caaatgatag gctttaagca ggtcgtgtgg ctctaaagct tttccccgat
      361 tattttgaga atcaaaaagt tggaaagctt cagataatcg attatgtggc attgtaataa
      421 cagcaatttc acaattttta agaagaaagt cacatacttt ttgcgccttt tcatcatcta
      481 ggtcaatcag tattttccat tcttcaaaat tttccttagc atgttgacac gaaaccacgt
      541 caaatttttg atttagtaac tgctgggcac cgatatagtc gttcaacctc cctaaagcct
      601 gtaaaaataa tgcaacagaa atagtacgct gttgtccatc aacaatatct aaaatttgtt
      661 ttttatcgtg taatataaga gaaccaacct gatagatggc ctttttagag tctataactt
      721 ctttgacatc atagaataag tggcgaatgt gtttacgttg ccatttataa gggcgttgat
      781 aatttgggat atggagcctg ttatccttca aaagttcccc taacgtcata tgcctcaaag
      841 taatatcagt cattctgctt attctcctat tttttctcta cacttgcatt cggaatcatt
      901 ttcgcatgca tttccgcggc tgttttgtca taaaatggtc ctgcaatgac attcccaaat
      961 tgatctacta caatccattc ttgcatttac ttctcctcct ttcaattaag aattcaatat
     1021 ctatttgata catccattct aatacatagg gtggacgaat aatgtcctac ctttctaatt
     1081 tttatagttt tcttgcatat ttttgagaaa atatttcata tcctctacaa gcgaactcgg
     1141 agaaagcacg gttagggcat ccgcctgact cagcaaccaa cgttttaagc ctggtgtgtc
     1201 ttgactgaca aattcaatca cattgccctc tgagctggtt tcgataatct ttgctgtcgg
     1261 aaattgatcc aagacaatgg ttggatcata gctaaatcta actcttatga ttagttcccg
     1321 tcccataaaa gagtccacac gcttattccg tacttcaccg tctcgaaact ttttgccata
     1381 agaaatctcc ggtttcttct cagtcgaaac tttccactct aaaatccgat ctaactttaa
     1441 agtcatatag gaggaatgtt ttagattata agctacaagg taaaagtaat gactatcgta
     1501 atagagtgac acaggaaaaa ccgtgtgttt cttttctaca ttgtagggag attggtagcg
     1561 aatatctaat accaactcct tacgaatggc ctctgaccat tcccaaatct tatcaatcct
     1621 gttttgagta tctgaaagcg gggcatagtt taatagttca ctagcgatga tggcagaaat
     1681 ttctttctgc tcatctttcg ataccagagc aaacaagcta tctaaaacag ccttattttc
     1741 ttccttattc aaagcccgat tttctagcaa aattttagaa atggtcagaa tttccttttt
     1801 gttaaaaaga gacttccctt ttaagaagcg agtatggtac ttggaatcat aggctaactc
     1861 tgctgcaatc atcggctgac tttcgataaa tcctcctagc agagcaaaat ctctctgaat
     1921 tgtcttctca ctgactccaa attcatctgc caactgtgat tttttcagat gtgctcctga
     1981 ttgtaaacgt aaaaatatga ttagtagtct ttcttggtcg ttcatataaa cctcaattct
     2041 aacaagatta taccactctt aacaagtcaa attcaataaa tttccttggt aaagaatatt
     2101 gctcaatgcg tcatttgaat tatcaaactc gcaacctgtt accagtaatt ttccgcctgt
     2161 ttctagataa ctttccaaaa ttcttgccaa cttcttctga atcgcatcgg tactattata
     2221 aaattcttca atattttcaa tcatcacaac atcaaattct tctagaaaat gaacattttg
     2281 tattatttct atagccagac tgactccgac tactcttttc actttcctat tcatctcttg
     2341 atagtaaaat tctatgtggt caacaaagct ccttctgatg tgatcaacat ccgaaataat
     2401 gtataaaagt tgtccgatat agctcttttg agggattcca aaaaaatcac tcacttcccg
     2461 attgatactg tcaaaagagc ttctcacctt ggtatccgag tccaaatttc tgtatagcaa
     2521 gtcgataaat atttctaaaa tttccatatc attaaacaca gcattttcgt tcaaaccatt
     2581 gttattcatg tacatttcct ttcttctatc cctgtaatcc aaaacctatt aaccgttgag
     2641 ttgattccaa ctctgataat tcttgaatgg cgttcttaat atcagcttct attacgacat
     2701 tcatctctgt ttcttctaag gtcctattgt ctatcttttc catcacccga gtcgcctgtt
     2761 gatacaaact agcttctatt aatttacgaa cataacgacc attaccaaaa tgttcggttg
     2821 ttccaacttt tgaaaaatgc gaacgcaata ccctctcaca gctcgattca atggaatagc
     2881 acttattgct caacatcatt ctaaaaattt catagagttc atccacggaa taatcttcaa
     2941 aatgaatgat gtttgagatt cgagattgta atcccggatt cgtatctata aaattgtgca
     3001 tcaaatcttt atagccagca aaaataacaa ccacctcatt gcgacgattt tccatttctt
     3061 gaataatggt tggtatagct tcattggcaa aatctctttc actctgtgga ataagactgt
     3121 aggcttcatc gataaacaat acaccaccac ttgcgctatc aaacaccgtt tttatttttg
     3181 gcgctgtttg accaacatat tccccaataa gatctgctct tccaacctct actatcttgt
     3241 tttctgcgat caatccatgt tcatacagga tttctgtata aagacgagct acctctgtct
     3301 tacccgtccc tggatttcct gtgaataaca agtgcccatt actttcttca acatgatagc
     3361 ctctttcttt cctcagtttc gatagttgtt caaaagcaac ttgttgtctg attaattttt
     3421 tgacagattg aagaccaatc atttgattca gcctcttctc agcttggcca catttgcttt
     3481 tagattgttc cttttgcaaa ctaaagtggc aaagatcaat caatccattt tcttgacaat
     3541 aattggttgc caccgcatat tcatggattc tctggaccat tcgtcgaata tcttttgcat
     3601 tgttgagatt tgaagtcttt tctacatact ccctaacaat tttcttgtct atactaattc
     3661 gtctttttgc taatagttga atagcaattt caactagttc atcatgtgta taaggtggaa
     3721 actcgataat
//
LOCUS       DASGAC010000175         3669 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.177, whole genome shotgun sequence.
ACCESSION   DASGAC010000175 DASGAC010000000
VERSION     DASGAC010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3669)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3669)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3669
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.177"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(43..675)
                     /locus_tag="U1335_001908"
     CDS             complement(43..675)
                     /locus_tag="U1335_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEM5232359.1"
                     /translation="MKEFKTIREDGIVEEEIKKSRFICFMKRVTSEEEARDFINKIKK
                     EHYKATHNCSAFVLGENMEIKRSSDDGEPSGTAGVPMLTVLENHELTNVATVVTRYFG
                     GIKLGAGGLIRAYAGAVANAVKEIGVVEVKEQEGISISMSYAQYQEFANWRAGQGLEE
                     FDTQFTTEVSTMIFVDKEFLEQTLASLTDFYHGKVSAEKANSRIVEVPVY"
     gene            732..2024
                     /locus_tag="U1335_001909"
     CDS             732..2024
                     /locus_tag="U1335_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5232360.1"
                     /translation="MKELENYYGRLFTKYQLTAKEREIAEKVPSITKKNNCFRCGTTF
                     EEENKLPNDAYYCRACLLLGRVRSDEKLYHFPQKDFPITKCLKWKGQLTDWQQRISDG
                     LVANVENNRATLVHAVTGAGKTEMIYHTVASVIDKGGAVCLASPRIDVCIELYKRLQN
                     DFSVPISLLHGESEPYFRTPLVVATTHQLLKFYQAFDLVLIDEVDAFPYADNPMLYQA
                     ADNAVKEDGVQVFLTATSTDELDKKVRTGKLSRLSLPRRFHGNPLVVPQKVWFSKFDD
                     TLKKNRLVPKLKKAIEEQRKSCFPLLIFVPEISKGQEFTKIMKKTFPEETIGFVSSQT
                     ENRLEIVEGFRKREITVLISTTILERGVTFPCVDVFVVQANHYLYTASSLVQIAGRVG
                     RSMERPTGLLQFYHEGSTGAIEKAIAEIKQMNKEAGYV"
     gene            2017..2682
                     /locus_tag="U1335_001910"
     CDS             2017..2682
                     /locus_tag="U1335_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEM5232361.1"
                     /translation="MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQ
                     HCPHCYKNGESESCKDCQYWQNQGKPVVHTALYRYNQAMAHYFSRYKFQGDYVLRNIF
                     AKKLRIALSQFPDYTIVPIPISQKRLLERGFNQVEGLLSATNIPYQSLLGKYESQKQS
                     SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFS
                     LTR"
     gene            2759..3301
                     /gene="raiA"
                     /locus_tag="U1335_001911"
     CDS             2759..3301
                     /gene="raiA"
                     /locus_tag="U1335_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000599099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HEM5232362.1"
                     /translation="MIKFSIRGENLEVTDALRTYVEEKVAKIEKYFNEEQELNAKVNL
                     KVYRDKRAKVEVTIPVGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTKIERKHRQ
                     KVATGQVFTDELVEQTGEEVKVVRTKQVDLKPMDMEEAVLQLELLGHDFFIYTDANDG
                     TTNVLYRREDGDLGLLEVRQ"
BASE COUNT         1266 a          656 c          745 g         1002 t
ORIGIN      
        1 aaaaaggata atataaaaaa actatctcgc cgatagcttt ttttaataga caggtacctc
       61 aacgatacga gagttagctt tttccgcgga tacttttccg tggtaaaagt cagtgagact
      121 tgctaaggtt tgttcaagga attctttatc tacaaaaatc atggttgaaa cttcagtagt
      181 aaactgggta tcaaattctt ccagaccttg cccagctcgc caattggcaa actcttggta
      241 ttgggcatag gacatgctaa tggaaatccc ttcctgctcc ttgacttcca caaccccgat
      301 ttccttgact gcattagcca cggctccagc gtaagcacga ataagtccgc ctgccccgag
      361 tttgatacct ccaaaatagc gggtaaccac cgttgcaaca ttggtcagtt cgtgattttc
      421 taaaaccgtc agcattggca caccagcagt accagacggc tccccatcat ctgaggaacg
      481 cttgatttcc atattttctc caaggacaaa agcagagcag ttatgagtag ccttgtaatg
      541 ttctttcttg attttgttga taaagtcgcg agcttcctcc tcgctagtca ctcgtttcat
      601 aaagcagata aatcgtgact ttttaatttc ttcttcaaca ataccatctt ctctaattgt
      661 tttaaattct ttcataacca aattgtacta atttttttaa aaactgacaa gaaattccga
      721 ataaataagt gatgaaagaa ttagaaaatt attatggaag attatttacc aaataccaat
      781 tgacagcaaa agaaagagaa atagcagaaa aagtgccaag tattacaaaa aagaataact
      841 gctttcgctg tggaacaact tttgaagaag aaaacaaatt gccaaacgat gcttattact
      901 gtcgagcctg cttgcttcta ggcagagtgc ggtcagacga aaaactctat cattttcctc
      961 agaaagattt tccaatcact aagtgtttaa aatggaaagg tcaactaact gattggcaac
     1021 aaagaatttc agatggacta gttgcaaacg tggaaaataa tcgtgcgaca ttggttcatg
     1081 cagtaacagg agcaggtaag acagaaatga tctaccacac cgttgcctca gtgattgata
     1141 aaggcggagc ggtgtgccta gccagtcctc gaattgatgt ttgtatcgaa ctctataaac
     1201 gtctgcaaaa tgacttttca gttccaatta gtttactaca tggagagtct gaaccctatt
     1261 tccgaactcc attagttgta gcaaccacac atcagttatt aaaattttat caggcctttg
     1321 atttggtttt gattgatgaa gtagacgcct ttccctatgc agataatccc atgctctatc
     1381 aagcagcaga taatgcggtc aaggaagacg gagttcaagt ttttctgacg gcgacttcaa
     1441 cagatgaatt ggataaaaaa gtcagaacgg gcaaattaag ccgtcttagt ttgccaaggc
     1501 gctttcatgg caatccgctt gttgtcccgc aaaaagtctg gtttagtaaa ttcgatgata
     1561 ccctaaagaa aaatagacta gttccaaagt tgaaaaaagc gattgaagaa cagagaaagt
     1621 cgtgctttcc cttactcatt tttgtcccag aaatctccaa aggtcaagaa tttaccaaga
     1681 taatgaaaaa aacattccca gaagaaacaa ttggctttgt atccagtcaa acagaaaatc
     1741 gccttgaaat agttgaaggg tttcgcaaga gagaaatcac agtcttaatc tcgacgacta
     1801 ttcttgaacg tggggtgacc ttcccatgtg tggacgtctt tgttgttcaa gccaatcatt
     1861 acctctacac agcgtcaagt cttgttcaga ttgcaggccg ggtcggcagg agtatggagc
     1921 gtccgactgg tttactccag ttttatcatg aaggaagtac aggagccatt gaaaaggcaa
     1981 tcgctgaaat taaacagatg aacaaggagg ctggttatgt ctaattgtct attgtgcggt
     2041 caagctatga aaaataaaac aagattttca gatctcatct tctttagtaa agaaaaatcg
     2101 ggcatctgtg aagaatgttt ttcgactttt gaggaaatag cagagcaaca ctgtccacat
     2161 tgttataaaa atggagaatc ggaaagttgc aaggattgtc agtactggca gaatcaaggg
     2221 aaaccagttg ttcatacagc tttgtaccga tataatcaag cgatggcaca ttattttagt
     2281 cgctacaaat ttcaaggaga ctatgtttta agaaatattt ttgctaaaaa gcttagaata
     2341 gcgttaagcc aatttcctga ctacacaatt gttcccatac caattagtca aaaacgacta
     2401 ttagaacgcg gttttaatca agtggaagga cttttgagtg ctacaaatat tccctatcag
     2461 tcccttcttg gaaagtatga aagccaaaaa caatcatcta aaaatcgtgc agagagacta
     2521 gaagcaaaac agatgttcta tctattagat gaaaaagaag tgccagaaaa aatattatta
     2581 ttcgacgata tatatacaac aggagccaca atccaacttg ctgtagaact tttcatgaaa
     2641 attggtagga aagaaatcaa aacattttca ctaacacgat gagaaaacgg ttgcatttat
     2701 ttaataatgt gatataataa tagtgaagaa aggcgaaagc caagaaagag gtactaatat
     2761 gattaaattc agtattcgtg gagaaaacct tgaagttaca gatgcacttc gcacctatgt
     2821 agaagagaaa gtagctaaga ttgagaaata tttcaatgaa gaacaagagt tgaatgctaa
     2881 agtaaatcta aaagtttacc gtgacaagcg cgcaaaagta gaagtgacaa ttccagttgg
     2941 agcagttaca cttcgcgcag aagatatttc acaagaaatg tatggttcta tcgatcttgt
     3001 agtagataag attgaacgcc aaattcgtcg taacaaaacc aagattgaac gaaaacatcg
     3061 tcaaaaagtg gcaactggtc aagtctttac agatgaactt gttgagcaaa caggcgagga
     3121 agtaaaagtg gttcgtacta agcaagtaga cttgaaacca atggatatgg aagaagcagt
     3181 cctccaattg gagttgctcg gacatgattt ctttatctat acagatgcta atgacggcac
     3241 aacaaatgta ttgtatagac gcgaagatgg agatttgggt cttctagagg tacgtcaata
     3301 aagataataa aacagttgca gtttttgcag ctgttttatt attttcaaaa aaccggttga
     3361 caaagtatat aagtcgtgat agaatgaatg agttgtctct tgaggggcta gttaatagag
     3421 gaacgaaaaa aagtttcgaa aaagtgttga caagaccatc agaagatgat agaatgattg
     3481 agttgtctct tgaggaactg gttaacagag ggacgaaaaa aagtttcaaa aaagtgttga
     3541 caaagttcac aagaaatgat aaactaagat agttatcgcg agagcgcgat aacgacaaga
     3601 cctttgaaaa ttaaagaaga cgaaccaaac gtgcagggtg atttatctaa ggataaatcg
     3661 tcaatgaca
//
LOCUS       DASGAC010000176         3667 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.178, whole genome shotgun sequence.
ACCESSION   DASGAC010000176 DASGAC010000000
VERSION     DASGAC010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3667
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.178"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(24..944)
                     /locus_tag="U1335_001912"
     CDS             complement(24..944)
                     /locus_tag="U1335_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-6-phosphate kinase"
                     /protein_id="HEM5232363.1"
                     /translation="MIHLICPNPALDRTLLVEKIEKNIPLRPTEVRDYPGGKSFNVAY
                     ALRENGGTDYTIHTILGGQIGRYIQELNADGGNALRVVENNQNTRTCNIYVETSTGDV
                     VLFYEKGFELTEDLLNQFTQQIENSLQAGDILVFSGSLMKGMPDDYIQRFIEKYPEVQ
                     TIVDTSGPALQAAYQARPALIKINNEELKDIYPELDEENPEDILRILKEVTPHENIII
                     TMGGKGSLAKIGQRFFRIQSPKKETRNPIAAGDFYLGLLVKGISQGQDPELFLKEAAA
                     FATANCLNYFPEVEAEQFEEILDKVVFEEV"
     gene            complement(1041..1670)
                     /locus_tag="U1335_001913"
     CDS             complement(1041..1670)
                     /locus_tag="U1335_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM5232364.1"
                     /translation="MKMAIIAANGQAGQTIAKEALERGHQVTAIVRSENKSVAQEVIQ
                     KDAFALTKEDLAGFDVVVNAFGAWTPETLPDHARLAEHLATILAGSPTRLLVVGGAGS
                     LYLDESQTAMLKDTPDFPADYLPIAEAMGAGLDLYRQATAVNWTYISPAADFDAEGQK
                     AGAYTLAGEVFQVNAQGESYISYADYAVALVDIAEKGGYQQERISVFAS"
     gene            complement(1795..2214)
                     /locus_tag="U1335_001914"
     CDS             complement(1795..2214)
                     /locus_tag="U1335_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM5232365.1"
                     /translation="MQISSRFTIASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRN
                     ILSQLKEAGLVQVARGVGGARLAQNPDKITLLHIYQAVELFGEKGKLFGFHEQPNPAC
                     QVGRSIHPLLDSRLENAQSALEKELGQTTIADLLAEL"
     gene            complement(2257..3324)
                     /gene="dinB"
                     /locus_tag="U1335_001915"
     CDS             complement(2257..3324)
                     /gene="dinB"
                     /locus_tag="U1335_001915"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEM5232366.1"
                     /translation="MLIFPLINDLSRKIIHVDMDAFFAAIEVRDNPALKGKPVIIGAD
                     PRLSGGRGVVSTCNYEARAFGIHSAMSSKEAYERCPQAIFISGNYEKYQEVGRQVREI
                     FHRYTDLVEPMSIDEAYLDVTENKLGIGSAVKIAKLIQYDIWNELHLTASAGVSYNKF
                     LAKIASDMEKPHGLTLILPEDAVGILASLPVEKFHGVGKKTVERLHEMGVYTGQDLLD
                     VPEMALIDRFGRFGFDLYRKARGISNSPVKVDRVRKSIGKERTYRKLLYREEDVLKEL
                     ISLCQRVAASLERNEKKGRTIVLKVRYGDFSTLTKRHSLDEYTDQSEVIEREVRQLFE
                     EVGQAEKGIRLLGVTVTNFQT"
BASE COUNT         1035 a          859 c          704 g         1069 t
ORIGIN      
        1 taaatactaa taaagagtat gtattacacc tcttcgaaaa ctaccttatc taaaatttct
       61 tcaaactgct ctgcttcaac ctctgggaag tagttaagac agttagcagt tgcaaaggct
      121 gctgcctctt tcaagaagag ttcagggtct tgtccttggc tgataccctt gactagcaag
      181 cccaggtaga aatcccctgc ggcaatcgga ttacgcgttt ctttctttgg agactggata
      241 cggaagaaac gctggccaat ctttgccagg ctgccctttc cacccatggt aataatgata
      301 ttctcatgcg gcgtaacttc ttttagtatc cgcaaaatat cctctggatt ttcttcatcc
      361 agctctggat agatgtcctt gagctcttca ttattgattt tgatcaaggc tgggcgagct
      421 tgataggcag cttgtaaggc tggtccactg gtgtcaacta tggtttgtac ctctgggtat
      481 ttttcaataa atcgctgaat ataatcatcc ggcatcccct tcatcagact acctgaaaag
      541 actaggatgt cgccagcttg caggctattt tcaatctgct gagtgaattg gttgagcaaa
      601 tcctctgtta gttcaaaacc tttttcataa aatagtacta catcgcctgt actagtttct
      661 acgtaaatat tgcaggttct tgtgttctga ttattttcaa ccacgcgcag ggcatttcca
      721 ccatcagcat taagctcctg aatatagcga ccaatctgcc cacctaaaat ggtatggata
      781 gtatagtccg tccctccatt ttctcgaagt gcataggcta cgttgaaact ttttccacca
      841 ggataatccc tcacttccgt cggacggagg ggaatgttct tttcaatctt ttccacaaga
      901 agcgtgcgat ctagggctgg attgggacaa attaagtgaa tcatagggaa ctcctttttt
      961 cttttgtaca tattattata ctatataaat caaaaaaata aaaaagataa ttccacgatg
     1021 ggaactatct ttctactatt ttatgatgca aaaaccgaaa tgcgttcttg ctggtagcca
     1081 cctttttccg caatgtcaac caaagccaca gcatagtcgg cataactaat atagctttca
     1141 ccttgggcat tgacttggaa aacctcgcca gccaaagtgt aggcacctgc tttttgtcct
     1201 tctgcatcaa aatcggctgc cgggctgata taggtccagt taactgctgt cgcctgacga
     1261 tagaggtcta gaccagcacc catagcctca gcgattggca ggtagtccgc agggaaatct
     1321 ggtgtatctt tcagcatagc tgtctggctc tcgtctaaat aaagactgcc tgcaccacca
     1381 actactaaaa gacgggttgg actaccagca aggatagtcg ctagatgctc agcaagacga
     1441 gcgtgatccg gcaaggtttc tggtgtccaa gcaccaaaag cattgactac tacatcaaaa
     1501 ccagccaaat cttctttggt aagagcaaaa gcatccttct ggattacttc ttgggctacg
     1561 cttttatttt cagaacggac aatagccgtc acctgatgac cacgttctaa tgcttccttt
     1621 gcaatagttt gacctgcttg accattcgct gcaataatag ccattttcat attgatacct
     1681 cacttgtttc attgtaataa ctttacttac aacgtaagta taaatcattt cggttgtaat
     1741 gtcaattgtt acagctcgaa aattaaaaaa atcatcacaa ggatgattaa atacctataa
     1801 ttctgccaat aaatcagcaa tggttgtttg tcccaactct ttttccagag ccgactgagc
     1861 attttccaaa cggctatcta gcaggggatg gatagagcgg ccgacctgac aggctggatt
     1921 gggttgttca tgaaaaccaa aaagtttccc tttttctcca aataactcta cagcctgata
     1981 aatatgaagg agggtaattt tatctggatt ttgggccaaa cgtgccccac ctacaccacg
     2041 cgccacctga accaaaccag cctctttcaa ctgggacaaa atattgcgga tgatgactgg
     2101 attgacacct acacttcctg caatgctggt actggtctgt ttttcctttt ctccttccaa
     2161 agccaagaga accaaaatat ggctggcaat ggtaaatcta cttgaaattt gcatctcttc
     2221 tccttttttt cagtctatca tagactgaaa cagaactcaa gtttgaaaat tagtcacggt
     2281 cacacccagc aagcgaatgc ctttttcagc ctgtccaacc tcttcaaata attggcgaac
     2341 ttctctttca atcacttctg attgatcagt gtattcatcc aggctatgcc gctttgtcaa
     2401 ggttgaaaag tcaccataac gaaccttcaa cacaatggtt cgtccttttt tctcatttct
     2461 ttctaaacta gctgctactc gttggcagag actgattagc tctttcagga catcctcctc
     2521 ccgataaaga agtttgcgat aggttctttc ctttccaatt gacttacgaa cacggtccac
     2581 tttaacgggc gaattagaaa tccccctcgc tttccgataa aggtcgaatc caaagcgccc
     2641 aaagcgatct atcaaggcca tttctggtac atctagcaaa tcttgccccg tgtagacccc
     2701 catctcatgc aggcgttcca ccgtcttctt ccccacaccg tgaaattttt caacaggcag
     2761 ggaggcgaga ataccaacag catcctcagg caaaatcagg gtcagcccat gcggtttttc
     2821 catatccgag gcaatttttg ccaaaaattt attgtaggaa acacctgcgg aagctgtcaa
     2881 atggagttca ttccagatgt cgtattgaat gagtttagcg attttgaccg ctgagccaat
     2941 tccaagctta ttttctgtta catccaagta agcctcatcg atggacatag gctccaccaa
     3001 atcagtatag cgatggaaaa tttctcgaac ctgtcgccca acttcctgat atttttcata
     3061 attgccagaa atgaaaatcg cctgcggaca acgttcatag gcttcttttg aggacatagc
     3121 cgagtgaatc ccaaaggcac gcgcctcata attacaggta gataccactc ctctaccgcc
     3181 agatagtctt gggtcagccc caatgataac aggtttgccc ttcaaagcag gattatccct
     3241 gacctcaatg gcagcaaaaa aagcatccat atctacatga ataatttttc tagataaatc
     3301 attgattagg ggaaatatta acatggacac tcctttctgc tacttactac tagatatatt
     3361 atagcctatc tagcaaattt tttcataaag cgaacattga cgagcaagta gtactcaatg
     3421 aaaatcaaaa tcagactagg aaagtcagat gtagatagaa cccttctact ttcgcatttt
     3481 tagatattat agtcgaatga attagctttc agacaaggaa ctgaggtgca ggttgctagc
     3541 acagcctagt ggctgtgcta ggttggagat ataacttgca aagcaagtca cttctgcaga
     3601 gtacggcaag ccgaaagtga tgatgtatca aagttaattc aaatgactga tatgtaaagc
     3661 cctttgt
//
LOCUS       DASGAC010000177         3606 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.179, whole genome shotgun sequence.
ACCESSION   DASGAC010000177 DASGAC010000000
VERSION     DASGAC010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3606
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.179"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            87..902
                     /locus_tag="U1335_001916"
     CDS             87..902
                     /locus_tag="U1335_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEM5232367.1"
                     /translation="MIKLIALDMDGTLLNEKKELLQPQIDAIHQAIEAGVKIVLCTGR
                     PLVGVKPFVEQLGFDTEEEFIIVNNGCSTHSTKDWSLIDWEELSISDIDYLSTFIEND
                     DVQISLFDEEDYFVLAEKANARVNLDAGLVGMTPQPIDLKEAQSGQHRFFEAIFVGEK
                     EHIDAFENQHNPILSQGYSTVRSQDYLLEILPNGASKASGLKKLADRLGILPEEIMAM
                     GDANNDLEMIEFAGLGIAMGNANEQVKAIAQDITDTNENNGVAKAIEKHILNK"
     gene            912..2132
                     /gene="pepT"
                     /locus_tag="U1335_001917"
     CDS             912..2132
                     /gene="pepT"
                     /locus_tag="U1335_001917"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HEM5232368.1"
                     /translation="MKYPTLLDRFLVYVKENTRSDEHSTTTPSTQNQVEFAQNILLPE
                     MERIGLQNVHYLPNGFAVGTLPANDPSLTRKIGFIAHMDTADFNAEGVNPQIIENYDG
                     NPIALGTSGYELHPKDFPQLANYHGQTLITTDGTTLLGSDDKSGIAEIMTAIEFLVQN
                     PDIKHCEIRVGFGPDEEIGVGADKFDVEDFDVDFAYTMDGGPLGELQYETFSAAGAKI
                     DFLGRNVHPGSAKDQMINAFQMAIDFHNALPEADRPEKTEGYEGFFHLMNMEGSVDTA
                     STTYIIRDFEEADFQARKQLMLDIAEKMNANFDTPRVIVNLHDQYYNMKKIIEKDMTP
                     INIAKDVMENLGIKPLIEPVRGGTDGSKISFMGIPTPNIFAGGENMHGRFEFVSLQTM
                     EKAVDVILGIVAYK"
     gene            2263..2661
                     /locus_tag="U1335_001918"
     CDS             2263..2661
                     /locus_tag="U1335_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232369.1"
                     /translation="MTEETLAQGILIGIWGTTLLFSFIWYILVAISNYILFKKAGYAG
                     WKSLIPIYNLYIQQCIAFGYEKRWFILFLLIPLAGPLYGIYLVYNFGRSFGLSAVQAI
                     FYVLLTPIFNLYIAFNDGSRYQGPQEFFID"
     gene            complement(2697..3377)
                     /locus_tag="U1335_001919"
     CDS             complement(2697..3377)
                     /locus_tag="U1335_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018167463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HEM5232370.1"
                     /translation="MVGYWEAKKSSQQTSVGLMQLSGYNIGTFTLPFVQAFFPLSSLL
                     SVIVFDAGNAIMVLGGNYSIAAGVDEEQERMTVATFIKNLSRSVPLVVYLVSLSLAVC
                     SIKLPRELIYALTIASNANPFLAMLMLGILLDLKLNWQEISRLAYLLSLRLGANILIA
                     GVIYFLLPIDKTMKIMLLVCLVSPISVMSPIYALKLGSRSAEPANVNSLSILVSLVMM
                     VLLIFLFV"
BASE COUNT         1126 a          800 c          708 g          972 t
ORIGIN      
        1 atttttatac cgtatttctt ctagcatttc aatcattcct ttctcatttt atgctatact
       61 attcttaatg aaacaaggag gtttatatga ttaaactaat cgctcttgat atggacggaa
      121 cccttttaaa cgagaaaaaa gagctgctgc agccacagat tgatgccatt catcaggcta
      181 ttgaagcggg cgtcaagatt gttctttgta ctggtcggcc cttggttggc gttaagccct
      241 ttgtagagca gctcggcttt gacaccgagg aagaatttat cattgtcaat aacggctgtt
      301 caacgcattc gacaaaggat tggagcctga ttgactggga agaactatct atctctgata
      361 ttgattatct ttccacattt attgaaaatg atgatgtgca aatttctctc tttgatgagg
      421 aagactactt cgttcttgca gaaaaagcca atgcacgcgt taatttagac gcaggtttag
      481 taggaatgac tcctcaacca attgatttaa aagaagccca gtcaggtcag catcgcttct
      541 ttgaagccat cttcgtcggt gaaaaagagc atattgatgc ctttgaaaat caacacaatc
      601 ctatactcag ccaaggctat tccaccgttc gttcacagga ctatctgtta gaaattttac
      661 caaacggtgc aagcaaggcc tctggtttga aaaaactggc agaccgcctc ggtatcctcc
      721 cagaagaaat catggctatg ggagatgcca acaacgacct ggaaatgatt gaatttgctg
      781 gacttggaat tgccatgggc aacgctaacg agcaggtcaa ggctatcgcc caggacatca
      841 cagacaccaa tgaaaacaac ggcgttgcca aagccattga aaaacatatt ttgaacaaat
      901 aaggagacaa tatgaaatac ccaacactct tagatcgttt cttggtctat gtcaaagaaa
      961 acacccgttc agacgagcac tcaaccacca cgccttctac tcaaaaccaa gttgagttcg
     1021 cgcaaaacat tctcttgcct gaaatggaac ggattggctt gcagaatgtc cactacctgc
     1081 caaacggctt tgctgtggga acactgcctg ccaacgaccc aagtttgaca cgtaagattg
     1141 gcttcatcgc ccacatggat acggctgatt tcaacgctga aggtgtcaat ccgcaaatca
     1201 tcgaaaacta cgacggcaac ccaatcgctt tgggaacttc tggctatgaa ttgcatccaa
     1261 aagacttccc acaacttgcc aactaccacg gtcaaacctt gattaccact gacggtacta
     1321 ccttgctagg ctctgatgac aagtcaggaa ttgcagaaat catgacagcg attgaattcc
     1381 tagtccaaaa tcctgacatc aagcactgcg aaatccgtgt cggcttcggt cctgacgaag
     1441 aaatcggtgt cggtgctgac aagtttgatg tcgaagactt cgatgtagat tttgcctaca
     1501 ctatggacgg tggaccactg ggcgaactcc agtacgaaac cttctcagca gctggtgcca
     1561 agattgattt cctaggacgc aatgtccacc caggatctgc taaggaccag atgatcaatg
     1621 ccttccaaat ggctattgat ttccacaatg cccttccaga agcagaccgc cctgagaaaa
     1681 cagaaggcta tgaaggcttc ttccacttga tgaacatgga aggcagtgtc gatactgctt
     1741 ctaccaccta catcatccgt gacttcgagg aagcagattt ccaagcccgc aaacagctca
     1801 tgctggacat cgctgaaaag atgaatgcca attttgacac tccacgtgtc attgtcaacc
     1861 tgcacgacca atactacaac atgaaaaaaa tcatcgaaaa agacatgact ccaatcaaca
     1921 ttgctaagga cgtcatggaa aatctaggta tcaagccact gattgagcct gttcgcggag
     1981 gaacagacgg ctctaagatt tccttcatgg gcattccaac gccaaatatc tttgctggcg
     2041 gtgaaaacat gcatggccgc ttcgagttcg tcagcctgca aaccatggaa aaagctgttg
     2101 atgtgatttt aggtattgta gcatataaat aaacaatttg ttcagacttt caattgaagg
     2161 tctgattttt tctgaaaatc tttcaaaatt tttgaaaaac tacttgtatt attgaactaa
     2221 tactgttata atagaaccat caaaaagaaa tggagtttta atatgacaga agaaacatta
     2281 gcacagggaa ttctcattgg catttggggt acaacactac tattttcatt tatttggtat
     2341 attcttgttg ctatttccaa ctacatcctc ttcaaaaaag caggctatgc tggttggaaa
     2401 tcattgattc caatctacaa tctctatatc caacaatgca tcgcctttgg ctatgaaaaa
     2461 agatggttca ttctattctt actgattcca ctagcaggac cattatatgg catctatctc
     2521 gtttacaatt ttggtcgtag ctttggttta tcagctgtac aagctatctt ctatgttctt
     2581 cttacaccta tctttaacct ctacatcgcc tttaatgatg gaagtcgtta ccaaggtcca
     2641 caagaattct ttattgatta atatacaatc aagcccccgc acacgcggag gcttttttaa
     2701 acgaatagaa aaataagaag aaccatcatg actaggctga ccaaaataga taaggagtta
     2761 acattggcag gttcagctga tcgactccct aactttaatg cataaattgg ggacatgact
     2821 gaaatcggag agactagaca gaccagcaac atgattttca tcgttttatc aataggtaga
     2881 agaaaataaa tgactcctgc tattagaata ttcgcaccca gcctcaaaga gagaagatag
     2941 gccaatcgac taatttcttg ccaattcaat tttaaatcaa gcaagattcc caacatgagc
     3001 atggctaaaa aaggattggc gttactggct atcgtcagcg catagataag ttcgcgtgga
     3061 agtttgatag agcagactgc taacgatagg ctaactagat agactactag tggaactgag
     3121 cgtgaaagat tctttataaa agttgcaacg gtcattcttt cctgctcttc atccacacca
     3181 gctgcgatac tgtaattccc acctagaacc atgattgcat tccccgcatc aaatacgatg
     3241 acgcttagta gactagatag cggaaaaaaa gcttgcacaa atgggagtgt aaaggttccg
     3301 atattatagc ctgataactg cataagaccg actgaagtct gttgactaga cttctttgct
     3361 tcccagtatc ccaccatatc caaaaaaaga ttacaaagaa tccctaatat gaagggaacg
     3421 tataaatcaa tagatacttg ggctgtcgct gaagctacaa ggagagaagc tggtagcgta
     3481 atattcatca ctaagctaga aaagattctt gcatcttccc ttcgaacaat ccctttgact
     3541 tttaatgtat aacctaaacc gataacaaag ataaaaccga gagcacgggc taataattca
     3601 agttca
//
LOCUS       DASGAC010000178         3593 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.180, whole genome shotgun sequence.
ACCESSION   DASGAC010000178 DASGAC010000000
VERSION     DASGAC010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3593
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.180"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..1104
                     /locus_tag="U1335_001920"
     CDS             <1..1104
                     /locus_tag="U1335_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEM5232371.1"
                     /translation="DNRNSSKKSILDTLEDLSSLVFDDIVDDKETGKYTTVINFETLL
                     LYTVSIIENISPQDVQLDDKKLLDVFTVSEKGRDWVIYFSETLLSIRHLFDNYVIRNA
                     SEDTTRRSKNDWFLSKGTYYEYQRDNRKNTDYFVEEHFENNTFPDKAVNDTIIMLQSM
                     FAVTFTSNRDSRWLYETLVYLFENVEHLQDEAFGHQFVLFLEALAVRYADDRLFTEDG
                     QKFRCYPNMPIYAFNFIDYVLWKNQNNLQEYFFDSRNFRFTYRRSVEHWYPQNPNFED
                     SGMLRMSDSLLHSFGNLCIITDSQNSKFGNSRPQAKYSQWEKIFGNQSLKLQWMAKLT
                     GNSDDNWNSEVIRGHEDKILTLVKEFFESTKNI"
     gene            1301..2578
                     /locus_tag="U1335_001921"
     CDS             1301..2578
                     /locus_tag="U1335_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HEM5232372.1"
                     /translation="MSTKANLLFDVHEKPAPLQGILLSFQHVFAMFGATILVPLILGM
                     PVSVALFASGVGTLIYQIATQFKVPVYLGSSFAYISSMALAIKEMGGDVSAAQTGILF
                     VGLIYVLTAALVKVIGTKWIDTLLPPIVIGPMIIVIGLGLANSAVTSAGFVADGDWRN
                     VVAAIATFLIAAFVNTKGKGFAKIVPFLIAIVGGYVIAIFLGLVDFTPVLEAAWFELP
                     GFYLPFETGAFKSYNFYFGPEMIAILPIAVVTVAEHIGDHTVLSQICGRQFLKDPGLS
                     RTLIGDGVATAVSAFIGGPANTTYGENTGVIGMTRIASVSVIRNAALIAIAFSFLGKF
                     TALISTIPSAVLGGMSILLYGVIASNGLKVLIESRVDFGQVRNLIIASSMLVLGLGGA
                     VLNIGAITLSGTALSAIVGIILNLILPKAEKAE"
     gene            2782..3051
                     /gene="rpsO"
                     /locus_tag="U1335_001922"
     CDS             2782..3051
                     /gene="rpsO"
                     /locus_tag="U1335_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001018251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEM5232373.1"
                     /translation="MAISKEKKNEIMAQYARHEGDTGSVEVQVAVLTWEINHLNDHIK
                     QHKKDHATYRGLMKKIGRRRNLLAYLRRTDVNRYRELIHSLGLRR"
BASE COUNT         1028 a          701 c          757 g         1107 t
ORIGIN      
        1 gataacagaa atagttcaaa aaaaagtata ttagataccc tagaagattt aagttcattg
       61 gtatttgatg acatcgtaga cgacaaagaa actggaaaat atacaaccgt tattaacttt
      121 gaaacactac tcttgtatac tgtttctatt attgaaaata tttccccaca agatgttcaa
      181 ttagatgata agaaactact tgatgtcttt acggtgagtg aaaaaggaag ggattgggtc
      241 atttacttct cggaaacttt attaagcatc agacacctat ttgataacta tgtcattaga
      301 aatgcaagcg aagatacaac aaggcggtca aaaaacgact ggtttcttag caaaggtact
      361 tactatgagt atcaaagaga caatcggaaa aatacagatt actttgtaga agaacatttc
      421 gagaataata cttttccaga taaggcagtg aatgatacca ttattatgct tcagtctatg
      481 tttgcagtga catttacatc aaatcgagat agtcgttggc tatatgagac tttggtctat
      541 ctctttgaga atgttgagca tctgcaagat gaagcatttg gacaccagtt tgtacttttt
      601 ctcgaagcgt tggcagttcg atatgctgat gaccgattat ttacagaaga tggtcaaaaa
      661 tttagatgct accctaatat gcctatctat gctttcaatt ttattgatta tgtcttatgg
      721 aaaaatcaaa ataatctaca ggagtacttt tttgattcaa ggaattttag attcacttat
      781 cgtcgttccg ttgaacattg gtatcctcag aatccaaatt ttgaagatag tgggatgtta
      841 agaatgtctg atagtctgct tcattctttc ggaaaccttt gtattatcac ggacagtcaa
      901 aattcgaagt ttgggaactc tagacctcag gccaagtata gccaatggga aaagatattt
      961 ggaaaccaaa gtctaaaact gcaatggatg gctaaactta ctggaaattc ggatgacaat
     1021 tggaatagtg aggtaatcag ggggcatgag gacaagattt taacgttagt taaggaattt
     1081 tttgaaagca cgaaaaacat ttgatttttt tcaaactttt agtatatatc agaaataaat
     1141 tccttgccaa aatccgaact tttgtgttac aataccaaaa gcgtaggttt ttaaactcat
     1201 cccgtgaggt gagaaagaca acaggataat tcattaaggg cctatgacta tgtatattta
     1261 gaaagtctgg gtctttttgt gtacccagaa tgggagattt atgagtacaa aagccaatct
     1321 tttgttcgat gtccatgaga aaccagcacc cttgcaaggg attttgttga gtttccagca
     1381 cgtgttcgct atgttcggag cgacaatctt ggtgccactg attctcggta tgccagtttc
     1441 ggttgccctc ttcgcatcag gtgtcggaac cttgatttac caaatagcga cccagtttaa
     1501 ggtgccggtt tacctaggct cttctttcgc ctacatctca tctatggctc ttgctatcaa
     1561 ggaaatgggt ggcgatgtgt cagctgctca gacaggtatt ctcttcgtcg gtttgattta
     1621 cgtgttgact gcggctctgg tcaaagttat cggtactaag tggattgata ccctcttgcc
     1681 accgattgtc atcggcccta tgattatcgt tatcggtctg ggtcttgcca attctgccgt
     1741 gacttcggca ggctttgtcg cagacggtga ctggagaaat gtcgtagcgg ctattgctac
     1801 cttcttgatt gctgcttttg tcaataccaa agggaaaggc ttcgccaaga ttgttccctt
     1861 cttgattgcc atcgtcggtg gttatgtgat tgctatcttc ctcggactag ttgactttac
     1921 acctgttctg gaagcggctt ggtttgaatt accaggtttc tacctaccat ttgaaactgg
     1981 tgccttcaag tcgtacaatt tctacttcgg tccagaaatg attgctatct tgccaattgc
     2041 tgttgtaaca gtagctgagc atatcgggga ccacaccgtt ctcagccaaa tctgcggccg
     2101 ccagttcttg aaagatccag gtctcagccg taccttgatt ggtgacggtg tggcgactgc
     2161 cgtatcagcc tttatcggtg gacctgctaa cacgacttac ggtgaaaaca ctggggttat
     2221 cggtatgacc cgtatcgcat cagtatccgt tatccgtaac gctgctctga ttgccattgc
     2281 cttctcattc ttgggtaaat ttacagccct tatctcaact attccaagtg ctgttcttgg
     2341 tggtatgtct atcttgcttt acggtgttat cgcctcaaac ggtttgaaag ttttgattga
     2401 gagccgtgtt gattttggtc aagtccgcaa cctgattatc gcaagctcta tgcttgtttt
     2461 aggcctcggt ggagcagttc tcaacatcgg tgccatcacc ctctcaggaa cagccctctc
     2521 agccattgta ggtattatcc tcaatcttat cttgccaaaa gcggaaaagg cagagtaaat
     2581 gtgatataca agcagaaagt cagcaaaagc tggctttttt tgaaaatagc agagctactc
     2641 agctagtttt caaatcagtt gacaaaaaag acaatccttg atagaataaa tgaggtccaa
     2701 aaggacaaat ctagcttttt cttggttaca ggtcgccaac ctgtcactcg gattaggctc
     2761 aaaaacaaag gagaacatat catggcaatc tcaaaagaga aaaaaaatga aatcatggca
     2821 caatatgctc gtcatgaagg cgacacaggt tcagttgaag ttcaagtagc agtacttact
     2881 tgggaaatca accaccttaa cgaccacatc aaacaacaca aaaaagacca cgcaacttac
     2941 cgtggtttga tgaaaaaaat cggtcgccgt cgtaacttgt tggcatacct acgccgcaca
     3001 gatgttaacc gttaccgtga attgattcac tcactcggac tccgtcgtta agataggata
     3061 caaaagccgt caaaaacgac tgaaaaatag gaaactgcca tgtctttgga cattggcagt
     3121 ttctcttttt tccgagtttt taggctgtgt tcgactgctc aagatacgga ggcgtgagaa
     3181 gcacagcgaa attaggaaat ttttgcaaca agtttacttg tcaaaaattt atctatttcg
     3241 cacagcttct agccgaagtt caattcagaa agagcctgtt tttcaggttc ttttttgttt
     3301 ttccattctc ttttttccga gtttttaggc tgtgttcgac taatcaagat gttagagcgt
     3361 taagaaagtc cagcaaaaat aggaattcat cgcagtgtgc tttagcatac aagctgaatg
     3421 ccagactttt agctcgctcc aacagtctgt tggaggctgc aaatgaaacg aactagttcg
     3481 tttcaacaat tcagatagaa cctgatttca ggttcttttt gtttgtctta ttcaagcgca
     3541 atatgaatct ttgatagtgg atagagattt tgggctaaaa gtccatgttt tcg
//
LOCUS       DASGAC010000179         3592 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.181, whole genome shotgun sequence.
ACCESSION   DASGAC010000179 DASGAC010000000
VERSION     DASGAC010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3592
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.181"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..1103
                     /locus_tag="U1335_001923"
     CDS             <1..1103
                     /locus_tag="U1335_001923"
                     /inference="COORDINATES: protein
                     motif:HMM:NF019202.1,HMM:TIGR01167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1542 domain-containing protein"
                     /protein_id="HEM5232374.1"
                     /translation="DAINTTTSAEKAAAKKDLEAAYNAKKVEIENSALTAEEKAAKQA
                     ELDQAKSIANSAIDAATYNASVAKALEDGKSAIDAINTTTSAEKAAAKKDLEDAYNAK
                     KAEIENSALTADEKAAKQAELDKAKADADKAIDAATDASGVAKALEDGKATIDAINTT
                     TSAEKAAAKKDLEDAYNAKKEENAKSSLTAEEKAAKQAELDKAKADADKAIDAATDNA
                     GVAKALEDGKAAIDAINTTTSAEKAAAKKDLEAAYNAKKVEIENSALTAEEKAAKQAE
                     LDQVKSVADSAIDAATDASGVAKALEAGKAAIDAINTSTSAGIDTSTSAKKAHKENKV
                     LPKTGDNVGLSSVLGIAGLALLGTAIRKKRED"
     gene            1261..2397
                     /locus_tag="U1335_001924"
     CDS             1261..2397
                     /locus_tag="U1335_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEM5232375.1"
                     /translation="MKKRPTSAYIHIPFCTQICYYCDFSKVFIKNQPVDDYLAALMEE
                     VKFYDLPALRTLYIGGGTPSALSADQLDYLLTNLEELLDLSQLEEFTIEANPGDLTAD
                     KIAVLKKSKCNRVSLGVQTFDDRMLKKIGRSHNQTQIYETIAALKEAGFHNISIDLIY
                     ALPGQTMEQVVDNVAKALELNIPHMSLYSLILENHTVFMNRQRRGNLHLPNEDVESDM
                     FDYILQELEKNGFEHYEISNFTKPGFESRHNLMYWDNSEYYGLGAGASGYIDGMRYRN
                     RGPIQHYLKSIREKGHSRLHEEFLSKTEQMEEEMFLGLRKKTGVSIERFEEKFGISFE
                     DRYGQVVRDLKIEGLLQEEDRWLRMTKKGLFLGDTVAERFIITD"
     gene            2413..3153
                     /locus_tag="U1335_001925"
     CDS             2413..3153
                     /locus_tag="U1335_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[acyl-carrier-protein] thioesterase"
                     /protein_id="HEM5232376.1"
                     /translation="MGLTYQEEFTIPFDMVDVKQEIKLPDFISYCLGVSGRQSEELGR
                     SDLYIFQEFGLIWVVTDYELTIQGLPKYNETITIKTEAVAYNKFFCHRMFYIYDEAGN
                     LLLDILCYFVLIDFETRKVAPVPEALIAPYQSEQVKKLPRAPKYQLLENPSVQEFPVR
                     YFDLDMNGHVNNGKYLEWMYEALGYDFLLCHVPKKIQLKYLKEVEATSLVSSRMVEKA
                     GVSRHEIVVDGHIHAQAVIEWRERHVAG"
     gene            3140..3281
                     /locus_tag="U1335_001926"
                     /pseudo
     CDS             3140..3281
                     /locus_tag="U1335_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647054.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase N-terminal domain-containing
                     protein"
     gene            3396..>3592
                     /locus_tag="U1335_001927"
     CDS             3396..>3592
                     /locus_tag="U1335_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HEM5232377.1"
                     /translation="MLDQIKAHLLDSINNIVSSANPFVLHPEKDFSRQSQLTMKTMIQ
                     AILTMGGNTLAKELLDLDLPVS"
BASE COUNT         1142 a          731 c          835 g          884 t
ORIGIN      
        1 ttgacgcaat caatacaact acaagtgctg agaaagcagc cgctaagaaa gacttagaag
       61 cagcttacaa cgctaagaaa gtagaaattg aaaattctgc ccttacagct gaagaaaaag
      121 cagcgaaaca ggcagaacta gaccaagcca aatcaatagc aaacagcgca attgatgcag
      181 caacatataa tgcaagtgta gctaaagctc ttgaagatgg taaatcagcg attgatgcaa
      241 tcaatacaac tacaagtgct gagaaagcag ctgctaagaa agacttagaa gatgcttata
      301 acgctaagaa agcagaaatt gaaaattctg cccttacagc tgacgaaaaa gcagcgaaac
      361 aagcagaatt ggataaagct aaagcagatg cagataaggc tattgatgca gcgacagatg
      421 cttcaggtgt agctaaagct cttgaagatg gtaaggcgac gattgacgca atcaatacaa
      481 ctacaagtgc tgagaaagca gctgctaaga aagacttaga agatgcttat aacgctaaga
      541 aagaagagaa tgctaagtca tccttgactg cagaagaaaa agcagcgaaa caagcagaac
      601 tagataaagc taaagcagat gcagataaag caattgatgc agcaacagat aatgcaggtg
      661 tagctaaagc tcttgaagat ggtaaagcag cgattgacgc aatcaataca actacaagtg
      721 ctgagaaagc agccgctaag aaagacctag aagcagctta caacgctaag aaagtagaaa
      781 ttgaaaattc tgcccttaca gctgaagaaa aagcagcgaa acaggcagaa ctagaccaag
      841 tcaaatccgt agcagacagc gcaattgatg cagcgacaga tgcttcaggt gtagctaaag
      901 ctcttgaagc tggtaaagca gcgattgacg caatcaatac aagcacaagt gctggaatcg
      961 acacaagcac aagtgctaag aaggcgcata aggaaaataa ggttcttcct aagactggag
     1021 ataatgttgg tttatcaagc gtcttgggca tagcaggttt agctttgttg gggacagcaa
     1081 ttcgtaaaaa aagagaagat taactatttt cttaaggctc tttgtcaact gtagtgggta
     1141 gacgaaaagc taacacctag agaggacgaa attcgttctc tctttcttca tgcgtacggc
     1201 gtgacgagcc cttgttattg ggcggttaca aaagtctaac agtgtgctat aatagttggt
     1261 atgaaaaaac gaccgacatc tgcctatatc cacattccat tttgtaccca gatttgttac
     1321 tactgtgatt tttccaaggt ctttatcaag aaccagcctg ttgatgacta tctggcagcc
     1381 ctcatggaag aggtcaagtt ttacgacctg ccagccctcc gcacactcta tattggaggt
     1441 ggaacaccgt cggctctctc ggcagaccag ctagattatc tcctgaccaa tctggaggaa
     1501 ctattggact tgtcgcaact ggaagaattc accatagagg ctaatccagg tgacttgacg
     1561 gcagacaaga ttgcagtact aaaaaaatcc aagtgcaatc gggtgtcgct gggtgtccag
     1621 acctttgatg atcggatgct gaaaaaaatc ggtcgtagcc acaaccaaac ccagatttat
     1681 gaaaccattg ctgccctcaa ggaagcgggt ttccacaata tttccattga cctgatttat
     1741 gccctgcctg gtcagactat ggaacaggtg gtcgataatg tcgccaaggc tttggagctg
     1801 aatattccac acatgagcct ttatagcttg attttggaaa accacacggt cttcatgaac
     1861 cgccaacgcc gtggcaacct ccatctgccc aacgaagatg tggagtcgga tatgttcgac
     1921 tacattctgc aagagttgga gaaaaacggc tttgagcact acgaaatctc caattttacc
     1981 aagcctggct ttgaaagccg ccacaacctc atgtactggg acaactccga gtattacggc
     2041 ttgggagctg gagcctcagg ctacatcgac ggcatgcgct accgcaatcg cggccccatt
     2101 cagcactacc tcaagtccat ccgcgaaaaa ggccattctc gcttacacga agaattcctc
     2161 agtaagaccg agcagatgga agaagagatg tttttaggtc tacggaaaaa aactggcgtg
     2221 tccatcgagc gattcgagga aaagtttggc atttcctttg aagaccgcta cggtcaggtg
     2281 gtcagagact tgaaaattga aggtctcttg caagaagaag accgttggct tcggatgacc
     2341 aaaaaaggat tgtttcttgg cgatacagtt gctgaacgat ttattattac agattagaaa
     2401 agagcaaaaa cgatgggctt aacctaccaa gaagaattca ccattccctt tgatatggtg
     2461 gatgttaaac aagaaattaa actacctgac tttatttcct actgtctcgg tgtgtcaggt
     2521 cggcagtcgg aagaactagg tcgcagtgac ctctatattt ttcaggaatt tggcttgatt
     2581 tgggtggtga cagattatga actaaccatt caaggtttac ctaagtacaa tgaaaccatc
     2641 acgataaaaa cagaagcggt tgcctacaac aagtttttct gtcatcggat gttctacatc
     2701 tacgatgagg caggcaatct cttgctggat attctctgct attttgtcct gattgatttt
     2761 gaaactcgca aggttgctcc agtaccggaa gccttgattg ctccctatca gtctgagcag
     2821 gtcaagaaat tacctcgggc tcccaagtat cagctcttgg aaaatccatc tgtccaagaa
     2881 tttcctgttc gctattttga cttggatatg aatggccatg ttaataatgg caagtacttg
     2941 gaatggatgt atgaagcact aggttatgat tttctgctct gccatgtccc taaaaaaatc
     3001 caactcaagt atctcaagga agtagaggca actagcttgg tgagttcacg catggtggaa
     3061 aaagctggtg tcagccgcca tgagattgtg gtagatgggc atatccatgc gcaagctgtc
     3121 atagaatgga gggagcgtca tgtcgcagga taagtggttg gaatgggccg tacgtttaca
     3181 agccttggct cagactggtt tgtaaagatg tctatgatat ggagcgtttc gaagaaatca
     3241 gacagattgc gacggaaatg ttgatagagc tgtctgggca gcttgataaa gaaataaggg
     3301 gcagtgcgcc caatgtcatt aagttaacta acctatcacg ttttgtggta ggttagtttt
     3361 ttctatggta cactaaaaat aaaaggggaa aagtcatgct agatcagatt aaagctcatt
     3421 tacttgatag tattaacaac atcgtttcta gtgccaatcc gtttgtgctt catcctgaaa
     3481 aagattttag tcggcaaagt cagctaacga tgaaaaccat gattcaagcc atactgacca
     3541 tgggtggtaa taccttagcc aaagagctac ttgatttaga tttgcctgtc tc
//
LOCUS       DASGAC010000180         3579 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.182, whole genome shotgun sequence.
ACCESSION   DASGAC010000180 DASGAC010000000
VERSION     DASGAC010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3579)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3579)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3579
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.182"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            162..1424
                     /gene="purD"
                     /locus_tag="U1335_001928"
     CDS             162..1424
                     /gene="purD"
                     /locus_tag="U1335_001928"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011226734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEM5232378.1"
                     /translation="MKLLVVGSGGREHAIAKKLLESEQVEQVFVASGNDGMTLDGIKL
                     VNFGISEHSALINFAKENDVAWTFVGPDDALAAGMVDDFEEAGLKAFGPSRLAAELEW
                     SKDFAKQIMVKYGIPTAAFGTFSNFEEAKAYIEEQGAPIVVKADGLALGKGVVVAETV
                     EQAVEAAREMLLDNKFGDSGGRVVIEEFLAGEEFSLFALVNGDQFYILPTAQDHKRAF
                     DGDQGPNTGGMGAYAPVPHLSQSVVDTAVDTIVKPILAGMIAEGRPYLGVLYAGLILT
                     DQGPKVIEFNARFGDPETQIILPRLTSDFAQNIDDILHKRPTQLTWLDSGVTLGVVVA
                     SNGYPLDYEKGVTLPAKTEGDITTYYAGARFAENSRALLSNGGRVYMLVTTADTVQDA
                     QEKIYSELKNQDTTGLFYRTDIGSKAVK"
     gene            1450..1938
                     /gene="purE"
                     /locus_tag="U1335_001929"
     CDS             1450..1938
                     /gene="purE"
                     /locus_tag="U1335_001929"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEM5232379.1"
                     /translation="MNIPISIIMGSSSDWKTMKKAADVLDKFGVAYEKKVVSAHRTPD
                     LMFRHAEEARGRGIKVIIAGAGGAAHLPGMVAAKTTLPVIGVPVQSRALSGVDSLYSI
                     VQMPGGVPVATMAIGEAGATNAALTALRILSIKDQTIAAQLADFAKEQEKIAEAMTDD
                     LI"
     gene            1925..2992
                     /gene="purK"
                     /locus_tag="U1335_001930"
     CDS             1925..2992
                     /gene="purK"
                     /locus_tag="U1335_001930"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HEM5232380.1"
                     /translation="MTSSKTIGIIGGGQLGQMMAISAIYMGHKVITLDPAADCPASKV
                     SEVIVAPYHDVAALKQLAERCHVLTYEFENVDADGLDAVIKDGQLPQGTDLLRISQNR
                     IFEKDFLAKKAGVQVAPYKVVTSSLDLEGLDLSKNYVLKTATGGYDGHGQKVIREEAD
                     LVEASQLANTAECVLEEFVNFDLEISVLVSGNGSDYTVFPVQENIHRNNILYKTIVPA
                     RISDELAEKAKTMALQIADKLQLAGTLCVEMFVAGQDILVNEIAPRPHNSGHYSIEAC
                     DFSQFDTHIRGILGQPLPPIRLLSPAVMINVLGQDMEAVQTFLQENPTAHHHFYGKLE
                     AKHNRKMGHVTVLGEDVNSER"
     gene            3043..3558
                     /locus_tag="U1335_001931"
     CDS             3043..3558
                     /locus_tag="U1335_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018377748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232381.1"
                     /translation="MRKYLKLLITKNDLLSLVIIIIALILSLLGSSTIFDKNIDLNSQ
                     HAFFIYATVATLSSAILDPVFEILKVESRKKKLFSITLGIAISLTIWVISFINNSIFQ
                     YIQSISKRGGFSAVSLSLLLLNLVYINYQLQTEQENKNRQDKEKILRLLKENEEFRKK
                     HSDRRGDKNGE"
BASE COUNT          979 a          807 c          862 g          931 t
ORIGIN      
        1 tacaacgaac catgattttt aatcttaaca agagtatcta tatgattttg ctcacctcgt
       61 gtgagctttt tccattcccg aacattaccc ggctttttct atcaaaatct gtctgttttt
      121 gctatactgt ttatataaaa tccgtttttg aggtgtaaaa aatgaaactt ttggtcgttg
      181 ggtctggtgg tcgtgaacat gctatcgcaa agaaattgct agagtctgag caggtagaac
      241 aggtctttgt tgcttctgga aatgacggaa tgaccttgga tggtatcaag ttagtcaatt
      301 tcggaatttc cgaacattct gccctgatca actttgctaa ggaaaatgac gtagcttgga
      361 cttttgtggg tccagacgat gctctggcag caggtatggt tgatgatttt gaagaggcgg
      421 gactaaaagc ttttggccct agtcgtctag ctgcggagct ggagtggtca aaagactttg
      481 ccaaacaaat catggtcaaa tacggcattc caacagcagc ctttggcaca ttttccaact
      541 tcgaagaagc caaagcctac atcgaagagc agggagcacc catcgtggtc aaggcagacg
      601 gcttggcact aggcaagggc gtggtcgtgg cggaaaccgt cgagcaggca gtcgaagcgg
      661 ctcgggagat gctcttggac aacaagttcg gcgactcggg tggccgcgtg gtcatcgagg
      721 agttcttggc gggcgaggag ttctcccttt ttgctctagt caacggtgac cagttctaca
      781 ttctgccgac agcccaggac cacaagcgtg cctttgacgg cgaccagggt ccaaatacag
      841 gcggtatggg tgcctacgct ccagtgcctc acctatctca aagtgtggtg gacacagcag
      901 ttgacaccat tgtcaagcct attcttgcgg gcatgattgc tgaagggcga ccttatcttg
      961 gcgtgctcta tgctggcttg attctgaccg accaaggtcc caaggtcatc gagttcaacg
     1021 cccgttttgg cgacccagaa acccagatta tccttcctcg cctgacctct gactttgctc
     1081 agaacatcga tgacatcctc cacaaacgcc cgacacagct gacttggctg gatagtggcg
     1141 tgacactggg tgttgtcgtg gcatcaaacg gctatccttt ggactacgaa aaaggcgtga
     1201 ccttgccagc gaagactgag ggcgacatca cgacctacta tgcaggggct cgttttgcgg
     1261 aaaatagcag agcactgctc tcaaacggcg gtcgggtcta tatgttggtc accacagcag
     1321 ataccgtcca agatgcccag gaaaaaattt actcggagct gaaaaatcag gatacgacag
     1381 gcctctttta tcggacagat attggaagta aggccgtgaa ataagggaca aagaaaagga
     1441 aagacaagca tgaacattcc aatttccatc atcatggggt ctagttctga ctggaaaacc
     1501 atgaaaaaag cagccgatgt gctggacaaa tttggcgtag cctatgaaaa gaaagtagtc
     1561 tctgcccacc gcacgccaga cctcatgttt cgtcatgccg aggaagcgcg tggccgtggc
     1621 atcaaggtca tcatcgcagg agcgggcggt gcagctcatt tgccaggtat ggtagcagct
     1681 aagacaaccc tgcctgtcat tggcgtccct gtccaatccc gtgcccttag cggtgtggat
     1741 tcgctctatt ctatcgtgca gatgccgggc ggcgtgcctg ttgcgactat ggcaatcggc
     1801 gaagcgggtg ccaccaatgc agccttgacc gctcttcgta ttctctctat taaagaccaa
     1861 accattgcag ctcagctggc agactttgcc aaggaacagg aaaaaattgc ggaggcgatg
     1921 acagatgacc tcatctaaaa caatcggaat tatcggaggc ggtcagctgg gtcagatgat
     1981 ggctatttcc gctatttaca tggggcacaa ggtgatcacg ctggatcctg cggcggactg
     2041 cccagcctcc aaggttagcg aggtcatcgt cgctccctat cacgatgtgg cggccctcaa
     2101 acagttggcg gagcggtgcc atgtcctgac ctacgagttt gaaaatgtcg atgccgacgg
     2161 actggacgcg gtcatcaagg acggtcagct ccctcaaggc acagacctcc tccgcatttc
     2221 ccagaatcgt atttttgaga aggatttttt ggcaaaaaaa gctggcgtgc aagtcgcccc
     2281 ctacaaagtc gtcacctcta gcctagacct agaaggatta gacctcagca aaaactacgt
     2341 tttgaagaca gccactgggg gctatgatgg acatggtcag aaggttattc gagaagaggc
     2401 ggacttggta gaggctagtc agttagcaaa tactgctgag tgtgtcttgg aagagtttgt
     2461 gaattttgac ctggaaatct ccgtccttgt gtctggcaat ggatccgact acaccgtctt
     2521 tcctgtgcag gaaaatatcc accgcaataa tattctttat aagaccattg tgcctgcccg
     2581 tatttcagat gaactagctg aaaaagccaa aactatggcc ctgcaaatcg cagacaagct
     2641 tcaattagca ggcaccctct gcgttgaaat gtttgtagca gggcaggata ttctggttaa
     2701 cgaaatcgct cctcgaccac ataattcagg gcattattct attgaagctt gtgatttttc
     2761 acagtttgat actcatattc gaggtattct cggtcagccc ctgcccccta tccgcctgct
     2821 ctctccagcc gtcatgatta acgttcttgg acaagacatg gaagcagttc aaacctttct
     2881 tcaagaaaac cctaccgccc atcaccactt ttatggtaaa ctagaagcaa agcacaaccg
     2941 caaaatggga cacgtgacgg tgttgggaga ggatgtaaat agcgaacgtt agttttatca
     3001 gggcattctg ctttattgaa acaaatacga gaggaggatg agatgaggaa gtatcttaaa
     3061 ttattgataa caaaaaatga tttattaagt cttgttataa ttattattgc tttaatttta
     3121 tctttactag gttcatctac catttttgat aagaatattg acttgaactc tcaacatgct
     3181 tttttcatat acgccacagt agccacatta tcatctgcta ttctagatcc tgtttttgaa
     3241 attcttaaag tagagagtag gaagaaaaaa ctattctcta taacactagg tatagcaatc
     3301 agtcttacta tttgggtgat tagcttcatc aataactcta tatttcaata tattcaatct
     3361 atttccaaaa gaggaggatt ttcagcagtc tcactttcgc ttttattgtt aaatcttgtt
     3421 tatataaatt accagctaca aacggaacaa gaaaataaaa ataggcaaga taaagaaaag
     3481 atactgcgac tcttgaaaga gaatgaagaa tttaggaaga aacatagtga cagaagaggc
     3541 gataagaatg gtgaataaat taaaattaag attgtctgc
//
LOCUS       DASGAC010000181         3575 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.183, whole genome shotgun sequence.
ACCESSION   DASGAC010000181 DASGAC010000000
VERSION     DASGAC010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3575
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.183"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(118..3066)
                     /locus_tag="U1335_001932"
     CDS             complement(118..3066)
                     /locus_tag="U1335_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018165262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEM5232382.1"
                     /translation="MEDELIRHLTSGESQWVYRPELNSEELLWSNFFAKLEANNVRHL
                     ADHPLTDQEKHQIKNQLNFVNFYEAAKWLAGENGIAKVQVQREDASLGTIRLEVIWRH
                     NVAGGKSSYEVVNQVVTGGDAARQRRGDVTLLINGLPMIQIELKSRSHPYMDAFRQIR
                     KYEQEGQFKGIFSSIQMFVVSNITETRYIAAAKETKLNDRFLTKWVDKHNQAQPHLFD
                     FAREVLSIPMAHQLVMQYSVIDDDKKALILLRPYQIHAIEAIREASRLRQSGYIWHTT
                     GSGKTLTSYKVARNLLQIPSIEKTIFVIDRTDLDQQTTAAFLSYAENDMIDIDQTDDT
                     QHLLKNLSSEDRRVVVTTIQKLNTLLRQFEEGLHEKFHQRVKNLNLAFVVDECHRAVT
                     PERQRILEQFFVNSLWYGFTGTPIFKENKREQKGDLAQTTEEQYGPCLHEYTVKEAIH
                     DRAVLGFQVEYQTTMPGWAEDEIEDEFYDDERHMLTVLDAILNKSKRKLGFQNGVGKT
                     YEGLLTVKSIARAQAYYDLIQEVKAGQKSLTISESVKKVLPDFPKVAITYSVTENDES
                     SFANQDYMSKSLEDYNAMFGTHFTLATLGSYNTDLNERLARKKDKYAFREEQLDLVIV
                     VDRLLTGFDAPCLSTIFMDRQPMKPQHIIQAFSRTNRLFDEGKKFGQVVSFQTPNKFK
                     EKVDEALSLYSNGGEFAVLAPTWLEEKAKFKEKVQQLLAIAPNPEMVPDLDASSDAEL
                     KRFAKAFQEFDKLFASVQVYADYEQEDMLKEIGLSLEDIENFSGQYQNVIEELRRRRK
                     DDEGIEDTTFDIEYELESVRTDEINYHYIISLIQNLIDSKNQVIPDKEKKMVDNYIAD
                     LDKTNPKLSQLISKIWQEAQTNTQDYKGQSIAHKLDEMIDLTIREQVVSTARDWCVGE
                     DELQFIVDNYRVGKDKQIGEKALVDTYDYTSYKENKGDQALNKLKYKKALKEDYMNMI
                     AEEILPLRGR"
BASE COUNT          845 a          803 c          851 g         1076 t
ORIGIN      
        1 tgaaataact ataaaatttt gatttctatt ttgacaaaat ggcagttttg agcagataga
       61 aaataaatct cagggtctat tttgacaaat tgaggatttt gtcaaaatac acctacacta
      121 cctccccctc aatggtagga tttcttccgc aatcatgttc atatagtcct ctttgagggc
      181 ttttttgtat ttgagcttgt tgagggcttg gtcgcccttg ttttccttgt agcttgtata
      241 atcgtaggta tcgaccaggg ctttttcgcc gatttgcttg tccttgccga ctcggtagtt
      301 gtccacgata aactgaagtt cgtcttcgcc aacacaccaa tctcgtgctg tggatacgac
      361 ttgctcacgg atggttaggt caatcatctc gtctagtttg tgggcgatgg attggccctt
      421 gtaatcttga gtattggtct gggcttcctg ccagattttg gagatgagtt gggagagttt
      481 gggattggtc ttgtccaagt cggcgatgta gttgtctacc atctttttct ctttatcagg
      541 aatgacttga tttttactgt caatcaggtt ttggatgaga gagatgatat agtggtagtt
      601 gatttcatcc gtacggacag attccagctc gtattcaata tcaaaagtcg tatcttctat
      661 gccctcgtca tccttccgcc gtctgcggag ttcttcgatg acattttggt attgtccaga
      721 aaaattctca atatcctcca gactaagccc gatttccttg agcatgtcct cttgctcgta
      781 gtcggcatag acctgtacgg aggcaaagag cttgtcaaat tcctgaaagg ccttggcaaa
      841 gcgtttcaac tcggcatcac tgctggcatc caggtctggc accatttcag gatttggggc
      901 aatagccagc aactgctgaa ctttttcctt gaacttggct ttttcttcca accaagtcgg
      961 tgccagcacc gcaaactcac caccatttga gtagagactg agagcctcgt caaccttttc
     1021 cttgaattta ttgggtgttt gaaatgaaac tacttgtcca aacttcttgc cctcgtcaaa
     1081 gagacgattg gtccgtgaaa aggcttggat gatgtgctgg ggtttcatag gctgcctgtc
     1141 catgaaaatg gtagacaagc acggagcatc aaatcccgtc agcaagcgat ccactacaat
     1201 aaccaagtcc aactgctcct cacggaaggc atacttgtct tttttccgag ccaagcgttc
     1261 gttgaggtca gtattatagg aaccaagggt cgccagagtg aaatgcgtac caaacatggc
     1321 attgtaatcc tccaagctct tgctcatgta gtcttgatta gcaaaggaag attcgtcgtt
     1381 ctcagtcact gagtaggtga tagcgacttt tggaaagtct ggtaaaacct ttttgacaga
     1441 ctcggaaatg gtcaggctct tctgtcctgc cttgacttct tgaatcaggt catagtaagc
     1501 ttgagcacga gcgatggact tgacagtcag taggccctcg taggttttcc ctacaccgtt
     1561 ttggaaaccg agtttgcgtt tggatttgtt taaaatagca tccaaaaccg tcagcatgtg
     1621 cctttcatcg tcgtaaaact cgtcttcgat ttcatcttcc gcccagccag gcatggtggt
     1681 ctggtattcc acttggaaac caagaacagc tcggtcatgg atggcttctt tgactgtgta
     1741 ttcatggaga catggcccat actgttcttc tgtcgtctgg gctaaatcgc ctttttgctc
     1801 ccgcttgttc tccttgaaaa taggagtacc tgtaaagcca taccagagtg agttgacaaa
     1861 aaattgttcc aaaatccgct ggcgttctgg ggtgacagcc cggtggcatt cgtccacaac
     1921 aaaggctaga tttaggttct taacacgttg gtggaatttc tcatgaagcc cctcttcaaa
     1981 ttgacgcagg agggtattga gtttttgaat agtggtgacg acgacacggc ggtcttctga
     2041 agacagattt ttcaacaagt gctgggtatc gtccgtctgg tcaatatcta tcatgtcatt
     2101 ttccgcatag gacagaaagg cagcggtggt ctgctggtca aggtcagtcc tatcaatgac
     2161 aaaaatggtc ttctcaatgg atgggatttg caggagattg cgtgccacct tgtaggatgt
     2221 cagggtctta cctgaaccag tcgtgtgcca gatatagcct gactgacgaa gacgactggc
     2281 ttctcggatg gcttctatgg catggatttg atagggacga agcaggataa gggctttttt
     2341 atcgtcgtcg ataacgctat attgcatgac caactgatga gccataggga tggaaaggac
     2401 ctctctggca aagtcaaaga gatggggctg ggcttgattg tgcttatcca cccacttggt
     2461 caagaagcgg tcgttgagtt tagtttcctt agcagcagcg atgtagcggg tttccgtgat
     2521 gttagacact acaaacattt gtatactcga aaagataccc ttaaactgac cctcttgctc
     2581 gtatttgcga atctgacgga aggcatccat atagggatgg gaacggctct tgagctcaat
     2641 ctgaatcatg ggaaggccgt ttatcaagag ggtcacatca ccccgtcttt gtctggcagc
     2701 atcaccacct gtcacaactt ggttgacaac ctcataactg gacttgcccc ctgcgacatt
     2761 gtgtcgccag atgacctcta gtcggatggt gcccagactg gcatcttccc gctggacttg
     2821 gaccttggca ataccattct cacctgccag ccacttggct gcttcgtaga aattgacaaa
     2881 gttgagttgg ttcttgattt ggtgtttttc ttggtctgtt aggggatggt cagctaaatg
     2941 gcggacgtta ttagcctcta gcttggcgaa aaagttggac caaaggagtt cttcactatt
     3001 gagttcagga cggtagaccc actgactctc tccgctggtc agatggcgga tgagttcgtc
     3061 ttccatctgc acttcattgg ctggcttttt agtctgataa acagcttgag gctcaaccaa
     3121 ttcccgctga ccaggcaaca agcgtaagct aacttgaaaa tctttcaaat cctcttcatt
     3181 gaccttttgc aagagtttgt ggagatgttt gcggaaaccg attaactgac cgtgggcatc
     3241 tgctaatttc tgctcggctt gggcatagtg gtcaggctta cgcttgatgt ccagatagcc
     3301 tttgacaata tcggtcaagc gggcttgttc cacttggtaa acagcctcca actctaaggc
     3361 attgtcctgt ctttctagtt tttcaagcaa gcctgcttgg tattcctcta tggctctcat
     3421 ttcttccaag agttctggtg catagactgg tatgtctagc ataagttgtt tccaagtcat
     3481 ctagacacca gcctttcgac aacgcaaaaa gcctgccaag actggcaggt ttcttttact
     3541 atagaattga gtaagagttt tagattgctt tgata
//
LOCUS       DASGAC010000182         3569 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.184, whole genome shotgun sequence.
ACCESSION   DASGAC010000182 DASGAC010000000
VERSION     DASGAC010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3569)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3569)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3569
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.184"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            28..2295
                     /locus_tag="U1335_001933"
     CDS             28..2295
                     /locus_tag="U1335_001933"
                     /EC_number="3.4.14.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidyl-peptidase"
                     /protein_id="HEM5232383.1"
                     /translation="MRFNQFSFIKKETSVYLQELDALGFQLIPNASSKTNLETFVRKC
                     HFLTANTDFALSNMIADWDTDLLTFFQSDRELTDLIFYQVAFQLLGFVPGVDYTDVVD
                     FVEKSNFPVIYGDMIDNLYQLLATRTKSGNTLIDQLVSDDLIPEDNRYHFFNGKSLAT
                     FSTKKLIREVVYVETPVDTAGTGQTDIVKLSILRPHFDGKIPAVITNSPYHQGVNEVA
                     SDKALHKMEGELAEKPAGTIEVKQTSITKLDLDQRELPVSPATEKLGHITSYSLNDYF
                     LARGFASLHVSGVGTLGSTGYMTSGDYQQVEGYKAVIDWLNGRTKAYTDHTRSIEVKA
                     DWANGKVATTGLSYLGTMSNALATTGVDGLEVVIAEAGISSWYDYYRENGLVTSPGGY
                     PGEDLDSLTALTYSKSLQAGDFLRNKAAYEKGLAAERAALDRISGDYNQYWQDRNYLL
                     HTDKVKCEVVFTHGSQDWNVKPIHVWNMFHALPSHIKKHLFFHNGAHVYMNNWQSIDF
                     RESMNALLSQKLLGYENNYQLPTVIWQDNSGEQTWTTLDTFGGENETVLPLGTGNQTI
                     ANQYAQEDFDRYGKSYPAFHQDLYAGKANQVSIELPVTEDLLLNGQVTLKLRVASSVA
                     KGLLSAQLLDKGNKKRLAPIPAPKARLSLDNGRYHAQENLLELPYVDMPQRLVTKGFM
                     NLQNRTDLMTVEEVVPDQWMDVSWKLQPTIYQLKKGDVLELILYTTDFECTVRDNNNW
                     TISLDLEQSSLHLPY"
     gene            complement(2335..3501)
                     /locus_tag="U1335_001934"
     CDS             complement(2335..3501)
                     /locus_tag="U1335_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEM5232384.1"
                     /translation="MFRLAKEELEKLGAIITATEIYQQPGLWKEAHQLYLDQLEKIED
                     FLTAIKDKHDFVHVVFTGAGTSDFVGQSIANYLNQVNDLKHIRFSAIGTVELVSRPHD
                     YLQADVPTVLVSFARSGNSPESVAAVEVAKQLVYQLYQVTITCAPEGKLALAAEGDAD
                     NLLLLQPAGSNDKGFAMTGSYSCMALTALLVFSPASQEEKAAWVETIARLGQDVLDRE
                     DYVQDLINLDFERVIYLGSGGFYGLAHEAQLKILELTAGKIATMYESPLGFRHGPKSF
                     INEKTLIFLFASNDAYTRQYDVDLLNEVHGDGIAERIVALSADKLVGTEAANFVLAEG
                     GADLPDVFLTFPYILFAQTVSIMAAIKCNNLPDTPSPTGTVNRVVQGVIIHPLP"
BASE COUNT          965 a          901 c          818 g          885 t
ORIGIN      
        1 ctattatcct aaaaaagagg agaatttatg cgctttaatc aattttcttt tataaaaaaa
       61 gagacctccg tctacttgca agagcttgat gctctaggat ttcaactgat tcctaatgca
      121 agtagtaaga caaatttaga aacctttgtc agaaagtgcc atttcctgac agcaaatacc
      181 gactttgccc tgtccaacat gattgcggac tgggatacag acctgctgac cttcttccag
      241 tctgaccgtg agctgacaga cctgattttc tatcaagtcg cctttcagtt gctaggtttt
      301 gtgcctggtg tagattatac agatgtcgtg gacttcgtgg agaaaagcaa tttccctgtc
      361 atttatggag atatgattga caatctctac cagctgctcg ctacccgcac caagtctgga
      421 aataccttga ttgaccagct ggtcagcgac gacctaatcc cagaggacaa tcgctaccac
      481 ttcttcaacg gcaaatcctt ggcaaccttt tcaacaaaaa aacttattcg tgaggtggtc
      541 tatgtcgaaa cgcctgtcga tacggctggg actggccaga ctgatattgt caagctgtcc
      601 attctccgtc cgcactttga cggaaaaatc cctgcagtga ttaccaacag tccttatcat
      661 caaggagtca atgaagttgc cagcgacaag gccctgcaca agatggaagg cgagttagct
      721 gaaaaacctg ctggcaccat tgaggtcaag cagaccagca tcaccaagct agacttggac
      781 cagcgagaac tacctgtcag ccctgctacc gaaaaactgg gccacatcac ttcttactct
      841 ctcaatgatt acttcctcgc tcgcggcttt gccagcctcc atgtgtctgg ggtcggcact
      901 ctgggctcga cgggctacat gacatctggc gactaccagc aggtggaggg ctataaagcg
      961 gtgattgact ggctgaacgg ccgcaccaag gcctacacag accatactcg ctcgattgag
     1021 gtcaaggccg attgggccaa tggtaaggtg gcgacgacgg gactgtctta cctcggcacc
     1081 atgtccaatg ccttggcaac aactggcgtg gacgggttgg aagtcgtcat cgcagaagcg
     1141 gggatttcct cttggtatga ctactaccgt gaaaacgggc tggtgaccag ccctggcggc
     1201 tatccaggcg aagatttgga cagcttgacc gccctgacct actcgaaaag cctgcaagca
     1261 ggcgacttcc tccgcaataa agcagcctac gaaaaaggac tggcggcaga acgagctgcc
     1321 ctggaccgca tcagcggtga ctacaatcaa tactggcagg accgcaatta tctgcttcat
     1381 actgacaagg tcaagtgtga ggtggtcttt acccacggct cacaggactg gaatgtcaag
     1441 ccaatccacg tctggaatat gttccatgcc ctgccaagtc acatcaaaaa gcacctcttc
     1501 ttccacaacg gtgcccacgt ttatatgaac aactggcagt ctatcgactt ccgcgagtcc
     1561 atgaacgccc tgctcagtca gaaactgctg ggctacgaga acaactacca actgccaacg
     1621 gttatctggc aggacaacag cggtgagcaa acttggacga ccttggacac ctttggcggt
     1681 gaaaacgaga ctgtcttgcc actaggtact ggaaaccaga ccattgccaa tcagtatgcc
     1741 caagaagatt ttgaccgcta cggcaaatca tatccagcct tccaccaaga cctctatgca
     1801 ggcaaggcca accaagtcag cattgaactg cctgtaacgg aggacctctt gcttaacggg
     1861 caggtcacgc tgaaactccg tgtcgcttct agtgtagcta aaggtctctt atctgctcag
     1921 ctattagaca aaggaaataa aaaacgccta gccccaatcc ctgcgcctaa agcaagattg
     1981 agtctagaca acggtcgtta ccatgcccaa gaaaatctgc tggagttgcc ttatgtggat
     2041 atgccacaac gcttggtaac caagggcttt atgaacctgc agaaccgcac cgacctaatg
     2101 actgtcgagg aagtggtgcc agaccagtgg atggatgtga gctggaaact gcaaccgact
     2161 atttatcagc tgaaaaaagg tgacgtctta gagctgattc tctatacaac cgactttgaa
     2221 tgcactgttc gggataataa caactggacc atttctcttg atttggagca gtctagcctt
     2281 catttaccat attaaaaaga gcttcccctt gcggaagctc ttttgatacc ttgtttatgg
     2341 tagtggatgt ataatcacac cctgcaccac acggttgacg gtgcctgttg gagatggtgt
     2401 atctggcaag ttgttgcact taatggctgc cataatagat accgtttggg caaagaggat
     2461 gtaagggaag gttaggaaaa catctggcag atctgcccca ccctctgcca agacaaaatt
     2521 ggctgcttct gtaccgacta acttatcagc cgacaatgcc actatccgct ctgctatgcc
     2581 atcaccatga acttcattaa gcaagtccac atcatactga cgagtgtagg catcgtttga
     2641 ggcaaagagg aaaatcaagg tcttttcgtt gatgaatgat tttggtccat gacggaaacc
     2701 gagtggtgac tcgtacatgg tcgcaatttt gcctgctgtc aattccagaa ttttcaactg
     2761 agcttcgtgg gcaagaccat agaaaccacc tgaaccgagg taaatcactc gctcaaaatc
     2821 aaggttaatc aagtcttgca cgtagtcttc acggtccaaa acatcttgac ccagacgggc
     2881 aatggtctca acccaagcag ctttttcttc ttgactggct ggcgagaaga cgaggagggc
     2941 tgtcagagcc atacagctgt aagaacctgt catggcaaag cccttatcgt ttgaaccagc
     3001 tggttgcaag agcaagagat tgtccgcatc cccttcggct gccagagcca atttgccctc
     3061 tggcgcacaa gtaatagtaa cttggtaaag ctgataaacc aattgcttgg caacttctac
     3121 tgctgccaca ctttctggtg aattccctga acgggcaaag gataccaaaa ccgttggcac
     3181 atctgcctgt aaatagtcat gtgggcgact aaccagctcc actgtaccaa tggcagaaaa
     3241 acgaatgtgt ttcaagtcat tgacttggtt gagatagttg gcaatacttt gcccaacaaa
     3301 gtcagaagtc cctgcacctg taaaaacaac gtgaacaaag tcatgcttgt ccttgatggc
     3361 tgttaggaag tcttcaatct tctcaagctg gtcaagatag agttgatgag cctctttcca
     3421 caagccaggc tgttggtaaa tttcggtcgc cgtaataata gctcccaatt tttctaattc
     3481 ttcttttgct aaacggaaca tagctcctcc ttgtttttct ggttataacc agttttttct
     3541 tatattatag cgaatttatc cctcaaagt
//
LOCUS       DASGAC010000183         3515 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.185, whole genome shotgun sequence.
ACCESSION   DASGAC010000183 DASGAC010000000
VERSION     DASGAC010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3515
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.185"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..242
                     /locus_tag="U1335_001935"
     CDS             <1..242
                     /locus_tag="U1335_001935"
                     /inference="COORDINATES: protein motif:HMM:NF012948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5232385.1"
                     /translation="VSSSESVSSSESVSTSTSTSESGSPSTSASRLTTLSSRSSERLP
                     NTGEATSSASAYGSALLLGTIALLAKRRKRDDKQE"
     gene            438..623
                     /locus_tag="U1335_001936"
     CDS             438..623
                     /locus_tag="U1335_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232386.1"
                     /translation="MSQPIVQLTVPQSRRFEKKSRNDILMKIRLGKTEVTFFQSINPE
                     VMETILDKVLHYDHPTQ"
     gene            604..1011
                     /gene="tnpB"
                     /locus_tag="U1335_001937"
     CDS             604..1011
                     /gene="tnpB"
                     /locus_tag="U1335_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001846105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HEM5232387.1"
                     /translation="MTIRLSDLGQVFLVCGKTDMRQGIDSLAYLVKSQFNRDPFSGQV
                     YLFCGGRKDRFKALYWDGQGFWLLYKRFENGKLTWPNNEEEVKALTSEQVDWLMKGFS
                     IIPKINRKRFQSRQDFGAFFNILCYWAVTYYQS"
     gene            complement(1133..2086)
                     /locus_tag="U1335_001938"
     CDS             complement(1133..2086)
                     /locus_tag="U1335_001938"
                     /inference="COORDINATES: protein motif:HMM:NF016145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide pyruvyl transferase family
                     protein"
                     /protein_id="HEM5232388.1"
                     /translation="MTKYALFNYSTESVGDEIQSLAAKRFLPQVDYYINRDFINDFQA
                     ESDEEIKLIMNGWFSHRPENFPIKLPQIKPLLVSMYFADYVKDAFSTAENIAYFKQHG
                     PVGGRSQDSTDFMHSLGVDSYHSACLTLTLQKEKTIPKRNFILAVDVPEEVYQKLVTL
                     TDSPIIRLNPVANHLYMSIDQRMKLAKYYLYLYQSAKFVITTRLHATLPSLALETDVL
                     MLEKPGFEDSRFKSLRELAHHMTIQEFLESGYNVEQPPKNPTTYLTYRKQLEDTCRAF
                     TGYQSNRGFLDGQDIVEFLHDPDLLQNITTGLHAANQLYGL"
     gene            complement(2346..3350)
                     /locus_tag="U1335_001939"
     CDS             complement(2346..3350)
                     /locus_tag="U1335_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEM5232389.1"
                     /translation="MKVHITNLYGQSPLSVALMAQNMVTEIAKKLDIKEIGIYSFNAD
                     GESVENLAIRFDGMNAAVGNGDVIIFQAPSWNGTHFDHEYLKRLRIYSGIKIVIFIHD
                     IPPLMFSSNFYLMEKTIEMYNMADLIIAPSQKMLDLLYQHGLRVTNTLLQNMWDHKTD
                     IWLEKPAFHRVVNFTGNPQRFHFVDDWQFATPLKLFAPDYYPTKPNNVSYQGWKYSLS
                     LLQELNKNGGFGLVWSQGEDAEYYNLNVSYKLSTYIAAGLPVIAPRSLSNAHYISDYK
                     LGFLVDSLEEADAIVATITEEEYRALLDPLWNFRELITKGYFAQKLLTDAIHQVLLPK
                     "
BASE COUNT         1021 a          616 c          787 g         1091 t
ORIGIN      
        1 cagtttcaag ctctgaatcg gtatcaagtt cagagtcagt gtcaacaagt acgtcaactt
       61 cagagtctgg ttcaccaagc acctctgcat ctagattgac cactctatct agtcgaagca
      121 gtgaacgttt accaaatact ggtgaggcta cttcatcagc tagcgcttat ggttcagcgc
      181 tactattagg aactattgcc ttgttagcta aacgtcgtaa acgtgatgac aagcaagagt
      241 aagagagtca tgaagattct tgagtagggt gtaaaaaata gccatatgct atgtcgataa
      301 caagcaaata taagagaggg cctgttggtc ttctcttttt ctacgagaat agtaagtaac
      361 cgccaaataa caaggtatct atccaatcac tcattcctcc agtatactga tataaaaaac
      421 aaactggagg attttttatg tcacagccca tcgtccaatt gactgttccc caatcgcgac
      481 gctttgaaaa gaaaagcaga aacgatattc tgatgaaaat tcgtctcgga aaaacggaag
      541 tcacattctt ccaatctatc aatcctgaag taatggaaac aatcttggat aaggtgctac
      601 attatgacca tccgactcag tgatttaggt caagtcttct tggtctgtgg gaaaacggat
      661 atgcgtcagg gaattgactc tctcgcctac cttgtcaaaa gtcaatttaa tcgggatccc
      721 ttctctggtc aggtctatct cttctgcgga ggtcgaaaag accgattcaa agctctttac
      781 tgggatggac agggattttg gttattgtat aaacgttttg aaaatgggaa attgacctgg
      841 ccaaacaatg aagaagaggt caaggcccta acttccgaac aagtagactg gctcatgaaa
      901 ggattttcta tcattccaaa aataaataga aaaaggttcc agagtcgaca ggactttgga
      961 gcctttttca atatactttg ttattgggcg gttacttact atcaaagcta attcaaatgt
     1021 ctatatataa aaaacagcga tcagttgacc taggttctag ggctggttcg ctgtttttgt
     1081 ttttgctagg taagagaggg agacatcttt ctaggtgttt gtagagaggc tattacagcc
     1141 catagagctg gttagctgcg tgaaggccag tagtgatatt ttgtaataaa tctggatcgt
     1201 gcaaaaactc gacaatatct tgtccgtcta aaaatccacg attactctgg tagcctgtaa
     1261 aagcacgaca ggtatcttca agctgttttc ggtaggttag ataggttgtt ggatttttgg
     1321 gcggttgctc aacattatat ccagattcta gaaattcttg aatggtcata tgatgagcca
     1381 gttctcttaa actcttaaat cgactatctt caaagccagg tttttctaac attaagacat
     1441 cagtttctaa agctagggaa ggtagggtag catgtaggcg agttgtaatg acaaatttag
     1501 ccgattgata gaggtagaga tagtattttg ccagtttcat tcgctggtca attgacatat
     1561 atagatgatt tgcgacgggg tttaaacgaa taatggggct atctgtcagg gtcactaact
     1621 tttgatatac ttcctctggt acatcgactg ctaggataaa attacgtttt gggatagtct
     1681 tttctttttg taacgtaagg gtcaagcagg cagaatggta gctatcaacc cctaaagagt
     1741 gcatgaagtc tgtcgaatcc tggctcctac ctcctactgg tccgtgttgt ttaaagtaag
     1801 caatgttttc agcggtagag aaagcatctt ttacataatc tgcaaagtac atggagacaa
     1861 gtagtggctt gatttgtgga agtttaatag gaaaattttc tgggcggtgg ctaaaccagc
     1921 cgttcataat cagtttaatc tcttcatcag attcggcttg aaaatcattg ataaagtcac
     1981 gattgatgta gtaatcaact tgggggagaa agcgttttgc ggcaagtgac tgtatctcat
     2041 cgccgacact ttctgtactg tagttaaata aagcgtattt tgtcatgtgt gttctttcta
     2101 aaaatttggt aataaaagca agtctctgat ttaaaaaaat agcaagactt taatgcatta
     2161 aaagcaaacg attttttatt tgtttttatc tattaatgtt taatttttgt aggagatatc
     2221 ggttaggcac ttgatgtgag agtggttgat aggtttatct tatgatggga tgtctggggt
     2281 atggagaaaa ttgtggttga taaactttgc tttgctctca tttttcacct ctaagctagg
     2341 cattactatt taggcaggag aacctgatgt atagcatctg tcagtaattt ctgagcaaag
     2401 tatccttttg taatcaattc tcggaaattc cagagcgggt cgagaagggc tcggtattcc
     2461 tcttcagtga tagttgcaac gattgcgtca gcctcttcta aactgtcaac aaggaaacca
     2521 agtttgtagt ctgagatata gtgggcattg gagagactac gtggggcaat gacaggtagt
     2581 cctgctgcga tataggtact caatttgtaa gaaacattga gattgtaata ttctgcatct
     2641 tctccttgtg accagaccag accaaagcca ccatttttgt ttaattcttg gagcaaactc
     2701 agactgtatt tccagccttg gtaggaaaca ttgttgggtt tggttgggta atagtctggc
     2761 gcaaagagtt taagcggtgt agcaaactgc cagtcatcaa caaaatggaa gcgttgagga
     2821 tttccagtga agttgacaac acggtgaaag gcaggttttt caagccaaat atccgtttta
     2881 tgatcccaca tattttgcaa gagagtattg gtgacccgaa gaccgtgctg gtagagcagg
     2941 tccaacattt tttgagaagg cgcgataatc aagtcagcca tattatacat ctcgatggtt
     3001 ttttccatca ggtagaagtt ggagctgaac atgagtggtg gaatatcgtg gataaagatg
     3061 acaattttta tgccagaata aattctcaga cgtttgaggt attcatggtc aaagtgggta
     3121 ccgttccagc taggtgcttg gaagatgata acatcgccgt ttcctacagc agcattcatg
     3181 ccatcaaatc gaatagccag attttcaacg ctttcgccat ccgcattgaa gctgtaaatt
     3241 ccgatttcct tgatgtctaa ttttttggct atttctgtga ccatattttg agccatgagg
     3301 gcaacgctca gaggtgattg accatagagg ttggtgatat gaactttcat gattatttcc
     3361 tttacttggc ttgttgaagt agtagctgat tgataaacca ctacgatgtg agtaaatgat
     3421 ttaatggtag agaaaggtga ttgatttcat ttgcaagttt atagttattt tgaatggtct
     3481 tgtcataaaa accatcatcc attagaaaag cttga
//
LOCUS       DASGAC010000184         3483 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.186, whole genome shotgun sequence.
ACCESSION   DASGAC010000184 DASGAC010000000
VERSION     DASGAC010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3483
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.186"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            8..679
                     /locus_tag="U1335_001940"
     CDS             8..679
                     /locus_tag="U1335_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018165746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5232390.1"
                     /translation="MKNRRNEKKLSQSEIASKIGVNRTAFHNWENGKSVPNKKNLIAL
                     AAILDVPVTYFESEYYIVNNYLQLSPDNQIKAEDFVEELLLSQQTSKVTPLFSVQVLS
                     DIQLSAGLGEGFFDEFETETVYSDEEQYGYDFAAWIEGDSMEPVYKSGEVALIRSNGF
                     DYDGAVYALSWNDSVYIKKLYREEYGFRMVSLNKDYPEKFIPYEDEPKIVGLVVGHFM
                     PVEGV"
     gene            682..909
                     /locus_tag="U1335_001941"
     CDS             682..909
                     /locus_tag="U1335_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232391.1"
                     /translation="MKLKDILELGTYGFNPDCKVEIFNMDNFEERLENEGFDEILIPQ
                     NEDAKIYPYAFLIEDSILIAMTDEMEDMNEN"
     gene            899..1075
                     /locus_tag="U1335_001942"
     CDS             899..1075
                     /locus_tag="U1335_001942"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232392.1"
                     /translation="MKIRTLPCGCKRQIEEININGEIHEIQVFGHTPEKPPLTEEEKQ
                     KLALIVQEHLEKKV"
     gene            1090..1383
                     /locus_tag="U1335_001943"
     CDS             1090..1383
                     /locus_tag="U1335_001943"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232393.1"
                     /translation="MHRIPYNQDKRILVDLPGGKTADITVHILNVAIRWFVENNYHIS
                     KFTTDDQVMALAFIEDTEPLTAVESYYKIQKEDYRPTASEKEKNNGLYEIREE"
     gene            1355..1519
                     /locus_tag="U1335_001944"
     CDS             1355..1519
                     /locus_tag="U1335_001944"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232394.1"
                     /translation="MVYTKSVKNDTRLQPKKMPYNKNNRTILAFEKEEYDVTDHLTEL
                     VDELAKLKTR"
     gene            1525..2939
                     /locus_tag="U1335_001945"
                     /pseudo
     CDS             1525..2939
                     /locus_tag="U1335_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002888528.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
     gene            2936..3286
                     /locus_tag="U1335_001946"
     CDS             2936..3286
                     /locus_tag="U1335_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000567200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232395.1"
                     /translation="MIDRSYLPFKVAREYQDRKMAKWMGFFLSEHTSGLEQERNRIDY
                     STELTLADKLLLLNQLYSHQLNGILTVPGKIYIGKVKNLTFQSVSFETKEGYISIQIS
                     DILAIDLEVEHESA"
     gene            3273..>3483
                     /locus_tag="U1335_001947"
     CDS             3273..>3483
                     /locus_tag="U1335_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232396.1"
                     /translation="MNQLEFNRNQLQMDYFSGSYRKFEEDFYRYSALDIPLTFLTDDI
                     MLAMAKSQKPYFKLNKENSKDNQDHY"
BASE COUNT         1201 a          604 c          681 g          997 t
ORIGIN      
        1 agaacgtctg aaaaatcgaa gaaatgaaaa aaagttatca caatccgaaa ttgcttctaa
       61 aattggagtt aatagaactg cgtttcataa ttgggaaaat ggaaagagcg tccctaacaa
      121 aaaaaacctc attgccctcg ctgctatcct tgatgtccct gtcacttatt ttgaatctga
      181 atactatatc gtcaataact atcttcagtt atctcctgat aatcagataa aggcagaaga
      241 ctttgtagag gagcttcttc tttcccaaca aacctctaaa gtaactccac tcttctcagt
      301 ccaagtgcta tcagatatcc aactctcagc tggtctcgga gaaggattct ttgacgagtt
      361 tgaaactgaa acagtctact cagatgagga acaatacggt tacgactttg cagcttggat
      421 tgagggagat tctatggagc ctgtctataa gagtggtgaa gtcgcgctta ttcgctcgaa
      481 cggattcgat tatgatggag ctgtctatgc attatcatgg aatgactcag tttatatcaa
      541 aaaactctac cgcgaagaat atgggttcag aatggtttcc ctgaataagg actatcctga
      601 aaagttcatc ccttatgaag atgagccgaa aattgttggt ctagttgtag gtcactttat
      661 gcctgtcgag ggagtatagt catgaaattg aaagatattt tagaacttgg aacatacggt
      721 ttcaatcctg attgtaaagt tgaaattttc aatatggaca actttgaaga gcggctagaa
      781 aatgaaggat tcgatgaaat tcttattcct caaaatgagg atgcaaaaat ctatccttac
      841 gcttttttga tagaagattc tattttgatt gcaatgacag acgaaatgga ggatatgaat
      901 gaaaattaga acgttaccat gtggttgtaa acgtcagatt gaagaaatca acatcaacgg
      961 tgaaatacat gaaattcaag tatttggaca tacccctgaa aagccaccat tgaccgagga
     1021 agaaaaacaa aaacttgcac tgattgttca agaacactta gaaaagaaag tctaaaaagg
     1081 atttgatata tgcacagaat accatataat caagacaaac gtattcttgt agatttacct
     1141 ggaggtaaga ctgctgacat tacagttcat attttaaatg ttgcgatccg atggtttgta
     1201 gagaataact accatatctc caagtttaca acagatgacc aagttatggc attggcattc
     1261 attgaagata cagaaccact tacggcagtt gaaagctact ataaaattca aaaagaagat
     1321 tatcgcccca ctgcatctga aaaggaaaag aataatggtt tatacgaaat ccgtgaagaa
     1381 tgacactcgt ctacaaccta agaaaatgcc ttataacaaa aataatcgga ctattctagc
     1441 ctttgaaaaa gaagaatacg acgtaacaga ccatctgaca gaattagtcg atgaactagc
     1501 aaaactaaaa acaaggtgaa tagtatgggc tatatcgact attcaaaaga gccacgtagc
     1561 gatattgctt ttgttgatat gaaatccttc tacgcatcaa tcgaatgtgt agagagagga
     1621 cttcacccgc ttcatacttc actttgtgtg atgagtaggg cagacaactc ttctggtcta
     1681 attttagcct cttctccaat gttcaaaaaa gtctttggta aaggaaatgt tggcagagcc
     1741 tacgacctcc cctttgatat tcataccaga aaatttaact attaccgtgc taaaatctca
     1801 ggattaccaa cggatgcaaa gtttgtttcc ttcatagaaa attgggccaa gcgtacattt
     1861 attgtgccac cgagaatgga cttgtacatt caaaaaaatc ttgaaataca aaaagtattt
     1921 caaaattatg cagatccgac agatattctg ccctattcta ttgatgaggg attcatagac
     1981 ttaacttcat cgctaaatta ttttgttgaa aaaaatctct aagtcgcaaa gaaaagttag
     2041 atgtagtttc agcaaaaatt caacacgata tttgggaaaa aacaggtgtc tattcaactg
     2101 ttggtatgag taatgctaat ccacttcttg ccaaattagc acttgataat gaagctaaaa
     2161 ccactgctac catgcgtgcc aattggtcct atgaagatgt tgaaacgaag gtctggaaca
     2221 ttccgaaaat gaccgacttt tggggaatcg gttcacgaac agaaaaacga ctaaacaaat
     2281 tgggaatcta cagcatcaaa gaattggcca actgtgaccc tactatcttg aaaaaagaat
     2341 ttggtgtaat tggcgtgcaa cattggtttc atgctaatgg tattgatgaa agtaatgtcc
     2401 atgaacctta tcgccctaaa gcagtcggga ttgggaattc gcaagtgctc cataaagatt
     2461 acactcgtca aagtgatata gagcttgtcc tgcgggaaat ggcagagcaa gttgcgattc
     2521 ggctacgcag aagacataaa aaagcaactg tagtcgccat aaatgtaggc tattcaaatt
     2581 tcgaaaacaa gaaatcaatc aatgttcaga gaaaaattaa cccaaataat cgtacgcttg
     2641 tttttcaaga tgaagttgtt tctctctttc gttcaaaata cgatggaggg gcagttagaa
     2701 gcattgctgt aaggtacgat ggattggtgg atgaaaactt tgctgtgatt tctctttttg
     2761 atgactttga agaaagtgaa aaagaggaaa aattggagac aaccattgat tccattcgtg
     2821 atcgatttgg atttcttgct gtacagaaag ctagttcttt attagaaaat tcaagggcaa
     2881 ttgctcgcag tagattagtc ggcggacatt ccgctggagg attggaggga ttaaaatgat
     2941 tgatagaagt tatctgccat ttaaggttgc tagagaatat caagatcgaa agatggccaa
     3001 atggatggga tttttcttgt cagaacatac atcaggttta gaacaagaac gtaatcgcat
     3061 tgattattca actgaattaa ccttagctga taaactactt ctactcaatc aactatatag
     3121 tcatcagtta aatggtattc tgacagttcc tggaaaaatt tacattggaa aagtaaaaaa
     3181 tttgaccttc caatctgttt catttgaaac aaaagaaggc tacatcagta tccaaatatc
     3241 tgatattctt gcaatagact tggaggtaga gcatgaatca gcttgagttt aatagaaatc
     3301 aattacaaat ggattacttt agtggtagct accgaaaatt tgaagaggat ttctatcgct
     3361 actctgccct agatattcca cttacgtttt taacagatga tattatgctt gccatggcaa
     3421 aatctcaaaa accctatttc aagctaaata aggaaaattc gaaggataat caggaccatt
     3481 att
//
LOCUS       DASGAC010000185         3477 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.187, whole genome shotgun sequence.
ACCESSION   DASGAC010000185 DASGAC010000000
VERSION     DASGAC010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3477
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.187"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            13..2205
                     /gene="metE"
                     /locus_tag="U1335_001948"
     CDS             13..2205
                     /gene="metE"
                     /locus_tag="U1335_001948"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEM5232397.1"
                     /translation="MTEKYFRNEIPQEELLEAAKDLRAKHWNIVKEAGITEIPSNDFS
                     HYDNVLDAAVLFNIVPKAVQNLDLTDLEKYFALARGYQGEKGDVRARPMKKWFNTNYH
                     YIVPAIEKDTEIKLAGHKIFDEFQEAKNLGITTRPVLIGPFTLLQLTDFEEGLTATDF
                     ADSLVAAYGQVFEKLAEFGAEKIQLDEPSLVKDLTAEEKALFLRIYQTLLADKKGLQI
                     LIQTYFGDVRDIYTELTSLPVDAIGLDFVEGKETAALVATGFPADKTLYAGIVNGKNI
                     WRNNYEKSLAVLDGIPAENVVLTTSCSLLHVPFTTANEEFEPAILNHFAFAVEKLSEL
                     RDLDAIRNGQGDTVLAANKELFALERVGRDTALADRLAGLTDADYTRLPVFAEREAIQ
                     REKLNLPLLPTTTIGSFPQTKEIRSTRLAFRKGNISEEEYEAFVKTQTDEWIAWQEEV
                     DFDVLVHGEFERNDMVEYFGENLSGYLFSKNGWVQSYGMRGVKPPIIWGDVTRLNPIT
                     VKWSSYAQSRTNKPVKGMLTGPVTILNWSFPREDISIKESTLQIALAIKEEVLDLEAA
                     GIKIIQIDEAALREKLPLRRSDWYSEYLDWAIPAFRLVHSTVAPDTQIHTHMCYSEFT
                     DIIPAIDNMDADVISFEASRSNLVILDELKAKNFQTQVGPGVYDIHSPRVPAVDEIAH
                     TIQAILAKVPKEKVWINPDCGLKTRGESETKASLIHLTQAAKAARKEL"
     gene            2209..3069
                     /gene="metF"
                     /locus_tag="U1335_001949"
     CDS             2209..3069
                     /gene="metF"
                     /locus_tag="U1335_001949"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HEM5232398.1"
                     /translation="MIGQTPSLSFEIFPPKPAVGNEKIIQTLDEMQGLAPHFISVTCS
                     NNNLNVEETTVKLANHVRNELHIPTIAHLPAAYLTKEKVRSVLHSLDEIGVYQILALR
                     GDIIEGLPPKEDFQYATDLISFIKEEAPHFDIIGACYPEVHPESPNSVSDIKNLKKKV
                     DAGCSTLVTQLFFDNEAFYNFQEKCSLADIEVPIIAGIMPIINRNQALRLLKTCENIR
                     LPRKFKAILEKYEHNPESLRAAGLAYAVDQIVDLVTNDVAGVHLYTMNNAETARTIHQ
                     ATHSLFKHYS"
BASE COUNT         1064 a          807 c          681 g          925 t
ORIGIN      
        1 gagttaaaat ttattactga aaaatacttt agaaatgaaa ttccacaaga agaacttttg
       61 gaagcagcta aagatctacg tgctaagcac tggaatattg ttaaagaagc aggcattact
      121 gaaatcccaa gcaacgactt ctctcattat gacaatgttt tggatgcagc tgttctcttc
      181 aacatcgtac ctaaagcagt acagaacctt gacttgactg accttgaaaa atacttcgct
      241 cttgcgcgtg gctatcaagg agaaaaaggg gacgttcgtg ctagacccat gaaaaaatgg
      301 ttcaacacca actaccacta tatcgttcca gccatcgaaa aagacactga gattaaacta
      361 gctggtcata agattttcga tgaattccaa gaagcaaaga acttgggcat cacaactcgt
      421 ccagttttga ttggtccatt cacactctta caattaactg attttgaaga aggtttaact
      481 gctactgatt tcgctgatag cttagttgca gcctacggac aagtctttga aaaattggca
      541 gagttcggtg ctgaaaaaat ccagctggac gaacctagct tggtcaagga tttgactgct
      601 gaagaaaaag cccttttcct acgtatctac caaacactct tggcagataa gaaaggtttg
      661 caaatcctca tccaaaccta cttcggtgat gttcgtgata tttacacaga attgaccagc
      721 ctaccagttg atgctatcgg ccttgacttt gtagaaggta aggaaactgc tgcacttgtt
      781 gcgacaggtt tcccagctga caagaccctc tacgccggta tcgtcaacgg taagaacatc
      841 tggcgcaaca attatgaaaa gagcctggct gttttggatg gtattccagc tgaaaatgtc
      901 gttctaacaa cttcttgctc actacttcat gtaccattta caacagccaa tgaagaattt
      961 gaaccagcta tccttaacca tttcgccttt gcagttgaaa aactgagcga attgcgcgac
     1021 ttagatgcta tccgaaatgg tcaaggagat actgtgcttg ctgccaacaa ggaactcttt
     1081 gcccttgaac gtgtggggcg tgacacagcg cttgcagacc gcttggcagg tttgacagat
     1141 gcagactaca ctcgcttgcc tgtctttgca gaacgcgaag ctattcaacg cgagaagcta
     1201 aacttaccac ttcttccaac aacaacgatt ggctctttcc ctcaaaccaa agaaattcgc
     1261 agcacacgct tagctttccg taaaggaaat atctcagaag aagaatacga ggcatttgtc
     1321 aaaactcaaa cagatgagtg gattgcatgg caggaagaag ttgacttcga tgtactggtt
     1381 cacggtgaat ttgaacgcaa cgacatggtt gaatacttcg gtgaaaacct gtctggctac
     1441 ctcttcagta aaaacggttg ggtacaatcc tacggtatgc gtggggtcaa accaccaatc
     1501 atctggggtg atgtaacacg tttgaaccct attactgtca aatggtcaag ctacgctcaa
     1561 agccgtacca acaaaccagt taaaggtatg ttgacaggtc ctgtaaccat cctcaactgg
     1621 tcattcccac gtgaagatat ctctatcaaa gaatcaaccc ttcaaattgc ccttgctatc
     1681 aaggaagaag ttctcgacct tgaagcagct ggaatcaaga ttatccaaat cgacgaagct
     1741 gctcttcggg aaaaattacc actccgccgt agcgactggt acagcgagta tcttgactgg
     1801 gcaattccag ctttccgttt ggttcactca actgttgcac cagacacaca aatccatacc
     1861 cacatgtgct atagcgaatt tacagatatt attccagcca tcgacaatat ggatgcggac
     1921 gttatctcct ttgaagctag ccgttcaaat ctagttatcc tagatgaact caaggctaag
     1981 aacttccaaa ctcaggtagg tcctggtgtc tatgacatcc actctccacg tgtccctgcc
     2041 gttgatgaaa ttgcacacac gatccaagcc atccttgcta aagtaccgaa agaaaaagtt
     2101 tggattaacc cagactgcgg acttaaaacc cgtggcgaat cagaaacaaa agctagtctt
     2161 atccacttga ctcaagcagc taaggcagcc agaaaggaac tctaatttat gattggtcaa
     2221 accccaagtc tctcatttga aatttttcct ccaaaaccag cagtaggcaa tgaaaagatt
     2281 atccaaactc tcgatgagat gcaaggtttg gcccctcatt ttatcagtgt gacttgtagc
     2341 aataacaatt tgaacgtaga agagactact gtcaagttgg ctaaccatgt tcgcaatgaa
     2401 ttgcatattc caactatcgc acatttgcca gctgcttact tgacaaaaga aaaggtccga
     2461 tccgttcttc attctctcga tgaaattggt gtgtatcaga ttttagcact tcgtggcgat
     2521 atcattgaag gtctcccccc taaagaggac ttccagtatg caactgactt gatttccttt
     2581 atcaaggaag aagccccaca ttttgacatt attggagcct gttatccaga agtacatcca
     2641 gaatcaccaa attctgtctc agacatcaaa aatttgaaaa agaaagttga tgccggttgc
     2701 tcaaccttgg taactcaact cttcttcgat aacgaagcat tttataactt tcaggagaaa
     2761 tgttctctag cagacatcga agtgcctatt atcgcaggta ttatgcctat catcaacagg
     2821 aatcaggcac ttcgtctctt gaaaacttgt gagaatatcc gcctccctcg taaattcaag
     2881 gccatcttgg aaaaatacga gcacaatcct gaatctcttc gggcagcagg tctggcctat
     2941 gctgtagatc aaattgttga cttagtgacc aatgatgtcg caggtgttca tctttatacc
     3001 atgaacaatg ccgaaacggc acgcaccatc catcaggcaa ctcattcgct attcaaacat
     3061 tatagttaga aaactccccc tgagcccaag ctcaggggtt attctatgcc ctgtgactcc
     3121 caaagactac atgataaatt tttcacccca tcatgacatt tatccagcag atgtctaggt
     3181 atgtgacatc ttgcttacaa taatgaacag ccatttaaaa tacagtcaca aggagtaaaa
     3241 atggcactaa gaggagacag agaagcgatg aaatggaaaa atatagtcat ttgaattaac
     3301 tttgatacat cgtcactttc ggcttgccgt acccaacgaa agtgacttac atcgcaagtc
     3361 ttatttccaa cctagaacag cctctaggct gttctagcaa cctgcacctc agttccttgt
     3421 ctgaaagcta attcattcga ctgatatgta aagccctttg tcaagtaaaa acaatcg
//
LOCUS       DASGAC010000186         3438 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.188, whole genome shotgun sequence.
ACCESSION   DASGAC010000186 DASGAC010000000
VERSION     DASGAC010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3438
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.188"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            59..>3438
                     /locus_tag="U1335_001950"
     CDS             59..>3438
                     /locus_tag="U1335_001950"
                     /inference="COORDINATES: protein
                     motif:HMM:NF019202.1,HMM:NF038186.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1542 domain-containing protein"
                     /protein_id="HEM5232399.1"
                     /translation="MSSKDMFRKEQRFSFRKFSFGLASAVIANVIFGGAIANSPVVHA
                     NTTTETAAVATSERIASIPYTVNIVDQAGKVVETKEKKVLVYTVETIATATEYLTADL
                     VPEGYAIVSGLGEVTLTEKADNIFTVKVDKIAPEAVAPTTTAESATSETSTAATPEPA
                     SLTATQPTPVTSEVAEAEVAPTTSEESAKPTERTVYLSYITHYVNEANETVDRTGHLV
                     AVTTTDETAKTQVTVSASENMPSGWELVQDKAKVVVQLVENQTNILVFAVTKKSKEEE
                     IAESQLSNRDVLMRLSLEADLLADEALRQVAKEQAGNTALETAANETKAVAATANEVL
                     ANDAATETELDDQIDTVRTSTQNLAAEMLKFDEDGVLTAMLDATTQAITITTSSKGAV
                     RPDYENHIRAYATSADQRIYNGQDFFFGLIGKALTEQDSQIRAEAQASDGTTPTISIV
                     GGGGEPIRTISNFGLQDNGSGVLYGTTTISEAGNAFSWKFKASSGNNSAESKFTFVPY
                     TVVKTDNEPVRKAVTAGVTADDILAKVKSDVTRDDGSTRGPLNATFEEYFNTTLTARA
                     TGKSTTVTEDAKNGKQIWHEIVGEIPTTAGEHTVTVRSTNVHGQTIENTVTVILIETP
                     TVKANTDGTVTVTPSQTDGVTKTVDVTYTDEAGVGKTVTATKGQDGNWTVPTDSGVTV
                     NPTTGAVTIPANSVQNGSTVKAVAKDSAGSPSTAATAEALNPPTTVQDKQTIYVFNNE
                     SIKTVDAGTNVDSSTADDKVKVVTLKDPDGIKSVEVGEDGLGNEYKVDAEGFASGKPS
                     VSALGKHGRSFAVTDNQDQVTNVLTATADKQLTYVMDARATGEINKAAGESATADEIL
                     AKVTVDPGNERAHIEGTADRNPKYRKVLAPDQTLPTTPGTHTVNVRVITDSNVYKDVP
                     VKVIIPKYSDTLTATAAENTSLVPGSGTAVTQPIVINDKNDTPTTAPAGTTYEIDPAF
                     KAEKEALGYEISVSPTGEVSVKAPAGQEADITVPVTVTYPDKTTDDSVSVPFKVDQKG
                     LAQLKAKEALDDEAKAAKEAINNNPNLSTKEKEDAVKAVDTATEAAKKAVNDATTIDA
                     VDAAKEAGTKAIDAKELDAAKLDAKNKIAKDVEAANTA"
BASE COUNT         1219 a          709 c          740 g          770 t
ORIGIN      
        1 taaaaaggtc tatgttagtg actatggcat aagccagcat aattatagga ggattttcat
       61 gtctagtaaa gatatgttta gaaaagaaca acgtttttct tttcgtaaat ttagctttgg
      121 tctagcttct gcggtcattg ccaacgttat tttcggtgga gcaatcgcaa acagccctgt
      181 tgttcatgcc aacacaacaa ctgaaacagc tgcagtcgca acaagcgagc ggatagcatc
      241 cataccatac acagttaaca tcgtggacca agcaggtaaa gttgttgaaa cgaaagagaa
      301 aaaggtttta gtatatacag ttgagactat tgcaacagca acagaatact tgactgctga
      361 ccttgtgcca gaaggctatg ccattgtatc aggattaggt gaagttaccc ttactgaaaa
      421 agcagacaac atcttcacag taaaagtaga caaaattgca ccagaagcag tagcaccaac
      481 tacgacagct gagtcggcta catctgaaac atcaactgca gcaactcctg agccagcaag
      541 tttaacagct acgcaaccaa caccagtgac atcagaagta gctgaggctg aggtagcacc
      601 aactacatca gaagaatcag cgaaaccaac agaacgtaca gtatacctta gctacatcac
      661 tcattacgtc aatgaagcaa acgaaactgt tgacagaaca ggtcaccttg tagctgtaac
      721 aacaactgat gaaacagcta aaacacaagt aaccgtgtct gcatctgaga atatgccttc
      781 tggttgggaa ttggttcaag ataaggcaaa agttgttgtt caattggttg aaaaccaaac
      841 aaatatatta gtttttgccg taacgaaaaa atctaaagaa gaagagattg cagaatcaca
      901 attgtcaaac cgtgatgtct tgatgcgatt gtctttagaa gcagacttgc ttgctgacga
      961 agctctccgc caagtagcga aagagcaagc tggcaacact gcccttgaaa cagctgctaa
     1021 cgaaacgaaa gcagtagctg ctaccgctaa tgaagttttg gcaaatgacg ctgcaactga
     1081 aacagaactc gatgaccaaa tcgacacagt acgcacaagc acacaaaacc ttgcagctga
     1141 aatgttgaaa ttcgatgaag acggtgtctt gactgccatg ttggatgcga caactcaagc
     1201 tattacaatc accacgtcaa gtaaaggtgc agttcgtcca gactatgaaa atcacattcg
     1261 tgcttatgca acctctgctg atcaacgaat ttacaatggt caagatttct tctttggttt
     1321 gattggcaag gcgttaactg aacaggacag ccaaatccgt gcagaagcac aagcttcgga
     1381 tggcacaact ccaaccattt caatcgtagg tggtggagga gaaccaatca gaactatatc
     1441 aaactttgga cttcaagaca atggttctgg tgttctatac ggaacaacca ctatctcgga
     1501 agcaggtaat gccttttcat ggaagttcaa agctagcagt ggtaataact cagcagaatc
     1561 aaagttcacc tttgtaccat atacggttgt aaaaacagat aatgagccag ttcgtaaagc
     1621 agttacggcg ggagtgactg ctgatgacat ccttgcaaaa gtcaagtcag atgtaacacg
     1681 tgatgatggt tcaacacgag ggccattgaa cgctacgttt gaagaatatt tcaacactac
     1741 attgactgca cgtgcgacag ggaaatcaac cactgttaca gaagatgcta agaatggtaa
     1801 acaaatttgg cacgaaattg tgggagaaat tccaacaact gcaggtgaac atactgtaac
     1861 agttcgttca acaaacgtcc atggtcaaac tatcgagaat acagttacag taatccttat
     1921 agaaacacct acagtaaaag caaatacgga cggtacagta accgtaacac catcacaaac
     1981 agatggcgta actaagacag tagatgttac ttatacggat gaagctggag tagggaagac
     2041 tgtcacagct actaagggtc aagatggcaa ctggacagtt ccaacagatt caggtgtgac
     2101 tgtaaatcca acaacaggtg cagtaactat cccagcaaat tcagtacaaa atggttcaac
     2161 agtaaaagct gtagcgaaag atagcgcggg ttctccatca acagcagcaa ctgctgaagc
     2221 attgaaccct ccaacaacag ttcaagataa gcaaacgatt tatgtgttca acaatgaatc
     2281 aatcaagacg gtagatgcgg gtacgaatgt ggattcttct acagctgacg acaaggtaaa
     2341 agttgtgacc ttgaaagatc cagatggaat taagagtgtt gaagttggtg aagatggatt
     2401 aggaaatgaa tacaaagtag atgcagaagg tttcgcgtca ggaaaaccat ctgtttcagc
     2461 attaggtaaa cacggtcgtt catttgctgt aacggataac caagatcaag taacgaatgt
     2521 attaacagct actgcggata agcaattaac atatgttatg gatgcacgtg caactggaga
     2581 aattaacaaa gcagctggcg aatcagcaac agctgacgaa attctcgcaa aagtaacagt
     2641 tgatccaggt aacgaaagag cacacatcga aggaacagct gatagaaatc ctaagtaccg
     2701 caaggtattg gcaccagatc aaacacttcc aacaacacca ggcactcata cagtaaatgt
     2761 ccgtgttatc acagattcaa acgtttataa agacgtacca gttaaggtta tcattcctaa
     2821 gtactcagat acattgacag ctactgcagc tgaaaacacg agcttggtac caggaagtgg
     2881 cacagcagta actcaaccaa tcgtcatcaa cgataaaaac gatactccaa caactgcacc
     2941 tgcaggcaca acatacgaaa tcgacccagc cttcaaagct gaaaaagaag cacttggtta
     3001 tgaaatttca gtaagcccaa ctggtgaagt ttcagttaaa gcacctgctg gtcaagaagc
     3061 ggacatcact gttcctgtaa ccgtgactta cccagataag acgacagatg attcagtgag
     3121 cgtaccattt aaagttgatc aaaaaggctt ggctcaattg aaagcgaaag aagcacttga
     3181 tgatgaagca aaagctgcta aagaagcaat caacaacaat ccaaacttgt caacaaaaga
     3241 gaaggaagac gctgtaaaag cagtagatac tgcaacagaa gctgctaaaa aagcagtaaa
     3301 tgatgcgaca accattgatg ctgtcgacgc cgctaaagaa gcaggtacga aagctatcga
     3361 tgctaaagaa cttgacgcag ctaaattgga tgctaagaat aagattgcca aagatgtaga
     3421 agcggcaaat acagcgat
//
LOCUS       DASGAC010000187         3414 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.189, whole genome shotgun sequence.
ACCESSION   DASGAC010000187 DASGAC010000000
VERSION     DASGAC010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3414
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.189"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            192..1565
                     /gene="mnmE"
                     /locus_tag="U1335_001951"
     CDS             192..1565
                     /gene="mnmE"
                     /locus_tag="U1335_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEM5232400.1"
                     /translation="MITKEFDTITAISTPLGEGAIGIVRLSGTDAFAIASKVFKGKDL
                     ATVPSHSLNYGHIIDPATGQVLDEVMIGAMRSPKTFTREDVIEINTHGGIAVTNEILQ
                     LLIRQGARMAEPGEFTKRAFLNGRVDLTQAEAVMDVIRAKTDKAMHNAVRQLDGSLSQ
                     LINDTRQEILNTLAQVEVNIDYPEYDDVEEATTELVREKTLQFQALLENLLRTARRGK
                     ILREGIATAIIGRPNVGKSSLLNNLLREEKAIVTDIAGTTRDVIEEYVNIKGVPLKLI
                     DTAGIRETDDIVEKIGVERSKKALEEADLILLVLNASEPLTEQDRNLLAISDLANRIV
                     LLNKTDLEEKIEADQLPEDVIRISVLKNQNINQIEEKINQLFFENAGLVEQDATYLSN
                     SRHISLIEQAIQSLQAVNDGLEMGMPVDLLQVDLTRCWQILGEITGDAAPDELITQLF
                     SQFCLGK"
     gene            1678..2754
                     /locus_tag="U1335_001952"
     CDS             1678..2754
                     /locus_tag="U1335_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232401.1"
                     /translation="MKKIIICITLLSCLVFPFIGWKLYAYQHNKIQLTEKADFYLVYP
                     GKVEAFQLNGQEPVLLHTQKMNSEGYFGSGKNYLLEDRYLVFGNDHQKFIHDNLISID
                     FTDGTVLRKPSKHSTSISGTDGNHFYTAGAYHTLAQFDKQFESIQTLVLNDDFIPNAP
                     VMADQTSVYLTGFVKDFTQEGPEENVLVVFDKKDFSKQEVFKYDNTIATGDGLLINGT
                     IYLPNLGKKTSEYEDIEQSSELLTFDTRSKTFSSIKLEHPSPSTLHALKDENLLLIEH
                     QNGMFSPLSFTIYNTQTGEQSYHTLKDLNPRPHYIDHIRQIDDKRLMIILANQLLIYD
                     MEAKSIISQTTLSEDYVSGVWINP"
     gene            complement(2787..3368)
                     /locus_tag="U1335_001953"
     CDS             complement(2787..3368)
                     /locus_tag="U1335_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HEM5232402.1"
                     /translation="MKKKWLAILIPVFALLFLGMGAIGQYNGLVDSHAEVENAQANVD
                     TQLQRRYDLIPNVVAAVKGAMEHEEEIFTAIADARAKIGSSQVGTSDYNQAQSQLDSA
                     VSRLLMVTENYPQLTANQQVSDLITELEGTENRILVARKDYNAVATAYNKKIKRFPTS
                     IYAGLFGYEKVELFQATNDAATTVPSVDLQDEE"
BASE COUNT          971 a          864 c          683 g          896 t
ORIGIN      
        1 tttagaagtt tcatatttct ctcctaaaaa atacaaagat tatgtaggtt aattttatca
       61 tattttaagc tagaatggaa tagaaaaaca attgattgag cgggtattca cacttcctca
      121 tccctcatct gtgctttttt tatcattcca tgatacacta atagataaga cgattttaga
      181 aagaaagata tatgataaca aaggaattcg acactattac cgctatttca acccctctcg
      241 gtgagggagc tattgggatt gtccgcctgt cagggacgga cgcttttgcc attgctagca
      301 aggtcttcaa aggaaaagac cttgcgactg tacccagtca cagcctcaac tacggccaca
      361 ttatcgatcc tgcgacgggt caagtgctgg acgaggttat gatcggagcc atgcgttcac
      421 caaagacctt cacgcgcgaa gatgtcatcg agattaacac ccacggaggc atcgccgtta
      481 ccaacgaaat cctccagctc ctcattcgcc aaggggctcg aatggctgag ccgggtgaat
      541 ttaccaagcg tgcctttctc aacggccgtg tggatttgac ccaggccgag gccgtcatgg
      601 atgtcatccg tgccaagact gacaaggcca tgcacaatgc cgtccgccag cttgacggct
      661 ccctctccca gctcatcaac gacacgcgcc aggagattct caacacgctg gcacaggtcg
      721 aggtcaacat cgactaccct gagtatgacg acgtcgagga ggcgacgaca gagctggtcc
      781 gtgagaagac cctccagttc caagccctgt tggaaaatct ccttcgtacc gcccgccgtg
      841 gtaaaatctt gcgtgaaggc atcgcaaccg ccattattgg tcgtcccaat gtgggaaaat
      901 ccagcctact caataaccta ctccgcgagg aaaaagccat cgttacagat atcgcaggaa
      961 caacccgcga cgttatcgaa gaatacgtca acatcaaagg cgtccccctc aagctgattg
     1021 atacagcagg tatccgcgaa actgacgaca tcgttgaaaa aatcggcgtc gaacggtcca
     1081 aaaaagccct tgaggaggcc gacctcatcc tgctagtcct caacgcatcc gaacccctga
     1141 ccgagcaaga ccgtaacctc ctagccattt ccgatttggc caaccgtatc gtcctactca
     1201 acaagaccga cctggaagag aagattgaag cagaccaact gcctgaggat gtcattcgca
     1261 tttccgtctt gaaaaaccag aatatcaacc aaatcgaaga aaaaatcaat caactcttct
     1321 ttgaaaatgc tggtctggta gagcaagatg ccacctacct ctccaactcc cgccatattt
     1381 ccctgattga gcaagccatc caaagcctgc aagctgtcaa tgacggtctt gaaatgggca
     1441 tgcctgttga cttgttgcag gttgacctga cccgttgttg gcagattttg ggagaaatca
     1501 caggcgacgc tgctccagac gaactcatca cccagctctt tagccaattc tgccttggaa
     1561 aatagtatca catatcatgc aagaaaactt gtatgatttt tttaatatat caacacataa
     1621 aatcttgaca atatatacac tttaagatat actaaaatat agagaggagg tctttccatg
     1681 aaaaaaatca ttatctgtat tacacttctg tcctgtctag tttttccctt tatcggctgg
     1741 aaactctacg cctaccagca caataagatt caattaacag agaaagctga tttctacttg
     1801 gtttatcccg gtaaggtcga agcttttcag ctaaatgggc aagaacctgt tctacttcat
     1861 acccaaaaga tgaattccga aggctatttt ggctcaggga aaaattacct cctcgaagat
     1921 cgctacctag tctttggcaa tgaccatcag aaatttatcc atgataatct catttccatt
     1981 gacttcacgg acggaactgt tttgcgtaag cctagcaaac atagtacctc gatcagtggc
     2041 acagatggaa accatttcta tacagcaggt gcttatcata cgcttgcgca atttgataag
     2101 cagtttgaat ccattcagac gcttgtcctc aatgacgact tcataccaaa tgctccagtc
     2161 atggcagacc aaacgtcagt ctatttaact ggctttgtga aagattttac ccaagaagga
     2221 cccgaggaaa atgtcttagt ggtttttgat aagaaagatt tttcaaagca agaggtattt
     2281 aagtacgaca ataccattgc aacaggcgat ggactgttga tcaatggaac catctatctc
     2341 ccaaatttag ggaaaaaaac aagtgaatat gaggacattg aacagtcttc cgaactcctg
     2401 acattcgata cgcgttccaa aacattttca tccatcaagc tggaacaccc ttcaccaagc
     2461 accctccatg ctctcaaaga cgaaaacctt cttctcatcg agcatcaaaa tggcatgttt
     2521 agcccacttt cctttactat ttacaatacc caaactggcg agcaatccta ccatactttg
     2581 aaggacttaa atcctcgtcc tcactacatc gaccatatcc gtcaaatcga tgacaagcgc
     2641 ttaatgatta ttttggcaaa tcaactcctt atctatgata tggaggctaa gagcattatc
     2701 agccagacca ctctgtctga agactacgtt tctggagttt ggatcaatcc ataaaataaa
     2761 gaactcggct cagagagccg agttctttat tcttcatctt gtaaatccac acttggcacg
     2821 gttgtcgccg catcatttgt tgcctggaag agctctactt tttcatatcc gaatagacct
     2881 gcgtagattg aggtcgggaa ccgcttgatt tttttattgt aggcagttgc caccgcatta
     2941 taatccttgc gggcaactaa aatccgattt tcagtcccct ctagctcggt aatgaggtcg
     3001 gatacctgtt gattggctgt taattgcgga taattttccg tcaccatcaa caagcgagaa
     3061 acagccgaat ccagctgact ttgggcttga ttgtagtcac tggtccctac ttggctagag
     3121 ccgattttcg cacgcgcatc cgcaatggca gtaaaaatct cttcctcatg ctccatagct
     3181 cctttaaccg ctgccacgac attcggtatt agatcatagc gccgttggag ttgggtgtcc
     3241 acattggctt gggcattttc cacttctgca tggctatcga ccagtccatt atattgaccg
     3301 attgccccca ttcctaaaaa tagcagagcg aaaactggga ttagtatggc taaccatttc
     3361 tttttcataa atattttcct ttcttaccaa ccagatgagg ctccgccacc gcca
//
LOCUS       DASGAC010000188         3387 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.190, whole genome shotgun sequence.
ACCESSION   DASGAC010000188 DASGAC010000000
VERSION     DASGAC010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3387)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3387)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3387
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.190"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            446..1666
                     /locus_tag="U1335_001954"
     CDS             446..1666
                     /locus_tag="U1335_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEM5232403.1"
                     /translation="MLENWLNTKQGQVFHYKMEKIEYALELLGNPQFAVSIIHVAGTN
                     GKGSTIAFMRQLFQTHGLRVGSFVSPHMVSVHDRICIDSQPISDHDFQHYLQKVYDLE
                     QEVVTRYEPFRYFEVMVLIMFLYFKDQQLDVALVEVGIGGLLDTTNVVAPALSVITSI
                     GMDHQDLLGSTLREIAEQKAGIIKENMPVVLGPLSQETTAICRQIAQDKQASVHQFGQ
                     EFTYKAGQFSNMDIDLLELVLGLAGYHQEENAAVALQTFLLYMTNIQKDIQPQLIQQA
                     LAQTSWPGRLELVVQEPKIYLDGAHNVPAIERLLEFIQVQEEPVTILFSALRRKDFQE
                     MLELLEEKLPHTALVLTSFAYDGALSEENRQGRDYVENYQQFIEDWQSSKQGILIVTG
                     SLYFISEVRRIFKK"
     gene            1856..3379
                     /locus_tag="U1335_001955"
     CDS             1856..3379
                     /locus_tag="U1335_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol oxidase"
                     /protein_id="HEM5232404.1"
                     /translation="MTELDVVSDVVTHPEETYRRSRRASRRQQVQLNSEFHERVLKTK
                     YWPALVWSLVLSIFSVANPLLMPFATNIQTQNLYAGMAMANGQIPYGDFFGTSGLLFY
                     LLAFLGHLGGTFIIFGILQFIALLIAGVYFYKIVAYFSQSEHLATSSSHWFYVFIFAL
                     GFGGMYAEVFALPFLLTSVWFLVRYFENAVRDEAFILYGIDAALVFLIYPKSLILWLV
                     AGLVLFIFNIQHRQVTRGIYQLLATIFGFLLILYAVGYYAFEAQILGTAIQQTFLYNL
                     QLDFHHSYLYLALAIVSVFLLLSGFFKSFIQMVFSFKQGRHTYIKVLLLLTFLVQCVF
                     IIGNANFQWSQLILLLPYGFAMSVVYLRDEDVEDYRGYLRRQFFLPLAICLGIIAQPA
                     YLYLLQGDLRTDREQVANYIGEQTKDSDKIYVWDNSASIYLSSQRLSAATITTAEPYL
                     NTDDNKNSLMYDINKNEAKFVVVNKTLPILDEIKTNLESQYHSVQTTDYFTIYQKNE"
BASE COUNT          993 a          630 c          691 g         1073 t
ORIGIN      
        1 caagctggtg gaatttttaa cattcacctt gttcaaaaag ccaacatctg ttaggctttt
       61 ttgttatact agacagtata taggaggtgg ctatgttaga aaattggtta aataccaaac
      121 aaggccaggt gcttcattac aagatggaga ggactgagga tgctctgggg tggttaggta
      181 atccatattt aagttgttag aattagaaat agattggtag caagacagtc tgttatgtga
      241 catttttgtc ctgttgaaaa aagttttcaa gttgtaaaat agttttatca aatgaaggag
      301 atagagcaat gattacaatt tttacaaaag tttttccatt tggagatttc tcaacaagct
      361 ggtggaattt ttaacattca ccttattcaa aagccaacat ctgttaggct tttttgttat
      421 actagacagt atgtaggagg tggctatgtt agaaaattgg ttaaacacca aacaaggtca
      481 ggtgtttcat tacaagatgg aaaagattga gtatgcccta gaactgctag ggaatcccca
      541 gtttgcagtt tcgatcattc atgtcgctgg aaccaatggc aagggatcga caattgcctt
      601 tatgcgccag ctctttcaga ctcacggctt gcgtgtcggt agttttgtat ctccccacat
      661 ggtgagtgta cacgacagga tttgtattga cagccagccc atttcagacc atgattttca
      721 gcactattta cagaaagtct acgacttgga gcaggaagtc gtcactcgtt atgagccttt
      781 tcgctatttt gaggtcatgg tactcattat gttcctctat ttcaaggacc aacagctcga
      841 tgtggcacta gtagaggtgg gcatcggcgg acttttggat acgaccaatg tcgtggcacc
      901 agccctaagc gtaatcacct ccatcggcat ggatcatcag gatttactag gctcgacttt
      961 aagggaaata gcagagcaga aagcagggat catcaaagaa aacatgcctg tcgtcttagg
     1021 accactttct caagaaacca cagccatctg tcgccaaatt gcccaagaca aacaagcctc
     1081 tgtccaccaa tttggtcagg aatttaccta caaagcagga cagttcagca atatggacat
     1141 cgacctgtta gaattagttc tgggtctggc aggctatcat caagaagaga atgcggccgt
     1201 agccctacaa acttttctac tctatatgac caatattcaa aaagacattc aacctcagtt
     1261 gattcaacaa gcccttgccc aaaccagctg gcctggtcgt ttggaattgg tagttcaaga
     1321 gccaaaaatc tatttggatg gagcccacaa tgtcccagct atcgaacgtt tgcttgaatt
     1381 tattcaggtt caagaagagc ctgtcaccat tctcttttcg gcccttcggc gcaaggactt
     1441 tcaagaaatg cttgaattat tagaagaaaa attaccacat actgcccttg tattaaccag
     1501 ctttgcttat gatggtgcct tgtctgagga aaaccgacaa ggacgagatt atgttgagaa
     1561 ttatcagcag tttatagaag attggcaatc tagcaagcaa gggattttga ttgtcacagg
     1621 ctctctctac tttatctcag aagttcgtcg gatttttaaa aaatgaatat cttttgcgaa
     1681 taaataggta tgacacatgc agaaaaagta gcctttttaa aagaatttca agagaacaaa
     1741 cgccatacct ttcgccagtt agaacagttt gcaaaaattt ccagaactcc cgataggaaa
     1801 tgacatcggg agtgcttttt gatataataa ggaaagcaaa tccaaggaga agaaaatgac
     1861 agaattagat gtagtttcgg acgtagttac tcatcctgag gaaacttatc ggcgtagtcg
     1921 tagagcatca cgcagacagc aagtgcaact gaacagtgaa tttcatgaaa gagtattaaa
     1981 gacaaagtat tggccagctc ttgtttggag cttagtttta agtattttta gcgtagccaa
     2041 tccactgcta atgccatttg caaccaatat acaaactcaa aatttatatg cagggatggc
     2101 aatggcaaat ggacaaatcc cttatggtga tttctttggt acaagcgggt tattattcta
     2161 tttacttgct ttcttaggtc atctgggagg aactttcatt atctttggaa tcctccagtt
     2221 tatagcatta ctgatagcgg gagtctattt ctataagatt gtagcttatt ttagccagtc
     2281 agaacaccta gcgacaagtt ctagtcattg gttctatgta tttatttttg cacttggttt
     2341 tggagggatg tatgcagaag tgtttgctct tccgtttctt ttgactagtg tgtggtttct
     2401 ggtccgctat tttgaaaatg cagtacgtga tgaggcattt atcctctacg gaatcgatgc
     2461 ggcattggta tttttaattt acccaaaaag tctaatcctt tggttagttg cgggtctagt
     2521 tttatttatt tttaatatcc aacaccgcca agttactcga ggaatctatc aattattagc
     2581 gaccattttt ggttttcttc tgattctata tgcggtaggt tattatgctt ttgaggcgca
     2641 gattctgggg acagctattc aacaaacttt cctttataac ttacagttag actttcacca
     2701 ttcctatcta tatttagcct tggcgattgt gtctgtattt ttactcttat ctggattctt
     2761 taaaagtttc atccaaatgg tattttcttt caaacaagga agacatacct atatcaaagt
     2821 tctcctatta ttgactttct tagttcaatg tgtctttatt attgggaatg caaactttca
     2881 atggagccaa ctcattcttc ttttaccgta tggttttgcg atgtcagtcg tttacctgcg
     2941 tgatgaggat gtagaagatt atcgtgggta tttgcgtcgt caattctttc ttccgttagc
     3001 tatttgcttg ggtattatcg ctcaacctgc ttatctttat ttgttacagg gagatttaag
     3061 aactgaccgt gaacaagttg ccaattacat tggtgaacaa acgaaagatt cagataagat
     3121 ttatgtttgg gataatagcg caagtatcta tctttcaagt caacgtttat ctgccgcaac
     3181 gattactaca gcagaaccct atctgaatac tgacgacaat aaaaatagct tgatgtatga
     3241 catcaataaa aatgaggcaa aatttgtagt cgtcaataag actttgccaa ttctagatga
     3301 aatcaagaca aatttagaat cacaatacca ttctgttcag acaacggatt actttacgat
     3361 ttatcaaaag aatgaatgat tgctcag
//
LOCUS       DASGAC010000189         3370 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.191, whole genome shotgun sequence.
ACCESSION   DASGAC010000189 DASGAC010000000
VERSION     DASGAC010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3370
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.191"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..>3370
                     /locus_tag="U1335_001956"
     CDS             <1..>3370
                     /locus_tag="U1335_001956"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012956.1,HMM:NF037639.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEM5232405.1"
                     /translation="ANETAVISQGNTTQTGNSLTFQNLQPGIYVLKEVTPPSGYIQVD
                     PVRLEITQAGQLQVLSGDTELLQVGASSGNTLELTVKNDSKKTLRISKRIKGLESLAG
                     LITGNMTFTLSKDNDTSFRPVTVTQAANEDFVFNNLTYGSYTLVETAPPAGYMAEPIT
                     YKVSVSRSGVSLYKVANAAPSERVAGATLIKSGDLSNIQSGQDGNAIDGNDTTAVTYS
                     NFNGQGDNIPAGAYLGVDLQGVKRVRHIHYLQGNQNNPLDRFNRFTLEYSIDGRTYFP
                     LSTYTANGLVELDTDIVARYIRVRNEDRVEQKWYAVRELTVSAQATETVGALSTGQYP
                     IGNIQHPQIQVEKRDMSNARINQSVTFKLYKVDDATTTANAAAAIQESNLVQTFTLTN
                     GQVSQALQAKVLGRYALVEVAPPTGYRALAGPVLLDLTTAQETHSGSQMKTVSRFSLV
                     DANDKVTIDTATANVLKIFVKNELITYNLLIKKRDLNNTETGLNARFELYDANETAVI
                     SQGNTTQTGNSLTFRNLRPGTYVLKEVTAPTGYNPIQKIKLTISLDGQITIVEGPQDL
                     LEGQAVNANNEIELVVKNRPFTDFSIEKVSNLDPTSNLAEVQLQIKAKNNGPAPLFSD
                     DNWHIQHYRATIDTANKALTWWTQSNDVGNAVFKLPQGTYTISELSAPAGYELLQPFD
                     IIVGEDGQVRLADGAPTNAEINTKDNRLNLKLTNIFKPKLKIIKVDSRDENRKLENAT
                     FKLFGEDGRTQVGSDLVTGTTGEVEIPALTPGTYYLQETQSPAGFQTNGTKYKLIIAA
                     DGTTTVENGDDLIAVAPLSTDKVIQITVKNKVKTYRLKVKKRDYDNPTNGVSGARFAL
                     YPSEGPNEDGSNKVQVLINGRMTALEGSSYSHLDNTIDFPNIPPGEYVLRETQAPAGY
                     EKIKDTRLRIGEDGRLTILDSDPTLLSVETGQGDTLTVIAKNLRTFNFQIKKVDSANE
                     TTLLDNARFSIYKTDVNWTKGDTALAQGVTSAGIYQINLEHGYYILKEEQAPSGYLLN
                     QKEYRFQINHDGSILLHNPDETVSLSRADANRLILFTMKNTRSTTSIKLAKRAYSDSD
                     RRLAAVFELKEENGATPVATETTKTEGEEVVFDNL"
BASE COUNT         1049 a          778 c          755 g          788 t
ORIGIN      
        1 atgcaaatga aacagccgtg attagtcaag gcaataccac gcagacagga aatagcctta
       61 ccttccaaaa tctgcagcca ggtatctatg tcttgaaaga agtgactccg ccatcaggct
      121 atatccaagt agatccagtt cgacttgaaa tcacgcaggc aggtcaatta caagtcctgt
      181 caggagatac agagcttcta caagttggtg catcaagtgg caatacgctt gagctcacgg
      241 tgaaaaacga cagtaagaaa acccttcgca tttccaaacg catcaagggt ctggaaagct
      301 tagctggtct cattacagga aacatgacct ttacgctgtc aaaagacaac gacacaagtt
      361 tccgaccagt gactgtcaca caagctgcga atgaagactt cgtctttaat aacctgacct
      421 atggttctta tacccttgtt gaaacagcgc caccagcagg ctatatggcc gagccgatta
      481 cctataaggt atctgtgagt cgctcaggag tttctctcta taaagtagcg aacgcagctc
      541 cgagcgaacg tgtcgcaggt gcaaccctca tcaagtcagg cgacttatcg aatatccagt
      601 ctggacaaga tggaaatgcg attgatggta atgacacgac agcagttacc tactcaaact
      661 ttaacgggca aggcgataac attcctgctg gagcctatct aggggttgat ctacaaggtg
      721 tgaaacgtgt ccgtcacatt cactacttgc aaggtaatca gaacaatccg ctggatagat
      781 tcaaccgctt cacacttgag tactcaatag acggacgcac ctatttccca ctgtccactt
      841 atacagccaa tggattggtt gagttggata cggatatagt ggctcgttac attcgtgtga
      901 gaaatgaaga ccgagtagag cagaagtggt acgctgtccg tgaattgacc gtctcagctc
      961 aagctacaga aaccgttggt gcattatcaa ctggtcaata tccaattggc aatatccagc
     1021 atccacagat tcaagtggaa aaacgagata tgagtaacgc tcggattaac cagtctgtga
     1081 cctttaaact ctataaggtg gatgatgcga cgacaactgc gaacgctgca gcagccattc
     1141 aagaaagcaa tctcgtccaa acctttacat tgacaaacgg tcaagtaagt caggctttac
     1201 aagccaaggt actgggtcgt tatgcccttg tcgaagtcgc accaccaact ggttatcgtg
     1261 ctttagctgg tccagtctta ctagacttga caaccgcaca agagacacac agcggaagtc
     1321 agatgaagac agtgagccgc tttagcttag ttgatgcgaa tgataaggtt acaattgaca
     1381 ccgctactgc aaatgtattg aaaatcttcg tgaaaaacga attgattacc tacaatttgc
     1441 ttatcaagaa acgcgacctg aataatacag aaaccggcct caacgctcgc ttcgaactct
     1501 acgatgcaaa tgaaacagcc gtgattagtc aaggcaatac cacgcagaca ggaaatagcc
     1561 ttaccttccg taatctgcga ccgggcactt acgtcctcaa agaggtcaca gccccaacag
     1621 gctacaatcc gatccagaaa atcaaattga ccatcagtct agatggacaa attacgattg
     1681 tggaaggacc acaagacttg ttggaaggtc aagctgtgaa tgccaataac gagattgaac
     1741 ttgtcgtcaa gaacagacca tttacagatt tcagtatcga aaaggttagc aatctagatc
     1801 cgacgagcaa tttggctgag gttcagttgc aaatcaaggc aaaaaataat ggaccagctc
     1861 cgctatttag cgatgataat tggcatatcc aacattatcg agcaacgatt gataccgcaa
     1921 acaaagcctt gacatggtgg acccaatcca atgacgttgg caacgctgtc ttcaaacttc
     1981 ctcagggaac gtatacgatt agtgagttgt ctgcaccagc tggttacgaa ttgcttcaac
     2041 cgtttgatat tattgttgga gaagatggtc aagttcgatt ggcagatggt gcgccaacca
     2101 atgcggagat taataccaaa gataacagac tcaacctcaa attgaccaac atcttcaaac
     2161 cgaaactgaa gattatcaag gttgatagca gggatgagaa ccgcaaactt gaaaatgcaa
     2221 cctttaaact ctttggtgag gatggacgca cgcaggttgg aagtgacttg gtgacaggaa
     2281 cgactggtga agtagagatt ccagccttga caccgggtac ctactatcta caagaaaccc
     2341 agtccccagc aggcttccag acaaatggaa ccaagtacaa actgatcatt gctgcggatg
     2401 gcacaacaac tgtagagaat ggcgatgacc ttattgctgt cgcaccgctc tctacagaca
     2461 aagtcattca aatcacggtg aaaaacaagg tgaagaccta tcgtttgaag gttaagaagc
     2521 gagactatga taatccaact aacggagtat ctggtgctcg atttgctctc tacccatctg
     2581 agggaccaaa cgaagatggt agcaataagg tgcaagtgct catcaatggt cgtatgacag
     2641 cccttgaggg tagcagctat tctcatttag ataatacgat tgattttcca aatatcccac
     2701 caggtgagta tgtccttcgg gagacacaag caccagcagg atatgaaaaa atcaaagata
     2761 ctcgactgcg gattggagag gacggtcgac tgaccattct tgattcggat ccaactcttc
     2821 tatctgttga gaccggacaa ggcgacacgc ttacggttat tgccaaaaac ctccgtacgt
     2881 ttaacttcca aatcaaaaag gtagatagtg caaacgagac aactcttcta gacaatgctc
     2941 gcttctctat ctacaagaca gatgttaact ggacaaaagg ggatacggca ttggctcaag
     3001 gtgtgacaag tgctggtatc tatcagatta atcttgaaca cggatactat attctgaagg
     3061 aagaacaggc tccatctggc tatctactca atcagaagga gtaccgtttc cagattaacc
     3121 atgacggctc tatccttctt cataatcctg acgagacggt atcattgtct cgagcagatg
     3181 caaatcgcct catactcttc accatgaaga acacacgctc gaccacatcc atcaaactag
     3241 ccaagcgtgc ctatagtgac agcgaccgtc gtctcgctgc ggtgtttgaa ctgaaagaag
     3301 agaatggtgc aactcctgtt gctaccgaga cgacgaagac tgagggagaa gaagtggtgt
     3361 tcgataacct
//
LOCUS       DASGAC010000190         3306 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.192, whole genome shotgun sequence.
ACCESSION   DASGAC010000190 DASGAC010000000
VERSION     DASGAC010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3306)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3306)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3306
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.192"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..3223)
                     /locus_tag="U1335_001957"
     CDS             complement(<1..3223)
                     /locus_tag="U1335_001957"
                     /inference="COORDINATES: protein motif:HMM:NF019202.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1542 domain-containing protein"
                     /protein_id="HEM5232406.1"
                     /translation="MNRSKKKSFDWYGARQRFSIRKYHIGAASVLLGTTLVLGTGTIV
                     GAETGVNGGTSNGQIVPGNGTGTSDGTQPQGDNQGDNSSGVQTGNTTNSTANVQPAGG
                     TSSASGQPVGTSRSANTGTQGDGTTNPTVDEPVIKFPTTVNDPVPEGYVLVAFIKPEY
                     GAKYVFEGLQGEFPNAPAQLIELRKLQLEVRFWVKEGTTWGQLFETPEWRWPKINPVS
                     GDVFIDWNYGYGNRNRFDSNKMKDQLVTTSYFIPMLNYEVEEIEPSNASVEAFLAWYS
                     PEGRSKWFIVSFDAGQGSMTYKSKQYTSRSVAVYYQNIGYDNNQFTSKVVSPTLDGHT
                     FVRWQTEDGKVLPTTGTITSTEVYKALYLAHPQNKVAVFDSTKLTDSEKEQVKQKIYD
                     ANPNLSTGVPQVIKAIEISATGEATVTFDDGTAVKVPSATLTNEDKATARSNAKAEIE
                     KDAMEKSAAINASNLTEEEKRARLTEVRDVQDRADIAIDNAATTEDLTKAISDGTAAI
                     EAVSTTSTIKTKAKEALEEAYNTKKDEIDNSSLTAEEKSAKQEELDQAKSAADSAIDT
                     ATDDAGVGTALNKGKADIEAIGTIISDKKIAARQQLEDAYSAKETEITNSNLTLEEKA
                     TKLAELDKAKEDAENAIDTATDNAGVDAALEAGKTAIAGIDTSTSAKKAQAKQDLETA
                     YNAKKDEIANSSLTAEEKATKLAELDKAKEDAENAIDTATDNAGVAKALEDGKATIDA
                     INTSTSAKKAQAKKDLEAAYNAKKAEIENSALTAEEKAAKQAELDKAKADADKAIDAA
                     TDNAGVAKALEAGKAAIDAINTTTSAEKTAAKKDLEAAYNAKKAEIENSALTAEEKAA
                     KQAELDKAKETADKAIDVATDASGVAKALEAGKAAIDAINTSTSAEKAQAKKDLEAAY
                     NAKKAEIENSALTVEEKAAKQAELDKAKADADKAIDAATDASGVAKALEAGKAAIDAI
                     NTSTSAEKAAAKKDLEDAYNAKKAEIENSALTAEEKSAKQAELDKAKADADKAIDAAT
                     DNTGVAKALEDGKSAIDAINTTTSAEKAAAKKDLEDAYNAKKEE"
BASE COUNT          736 a          752 c          595 g         1223 t
ORIGIN      
        1 tctcttcttt cttagcgtta taagcatctt ctaagtcttt cttagcagct gctttctcag
       61 cacttgtagt tgtattgatt gcatcaatcg ctgatttacc atcttcaaga gctttagcta
      121 cacctgtatt atctgttgct gcatcaattg ctttatctgc gtcagcttta gctttatcta
      181 gttctgcttg tttcgctgat ttttcttcag ctgtaagggc agaattttca atttctgctt
      241 tcttagcgtt ataagcatct tctaagtctt tcttagcagc tgctttctca gcacttgtgc
      301 ttgtattgat tgcgtcaata gctgctttac cagcttcaag agctttagct acacctgaag
      361 catctgttgc tgcatcaatt gctttatctg cgtcagcttt agctttatcc aattctgcct
      421 gtttcgctgc tttttcttca actgtaaggg cagaattttc aatttctgct ttcttagcgt
      481 tgtaagctgc ttctaagtct ttcttagctt gagccttctc agcacttgtg cttgtgttga
      541 ttgcatcaat cgctgcttta ccagcttcaa gagctttagc tacacctgaa gcatctgttg
      601 ctacgtcaat agctttatct gcagtctctt tggctttatc caattctgct tgtttcgctg
      661 ctttttcttc agctgtaagg gcagaatttt caatttctgc tttcttagcg ttgtaagctg
      721 cttctaagtc tttcttagca gctgttttct cagcacttgt agtcgtattg attgcatcaa
      781 tcgctgcttt accagcttca agagctttag ctacgcctgc attatctgtt gctgcatcaa
      841 ttgctttatc tgcgtcagct ttagctttat ccaattctgc ttgtttcgct gctttttctt
      901 cagctgtaag ggcagaattt tcaatttctg ctttcttagc gttgtaagct gcttctaagt
      961 ctttcttagc ttgagccttc ttagcacttg tgcttgtatt gattgcgtca atcgtcgcct
     1021 taccatcttc aagagcttta gccacacctg cattatctgt tgctgtgtcg atagcatttt
     1081 cagcatcttc tttagcttta tccaattctg ctagcttggt tgctttttct tcagcggtca
     1141 aggatgagtt tgcaatctca tctttcttag cattgtaggc tgtttccaag tcttgcttag
     1201 cttgagcctt cttagcactt gtgcttgtgt cgattccagc aatggctgtt ttgccagctt
     1261 caagtgctgc gtctacacct gcattatctg ttgctgtgtc gatagcattt tcagcatctt
     1321 ctttagcttt atccaattct gctagcttgg ttgctttttc ttctaaagtt aagtttgagt
     1381 ttgtaatctc agtttcctta gcagagtatg catcttcaag ctgttgtcta gcagcaatct
     1441 tcttatcact tattatcgtt ccaatcgctt cgatatcagc tttaccctta ttgagtgctg
     1501 tgcctacacc tgcatcatct gttgctgtgt caattgcgct gtctgctgcg gatttggctt
     1561 ggtctagttc ttcctgtttc gctgattttt cttctgcagt caaggatgag ttatcaatct
     1621 catctttctt agtattgtag gcttcttcaa gagcttcctt agcttttgtt tttatagtac
     1681 tagttgtgct aactgcttca atcgctgctg tcccatccga aatagcctta gttaagtctt
     1741 cagtagtagc agcattatca attgcaatat cagctcggtc ttgtacatct cgaacttccg
     1801 tcagtctagc tcttttctct tcttcagtga gatttgaggc attgatggca gcactctttt
     1861 ccattgcatc tttttcaatt tctgctttgg cattgcttct agcagtagcc ttgtcttcgt
     1921 tagtaagagt tgcggatgga actttaactg cggtaccatc atcaaatgtt acagtagctt
     1981 caccagtagc ggatatctca atcgctttga tgacttgcgg aacccctgta cttaaattag
     2041 ggtttgcatc atatatcttt tgcttgacct gttctttctc ggaatctgtt aactttgtac
     2101 tatcaaatac agctaccttg ttttgtggat gtgcaagata taatgccttg taaacttcag
     2161 ttgatgtaat agtacctgtt gttggtaaaa ctttaccatc ttctgtttgc caacgaacaa
     2221 aggtatgtcc atccaacgta ggacttacaa ccttactagt aaattgattg ttatcataac
     2281 caatattttg gtaataaaca gctacagaac gtgaagtgta ttgtttgctc ttataagtca
     2341 ttgaaccttg tccggcatca aaacttacaa taaaccattt acttcgtcct tctgggctat
     2401 accatgccaa gaaagcctca acgctagcat tagatggctc tatttcttca acttcataat
     2461 taagcatagg tataaagtag gaagtagtaa ctaactgatc tttcatttta ttggaatcaa
     2521 aacgattacg attgccataa ccatagttcc agtcaataaa aacatctcca ctaacagggt
     2581 ttattttcgg ccaacgccac tcgggtgtct caaatagttg tccccaagtg gttccctcct
     2641 taacccagaa tctcacctct aactgaagtt ttctaagttc aattaattgt gcaggggcat
     2701 ttgggaattc tccttgcaac ccctcaaata catattttgc tccgtattca ggttttataa
     2761 acgcaacaag aacataccct tcaggaactg gatcatttac cgttgtcgga aatttgataa
     2821 ccggttcatc tacagttggg ttagtcgtac catctccttg tgttccagta tttgctgaac
     2881 gtgaggttcc tactggttgg ccacttgctg aacttgtacc acctgcaggc tggacattcg
     2941 cagttgagtt tgttgtatta ccagtctgaa ctcctgagct attatctcct tgattatccc
     3001 cttgtggctg cgtgccatcg gatgttccag taccatttcc aggtacaatt tgcccatttg
     3061 aagttccccc attgactcct gtttcagcgc ctacaatcgt tcctgtacca agaaccaagg
     3121 tcgtacctaa cagaacactt gcagcaccaa tatgatattt acggatagag aaacgctggc
     3181 gcgctccata ccaatcaaat gatttctttt tcgaacgatt catatcgtca ctccttttga
     3241 ataaatatta ccagagaaaa aagaagcgtt caaaaaatca gttttcccta gtttcaagtc
     3301 accaag
//
LOCUS       DASGAC010000191         3304 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.193, whole genome shotgun sequence.
ACCESSION   DASGAC010000191 DASGAC010000000
VERSION     DASGAC010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3304)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3304)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3304
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.193"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(660..1859)
                     /locus_tag="U1335_001958"
     CDS             complement(660..1859)
                     /locus_tag="U1335_001958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEM5232407.1"
                     /translation="MAKLTVKDVELKGKKVLVRVDFNVPLKDGVITNDNRITAALPTI
                     KYILEQGGRAILFSHLGRVKEEADKEGKSLAPVAADLAAKLGQDVAFIAGATRGAELE
                     AAINALEDGQVLLVENTRFEDVDGKKESKNDEELGKYWASLGDGIFVNDAFGTAHRAH
                     ASNVGISANVEKAVAGFLLENEIAYIQEAVETPERPFVAILGGSKVSDKIGVIENLLE
                     KADKVLIGGGMTYTFYKAQGIEIGNSLVEEDKLDVAKALLEKANGKLILPVDSKEANA
                     FAGYTEVRDTEGEAVSEGFLGLDIGPKSIAKFDESLTGAKTVVWNGPMGVFENPDFQA
                     GTIGVMDAIVKQPGVKSIIGGGDSAAAAINLGRADKFSWISTGGGASMELLEGKVLPG
                     LAALTEK"
     gene            complement(2116..3126)
                     /gene="gap"
                     /locus_tag="U1335_001959"
     CDS             complement(2116..3126)
                     /gene="gap"
                     /locus_tag="U1335_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008090210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEM5232408.1"
                     /translation="MVVKVGINGFGRIGRLAFRRIQNVEGVEVTRINDLTDPVMLAHL
                     LKYDTTQGRFDGTVEVKDGGFEVNGKFVKVSAEREPGNIDWATDGVDIVLEATGFFAS
                     KEKAEQHIHANGAKKVVITAPGGNDVKTVVFNTNHDILDGTETVISGASCTTNCLAPM
                     AKALHDAFGVQKGLMTTIHAYTGDQMVLDGPHRGGDLRRARAAAANIVPNSTGAAKAI
                     GLVIPELNGKLDGAAQRVPVPTGSVTELVATLDKKVTAEEVNAAMKAAATESFGYTED
                     QLVSSDIVGISFGSLFDATQTKVIEVDGEQLVKVVSWYDNEMSYTAQLVRTLEYFAKI
                     AK"
BASE COUNT          951 a          761 c          615 g          977 t
ORIGIN      
        1 gcaaatacct gccctgcttt tcttttctcc taagctcgac tggaaaagcc tcctgttcac
       61 gccagcattt cgaaaaaaca ataatctgcc actttaaatc agctgcaaga aggaacccag
      121 aagtaagaca aacaaataga cgctgcaaaa aaacaacgtc tttttttaca tttatatttt
      181 tgcgcagtag ctgaatggga gttgtgacca agattcagtc ttaaggggtt caaatagccc
      241 agtggactat ttgaagttgt caccaagaaa aatcaaagta acaatctacg gagtcatttt
      301 tgacagaagc ttcgcttctt ctatttctaa cctcaacata tctgggagat atgttgaact
      361 gactcaccgc ctatttctca gtcaaggcag cacctagcca gtctttctag gtcacacttc
      421 ccagaaagac ttggcatggc actaggcact ccgtgccgtc gcaagacctg gaatagactt
      481 tctaactcgc ttagcttcgt agaaactcta cgcgatgcac tagaaaagag ttggtctccc
      541 aactcttttc atcgttcata cgcagtagct gaatggcagt tcactttgct acgcttgtga
      601 ccaacctatt cagccttgcg ggggtgcgtc tacggaatca tagattcctg acttaccgcc
      661 tatttttcag tcaatgctgc gagaccaggc aacactttac cttcgaggag ttccattgat
      721 gcaccaccac cagttgagat ccatgagaac ttgtctgcac ggccaaggtt gatcgcagct
      781 gccgctgagt caccaccacc gatgattgat ttcacgcctg gttgtttcac gatagcgtcc
      841 attacaccga ttgtaccagc ttggaagtct gggttttcaa atacacccat aggaccattc
      901 caaacaactg ttttcgcacc agtcaacgat tcgtcaaact tagcgattga cttaggaccg
      961 atgtcaagac caaggaagcc ttctgaaact gcttcacctt ctgtatcgcg aacttcagta
     1021 tatccagcaa atgcgttagc ttcctttgag tcaactggca agatcagttt accgtttgct
     1081 ttttcaagaa gtgcttttgc cacatcaagc ttgtcttctt ctacaagtga gttaccgatt
     1141 tcgatacctt gagctttgta gaatgtgtaa gtcataccac caccgataag aactttgtca
     1201 gctttttcaa gaaggttctc gataacaccg atcttatcag atacttttga accaccaagg
     1261 attgccacga atgggcgctc tggagtttca acagcttctt ggatgtatgc aatttcgttt
     1321 tccaaaagga aaccagctac tgctttttct acgtttgctg agataccaac gtttgatgcg
     1381 tgtgcacggt gtgcagtacc aaatgcatcg tttacgaaga taccatcacc aagtgaagcc
     1441 cagtatttac caagttcttc gtcgttttta gattctttct taccatcaac atcttcgaaa
     1501 cgagtgtttt caacaaggag aacttgtcca tcttccaaag cattgatagc tgcttctaat
     1561 tcagcaccac gagtagcacc tgcgatgaaa gcaacgtctt gacccaattt agctgccaag
     1621 tcagctgcca caggagccaa tgatttacct tctttgtcag cttcttcttt cacacgacca
     1681 aggtgagaga aaagaattgc acgtccacct tgctcaagaa tatacttgat agttggaaga
     1741 gctgctgtaa tacggttatc gttagtgata acgccatctt tcaaaggcac gttgaagtcc
     1801 acacgaacaa gaactttttt gcctttcaat tctacatctt taacagtcaa ttttgccatt
     1861 agataagaac tccttaaatt atatttactt taccattgta tcatattttc tgtatttttt
     1921 cttgcataaa gatatttttt tcacaaatgt tatgaaatct aaaaactatc gcctcgtaat
     1981 cagatttttc aaattctaaa gttgccaaat cagaaacaac ttataccatc cttgtttctt
     2041 agcataagga aacagctata tttcagcaat caaaacaaaa aaagaggccg aagcctcttc
     2101 gattttcact aaggattatt tagcgatttt tgcgaagtac tcaagagtac gaacaagttg
     2161 tgcagtgtaa gacatttcgt tgtcgtacca tgaaacaact ttaaccaatt gctcgccatc
     2221 aacttcgata actttagttt gagttgcatc aaacaatgaa ccgaatgaga tacctacgat
     2281 atctgaagat acgagttggt cttcagtgta accaaatgat tcagtagcag cagctttcat
     2341 agcagcgttt acttcttcag cagttacttt cttgtcaaga gttgcaacca attcagttac
     2401 agaacctgtt ggaactggaa cacgttgtgc agcaccgtca agtttaccgt tcaattctgg
     2461 gattaccaag ccgatagctt tagcagcacc agttgagtta ggaacgatgt ttgcagcagc
     2521 agcacgtgca cgacgaaggt caccaccacg gtgtggtccg tcaagaacca tttggtcacc
     2581 agtgtaagcg tggattgtag tcatcaaacc tttttgaacg ccaaatgcat cgtgaagagc
     2641 tttagccatt ggtgccaaac agtttgtagt acatgaagca cctgagataa ctgtttcagt
     2701 accatcaagg atgtcgtggt tagtgttgaa aacaacagtc ttaacatcgt taccaccagg
     2761 agcagtgata acaacttttt tagcaccgtt agcgtggatg tgttgctcag ctttttcttt
     2821 agaagcaaag aaacctgtag cttccaaaac gatatctacg ccatcagtag cccagtcgat
     2881 gtttcctggc tcgcgctctg cagaaacttt aacgaattta ccgttaactt caaaaccacc
     2941 atctttaact tcaacagtac cgtcgaaacg accttgagtt gtgtcatatt tcaacaagtg
     3001 tgcaagcatt actggatctg taaggtcgtt gatacgagta acttcaacac cttctacgtt
     3061 ttggatacga cggaaagcaa gacgaccgat acgtccgaaa ccgttaatac caactttaac
     3121 taccatgaat gatttcctcc ttatgaaaat cgagttcttt attttaaaag gcaagccttt
     3181 taatcctttt gtgaaaatat taacttgtaa gcctacaagc atcttttcaa cgtttttatt
     3241 atataactat ttaccgaaaa ttgcaagagt ttgcatactt aaatcatgtc cacatacctt
     3301 ttct
//
LOCUS       DASGAC010000192         3285 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.194, whole genome shotgun sequence.
ACCESSION   DASGAC010000192 DASGAC010000000
VERSION     DASGAC010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3285
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.194"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            100..522
                     /gene="lacA"
                     /locus_tag="U1335_001960"
     CDS             100..522
                     /gene="lacA"
                     /locus_tag="U1335_001960"
                     /EC_number="5.3.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002982747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-6-phosphate isomerase subunit LacA"
                     /protein_id="HEM5232409.1"
                     /translation="MTIIIGADPAGSKLKDVIKDYLQEKSYDFKDVSDGSDFVDTTLA
                     VVAAVNQEEGNLGIVIDAYGVGPFMTATKVKGMIAAEVSDERSAYMTRGHNNSRIITI
                     GSEIVGEGIAKNIVKGFVEGEYDGGRHQIRVDMLNKMC"
     gene            549..1064
                     /gene="lacB"
                     /locus_tag="U1335_001961"
     CDS             549..1064
                     /gene="lacB"
                     /locus_tag="U1335_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-6-phosphate isomerase subunit LacB"
                     /protein_id="HEM5232410.1"
                     /translation="MKIAIGCDHIVTYEKIAVVDYLKNQGYEVLDFGTYDNVRTHYPI
                     FGKKVGEAVASGQADLGICICGTGVGINNAVNKVPGVRSALVRDMTSALYAKEELNAN
                     VIGFGGKITGELLMCDIIEAFIKAEYKPTEENKRLIEKIAAVETLNQEQANPEFFTEF
                     LEKWDCGEYHD"
     gene            1074..2006
                     /locus_tag="U1335_001962"
     CDS             1074..2006
                     /locus_tag="U1335_001962"
                     /EC_number="2.7.1.144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016250260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-6-phosphate kinase"
                     /protein_id="HEM5232411.1"
                     /translation="MILTITLNPSVDIAYQLDTFHLDTVNRVEKVQKTAGGKGLNVTR
                     VLKQIGEDVVATGFIGGEIGNYVKKQLTRNDIKNSFVEIGNETRNCIAVLHDGKQTEI
                     LEQGPTIHEHEALNFIEHLEIILNNVDVVVISGSLPKGLASNYYVEIVERCKKYGVAV
                     VLDCSGEALKNVLESQQKPTVIKPNTEELSQLIGKEVTDDIQELKSVLSGQLFQGIDW
                     IVVSLGAQGAFAKHNDKFYRVRIPKIKVVNPVGSGDSTVAGIAASLVHTLPDTELLKK
                     ANVLGMLNAQEEQTGYVNLENAESLYSQIEVEEV"
     gene            2008..2985
                     /gene="lacD"
                     /locus_tag="U1335_001963"
     CDS             2008..2985
                     /gene="lacD"
                     /locus_tag="U1335_001963"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase"
                     /protein_id="HEM5232412.1"
                     /translation="MVVTADKRKYMEKVSNEAGIISALAFDQRGALKKMMAKHQTEEP
                     TVEQMEELKKLVSEELTQFSSSILLDPEFGLPASRARDEQCGLLLAYEKTGYDTSSTS
                     RLPDCLVEWSVKRLKEAGADAIKFLLYYDVDGDPYVNLQKHAYIERLGSECQAEGLPF
                     FLEILSYDETIEDNASVEFARVKPRKVNEAMKVFSDERFGVDVLKVEVPVNMNFVEGF
                     GAGEVVYTKEEATEYFRQQEASTHLPYIYLSAGVSAKLFQDTLVFAHEAGAKFNGVLC
                     GRATWAGVVPVYIEQGEGAAREWLRTVGRENIEGLDAVLSQTAASWLEK"
     gene            3173..>3285
                     /locus_tag="U1335_001964"
     CDS             3173..>3285
                     /locus_tag="U1335_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017770255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator lact"
                     /protein_id="HEM5232413.1"
                     /translation="MFRIIQSLNNNAALVKNEHGEQAVVMGLGITFQKKKG"
BASE COUNT         1079 a          509 c          760 g          937 t
ORIGIN      
        1 ttaaacataa aaagcgaaaa cgctttttct aagttttgca aaacaaagat tttctgccac
       61 atatggctac aactttctat ttttgttagg agataggtta tgacaatcat tatcggtgct
      121 gatccagcgg gctcaaaact aaaagacgtt attaaagatt atttacaaga aaaatcatat
      181 gactttaaag atgtcagtga tggaagtgat tttgttgata caactttggc agtagttgca
      241 gcagtcaatc aagaggaagg aaatcttggg attgtgattg atgcttatgg tgttggtcca
      301 tttatgaccg caactaaagt caaaggcatg atcgctgcag aagtttcaga cgaacgttct
      361 gcctatatga caagaggaca caacaattcg cgtattatta caatcggtag tgagattgta
      421 ggagaaggaa ttgctaaaaa tatcgttaaa ggatttgttg aaggtgagta tgatggtggc
      481 cgtcaccaaa ttcgtgtcga tatgctaaat aaaatgtgct aattgttgta aacgaaggag
      541 aataagagat gaaaattgca atcggttgtg accatattgt aacctatgaa aaaatcgctg
      601 tggtagatta tttgaaaaat caaggatatg aagtattgga ctttgggact tatgacaatg
      661 ttcgtactca ttacccaatc tttggtaaaa aagttggtga agctgttgca agcgggcaag
      721 cagatttggg aatttgtatt tgtggaacag gtgttggaat caacaatgct gtaaacaagg
      781 tacctggtgt tcgatcagcc ctggttcgtg atatgacctc tgcactctat gcaaaagaag
      841 agttaaatgc caacgtcatt ggttttggag gaaagattac aggtgagttg ctcatgtgcg
      901 acatcattga agccttcatt aaagcagaat acaaaccaac tgaagaaaac aaacgtttga
      961 ttgaaaagat tgctgcagtt gaaacgctca atcaagagca agctaatcca gagttcttta
     1021 cggaatttct tgaaaagtgg gattgtggag aatatcacga ctaggaggct ctcatgattt
     1081 taacaatcac tttaaatccg tcagttgata ttgcctatca attggatacc tttcatctgg
     1141 atacggtcaa tcgagtagaa aaagttcaaa aaacagctgg aggcaagggg ctcaatgtta
     1201 cacgagtttt gaaacaaatc ggtgaagatg ttgtagcaac aggctttatt ggcggcgaga
     1261 ttggaaatta tgtaaagaaa caactcactc gaaatgatat taaaaattcc tttgtggaaa
     1321 ttgggaacga aacacgtaac tgtattgcgg ttcttcatga tggcaaacag acggagattt
     1381 tagaacaagg cccaactatt catgaacacg aagccttgaa ttttatcgaa caccttgaaa
     1441 ttattctgaa caatgtagat gttgttgtta tttcaggaag tttgcctaag ggacttgcta
     1501 gcaattatta tgttgagatt gtagaacgtt gtaaaaaata cggtgtagct gttgttttgg
     1561 attgttctgg tgaggcgctg aaaaacgttt tagaaagcca gcagaagccg acagttatta
     1621 agccgaatac agaggagtta tcacaactga ttggtaaaga agttactgat gatattcaag
     1681 agttgaaatc agttttgtct ggtcaacttt tccaaggaat tgattggata gtcgtctcat
     1741 taggagcaca gggggctttt gccaagcaca atgacaagtt ctatcgtgtc agaattccaa
     1801 aaatcaaagt cgtcaatcca gtgggatcag gagattcaac tgttgcaggt attgcagcta
     1861 gtttggtaca taccttacct gatacagaat tacttaaaaa ggctaatgtt ttgggcatgc
     1921 taaatgccca ggaagaacag acgggttatg tcaatttaga aaatgcagaa tcgttgtatt
     1981 ctcaaatcga agtcgaagag gtataatatg gtagtaacag cagataaaag aaaatacatg
     2041 gaaaaagtaa gcaatgaagc aggtattatt tcagctttag cttttgacca acgtggagcc
     2101 ctgaaaaaaa tgatggcaaa acatcagaca gaggaaccta ctgtggagca gatggaagaa
     2161 ctaaagaaac tagtttcaga agaattaaca cagttttctt cctcgattct gttagatcct
     2221 gaatttggtt tgccagcatc acgcgcccgt gacgaacagt gcggtttgct tctagcttat
     2281 gaaaaaactg gctatgatac aagctctact agtcgcttac cagattgcct agtagagtgg
     2341 tctgtaaaac gactaaaaga agcaggggca gatgctatca agttcttact ctactatgac
     2401 gttgatggtg atccatacgt caatcttcaa aaacatgcct atattgaacg cttgggttca
     2461 gaatgtcagg ctgaaggttt accattcttc ttagaaattt tgagctatga tgaaacgatt
     2521 gaagacaatg ccagcgtgga atttgcaaga gtcaaacctc gaaaagtaaa tgaggctatg
     2581 aaagtatttt cggatgaacg ctttggagta gatgttctca aggtagaagt acctgtgaac
     2641 atgaattttg tagaaggctt tggagcaggg gaagtcgtct atacaaaaga agaagcaaca
     2701 gaatatttcc gtcaacaaga agcatcaact catttgccat acatttatct aagtgcaggt
     2761 gtttctgcta agcttttcca agatacacta gtatttgcac atgaagcagg tgctaaattt
     2821 aacggtgttc tctgtggtcg tgcgacgtgg gcgggtgttg taccagtcta tattgaacaa
     2881 ggtgaaggag ctgcgcgtga atggttacgt actgttggtc gtgaaaatat tgagggactt
     2941 gatgcagtct tgtctcaaac agcagcttct tggctagaaa aataattgaa aaaacaacca
     3001 ctttcttaaa agaaagggtt tacattttct gagaatatgc tataataatc tcatcagtaa
     3061 gaatagagtg gattgtaact aattcgatta ggcaagacta caaatggatt tgagagtagg
     3121 atattctcgg tttgtttgta gtcttttttg cttaaaaata taggagggat atatgtttag
     3181 gattatacag tcactaaata ataacgctgc cctggtgaaa aatgaacatg gggaacaggc
     3241 agtcgtgatg ggattaggta taacctttca aaagaagaaa gggga
//
LOCUS       DASGAC010000193         3272 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.195, whole genome shotgun sequence.
ACCESSION   DASGAC010000193 DASGAC010000000
VERSION     DASGAC010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3272
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.195"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(179..513)
                     /locus_tag="U1335_001965"
                     /pseudo
     CDS             complement(179..513)
                     /locus_tag="U1335_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909823.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3307 domain-containing protein"
     gene            complement(517..1185)
                     /locus_tag="U1335_001966"
     CDS             complement(517..1185)
                     /locus_tag="U1335_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SatD family protein"
                     /protein_id="HEM5232414.1"
                     /translation="MNYIAIIGDIVNSKQTSNRSSIQERLKQQLNRINHSFAQDFASP
                     FTITKGDEFQALCKPNPYIFLIIDQIQLAFRDEVEIRFGIGLGEILTAIDPELSIGAD
                     GPAYWEARKAIDFIHDNHDYGTSKIAFSSEYKQIDRVINPLLTSSDFIKATWNRSQTD
                     LFETLISQKIYQEDFTQKPIAEKMKLSQSAFTKRLKSSGIKLYLRNRQTAMNLILQLS
                     QKEG"
     gene            complement(1378..2955)
                     /gene="ffh"
                     /locus_tag="U1335_001967"
     CDS             complement(1378..2955)
                     /gene="ffh"
                     /locus_tag="U1335_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000863601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEM5232415.1"
                     /translation="MAFESLTERLQSVFKNLRRKGKISESDIQEATKEIRLALLEADV
                     ALPVVKDFIKKVRERAIGHEVIDTLNPAQQIIKIVDEELTAVLGSETSEIIKSPKIPT
                     IIMMAGLQGAGKTTFTGKLANKLKQEENARPLLIAADIYRPAAIDQLKTLGQQIDVPV
                     FELGNQVPALEIVRQGLEQAKANHNDYVLIDTAGRLQIDQALMAELREIKEFAQPNEI
                     LLVVDAMIGQEAANVAREFNDQLAITGVILTKIDGDTRGGAALSVRHITGQPIKFTGT
                     GEKITDIETFHPDRMSSRILGMGDMLTLIEKASKEYDEKKSLELAEKMRENTFDFNDF
                     IDQLDQVQNMGPMEDLLKMIPGMAGNPALANLKVDEREIARKRAIVSSMTPAERENPD
                     LLTPSRRRRIANGSGNSFVEVNKFIKDFNQAKTMMQGVMSGDMNKMMKQMGINPNNLP
                     KNMPNMNGMDMSALEDMMGGAGMPDMSQLMGGGAGMPDMSQMFGGGLKGKIGEFAMKQ
                     AMKRQANKIKKAKKKRK"
     gene            complement(2968..>3272)
                     /locus_tag="U1335_001968"
     CDS             complement(2968..>3272)
                     /locus_tag="U1335_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="putative DNA-binding protein"
                     /protein_id="HEM5232416.1"
                     /translation="ALFEFYAALLTDKQMNYIELYYADDYSLAEIAEEFQVSRQAVYD
                     NIKRTEKLLEDYEMKLHMYSDYVVRSQIFDEMLNKYPEDAYLKEKIAILTSIDNRE"
BASE COUNT          900 a          654 c          661 g         1057 t
ORIGIN      
        1 aataataatc ttatcggttt tagtcgctaa atcaaatact attttataag tactctgtcg
       61 ccaaacggaa taatcttgaa aattttcagg acatacagtc tgaggtaatt gatgttgtaa
      121 gaaatcacct agtaattcgg gatcatagag atatgagttt tctattcgtt tgtgtaatat
      181 atttgctaaa gtagagtttg aaaagaatat tgacgggctt gctgatcaga aggataaaaa
      241 ggatttgcag gaggagataa tttggttcaa tccagagtga gtgtgaagcg acattaacac
      301 cgatagtgtg ataaagaatg atgattgaga tgatatgtag caattgatca gctaggaatg
      361 ctccagcttc ccaggagtcc tttatccaat ggtgtttgtt gagaaaatat ttgacatagt
      421 caatcgcaag atgactcagc caaagtgggc aataagcaag gcggttaaaa ctggatgttg
      481 aataagatag ctagaaatga ctgaaaatga catgctttag ccttctttct gactgagctg
      541 gagaatcaaa ttcatggcag tttgacgatt acgcaggtag agtttgattc cgctggattt
      601 caaacgtttg gtaaaggcgc tttgactgag tttcattttc tcagcaattg gcttttgtgt
      661 gaaatcttct tgatagattt tttgggagat taaggtctca aacagatccg tttgcgaacg
      721 attccaggta gctttgatga aatcgctaga agttagtaag gggttaatca cacgatcgat
      781 ttgcttgtat tcagatgaaa atgcaatttt gctggtgcca tagtcatggt tgtcatgaat
      841 gaagtcaata gccttgcgtg cttcccaata agctggacca tctgctccaa tacttagctc
      901 gggatcgata gctgttagaa tctcacccaa accaattcca aatcgaatct ccacctcatc
      961 acgaaaggct agttggattt ggtcaattat taaaaaaata taagggttag gcttgcataa
     1021 ggcttgaaat tcatctccct ttgtaatggt aaatggcgat gcgaagtcct gagcgaagga
     1081 atgattgatt ctattcagct gctgttttag ccgctcttga atactagagc ggttggaagt
     1141 ttgttttgaa ttgacaatat ctcctattat tgcgatataa ttcataactt gtcctctaat
     1201 ttctgttata tttccattat aatggacaat ataaagattg tccactaaaa aggacatttt
     1261 cgattatttc tgttataacg gaaagtgttg gagttcaaaa atcatttttt ctgctttgct
     1321 acttctattt ttatcgctat atcttacttc ttcgaataaa aagtaaaaaa gaagagatta
     1381 ttttctcttc tttttggctt tcttgatttt attggcttgg cgcttcatgg cttgtttcat
     1441 agcaaactca ccaattttac ctttcaaacc gcctccaaac atttgggaca tgtctggcat
     1501 accagctcct cctcccatca gttggctcat atcaggcatg cctgcaccgc ccatcatatc
     1561 ttccagagca gacatatcca taccgttcat gtttggcatg tttttaggga gattatttgg
     1621 gttgattccc atttgtttca tcattttgtt catgtcgcct gacatgacac cctgcatcat
     1681 ggttttcgct tggttgaaat ccttgataaa tttattgact tcgacaaagc tatttccaga
     1741 accgttagca atacgacgac gacggctcgg tgtcaacaaa tcagggtttt ctcgttcggc
     1801 tggtgtcata gaagatacga tagctcgttt tcgtgcaatt tcacgctcgt caactttcaa
     1861 gttggcaagt gctgggttac cagccatacc tggaatcatc ttcagcaggt cttccattgg
     1921 tcccatattc tgaacttggt ccagctgatc aatgaaatcg ttgaaatcaa aggtattctc
     1981 acgcattttt tcagcgagtt ctagtgattt cttctcatca tattctttgc tggctttttc
     2041 aatcaaggtc agcatgtcac ccatgcccag aatacgcgag gacatacggt ctgggtggaa
     2101 ggtttcgatg tcagtgattt tttcaccagt accggtgaat ttgattggct gaccagtaat
     2161 gtgacggaca gacaaggctg caccaccacg tgtatcgccg tcaatcttgg tcaaaatcac
     2221 accagtaata gccagttgat cattgaactc acgcgcaacg ttggcagctt cctgaccaat
     2281 catagcatcg acgaccaaga ggatttcgtt tggctgagca aactctttga tttctcttag
     2341 ttcagccatg agggcttggt caatctgcaa acgaccggcc gtatcaatca gaacgtagtc
     2401 attatgatta gctttggctt gttctaaacc ttggcgtaca atctccaggg cagggacttg
     2461 attgcccaac tcgaatacag gtacatcaat ttgttgacca agggtcttca attggtcaat
     2521 ggcagctgga cggtaaatat cggcagcaat caagagtggg cgggcattct cttcctgctt
     2581 gagtttatta gccaacttac ctgtgaaggt cgttttacca gccccctgca atccagccat
     2641 cataatgata gttggaattt ttggtgattt gataatttct gaagtttcag aacctaatac
     2701 agccgtcaat tcttcatcaa cgattttgat gatttgttga gcagggttca gagtgtcaat
     2761 aacttcatga ccaatggcac gttcacgtac tttcttgatg aaatctttta caactggaag
     2821 agcaacgtcg gcttctagta aggccagacg aatttccttg gttgcttcct gaatatcact
     2881 ctcagaaatt tttcccttac gacgtaggtt tttaaagaca ctttgcaagc gttctgttaa
     2941 gctttcaaaa gccatatact tctcctctta ctctctatta tcaatactgg ttagaatggc
     3001 gattttctcc ttcaaataag catcttctgg atacttattc agcatttcat cgaaaatctg
     3061 actacgcacc acatagtcag aatacatatg cagtttcatc tcataatctt ccagtaattt
     3121 ttctgttcgt ttaatgttat catagaccgc ctgacggctg acttgaaatt cctcagcaat
     3181 ctcagccaaa ctataatcat ctgcataata tagctcaatg tagttcattt gcttgtctgt
     3241 cagcaaggct gcatagaatt caaataaggc at
//
LOCUS       DASGAC010000194         3267 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.196, whole genome shotgun sequence.
ACCESSION   DASGAC010000194 DASGAC010000000
VERSION     DASGAC010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3267)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3267)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3267
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.196"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            65..3217
                     /locus_tag="U1335_001969"
     CDS             65..3217
                     /locus_tag="U1335_001969"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232417.1"
                     /translation="MKRKKKYKYDYKCRQKLMLLVGATTMAVGAVTVGQVQSVHAEET
                     KPEPIVTDLKDSSSQTTSPTTGEEGQLSLSQTGNTDSAEDLQETEAGLSEPKEDQAGV
                     STERSVPEGRTLIIETSEQPAPIITDISVNAEDEREYSKANVGLEITFEQVEQPTVVT
                     HKLINKDSGEAYVKTATIEKQPHYRYTEIDTSIPETRQTAFTYFEKVPAGTYRLEIGL
                     TDLESKPYELDAASLEKINNLSDIVIKPYVETNKKFVEPNLVEVRVDKATVKKGENVV
                     YTLVYDGLPEVSYGVMLKDFDYSVFSAEYDKTGKQTGRSVLHISEKFSEAGEKKLEFD
                     TSYGYFSTKDWKKQVEISEGNRNKLAQLMPTVTVLDEDYKHIEIISLTHIRADGSRSE
                     LAALDPSWSHSINAPSDDSGQYYHNRVLHKLQVGDQLVYKVRLSPEYLSELKKRKSEQ
                     SYTESVSLEFDRVFNVRALGGTAYEFDERDSLYLSSDKWETGEVDMTFIVKDYMHGYL
                     NLNRLGSGAYDDYHLAFGGYLFQIENPNYSSPILSEIEKSEKIYIGENAPIKVKASKS
                     SLFSSGTIKLDFDIQPTSGDFEDSFDYYLHVEQDYSNPSGPVATGWLTGYLFDSVTEK
                     HIGSYSLKRAEVYLDGWVEEITDLPNWTLDISGDKVFKSNFLLSGEERTQVGSIGRSW
                     VYGSLGRLPKELQNRRLGVNKIQFYDRQGNSLPTVKADWVLSEYELREGERLYYYLPS
                     TGELTELKPVLEDGRRLVKGSKDSKGLYVFAMALEEDGAQPTENVVGTTKVLSGPVED
                     VYVSFSEADVSTVKSIQVAKVEDATVLEKLPESFKREDVDMFDIKTLDKDGQFVQIQS
                     SKGAFVTLPVSPNRKVTKVIYYLPQTGAVEELEYEWDKTFNIVSFNVTHFSNYGIVYE
                     ALPKENTSPVDTEVPAPTTSPVSTDSPVQPVTPTVATSLTSANLVKVADKLVNEAQAS
                     QSKEKVHRSELGQLANSPSLASSSAEIQPVSSSSQTENKGKTSSSVLPNTASQTGVIH
                     TMVGLALSSLAMLVYGKKEE"
BASE COUNT         1032 a          548 c          796 g          891 t
ORIGIN      
        1 gctatccatc agaaaggaga agaaaggata gtttatatat aactaatata aaaggagcaa
       61 tagtatgaaa agaaaaaaga aatacaagta tgattataaa tgtcggcaaa aattgatgtt
      121 gctagtggga gctacgacga tggctgtagg tgcggtgaca gtggggcagg tgcagtctgt
      181 ccacgcagaa gagacaaaac cagaaccaat tgttaccgat cttaaggata gctcctcgca
      241 gacaacaagc ccgactactg gtgaagaggg acaactaagc ctatctcaga ctggaaatac
      301 agattctgca gaagatttac aggaaacaga agcaggtctt tctgaaccta aggaagatca
      361 ggctggggtg tcaacagaga gaagtgtgcc ggagggaaga acccttatca tagaaacttc
      421 cgaacaacct gcgccaatca taacagatat ctctgtgaat gcagaggatg agagagagta
      481 tagtaaggcg aatgttggtc ttgaaattac tttcgaacag gttgaacaac caacggtcgt
      541 gacccataag ctaatcaata aagatagtgg cgaggcctat gttaaaacag caacgattga
      601 aaaacaacca cactatcggt atacggagat tgataccagt atcccagaaa cacgccagac
      661 tgcttttaca tattttgaga aagtgcctgc aggaacctat cgtctagaaa tcggtttgac
      721 agatttggaa agtaagccct atgaattgga tgcggctagt cttgagaaga taaacaatct
      781 gtcagatatt gttattaaac cgtatgttga aacaaataag aaatttgtag agccaaatct
      841 agtagaggtt agggttgata aggcgactgt gaaaaaagga gaaaatgttg tctatacctt
      901 ggtctatgat ggcctgccgg aggtttctta tggggttatg ctgaaggact ttgattatag
      961 cgtttttagt gccgagtatg ataagacagg taagcagaca ggacgttccg tacttcacat
     1021 ttcagagaaa ttttcagagg ctggagagaa gaaattggaa tttgatacca gttacggtta
     1081 cttctctaca aaagattgga agaaacaggt agagattagt gaagggaata ggaataagtt
     1141 ggctcaactg atgccgacag tgacagttct agatgaagac tataagcata tcgaaatcat
     1201 ttccttaacc catattcgtg cggatggaag tcgaagtgaa ctggctgctc ttgatccatc
     1261 ttggagtcac tccatcaatg ccccttctga tgattcaggt caatattatc ataatagagt
     1321 cttgcataag ctccaagtag gagatcagct tgtttataag gtgagattaa gtcctgagta
     1381 cttgtcagaa ttgaagaaga gaaagagcga acagagctat acagaaagtg tttctttgga
     1441 gttcgataga gtatttaatg tgcgggcttt aggtggcact gcctatgaat ttgatgaaag
     1501 agatagtctg tatctcagct cagacaaatg ggaaacaggt gaggtagata tgacctttat
     1561 agtcaaagac tatatgcatg gctatctgaa cttaaatcgc cttggttcgg gggcctatga
     1621 tgactatcat ttggcttttg ggggttattt attccagatt gaaaatccta actatagctc
     1681 gccaatttta tcagagatag aaaaatctga gaagatttat attggtgaaa acgctcctat
     1741 aaaagtaaag gcttcgaagt cgagcttatt ctcgtctgga acaattaaat tagactttga
     1801 tattcaacca acttcgggag attttgagga ttcatttgac tactacttac atgtagaaca
     1861 agattattcc aatccatcag gtcctgttgc gactggttgg ctaactggtt atctgtttga
     1921 ttccgtgaca gaaaaacaca ttggcagtta ttctttaaaa cgtgctgagg tttatttaga
     1981 tggttgggta gaggagatta ccgatctccc aaattggact ttggacataa gtggggataa
     2041 ggtttttaaa tccaatttcc ttctatcagg ggaggagcgg acacaggttg gttcaattgg
     2101 acgtagttgg gtatatggtt cgttagggcg tttgccaaaa gagttgcaaa atcgtcgttt
     2161 aggtgtgaat aaaattcaat tctatgaccg tcaaggaaat agtttgccga cagtgaaggc
     2221 tgactgggtg ctgtctgagt atgaattgag agagggagaa cgcctttatt actacttgcc
     2281 ttctacagga gaattgacag aattaaaacc agtcttggaa gatggtcgcc gattggtgaa
     2341 gggaagtaag gatagtaagg gtctttatgt atttgcgatg gcgctagagg aagatggggc
     2401 acaacctacg gagaatgtgg tcggtacgac caaggttctg tctggtccag tcgaggatgt
     2461 ttatgtaagc ttttcagagg cagatgttag cactgtaaag agcattcaag ttgccaaggt
     2521 agaggacgcc actgtcttgg aaaaattacc tgagagtttc aagcgtgaag acgtggatat
     2581 gtttgacatt aagacccttg ataaagatgg tcaatttgtt caaatccagt caagtaaggg
     2641 tgcctttgtt accctgcctg tttcaccaaa tcgtaaggta accaaggtga tttactactt
     2701 accacaaaca ggtgcagtag aagagttgga atatgagtgg gataagactt ttaatattgt
     2761 atcctttaat gttactcact tttctaatta tggaattgta tatgaagctc ttccaaaaga
     2821 aaataccagt ccagttgata cagaagttcc ggctccgacg actagtccag tttcaacaga
     2881 tagtcctgtt cagccagtca caccaacagt cgcaacaagt ttgacctcgg ctaatcttgt
     2941 taaggtagcg gataaattag taaatgaggc acaggcgagt caatccaagg aaaaagttca
     3001 tagatctgag ctagggcagc tagccaacag tccgtccctt gctagtagtt cagctgagat
     3061 acagcctgtt tcttctagtt ctcaaactga aaataaaggt aagactagtt cgtccgtctt
     3121 accaaataca gctagccaaa caggtgtgat acataccatg gtgggactgg ctctgtcttc
     3181 attggctatg cttgtatatg gtaaaaaaga agagtaagga ctttgaatac tgataggaag
     3241 cttagatttt attgggggat taaaaaa
//
LOCUS       DASGAC010000195         3134 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.197, whole genome shotgun sequence.
ACCESSION   DASGAC010000195 DASGAC010000000
VERSION     DASGAC010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3134
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.197"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..783
                     /locus_tag="U1335_001970"
     CDS             <1..783
                     /locus_tag="U1335_001970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232418.1"
                     /translation="EIGMSKDRKNENNFQHLEGELGKYLERKELDDKKSKSSYLFLMI
                     GFLVLVISGFLYKKSLDTPVETYKDLTSYVESIRQVEAKPFSWTYEEFEALDAQHSAA
                     SKTRVEDIIKKYGAPTSLETSIYSSEYESLRLLYQTEQPELLFVDFGGQLTLAAKMSS
                     NLFPEPYEDIVGENSHDWTSQEFNNLRVGASNGEGGVSLDEVLSTYGPVYAAESFGTV
                     DYWTIRIQYLNHETSDNIFLDFTKDGEGEYQLSQKHKEVRNW"
     gene            790..1596
                     /locus_tag="U1335_001971"
     CDS             790..1596
                     /locus_tag="U1335_001971"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232419.1"
                     /translation="MAKNTSLKKIEELERVSKDTVDQSASNQWMRWVEFGLPLVLISV
                     AILYLLIGKSTATRNQNNQVEDQVMESVSRTHSYLDEIEGAKSAKPFDWTVGKYDAMK
                     IDAEVENSMTLAEFTQEYGLADSYEESTMNSDGSSVVTATYHSEDFGQDVTFWFNMSN
                     GAYRIYQKIFYNLVDENYPEATDENFVFKWDQATIDALALDQSPEEIMEQYGLPTYAR
                     QNGMQDYRQLGMMYQEDNDPESTINSIHLVFMQNDQGEYRLKSKEGVFRD"
     gene            1593..2432
                     /locus_tag="U1335_001972"
     CDS             1593..2432
                     /locus_tag="U1335_001972"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232420.1"
                     /translation="MKNKQKKSVKQDTYTKLSEAVKAEFEREYQESFKKKQKATYYLL
                     IAFVLLVLAGLVWTAQQPAKEEVATYSPSSESTDQQLSSTISQTWTESSDKGVTDFTR
                     GLTATKEEFSFNWTLKDYDSLVIGMKEDTTGDSLSDIIEKYGKPSSARFDEYSEEYLF
                     LTYAALDYDIYADRRRLELAFYKNGSEYYLSSKEVYYLPDEKFPTKEADTNTNLWTND
                     VFQQVIVGDSNTGQGGMSYEEVIALGGLPYEATVSAYGGGLYEEKNSFKFFTKMAWVQ
                     SNL"
     gene            complement(2554..>3134)
                     /locus_tag="U1335_001973"
     CDS             complement(2554..>3134)
                     /locus_tag="U1335_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HEM5232421.1"
                     /translation="QKTIQVLSILTLIGTAIFLFWLYKIGILNDQNVLSDLIKSQGAL
                     GSLSFLAIQIIQVVFPIIPGGVTTVVGFLVFHFWWGFFLNYLGISIGSIILFWLARRY
                     GKKFCLLFMSEDTFYKYESKIDNKRSYEIFFVLCMLSPISPADIVVMITGLTSMSYRK
                     FIMITLLCRPFSVVAYSFFWIYGSQFLQQFLQ"
BASE COUNT         1106 a          491 c          685 g          852 t
ORIGIN      
        1 gagattggaa tgtctaaaga tagaaagaat gaaaataatt ttcagcattt agaaggtgaa
       61 cttgggaaat atctagaaag aaaagagcta gatgataaga aaagtaagtc cagctacttg
      121 tttttgatga ttggtttcct tgttctagtg attagtggat ttctctataa aaagagtctc
      181 gatacacctg tagagactta taaagattta acaagctatg ttgaaagtat tagacaggta
      241 gaagcgaaac cattttcttg gacctacgag gaatttgaag cacttgacgc acaacattct
      301 gcagcttcaa aaacaagagt tgaggacatt atcaaaaaat atggggctcc gacatcgctt
      361 gaaacttcta tatactccag tgaatatgaa tcgctgagat tactatacca aacggaacag
      421 ccagaattgc tttttgttga ttttggtgga caattgactc tagctgcaaa aatgagcagt
      481 aatctttttc ctgaacctta cgaagatata gttggggaga atagtcatga ctggacgagt
      541 caggagttta ataacttgcg tgtcggtgca agcaatggtg agggaggtgt ctcgctggat
      601 gaagtacttt ctacatatgg tcctgtttat gcagcggaaa gtttcggtac tgttgattat
      661 tggactatca ggattcagta tctaaaccat gaaacaagtg ataacatttt tcttgatttt
      721 acaaaggatg gggaagggga gtatcaattg tctcaaaaac acaaagaggt cagaaattgg
      781 taaaagtgaa tggcaaagaa tacgagttta aagaaaatag aagaattgga gcgggtaagt
      841 aaggatacag tagatcagtc agccagtaat cagtggatga gatgggttga atttggacta
      901 ccgcttgtat tgattagtgt agccattctc tatctattga ttgggaaatc gactgcaacc
      961 aggaaccaaa ataatcaggt tgaggatcag gttatggaat ctgtttcacg aacgcattct
     1021 tacctagatg agattgaagg agcaaagtca gctaagccat ttgattggac cgttgggaaa
     1081 tatgatgcta tgaaaattga tgcagaagta gagaactcta tgacgttggc agaattcaca
     1141 caagagtatg gactggctga tagttatgag gagtctacca tgaacagtga tggtagttca
     1201 gttgttacag ctacctacca cagtgaagat tttggtcaag acgttacttt ttggttcaac
     1261 atgtcaaatg gagcttatcg aatttatcaa aaaattttct ataatttagt ggatgaaaac
     1321 tatccagaag caacggatga aaattttgta tttaagtggg atcaagccac aattgacgca
     1381 ctagccttgg atcaaagtcc tgaagaaatc atggaacaat atggattgcc gacctatgct
     1441 cgacaaaatg ggatgcaaga ctatcgtcaa ttagggatga tgtatcagga agataatgat
     1501 ccagaatcta ctataaattc cattcattta gtttttatgc aaaatgatca aggagagtat
     1561 agattaaaat ccaaggaagg agtctttaga gattgaagaa caagcaaaaa aagagtgtaa
     1621 aacaggatac ctataccaaa ctatcagaag cagtgaaagc agagtttgaa agagagtacc
     1681 aagaatcgtt caagaaaaag cagaaggcta cttattatct tttgatagcg ttcgtattgt
     1741 tggtattagc agggttagtg tggactgccc aacaacctgc aaaagaagaa gttgccacct
     1801 attctccaag ttctgagagt acggatcaac agttatcatc aactatcagt caaacttgga
     1861 cggaatctag tgacaaaggc gtgacagact ttacgcgcgg attgactgct acaaaagaag
     1921 agtttagctt taattggaca ctgaaagact atgatagctt ggtaattggg atgaaagagg
     1981 atactacagg ggacagtttg tcagatatca tcgagaaata tgggaaacct tcatcggcta
     2041 gattcgacga atattcagaa gaatacttat tcttaactta tgctgctttg gactacgata
     2101 tctatgcaga tcggcgaagg cttgaattag ccttctataa aaatggttca gaatactatt
     2161 tatcaagtaa ggaagtctac tacttaccag acgagaaatt cccaacgaag gaagcagata
     2221 caaatacgaa tttgtggacc aatgatgtgt ttcagcaagt catcgtagga gatagcaata
     2281 caggacaagg cgggatgagc tatgaagaag tgattgcttt gggagggctt ccttatgaag
     2341 ctactgtgtc tgcttatggt ggaggtttgt atgaagaaaa aaacagcttc aaatttttta
     2401 caaaaatggc ttgggtgcaa agcaatcttt agtagatttt cgatttgttc gacaaaaaga
     2461 tggaatttac agagtatacg caaaaaatgg aaccttttat aactaaggtc atcactaaaa
     2521 aatcctcatc taaacgcata gatgaggata ttttcattgt aagaattgtt gtaaaaattg
     2581 gctgccatag atccaaaaga agctataggc cacaactgag aaagggcgac aaagtaaagt
     2641 aatcataata aatttccgat agctcatgct tgttaatcca gtaatcatca ccactatgtc
     2701 agctggagaa atgggagaaa gcatacaaag aacaaagaaa atttcataac tacgtttatt
     2761 atcaattttg ctttcatatt tgtaaaacgt atcttcagac atgaagagaa gacaaaattt
     2821 ctttccatag cgacgagcca accagaaaag gatgatacta ccgattgaaa ttccaagata
     2881 attgagaaag aatccccacc aaaaatgaaa tacgaggaaa cctacaacag tcgtaacacc
     2941 gcctggaata atcggaaata caacttgaat aatctgaata gctaaaaagg agaggctacc
     3001 taaagcacct tggcttttga ttaaatcgct taagacattt tggtcgttca aaatgccaat
     3061 cttatagagc caaaacagaa aaatagcagt cccgataagg gtcaaaatac ttaatacttg
     3121 aatggttttt tgcc
//
LOCUS       DASGAC010000196         3102 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.198, whole genome shotgun sequence.
ACCESSION   DASGAC010000196 DASGAC010000000
VERSION     DASGAC010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3102)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3102)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3102
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.198"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(348..1283)
                     /gene="dapA"
                     /locus_tag="U1335_001974"
     CDS             complement(348..1283)
                     /gene="dapA"
                     /locus_tag="U1335_001974"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEM5232422.1"
                     /translation="MSIQDLRDVKIITAMITPFKEDGAINYDVLPDLVEHLLAHHTEG
                     ILLAGTTAESPTLTHAEELELFAAVQKIVNGRVPLIAGIGTNDTRDSIEFAKEVAAFG
                     GFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVEMTPETMLRLAE
                     HPNIIGVKECTSLANMAYLIEHKPEDFLIYTGEDGDAFHAMNLGADGVISVASHTNGD
                     EMYEMFTAIEQQDIRTAAAIQRKFIPKVNALFSYPSPAPVKAVLNYMGFEVGPLRLPL
                     VPCPEEDAKRIIKVVVDGDYEATKATVTGVVRPDY"
     gene            complement(1345..1617)
                     /locus_tag="U1335_001975"
     CDS             complement(1345..1617)
                     /locus_tag="U1335_001975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232423.1"
                     /translation="MNDNIAKKMGQRPKVQIFFSTVLGLVVAVYGFIIRQDLLVWEET
                     GGEKLLPRFIYWIYSLVGATGVALTFLAVSMIFFVNSYRIFKKLKA"
     gene            complement(1642..2718)
                     /locus_tag="U1335_001976"
     CDS             complement(1642..2718)
                     /locus_tag="U1335_001976"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000542485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEM5232424.1"
                     /translation="MAYVVAVVGATGAVGAQMIKMLEESTLPIEKVRFLASARSAGKT
                     LQFKGQDIVIEETTETAFEGVDIALFSAGGSTSAKYAPYAVKAGAVVVDNTSYFRQNP
                     DVPLVVPEVNAHALDNHNGIIACPNCSTIQMMVALEPVRQKWGLERIIVSTYQAVSGA
                     GMGAILETQAQLRSVLNDGVEPKAVEANILPSGGDKKHYPIGFNAIPQIDLFTENDYT
                     YEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEIAPIDEVKAAIAAF
                     PGAVLEDDVANQIYPQAINAVGSRDTFVGRIRKDLDKENGIHMWVVSDNLLKGAAWNS
                     VQIAETLHERGLVRPTAELKFELK"
BASE COUNT          920 a          715 c          591 g          876 t
ORIGIN      
        1 acaaagaaaa cacctgaatg acatcaagtg cttcttggag attatatgaa aaagatggtt
       61 ttattataaa actactagct taaataaagt taaaagaata aaaataatga agatactcta
      121 gacatgtaat aagaatttcc tcttcaaatt caactctcta gatggctagc tgaaacagtt
      181 ccccgaacag gcttcgcttt cgtattttca ggctcgggtc ttctatggtc actttcgtat
      241 ttcttggtga ccagctgaaa cagttccccg aactgtttca ctcccccaga cattgctcgc
      301 tctcttattt caaggctcac gttaaaatag tcactcccct gactatttta ataatccggt
      361 cttacgactc ctgtcacagt ggctttggtt gcttcgtagt cgccgtcaac gactactttg
      421 ataatgcgtt tagcatcttc ttctggacat ggaaccaacg gcaagcggag cggaccaact
      481 tcaaatccca tatagttaag aaccgcctta actggtgcag gacttggata ggagaagagg
      541 gcattgactt tcggaatgaa cttgcgttga atagcggctg ctgttcgaat atcttgttgt
      601 tcgatggctg taaacatctc atacatctca tcaccattgg tatgtgaagc aacggagatc
      661 acaccatctg ctccaaggtt catagcatga aaggcatcgc catcctcacc tgtataaatc
      721 aagaagtctt ctggtttatg ctcaattagg taagccatgt tggcaaggct tgtacactct
      781 ttaacaccga tgatgtttgg atgctcagcc aaacgtaaca tggtttctgg cgtcatttcg
      841 accacgacac gacctggaat attgtagata atgattggca aatcagaagc atccgcaata
      901 gccttgaagt gttggtacat accttcttga gaaggtttgt tgtaataagg tacaatggca
      961 agacctgccg caaagccacc gaaagcagct acttccttag caaattcaat cgagtcacgg
     1021 gtatcattgg taccgatacc tgcaatcaat ggaacacgac cgttgacaat cttttgaact
     1081 gctgcaaata attccaattc ctccgcgtgt gtaagtgttg gactttcagc agttgttcct
     1141 gccaacagaa ttccttccgt atggtgggcc aacaaatgct caaccaaatc tggtaataca
     1201 tcatagttaa ttgcaccatc ttctttaaag ggcgtaatca tagccgtaat aatttttaca
     1261 tcacgtaaat cttgaataga catatctcaa cctttctaca actgaatgcc acaatcaaat
     1321 catcaaaagc caagccctta acatctaagc ttttaatttt ttgaaaatac gatagctatt
     1381 gacaaagaaa atcatactca ctgctaggaa tgtgagagcg actccagtag cacccactaa
     1441 agaataaatc cagtaaataa agcgtgggag gagtttttct ccacctgttt cttcccaaac
     1501 taacaaatct tgcctgataa tgaatccata gacagcaact acaagaccca aaacggtact
     1561 gaagaaaatt tgcacctttg ggcgttgccc cattttctta gcaatgttat cattcatttt
     1621 tcaatctcct aaacctagtc cttatttcaa ctcaaatttc aattctgcag ttggacgaac
     1681 aagaccacgt tcgtggaggg tttcagctat ttgaacagag ttccatgcag cacctttgag
     1741 caagttgtca gaaacaaccc acatgtgaat accgttttcc ttgtccaaat ctttacggat
     1801 acgaccaaca aaagtatcac gactaccaac agcattaatc gcttgcggat aaatttgatt
     1861 agccacatca tcttccaaaa ctgcgcctgg gaaagctgca atggctgctt ttacctcatc
     1921 aattggagca atttccttag tttcgatgta aacagactca gagtgggcag acaggactgg
     1981 aatgcggacg caggttgcag aaacggcaat gctgtcatct tccatgattt tcttggtttc
     2041 ttttgtcatc ttcatctctt cataagtata gtcattttca gtgaagagat cgatttgagg
     2101 aatagcgtta aagccgattg gatagtgttt cttatcgcca ccagaaggaa gaatattcgc
     2161 ttctaccgct ttgggttcca cgccatcatt caagacagag cgaagctgag cttgtgtttc
     2221 caaaatagct cccatacctg caccagagac tgcctgataa gtggatacga tgatccgctc
     2281 caagccccat ttctgacgaa caggctccaa ggcaaccatc atttgaatgg ttgagcagtt
     2341 agggcaggcg atgataccat tgtgattatc aagcgcgtga gcattcacct caggaacaac
     2401 caaaggtaca tctggatttt gacggaaata agaggtgtta tcaacgacaa ccgctcctgc
     2461 ttttactgcg tatggagcat acttggcaga tgtagaacca ccagctgaga agagggcaat
     2521 atccactcct tcaaaagctg tctctgttgt ttcttcgatg acaatatcct gtcccttgaa
     2581 ctgcaaggtc ttacctgctg aacgggcaga tgccaagaaa cgtactttct cgattggtag
     2641 agttgactct tccaacattt taatcatttg ggcaccaact gcaccagtcg caccaacaac
     2701 agctactaca taagccataa aaaatctcct ttagatcaat tcttcaaaat tttctaaaaa
     2761 tttgttattt cataattata ccataatttt attaaatgaa aagtatggaa ttcaaaaagc
     2821 ccacctaaaa ggtgggcaag ggcatcgttt ccgatgaggt tagaaggttc acagcatcta
     2881 accaaggtcc gctcctgcgt ttcaattaaa tgaagacctc cctagcgtcg aatgtgacaa
     2941 agtcactact cggctcatcg catgaatcta ttctaccata atctcaagga tttgcaagtc
     3001 acactaatcc aagcgcacgc catacgcatg aaaaatttct tctctccttt tggacgggaa
     3061 tgttgccatt cgaaaccgaa ttcctacttt tgtgctacct ca
//
LOCUS       DASGAC010000197         3036 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.199, whole genome shotgun sequence.
ACCESSION   DASGAC010000197 DASGAC010000000
VERSION     DASGAC010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3036
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.199"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            2..334
                     /locus_tag="U1335_001977"
     CDS             2..334
                     /locus_tag="U1335_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018372682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM5232425.1"
                     /translation="MSNTIKLQIVTNQLKSGDKLPTVRDLAEIAGVNPNTVQRALSDL
                     ETEGFVYSVRTTGRFVTDNQELISQTRLHLAQKELENFVTNMLDLGFNQDELTHQLDD
                     YLKGVSYE"
     gene            327..1034
                     /locus_tag="U1335_001978"
     CDS             327..1034
                     /locus_tag="U1335_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5232426.1"
                     /translation="MNNAYTLVELQQVSKSYGGAVALNNVNLKLTAGKIIGLLGPNGS
                     GKTTMIKLINGLLQPEYGQVLINGRTPSPETKAIVSYLPDTTYLDESMKVSDAITFFT
                     DFYADFDKERALHLLQDLGIDLNSRMKHLSKGNKEKVQLILVMSRQAQLYVLDEPIGG
                     VDPAARDYILKTIVNNYSPTASVIISTHLISDVEQILDEVIFLQYGSVIRHENVDDLR
                     IESGESIDELFRQDFKA"
     gene            1051..1833
                     /locus_tag="U1335_001979"
     CDS             1051..1833
                     /locus_tag="U1335_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM5232427.1"
                     /translation="MFKKLLKYEFQSVGKWYLGIYAGALVLSAILGFWLQALTLRAQA
                     GSTEPGGAEMVLFGTSFMTFGILIAALGLSTFFMVINRFRKNVYGRQGYLTMTLPVSS
                     HQIILSKLVASLVWYFLAGVTTVLSIGIILAVLMLGSEEFVIPELQTLIQELDWSVVF
                     AHLFYALIESTMGILLIYFSISVGQLFKDHRLLFAILTYIGISIVVGVFGTLVFTNYL
                     ENLYNAALPLYPSPILALINIILAFAYYFGTHFIMTKKLNLQ"
     gene            complement(1881..2888)
                     /locus_tag="U1335_001980"
     CDS             complement(1881..2888)
                     /locus_tag="U1335_001980"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HEM5232428.1"
                     /translation="MLNVNELVKTELHCHLDGSLSLGVIRQLAQMAKITIPAEDEALR
                     KLVSVHGKVDSLMAYLKLFDFVRPLLQTATALELAAYDLVRQAASDKVIYIEVRFAPE
                     LSTDQDLTILEAVSAVLVGLNRGREDFGVVAKLLVCGLKQTNTNQTKELFSAIADLAP
                     KGLVGFDFAGNEADYPTEELRDIIQFTQSLGYPMTFHAGECGCVTNVIQALEFGIRRI
                     GHGTALTRNPEAIQAFVNSGATLEMCLTSNLQTGAAQSLADFPYEQLVQAGAKITINT
                     DNRTVSNTNLNKEYQLFIEYFGTTKEEFYQFNRNAIQASFASEEEKANLLDVLAQKYN
                     L"
BASE COUNT          872 a          643 c          574 g          947 t
ORIGIN      
        1 aatcagtaat actataaaat tacagattgt aactaatcaa ctaaaatcgg gagataaatt
       61 gccaaccgtg cgtgacttgg ctgaaatagc tggcgtcaat ccaaacacgg tgcaacgggc
      121 cctgtctgat ttggaaacgg aaggatttgt ttactcagtc cgcacaacag gacgtttcgt
      181 cacagacaat caagaattga tttcacagac cagacttcac ttggcacaga aagaacttga
      241 aaactttgtg accaatatgc tggacttggg cttcaatcaa gatgaattaa cccaccagtt
      301 agatgattat ttgaaaggag tgtcttatga ataacgcata tactttggtt gagctacaac
      361 aagtttcaaa atcttatggt ggagctgtcg ccctaaataa tgtcaatttg aagttgactg
      421 ctggaaaaat cataggactt ttgggaccaa atggttcggg taaaacaacc atgattaaat
      481 tgatcaacgg tctgttgcaa ccagaatacg gtcaagtatt gatcaatggc cgcaccccat
      541 cgccagaaac caaggcaatt gtatcttatc tcccagatac gacctatctt gatgaaagca
      601 tgaaggtttc tgatgctatc accttcttta cagatttcta tgcggacttt gacaaggaac
      661 gcgcccttca cctcttgcaa gacttgggaa ttgacttgaa tagccgcatg aaacacctgt
      721 caaaagggaa caaggaaaag gttcagctga tcttggtaat gagccgtcag gcacaactct
      781 atgtcttgga tgagccaatt ggtggtgttg accctgctgc tcgtgattat attttaaaaa
      841 ccatcgtcaa caactattcg cctactgcct ctgttattat ttccacacat ttgatttcag
      901 atgttgaaca gattttggac gaagtaattt tccttcaata tggtagcgtt attcgccatg
      961 aaaacgtgga tgacctccgt attgaaagtg gcgagtccat tgacgaactc ttccgccaag
     1021 actttaaggc ttagttagaa ggagattgct atgtttaaga aattactcaa atatgaattt
     1081 caatccgttg gaaaatggta tttaggaatt tatgccgggg cattggtcct gtctgcaata
     1141 cttggattct ggttacaagc tttgacccta cgggcacaag ctggaagcac tgaacctggt
     1201 ggtgctgaaa tggttctttt cggtacatcc ttcatgacct tcggtatctt aattgcagca
     1261 ctcggtttat ccaccttttt catggttatt aaccgattta gaaaaaatgt ctatggtcgt
     1321 cagggctatt taaccatgac cttacctgtc tccagccacc aaattatcct cagcaaactt
     1381 gtagcttcat tggtttggta ctttttggca ggagttacca ctgttctttc aatcggaatc
     1441 attttagcgg tcctcatgct cggaagtgaa gaatttgtta tccctgagct acaaaccctc
     1501 attcaagaat tagactggtc tgtagttttt gctcatctat tttatgcact tatcgagtca
     1561 acaatgggaa tcttgctgat ctacttctcc atctctgttg gtcaactgtt taaagaccac
     1621 cgtctactgt ttgccatttt gacctatatt ggcatttcaa ttgtagttgg tgtgtttgga
     1681 actctcgttt ttaccaatta tctagagaat ctttataatg ccgcactacc attataccca
     1741 agcccgatct tggccttgat caatatcatt ctggcctttg cctactattt tggtacacac
     1801 tttatcatga ccaagaaatt gaatttgcaa taagaaaaag ctctttgccg gtcgttctga
     1861 catggcctag agctttcttt ttacaaatta tacttttggg ctaggacatc aagtaagttt
     1921 gccttttctt cttcactggc aaagcttgct tgaatagcat ttctgttgaa ttgataaaat
     1981 tcttccttgg tagttccaaa atactctata aatagctgat attctttatt taggtttgta
     2041 ttggaaaccg ttcgattatc agtattgatg gtaatctttg cccctgcttg aaccagctgt
     2101 tcataaggga agtctgctag agattgagca gctccggtct ggagatttga agtcagacac
     2161 atctcaagcg ttgctccgct attgacaaaa gcttggatag cttcaggatt gcgagtaagt
     2221 gctgtgccat gaccaattct tctaatccca aattcaagag cttgaatcac attggttaca
     2281 catccacatt ctccggcatg gaaagtcatg ggataaccta aagactgagt aaattgaata
     2341 atatcccgaa gttcttccgt aggatagtct gcttcatttc ctgcgaaatc aaatcccaca
     2401 agtccttttg gtgccaaatc agcaatagcc gaaaagagtt ccttcgtttg attcgtattc
     2461 gtttgcttta aaccacaaac cagaagttta gcaaccactc caaaatcttc ccgtcccctg
     2521 tttagtccaa ctaaaactgc tgagactgct tctaaaatag tcaagtcttg atccgtcgac
     2581 agttcaggtg caaaacgaac ttcaatgtaa atgaccttat cacttgcagc ttgtcgtaca
     2641 agatcatagg ctgccaattc taaagctgtt gcagtttgta agagtgggcg aacaaaatca
     2701 aataacttta aataagccat taaactatca acttttccat gaacactaac taattttctt
     2761 aatgcctcat cttctgcagg aatagtaatc ttagccatct gtgccaattg tcgaatgact
     2821 ccgagggaca atgagccatc caaatgacaa tgcaattctg ttttgaccaa ttcatttaca
     2881 ttcaacactg ttaacacaac ctccgtctga tatattgtta actatcatat catatttttg
     2941 aagaaaaaca agaattttac cataaacctg aactttcatt tgttttcagt tgtatcattc
     3001 acagacaatc atgaccaccc gtcaaacggg tggttt
//
LOCUS       DASGAC010000198         3020 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.200, whole genome shotgun sequence.
ACCESSION   DASGAC010000198 DASGAC010000000
VERSION     DASGAC010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3020)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3020)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3020
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.200"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(31..369)
                     /locus_tag="U1335_001981"
     CDS             complement(31..369)
                     /locus_tag="U1335_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002264292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232429.1"
                     /translation="MQVIKRSGEIVEFDPDKIYQAIIKAAQTVYVIDETWRKNLAQVT
                     KKVVLDLEEAHTERPTISMVQSQVEHRLLDAGYISIAEHYISYRLQRDLERNGYGDKI
                     IVHLRFEQVR"
     gene            536..2326
                     /gene="pepF"
                     /locus_tag="U1335_001982"
     CDS             536..2326
                     /gene="pepF"
                     /locus_tag="U1335_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="HEM5232430.1"
                     /translation="MTNAMPKRQEIDVQLTWDTDILFPTPDNYKENLVAYAKQVTAFE
                     SNYKGKLTDKDTIVSALTEYEKIVILDSRLSHYAFLPLEVDKMNTELASLANEYDLVS
                     AKARPQRDFLYSELGQLDEAFLLELKEEQPQWAAFFEGILRDKPHQLHPLQEELLSNF
                     APTFGQPYNNYGVTKFEDMTFDNFEANGETLGNSYVLFENDYELSHDTEIRRNSAAGF
                     YSTLKKYKNTTAATYLSHIKNEQIEARLRGFENTIDFLLHSQNVSRDLFDRQIDVIMK
                     ELAPHMRRYVKLVAKAHGLDKITHADLKISLPSEYNQRITPEESKQFLIDCLGILGED
                     YVKMIEQSFDERWIDFAQNEGKATGGFCATLYDGPSYILLSWTGLMNEVLVLAHELGH
                     AGHFQLAKKQSVLSYDPSLYFIEAPSTANEVLTCNTLLKNNQDPGFQAYLISELISRT
                     YFHNMVTHLLEAAFQREVYTRLDNEEYLNGDILCQIKLDVIKEFWGEDLEIGDDAGLI
                     WMRQPHYYIGLYPYTYSAGLTIGTAMAKQLEEHPEEVVEKWLETLSLGASLSAQDLAK
                     HAGVDVSTDQPLKETIAYVGSLVDKLETLI"
     gene            complement(2355..2597)
                     /locus_tag="U1335_001983"
                     /pseudo
     CDS             complement(2355..2597)
                     /locus_tag="U1335_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922258.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2596..3012)
                     /locus_tag="U1335_001984"
                     /pseudo
     CDS             complement(2596..3012)
                     /locus_tag="U1335_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646921.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
BASE COUNT          892 a          663 c          570 g          895 t
ORIGIN      
        1 gcaaaaaacc tagatttctc taggtttctc ttaacgcact tgttcaaaac gcagatgtac
       61 aataatctta tcgccatagc cattacgttc caaatcacgt tgcaagcgat aggaaatgta
      121 atgctcagca atagaaatat accctgcatc taaaagacgg tgttcaactt gcgactgaac
      181 catgctaatc gttggtcgct ctgtatgagc ttcttccaag tcaagcacta ctttctttgt
      241 gacctgagca agatttttcc gccaagtttc atcaatgaca tagactgtct gtgcagcttt
      301 aatgatggct tggtagattt tatctgggtc aaattcaaca atctctccac tacgtttaat
      361 gacttgcata aaagctcctt tctggttttc agtaaaccct ttcatactta cattatctag
      421 gtttttgtgt attttgtcaa gtattctttt tcataaattt tgccttggct tattttcgct
      481 gaaagccctt tagtatgata taatggacct attaaaatga aataaggaga aaatcatgac
      541 aaacgcaatg cctaaacgtc aagaaattga cgtacaatta acctgggata cggacattct
      601 atttccaacc cctgacaact acaaagaaaa tttagtagcc tacgctaagc aagtaacagc
      661 tttcgaatcg aattacaaag ggaagctaac tgataaggat accatcgttt ccgccttaac
      721 agaatacgaa aaaatcgtta ttcttgatag cagactttcc cactatgcct tccttccttt
      781 ggaagtcgat aagatgaata ctgaattggc gagcctggcc aacgaatacg acctcgtttc
      841 tgccaaggca cgtcctcaac gagatttcct ctattcagaa cttgggcaat tagatgaagc
      901 ctttctactt gaattaaaag aagaacaacc acaatgggct gcattctttg agggtattct
      961 ccgtgacaag ccgcatcaac tgcacccact tcaagaagaa cttttatcaa acttcgctcc
     1021 aacttttggt cagccctata acaactacgg tgtgaccaag tttgaggata tgacctttga
     1081 caacttcgag gcaaatggcg aaacactcgg caatagctat gttctctttg aaaatgatta
     1141 tgagctcagc catgataccg aaatccgtcg taattcagct gctggtttct attcaacctt
     1201 aaaaaaatac aagaatacaa ctgcagcgac ttatttgtct catatcaaga atgagcaaat
     1261 cgaagctcgc ttgcgtggat ttgaaaatac cattgacttc ctcttgcata gtcaaaatgt
     1321 cagccgtgat ctcttcgacc gtcagattga tgtcatcatg aaagaattgg ctcctcacat
     1381 gcgccgctat gtgaaattgg ttgccaaggc tcatggattg gacaagatca ctcatgctga
     1441 cttgaaaatc agtctgcctt ctgaatacaa ccaacgcatc acacctgaag aatctaagca
     1501 attcttgatt gactgcttgg gcattcttgg tgaagattat gtgaaaatga ttgaacaatc
     1561 atttgatgag cgttggatcg actttgccca aaacgaaggc aaggcaacag gaggcttctg
     1621 tgctactctt tacgatggac catcctatat cctactttca tggacaggtt tgatgaatga
     1681 ggtcttggta ttggctcacg aattgggtca tgcagggcat ttccaattgg ctaagaaaca
     1741 aagcgttctc agctacgatc catccctcta cttcatcgag gcgccttcta ctgctaatga
     1801 agtcttgaca tgtaacaccc ttttgaaaaa caaccaagat cctggcttcc aggcttactt
     1861 gattagcgag ttgatcagcc gtacttactt ccacaacatg gtcactcact tgcttgaagc
     1921 agccttccaa cgtgaagtct acactcgttt ggacaacgaa gaatacctca atggtgatat
     1981 tctctgccaa atcaagttgg atgtcatcaa ggaattctgg ggtgaagacc ttgaaatcgg
     2041 tgacgatgca ggtcttatct ggatgcgtca accacactac tacattggtt tgtatccata
     2101 tacctactca gctggtttga ccatcggtac agctatggca aaacaattgg aagaacatcc
     2161 tgaagaagtt gttgaaaaat ggttggaaac cttgtcactt ggtgcaagtc tttctgccca
     2221 agaccttgct aaacacgcag gtgttgacgt ttcaactgac caaccactca aagaaaccat
     2281 cgcctacgtt ggttcattgg tggataaatt ggaaacacta atctaaaaca cataaaagac
     2341 ttgaacttat ttgttcaggt ctttttgtct attctttctt gataccaatt tttgatatag
     2401 gtcaattcat cctgacttaa aaaatgtccc ttgtcaaaac gagctaggtt ggcactggga
     2461 aaagctgacg cttgccagtc atctacaaga tttttaagag cgacttggtc gacgagttgg
     2521 tcattctgcc acagtgtaaa caatatctct gctctgctat tttccatagg aaaagcataa
     2581 tctaaggctg aagggtggaa acatttctcc gactgattca tggtaagtta aaccgagcag
     2641 ctgtccatct tcatcttgga aattcagaat atgcccattt ccaaaagcct gaattccttc
     2701 attttccact tcaaactctg tcagtctttt ctgccaaaat tctaatgcct ccaaatcttt
     2761 taccagaaaa acagttcttt ccaaacgatt ggttccgttt cgatgactgg gatggttagg
     2821 catatcaaaa atggtgtatt ccgttccaaa gcggccctct tcatcaccga aaaagagatg
     2881 atacatgctt gaatcttctt ggttgactgt tttccaggtc aatttcaaac cgagaatatg
     2941 atgataaaaa tgataggctt gatgaatatt tcctaccaag cttgaaatgt gatgaatacc
     3001 tgtattgttc atagctttac
//
LOCUS       DASGAC010000199         2996 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.201, whole genome shotgun sequence.
ACCESSION   DASGAC010000199 DASGAC010000000
VERSION     DASGAC010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2996
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.201"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            48..1370
                     /locus_tag="U1335_001985"
     CDS             48..1370
                     /locus_tag="U1335_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000032347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM5232431.1"
                     /translation="MNKNNNILTHHEQLRLDYLQKNIHYLNDKESRELDYLLYKKELR
                     ERHGSPRQSLRSFTPTAYEDGFEEDYFEEDDEQEELLPRYPERKSRKTRQAKPQRFQS
                     PRIEPKAKVPKPKKARKKGGFKRFIGFVLLAIALVIVAMGYNFFKGMNSVSEKPVAEV
                     FNGVDTSNGTNILILGTDGRVGESSGETRTDTIMVLNVNNTDNKVKLVSFMRDTLVDI
                     EGYEYKLNTAYTLGEQDNQQGAEEVRKTLKNNFDIDIKYYAMVDFATFATTIDTLFPE
                     GVTIDAQFSTINGEVVSSVEVPNDLQLEENAPAYQTIQVGVQQMDGKTLLNYARYRSD
                     DEGDFGRTRRQQEVLSAVMTQAKNPMKLFSGSEAIGKVVAMTPTTVPQSFMWLQGPGL
                     LLDAANGIERVTIPEYGDWIDDYDMYGGMALRVDFEKYQQRLAELGLR"
     gene            1437..2792
                     /gene="rlmD"
                     /locus_tag="U1335_001986"
     CDS             1437..2792
                     /gene="rlmD"
                     /locus_tag="U1335_001986"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HEM5232432.1"
                     /translation="MLKKNDIVEVEVVDLTHEGQGVAKIDGFVFFVDNALPGEKISMR
                     ILKLKKNIGFGKVEQWLSYSPDRNQDLDLTYLRTGIADLGHLTYPAQLAFKKKQVENS
                     LRKIAGISEIAVADTLGMDNPLAYRNKAAVPVRRVNGQLETGFFRKNSHDLVPIEDFY
                     IQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQLMLVLVTTRPK
                     IFRVETLIERLTSQFPNLVSIVQNINDQNTNAIFGQEFRLLHGSETIADTMLGNEFEI
                     SAPSFYQVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGISFAKQVKHVYGVEV
                     VEKAVLDSQKNAARNGIDNVTYVCDSAESAMQKWVADGVKPTVIFVDPPRKGLTDSFI
                     KASSSVEPDKIVYISCNVATMARDIKLYEELGYKLTKVQPVDLFPNTHHVECVALLVK
                     A"
BASE COUNT          927 a          511 c          693 g          865 t
ORIGIN      
        1 gtactaggga attacctggt ctatatgacc agctaggatg aagacagatg aataaaaaca
       61 ataatatcct aacccatcat gaacaattga ggttagatta tttgcaaaaa aatatccact
      121 acttaaatga caaagaaagt cgcgagttgg attatctatt atataaaaaa gagttgagag
      181 aacggcatgg aagtccaagg caatctctac gtagcttcac accaacggct tatgaagatg
      241 gcttcgagga agattatttt gaagaggatg atgagcaaga ggaattgttg cctcgctatc
      301 ctgaacgtaa atctagaaaa acaagacaag ccaaacctca acggtttcag tctcctcgta
      361 tcgagcccaa agcgaaagta cctaaaccta aaaaagctcg taaaaagggt ggtttcaagc
      421 gctttattgg tttcgtattg cttgctatag cgctagtgat tgtagcgatg ggctataatt
      481 tcttcaaagg tatgaatagc gtgagcgaga agccggtagc tgaggtcttc aacggcgtag
      541 atacatcgaa tgggacaaat attttaattt tgggaacaga cggtcgtgtt ggcgaaagct
      601 caggtgaaac tcgaacggat accatcatgg ttctaaatgt gaataacacg gataacaaag
      661 tcaaacttgt tagctttatg cgggatacct tggtggatat tgagggatat gaatataaac
      721 tcaatactgc ctatactttg ggagaacagg ataatcagca aggggctgaa gaagttcgga
      781 agacgttgaa gaataatttt gacatcgata tcaagtacta tgcgatggtg gattttgcaa
      841 cctttgcgac aacgattgat acacttttcc ctgagggtgt aacgattgat gcacagtttt
      901 caactattaa tggtgaagtc gttagctcag tagaagtgcc gaatgattta cagctggaag
      961 aaaatgctcc tgcttatcaa acgattcagg tcggtgtaca gcagatggat ggtaagacct
     1021 tgcttaacta cgcgcgctat cgttcggatg atgaaggtga ttttggtcgt acgagacgtc
     1081 aacaggaagt gttatctgct gttatgacac aagctaaaaa tccaatgaaa ctattctctg
     1141 gctccgaagc tatcggtaag gttgtggcca tgactccgac aacagtgcca caaagcttta
     1201 tgtggctaca gggaccaggt cttctattgg atgcggcaaa tggtatcgaa cgtgttacaa
     1261 taccagaata tggagactgg attgacgact atgatatgta tggtggtatg gctcttcgtg
     1321 ttgattttga aaaataccag cagcgcttgg ctgagttagg cctgcgttaa gaaatatggt
     1381 atactagaag tgacttcggt cactttttta gtggtccaaa aatagaaagt agaattatgt
     1441 taaagaaaaa cgatattgtc gaagtagaag ttgtagattt gacacatgag gggcagggtg
     1501 tggcaaaaat tgatggtttt gtcttctttg tagacaatgc tcttccaggc gagaaaattt
     1561 ccatgcgcat cttaaaactt aagaaaaata ttggttttgg taaggtggag caatggctga
     1621 gctactcacc agaccgtaat caggacttgg atttaaccta tctaagaaca ggtattgctg
     1681 acttgggaca tctcacttat ccagcccaac tagcttttaa gaaaaaacaa gttgagaata
     1741 gtctacgtaa gattgcaggc atttcagaaa tagcagtagc agatacgttg ggaatggaca
     1801 atcctcttgc ttatcgtaat aaggcagctg ttccagttcg tcgtgtgaat gggcagttag
     1861 aaacaggatt cttccgaaaa aattcacatg atttagttcc gattgaggat ttttacattc
     1921 aacataagga aattgatgcc ttggttctag cgacacgtga cctcttgaga aaattagact
     1981 tgaagcctta cgatgagaaa gaacagacag gacttgtgag aaatattgtt gttcgtcgtg
     2041 gtcattattc aggtcagttg atgctagttt tagttacgac tcgtccgaag attttccgtg
     2101 ttgaaaccct tattgagcgt ttgacaagcc aatttccaaa tcttgtttct atcgttcaga
     2161 atattaatga ccagaatacc aatgctatat tcggtcaaga attccgtctt ttgcatggca
     2221 gtgaaactat tgcagatacc atgttgggca atgaatttga aatttctgca ccgtctttct
     2281 atcaagtcaa cacagaaatg gctgaaaaac tctatcagac cgccattgat tttgcagaat
     2341 tgtcggcaga tgatgtcgtg attgatgcct attcaggtat tgggacaatt ggtatctcct
     2401 ttgcaaaaca agttaagcat gtttacggtg tagaagtcgt tgaaaaggct gttcttgata
     2461 gtcagaagaa tgctgctcga aatgggattg ataatgttac ctatgtctgt gatagtgcag
     2521 aatccgctat gcaaaaatgg gtggcagatg gagtcaaacc aactgtgatt tttgtcgacc
     2581 cgccgagaaa aggcttgact gatagcttta tcaaggcaag tagttctgta gagccagata
     2641 aaatcgtcta catctcttgt aatgtggcaa ccatggcgcg tgatattaaa ctttatgagg
     2701 aattggggta caaattgacg aaggtacagc cggtggattt atttccgaat acgcatcacg
     2761 tcgagtgtgt tgctctgctt gtaaaagcct agaaaccttt gaacgaaggg attccataga
     2821 gaattactca ttttctctaa ttagataaaa tgtaacctct gttattcttg tataactact
     2881 ttacaagttt tgaaaaattg gtattatctg catcatttat atatttgtat gtttatgttc
     2941 gagaaaatct atacgcatag ttaagaaaga aaagagccgc gaaagcgact cttttt
//
LOCUS       DASGAC010000200         2971 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.202, whole genome shotgun sequence.
ACCESSION   DASGAC010000200 DASGAC010000000
VERSION     DASGAC010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2971
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.202"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(53..1039)
                     /locus_tag="U1335_001987"
     CDS             complement(53..1039)
                     /locus_tag="U1335_001987"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232433.1"
                     /translation="MNREELLDKLYLVRNGLYQIYDLEVECINLSNQKKNATLRQETL
                     VESIEKNEETSGMEKVYRLAYMAILSLLFTTVSKFLFLGIGFGSTLVDIGFSSIIFWL
                     LTKHMRRHEETWLSPVFYVLIFGAIVIPIINVMEVDFFQKWLLIVPIALAIFLGKSTY
                     STWIRFVNALIDEENSLVMQQNEKRKQEFNRIIATNKSIDQRVSILQNEMDTTARALY
                     AFGDGWYPKDYYFLNAIEFFIHSLENFMANNVQEMILLYRNHVSVEQTLAYQSESNEL
                     QRANHINQERMMELLQHNNYLAEQQVHLLEKIDSNTSVQHLQSITIQHNHYH"
     gene            complement(1100..1681)
                     /locus_tag="U1335_001988"
     CDS             complement(1100..1681)
                     /locus_tag="U1335_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232434.1"
                     /translation="MKKILFRFPIRYYLNPISILCTGMMVYMEITKWQTLFAKIAEYE
                     AYNVKHFHNHFELIPGTVFGLVWTVFNILLYPYVFDFIVTNSIRFLGSGILTKNMVKH
                     TISIYQAEIERGDIYTHHEIEYGWHGYPIGLVPKFDNAKARAFDEASYYAIIRIGFLL
                     LPIFVLPALLVGGWLTAALIGWPISWFFDEKKK"
     gene            complement(1684..1842)
                     /locus_tag="U1335_001989"
     CDS             complement(1684..1842)
                     /locus_tag="U1335_001989"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232435.1"
                     /translation="MKDENKSPSILGKLVKFSFVVIGMIMNYIAKETGRVWKENARPS
                     NPPRIWWW"
     gene            complement(1846..>2971)
                     /locus_tag="U1335_001990"
     CDS             complement(1846..>2971)
                     /locus_tag="U1335_001990"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012948.1,HMM:TIGR04320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SEC10/PgrA surface exclusion domain-containing
                     protein"
                     /protein_id="HEM5232436.1"
                     /translation="HTVFVNDRSLDYLPDTDPSKVNNIIYQVPSTSSLQAALKKAKAD
                     QTAAQTASNVAKAELTKASADYATALAAKTQAEKTLADATATPLQTQVAENNLRLATI
                     ALQNAEARKADAQKAVDNFSANLADKKAALDTAKASLATAQATATAKAEALETAKTEL
                     ATQQATLDSLNKDKDALLAEKDRLVEEAKALAEELDGYMNAPARLEKVKATLAEKQAA
                     LTEAQTKAATAQEKLETVTAKLAEEKAKLAELQAEYDKLKDLENKAKDNVIATLPDGT
                     IVAVPKDAPTAAEKPAVDVDAIKQTLDKGQDVKVVDGKVVVANPQAGVTVTPQGITYS
                     RAERAKTLPNTGEQTSLLALAGVAVLSSLGFASVRRKRRG"
BASE COUNT          842 a          600 c          534 g          995 t
ORIGIN      
        1 aagaaatgat aactgcatat tctcctacct cttctaaaat ttgtaaacaa tctcaatgat
       61 aatgattatg ctggatcgtg atactctgta aatgttgaac actcgtattg ctatcaatct
      121 tttccagtaa atgcacttgt tgttctgcta gatagttatt atgttgaagc aactccatca
      181 tgcgctcttg gttgatatga ttagctcgct gtagctcgtt gctctcgctt tgataggcta
      241 aagtctgctc cacgcttaca tgatttcgat aaagaagaat catctcttga acattgttag
      301 ccataaaatt ttcaagagaa tgaataaaga attcaattgc atttaagaaa taataatctt
      361 ttggatacca gccatcacca aaagcatata gggcacgagc tgttgtatcc atctcatttt
      421 gaagaatact tactctctgg tcaatagact tgttggtggc aataatcctg ttgaattctt
      481 gttttctttt ctcattttgt tgcataacta atgaattttc ttcatcaatt aaagcattta
      541 caaatcgaat ccaagttgaa taagtcgatt tgccaagaaa aatagctagc gcaatcggaa
      601 caatcaacaa ccacttctga aaaaaatcca cttccattac attaatgata ggaatcacaa
      661 tcgccccaaa gataagtaca tagaaaactg gagataacca cgtttcttcg tgacggcgca
      721 tatgtttggt caataaccaa aaaataatac ttgagaatcc aatatcaact aaagtgctac
      781 caaatccgat acctaggaac agaaacttag acactgtagt aaataacaaa cttaagattg
      841 ccatataagc tagtctataa actttttcca tgccactagt ctcttcattt ttttcgattg
      901 actcaactaa agtttcttgc cgcaatgtgg catttttctt ttgatttgat agattgatac
      961 attctacctc taaatcataa atttggtaaa gtccatttcg taccaaatat aatttatcta
     1021 ataattcctc tcgattcatg ctttctcctt gtaaacatta gaaaaatctt tctgctgata
     1081 gaatcaacag aaagaccagt tattttttct tttcatcaaa gaaccaggaa atcggccatc
     1141 caattaaggc tgccgttagc catccaccaa ctagcaaagc tggcaggaca aaaataggta
     1201 ggagcaggaa gccaattctg ataatggcat aatacgatgc ctcatcaaaa gctcttgcct
     1261 ttgcattatc aaatttcggt accaacccaa taggatagcc atgccaacca tactctatct
     1321 catgatgcgt gtaaatatcc ccacgctcaa tctctgcctg ataaatagat atagtatgtt
     1381 tgaccatgtt tttagttaga ataccactac ccaaaaaacg tatactgttt gtgacaataa
     1441 aatcaaacac atacgggtaa agcaggatat tgaataccgt ccacacaagt ccaaagactg
     1501 taccaggaat caattcaaaa tgattatgaa aatgtttaac attataggct tcatattccg
     1561 ctatctttgc aaataaggtt tgccatttag taatctccat atacaccatc attcctgtgc
     1621 atagaatact gatgggattc agataatacc gaatcggaaa acgaaatagt atctttttca
     1681 ttcttaccac caccatattc ttggtgggtt agatggtctt gcattctctt tccataccct
     1741 accagtttct tttgcaatat agttcattat cattccaata acgacaaaag aaaactttac
     1801 aagtttaccc aaaattgatg gcgacttatt ttcgtctttc atcccttacc ctctacgctt
     1861 tcttcttaca cttgcaaaac caagactaga taacactgcc acacctgcga gtgccaacag
     1921 acttgtttgt tcccctgtgt ttggcaaggt cttagcacgt tctgcacgtg agtaagtaat
     1981 accttgtggt gtgacggtga cacctgcttg tgggttcgcc accacaacct taccgtcaac
     2041 aactttcaca tcttgacctt tatcaagagt ttgtttgatg gcatctacat caactgctgg
     2101 tttttcagca gcagttggtg catcttttgg tactgcaacg attgttccgt ctggaagtgt
     2161 tgcaatcaca ttgtcttttg ctttgttttc aaggtctttg agtttgtcat actcagcttg
     2221 aagttctgcc aatttagctt tttcttcagc aagtttagca gtaacagttt caagtttttc
     2281 ttgtgcggtt gcagctttag tttgtgcttc agtaagagct gcttgttttt ctgcaagtgt
     2341 tgcttttact ttttcaaggc gtgctggtgc gttcatgtaa ccatcaagtt cttcagcaag
     2401 tgcttttgct tcttcaacca agcggtcttt ttctgcaaga agagcgtctt tgtctttgtt
     2461 caagctatca agtgttgctt gttgtgtagc aagctcagtt ttagctgttt caagagcttc
     2521 agcttttgct gtagcagttg cttgagctgt tgcaagacta gctttagcgg tatcaagtgc
     2581 agctttctta tcagcaagat ttgctgagaa gttatcaact gctttttgtg catctgcctt
     2641 gcgagcttca gcgttttgaa gagcaatggt tgcaagacgt aggttgtttt cagcaacttg
     2701 agtttgaagt ggtgttgcag tagcatcagc aagagttttt tcagcttgtg ttttagctgc
     2761 taatgcggtt gcgtaatcag cactagcttt agttaattca gctttagcta cgtttgatgc
     2821 cgtttgtgct gcggtttggt cagctttggc tttcttaagg gcggcttgaa ggcttgatgt
     2881 tgatggtact tgatagatga tgttgttaac cttagacgga tctgtatctg gaagatagtc
     2941 taaactgcga tcattaacaa acactgtgtg t
//
LOCUS       DASGAC010000201         2949 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.203, whole genome shotgun sequence.
ACCESSION   DASGAC010000201 DASGAC010000000
VERSION     DASGAC010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2949)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2949)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2949
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.203"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            48..518
                     /locus_tag="U1335_001991"
     CDS             48..518
                     /locus_tag="U1335_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HEM5232437.1"
                     /translation="MKISVKKEAGHYLLSICYTVPANLAEAWDLLATNSGFVRWFPQL
                     RVEGDKLIFEMEDFRETMDLLEYRKNEKIAYRWDSATVSFTLSQLENQTLITFEERIP
                     EDFGNEFANAQKDMTGWLVQNECIKKFLEGQEPPVRQPLQEKWKTFLELELEVL"
     gene            850..2109
                     /locus_tag="U1335_001992"
     CDS             850..2109
                     /locus_tag="U1335_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HEM5232438.1"
                     /translation="MHQITCPHCGTAFQVNETEYSQLLAQVRGAEFDKEIHDRLERER
                     ELLSQKAENDLQARLSDKDKEILELTAKLDKFASQTELEISSAISQKDQEIQKLKAQL
                     GQIELAKDLELQQAVAQVEKERDAAQNALVVQEQKQKLALATTRQEYEVRLKAADEQV
                     EFYKNFKAQQSTKAIGESLELYAEAEFNKVRSYAFPRAKFAKDNEVSASGSKGDFIFR
                     DFDESGLEFISIMFEMKNEADTTKTKHKNADFFKELDKDRREKKCEYAVLVSMLEADN
                     DYYNTGIVDVSHEYEKMYVIRPQFFIQLIGILRNAALNSLQYQQELALVKEQNIDITH
                     FEEDLEIFKNAFAKNYQSASNNFQKAIDEIDKAIKRMEAVKAALTTSENQLRLANNKL
                     EDVSVKKLTRNNPTMKAKFEALREEED"
     gene            2135..>2949
                     /locus_tag="U1335_001993"
     CDS             2135..>2949
                     /locus_tag="U1335_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM5232439.1"
                     /translation="MKDRKIILIDGEDKSENIESLQSIRYKGKLYFEIYFKNNVQPYR
                     YNVQRVEVLKFSKQLDPSEIGVYRRQDGVLLNNIESMFEFNGTHSRAYIIRYKNGTGK
                     LYMGRDLEIRQNELTHSNSRHVFSYLTELSKLNPLRNSGTDQLLLLKRYEELDYVDKT
                     VALASYLSPSKKNNLPFHGELIFPFGCNNSQYKATKNALINQFSVIQGPPGTGKTQTI
                     LNIIANIVIRNKTVLIVSNNNAAIDNIYEKLKNYGLDFPVAYLGSEKNKNNFIL"
BASE COUNT          967 a          476 c          705 g          801 t
ORIGIN      
        1 agaccggtgt tttttggtat aatagaagga tagaatagga gtttcgtatg aagattagtg
       61 tgaagaaaga ggcggggcac tacctgctca gcatttgcta cactgttcca gctaatttag
      121 cggaggcatg ggatttgttg gcaacgaata gtggctttgt tcgctggttt ccacagttga
      181 gggttgaggg agacaagttg atatttgaaa tggaagactt ccgtgaaacc atggatttac
      241 tggaatatcg aaaaaatgaa aaaattgcct acaggtggga ttcagcaaca gtttcattta
      301 cactgtctca gctagaaaat cagaccttga ttacttttga agaacgaatt ccagaagatt
      361 ttggtaatga atttgcgaat gctcaaaaag acatgacagg atggttggtg caaaatgaat
      421 gtatcaaaaa attcttagaa ggtcaggagc cgcctgtgcg tcaacccttg caggaaaagt
      481 ggaagacttt tctggagctt gaattagaag ttctgtgatc tgaaaggagg ctgttatgaa
      541 aaagtggtgg gaacaactga aagaagaata ttatgaaaca cgatttaatt ctaatgaaga
      601 ttggatggaa tggtttatca aacgaaagat gacctgggga tggagatggc taattgtcgt
      661 gattctatgt gtcctgtatc gtctgttttg gctcgaacca cgaaactttt ttcgtttttt
      721 ctattttata tgtgttctag gtcttatata tattttttat aaactgattc gctatactgt
      781 caggaagaaa taaaaactat cagcagtatt tgcaatcttg aagtttaatg taaaatgaaa
      841 ggaaatacta tgcatcaaat tacttgcccc cattgtggga cggcctttca ggtcaatgaa
      901 acagaatata gtcagctttt agcccaagtg cgtggtgcgg agtttgacaa ggaaatccac
      961 gaccgtttgg agcgggaacg ggaattatta agccagaagg ctgaaaatga tttgcaggct
     1021 agattgagtg ataaggataa ggagattctg gaactgaccg caaaacttga taaatttgct
     1081 agtcagacgg aactggaaat cagctctgct atttcccaaa aagaccaaga aatccaaaag
     1141 ctcaaggctc agttggggca aatcgagcta gccaaggact tggagttgca gcaggcggtg
     1201 gctcaggtgg agaaggagcg tgacgcggct cagaatgcat tggtggtgca agagcagaag
     1261 cagaagttgg ctttggcgac cacccgacag gagtacgagg tacggctcaa ggcggcggat
     1321 gagcaggtgg aattttacaa gaatttcaag gcccagcagt ccaccaaggc gatcggcgag
     1381 agtttggagc tctatgccga ggcggagttt aacaaggttc gttcctatgc ttttccacgt
     1441 gccaaatttg cgaaggacaa cgaagtatca gcgtccggtt caaaaggaga tttcatcttc
     1501 cgtgattttg acgagtcggg cttggaattt atttccatca tgttcgaaat gaaaaacgag
     1561 gcagatacga ccaagaccaa gcataaaaac gctgatttct ttaaggagtt ggataaggac
     1621 cgtcgggaga aaaaatgcga atatgctgta ttagtcagca tgctagaggc ggacaatgac
     1681 tattacaata cagggattgt ggatgttagt catgaatatg agaagatgta tgttattcga
     1741 ccacagttct ttatccaatt aatcggaatt ttacgaaatg ctgcgctcaa tagtctgcaa
     1801 tatcagcagg agttagcctt ggttaaggag cagaatatcg atattactca ttttgaagaa
     1861 gatttggaaa ttttcaagaa tgcttttgca aaaaactatc aatcggccag caacaatttc
     1921 caaaaagcta ttgatgaaat cgataaggca atcaagcgaa tggaagctgt caaagcagcc
     1981 ctgaccacca gcgaaaacca gctacgactg gcgaataaca agctggaaga tgtttctgtc
     2041 aaaaaactca ctcgcaataa cccaaccatg aaagccaagt ttgaggcgtt gagggaggag
     2101 gaagattaag attgaaagtg agagtggaga tatagtgaaa gatagaaaaa taattttgat
     2161 tgatggagag gacaagtcag aaaatatcga gtcacttcaa tcgattcgtt acaaagggaa
     2221 gctctacttt gaaatttatt ttaaaaataa tgtccaacct tatcgctaca atgtgcagag
     2281 agttgaggtg ctgaagtttt ccaaacagtt ggatccttca gagataggag tttatagaag
     2341 gcaagatggg gttttattaa ataatattga gtcaatgttt gaattcaatg gaacgcactc
     2401 acgggcttat atcatccgct acaaaaatgg cactggaaaa ttatatatgg ggagagacct
     2461 agaaatacgg caaaatgagt tgacacattc gaatagtcgt catgttttta gttatttgac
     2521 ggaactatct aagctgaatc ctctgagaaa ctctgggact gatcaattgc tcttgttaaa
     2581 aaggtatgag gaattggatt acgtagacaa aacagttgct ttagcgagct atctaagtcc
     2641 cagtaagaag aataacttgc cgtttcatgg ggaactgatt ttcccttttg gttgtaataa
     2701 tagtcaatat aaagcaacaa aaaatgcctt aataaatcaa tttagtgtca ttcaaggacc
     2761 tcctggaact ggtaagacac aaacgattct gaatattata gctaatatag tgatacggaa
     2821 taagacggtt ctaattgttt ctaataataa tgcagccatt gataatattt acgaaaaact
     2881 aaagaactat ggtcttgact ttcccgtggc ttaccttgga agtgaaaaaa ataaaaataa
     2941 ttttattct
//
LOCUS       DASGAC010000202         2946 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.204, whole genome shotgun sequence.
ACCESSION   DASGAC010000202 DASGAC010000000
VERSION     DASGAC010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2946
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.204"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..204)
                     /locus_tag="U1335_001994"
     CDS             complement(<1..204)
                     /locus_tag="U1335_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017649262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5232440.1"
                     /translation="MTLKQYIGTRVRQIRKAKNLSQQQLSEKAEVGIDYISNLETKGS
                     NIKVDTLEKIISALEIEVSDFFQV"
     gene            372..1580
                     /locus_tag="U1335_001995"
     CDS             372..1580
                     /locus_tag="U1335_001995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232441.1"
                     /translation="MRRPKKVVESLAVTVAIGASATNLQVNAEEIVTPVTESAETVVT
                     ATPTTISAEQVEQAKEVASADAEAVKVQAAVDKAAGEAVANETKAVEGLTEAVAKAST
                     AQEALPVAEAEVATQTKAVTDAQTAVEKAEEVVASQEGDVAKAQATADAAKTAEAQAS
                     AKLEEAKAQPVVTAETVNAQIAETKSTIATKEIEVAQTTAAIAATDAKLASANEAVAN
                     YKPTTVTETVATTNYVDLTGADRDMEDVIREQYPDLNPADYARQLETVIFDGEDTQTI
                     VLTPEQAAEYKETGSFTYVFDAKAVSEEAAKIIAELRRINGITLKPWAGTQEDLELKV
                     TDSFVAFTQKRAQELLTNFSHDSSLVDPVNGYDMSRVGESLGLELPYDMTGGGVNKKK
                     FYLMQNLPIT"
     gene            1676..2803
                     /locus_tag="U1335_001996"
     CDS             1676..2803
                     /locus_tag="U1335_001996"
                     /inference="COORDINATES: protein motif:HMM:NF012948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5232442.1"
                     /translation="MATGEDAQYFVLLSDGNPRAVTYEQSVVNGKLTQTFNGNRLKYL
                     PKRTFNYVVSTVVDDSQDLKDAVAKLEAEKSALLTQQAQATETLNQALISLASLEQAK
                     TDVTLANTKRTVAIAEAQDAFDKASAAAKTATTNLQQVLASYEASLSSLSTAKGNVKV
                     AQDKLATAQAKVTELKALLVNQGQLLADLDAAKARLEDATLVKSESSALLAELTAKAK
                     ASQTEADRLATLFALQEQFNTVITDDTVTATPKDAPTVNEKPVLNIDDVIKETPKDEQ
                     TVSDLPVVKTDTDKERDLTVIGEEGNADKEKTVVAPTVYKPQPGVTVQQTATGEKVTY
                     SRVERAHSLPNTGSEDNIVLMGFGVVLAGLGLAGARRRRHG"
BASE COUNT          996 a          573 c          610 g          767 t
ORIGIN      
        1 tacttgaaaa aaatcagata cttcaatttc aagagcagaa atgatttttt caagagtatc
       61 aacttttata tttgaacctt ttgtttcgag gttggaaata tagtctattc cgacctctgc
      121 tttttcactt aactgttgct ggctcagatt ttttgctttt cgaatttggc gaacacgagt
      181 accgatatat tgttttaatg tcatttgatt tcactccctc attactatct aaatgatacg
      241 aggaaataag aacgaatata accagtcttc agactaaata ttcattatta ttttgtgtac
      301 agaacaactt ttgtgctata atagacttga acaaaaattt ttgttcataa aaaaattaag
      361 aggggaatca tatgagaaga ccaaaaaaag ttgtcgaatc tcttgctgta actgtcgcca
      421 tcggtgcatc agctactaat cttcaggtaa atgctgaaga aatcgtaaca cctgttactg
      481 aatcagctga aacggtagtt accgcaacac ctaccactat ctctgctgaa caagtagaac
      541 aagctaaaga agtagcatct gcagacgccg aagctgttaa ggtacaagcg gcagttgata
      601 aggctgcagg cgaagctgtc gctaatgaga caaaggctgt tgagggtttg actgaggcag
      661 tagctaaggc atcaacggct caagaagcac ttccagttgc tgaggctgaa gttgccactc
      721 aaacaaaagc cgtaacagat gcacaaacag cagtagaaaa agcagaagaa gttgttgcat
      781 cacaagaagg tgatgttgca aaagcacaag caactgcaga tgctgctaag actgcagaag
      841 cacaagcatc agcaaaattg gaagaagcaa aagctcaacc agttgtaact gctgaaactg
      901 tgaacgcaca aattgcagaa actaagagta cgattgcaac aaaagaaatt gaagtggcac
      961 aaactacagc agctattgcc gcaaccgatg ctaaacttgc cagtgcaaac gaagccgtag
     1021 caaattataa gccaacaacg gtaacagaaa cagtcgcaac aactaactat gtagacctta
     1081 caggtgctga ccgtgacatg gaagatgtta tccgtgaaca gtacccagat ttgaaccctg
     1141 cagattatgc ccgtcaattg gaaacagtca tcttcgatgg tgaagatact cagacaattg
     1201 ttttgacacc agagcaagct gctgaataca aagaaacagg ttcattcact tatgtgtttg
     1261 acgctaaggc cgtatcagaa gaagccgcaa aaatcattgc tgaattgcgt cgcattaacg
     1321 gtatcacttt gaaaccatgg gcaggcactc aagaagattt ggaattgaaa gtaacagata
     1381 gtttcgtagc ttttacccaa aaacgtgctc aagagttgtt gacaaacttt tcacatgata
     1441 gttcattagt agacccagta aatggttatg atatgtcacg agtaggtgag tcattggggc
     1501 ttgaattgcc atacgatatg actggcgggg gtgtcaataa aaaaaaattc tatctcatgc
     1561 agaatttgcc tataacttga tactcaactg gttcagtgat tataacaacg caaatggtgc
     1621 tcgattcgga caccgtttac atatgctttc tgcttctggt aatatcgcta ttggtatggc
     1681 aaccggcgaa gatgctcaat attttgtact actatctgat ggaaaccctc gtgccgttac
     1741 ttacgaacaa tcagttgtta acggtaaact gacacagact ttcaacggta accgtttgaa
     1801 atacttgcca aaacgtacat tcaactatgt agtaagtaca gttgttgatg acagtcaaga
     1861 tttgaaagat gctgtagcta aacttgaagc tgaaaaatca gcactcttga cacaacaagc
     1921 acaagcaact gagactttga atcaagccct tatctcactt gctagcttgg aacaagctaa
     1981 gacagatgtt acacttgcaa atactaaacg cacagtagct attgcagaag cacaagacgc
     2041 ttttgataag gcaagtgcag ccgctaaaac agccacaaca aacttgcaac aagtccttgc
     2101 atcatatgaa gcatcccttt caagcttgtc aacagctaag ggtaacgtga aagtagctca
     2161 agataaattg gcaacagctc aagctaaggt aactgaattg aaagccttgc ttgtaaatca
     2221 aggccaattg cttgcagatt tggatgcagc caaagcacgt ttggaggatg ctactcttgt
     2281 taagagcgaa tcaagtgcat tgttggcaga attgacagcg aaagccaaag catcacaaac
     2341 tgaggcagac cgtctagcaa ccttgtttgc attacaagag caatttaaca cagtcattac
     2401 tgacgatacg gtgacagcaa caccaaaaga tgcaccaaca gttaatgaaa aaccagttct
     2461 taatatcgat gatgttatca aagaaacacc aaaagatgag cagacagtat cagacttgcc
     2521 agttgttaaa accgatactg ataaagagcg agatttaacc gttattggcg aagagggcaa
     2581 tgccgataag gaaaaaacgg ttgttgctcc gacagtttat aaaccacagc caggagtaac
     2641 tgttcaacaa actgctactg gagaaaaagt aacttattca cgtgttgaac gtgctcattc
     2701 attgccaaat acaggctcag aggataacat cgttttgatg ggctttggag ttgtcttagc
     2761 tggtctaggt cttgcaggag caagaagacg tagacacggg taagccataa tataatagaa
     2821 atcttcttac tatttgtagg aagatttttt tattgaatgc agtttatcaa aaaagaagcc
     2881 ctaattttga tttaggactt ctttttttgg agacaatttg gagacagttc aaaccatttt
     2941 atctca
//
LOCUS       DASGAC010000203         2883 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.205, whole genome shotgun sequence.
ACCESSION   DASGAC010000203 DASGAC010000000
VERSION     DASGAC010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2883
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.205"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(163..2520)
                     /locus_tag="U1335_001997"
     CDS             complement(163..2520)
                     /locus_tag="U1335_001997"
                     /inference="COORDINATES: protein motif:HMM:NF012745.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SP_1767 family glycosyltransferase"
                     /protein_id="HEM5232443.1"
                     /translation="MNTPTIPIRVKPISQSLDYILEHSCSVARFGDGEMNIIGGHSIP
                     YQDYDPQLASELKEILGLESDKSLMVCLPEVFENREGYTEAFNHFWLGHLQHYQDYYR
                     QICKAPWYGNAFISRPYMDLADKGLAATYFQTLKQIWTGKDILIVEGKTSRSGVGNDL
                     FQAAKSIQRIICPSKNAYAQIEDILTAIEAYGKGKLVLLMLGPTAKALVYRLSKTGIQ
                     AIDIGHIDSEYEWFTMQAQSKIKLQHKHTAEHNFDQDIVFTEDQDYLRQIVLDLTGEI
                     KHQLPIPQTKVSLLLPIYNETSLTTIEKICKQSYQNIQLILLNYNPEMTIQMEDIRSK
                     SLLDVENIAILKIGSETKLEQDLLKLVEGQYLLSLNHIDDLDDRLLEKAIDSAEKYQS
                     EIVLLENSIFDENDGNYYFYDKLFDEEILRAETVKGYFETSPRHQNYLTNNYAKLFKT
                     SYVKENHINLTQDFTPETYNSDKISYVKENLYVYKKIKEELVSVIVPVYNVEKYLSQC
                     LDSIIHQTYKNLEIILVNDGSTDGSGKICDDYAAKDGRIKVIHQENGGLSDARNKGLD
                     LMTGQFVTFVDSDDYLENNCIHTLYTYACTCKTDISIGKFIKFEENTSQFLFHNHLNN
                     GNKIEFLTGDQCLERHHQYFLGIFVNAWAKLYRTSLFNDSNPCKSIRYPLGVLHEDQY
                     TTHKLFFKSNKIVFVNDYLYVYRVRENSITNTLLSDKRIMDNIRGLEEKIIDFCLLNK
                     DMTLLREHYLFYLNDYKAYLENNHRQNSDVYEFIQKRLGTYSNWK"
BASE COUNT          814 a          479 c          545 g         1045 t
ORIGIN      
        1 ttgaaatatt ctatacaaat gaatagtaag gttgaagata gtttctcaac tatcttttta
       61 tcaataatca tgtgagaaat gcctaatact aagggtgtac aggtgtttga ttattttgtg
      121 tctgatgtct gtagtgaaaa agtcaatagt tcctagatgc acttatttcc aattagaata
      181 ggtgcctaat cttttttgta taaattcata tacatcactg ttttgtctat ggttattttc
      241 tagataggct ttgtagtcgt ttaggtaaaa cagataatgc tctctcagaa gtgtcatatc
      301 tttgttaagt aagcagaaat ctattatttt ctcctctaag cctctgatat tatccattat
      361 tcgtttatca gataagagag tattggttat gctgttttcc cgtaccctat acacatatag
      421 gtagtcgttg acaaaaacaa ttttattgct tttaaaaaat agtttgtgcg ttgtgtattg
      481 gtcttcatgt aaaactccaa gagggtatct aattgattta catggattac tatcattgaa
      541 taggcttgtt ctgtatagtt ttgcccaagc atttacaaaa attcctaaaa aatactgatg
      601 atgtctttct agacattggt ccccagttaa aaactctatt ttgttgccat tgttgagatg
      661 attatgaaat aaaaattgtg acgtattctc ttcaaatttt ataaatttac caattgaaat
      721 atcggtcttg caagtacaag cgtatgtata tagggtgtga atacaattgt tttcaagata
      781 atcatcacta tcaacaaagg ttacaaactg acctgtcatt aggtcaagtc ccttattgcg
      841 agcatcagat agtcctccat tttcttgatg aatgaccttt attcgaccat cttttgctgc
      901 atagtcatca caaattttgc ctgagccatc tgttgaacca tcgttaacga ggatgatttc
      961 aaggttttta taggtttgat ggataatact atctagacac tgtgataaat acttttcgac
     1021 attgtagacg ggcactataa cgcttaccag ttcttctttg attttcttat agacataaag
     1081 attttccttc acatatgaaa tcttatcgct attataagtt tctggtgtga aatcttgagt
     1141 tagattgata tgattttcct ttacatagct tgttttgaat agcttagcat agttgtttgt
     1201 taaatagttt tgatgtctag gggacgtttc aaagtaccct tttacagttt cagctcttag
     1261 aatttcttca tcaaatagct tatcgtagaa atagtagtta ccatcatttt catcaaagat
     1321 agaattttcc agtaacacaa tctctgattg gtatttttca gcactgtcta tggctttttc
     1381 taataatcta tcatccaggt catcgatatg gttgaggctg agcaggtatt gcccctcgac
     1441 tagcttgagt aggtcttgtt ctagcttagt ttcggagcct atctttagga tggctatatt
     1501 ttccacatca agtaaggatt tggagcgaat atcctccatt tgaatagtca tctcagggtt
     1561 gtaatttagt aagataagtt ggatattctg gtaactttgc ttacaaattt tttcgatagt
     1621 tgttagactg gtttcattgt aaattggtag tagcagactt acttttgttt gtggaattgg
     1681 caattgatgt tttatctcac ctgtcaagtc aaggacaatt tgtcgcagat agtcttggtc
     1741 ctctgtaaaa acgatatcct gatcaaaatt gtgttcagct gtgtgtttgt gctggagttt
     1801 gattttggac tgggcttgca tggtaaacca ttcgtactca gaatcaatgt gaccaatatc
     1861 aattgcttgg atacctgttt ttgacaagcg atagaccagg gcttttgctg ttggacccaa
     1921 cattagcaag actaattttc ctttgccgta tgcctcgata gcagttagaa tatcctcgat
     1981 ttgggcatag gcattcttag aaggacatat aatccgctgg atggattttg cagcttgaaa
     2041 taggtcatta cccacaccag agcgggaagt cttgccttca acaatcaaaa tgtctttccc
     2101 tgtccaaatc tgttttaagg tctggaaata ggtagcagct aaacctttat ctgccagatc
     2161 catataggga cgggagataa aggcatttcc ataccaaggt gctttacaaa tttgacggta
     2221 gtagtcttgg tagtgttgta aatgtcctaa ccaaaaatga ttgaaagctt ctgtatagcc
     2281 ttctctgttc tcaaaaacct cgggtagaca aaccattagg gacttatcac tttcaagacc
     2341 cagtatctct tttagttcgc tagctagctg agggtcgtag tcttggtaag ggatgctgtg
     2401 gcctccaata atgttcatct ctccatcacc aaatcgtgcg acagagcagg aatgttccaa
     2461 aatatagtct aggctttgag aaataggttt tactcggatg gggatagttg gtgtattcat
     2521 aggaaattgc ttgtttcttt ctgattagga ggctcttatt cactaaatag ttccaatttg
     2581 ttcaaaacac gtaggtattc taagctgtcg ctacactgat taacttccat ttcatatttg
     2641 gtgttttgga gtacgtcacg gagttttcga cattatagac agggacaata atactgatta
     2701 atggggtatt caaaattttt tccttcttgt atagatatct agactatttt atcatattgg
     2761 tactgtttgt gcaccttttt acaaatattt ctactggtaa taatctatag atatattagc
     2821 aaaaagtgag ggtgagtatt gctgttttac ttcatatgaa aattatgcta aaatcgagtg
     2881 ata
//
LOCUS       DASGAC010000204         2861 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.206, whole genome shotgun sequence.
ACCESSION   DASGAC010000204 DASGAC010000000
VERSION     DASGAC010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2861
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.206"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            20..277
                     /locus_tag="U1335_001998"
     CDS             20..277
                     /locus_tag="U1335_001998"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232444.1"
                     /translation="MAYTKSVKKTRTGELKMREKKELVITGKHVLHTTMIVYTFFIGF
                     AFMSQNFELSLLIPYGFYLLTLILEKMEKSGKTLFEIRIER"
     gene            305..487
                     /locus_tag="U1335_001999"
     CDS             305..487
                     /locus_tag="U1335_001999"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232445.1"
                     /translation="MKNKKYYAVLIPIVLWLVFKICANLSDDSLKDYFNILALSNPGL
                     IIAFAILTNKEKNKEK"
     gene            524..1225
                     /locus_tag="U1335_002000"
     CDS             524..1225
                     /locus_tag="U1335_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM5232446.1"
                     /translation="MKRVKNILKFIGLILVIIAINITPMRLIAIQDSMSGVMQWGSGI
                     GYLVIATAIVMWTWKRYKKGLPDQQKRFTFTWKDFGFALLFFLAGRVVGIGGTLLTQL
                     VTGNATTANDAALLATNQQLAKMFPLYFVAFHVAIGVFAPFMEELVFRGLFSSYFFKE
                     NQKWLKLIISSAVFALLHAIHPIELPLYFLLGAVFYLAYARRGNIVDAILVHILNNSL
                     LVIFSIIGYLLVLFG"
     gene            1247..1441
                     /locus_tag="U1335_002001"
     CDS             1247..1441
                     /locus_tag="U1335_002001"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232447.1"
                     /translation="MTMIEKLDKKYQEFETAYESSSFAMKFLVWVGIAMTLMTLGSVL
                     VPAIYSAGQDFGAFLYSVFG"
     gene            complement(1536..1877)
                     /locus_tag="U1335_002002"
     CDS             complement(1536..1877)
                     /locus_tag="U1335_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM5232448.1"
                     /translation="MVYEVHLSAKAEQDLEEIYQYYVREFSESSARKVLASLSTAILT
                     LEIFPEGYIDLDARLGRALFPEGKTRMIPGKQHLIFYLIRGSRVDILRIRGARTDYLN
                     NLDNLFKQTLK"
     gene            complement(1867..2154)
                     /locus_tag="U1335_002003"
     CDS             complement(1867..2154)
                     /locus_tag="U1335_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HEM5232449.1"
                     /translation="MTGLVRDRQYNFRVNAQILEQAKIILSEKDMTLSDALNLFVERV
                     VEEQDLPIKTVEEARAEAFLDELIAELDEGYQEVLSGDTTPAREVFAKYGL"
     gene            2380..>2861
                     /locus_tag="U1335_002004"
     CDS             2380..>2861
                     /locus_tag="U1335_002004"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232450.1"
                     /translation="MAKWIKSILQVLGLNFVIQAPVIAEMSWGKMDDTVVGYLIHVLC
                     WFILTALIFWLLGTLRKKYRDDSLQVREYSYVKLFGLVLLGIVIKIVLSNILLLLSGS
                     TIDNSSMLDLFQSKYGWMALLSVNILGPIREEYLYRGIFQERIRNKAYPMISVFVTTA
                     "
BASE COUNT          844 a          459 c          598 g          960 t
ORIGIN      
        1 atgaaaaaat ggagttgatt tggcttatac taaaagtgta aagaaaacaa gaacaggaga
       61 attgaagatg agagaaaaaa aggaacttgt tattacaggg aaacatgtat tacacacaac
      121 aatgattgtc tatacattct ttattggatt tgcattcatg agtcagaatt ttgagttgtc
      181 gctgttgata ccatacggat tttatctact tacccttatt cttgagaaaa tggaaaaaag
      241 tggcaaaacg ttatttgaaa tcagaattga gcgataagta aaatgatagt gaggagaact
      301 gaagatgaag aataaaaaat attatgcagt tttgattccc attgtgcttt ggctagtttt
      361 taaaatctgt gcgaatttgt cagatgacag ccttaaagac tatttcaata ttttagcact
      421 cagtaatcca ggtctaatca tcgcttttgc cattttaaca aataaggaaa aaaacaagga
      481 aaagtaagct aataaagaaa acaagaacaa ggaggactag cttatgaaac gtgtcaaaaa
      541 tattttaaaa tttattggtt tgattcttgt catcattgcg attaacataa ctccgatgcg
      601 attgattgcc atacaggatt cgatgtcagg tgtcatgcag tgggggtctg gcattggcta
      661 tctagtcatt gcgacagcta ttgtgatgtg gacttggaaa cggtataaga aaggtctacc
      721 tgatcagcaa aaacggttca catttacttg gaaagatttt gggtttgctc tgctattttt
      781 cttagccgga cgagttgtcg gtattggcgg aacgttattg acccagttgg ttactggcaa
      841 tgccaccacg gccaacgatg cagcactttt ggcaacaaat cagcaattgg cgaagatgtt
      901 tccgctatac tttgttgcct ttcatgttgc aataggtgtc tttgctcctt ttatggaaga
      961 gcttgttttt agaggtttgt ttagcagtta tttcttcaaa gaaaatcaaa aatggctaaa
     1021 attgataatc agttcagctg tcttcgctct tcttcatgcg attcatccaa ttgagttgcc
     1081 actttacttc ttgcttgggg cagtcttcta tttggcttac gctcgccgtg gcaatattgt
     1141 ggatgcgatt cttgttcata tattgaacaa tagcctactg gttatcttct ccattattgg
     1201 ttatttgttg gtactgtttg gttagtgatg ttaaaggagt ttagttatga caatgataga
     1261 aaaattagat aaaaaatacc aagaatttga aacagcttat gagtcttcct cgtttgcaat
     1321 gaaattctta gtatgggtag gaatagctat gaccttgatg actcttggtt cagttcttgt
     1381 accagcgatt tattctgcag ggcaagattt cggtgccttc ctatattctg tttttggatg
     1441 agggagtggt agaaaataaa atgaaaaaag ctgaggaatc agctttttgt ttacgcttgt
     1501 ttcgttagac ttgttgaagg tgggggagtt gctcgttatt tgagggtttg cttgaataga
     1561 ttgtctaggt tgtttaggta gtctgtcctt gctcctctaa tgcgaaggat atctacacga
     1621 gagccacgaa tcaaatagaa gatgaggtgc tgttttccag gaatcatcct cgtttttcct
     1681 tctgggaata gtgctcgtcc cagacgagcg tcgaggtcaa tatatccctc tggaaatatt
     1741 tctaaggtca agatagctgt gctcagagat gcaagcacct ttcgagcact tgattctgaa
     1801 aattcacgga cataatactg gtagatttcc tctaaatctt gttcggcttt agcagataaa
     1861 tgtacttcat agaccatatt tggcgaatac ctcacgagca ggtgtcgtgt ctcctgataa
     1921 aacttcttgg tagccttcat caagctctgc aatcaattca tctagaaaag cctctgcacg
     1981 tgcctcttct accgttttta ttggcaaatc ttgctcttca accactcttt ctacaaataa
     2041 attaagagca tcagaaaggg tcatatcttt ttctgataag attatttttg cttgttccag
     2101 tatttgtgca tttactctaa aattatattg tctatcccta accaatcctg tcattgtctt
     2161 caactccaaa ttctaatatg tataacaata gtgtagctat ttgttttaca tctgtcaagc
     2221 gataatctgg cactgaatat cttggataag attcggtgac tttgaaaaaa tggtcattca
     2281 ttacaaaata acgaccgttc gtgacaggaa tgagaatagt gtgttgattt gctatatact
     2341 aagtttataa aaagattgga ttagcaaggg agatatgaaa tggccaaatg gataaaaagt
     2401 attctacagg ttttggggtt aaactttgtc atacaagccc ctgtaatagc tgagatgtct
     2461 tggggaaaga tggatgacac agtagtaggt tatctcatac atgtactatg ttggtttatt
     2521 ctaacggctc tcatcttttg gttattagga acattacgga aaaagtatcg tgatgatagt
     2581 ctccaagtcc gagaatatag ttatgtaaaa ctatttggat tggttttgct aggaattgtt
     2641 ataaagattg tactatcgaa tattttattg ctattgtctg gttcgaccat cgataatagt
     2701 tccatgttag atctatttca gtccaaatat ggttggatgg ccttgcttag tgtaaatatt
     2761 ttggggccta ttcgtgaaga atatctatat agaggtatct ttcaagaaag aattaggaat
     2821 aaggcttatc caatgatcag tgtctttgtc acaacggcaa t
//
LOCUS       DASGAC010000205         2857 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.207, whole genome shotgun sequence.
ACCESSION   DASGAC010000205 DASGAC010000000
VERSION     DASGAC010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2857)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2857)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2857
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.207"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            115..1323
                     /locus_tag="U1335_002005"
     CDS             115..1323
                     /locus_tag="U1335_002005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232451.1"
                     /translation="MKNMVQFVCPKCYSENRIKDIIYYSPSKMRVYKPVVIGAGIEFP
                     VKDAITDQYCDGASIQFSTVVSESNLSPMGIFSEDGRPLIAICKYCYENSEHTEIPEE
                     IFRGDYKTFVIAGSKGVGKTELFTLMTDDIQRYGHKYFEGDSVSYIESSEEKSRRRQR
                     IENLKRNGRLEGTANDSRESIIFKVKSSSSKEDVYSIYDAAGERFDDYSSSTLASHAY
                     FKYAKGIFLLIDILQLSAVKARISPERRTEYSGTRNQDISSLVSNVTKIIRSSRNISQ
                     GVKISVPIAVILTKVDVILDDFSDIFDEGFVKIGFTKDKSIERIEQINQVTEKFLNNI
                     GEVALLSQLRSEYSNIKFFTLSSRGLNFEAGEDEDIESFLVELPLIWLMKGIENNGLK
                     AKFIAWLGGQ"
     gene            1323..>2857
                     /locus_tag="U1335_002006"
     CDS             1323..>2857
                     /locus_tag="U1335_002006"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232452.1"
                     /translation="MGHQLIYTVARYGVKGQGHCIYSYDEHFPQERLRDISYYSKFRL
                     PQTLNVADITNIAFENRILPSTFAYFYDGKYNFFSKRYLGKEYLNRDARPGNFLNHWV
                     ILEELMQHPIEKFRSPTFRTSMLVEEVDNIDIPAYLSDKFELLSGPITLNVVQEFIRL
                     ENRKELVSQLLSAVIDEQISSKKKTIVIVDEFDNIPLWIASILYSFPLSLSKKLSFST
                     FEYSPNESYVQSERFDIVGVIPEGTDFQSRNSMFFRLFDMKNRIFMNESVSKYRYSDW
                     AVTALLENATDIENIDKLLTESFDYIEIDKNIDSILSYYEYISYQTSLDKFRDSMSVI
                     SEYGKTHTQFQFFEQLLESPILPSILSTNYRRDVIAHIRARNKKSQLSLFEDYIFLLQ
                     SSEQEGRYNPYLLNQLTDDFVSFDANIKVEILNKVNDIELFQELFSVYLSFDLDEALQ
                     SVKRLPVVRQRKVEPILLREPDKALLFIKRAIIDLWDPSLVHHLISLNVDKPPVTISN
                     SLLT"
BASE COUNT          962 a          375 c          586 g          934 t
ORIGIN      
        1 tccaaaaaat acacattatt ctttagtaat ggggaatcct attcaaagcc taagtatttt
       61 gaggttatgt aaagaatgat tatttgagat gacattggta agaaaggaga acgtatgaaa
      121 aatatggttc agtttgtttg tccaaagtgt tatagtgaaa ataggataaa agatattatt
      181 tattactctc cttcaaagat gagagtatac aaacctgtcg ttattggtgc ggggatagag
      241 tttcctgtaa aagatgctat tacggatcaa tattgtgatg gggcaagcat tcaattttcg
      301 acagtagtaa gtgaaagtaa tttaagtcca atgggaatct tttcagagga tggaaggccc
      361 ttgattgcta tttgtaagta ttgttatgag aatagcgaac acacggagat tccagaagaa
      421 atatttaggg gggattataa gacttttgtc attgctggaa gcaaaggagt tggtaaaacg
      481 gaattgttta cattaatgac agatgatatt caacgatatg gtcataaata ttttgaagga
      541 gattcagtta gttatattga atcaagtgag gaaaaatcac ggcgacgaca acgcatagag
      601 aacctaaaaa ggaacggacg tttagagggg actgctaatg atagtagaga gagtattatc
      661 tttaaagtaa aaagttcttc atcaaaagaa gacgtttatt cgatttatga tgctgctggt
      721 gaacgatttg acgattattc cagtagcact cttgcgagtc atgcttattt taaatatgca
      781 aaaggtattt ttctattgat tgatattttg caactttcag ctgtaaaagc acgtataagt
      841 ccggaacgta gaacagaata ttcaggaact cgaaaccaag acatatcctc tcttgtatcg
      901 aatgtaacaa aaataattcg ctcttcgaga aatatttctc aaggagtaaa aatatcggtg
      961 ccgatagcag ttatattaac aaaggttgat gtgattttgg atgatttttc cgatatattt
     1021 gacgaaggat ttgtaaaaat tggttttaca aaagacaaaa gtattgaacg aattgaacaa
     1081 atcaatcaag ttacagagaa atttttgaat aatataggag aagttgctct tttaagccaa
     1141 ttaagaagtg aatatagcaa tattaagttt tttaccctct catcaagagg attaaatttt
     1201 gaggcaggag aagatgaaga tattgaatct tttcttgtgg agttgccgct catatggctg
     1261 atgaaaggaa ttgagaataa tggtctaaaa gcaaagttca tagcatggtt gggaggtcaa
     1321 taatgggaca tcaattaatt tacacggtag caaggtatgg ggttaaaggg caaggtcatt
     1381 gtatttatag ctatgatgaa cattttccac aagaacggct aagggacatt agttattatt
     1441 ctaagtttag attgcctcag actttaaatg tagcagatat tacaaatatt gcgtttgaaa
     1501 ataggatact tccgtcaaca tttgcctatt tttatgacgg gaaatataat tttttctcta
     1561 agagatattt ggggaaagag tatttgaata gggacgctag gcctgggaat tttttgaacc
     1621 attgggtgat acttgaagaa cttatgcaac atcccattga gaaatttaga agtcctactt
     1681 ttagaacatc catgttagta gaagaagttg acaatattga tattcctgct tatctatctg
     1741 ataagtttga gttgttaagt ggtcccatta cattaaacgt tgttcaggag tttattcgat
     1801 tggagaatcg taaggaattg gtatctcaat tactatctgc tgttattgat gagcaaataa
     1861 gttcgaagaa aaaaacaatt gtaattgttg atgaatttga taatattcca ctatggattg
     1921 catccattct ttattctttt cccttgagct tatcaaaaaa gttaagtttt tctacttttg
     1981 aatattcacc aaatgagtca tatgtacaga gtgaacgttt tgacattgta ggagtcattc
     2041 cagaaggaac ggattttcag tcacggaatt cgatgttctt ccgtcttttt gacatgaaaa
     2101 atagaatatt catgaatgag tcagttagta aatataggta ttcggattgg gcagttacag
     2161 ccttgttgga gaatgctact gatatagaga atattgataa gttactaacc gagagttttg
     2221 attatattga aatagacaaa aacattgatt ctatactatc gtactatgag tatataagtt
     2281 atcagactag tttggataag tttagagatt caatgtctgt tatttctgag tatggtaaaa
     2341 cacataccca gtttcagttt tttgaacagt tgttagaaag tccgatacta ccaagtattt
     2401 tatcaacaaa ttatcggaga gacgtcattg ctcatattag agcaagaaat aagaagtcgc
     2461 aactttctct ttttgaagat tatatatttt tgttacagtc ttcagagcaa gaggggcgat
     2521 acaatccata tctactcaac cagcttactg atgatttcgt gtcatttgat gcaaatataa
     2581 aagtagaaat attgaataag gtgaacgata ttgaattatt ccaagaactg tttagtgttt
     2641 acctaagttt cgatttagat gaggctctac agtcggttaa gagattgcca gtagtacgac
     2701 agagaaaggt agaaccgata ctgcttcgtg aaccagataa ggctttgttg tttatcaaaa
     2761 gagccattat agatttgtgg gatccaagtt tggttcatca tttgattagt ctaaatgtag
     2821 ataaaccacc agttacaatt tctaatagtt tgcttac
//
LOCUS       DASGAC010000206         2829 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.208, whole genome shotgun sequence.
ACCESSION   DASGAC010000206 DASGAC010000000
VERSION     DASGAC010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2829)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2829)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2829
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.208"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..902)
                     /locus_tag="U1335_002007"
     CDS             complement(<1..902)
                     /locus_tag="U1335_002007"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009568566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HEM5232453.1"
                     /translation="MKNEFLNFEQIDRATWQQLHRKTTIPLSQSELNSIKSFNDRIQL
                     HEVSDIYLPLVNLIHIYRKARKDLNFTKSLFLQKTIKPQPFIIGVSGSVAVGKSTTSR
                     LLQILIARTFKHAKVELVTTDGFLHPNAVLEERQLLNKKGFPESYDMEKLIDFLDKIK
                     NGYDCQIPVYSHEIYDIVPNKTQDIKSPDFLIVEGINVFQNPQNQRLYVSDYFDLSIY
                     VDADVEHIETWYLERFQKLLTLAKNDPKNYYHRFTQMTYPEILSIAQNTWKNINLANL
                     EKFIEPTRNRADIILHKAENHEID"
     gene            1011..1601
                     /locus_tag="U1335_002008"
     CDS             1011..1601
                     /locus_tag="U1335_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM5232454.1"
                     /translation="MSNMYYEKNPTVAHDIHEIHVNLLDTPMSFMTDAGVFSKKMVDY
                     GSQVLLKTLHFEKGASVLDVGCGYGPIGLTLAKVFSTKTTLIDINSRALDLATKNAER
                     NGVTAKIYQSNIYENVDETFNHIVSNPPIRAGKSVVHEVIAGAFQRLEANGTLTIVIQ
                     KKQGAPSAKAKMEEVFGNCQIIKKDKGYYILESVRE"
     gene            1598..>2829
                     /locus_tag="U1335_002009"
     CDS             1598..>2829
                     /locus_tag="U1335_002009"
                     /EC_number="2.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018543466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-nucleoside phosphorylase"
                     /protein_id="HEM5232455.1"
                     /translation="MRAVDLIQKKRDGLELSSEEIKWLIDGYVAGTVPDYQMSALAMA
                     IYFKGMSTREISDLTMSMVATGEQIDLSAIPGIKVDKHSTGGVGDKVTLILAPLVASF
                     DIPVAKMSGRGLGHTGGTLDKLESIKGYQIEVSQADFIKQVQDTGVAVIGQSDNLVKA
                     DKLLYALRDVTATVDIIPLIASSVMSKKIAAGADAILLDVTVGEGAFMKTVEEARVLA
                     QTMVDLGKAVGRKTVAVLTDMSQPVGTSIGNRLEILEAIEILQGKGREDVTEFICELA
                     QIMLGLANVEKSIEEVRQHIDNGAALKKFEEMVLAQGGDLEDLYRPVQVTQQVPVLAE
                     EDGYLVGLPALEFGLFAMKLGAGRAVKTDDLDYETGIVFHKKVGEAVSKGEQIATIYA
                     NENISENMLTNFQKNVKI"
BASE COUNT          866 a          461 c          641 g          861 t
ORIGIN      
        1 ttatcaatct catggttttc ggccttatga agaataatat cagcccggtt tctggttggt
       61 tcaatgaatt tttctaagtt agctagatta atatttttcc aagtattctg ggcaatagat
      121 agaatctcag ggtatgtcat ctgggtaaaa cgatggtaat agtttttagg gtcgtttttt
      181 gccaatgtca ataatttttg gaatcgctcc aagtaccagg tttcaatatg ctccacatca
      241 gcgtcaacgt atatagatag gtcaaaatag tcactgacat agaggcgctg gttttgtgga
      301 ttttgaaata cattgattcc ttcaacaatc aagaaatctg gagacttaat atcctgagtt
      361 ttgttgggga caatatcata gatttcatgt gaatagacag gaatttggca gtcgtagccg
      421 ttttttatct tatcaaggaa atcaatcaat ttctccatgt cataggattc aggaaaacct
      481 tttttattta acagttgccg ttcttctaag accgcatttg gatggagaaa accatctgtt
      541 gtcactaatt caaccttggc gtgtttaaat gtccgagcaa taagaatttg cagcaatcta
      601 ctagttgttg atttgccgac agcaacactt ccggaaacac caatgataaa tggttgtggc
      661 ttgatagtct tttgtagaaa taaactcttc gtaaaattga ggtctttgcg tgctttccga
      721 tagatatgga taagattaac caaaggaaga tagatgtcag aaacctcatg taattgaatg
      781 cggtcgttaa aacttttaat agaatttagt tcactttgac taagtggaat ggtagtcttg
      841 cggtgtagtt gttgccaagt ggctcggtca atttgttcaa aatttaaaaa ttcgtttttc
      901 atacataatt cttcctatag gtaagcgttt caatatcgat ttcattttat catatttttt
      961 atgtaagaaa aactcttgaa aacgttttta ggaaatgtta taataagtac atgtccaata
     1021 tgtattacga aaaaaatcct acagtagcac atgatattca tgagatccac gtaaacttac
     1081 tagacacccc aatgtctttc atgacagatg caggtgtttt tagcaagaag atggttgatt
     1141 atggtagtca agtgctttta aaaacccttc attttgaaaa aggggcatcg gtgttggatg
     1201 ttggttgtgg ttatggacca attggtttga cacttgctaa ggtgttcagc accaagacaa
     1261 cactgattga tattaatagc agagctttgg atttagctac aaaaaatgct gagaggaatg
     1321 gtgttaccgc taaaatttat caatccaata tctacgaaaa cgtggacgaa acattcaatc
     1381 atattgtttc aaatccacct attcgggccg gaaaatcggt tgtacatgaa gtaattgctg
     1441 gagcctttca acgcttagag gcaaacggaa ccttgactat tgtcattcaa aagaaacaag
     1501 gtgcaccgag tgccaaggct aagatggaag aggtgttcgg caactgccag ataataaaga
     1561 aagacaaggg ttactacatc cttgaaagtg tgagagaatg agagcagttg atttaattca
     1621 aaaaaagcgt gatggcttag aactatcgtc tgaagaaatc aaatggttga ttgatggata
     1681 tgtagctggg acagtaccgg attatcaaat gtcagccttg gcgatggcga tttatttcaa
     1741 agggatgtca acacgtgaga tttctgattt gacaatgtct atggttgcaa cgggtgaaca
     1801 gattgatttg tctgcaattc caggcatcaa ggtagataag cattctacag gtggtgtcgg
     1861 agataaggtc acactcatct tagcgccatt ggtagcaagt tttgatattc cagttgcaaa
     1921 gatgagcggt cgtggacttg gtcatactgg cggaaccttg gataagttag agtcaatcaa
     1981 aggataccag attgaagtta gtcaagcaga tttcatcaag caagttcaag atactggtgt
     2041 tgcagttatc ggacagtcag acaatcttgt taaagctgat aaattgctct atgcccttcg
     2101 agatgtgaca gcaaccgttg acattattcc actgatcgcc agctcggtta tgtctaagaa
     2161 aattgccgca ggtgcggatg cgattcttct agatgtaaca gtaggagaag gtgccttcat
     2221 gaagaccgtt gaagaagcac gggttctagc tcaaaccatg gtggatcttg gcaaggcggt
     2281 ggggcgtaag accgttgctg ttttaactga catgtctcaa ccagttggaa cttcgattgg
     2341 aaatcgtttg gaaattttag aggctattga aattttacag ggtaaaggtc gagaagatgt
     2401 taccgaattt atctgtgaat tagcccaaat tatgttgggg cttgcaaatg ttgagaaaag
     2461 cattgaagaa gtacgccaac atattgacaa tggtgcagct ttgaagaaat ttgaagagat
     2521 ggtccttgct caaggtggtg acttagaaga tttatatcgt ccagttcagg ttacacagca
     2581 agttccagtt cttgcggagg aggatggata ccttgtaggg cttcctgcgt tggaattcgg
     2641 tctctttgca atgaaacttg gtgcaggtcg cgcagtcaag acagacgatt tagattatga
     2701 aacaggtatt gtcttccata agaaagtagg ggaagctgtt tctaagggtg aacaaatcgc
     2761 aacgatttat gccaatgaaa atatttcgga aaatatgctt acaaatttcc aaaaaaatgt
     2821 taaaataga
//
LOCUS       DASGAC010000207         2791 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.209, whole genome shotgun sequence.
ACCESSION   DASGAC010000207 DASGAC010000000
VERSION     DASGAC010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2791
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.209"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            7..321
                     /locus_tag="U1335_002010"
     CDS             7..321
                     /locus_tag="U1335_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000331856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5232456.1"
                     /translation="MDFRKRVIAYVQSGHTKKETCDLFGIGTDTLYRWETQLKNEGHL
                     NRKPRSRSPRKLPLDRLEAYVKEHPDAFLKEIAEHFNCSIPSVWAALKKVNITLKKDN
                     NL"
     gene            341..841
                     /locus_tag="U1335_002011"
     CDS             341..841
                     /locus_tag="U1335_002011"
                     /inference="COORDINATES: protein motif:HMM:NF033545.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5232457.1"
                     /translation="MRRYLEVLACFPDTPIVYIDETGIDTYLYRHKARAPRGEKVYDK
                     VSGRRFERISVVAGQTGSKIIAPLLYHGTMTAELFIKWYQEQLLPSLTEPHVIIMDNA
                     AFHPKKQLDELAVAKGHYFLPLPPYSPELNPIERFWAGLKRKVVELLRRFQSVEYCLE
                     CYFKAK"
     gene            complement(1491..2549)
                     /locus_tag="U1335_002012"
     CDS             complement(1491..2549)
                     /locus_tag="U1335_002012"
                     /inference="COORDINATES: protein motif:HMM:NF012606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylinositol-specific phospholipase C"
                     /protein_id="HEM5232458.1"
                     /translation="MNTKKKISFALTACLGLFLLFPTSTHAHYDRAFWYEEQVTTPHI
                     EQYTDWMSTIPDNRFLGELAIPGTHDSMAHSNHLPFRDIVRTQTMNLQQQLESGIRYL
                     DIRLAYMGDHFALYHGSIALGYQFEEVLTTIQNYLISYPSETILMRIKQENTHASDPE
                     MFTLFESYYQRYSSLFWNPMTSSNGYNPTLGEIRGQIVLLPDVLSIEHGINYRFVITQ
                     DQYHLNTNWDLYKKWEAIKNHINQANTSSIDFIFMNYLSGSGGSFPYFVASGHVRPAT
                     DASRLSTGLTEPGFRHRYPDFPRTARLGVFATISFEGTNTLVADYLRNNQIRRPGIII
                     SDFPGERLINEVIQCNYR"
BASE COUNT          899 a          480 c          595 g          817 t
ORIGIN      
        1 tacggaattg attttagaaa acgcgttatt gcctatgtcc aatcaggaca cacaaaaaag
       61 gaaacctgtg acctatttgg tattggaacc gataccttgt accgttggga gacacagctg
      121 aaaaatgaag gacatctgaa tcgtaaacca cgctctcgta gtcctcgcaa acttccgctt
      181 gaccgcttgg aagcctatgt caaggaacat ccagatgctt tcctgaaaga aattgcagag
      241 cattttaact gtagtattcc ttctgtttgg gcagcactca aaaaagtgaa tattacttta
      301 aaaaaagaca acaacctata aagaacaaga tagcgaaaaa gtgagacgct atcttgaagt
      361 tttagcctgc tttcctgaca caccgattgt ttatattgat gagacgggca ttgatactta
      421 tctttatcgt cacaaagcta gagcacctcg aggagagaaa gtatacgaca aggtaagtgg
      481 acgcagattc gaaagaattt cggtagtagc tggtcaaact ggttctaaaa ttatagcccc
      541 cttgctttat catggaacga tgacagcgga attatttatc aagtggtatc aggagcagct
      601 attgccatcc ttgacagaac cccatgtcat cattatggat aatgcagctt ttcatcccaa
      661 gaaacaacta gatgagcttg cagtggctaa gggacactat tttcttccgc ttccacctta
      721 ttcccctgaa cttaacccaa ttgaacgatt ctgggctgga ttgaaaagaa aagtggttga
      781 gttattgagg agatttcaat cggttgagta ttgtttggaa tgctatttta aagctaaata
      841 attatatttt agtttacttt tagtactagc tccaactatc tgggagagtg aaacagttcg
      901 gggaactgtt tcagcccgat cctagataca aaaaagcgag aaaaaagatg ctggaaatag
      961 ggcgaaccgc attcgcctca aaagctgtag gcagcttgta cagtctagca gactgtacaa
     1021 ggctggaaat gagacttgcg aaagcaagtc acttacgcaa agtacggcaa agcgagttaa
     1081 cgaagtaatt aaagatagac taaatgtcta taacagccta atgatgcatt tttttattgt
     1141 tgctctcaat gtttcactgt gctatcctta gttcacaact cctatagaat ttttcatgtc
     1201 acaatcaatc acttttattt ttcgtgaaag aagtaatttt ttgttattga tgatatagtc
     1261 tgcttatcga aaatttagtg gttgactatt tttgacttga aacgacaatt aagatataaa
     1321 aaacgaggag tcccccgttg ggaatttcct cgctagtcag ttgaatattt ttatgttgat
     1381 ggtaaaagga attggaaggt tagggtgaga attaggtatg tattgtacga gatgttattt
     1441 atagaacagt attttagctt aaatactaaa catgcaaaaa tatagaacga ttaacggtaa
     1501 ttgcattgta taacttcatt gataagacgt tcaccgggga aatctgaaat gatgattcct
     1561 ggtctacgaa tttgattgtt tcgtagatag tccgcaacaa gagtattggt tccttcaaag
     1621 gaaattgttg caaatacacc gagacgtgct gtgcgtggga agtcagggta gcgatgccta
     1681 aaaccgggtt ccgtcaatcc agtagagagt cgggaagcat cagttgctgg acgaacatgt
     1741 ccacttgcta caaaataagg gaaagaacca ccagaaccac tgagataatt catgaaaata
     1801 aaatcaatgc tagatgtatt tgcctgattg atatggttct ttatagcttc ccatttttta
     1861 tataaatccc aatttgtatt gagatggtat tgatcttgag taataacaaa acgataattt
     1921 attccgtgtt cgatagacaa gacatcaggt aaaagcacaa tctggccacg aatttcgcct
     1981 agtgtaggat tgtatccgtt tgacgaagtc ataggattcc agaaaagaga ggaatatcgt
     2041 tgataatagg actcaaaaag ggtaaacatt tcaggatcag aggcatgagt attctcttgt
     2101 ttaatccgca ttaagatggt ttcacttgga taacttatca agtaattttg aatagttgta
     2161 agaacctctt caaattggta gcccaaggcg attgagccat ggtagagagc aaagtgatct
     2221 cccatatatg cgagacgaat atctaaatat cggattccag actccaattg ttgctgcaaa
     2281 ttcattgttt gcgtacggac aatatcacga aaaggaagat ggttactgtg agccatgcta
     2341 tcatgagttc ccggaatggc aagctctcct agaaaacgat tatcaggaat tgtggacatc
     2401 cagtctgtat attgttcaat atgcggtgtg gtcacttgtt cttcatacca aaaggcgcgg
     2461 tcataatgag cgtgggtaga agtagggaag agcaaaaaaa gacctagaca agcggtcagg
     2521 gcaaaggata tcttcttttt tgtattcata tctatacctc ctcgtatgtt aatcctcaat
     2581 cagcgcttgg ataacataat ataattagtg aaatggttgg taatataatt atagtaaaaa
     2641 aacgttgtta gtttccatcg tggttttttg atattgggac accagcgatt agctgtgaga
     2701 agtcatcacc ttaattatat catagggtaa aaataaaagc gaagaggata gtcactagtc
     2761 ttgagaaaga tagcatttgt ttacgaaagc t
//
LOCUS       DASGAC010000208         2761 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.210, whole genome shotgun sequence.
ACCESSION   DASGAC010000208 DASGAC010000000
VERSION     DASGAC010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2761
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.210"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..975
                     /locus_tag="U1335_002013"
     CDS             <1..975
                     /locus_tag="U1335_002013"
                     /inference="COORDINATES: protein motif:HMM:NF025612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232459.1"
                     /translation="KKYVYETFGKDENLTGLSGKEDIAEYLDDLDKDLERYVNDFEIE
                     EFNIDQKMDFKKVSELFYQFMLQIMKDTVYWSDFEQSLGRFTEIEIDMEEFTDKEGDF
                     NGSVMAYNAEEVGENLKLLKPVISELFSEWISVTYDNWKIFVKNYRKQCYQGRLSKET
                     IILNRDSVFLNFNYTHVLEDFYGIPSENIYHIHGEIGDDLVFGHNLESEDFDNPMDVA
                     THLSPLINSLVKPVGEILNSSHSKEFFEKIKNVEEIYFIGFGLRDKDGVDAPYFRKIF
                     ELIPAVNIYVDEFDIERRNSIQTTLSYWGAQKTERLRFINTNRDIVLC"
     gene            987..2153
                     /locus_tag="U1335_002014"
     CDS             987..2153
                     /locus_tag="U1335_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002367373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEM5232460.1"
                     /translation="MKINNNIPAYRFQGYTDAWELRKLNNIADVRDGTHNSPRYIEFG
                     YPLVTSKNIKNGQVNFEDIQYISSFDYEEINKRSKVNINDILMGMIGTVGNLALVREE
                     PEFAIKNVALIKNIGVVNIEFLYHYLGSYVIERQLQNSLDGGTQKFISLNKIRHLDIA
                     FPSLPEQSAIGTFFSTLDRHITLHQRKLDTLKEQKKTYLKLLFPAKGQTKPALRFQGF
                     EDDWKEVKLGELCDIRTGKLDANAMVENGEYDFYTSGIKKYRIDVAEFEGPAITIAGN
                     GATVGYMHLADGKFNAYQRTYVLTNFKVDRSYIFSEIAKKLPIKIQQEARTGNIPYIV
                     LSMLTELSISLPTLSEQEAIGTFFQTLDQELAQVEDKLASLKEMKKTLLRKLFV"
BASE COUNT          919 a          443 c          565 g          834 t
ORIGIN      
        1 aaaaagtatg tttatgagac atttggtaaa gatgaaaatt tgacaggact ttctggaaaa
       61 gaggatatag cagagtatct tgatgattta gacaaagatt tggaaagata tgtcaacgat
      121 tttgaaattg aggagtttaa tatagaccaa aaaatggatt ttaaaaaggt ttcggagttg
      181 ttttatcagt ttatgttaca aatcatgaag gatacagttt attggtcaga ttttgaacaa
      241 agtttgggac gttttacaga gattgagata gacatggaag agtttactga taaagaaggt
      301 gattttaatg gtagtgttat ggcttacaat gctgaggaag ttggagaaaa tttaaaacta
      361 ctgaaacctg tcatttcgga attgttctcg gaatggattt cagtaacata tgataactgg
      421 aaaatctttg tgaaaaatta ccgtaagcag tgctaccaag gtagattgag taaagaaacg
      481 attatcttaa atagagacag tgtattttta aattttaact acacgcatgt tttagaagat
      541 ttttatggta ttccatccga aaatatttat catatccatg gtgagatagg ggatgatctg
      601 gtttttggtc ataatcttga gagtgaagat tttgataatc ctatggatgt tgctacgcat
      661 ctttcaccat tgataaattc tttggtaaaa ccagttggag aaatcctaaa cagctcacac
      721 agtaaggaat tttttgaaaa aataaaaaat gttgaggaaa tctacttcat aggttttggt
      781 cttcgcgata aagatggtgt agatgctcca tactttagga aaatttttga attgattcct
      841 gctgtaaata tttatgttga tgagtttgat attgaaagaa gaaatagtat tcagaccaca
      901 ttgtcttatt ggggtgccca aaagacagag cgtttaagat ttatcaatac taatagagat
      961 attgtattat gttgagagga gattaaatga aaataaacaa taatatccca gcctatcgtt
     1021 tccaaggcta cactgacgct tgggaactgc ggaagttaaa caatattgca gatgttcgag
     1081 atggtactca taattcccct cgatatatag agtttggata tcctttagtt acttctaaga
     1141 atataaaaaa tggccaggta aactttgaag atattcagta tatttcgagt tttgattatg
     1201 aagaaataaa caagcgttct aaagtgaata taaatgacat tctgatgggg atgataggga
     1261 cagttggaaa tttagcacta gtgcgtgaag aacctgaatt tgcaattaaa aatgttgcac
     1321 taattaaaaa tattggtgta gtaaatatcg aatttctata tcactacctt ggttcatatg
     1381 ttattgaaag gcaattgcaa aatagcttag atggaggaac acagaaattc attagcttaa
     1441 ataagattag acatttggat atcgctttcc cctccctccc cgaacaatcc gccatcggca
     1501 ctttcttctc caccctggac cgccacatca cccttcatca gcgtaagttg gacacgctca
     1561 aggagcagaa gaagacctat ctcaaactcc tctttccagc caagggacaa accaaaccag
     1621 ccctccgttt ccaaggcttt gaagacgact ggaaagaagt gaagttgggg gagctatgtg
     1681 atattaggac tggaaaacta gatgccaatg caatggttga aaatggtgaa tacgatttct
     1741 acacttcggg aataaaaaaa tatagaattg atgttgcaga atttgaaggg ccagcaatca
     1801 caattgctgg aaatggagca accgttgggt atatgcatct agctgatgga aagttcaatg
     1861 catatcaaag aacttatgtt ttaacaaatt ttaaagtgga cagaagttat attttttcag
     1921 aaatagctaa gaaattgcct ataaagatac agcaggaggc aagaacagga aatattccct
     1981 acattgtatt atcaatgttg acggaattat caatctccct ccccaccctc tccgaacaag
     2041 aagccattgg cactttcttc caaaccctcg accaagagtt ggctcaggtg gaggacaagt
     2101 tggctagctt gaaagagatg aaaaagactc tactccgtaa attatttgta taattcaggg
     2161 agtgggaaag aactcgactg gtataaaaag agttcgtcaa caagtcctta tttccagttg
     2221 ttgagctgaa acagtctatt cccagactgt ttcagtccca cccccgcaca gttgattagg
     2281 tcggatttgg agtgtgaaac acgaataaat ctgccaatca accactgcgc tgagatgttg
     2341 acacgaactc taagaagtgg cgctgggctt tttgcctagc ctctcgccct cctaattccc
     2401 attatatttc ttgacgaacg gttgatattc tgatagaatg agcacagaaa aagagttgga
     2461 cggcaatcca attctcagta gaaccgttta agacggtggc tcatatttac agaaataatc
     2521 cgtttaactt gccgaaagtg gggacggatt attttttgtt ttcatcagat gtttcactcc
     2581 ccctaagtca ccatataaaa atcttgatta actgacgata ttttgttaaa ataagcatag
     2641 aaaaagagtt ggacggcaat ccaactccta gtagagccat ttcggtggtt cacaatgttt
     2701 gttttatatt aaaataaaat cgtcagtgtc ccaaaatatt gacggtttta ttttttgttt
     2761 t
//
LOCUS       DASGAC010000209         2694 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.211, whole genome shotgun sequence.
ACCESSION   DASGAC010000209 DASGAC010000000
VERSION     DASGAC010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2694)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2694)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2694
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.211"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(289..1116)
                     /locus_tag="U1335_002015"
     CDS             complement(289..1116)
                     /locus_tag="U1335_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5232461.1"
                     /translation="MTVRLIATDMDGTFLDGQGSFDRERFSRILDQLEQKKIPFVIAS
                     GNGIGRLLQLFQGFEDRLIFVVDNGAHVYQAGKTIIRRAIQQVEVEAILHFFKGRWAD
                     VCLMLSNDGNIYMQAGAGVPFEGADLPIEPAQMTAFQNRVTYLDDLSAYPVSESIYKV
                     GLWVPEARVDKITEAFNQAFHGQLVAVTSGYGSVDILPQGIHKAWGLEQVLTGLDIES
                     EQVMAFGDSDNDIELLSYVGYSYAMENATDKVKAVAKYMAPSHLEAGVLQMLEEYIL"
     gene            complement(1127..1387)
                     /locus_tag="U1335_002016"
                     /pseudo
     CDS             complement(1127..1387)
                     /locus_tag="U1335_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775487.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1701..2639)
                     /locus_tag="U1335_002017"
     CDS             complement(1701..2639)
                     /locus_tag="U1335_002017"
                     /EC_number="1.3.98.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011999807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate oxidase"
                     /protein_id="HEM5232462.1"
                     /translation="MVSTATTLGGFTFDNCLMNAAGVWCMTKEELDAVKNSKAGTFVT
                     KTATLDYRAGNPEPRYQNVPLGSINSMGLPNQGLAYYLDYLLELQETEPERTFVLSLV
                     GMSPDETHEILRTVEASDFKGLTELNLSCPNVPGKPQIAYDFETTETILREVFSYFTK
                     PLGIKLPPYFDIVHFDQAAAIFNQFPLKFVNCVNSIGNGLYIKDESVVIKPKNGFGGI
                     GGEYIKPTALANVHAFYQRLKPEIQIVGTGGVLTGRDAFEHILCGASMVQVGTTLQKE
                     GVAAFERITAELQAIMAEKGYETIEDFRGKLQHLDD"
BASE COUNT          801 a          629 c          478 g          786 t
ORIGIN      
        1 gcagactgtg gtatccagtt aatttctcaa ctcagaaaaa acatgatagg ttattcatgg
       61 ctagaaaatt acaaaataag tcgattgagg aaaccagtgg agactgtatt ttctagttta
      121 gagcagtttg gaatggaggc tttacgttgt cgaaacattc aggcgctcaa atttaagaca
      181 gaggcaatat tacttattta ttctcttttg cttaaaagca gtcatactga atttggtatc
      241 agtttaaaat attcccttgc ttacgcttga ttaactagcg caacgggttt ataaaatata
      301 ttcttcaagc atctgtaata caccagcttc caaatggctt ggagccatgt atttggcaac
      361 cgccttgacc ttgtctgtcg cattttccat ggcataggaa tagccaacgt aggacaataa
      421 ctcaatatca ttgtctgaat caccgaaggc catcacttgt tcagattcga tatctagacc
      481 ggtcaaaacc tgttccaaac cccaggcctt atggataccc tgcggtagaa tgtcaacgga
      541 accataacca ctggttacag ccaccaactg accgtgaaaa gcctgattaa aggcttccgt
      601 tatcttatct acacgcgctt caggaaccca gagaccaacc ttgtatattg actctgaaac
      661 tggataggca ctgaggtcgt ctaaatatgt cacacgattt tggaaggcag tcatttgtgc
      721 gggttcaatg ggcaaatccg ccccttcaaa tggtacacct gccccagcct gcatataaat
      781 atttccatcg ttcgacaaca tcagacatac atccgcccaa cggcctttga aaaaatgcag
      841 tattgcttcg acttccactt gctgaattgc tcgccgaatg atggttttgc cagcttgata
      901 gacatgggca ccattatcta ctacaaagat taatctgtct tcaaatcctt ggaataactg
      961 aagtaatcta cctattccat tgccactagc gatgacaaat ggaatctttt tctgttctag
     1021 ttgatccaag atccgtgaaa atcgctctct gtcaaaactc ccctgaccat ctaaaaaggt
     1081 cccatccatg tctgttgcga ttaatcgaac tgtcataaag cactccttac caattaagat
     1141 ttacaaaatc cttcatttct tgataggcta gatccacacg cgcctgtatt tcttcatcta
     1201 gctgcccata atattgacca ccagctaccc agtcctctag gatataggtc tggtaggaaa
     1261 attgttcgta tccctctgtt gaataagtcc cttttgaaag gcgattgacc caggtcggat
     1321 gggcttgagc agtttgaata cttgtctgcc cattctcttt ttgaatcctt atatccatca
     1381 agactcccta cttaagaacc tttgttcaaa atacagtcag tagtccctca aaaaactctt
     1441 tcttccataa aagtacatca cttataaata gaggttctaa tattagtata cgacattttt
     1501 gctaaaaaat ctaaataaaa tcagaattcc atcccaaaaa tatatgtttc tgactatgta
     1561 ttccattcct caaacgatta tcagaccgat cttcacagac catttaaaaa gagctaacat
     1621 tatcccctcg cgactctcta aaagactatc tgggagaacg gtacaatgtt agcttctttt
     1681 tatgtcttca acagatgatt ttaatcatct aagtgctgta gcttgccacg aaaatcttca
     1741 atggtctcgt agcctttttc agccatgata gcctgcaatt cagccgtaat gcgttcaaag
     1801 gctgccacac cttccttttg cagggttgtt ccaacttgga ccatgctggc tccacaaaga
     1861 atgtgttcga aagcatcacg tcctgtcaag accccaccag tcccaacaat ctgaatttca
     1921 ggtttcaagc gttggtaaaa agcgtggaca ttggcaagag cagtcggctt gatatactct
     1981 ccaccgatac caccaaaacc atttttaggc ttgatgacaa ctgactcatc cttgatatag
     2041 agaccatttc caatcgaatt gacacagttg acaaacttca aaggaaactg gttgaaaatc
     2101 gctgctgctt ggtcaaaatg aacaatgtca aagtaaggtg gcaatttgat acccagaggc
     2161 ttagtgaaat agctgaaaac ttctcttaaa atggtttctg tcgtttcaaa atcataggca
     2221 atctgcggtt ttccagggac attgggacaa gaaagattta actctgtcaa ccccttaaaa
     2281 tcactggctt ctacagttct caaaatttca tgagtctcat caggcgacat tccaactaaa
     2341 gataaaacaa atgtgcgttc tggctccgtt tcctgcaatt ctagtagata atccaaatag
     2401 taagccaagc cctgatttgg caaacccatc gaattgatag aaccaagcgg aacattctga
     2461 taacgtggtt ctggattacc cgcgcggtag tccaaggttg ctgtttttgt cacaaaagta
     2521 cccgccttcg agttcttaac cgcatccaat tcttccttgg tcatgcacca aacccctgcc
     2581 gcattcatca aacaattatc aaaggtaaat ccaccgagtg tcgttgctgt tgaaaccata
     2641 ttatcctcca tataggtcat tctttcttga ttatatcata agaaacaaac ggat
//
LOCUS       DASGAC010000210         2688 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.212, whole genome shotgun sequence.
ACCESSION   DASGAC010000210 DASGAC010000000
VERSION     DASGAC010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2688)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2688)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2688
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.212"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..575)
                     /locus_tag="U1335_002018"
     CDS             complement(<1..575)
                     /locus_tag="U1335_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000418959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DpnI domain-containing protein"
                     /protein_id="HEM5232463.1"
                     /translation="MDLRFNMDLVSKYSSNSQKARVLTENWVNQNSYCPNCRQKPLIH
                     FENNRPVADFFCVECSEEYELKSKKGNFSSIINDGAYESMIERVQADNNPNFFFLTYS
                     KEFAVTNFLVLPKQFITVDTIIKRKPLAPTAKRAGWVSCNIDLSQVPSYGRIFLVKNG
                     HVREPDLVSKEFSETLFIRKQSIATRGWLLE"
     gene            complement(674..2221)
                     /gene="purH"
                     /locus_tag="U1335_002019"
     CDS             complement(674..2221)
                     /gene="purH"
                     /locus_tag="U1335_002019"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006146083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEM5232464.1"
                     /translation="MTKRALISVSDKNGIVELAQELTKLGWEIISTGGTKVALDQAGV
                     ATIAIDDVTGFPEMMDGRVKTLHPKIHGGLLARRDLDSHLQAAKDHEIGLIDLVVVNL
                     YPFKETILRPDVTYDLAVENIDIGGPSMLRSAAKNHASVTVVVDPEDYPTVLGEIAEQ
                     GETSYATRQRLAAKVFRHTAAYDALIADYFTKQVGEDKPEKLTITYDLNQPMRYGENP
                     QQHADFYQNALPTAYSIAAAKQLNGKELSFNNIRDADAAIRIIRDFKDRPTVVALKHM
                     NPCGIGQAETIEQAWDSAYEADPVSIFGGIVVLNREVDAATAEKMHPIFLEIIIAPSY
                     SVEALAILTNKKKNLRILELSFDAQDASEVEKEFTGVVGGLLVQDQDVVVESPADWQV
                     VTERQPSEQEWAAMEFAWKSSKYVKSNGIIITNDKMTLGVGPGQTNRVASVRIAIEQA
                     KDHLEGAVLASDAFFPFADNVEEIAAAGIKAIIQPGGSVRDQESIDMANKYGLTMVFT
                     GVRHFRH"
     gene            complement(2224..>2688)
                     /locus_tag="U1335_002020"
     CDS             complement(2224..>2688)
                     /locus_tag="U1335_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232465.1"
                     /translation="DINYQDSVISEFKDRLKDVGSIYIASTKSSQIIALIPDNDEKFR
                     ESLRENPHQDVTITWNESENSTWIVSPTVDNEEYRLTFQLPPIIQEYIFNNSVNQYDS
                     AYDEKRRSFGLLSFIAYLDNKNPTLCTLKFNEEETNALVGQYNHQLRLESGE"
BASE COUNT          720 a          653 c          515 g          800 t
ORIGIN      
        1 atctctaaca accagcctct cgttgcaata ctttgctttc gaataaacaa tgtttctgaa
       61 aattccttgg aaacaagatc aggttctcta acatgtccat tttttaccaa aaaaatacga
      121 ccgtatgatg gaacctgtga taaatcaata ttgcagctca cccaacctgc tctcttggca
      181 gtaggggcaa gtggtttacg tttgataatt gtatccaccg taataaactg cttaggcaaa
      241 actaaaaaat tcgtaactgc aaactctttt gaataggtta gaaagaaaaa gttaggattg
      301 ttatctgcct gaacacgctc tatcatgctt tcataagcac catcattgat aatggaagaa
      361 aaattcccct ttttactttt aagttcatac tcttctgaac attcaacaca gaaaaaatca
      421 gcaactggtc tattattttc aaaatgaatc aatggctttt gcctacaatt cggacagtaa
      481 ctattctggt ttacccaatt ctccgtcaga actcttgctt tctgactatt gctagagtac
      541 tttgaaacca aatccatatt aaaccgtaaa tccaagattt cctccgtcta gaatactatc
      601 gattgtttta tcttaattat accaaaaacc accccaactt ctccagctgg ggtgctatac
      661 ttatccaaaa ttctcaatgt ctaaaatgtc taactcccgt aaagaccatg gtcaagccgt
      721 acttgttggc catgtcaatg gactcttggt cacggacaga gccacctggc tgaatgattg
      781 ccttgatacc tgccgctgcg atttcttcca cgttatcagc aaatgggaag aaggcgtccg
      841 acgccaaaac ggctccctct aaatgatctt tggcttgctc aatagcgatg cggacggacg
      901 ccacacggtt ggtttgtccc ggccccacgc ccaaggtcat cttgtcattg gtgatgataa
      961 tgccgttgga cttgacatac ttggaggact tccaagcgaa ctccatggct gcccactctt
     1021 gctcggacgg ttgacgctcg gtcaccacct gccagtccgc tgggctttcc accaccacgt
     1081 cctgatcctg caccaagagc ccgccgacaa cgcctgtgaa ctctttttcc acttcgctcg
     1141 catcctgtgc gtcaaaggac aattccaaaa tccgaagatt tttcttttta ttagtcaaaa
     1201 tagctagcgc ttctaccgag tagctcggtg cgatgatgat ttctaagaaa atcgggtgca
     1261 tcttttcagc cgtcgcagca tccacttccc tgttcagcac gacgatgcct ccgaaaatgg
     1321 atactgggtc agcctcataa gcagaatccc aagcctgctc aatagtctct gcctgtccga
     1381 taccgcaagg gttcatgtgt ttgagagcca caacagttgg tcgatccttg aaatcacgga
     1441 taatccggat agctgcatcc gcatcacgaa tgttgttgaa agacagctcc ttaccgttta
     1501 gctgtttagc agctgcaatc gagtaagctg tcggaagggc attttggtag aaatccgcat
     1561 gttgctgagg attttctccg taacgcatgg gctgattgag gtcgtaggta atggtgagtt
     1621 tttcaggctt atcttcgcct acttgcttgg taaagtaatc tgcaatcaag gcatcgtagg
     1681 ctgcagtatg acggaatacc tttgcagcca atcgctgacg tgttgcatag ctagtttccc
     1741 cctgctctgc tatttcccct aaaaccgtcg gataatcttc cgggtctacc acaaccgtta
     1801 cactggcgtg gtttttagct gctgaacgaa gcatagacgg tccgcctatg tcgatgttct
     1861 ccaccgccaa gtcataggtc acatctggac gcaaaatggt ctctttgaag ggatagaggt
     1921 tgaccactac caagtcaatc aagccaattt cgtggtcctt agctgcttgc aggtgactgt
     1981 ccaaatcccg acgagccaac aagcctccgt gaattttggg gtgcagggtc ttgacacggc
     2041 cgtccatcat ctcaggaaaa ccggtcacat catcaatggc aattgtcgct acacccgcct
     2101 gatccaaggc aacctttgtg cctcctgtcg agatgatttc ccagccaagc ttggtcaatt
     2161 cttgggcaag ttctacgatg ccattcttat ctgatacgct aatcagtgcg cgttttgtca
     2221 tgttcactct ccactctcca atcttaactg atgattatat tgtcctacca aagcattagt
     2281 ttcttcctca ttaaatttta gtgtacacaa agttggattc ttattatcca aataagcaat
     2341 aaaacttaat agtccaaaag accttctttt ttcatcataa gcactgtcat attgatttac
     2401 tgaattattg aaaatatact cttgtataat cggaggtaat tgaaaagtaa gtctatattc
     2461 ttcattatca acagtagggc tcactatcca agtactattc tctgattcat tccaagtaat
     2521 tgtaacatct tgatgtgggt tttcacgtaa tgattcacga aatttttcat cattatcagg
     2581 tatgagcgct ataatctgtg aactttttgt acttgctata tagatactcc caacatcctt
     2641 taaacgatct ttaaattcgc taataacaga gtcttgataa tttatatc
//
LOCUS       DASGAC010000211         2626 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.213, whole genome shotgun sequence.
ACCESSION   DASGAC010000211 DASGAC010000000
VERSION     DASGAC010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2626)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2626)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2626
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.213"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            146..2377
                     /gene="gshAB"
                     /locus_tag="U1335_002021"
     CDS             146..2377
                     /gene="gshAB"
                     /locus_tag="U1335_002021"
                     /EC_number="6.3.2.2"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate--cysteine ligase
                     GshA/glutathione synthetase GshB"
                     /protein_id="HEM5232466.1"
                     /translation="MLQKLSPNSPILQATFGIERESLRINSNHKVAQTPHPHKLGSRS
                     FHPYIQTDYSEPQLELITPIAQSTKEARRLLGAITDVAARSMDKQEYLWPLSMPPVIS
                     EEEIQIAQLDSDYEYQYRVGLGERYGKLVQSMSGIHYNFELGKDLTQQLFELSEETDF
                     IAFKNTLYLKLAQNFLNYRWLLTYLYGASSLAEKGFLTTEVGCVRSIRNSKYGYVNSD
                     DVHISFSSLQQYVADIEQAVQSGQLSAEKEFYSSVRLRGAKTSRDYLSKGISYLEFRS
                     FDLNPYDPLAISQETLDTVHLFILSLLWLDQLTDVDNTLAKADKLNNLIALSHPHTPL
                     PSDADATPILTAMKAIVLHFGLDDYYGQLIAHAEAALQDPRLTLSGKIAEQVEDGSLE
                     RFGQQQGKTFHDYAWTAPYALKGYENMELSTQMILFDAIQLGLNVEILDEEDQFLKLW
                     HGDHVEYIKNGNMTSKDNYVIPLAMANKVVTKKILDQAGFPVPAGAEFTNKTDALRYY
                     GQVASSAIVVKPKSTNFGLGISIFQEPASLADYEKALDIAFSEDSHVLVEEFVAGTEY
                     RFFILDGKCEAVLLRVAANVVGDGSSTIRELVDQKNQDPLRGRDHRSPLEIINLGDIE
                     LLMLEQQGYTPDTVLPEGVQAFLRGNSNISTGGDSIDMTDQMDESYKQLAADMATAMG
                     AWACGVDLIIPDRTKPASKNKPNCTCIELNFNPAMYLHTYTYAGPGQNITPKILRKLF
                     PEL"
BASE COUNT          734 a          669 c          546 g          677 t
ORIGIN      
        1 cttttaacag agaaatccga agtctttgtt tgctttcagt gatttttagt acatttttca
       61 ccagaaacgt agcagaaatt tgtatttacc ctccaatcta gataaaattg gaataagact
      121 ttgacagaaa tataaaggac ttagtatgtt acaaaaatta tcaccaaaca gccccattct
      181 tcaggctact tttggaattg agcgcgaatc acttcgcatc aattcaaacc acaaagttgc
      241 acaaactccc catcctcata aactgggttc acgcagtttt cacccctata tccagacaga
      301 ctacagcgag ccacagttag agttgattac accaatcgct cagtcgacta aggaagctcg
      361 tcgcctactg ggagccatta cagatgttgc cgcacgttct atggacaagc aagaatacct
      421 ctggccccta tccatgccac ctgtgatttc agaagaagaa atccaaattg ctcaactaga
      481 tagcgactat gagtaccaat atcgtgtcgg tttgggggaa cgctatggca agctcgtcca
      541 gtctatgtct ggcatccatt ataattttga attaggaaaa gacttaaccc aacaactttt
      601 tgaattaagc gaggaaacag attttatcgc attcaaaaat actctctacc tcaaattagc
      661 acaaaacttc ctcaactatc gttggctctt aacctaccta tatggagcaa gtagcctagc
      721 cgaaaaagga ttcctaacca cggaagtcgg ttgcgtccgt tccattcgta attccaagta
      781 cggctatgtc aactccgatg atgttcatat ttccttttct tctctccaac agtacgtggc
      841 cgacatcgaa caagctgtcc aatctggtca actatccgct gagaaggaat tttactcttc
      901 cgtccgacta cgtggagcaa agactagccg tgactacctc agcaagggga tttcttattt
      961 agaattccgt tccttcgacc ttaaccccta tgacccgctt gctattagtc aagaaaccct
     1021 tgatacagtc cacctcttta tcttatctct tctttggcta gaccaactga cagatgttga
     1081 taacacctta gcaaaagcag ataaacttaa caatctcatc gcccttagcc atccccacac
     1141 acctctacct agcgatgccg atgccacgcc aatcttgaca gccatgaaag ccatagttct
     1201 acactttgga ctggatgact actatggcca gctcattgca catgcggagg cagcacttca
     1261 agaccctcgt ttgacccttt ctggaaaaat agcagagcag gttgaagatg ggtctttgga
     1321 acgatttggc cagcaacaag gcaagacttt ccatgactat gcttggacag ccccatacgc
     1381 cctcaagggc tatgaaaaca tggaactctc cacccagatg attctctttg acgccattca
     1441 gctgggcttg aacgtggaga ttttggatga agaagaccaa tttctcaaac tatggcatgg
     1501 tgaccatgtc gagtacatca aaaatggcaa catgacctcc aaggacaact acgtcattcc
     1561 tctcgccatg gccaacaagg tggtgaccaa gaagattttg gaccaggctg gttttccagt
     1621 acctgcggga gctgaattta caaacaagac agatgccctg cggtattacg gacaggtagc
     1681 cagctctgct attgttgtca aaccaaaatc taccaacttc ggccttggca tctctatctt
     1741 ccaggagcca gccagccttg cggactatga aaaagccctg gacatcgcct tttcagaaga
     1801 tagccatgtg cttgtggagg aattcgtggc gggaaccgag taccgtttct tcatccttga
     1861 tggcaagtgc gaggctgtcc tgctccgcgt cgcagccaat gtcgtggggg acggtagctc
     1921 aaccatccgt gaattggtgg accaaaaaaa ccaagatcca ctgcgagggc gtgaccatcg
     1981 ttcgccactt gaaatcatca atctgggtga tatcgaactg ctcatgttgg agcaacaggg
     2041 ctacacacct gatacggtct tgccagaagg cgtccaagcc ttcctacgtg gcaattccaa
     2101 tatttcaacg ggtggtgact ccatcgatat gaccgaccaa atggacgagt cctacaagca
     2161 actggccgcc gatatggcaa ctgctatggg agcttgggcc tgtggggtgg acttgattat
     2221 ccccgaccgc accaagccag ccagcaagaa caagcccaac tgcacctgta tcgagcttaa
     2281 cttcaaccct gccatgtacc tgcacaccta cacctacgca ggacctggtc agaatattac
     2341 acctaaaatt ttgaggaagt tgtttccaga gctatagttt tccattttcc ttactttgtt
     2401 agtacttact tcaaaggttc gtggaacttt tgaaggctgg agatagggca aagcacgttc
     2461 gcctcaataa ctgcaggttg ctgggagtgg gaaagaactc gaccaagata aaaagagttc
     2521 gtcaacaagt ctttatttct agttgttgag ctgaaacagt ctattcccag acatcaattt
     2581 atgtgagctg actgccgtca gcttatatct cccactttaa aaggtc
//
LOCUS       DASGAC010000212         2577 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.214, whole genome shotgun sequence.
ACCESSION   DASGAC010000212 DASGAC010000000
VERSION     DASGAC010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2577)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2577)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.214"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            22..831
                     /locus_tag="U1335_002022"
     CDS             22..831
                     /locus_tag="U1335_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018381403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrsW family intramembrane metalloprotease"
                     /protein_id="HEM5232467.1"
                     /translation="MKEKFQMCKTYLPVVLATIGFVNGCKIIFGELGKPNGMEAKYPL
                     FLLTISLVAIYILPLLVLTYSLAKRYNISKQVIGLSWLLGLTSSISFSELGHTAIGYF
                     LLEIVKASNNFLNDWGAAISGPLAEEIGKGLTVLLVLLICRKMTLKNALVSGVIVGLG
                     FQIMEDITFVFRDMFMNKLDGFETILERVGQAGWAHWVFTLLFAIGLVALLTKNTGMS
                     KAQGVFWIGASFGIHFLFNSPFNTGIFQTVFPILSILLGLLAYQTVEKLSE"
     gene            complement(871..2541)
                     /locus_tag="U1335_002023"
     CDS             complement(871..2541)
                     /locus_tag="U1335_002023"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019803354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HEM5232468.1"
                     /translation="MKTDIEIAQSVTLKPITEIVEKVGISFDDIELYGKYKAKLSFDI
                     INAVKDNAPGKLILVTAINPTPAGEGKSTITIGLADALSKIGKKTMIALREPSLGPVM
                     GIKGGAAGGGYAQVLPMEDINLHFTGDMHAITTANNALSALIDNHIHQGNVIGIDQRR
                     IIWKRVVDLNDRALRKVTVGLGGPLNGIPREDGFDITVASEIMAILCLATDINDLKER
                     LANIVIGYRFDRSPVYVRDLAVEGALTLILKDAIKPNLVQTIYGTPAFVHGGPFANIA
                     HGCNSVLATTTALRLADYTVTEAGFGADLGAEKFLDIKVPNLPKAPDAVVIVATLRAL
                     KMHGGVAKTELSAENVEAVKAGFSNLKRHVENIQKYGIPAVVAINEFVSDTADEIAAL
                     KELCAEIGVSVELASVWANGADGGVELAETVVATIDNQEANYQRLYKAEDSLEEKVTK
                     IVTQIYGGSGVVFEKKARNQLTEFAKNGWDKLPVCMAKTQYSFSDDQFALGAPTDFDI
                     TVREFVPKLGAGFIVALTGDVMTMPGLPKAPAALNMDVAADGTAIGLF"
BASE COUNT          724 a          600 c          508 g          745 t
ORIGIN      
        1 ttaatacaga aaggtaaaac tatgaaagaa aaatttcaaa tgtgtaaaac ctatcttcca
       61 gtcgtcttag caacgattgg ttttgtcaac ggttgcaaaa ttatctttgg agaattaggt
      121 aagccaaatg gcatggaagc taaatatcct ctctttctct taaccatttc cttggtcgct
      181 atttacatcc tccctctact agtactgaca tattccttag ctaaacgcta taacatctcc
      241 aaacaagtta tagggcttag ctggctttta gggttaacaa gtagcatctc tttttctgaa
      301 ctgggacaca cagctatcgg atatttcctg ctcgaaatcg ttaaagctag taataatttc
      361 ctaaatgact ggggcgcagc tatttcaggt ccattggcag aagaaatcgg aaaagggcta
      421 actgttctac ttgtactgct catttgtaga aaaatgacac taaaaaatgc attggtaagc
      481 ggagtgattg ttggattagg tttccaaatc atggaagaca tcacctttgt ttttagagac
      541 atgttcatga ataaattaga cggctttgaa accattcttg aacgcgttgg tcaagctggt
      601 tgggcccatt gggttttcac gcttctcttt gccattggct tagtagccct tctcacgaaa
      661 aatacaggta tgtcaaaagc acagggagta ttttggattg gtgcaagctt tggaatccat
      721 tttctcttta attcaccgtt caacacgggc atcttccaga cggtatttcc tatcttaagt
      781 attttacttg gcttacttgc ctatcaaacg gttgagaaac tatctgaata gacaaaaaat
      841 ccgcctttga gcggattttt catattcttg ttagaacaag ccgatagctg tcccatctgc
      901 cgccacatcc atgttgagag ctgcgggtgc ttttggcaaa ccaggcatgg tcatgacatc
      961 acctgttaag gcaacgatga agcctgctcc taattttgga acaaattcac ggactgtaat
     1021 gtcaaagtct gtcggcgctc caagggcaaa ctgatcatct gagaaactgt actgggtctt
     1081 ggccatgcag actggcaact tgtcccaacc attcttagca aattcagtca gctggttacg
     1141 agctttcttc tcgaaaacca cacctgagcc accataaatc tgcgtaacaa tcttggtcac
     1201 tttctcttcc aagctatcct cagccttgta aagacgttgg tagtttgctt cttggttatc
     1261 aatagtagca acaactgtct cagccaattc aacaccacca tcagcaccat ttgcccaaac
     1321 acttgctaac tcaacagata caccaatttc agcgcaaagt tctttcaacg cggcaatttc
     1381 atcagctgta tctgagacga attcgttgat agcaacgact gctggaatac cgtatttctg
     1441 aatattttca acgtgacgct tcaagttaga aaaaccagct ttcactgcct ctacattttc
     1501 agcagaaagt tctgtcttgg ctacaccacc gtgcatttta agcgcacgca gagttgctac
     1561 aatcaccaca gcatcaggag ccttaggcaa gttcggcacc ttaatgtcaa ggaacttctc
     1621 tgctccaagg tcagctccga agcctgcttc tgtgaccgtg tagtcggcca atcgcagagc
     1681 tgttgtggta gcgagaactg agttacagcc atgggcgatg ttagcaaatg gaccaccgtg
     1741 gacaaaggct ggcgtgccat agatagtttg cacaaggttt ggtttaatag catccttcaa
     1801 aataagagtc aaagcacctt ccaccgccaa atcacgcaca tagacaggac tgcgatcgaa
     1861 acgataacca atcacaatat ttgccaaacg ttctttcaag tcattgatgt ctgtcgccaa
     1921 gcataaaatc gccatgattt cagaagctac ggtaatatcg aatccatctt cacgcggaat
     1981 accattgagc ggaccaccca atccaacagt tactttacgc aaagcacggt cgttgaggtc
     2041 cacaacacgt ttccagataa tacgacgttg atcaatgcca atcacattcc cctgatggat
     2101 atggttatca atcaaggctg aaagggcgtt atttgctgtg gtaatggcat gcatgtcgcc
     2161 tgtaaaatgc aaattgatgt cttccatagg caagacctga gcatagccac cacctgcagc
     2221 tccacctttg atccccatga caggtcccaa agaaggctca cggagggcaa tcatggtttt
     2281 cttgccaatt ttagacaagg catctgccaa accgatagta atagtcgact tgccttcacc
     2341 agctggcgtt gggttgatag ctgtcaccaa gatcaatttc cctggcgcat tgtctttcac
     2401 cgcattaatt atatcaaagg acaattttgc cttgtatttt ccatagagtt caatatcgtc
     2461 aaagctaata ccaacttttt caacgatttc tgtgattggt ttcaaggtta cactttgtgc
     2521 aatttcaata tctgttttca tgaaagctcc taatttcctt actttttatg gacatta
//
LOCUS       DASGAC010000213         2563 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.215, whole genome shotgun sequence.
ACCESSION   DASGAC010000213 DASGAC010000000
VERSION     DASGAC010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.215"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            32..1057
                     /gene="adhP"
                     /locus_tag="U1335_002024"
     CDS             32..1057
                     /gene="adhP"
                     /locus_tag="U1335_002024"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
                     /protein_id="HEM5232469.1"
                     /translation="MKAVVVNPESTGVVVVEKELRPLEAGEALVQIEYCGVCHTDLHV
                     ANGDFGKVPGRVLGHEGIGIVTEIAPDVTSLKVGDRVSVAWFFQGCGTCEYCTTGRET
                     LCRTVKNAGYSVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTCYKAIKEAHL
                     EPGQWIAIYGAGGLGNLAVQYAKKVFNAHVIAVDINNDKLELAKEVGADVIINGLEVE
                     DVPGYIKEVTGGGAHSTVVTAVSKVAFNQAIDSVRAGGYVVAVGLPSEYMDLSIVKTV
                     LDGIKVVGSLVGTRKDLEEAFHFGAMGLVVPVVQKRPVDDAKAVFDEMAAGTIQGRMV
                     LDFCHSH"
     gene            complement(1138..2421)
                     /locus_tag="U1335_002025"
     CDS             complement(1138..2421)
                     /locus_tag="U1335_002025"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEM5232470.1"
                     /translation="MKLQKPKGTQDLLPQDSAKWQYVENFTRSIFKQYNYAEIRTPIF
                     EHYEVISRSVGDTTDIVTKEMYDFYDKGERHITLRPEGTAPVVRSYVENKLFAPEVQK
                     PAKFYYMGPMFRYERPQAGRLRQFHQIGVECFGSNNPATDVETIAMAYHFFEELGIKD
                     IRLHLNSLGNPESRAAYRQALIDYLTPLKDQLSKDSQRRLEENPLRVLDSKEKEDKIA
                     VENAPSILDYLDEESTAHFEAVKSMLDSLGIAYTIDTNMVRGLDYYNHTIFEFMTEVG
                     GNDLTICAGGRYDGLVSYFGGPETAGFGFGMGIERLILILEKQGIELPLDTQLDVYIA
                     VLGQEANSGALELVQAIRKQGFRAERDYLDRKLKAQFKSADVFGAKAIITLGGSEIES
                     GQVVVKNNQTRSQVETSLEALKTDFASILEELEKQ"
BASE COUNT          649 a          596 c          594 g          724 t
ORIGIN      
        1 aaaatgtgct gcaataaata ggaggtctgc catgaaagca gttgttgtta atccagaatc
       61 tactggtgtt gtcgttgttg aaaaagaact tcgtccactc gaagctggcg aagctctggt
      121 ccaaattgag tactgtggtg tttgtcacac tgacctccac gttgccaatg gtgattttgg
      181 taaggttcct ggtcgcgttc ttggtcacga aggtatcggt atcgtgactg aaattgctcc
      241 tgatgtgacc agcttgaagg tcggcgaccg tgtcagcgtt gcttggttct tccaaggttg
      301 tggtacttgc gaatactgta ctactggccg tgaaaccctc tgccgcactg taaaaaatgc
      361 aggctactct gttgacggtg gtatggctga gcaatgtatt gtaacagcag actatgcagt
      421 aaaagttcca gaaggtcttg atccagctca agcaagttct atcacttgtg ctggcgttac
      481 ttgctacaaa gcgattaaag aagctcactt ggaaccaggt caatggatcg ctatctatgg
      541 tgctggcgga ctcggaaacc ttgctgtaca atacgctaag aaagtgttca atgcccacgt
      601 tatcgctgta gatatcaata atgacaaatt ggaattagcc aaggaagtcg gtgcagatgt
      661 tatcatcaat ggtcttgaag tagaagacgt gcctggctat atcaaggaag taactggcgg
      721 cggtgctcac tcaactgtcg taactgctgt ttctaaggtt gccttcaacc aggctattga
      781 cagcgttcgt gcaggcggtt atgtagttgc tgtaggactt ccatctgaat atatggatct
      841 cagcattgtc aaaacagtac tagacggtat caaggttgtc ggctctctag ttggtactcg
      901 taaagacttg gaagaagcct tccacttcgg tgctatggga ctagttgttc cagtcgttca
      961 aaaacgtcca gtggacgatg ccaaagcagt ctttgatgaa atggctgcag gtactatcca
     1021 aggtcgcatg gtcttagact tctgccactc acactaatgc gttctccact attttcaaga
     1081 agtgattatc caatcgcttc ttttttgctt tctaaaataa aaagaagcag ctttagacta
     1141 ctgcttctcc aattcttcta aaatacttgc aaaatctgtt ttgagtgctt ccaagcttgt
     1201 ttcaacttga cttcttgtct ggttattttt aaccacaacc tgtccagatt caatttcact
     1261 accacccagg gtaatgatgg ccttggctcc aaagacatct gctgacttga actgggcctt
     1321 gagcttgcgg tccagatagt cacgctctgc tcggaagcct tgcttgcgga tggcttgaac
     1381 cagctccaac gctccgctat tggcctcctg acctaaaacc gcgatgtaaa catctaactg
     1441 ggtgtcgaga gggagctcga tgccctgctt ttcaaggatt aggatgagac gttcaatccc
     1501 cataccaaag ccaaaaccag cggtttctgg cccaccgaaa taagacacca ggccgtcgta
     1561 gcgaccacca gcacagatgg tcaggtcatt gccacctacc tctgtcataa actcgaaaat
     1621 agtatggttg tagtagtcca aaccacgcac catgttggtg tcaatggtgt aagcaatacc
     1681 taggctgtcc aacatagact tgaccgcttc aaaatgagct gtactttctt catctagata
     1741 gtccaagata gacggtgcgt tttccacagc gatcttgtct tctttttcct tggaatccaa
     1801 cacacgcaag ggattttctt ccaagcgacg ctggctgtcc ttagatagct ggtccttgag
     1861 tggcgtcaga tagtcaatca aggcctggcg ataagcggca cgactctcgg gatttcccag
     1921 actgttgagg tggaggcgaa tgtccttgat tcccaactct tcaaagaagt gataggccat
     1981 agcaatggtt tctacgtctg tcgctgggtt attggaacca aaacactcca caccaatctg
     2041 gtggaactga cggagacgac ctgcctgcgg acgctcatag cggaacattg ggcccatgta
     2101 atagaactta gcaggttttt gtacttctgg ggcaaagagc ttgttctcta cataggagcg
     2161 aacaaccggt gccgtccctt ctggacggag ggtgatatga cgctctccct tgtcatagaa
     2221 atcgtacatc tccttggtca caatgtccgt cgtatcgcca accgaacggc tgatcacctc
     2281 gtaatgctcg aaaatcggtg tgcgaatctc agcgtaattg tactgtttga aaatgctgcg
     2341 ggtaaagttt tccacgtact gccatttggc agaatcctgc ggtagtaaat cctgtgttcc
     2401 tttaggtttt tgtagtttca taataaagtg tataaagcca acttatatca ctcgaagttg
     2461 tgcttattcc tttccaaatt aagtcataag ggctcaaact ctaccagtcg agccttgcaa
     2521 tcctccttat tttaccataa atgctctgct attttccaaa aaa
//
LOCUS       DASGAC010000214         2556 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.216, whole genome shotgun sequence.
ACCESSION   DASGAC010000214 DASGAC010000000
VERSION     DASGAC010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2556)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2556)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2556
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.216"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..765)
                     /gene="pheA"
                     /locus_tag="U1335_002026"
     CDS             complement(<1..765)
                     /gene="pheA"
                     /locus_tag="U1335_002026"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEM5232471.1"
                     /translation="MQVAYLGPRGSFTHQVAQQAFPTADLQAFETITEVIKAYETGEV
                     TYSVIPVENSIEGSVHETIDYLFHQAEIHAVAEIVQPIAQQLLATSADKAVEVIYSHP
                     QAIAQGKKYIQEHFPQARIEITASTAYAARFVAEHPEQPFAAIAPQAAAVEYGLEVIA
                     QDIQEISENFTRFWILGDKAPSIALEQVAKKVSLALTLPDNLPGALYKAMSVFSWRGI
                     SLTKIESRPLKTALGEYFFILDLDNQSEELLAYSQKE"
     gene            complement(756..1247)
                     /locus_tag="U1335_002027"
     CDS             complement(756..1247)
                     /locus_tag="U1335_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEM5232472.1"
                     /translation="MPIVLLGFMGVGKTTTAHLLNLPVYDMDHIIEERIGMPIADYFS
                     LEGEASFRHLETEVLKELLDLPSNCIVSTGGGVIKSEVNRELLLANRENNVLLTASFE
                     VSYQRISKDSQSQRPLFLQYSKEEFEALYRERMALYQGLADTVIDTDKLNPEQVARKI
                     LCK"
     gene            complement(1256..2536)
                     /gene="aroA"
                     /locus_tag="U1335_002028"
     CDS             complement(1256..2536)
                     /gene="aroA"
                     /locus_tag="U1335_002028"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEM5232473.1"
                     /translation="MKLRTNVEKLQGKIRVPGDKSISHRSIIFGSLAKGVTRVHDILR
                     GEDVLSTMQVFRDLGVKIEDNGDIVEVHGVGFDGLQAPKNDLDMGNSGTSIRLISGVL
                     AGQDFEATMFGDDSLSKRPMDRVTIPLSQMGVEISGQTERDLPPLTIKGNKHLKPIRY
                     QLPVASAQVKSALIFAALQAEGESVIVEKELTRNHTEDMIVQFGGQLEVNGKEIRIQG
                     GQEFIAQEITVPGDISSAAFWLVAGLIVPGSKIVLENVGINETRTGILDVIKAMGGKM
                     TLSNIDELAKSATITVETSELKATEIAGELIPRLIDELPIITLLATQAHGTTIIRDAE
                     ELKVKETDRIQVVADALNSMGATIEPTEDGMIIHGPTALHGAEINTFGDHRIGMMTAI
                     AALLAKDGEVVLERAEAINTSYPAFFEHLNSLMD"
BASE COUNT          726 a          598 c          474 g          758 t
ORIGIN      
        1 ttctttttga gaataggcta ataattcctc agactgattg tccagatcca gtatgaaaaa
       61 atactcaccc aaagccgttt tcaggggtcg gctttctatt tttgttaagc tgattcctct
      121 ccatgagaaa acagacatgg ccttatacaa ggctcctggc aggttatctg gcaatgtcag
      181 tgcaagactg acttttttag ctacttgttc cagggcaata gacggagcct tatcccccaa
      241 aatccaaaaa cgtgtaaaat tttcactgat ttcctggata tcttgcgcaa ttacttccag
      301 tccatattca actgctgccg cttgcggagc aattgccgcg aatggttgtt cagggtgttc
      361 tgccacaaag cgagcagcat aggctgtact agccgttatt tcaatacgag cctgaggaaa
      421 atgttcctga atatatttct tcccctgagc aattgcctgc ggatgagaat agataacctc
      481 tacagcctta tcggcactcg tggctaacag ttgttgggca atcggttgaa caatctctgc
      541 aaccgcatga atctccgcct gatgaaagag atagtcaatc gtttcatgaa cactaccttc
      601 aatcgagttc tctactggaa taacggaata ggtaacttcc cccgtttcgt aggccttgat
      661 aacctctgta atcgtttcaa aagcctgcaa atccgcagta ggaaaggcct gctgggccac
      721 ttgatgtgta aaagaaccac gaggtcctag ataggctact tgcataaaat tttccttgct
      781 acttgttctg gattcagttt atctgtatcg attaccgtat cagctaaacc ttgataaagt
      841 gccattcgtt cacgatagag ggcttcaaat tcttccttac tgtactgtaa aaagagaggt
      901 ctttgcgatt ggctatcctt actaattctc tgataggaaa cttcaaagga ggcagtaagt
      961 agtacattgt tctccctatt tgccaacagc aattccctgt ttacttcaga tttaatcaca
     1021 ccaccaccag ttgacacgat acaattacta ggtaagtcca gcaattcttt cagtacctct
     1081 gtctccagat gtctaaacga agcctctcct tcaagactga aatagtcagc aataggcata
     1141 ccaatccgtt cttcaatgat atggtccata tcgtaaacgg ggagatttaa caaatgtgct
     1201 gttgttgttt ttccaactcc cataaatcca agtaaaacga ttggcatacg ttctcctaat
     1261 ccatcaaact atttaagtgt tcaaagaagg caggatagct agtattgata gcttctgctc
     1321 tttccaatac aacttctcca tctttggcca acaaggcggc aatggcagtc atcataccga
     1381 tacggtggtc accaaatgta ttgatttcag caccatgtaa agcagttggt ccgtgaataa
     1441 tcataccatc ttctgttggt tcaatagttg ctcccatact atttagagca tctgcaacga
     1501 cctgaatacg atccgtttct ttgactttca actcctcagc atcacgaata atcgttgttc
     1561 catgtgcttg agtcgctagt aaggtaataa ttggcaactc atcaatcaaa cgaggaatca
     1621 attcgcctgc aatctccgta gccttcaatt ccgatgtttc aactgtaatg gtagcagatt
     1681 ttgcaagttc atctatatta gaaagggtca tttttccgcc catagcttta atgacatcta
     1741 gaataccagt ccgagtttca ttgattccca cattttcaag gacaattttt gaacctggta
     1801 cgattaagcc agcaaccaac caaaaagcag cacttgaaat atctcctgga actgtaatct
     1861 cttgggcaat aaactcctga ccaccttgga tgcggatttc cttgccattg acttctaact
     1921 gtccaccaaa ctggacaatc atatcttctg tatggtttcg agtcaattct ttttctacga
     1981 tgaccgactc tccctcagcc tgcaaggcag caaaaatcag agctgatttt acttgagcag
     2041 aggctacagg caattggtag cgaattggtt ttaaatgctt attccctttg atggtcaacg
     2101 gaggtaggtc acgttcagtt tgtccagaaa tctctactcc catttgactg agtggaatag
     2161 tcactcggtc catgggacgt ttggacaagg aatcatcacc aaacatagtc gcctcaaagt
     2221 cttgacctgc caaaacgcct gaaatcaaac gaatcgaggt tccagaattt cccatatcca
     2281 aatcattttt tggtgcttga agaccatcaa agccaacacc gtgtacttca acaatatcac
     2341 cattgtcttc aatttttaca cccaaatcac gaaagacctg catggttgac aagacatctt
     2401 ccccacgtaa aatatcgtgg acacgggtaa caccttttgc aagggaacca aaaataatag
     2461 aacgatgact gattgattta tcacctggga cacgaatttt tccttgtaat ttttctacat
     2521 ttgttcttaa tttcataact catacctcga aatagt
//
LOCUS       DASGAC010000215         2539 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.217, whole genome shotgun sequence.
ACCESSION   DASGAC010000215 DASGAC010000000
VERSION     DASGAC010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2539)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2539)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2539
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.217"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            14..1132
                     /gene="nagA"
                     /locus_tag="U1335_002029"
     CDS             14..1132
                     /gene="nagA"
                     /locus_tag="U1335_002029"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HEM5232474.1"
                     /translation="MILPESEVESAYLEITDKGQFGRIVTEKPEGEIVDYSDFHLAPG
                     LVDTHIHGYASHDVMDNDFEGIKVISEGLLSCGVTSWLPTTLTDSTENLDAVCETIGT
                     YAGQETGAKIQGIFLEGPFFTEKYKGAQNPKYMSDPSIEKLDKWHQHSKGLVNKIAIA
                     PEREGVKEFIEFANSKAIHTALAHSDATYAQAEAAVEAGANIFVHVYNGMSGLHHREP
                     GMVGAALNLKNVYAEMICDGHHVHPAAAEIVVKARGAEETVLITDCMRAGGMGEGESR
                     LGEFEVVVKDGTARLKESGSLAGSILELIEAVQNVVKWGLVSLPDALRMASLAPARSV
                     NIDHICGRIAEGRAADFIVVDDAGCLQATYLDGVKRFG"
     gene            1156..2157
                     /gene="lacD"
                     /locus_tag="U1335_002030"
     CDS             1156..2157
                     /gene="lacD"
                     /locus_tag="U1335_002030"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase"
                     /protein_id="HEM5232475.1"
                     /translation="MTKLQLSQAKFNHMTRLSNSDQVIAALAIDQRGALKRLLAAAAG
                     GGEFGDDILINFKKVISSDLTPYASSILLDAEYGVPASELRHADCGFIAAYEKTGYDA
                     STPGRLPDLLPNWSAKRIKELGADAVKILLYYDVDDKPEINDIKHAWVERIGSECIAE
                     DIPYFVEILTYDASDMDVTSREYAALKPHKVNGAMREFSKSRYNADVLKVEVPVNMNF
                     VEGYTDEEPVYTVEEAKAFFKEQTDSTHLPFIYLSAGVSAKLFQETLVFAKEAGSSFN
                     GVLCGRATWKDAVAIFASEGEEAAKAWLADQGRRNVEELNEVLATTARPWTEKVEVK"
BASE COUNT          729 a          492 c          618 g          700 t
ORIGIN      
        1 aaaagcaaaa tctattattt taccagagag tgaggtcgaa tcagcctatt tggaaattac
       61 tgacaagggt cagtttggac ggattgtgac tgaaaagcct gaaggggaga ttgttgatta
      121 ttctgacttt catttagcac cagggctagt tgatacacat atccacggct acgcttctca
      181 cgatgttatg gacaatgatt ttgaagggat taaggtaatt tcagaaggtc tcttatcctg
      241 tggggtaact tcttggttgc caacgacttt aacagattcc actgaaaatt tggatgccgt
      301 ctgtgaaacc attggaactt atgcagggca agaaacaggt gctaaaattc aaggtatttt
      361 cttagaaggt cccttcttta cagaaaaata caagggagcc caaaatccca agtatatgag
      421 cgatccatct attgagaaat tggacaaatg gcaccagcac tccaagggcc tggtcaataa
      481 aattgccatt gcgccagaac gtgaaggcgt caaagaattc atcgagtttg ctaacagcaa
      541 ggcaattcat actgccttgg ctcacagcga tgcgacctat gcgcaagcgg aagcggcagt
      601 agaagctggt gccaatatct tcgtccatgt ttacaatggg atgagtgggc ttcatcaccg
      661 tgaaccaggt atggtcggtg ctgctttgaa tttaaaaaat gtctatgcgg aaatgatttg
      721 tgatggacac catgttcatc cagctgcggc agaaatcgtg gtcaaagcac gtggagcaga
      781 ggaaactgtt ttgattacgg actgtatgcg agctggcggt atgggtgaag gggagtcccg
      841 cctcggtgaa tttgaagttg ttgtaaaaga tggaactgct cgtttaaaag aaagtggtag
      901 tttggcaggt tctatcttag aattgattga agcagtgcag aatgttgtga aatggggctt
      961 ggtatcccta cctgatgccc ttcgtatggc ttctctggca ccagctcgct ctgtcaatat
     1021 tgaccatatt tgtggtcgga ttgcagaagg tcgagctgca gactttatcg tcgtagatga
     1081 tgcaggatgt ttacaagcga cctatctaga tggcgtgaaa cgatttggtt aataaaattc
     1141 cttaggagga aactaatgac aaaattacaa ctttctcaag ctaaattcaa tcacatgacc
     1201 cgcttgtcaa atagcgatca ggtgattgcg gccttggcga ttgaccaacg tggtgcattg
     1261 aaacgcctgc ttgctgctgc agcaggtggt ggcgaatttg gagatgacat tttgattaac
     1321 ttcaagaaag tcatttcaag cgatttgaca ccctatgcaa gctccattct cttggatgcg
     1381 gaatacggtg ttccggcttc agaattgcgc catgcagatt gcggtttcat tgcagcttat
     1441 gaaaaaacag gttacgatgc gtccacacca ggtcgtttgc cagacctatt gccaaactgg
     1501 tcagccaaac gcatcaaaga attgggggcg gatgccgtaa aaatcttgct ttactatgat
     1561 gtagatgaca agccagaaat caacgacatt aagcatgctt gggtagaacg cattggtagt
     1621 gagtgtatcg cagaagatat tccttacttc gtcgaaatct tgacttacga tgccagcgat
     1681 atggatgtga cttctcgtga atacgcagcc ctcaaaccac acaaggtcaa tggtgccatg
     1741 cgtgaattta gtaagtcacg ttataatgcc gacgtgctca aggttgaagt gcctgtcaat
     1801 atgaactttg tagaaggcta cacagatgaa gagccagttt atacagttga ggaagctaag
     1861 gccttcttca aggaacaaac agacagcact cacttgccat tcatttattt gagcgctggc
     1921 gtatctgcca aactcttcca agaaaccctt gtctttgcca aagaagctgg ttcaagcttt
     1981 aatggtgtcc tgtgtggtcg ggcgacttgg aaggatgcag tagccatatt tgcaagcgag
     2041 ggtgaagaag cagccaaagc ttggttggca gatcaaggtc gccgcaacgt agaagaacta
     2101 aacgaggttc tagcaactac agcgcgtcct tggactgaaa aagttgaagt aaaataattg
     2161 ttttagtaag gtctgggctt aggttcagac ttttttgtta catcaaatat agacatttat
     2221 agtgaaatga aggacatatc taagtttatc aatttgaaaa ctttagagtt attttaggag
     2281 taggttattg acactataac tcaaagttgt ccttttccta attcaaacca ctagtagtag
     2341 acgctgagat attggcacga actctaagaa gtggagctgg gctttttgac tggcctcact
     2401 cacccaatca agataacaac gtctgctttt gattttcgaa gagtatcagt tatgcctgcg
     2461 actcgttgcc tagtactaaa agcaaactaa aatactacag gtttgagaat ttcgcatttt
     2521 cgcgtcggtt gtggtaaaa
//
LOCUS       DASGAC010000216         2443 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.218, whole genome shotgun sequence.
ACCESSION   DASGAC010000216 DASGAC010000000
VERSION     DASGAC010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2443
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.218"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            43..834
                     /gene="ucpA"
                     /locus_tag="U1335_002031"
     CDS             43..834
                     /gene="ucpA"
                     /locus_tag="U1335_002031"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018658921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase UcpA"
                     /protein_id="HEM5232476.1"
                     /translation="MKLLGKVALITGAAFGLGKGIAEVYVKNGAKICMIDQDEAVEKT
                     AQELREKYHADIITHIADVREIDELQKAVNKTVAAFGSLNIACCNAGVCRLAPFEEFT
                     EEMRDFHIDVNIKGVWNTCQVAIKEMLKGNGGSIVIASSVTGDIVADPGEAAYAMTKA
                     ATVGLTKCLAVEYAQKNIRVNCTQLGYARTPMVEQMALESNPENPEQIIEGIAKAVPM
                     KRLADPKEVGELFAFLGSDESSYITGAQIVIDGGATLPETVDMGV"
     gene            complement(1039..2355)
                     /locus_tag="U1335_002032"
     CDS             complement(1039..2355)
                     /locus_tag="U1335_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-containing oxidoreductase"
                     /protein_id="HEM5232477.1"
                     /translation="MEQYDLVVIGFGKAGKTLAGKLSAAGKKVALVEENPAMFGGTCI
                     NIGCIPTKTLLVAADKNWTFEQVMEQKETVTTRLRNKNEAVLKGSGANLYQGHARFVA
                     DKVVEVSAGEESIQLTAENIVINTGAKSRVLPIPGLLDTAHVYDSTGIQNLETRPDKL
                     AIIGGGNIGLEFAGLYSKLGSQVTVYEASSAILPREEEVVAKLAKEYMEEAGVTFVLG
                     AKIEQVAAAGEQVAVTVNGGTAIFDAVLYATGRVPNTADLGLENTAIELLENGAVKVD
                     DYCETTVPGVYAVGDVNGGPQFTYTSLDDFRIVFGKLTGTGTYSLSQRKSIPTSVFIT
                     PVLSRVGLTEKEAMEAGYDYIANELPVANMPRAHVNNDLKGIFKVIVDKESKLVLGAT
                     LFGRNSEELINLIAMAIDNKIPYTYFKTQIFTHPTMAENLNDVFNF"
BASE COUNT          734 a          534 c          515 g          660 t
ORIGIN      
        1 agggttacat ttaatttgat atattaacaa ggaggtgctc ttatgaaatt gcttggaaaa
       61 gttgccctga ttacaggtgc agcatttgga cttggaaaag gaattgcgga agtctatgta
      121 aaaaacgggg ctaaaatatg tatgatagat caggacgaag ctgtcgagaa aactgcacaa
      181 gaattgcgcg aaaagtatca tgcagatatc attacacata tagctgatgt tcgtgagata
      241 gatgaattgc aaaaggcagt aaataaaact gttgcggcat ttggttctct aaacatagct
      301 tgctgcaatg ccggagtctg tcgcttggcg ccatttgaag aatttacaga agaaatgagg
      361 gatttccata ttgatgtaaa tatcaagggt gtctggaata cttgccaagt cgctattaag
      421 gaaatgttaa aaggaaacgg aggcagtatt gtaattgctt cctctgtaac aggagatatt
      481 gtggcagatc ctggagaagc agcttatgcc atgacaaagg ctgcaacagt cggcttaact
      541 aaatgcttag cggttgaata tgctcaaaaa aatattcgtg taaactgtac acaattaggc
      601 tacgcacgta ctccaatggt agaacaaatg gctttagagt ctaatcctga aaaccccgag
      661 caaatcatcg agggaattgc aaaggcagtc ccaatgaaac gactagcaga tcctaaagaa
      721 gttggagaat tatttgcttt tcttggcagc gatgaaagta gttatataac aggagcccaa
      781 attgtcattg atggaggggc tactctgcca gagactgtcg atatgggagt ctaaggcaca
      841 atgtaattaa aaggagaata acaagatgaa ccatcatcaa ggtattctcc ttttatgcta
      901 taaaaaaccg ccctttcgga cggtcacggt tcatcaaaga aaaatggtct cttgatgaaa
      961 aatggtcact cgatgatctt gatactagtc taggaaacgc agccacaact aatacaagaa
     1021 gcttatctcc ctagagtatt aaaaattaaa gacatcattc aaattctcag ccattgtcgg
     1081 atgggtgaag atttgtgttt tgaagtaggt atatgggatt ttattatcaa tagccatagc
     1141 aatcaggtta atcaactcct cagaatttcg accaaagaga gtcgccccta gaacaagctt
     1201 actttcctta tccacgataa ccttgaagat acctttgagg tcattattga catgggcacg
     1261 tggcatattg gcgacaggca attcattggc aatgtagtcg taacctgctt ccatggcttc
     1321 cttctcggtc agaccaacac gggacagcac aggcgtgata aagacgctgg ttggaataga
     1381 cttacgttgg ctcaagctat aagttccagt cccagtcagt ttaccaaaaa cgatacggaa
     1441 gtcgtctagg gatgtgtaag taaattgtgg accaccattg acatcgccca ctgcgtagac
     1501 acctggaaca gtggtttcac agtagtcatc caccttaaca gcaccatttt ccaaaagctc
     1561 aatcgccgta ttttccaagc ccaagtcagc agtgttcggc acacgacctg tcgcatagag
     1621 gacagcatcg aagattgccg ttccgccatt gaccgtcaca gcaacttgct cgcccgcagc
     1681 tgctacttgc tcgattttcg cacccaagac gaaggtcaca ccagcttctt ccatatactc
     1741 cttggctaac ttagcaacca cttcctcctc tcttggtaaa atagcagagc tggcttcata
     1801 tactgtcacc tgactgccga gtttgctata aagaccagca aactccagcc caatgttgcc
     1861 tccgccgata attgccaact tgtcaggacg agtttccaag ttctgaatgc ctgtactatc
     1921 ataaacgtga gctgtatcca acaaacctgg aattggaagt acgcgcgact tagcacctgt
     1981 attgatgacg atgttttccg cagttagttg aatggattcc tcacctgccg acacttcaac
     2041 gactttgtcc gcaacaaaac gcgcgtgtcc ttgataaaga ttggcaccgc tgcctttcaa
     2101 gactgcctcg tttttgtttc gcagacgagt ggtgacggtt tctttttgct ccattacctg
     2161 ctcaaaagtc cagtttttat ctgctgctac caagagggtc ttggttggaa tacagccaat
     2221 attgatacaa gttccgccaa acatagcagg attttcctca accaaagcta cctttttacc
     2281 agctgctgaa agcttacctg ccaaggtctt accagccttt ccaaaaccaa tgactactaa
     2341 atcatattgt tccataaaat actccttata ttttttcaac attagtctat caaaaaagaa
     2401 aatttttggc acaattctgc tacagcctat tatggagtcc tag
//
LOCUS       DASGAC010000217         2439 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.219, whole genome shotgun sequence.
ACCESSION   DASGAC010000217 DASGAC010000000
VERSION     DASGAC010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2439
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.219"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            93..1241
                     /locus_tag="U1335_002033"
     CDS             93..1241
                     /locus_tag="U1335_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1972 domain-containing protein"
                     /protein_id="HEM5232478.1"
                     /translation="MKHVFIIGSRGLPARYGGFETFVQQLVSHQQSEKICYHVACLSD
                     TSHHQHSTYLGADCFAINPPKLGPARVIAYDMMAITYALKIIKEQQIERPIFYILGNT
                     IGGFIVPFAKKIHSVGGTLFVNPDGLEWKRAKWAKPVQRYLKFSEKMMVKYADLIIAD
                     NEGIEDYIQSEYSATNTRFIAYGTDLSPTKLIKESEQVRQYFTNWNIKEKEFYLIIGR
                     FVPENNYVIAIREFMASNTRRDLVIVANHEGSAYFQKLKDETGFISDKRIKFVGTVYD
                     QELLKYLRQECRAYIHGHEVGGTNPSLLEALAQTNENLVLGVDFNRKVALEGARYWSK
                     ESGSLSQLINQIDENTEAVELGEIAKKHMKDEYTWEKIVQEYEELFLQ"
     gene            1238..2167
                     /locus_tag="U1335_002034"
     CDS             1238..2167
                     /locus_tag="U1335_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5232479.1"
                     /translation="MKVNIVMSTYNGQQFLAEQIRSIQEQTYTDWTLFIRDDGSSDRT
                     REIIKDFVEQDQRIHFIDVETDENLGVIKSFHRLVHYDTADFYFFSDQDDVWLPNKLE
                     VSLKKAQAYPTNLPLMVYMDLKVVNQNLEVMAESMVKSQSHHANTELVQELTENTVTG
                     GVAMINHTLAEMWQVTEDILMHDWYLALLASAFGNLVFIDQPGELYRQHSDNVLGART
                     LSKRFKKWIRPHILFAVYWDLIKNSQKQARHLLQMPLSQSNRELIEAFVTIMDKPMLE
                     RFRILRKYGLRKNKAFHTLVFTTLIITKIAYKE"
     gene            2170..2307
                     /locus_tag="U1335_002035"
                     /pseudo
     CDS             2170..2307
                     /locus_tag="U1335_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019770493.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
BASE COUNT          807 a          405 c          495 g          732 t
ORIGIN      
        1 ttctgttttt tgtcagcaaa ctaggataga attaggaaaa aaaactaaaa aatggtataa
       61 tgaaaagaac tgcaatttga tggagaggat tcatgaaaca cgtttttatt atcggtagtc
      121 gtggactacc agcaagatat ggtggctttg agacctttgt ccaacaattg gtcagtcacc
      181 agcaatctga gaagatttgt tatcatgtgg cttgtttatc ggatacaagt catcaccaac
      241 attcgaccta cctgggtgca gattgcttcg ccattaatcc acccaaactt ggaccagctc
      301 gtgtgattgc ttatgatatg atggcgatca cttatgccct taaaatcatt aaggaacagc
      361 agatagagcg accaattttc tatatcttgg gaaataccat aggtggtttc atagtacctt
      421 ttgcgaaaaa gattcactct gttggaggta ccttgtttgt caatccagac ggtttggaat
      481 ggaaacgggc caagtgggct aagccagtcc aaaggtatct aaaattttct gaaaaaatga
      541 tggtcaaata tgctgatttg attattgctg ataatgaggg aattgaggat tatattcaat
      601 ctgaatactc ggctaccaat acacgcttta ttgcctatgg tacagattta agtccgacta
      661 agttaataaa agaatctgaa caagttcgcc aatattttac aaattggaac attaaagaga
      721 aagaatttta tctgattatc ggtcgttttg taccggagaa taactatgtg atagcaatta
      781 gggagtttat ggcaagtaac acgagacgtg acttagtcat cgttgcaaac catgaaggct
      841 ctgcctattt tcaaaaattg aaagatgaga caggcttcat atccgataag cggattaagt
      901 ttgtaggaac agtatatgac caagaactac ttaagtatct gcgccaagaa tgtcgagctt
      961 atattcatgg acatgaagtt ggaggaacca atcctagtct cctagaagcg ctggcgcaaa
     1021 ccaatgaaaa tttggtttta ggtgttgatt ttaaccgcaa agttgcccta gaaggtgctc
     1081 ggtattggag taaggagtca ggtagcctga gtcaattaat taaccaaatt gatgagaata
     1141 ctgaagcggt ggaattagga gaaattgcaa aaaaacacat gaaggatgaa tacacctggg
     1201 aaaaaatcgt ccaagagtac gaggaattat ttttacaatg aaagtaaaca tagtcatgtc
     1261 gacctacaat ggtcaacagt tcttagctga gcaaattcgt tctattcaag agcagactta
     1321 cacagactgg acactgttca ttcgtgatga tggttccagt gatcgaacta gagagattat
     1381 taaagatttt gttgaacaag atcagcgaat tcacttcata gatgttgaga cagacgaaaa
     1441 tcttggtgtt atcaaaagtt ttcataggct agttcattat gatactgctg atttctattt
     1501 tttcagtgac caagatgatg tttggctgcc aaataaactg gaagttagcc tgaaaaaagc
     1561 acaagcctat ccaacaaatt tgccattgat ggtttatatg gacctcaaag ttgtcaatca
     1621 aaatctagag gttatggcag aaagcatggt aaaatctcaa tctcatcatg caaatactga
     1681 attggtgcaa gagctgactg agaatactgt aactggcggt gtcgccatga ttaatcatac
     1741 tctcgctgaa atgtggcaag taactgagga tattttgatg catgattggt atctggccct
     1801 gcttgcgtca gcctttggaa atttggtatt tattgatcaa ccaggggaac tgtaccgcca
     1861 gcattctgat aatgttttag gggctcgaac actctcaaaa cgctttaaaa aatggattcg
     1921 ccctcatatt ttatttgctg tctattggga tttgataaaa aatagtcaaa aacaagcccg
     1981 acacttacta caaatgcctc tatctcagtc aaatagagaa ttaattgaag catttgtaac
     2041 cattatggat aaaccaatgc tggaacgatt caggatttta agaaaatatg gattgaggaa
     2101 aaataaggct tttcatacat tggtatttac aacactcatt attacaaaaa ttgcttataa
     2161 ggaatagtta tgaacttatt gaatagagaa aaccagattc ttttgaaaga aatggtaaaa
     2221 actgatttta agctgcgtta tcaaggttct ttgattggtc acctgtggtc aattctaaaa
     2281 ccattcatga tgtttacaat tatgtacccg ttgtgctagt taatcaagcg taagcaaggg
     2341 aatattttaa actgatacca acttcatact catttgattt caaaatctga acaaatacat
     2401 tttctatgta caatactttt tatagtttca ctatctaag
//
LOCUS       DASGAC010000218         2423 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.220, whole genome shotgun sequence.
ACCESSION   DASGAC010000218 DASGAC010000000
VERSION     DASGAC010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2423)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2423)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2423
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.220"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            167..784
                     /locus_tag="U1335_002036"
     CDS             167..784
                     /locus_tag="U1335_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5052 family protein"
                     /protein_id="HEM5232480.1"
                     /translation="MKWNKKLALGVVLATSLVTLSACQSISNWWKNTKEEWIGLEMTV
                     RTFDENSQLIDEMSGKSLSISRNEEFDSVDAEGYSNADSSVLKVILGNYEIDHVGSSL
                     IAAEEGLEDLFSKYQSTVDIANYDRSIPLVNRMVSSLKNDFTGKAKVVLIRSQNGTPL
                     ATYVGDKVSLYASDAPKTSELLIDGKRLIIYRCDYTIYDRELLEN"
     gene            785..1294
                     /locus_tag="U1335_002037"
     CDS             785..1294
                     /locus_tag="U1335_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEM5232481.1"
                     /translation="MIDIRSARIEDAADLVAIYAPYVEKTAITFETEVPTVEAFASRI
                     EKTLEKFPYLVAVEEGQILGYAYASTYYARAAYDWTVELSVYVSREVRGKGIGSLLYA
                     ALEEELTVRGFKNFLACIALPNPASLALHEKRGYKQVAHFKKVGYKFGTWHDIVWLQK
                     SLVGKQNED"
     gene            1284..1937
                     /locus_tag="U1335_002038"
     CDS             1284..1937
                     /locus_tag="U1335_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009754918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HEM5232482.1"
                     /translation="MKIDELEKRLLLVADASQAQPMKAYMKNNFDFLGVRTPDRRTVA
                     KQFFKDFKDQGIDWDFVEACWAKPYRELQYIAIDYLVTKKKDLALADLPRLKKLAQTK
                     SWWDSIDGLDKLVGKIVLDNPEAKQTILEWSLDDDFWLRRIAIDHQLLQKEKTDTELL
                     EKILVNNLNQTEFFINKAIGWSLRDYSKTNPEWVRTFLDKYSSQMAGLSIREASKYI"
     gene            1946..2230
                     /locus_tag="U1335_002039"
                     /pseudo
     CDS             1946..2230
                     /locus_tag="U1335_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646933.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1905 domain-containing protein"
BASE COUNT          737 a          428 c          542 g          716 t
ORIGIN      
        1 tgaaatgaac ttattgatat ttattttatg tttcctcttt cttttacaaa atagctttca
       61 taaagtatgc cagactattt tctgggataa aattgttatc tgcaagtaat tttggtattt
      121 actgtataac atgttacaat aaggtatcaa ccactggagg ttttatatga aatggaataa
      181 aaaactagca cttggtgttg tattagcaac cagtctagtc accttgtcag cctgtcaatc
      241 aatttcaaat tggtggaaaa ataccaagga agaatggatt ggcttggaaa tgacagttcg
      301 gacatttgat gagaattctc agttaataga tgaaatgtct ggtaagtccc tatcgatttc
      361 gcggaatgag gagtttgact ccgtggatgc cgaaggctat tctaatgcgg attcgtctgt
      421 tttgaaggtg atactaggta attatgaaat tgaccatgtt ggctcttcct tgattgctgc
      481 cgaagagggc ttggaggatt tattttccaa gtatcaatcg actgtagata ttgccaacta
      541 tgatcgttct attcccttgg ttaatcggat ggtttcgagc ttgaaaaatg attttactgg
      601 taaggctaag gttgttttaa ttcgttcgca aaatggcaca ccattagcga cctatgttgg
      661 tgataaggta tccctttatg cttctgatgc tccaaaaaca tcagaactac tgatagatgg
      721 taaacgcttg attatctacc gttgtgacta tactatttat gacagagaat tattggagaa
      781 ctaaatgata gacattcgtt ccgcaaggat agaggatgct gcagaccttg tggcaattta
      841 tgctccttat gtagaaaaga ccgctattac ctttgaaaca gaagtaccga ctgtggaagc
      901 ctttgccagt cggatcgaaa agaccttgga gaagtttccc tatctggtag cagtagaaga
      961 aggacaaatt ctaggctatg cttatgcctc aacctattat gcccgtgctg cttacgattg
     1021 gacggttgaa ttgtccgttt atgttagtag agaggtgcgt ggtaaaggga ttggaagtct
     1081 tttgtatgct gccttggaag aggaattgac ggtgcgtgga tttaaaaact ttttagcctg
     1141 tatcgccctg cccaatccag cctcgcttgc tctccatgag aagaggggct ataaacaggt
     1201 agctcatttc aagaaagttg gctacaaatt tggtacctgg catgatattg tctggctcca
     1261 aaagtctctt gtaggtaagc aaaatgaaga ttgacgaatt agaaaaacga ttattactag
     1321 tagcagatgc tagtcaagcc caaccgatga aagcctacat gaaaaacaac tttgactttt
     1381 tgggtgttcg gacacctgac cgtcgaacag ttgccaagca atttttcaaa gattttaagg
     1441 atcagggaat tgattgggac tttgtagagg cttgttgggc caaaccctac cgcgagcttc
     1501 agtatatcgc tattgattac ctggttacca agaaaaaaga cttggcttta gccgacctgc
     1561 cccgcttaaa aaagctagcc caaacaaagt catggtggga tagtattgat ggattagata
     1621 aactagtcgg taagattgtt ttggacaatc cagaggccaa gcagaccatt ttggaatgga
     1681 gccttgatga tgatttctgg ctgagacgaa ttgccattga ccaccaactc ttgcaaaaag
     1741 aaaagacaga tacagaactt cttgagaaga ttttggtcaa caatctcaat cagactgaat
     1801 tttttatcaa taaggcaatt ggctggagtt tgcgagatta ttctaagacc aatcctgaat
     1861 gggtacggac ttttcttgac aaatacagct cacaaatggc aggcttgtcc attcgtgaag
     1921 ccagtaaata tatctaggag gatccatgtc aaaaatctat gagtttgaag cagtcattca
     1981 tccagtacca gataagggcg gagcctacgt tatttttccc tatgatatac gagaggaatt
     2041 tggaaaaggc agagtaaagg tacatgcgac ttttgatgaa catccttatg atggttcaat
     2101 cgtcaatatg ggaatcaagg atgaagcagg caatgtttgc tatatcatcg gtattcagaa
     2161 ggctattcga gctaccatag gtaaagaggc tggtgataga gttcaggtga ctattcaaga
     2221 acgcttggat cacgccaaac gcatgaagaa atttcgtttt cagaaagcga aaatcataac
     2281 caaacatcaa tcaaaggagt acactagaga tagaggtgaa ctacaatgat tgattttctt
     2341 ttatccatag aagagcacaa agaagagtac gatagccgtc aagcatggaa aatccgctat
     2401 cctttatcta ctattctgtt tct
//
LOCUS       DASGAC010000219         2372 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.221, whole genome shotgun sequence.
ACCESSION   DASGAC010000219 DASGAC010000000
VERSION     DASGAC010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.221"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(321..608)
                     /locus_tag="U1335_002040"
     CDS             complement(321..608)
                     /locus_tag="U1335_002040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232483.1"
                     /translation="MALKDMNSKEKVIFGIEMGIAVIGGYKTVLQPLKVDTSISSNLK
                     CQTQVEKTRGQVVDKIDNLLGQLSDNTEASRSSRKQFVVHKKKEYSDKRFI"
     gene            complement(611..2098)
                     /locus_tag="U1335_002041"
     CDS             complement(611..2098)
                     /locus_tag="U1335_002041"
                     /inference="COORDINATES: protein motif:HMM:NF021897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HEM5232484.1"
                     /translation="MGFGWGLLWGTAKLSSSLAHKLNDNIYDLRSKTSFGAKKSGYAL
                     YGDKLGYDSEGVRDYRALRLPKYLSSSDQQVLAQGEYRLGKLKNPRTQETIPFSIFGE
                     HIFTHQLLVAPSGSGKTYGVIVPAILSLLENHFKVVVNDVKGDMLQLVVDAKKRFGIN
                     QKFTVRTWNPFDSQSSHHWNPLDEIRDERDSLLIQAIADSLLGTDDNQGMENKHFVER
                     DKRWLQGLIMLVKKNIRPKNQNLNYIYNLLTVDQGTLSDLIMAEEDLAIKGRLRDMLD
                     IESTLYLSGLASKLSIFGERDTEIVTRDSHFTLEEVLNTEGLLVLHSPISRGEVAWKM
                     SALFYGMMKVKICSTGKLPVWMSWMMDEAAFIAPRIELAASLAQLRSFGVGITIAIQS
                     ISQFGDKISFAKYASNCSSKILLQHTDRVSAAFLSKEIGSKTVKQISKSVGTRSVSNI
                     SQQVSEVPILSETEIMHFPSDFGRHAGIFFNPKILQEPMLIDFER"
BASE COUNT          682 a          549 c          332 g          809 t
ORIGIN      
        1 tgttccttgt gtattaatta atccgttatt catttgaaac tacctcctaa cattaacgct
       61 cttttatacg ataagtttgt tttgcgctac ttactgctgc tctaccaaac gccatacttc
      121 tacttctagt attactattg ttctgattaa gcgacctaga acttatagct acttgtccta
      181 acttcctttt cgtttgtatc ctagctatgc taccctctct tttctgaact tggtgactac
      241 tcagttttgg actctgctct actagccatc ccgtagatcg tccgtactgt tcaaccttat
      301 tattcctcaa cttttccata ttatataaac cttttatcag aatactcttt ctttttgtgt
      361 acaacaaatt gcttcctgct cgaacgacta gcttctgtgt tatccgacag ttgtcctagt
      421 aagttatcaa ttttatcaac cacttgacct cgagtttttt ctacttgagt ttggcactta
      481 agatttgaag aaatgctagt atctacttta agaggttgca atacagtttt gtatccccct
      541 atcacagcaa tccccatttc aattccaaat ataacctttt ctttcgaatt catatctttt
      601 agagccatag ctacctctca aaatctatca acattggttc ttggagtatc tttggattga
      661 aaaaaatccc tgcatggcga ccaaaatcag aaggaaagtg cataatttct gtctctgata
      721 gtatcggtac ttctgaaact tgttgactaa tattacttac agaacgcgtc cctacacttt
      781 tagaaatttg ctttacggtc ttacttccta tctcttttga aagaaacgct gccgatactc
      841 tgtctgtatg ttgaagaagt attttcgaag aacaatttga tgcatatttt gcaaaagata
      901 tcttatctcc aaattgagaa atactttgaa tggcaatggt aattcctaca ccaaatgaac
      961 gaagttgtgc taaggatgca gctaactcta tccttggagc aataaaggca gcctcatcca
     1021 tcatccaact catccataca ggtaactttc cagtagagca gattttaact ttcatcatcc
     1081 cataaaataa ggcactcatt ttccaggcaa cttctccacg actaattggt gaatgtagca
     1141 ccagcaaacc ctcggtattt aacacttctt ccaatgtaaa atgactatct ctagtaacaa
     1201 tctcagtatc cctttctcca aaaatagata actttgaggc gagaccactc aaataaagtg
     1261 tactctctat atcaagcata tcccgtaatc gtccttttat cgccaagtct tcctctgcca
     1321 ttattaaatc agataaagtt ccttgatcga ctgttagaag attatatata tagttcaggt
     1381 tctgattttt aggtcttata ttcttcttca ccaacatgat caacccctgc aaccatcgct
     1441 tatctcgctc aacaaaatgt ttattctcca tcccttgatt gtcgtcagtt cccaacaaag
     1501 agtctgctat cgcctgaatc aacaaactat ctctttcgtc tcttatctca tccagaggat
     1561 tccaatgatg agaactctgt gagtcgaaag ggttccaagt tctaactgta aatttttggt
     1621 taattccaaa acgtttcttt gcatccacaa ctaattggag catatccccc ttaacatcat
     1681 tcacaacaac tttaaaatga ttctccaaga gtgataaaat cgcaggaaca ataaccccat
     1741 aggtttttcc acttcccgat ggtgccacta ataactggtg agtaaaaata tgctctccga
     1801 aaattgagaa cggaattgtt tcttgcgttc gtggattttt taactttcca agtcggtatt
     1861 ccccttgagc taacacctgt tggtcactac tagaaagata tttgggtaag cgtaaggctc
     1921 tataatctcg caccccttca ctatcatatc ctagcttatc cccgtataag gcataccctg
     1981 atttctttgc accaaaagaa gtcttagacc gtaagtcata gatattgtca ttcaacttat
     2041 gagccaggga actacttaat tttgcggttc cccacaataa cccccatcca aaacccatac
     2101 ttacctccca aaaattgaaa ataacttgaa tttattcgca tcagaatgtt cttttttcaa
     2161 atccatgaaa tacttgtaaa atttatctga gacttgaatt ttctcttgct ttatttgttt
     2221 ctccatctcc tcgaaacttc tcttcagatt tttctgtttt acaaaagact caatctgctc
     2281 ctctgacaac atcctatttt tatattcaaa ctgtaagaac aaaagcaaaa gttcatcgtc
     2341 cccgttaatg atttgatttt gaatacaagc ca
//
LOCUS       DASGAC010000220         2369 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.222, whole genome shotgun sequence.
ACCESSION   DASGAC010000220 DASGAC010000000
VERSION     DASGAC010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2369
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.222"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            9..356
                     /gene="ssrA"
                     /locus_tag="U1335_002042"
     tmRNA           9..356
                     /gene="ssrA"
                     /locus_tag="U1335_002042"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            359..446
                     /locus_tag="U1335_002043"
     tRNA            359..446
                     /locus_tag="U1335_002043"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:393..395,aa:Ser,seq:gga)
     gene            complement(586..1972)
                     /locus_tag="U1335_002044"
                     /pseudo
     CDS             complement(586..1972)
                     /locus_tag="U1335_002044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000468698.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1182 family transposase"
BASE COUNT          648 a          481 c          505 g          735 t
ORIGIN      
        1 aatcctacgg ggttgttacg gattcgacag gcattatgag gcttgttctg caactcatcg
       61 gcagatgtaa aaatgccagt taaatataac tgcaaaaaat acaaacactt acgcattagc
      121 agcttaataa cctgcctgcg tgaccagtcg cgaattgctt gtgtttgctg attggtctta
      181 aaatagcaag ctacgttggg attgagtcag gcagttccaa aagagattta ctgactcgct
      241 tggtctaggt ttgagttatg tatcgagttc aagttaaagc aagacataac ctatggttgt
      301 agacgaataa gttagcaggt gtttggacgt gggttcgact cccaccagct ccatatatgg
      361 aagattactc aagaggctca agaggccgtg ttggaaacgc ggtaggcgtg taacagcgtg
      421 cgtgggttcg aatcccatgt cttccgtatg ttattgaaga acgactgata gtcgttccag
      481 attgaagaca aacatctcaa caggggtttg tctttttctg tttattggtc tgatagtccg
      541 tctttttgcc agcatagtag ttatttgtac aaaataaaaa ggcttccctg ccctcatttt
      601 tacccatttc tttagattta aacacgccaa agtcagtcca accttatctt ccattttgga
      661 cttgcctttc tctcttgtat aacgaagatt gtggtactct ttggctgtcc caaagaggcg
      721 ttcaatggtt tcttttcgtt tctggtagag ctccttcata cctttcctgt gccgaatctc
      781 ttcacaggtt tctaaaacct ctttccaaat gtgtcgagtt accactttct gcttgttctt
      841 gctttctgta caaattgaca gaagtggaca agtagcacag atagctggat cactcttata
      901 ttcccgatag ccttctctgg tggttgtgcg atagtttaag acctgattct caggacagat
      961 ataacagtca tagtattcat cataaacaaa gtccttagac cgcagtttcc ccttctttcc
     1021 tttcggtcgt gtataaggaa agacaggagt aatctcttgt tctaggagga agtaagcgat
     1081 acttggggtc ttatagccag aatcagcaat gagaaagcta ggctgaaagg gttggagttt
     1141 agcgaagagt gcaggaaagg cctgactgtc atggacattg ccagcctcca cactataagc
     1201 cagagcccaa ccatgcttgt cacaagcaac ctgagctgta taagcgaata cttccttcgc
     1261 tttcttattt ctaggctcag gctgaaaagg ttcatcgaac cttttcactg gtccccttta
     1321 tgaaaccaac cactttctgg gtcggttgta gaaattttct tagcgatagg ctccggctct
     1381 ttttcgggcc ctagcggctt ttttgcgtgc ttcactctgt ctctattgat ttcaatttct
     1441 agttgctcac tcataaactt ggcttgcttt tcgacttcac ggttggtgaa cttacgatta
     1501 ttcgctgcag ctttgatata ggtaccgtca atgaaaattt ctgttggatc tatgaatcct
     1561 gcattgacac agagacctaa gatatgggtg aaaatgcctt caatgacctg tctatcttgg
     1621 aaacgacgga catagttctt tccgtaggta gtgaaatggg gtaccttatc atccagtcga
     1681 agaccaataa accaacggta ggcagtgttg acttcaattt ccttaatggt ttgacgcatg
     1741 gagcgaatac cgaagagaca ctgcaggact ggaattttaa tgagtagaat agggtcaaga
     1801 ctagggcgcc ctgtatcatt gctatatagc tatctgcgac taagtcatag ataaaagaga
     1861 agtcaatagc gtcctctatt tgacgaagga gatgatcttg aggaacaagg tcatctaaac
     1921 tgtagaaacc aaattgaccg cgattgtagt ctgggttttc tttgtgtaac ataacgattc
     1981 tccctctgct tattagctag tattcctatc tctattatac tactttgcat atgaaaaagc
     2041 cgttagaaat acaattctaa cgactttgtc ttcagtctgg aacgactgat agtcgttctt
     2101 ttttatgtga cttttagtcc gtcacgctcc gtaaggtgcg tgacgaaggt tatgttatat
     2161 agttaaatga aacaaaaaca gtacatttgt gatataatgc atgactaatt gaaacaagaa
     2221 caggacaaaa acacctcaga aaagccttgc aaaattgcga tagtttcctt gagacacttt
     2281 tgtcctgctc ttgtttcatt tgactataga atcctatttt ccatgggata aaaatattaa
     2341 gagagcatgt aaatagaaaa aggttccag
//
LOCUS       DASGAC010000221         2359 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.223, whole genome shotgun sequence.
ACCESSION   DASGAC010000221 DASGAC010000000
VERSION     DASGAC010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.223"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(316..966)
                     /locus_tag="U1335_002045"
     CDS             complement(316..966)
                     /locus_tag="U1335_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002939615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5232485.1"
                     /translation="MYQTILFDLDGTLTDSGQGILNSVAYALEKMGIEEPDTANLNRF
                     IGPPLYESFSRFYQLSPEDTQSAVDAFRVYFKEKGMFENQLYPGIIPLLEELRTAGKT
                     LVIATSKPEIFAKQILEHFGIAHYFDVIAGASLDSSRISKADVIGYAINQLEAFPKHA
                     VMIGDREHDIEGARMHQLPAIGVLYGYGSKQEFEKAGATMIVETVQDLKRVLLTTE"
     gene            1074..2201
                     /locus_tag="U1335_002046"
     CDS             1074..2201
                     /locus_tag="U1335_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HEM5232486.1"
                     /translation="MHILIAPDSFKESLSATKVAEAIKKGFSKVYPQAGYDLIPLGDG
                     GEGTVESLMQALSLDGTQTWVTGPFGDKIKVSYAVKDDLAVFEMAEIVGLASIPHERR
                     SPLFIKTQGVGELIVELVQNGVKRIFIGVGGSASHDGGIGMAAGLGVKFYNREGKEVE
                     AIGAHIGEIVSFSTEDMLVDLSQVRIDLVTDVENPLCGPAGATFVFAGQKGLASAEFE
                     LVDKKMESFYKLVNPMLLDLAGAGAGGGMAAGLVQFAGARIQKGIDFVLDQLDFDHRV
                     AKADLVVVGEGRMDAQSLSGKTPIGVARRTPTGIPIIAICGSLKDDLPEFPFENICAA
                     FPIIASVESLEDTLQKAEKNLVRTAEQVARILQLGGQQRWN"
     gene            2192..>2359
                     /locus_tag="U1335_002047"
     CDS             2192..>2359
                     /locus_tag="U1335_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232487.1"
                     /translation="MELVKYVAIILFILICLAKLVSVMRLSEKERGTETNVIKANGAM
                     FFFNEKNERGRL"
BASE COUNT          663 a          444 c          572 g          680 t
ORIGIN      
        1 catcaattta tgtgagctga ctgccgtcag cttatatctc ccactttaaa aggtctccca
       61 gaccttttaa actcccgccc ccgcacagct caaaaggttc agtgaacctt ttgaggttgg
      121 aaatagagcg aactttgttc gcaacagtcg taattgtcag atttggagtg taaaacacga
      181 actgctgaga tttgattcgc aaatcttatc tccaaccttt aacagtccac tggactgtta
      241 aaccctatca accactgcgc tgagatgttg acacgaaccc tgagaagcga gattggtctt
      301 tttgcccagc ctcttctatt ctgttgtcag taaaaccctt ttcaaatctt ggacggtttc
      361 gactatcatg gtggccccag ccttttcaaa ttcctgtttg ctaccatagc cgtaaagaac
      421 accgatggcg ggaagttggt gcatgcgtgc tccttcaatg tcatgttccc tatctccaat
      481 catcacagca tgttttggaa atgcttctaa ttgatttata gcgtagccga tgacgtccgc
      541 cttactgatg cgactactat ccagactagc accggcaatg acatcaaagt agtgagcgat
      601 accaaaatgt tctagaatct gtttggcaaa tatttctggc tttgaggtag caattactag
      661 tgtttttcca gccgttctca attcttcaag cagagggatg attccaggat agagttgatt
      721 ttcaaacatt cctttttctt taaaatagac acggaaagca tcaactgcac tttgtgtatc
      781 ttcagggctg agttgataga atcgtgaaaa agattcatag agtggcgggc cgatgaatcg
      841 gtttaaattg gctgtatctg gttcttcgat tcccattttt tctagtgcgt aggcgacgga
      901 gtttaagatt ccttgtccag aatcagtaag agttccatct aagtcaaata atatagtttg
      961 atacatactt atctcctttc tttcagtata acacagacga tgaaaaacag aaaagattta
     1021 ttgaaagctg aataggagcg tgatatacta ataatataaa ggagggtagt accatgcata
     1081 ttctcattgc tccggattca tttaaagagt ctctttcagc tacaaaggtt gctgaagcga
     1141 ttaaaaaagg attttctaag gtttacccac aagcagggta tgacttaatt cccctaggag
     1201 acggtggcga agggacagtt gagagtctaa tgcaggcctt atccttggat ggaacgcaga
     1261 cttgggtgac aggtccattt ggagataaaa ttaaggtttc ctatgcggtt aaagatgatc
     1321 ttgcagtttt tgaaatggct gagattgtag ggctggcaag tatcccgcat gaaagaagga
     1381 gtcctctctt tattaagaca caaggggttg gggagctgat tgtggagctc gttcaaaatg
     1441 gtgttaaacg catatttata ggagtaggtg gctctgccag tcatgatggt ggtatcggaa
     1501 tggcggcagg tttaggagtg aaattttata atcgagaggg aaaagaagta gaggcaattg
     1561 gagctcatat cggggagatt gtcagctttt ccacagagga tatgttggta gatctatctc
     1621 aggtcaggat tgatttggta acggatgtgg agaatccgct ttgcggacca gcgggtgcca
     1681 catttgtttt tgcaggtcag aaaggtcttg cctctgctga atttgaacta gtagacaaga
     1741 aaatggagtc cttttataaa ttagttaatc caatgctact cgatttggca ggagcgggtg
     1801 ctggaggagg tatggcagca ggtctagtcc aatttgctgg tgctcgcatt caaaaaggca
     1861 tcgactttgt cttggatcag ttggactttg atcatcgcgt cgccaaagcg gatctggttg
     1921 tggtcggaga agggcggatg gatgcacaaa gcttatcagg gaagactccg ataggagtag
     1981 ctagacgtac gccgacgggg attcccatca ttgcaatttg tggtagcctc aaagacgatc
     2041 ttcccgagtt tccttttgaa aatatctgcg ccgcttttcc aataattgca agcgttgaaa
     2101 gtttggagga cacgcttcag aaagcagaaa aaaacctggt ccgcacggca gagcaggtgg
     2161 caagaattct tcagttagga ggtcaacaaa gatggaatta gtgaaatatg tggctattat
     2221 cttatttatt cttatttgtc ttgcaaagct agtatccgtt atgagacttt ccgaaaaaga
     2281 aaggggaacg gaaacgaatg taataaaggc aaatggagca atgttctttt tcaatgaaaa
     2341 aaatgaaaga ggcagattg
//
LOCUS       DASGAC010000222         2346 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.224, whole genome shotgun sequence.
ACCESSION   DASGAC010000222 DASGAC010000000
VERSION     DASGAC010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2346
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.224"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            33..>2346
                     /locus_tag="U1335_002048"
     CDS             33..>2346
                     /locus_tag="U1335_002048"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013630.1,HMM:TIGR01168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM5232488.1"
                     /translation="MDKKQSFSLRKLSVGLVSGVIGTMLCFGSVVVSAEEQVLSADQS
                     PSLVGNVTNPEEKNDMEEMGGRLINEHSVVEINTSNDYGSAEGKSEDAAVSEPVENLS
                     DSAILNTEQIDNVLNNETKQVVDNTDLQSESVNHTDAEIVGNSFSGFQFSQETRIDNE
                     QKRAISKVTNIWSANSISEVKEEIERQKKQGLESYVVQWGDTLSSISMASNHTVSNLA
                     AINNIKNIDLIYTGQLLKEVIPQVNQIENATIELEKEKALKKIKGKWKLNTEDVVGKE
                     ITRQEKLGFNDYVIQWGDTLSIISKVTGKPLNQIVSENRIVDPNLIYTGHILKGILSP
                     VLNLHQNIAINSNSQHAVQLSDLVVNELENKQVDENYHKKSEVSSSNIDIAKETTSPT
                     QEGNLENTGKPNIISEVQPGLIDSTNDKEFVKEISINTELVGSKPEEEKVEEEFKVEE
                     VIRQEEETIKNEEEPAKYIVVSGYAYNSENTLLEETEIKINSVASASIIAKTDVTGYF
                     YVHLKEGEVHTLEAEDFRVEVATKVGNEPEIHNILGKFETGRVWSEDNDEVRLKSNVI
                     FLDDAKFVTEFVDENSVTLSNIADVRVGDIVVVPPAKIYEEPRAIQVVSVDTTDRRTK
                     IQYVTPNLFDVINHLDIKNEEFDLANAYFVPADGVTVLKEDVTDETGMRTIELGVSAK
                     YSKSIGDKLDLTSNSEFSLKGKVDLKIGGKLKSEAITIPDLSKFELGKLDLPNFDLSK
                     SLELSIEGGVEVSTKTKLEKKVDKLTFGKLI"
BASE COUNT          882 a          301 c          499 g          664 t
ORIGIN      
        1 aaaatactat aaaaataatt aggagtacat ttatggataa gaaacaaagt ttttctttga
       61 gaaaattaag cgtagggttg gtttcagggg ttattggcac tatgctatgt tttggctcag
      121 tagttgtatc tgctgaagaa caggtcttgt cagctgacca atcgccttct cttgtaggaa
      181 atgtgacaaa tccggaagag aagaatgaca tggaggagat ggggggaagg cttattaatg
      241 agcattctgt tgttgaaatt aataccagta acgattatgg aagtgcagaa ggtaagagtg
      301 aagatgcagc tgtttcagaa ccagttgaaa atctgtcaga cagtgcaata ttgaacactg
      361 aacaaattga taacgtgttg aacaatgaaa caaaacaagt ggttgataac acagatttac
      421 aatcagaaag tgttaatcat actgatgctg aaattgttgg aaacagtttc agtggttttc
      481 aatttagtca agaaacacga atagacaacg aacaaaaacg agcaatctct aaagtaacaa
      541 atatttggag tgccaattca atttcagaag ttaaggaaga aattgaacgc cagaaaaaac
      601 agggattaga gtcttatgtt gtccagtggg gtgatacttt gtctagtatc tcaatggcta
      661 gcaaccatac agttagtaat cttgctgcta ttaataatat taaaaatatt gatttaattt
      721 acacaggtca gctattaaaa gaagttattc ctcaagttaa tcaaatagaa aatgcaacta
      781 tagagcttga aaaagagaag gctctaaaaa aaataaaagg aaagtggaaa ttgaacactg
      841 aagatgtagt tggtaaggag attacgcgcc aagaaaagct gggttttaat gattatgtta
      901 tccagtgggg tgatacccta tctattattt cgaaagtgac aggaaaacca ttaaatcaaa
      961 ttgtaagcga gaatagaatt gttgatccaa acttaattta tacaggtcat atactcaaag
     1021 ggattttgtc tcctgtatta aatttgcatc aaaatattgc tatcaattca aattcacaac
     1081 atgcagtgca actgagtgat ttggtagtta atgaattaga aaataaacaa gtggatgaaa
     1141 actatcataa aaagtcagaa gtatcatctt caaatataga catcgctaag gagactactt
     1201 cacccactca agagggaaat ttagagaata ctggaaaacc aaacataata tcagaggttc
     1261 aaccgggact tatagatagc acaaatgata aggaatttgt taaagaaata tctattaaca
     1321 cggagttagt tggttcaaaa cctgaagagg aaaaagttga ggaagaattt aaagtagaag
     1381 aggtaatcag gcaagaagag gaaacaataa aaaatgagga agagccagca aaatatatag
     1441 tagtttcagg gtatgcttac aatagtgaga atactttgtt agaggagacg gagataaaga
     1501 ttaactcggt agcttcagct tcaattattg ctaaaacaga tgtgacaggt tatttttatg
     1561 tacatttaaa agaaggtgag gttcatactt tagaagcaga agactttaga gtagaagtcg
     1621 caactaaagt tggaaatgaa ccagaaattc ataatatttt gggtaaattt gaaactggta
     1681 gagtttggtc tgaagacaat gatgaagtgc gtttaaaaag taatgttatt ttcttggacg
     1741 atgcaaaatt tgtgactgaa tttgtggatg aaaattcggt aacgctatca aatattgccg
     1801 atgttagagt tggggatatt gttgtcgtcc caccggctaa aatctatgaa gaaccgagag
     1861 ctatccaggt tgtttcagtt gacacaactg atagacgaac caagattcaa tatgtaacac
     1921 caaatctctt tgatgttatt aatcatttag acataaagaa tgaagaattt gatttagcta
     1981 atgcctattt tgttccagct gatggagtga cagtcttgaa agaagatgtt actgatgaaa
     2041 ctgggatgag aactatagaa ttgggagtgt ctgcaaagta ttcaaaaagt atcggggaca
     2101 aacttgattt aacttcaaat tccgaattta gtttgaaagg taaggtagac ttgaaaattg
     2161 gtggcaaact aaaatcagag gccataacaa taccggatct ttcaaagttt gaacttggaa
     2221 aattagattt acctaatttt gatctttcta aaagtttgga gctttctata gaaggaggcg
     2281 tggaagtttc aaccaagact aaattagaga aaaaggtaga taaattaaca tttggaaagt
     2341 taataa
//
LOCUS       DASGAC010000223         2316 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.225, whole genome shotgun sequence.
ACCESSION   DASGAC010000223 DASGAC010000000
VERSION     DASGAC010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2316
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.225"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            23..1573
                     /gene="guaA"
                     /locus_tag="U1335_002049"
     CDS             23..1573
                     /gene="guaA"
                     /locus_tag="U1335_002049"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009880616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEM5232489.1"
                     /translation="MTKQDVQKIIVLDYGSQYNQLISRRIREFGVFSELKNHKITAEE
                     VRAINPIGIVLSGGPNSVYAENAFDIDPEIFELGIPILGICYGMQLITHKLGGKVVPA
                     GEAGNREYGQSNLQLKAESALFANTPEEQLVLMSHGDAVTEIPEGFHLVGLSADCPYA
                     AIENTERRIYGIQFHPEVRHSVYGNDILKNFAFGICGAKGDWTMENFIETEIGKIRQT
                     VGDKKVLLGLSGGVDSSVVGVLLQRAIGDQLTCIFVDHGLLRKNEGDQVMEMLGGKFG
                     LNIIRVDAAKRFLDLLAGVSDPEKKRKIIGNEFVYVFDDEASKLTDVEFLAQGTLYTD
                     IIESGTDTAETIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALGTALGMPDEVVWRQ
                     PFPGPGLAIRVMGEITEEKLQTVRESDAILREEIAKAGLDRDVWQYFTVNTGVRSVGV
                     MGDGRTYDYTIAIRAITSVDGMTADFAKLPWDVLQKISVRIVNEVDHVNRIVYDITSK
                     PPATVEWE"
     gene            1664..>2316
                     /locus_tag="U1335_002050"
     CDS             1664..>2316
                     /locus_tag="U1335_002050"
                     /inference="COORDINATES: protein motif:HMM:NF021065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HindIII family type II restriction endonuclease"
                     /protein_id="HEM5232490.1"
                     /translation="MVYDLEKLVNDEFRKLEGTDLLTVDTEKVTEDFFNMLTEINDQD
                     FVSILITSGYIPDLYGADSKEETLFTKLCEALEVNWATRMGFEAKTVTQKSSYEDVVI
                     RINNKTIVSDTKSFRLGRSQQAPNVKDFVKPEDYSKWAERHSGEKLGGLVVYPQLHEW
                     TKKSDAHIYCSDKKNPILMLPFHYLAYFLSRKGTFNSNDLEKLWDYDKIFPEKASGRT
                     "
BASE COUNT          722 a          434 c          503 g          657 t
ORIGIN      
        1 tttcaaaacg aaagggaaaa acatgacaaa acaagatgtc caaaaaatta ttgtattgga
       61 ttatggtagc cagtacaacc aacttatttc acgtcgaatt cgtgaatttg gtgtcttttc
      121 agaattgaaa aaccataaaa ttacagctga ggaagtccgt gctatcaatc caattggtat
      181 cgttctttca ggtggtccaa actctgttta cgcagaaaat gctttcgata ttgacccaga
      241 aatctttgaa ttaggtattc caatcttggg tatttgctac ggtatgcagt tgattactca
      301 caaattgggt ggtaaggttg tacctgctgg tgaggctgga aatcgtgaat atggtcaatc
      361 aaacttgcaa ttgaaagctg aatcagcctt atttgcaaac acacctgaag agcaattggt
      421 tctgatgagc catggtgatg ccgtaacgga aatccctgaa ggtttccact tggttggtct
      481 ttctgctgac tgcccttacg ctgccattga aaacacggaa cgccgaatct acggtatcca
      541 attccaccca gaagttcgtc attccgtata tggaaacgat attttgaaaa actttgcgtt
      601 tggtatctgt ggagccaaag gcgactggac aatggaaaac ttcatcgaaa cagaaatcgg
      661 aaaaatccgc cagactgttg gggacaagaa agtcttgctc ggtttatcag gcggtgtgga
      721 ttcatctgtt gtcggtgtgc ttcttcaacg tgctatcggt gaccaattga cctgtatctt
      781 cgttgaccac ggtcttctac gtaagaatga aggcgatcag gttatggaaa tgttgggcgg
      841 taagttcggt ctcaatatta ttcgcgttga tgctgctaag cgtttcttag acctacttgc
      901 tggcgtatct gaccctgaga agaaacgtaa aatcatcggt aatgaatttg tttacgtatt
      961 tgacgatgaa gcgagtaagt tgactgatgt tgaattccta gcgcaaggaa cgctttatac
     1021 cgatattatc gagtcaggaa cggatactgc tgagacaatc aaatctcacc acaacgttgg
     1081 tgggctgcca gaagatatgc agttcaagtt gattgaaccg ctcaatactc tctttaagga
     1141 tgaagttcgt gccctcggta ctgctcttgg tatgccggat gaagttgtat ggcgccaacc
     1201 attcccagga ccaggccttg ccattcgtgt catgggtgaa atcactgagg aaaaacttca
     1261 aactgttcgc gaatctgacg ctatcttgcg tgaggaaatt gcaaaagcgg gtcttgaccg
     1321 cgatgtgtgg caatatttca cggttaatac tggcgttcgc tccgtaggtg tcatgggaga
     1381 tggtcgtacc tacgactaca ccatcgccat ccgtgctatc acttctgtcg atggaatgac
     1441 agctgacttt gccaaactac catgggatgt tcttcaaaaa atctctgtcc gtatcgtaaa
     1501 cgaagtcgac cacgtcaacc gcatcgtcta tgatataaca agtaaaccac cagcaacagt
     1561 tgagtgggaa taaaagatat tgcaataaaa aggctttgaa atcagtgttt cagagccttt
     1621 aatgaaataa tcgcaaacaa tttgcaaaca aaggagaaag tatatggttt atgaccttga
     1681 aaaactcgtg aatgacgaat ttagaaaact tgaaggaaca gatttactta ctgtcgatac
     1741 cgaaaaagtt accgaagatt ttttcaatat gcttactgaa attaatgacc aagattttgt
     1801 cagtatttta atcacttcgg gatacattcc tgatttatac ggagcagatt ccaaagaaga
     1861 aacccttttt acaaaattat gtgaagcact tgaagtaaac tgggctacac gaatgggttt
     1921 tgaggcaaaa actgtaacac aaaaatcgtc ttatgaagat gttgtaataa gaattaataa
     1981 caaaacaatt gtttcagata caaaatcatt tagattagga cggtcccaac aagcccctaa
     2041 tgtaaaagat tttgttaagc cagaagatta ttcaaaatgg gctgaaagac attctggaga
     2101 aaagttaggt gggttggtag tatatcccca gttacatgag tggactaaaa aaagtgatgc
     2161 tcatatatat tgttcagata aaaagaatcc gatactaatg cttccatttc actatttagc
     2221 atattttcta agtagaaaag gtacttttaa ttccaatgac ttagaaaaat tatgggacta
     2281 cgacaaaatt tttcctgaaa aagctagcgg acggac
//
LOCUS       DASGAC010000224         2314 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.226, whole genome shotgun sequence.
ACCESSION   DASGAC010000224 DASGAC010000000
VERSION     DASGAC010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2314)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2314)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2314
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.226"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            184..540
                     /locus_tag="U1335_002051"
                     /pseudo
     CDS             184..540
                     /locus_tag="U1335_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775255.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase-like protein"
     gene            645..929
                     /locus_tag="U1335_002052"
                     /pseudo
     CDS             645..929
                     /locus_tag="U1335_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775255.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
     gene            1080..>2314
                     /locus_tag="U1335_002053"
     CDS             1080..>2314
                     /locus_tag="U1335_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012677188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HEM5232491.1"
                     /translation="MEQLNLITNLLRIKEKNITISNEYDLGTHVELHGHLDYTAPKCP
                     SCKGQMAKYDFQKPSKIPYLETAGYPLLIRLRKRRFKCKECGKMAVAETPLVKKNHQI
                     SVAVNQKIAQLLIENQAMTHIAHRLSISTSSVSRKLNEFKFETDWNTLPEVMSWDEYA
                     FKKGKMSFIAQDFNSLNVITILDGRTQATIRNHFLRYPRKVRNQVKVITMDMFSPYYQ
                     LAKQLFPNAKIVLDRFHIVQHLSRAMNRFRIQIMNQFDRKSHEYRALKRYWKLIQQDS
                     RTLSDKRFYRPMFRMHLTNKEILEKLLSYSDELRQHYELYQFLLFHFQEKNSVHFFDL
                     IEQEIANVNPIFQTVFKTFLKDKDKVLNAMELPYSNAKLEATNNLIKVIKRNAFGFRN
                     FENFKKRILIALNIKKERT"
BASE COUNT          761 a          451 c          432 g          670 t
ORIGIN      
        1 atttccagac ttgtttttcg tagtacagtg tactaattta tccccgagtt agtatagtga
       61 gggattagta aaactctcta ggttttccaa gggagttttc tttgccttga tattgataaa
      121 atgatattct aaaaaggtag atcaacttaa gtattctcat gttgaaaaga gatggagagt
      181 gggatgatag agtggatatt ttttgatttg ggttcgacgc ttttagatga agagactgct
      241 tatggttatt atatagacaa gtgtgtgaag aagttagagt ctctggatat agaggtttca
      301 tcagattctt ataaaaagaa aatggtggag tatgctcatc agtcgctgga tcccattcgt
      361 gcgacctggc actattttgc accgaccgag ccacgtcctt tatggacaaa tgagggtgtg
      421 agcctgtatc ctgaaacaat agatgctcta gagaagttat cacaaaacta tcgattgggg
      481 attgttgcca atcagtctag tagtgttaga gaactgctta aagagtgggg aattgagtct
      541 taaagtcatt tgaattatct ttgatacatc gtcactttcg ccttgccata ctttagtata
      601 gcctgcgcct cagttccttg tctgaaagct aattcattcg actatatttt caactcatca
      661 tcctctctga agaggttggg ttatctaaac cagatacaac tattttcaca cttgccttgc
      721 aaaaagcaaa catccctgca gatagagttg tctatgtcgg ggataggtat gataatgata
      781 ttctacctgc taaatctttg ggaatgtgga ctgtacggat actgacaggt tttgggaagt
      841 atgcccgtga aaatgaaaaa ttgaagagcg attgggtaat tccttcattg caagagataa
      901 caaatatttt tgaacaaaca aaaaactaga ctgaacattc tcagcctagt ttttaggctc
      961 tataatttct gtagtgggta aatccaccat ggaaattatg gagccttttt gagtatagaa
     1021 aaaaagtccc atatgaccta taatgaaaag cgacgaaact cacattagaa agggttcata
     1081 tggaacaact aaatcttatc acaaatcttc tcagaattaa agagaaaaat atcactatct
     1141 ctaatgaata tgacctagga actcacgtag aactccacgg tcacttggat tatacagccc
     1201 ctaaatgtcc ctcctgcaag ggacaaatgg caaaatacga cttccaaaaa ccctccaaaa
     1261 ttccctacct agaaactgct ggttatccct tgcttatccg actcagaaag cgtcgtttca
     1321 agtgcaaaga atgtgggaaa atggctgtcg ctgaaactcc tcttgtcaag aagaaccacc
     1381 aaatttctgt cgccgttaac cagaaaatcg cccaattact catcgaaaat caagcaatga
     1441 cacatattgc acacaggcta tctatctcaa catcatcagt tagtcgaaag ctaaatgagt
     1501 tcaagtttga aacagattgg aataccttac ctgaggtgat gagctgggat gagtatgcct
     1561 tcaaaaaggg gaaaatgagc tttatcgctc aagatttcaa ttccctaaat gtcattacca
     1621 ttctggacgg aagaacacaa gcaaccatcc gaaatcactt tctacgctat cctagaaagg
     1681 ttagaaatca agtcaaagtc attaccatgg atatgtttag tccctattat caacttgcta
     1741 aacaactatt tccaaatgcc aagatagtac ttgaccgctt tcatatcgta caacacctca
     1801 gccgtgctat gaaccgtttc cgtattcaaa ttatgaatca attcgacaga aaatcgcacg
     1861 aataccgagc cttgaaacgt tactggaaat tgatacaaca agatagccgt acactcagcg
     1921 ataaacgatt ttatcgccct atgtttcgca tgcacttgac taacaaggaa attctagaaa
     1981 aactcctatc ctactcagat gaactccgac agcactatga actctatcaa tttctcttgt
     2041 tccatttcca agaaaaaaac tcagttcatt tctttgacct tattgaacag gaaatagcca
     2101 atgttaatcc tattttccag acggtattta agacatttct aaaggataaa gacaaggttt
     2161 taaacgccat ggaattgcct tattcaaacg ccaaactgga agctaccaac aatctcatca
     2221 aagtcattaa gagaaatgcc tttggtttca ggaactttga aaattttaaa aaacggattt
     2281 tgattgcttt gaacataaag aaagagagaa cgaa
//
LOCUS       DASGAC010000225         2305 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.227, whole genome shotgun sequence.
ACCESSION   DASGAC010000225 DASGAC010000000
VERSION     DASGAC010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2305)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2305)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2305
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.227"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..383)
                     /locus_tag="U1335_002054"
     CDS             complement(<1..383)
                     /locus_tag="U1335_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012677391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5232492.1"
                     /translation="MKNKHLTLSDRNDIQIGIEQLKTFSAIAVKLGKDPATISKEVRK
                     NRVIKENSSTSNCEACPLLKKAPYVCNACPKKRGNCGYQKQFYYAKRAQLDYEAKLSD
                     SRTGVALNKEEFYRMDEIVSAAIQKG"
     gene            383..1654
                     /locus_tag="U1335_002055"
     CDS             383..1654
                     /locus_tag="U1335_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002888528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HEM5232493.1"
                     /translation="MSVTNLSHSKFYLISLSQSNFQFLRQTRTYFGNLPFNYYVARRQ
                     GLPITLDYVRFIEEWARITYVVPPRMDLYIEKNMGIQHIFQNYASPDDILPYSIDEGF
                     IDLTSSLKYFVPDENISRKDKLDMIVARIQRDIYRKTGVYSTVGMSNSNPLLAKLALD
                     NEAKKKPTMRANWSYENVEEKVWNIPKLTDFWGIGERTEKRLNKLGIYSIKELANFDA
                     DLLKKEFGVVGVELFYHANGIDESDVHKPYKPKSHGLGNSQVLPRDYYRRVDIELVLR
                     EMAEQVAIRLRRAHKKCCTVSIYIGFSRLEGKRHLQAQMKVDPINNTRVLTDHVLSLF
                     RKRYELGAVRSVAVTYSNFVDESLQLISLFDDIEQIEKEERFQTAIDSIRDKFGFTYI
                     QKANSLLEASHSVERSKLIGGHSAGGLDGLR"
     gene            1651..2013
                     /locus_tag="U1335_002056"
     CDS             1651..2013
                     /locus_tag="U1335_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006154576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232494.1"
                     /translation="MIDRSYLPFQAARDYQDRGMMKWMGFFLSEHTTSLDDDRHKIDM
                     ISDLTDMEKLVLIGQLYASQHQGMFVMKGKNIKNTHCGRVTEISPKEITIKTADKYQL
                     LQVKDILSINMTEETDFE"
     gene            2006..2293
                     /locus_tag="U1335_002057"
     CDS             2006..2293
                     /locus_tag="U1335_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000087381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232495.1"
                     /translation="MNRKEIYEGKLQMDYFSDSYLKFEEDFYRYSALGEPLTTLTDDI
                     LRVMAMSQKNYFKLSKRHSKDGRDHYFYFTVEFSKSGVGVRKFVYNACRLS"
BASE COUNT          697 a          416 c          510 g          682 t
ORIGIN      
        1 cccttttgga tggcagcaga aacaatctca tccatgcgat agaattcttc cttgtttagt
       61 gcaacacctg ttcttgagtc tgagagctta gcttcataat caagctgagc tctttttgcg
      121 tagtagaact gtttctggta tccgcagttg cctctctttt tcggacaggc attacaaacg
      181 tagggagcct ttttgagtaa agggcaggcc tcacaattgg aggtactaga gttctctttt
      241 atcaccctat ttttccgaac ttcttttgag attgtggccg ggtcttttcc tagcttaaca
      301 gcgatagctg agaaggtctt gagctgttca attcctattt gaatatcatt gcgatcagag
      361 agagttaagt gtttgttttt cattgtcagt taccaacttg tcccatagta agttctacct
      421 tatttctttg tctcagtcta atttccagtt tttaagacag actagaactt actttgggaa
      481 tttaccgttc aactattacg tggcacgcag gcaaggtctg ccaattacac ttgattatgt
      541 ccgattcatc gaagaatggg caagaattac ctacgtggtt ccccctcgca tggacttgta
      601 tattgagaaa aacatgggaa tccagcacat tttccaaaac tacgctagcc cagatgacat
      661 cctcccttat tctattgatg agggatttat tgacctcaca tcgtcgctaa aatactttgt
      721 acctgatgag aatatcagtc gcaaggacaa attggacatg atagtagctc ggattcagcg
      781 tgatatttac cgaaagacag gtgtttattc aacggttggc atgtctaata gcaacccact
      841 tttggcaaag ctagcattgg ataatgaagc taagaagaaa ccgactatga gggctaattg
      901 gtcttatgag aacgtagagg agaaagtctg gaatattcca aaactgacag acttttgggg
      961 catcggggag cgtacagaaa agcgattgaa taaactaggt atttactcta tcaaagagct
     1021 tgccaacttt gatgctgact tgcttaaaaa ggaatttgga gtagtgggtg tagagctctt
     1081 ttatcacgcc aatggtattg atgaaagtga tgtccataag ccatacaaac ccaaatcaca
     1141 cggtcttgga aattctcagg tcttaccaag agattattat agacgggtgg atattgaact
     1201 tgtccttcgg gaaatggcgg agcaagtagc cattcggttg agacgagctc ataagaaatg
     1261 ctgtacggtg tcaatttata tcggattttc aaggcttgaa ggtaagcgac atcttcaagc
     1321 ccaaatgaaa gtagatccga taaataatac ccgagtactg actgaccatg ttcttagtct
     1381 tttcaggaag aggtatgaac taggtgcagt cagaagtgtt gcggtgactt actcaaactt
     1441 tgtggatgag tcattgcagc tcatttcact ttttgatgat attgaacaaa ttgagaaaga
     1501 agaaaggttc caaacagcga ttgattctat ccgagataaa tttggcttta cttatattca
     1561 gaaggctaat tcattattgg aagcctcaca tagtgttgag agaagcaaat tgattggagg
     1621 tcactcagct ggtggtttag atggactaag atgattgata gaagttatct cccttttcaa
     1681 gcagctagag attatcagga tagaggcatg atgaagtgga tgggcttttt cctatccgaa
     1741 cataccacgt cactagacga tgatagacat aagattgata tgatatctga tttgactgat
     1801 atggagaagt tagtcctgat tggtcaactc tacgcttcgc aacaccaagg aatgttcgtc
     1861 atgaaaggaa aaaatattaa gaacacccac tgtggaagag tgactgaaat tagcccaaaa
     1921 gaaattacaa taaaaacagc tgacaagtat cagctgcttc aagtaaagga tattttatcc
     1981 atcaatatga cggaggagac agattttgaa tagaaaagaa atttatgagg gcaagttaca
     2041 aatggactat ttctctgatt cttatctcaa gttcgaagag gatttctatc gctattcagc
     2101 actaggagag ccactgacaa ccctcactga tgatatcctc agagtaatgg cgatgagcca
     2161 aaagaattac tttaaactta gcaagcgaca tagtaaggat gggcgagacc actatttcta
     2221 ttttactgtt gagttcagta aatcaggagt gggagtgagg aagtttgtat ataacgcttg
     2281 caggctgagt tgaattttaa tatta
//
LOCUS       DASGAC010000226         2304 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.228, whole genome shotgun sequence.
ACCESSION   DASGAC010000226 DASGAC010000000
VERSION     DASGAC010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2304)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2304)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2304
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.228"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(709..1959)
                     /locus_tag="U1335_002058"
     CDS             complement(709..1959)
                     /locus_tag="U1335_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006738960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5232496.1"
                     /translation="MINKKRKDNKNRILKDGEYQRPNGSYEYRWRDKRRKMNSIYAKS
                     LVELREKEKQIIKDSLNGLNVTKKVSVDDLYQKWKLLKRGLKDNTFKNYQYLYEYFVS
                     GQLGNVIITNLKKSDVRSFYNYLAEERHVKVSTIDSIHTVLHQVLQVAVDDEYIFNNP
                     SDNALKELKQSRTSGKKGHRALTLKEQQLFENFLENTSRYKGWYPVFITMLWTGLRVG
                     EVTGLRWEDIDFESNTISVNHTLVYYDTRTNRGVTFTINTPKTKAGERTVPLLPRVKE
                     ALILEKKRQEELEIVCKSKIDGYTNFIFLNRFGNVFHQGTLNKALKRIIRDCNFAVLD
                     GKIQSEVTLPNFSNHSLRHTFTTRMVEAGTNMKAMPEILGHSDISTTMNIYAEATKEL
                     KEKEMEKFGEDLQNSLSNLEEIYQ"
     gene            complement(2024..2222)
                     /locus_tag="U1335_002059"
                     /pseudo
     CDS             complement(2024..2222)
                     /locus_tag="U1335_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006738512.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
BASE COUNT          640 a          422 c          437 g          805 t
ORIGIN      
        1 cagtcgtaat ggccagattt ggagtgcaaa acacggattg ctgagatttg cttcgcaaat
       61 cttatctcca acctttaaca gtccactgga ctgttaaacc caatcaacca ctgcgctgag
      121 atgttgacgc gaactctgag tagtggtcct gggctttttg cccagcctct ggaaataatg
      181 cttacaatta gggcttactt aacaactact tgatgttttt agaggtgccc tttaattgtt
      241 tagataattt tatgatgaaa aaataaaatc agtcccaaga atgatgagat agttgatagg
      301 atgagttata ctatagttaa tcctaaatat ttttcataat ctcctgaaaa tcctgaccat
      361 gtggttggga ttttttgcat gcaaaaacac tcttagaatt tccaagagtg ttttaagtaa
      421 cggtgttaaa cagtttgtaa tttttatttc atcgtcggga gtgaaaaggt ctgggagacc
      481 ttttcagcca atcgccaaga aacatgaaag cgattggaac attctagtga aaataatact
      541 agcaagctac tgtttcttac ttcattgtca ggaaaagaaa actggttcta cgttatttca
      601 cgcaagtctc taaagcccgt tataccaagg tttagaaact ttgctaggtt ttatattttt
      661 ccctaacttt gtacaaaatt ggtaaatcag tggtaaattt ttggtaagtt attggtaaat
      721 ttcttcaagg tttgataggc tattttgaag gtcttctccg aacttttcca tctctttttc
      781 tttgagttct tttgtagctt cggcgtagat attcatagtg gttgaaatat cagagtgtcc
      841 aagaatttct ggcatcgcct tcatattagt tccagcttct accatacggg tagtgaaggt
      901 atgacggaga gagtggttgc tgaaattcgg aagtgttacc tcactttgta ttttaccatc
      961 aaggacagca aaattgcaat cacgaataat tcgtttcagt gctttattga gtgttccttg
     1021 atggaagaca ttaccaaaac gattgagaaa gataaaattg gtatagccgt caatcttact
     1081 cttgcagacg atttcaagct cttcttgacg tttcttttct aaaatcagcg cctccttaac
     1141 tcttggtagt agtgggacag tacgctcccc tgcctttgtc tttggagtgt tgattgtaaa
     1201 agtgacacca cgattcgttc ttgtatcata ataaacaagt gtatggttga cactaatagt
     1261 attgctttca aaatcaatgt cttcccaacg taagcctgtt acttcaccga ctcgaagtcc
     1321 agtccataac atcgtaataa atactgggta ccaaccttta taacggctcg tattctctaa
     1381 aaaattttca aagagctgct gttccttgag tgtcaaagct ctgtgtcctt ttttcccaga
     1441 agtacgagac tgctttagct ccttcaaagc attgtctgag ggattgttga aaatatactc
     1501 atcatcgaca gcaacttgaa gaacttgatg gagtacggta tggatgctat caatggtact
     1561 taccttgacg tgtcgttctt cggctaagta attgtaaaag gagcgaacat cacttttctt
     1621 gaggtttgta atgatgacat ttcctaattg accagacacg aaatattcgt ataggtactg
     1681 atagtttttg aaggtattat ctttgagacc tcgtttcaag agtttccact tttggtataa
     1741 gtcatctaca gaaacttttt tggtaacgtt taatccgttg agagaatctt ttataatttg
     1801 cttttctttt tctcgtagct caactaatga cttggcatag atactattca tctttcttcg
     1861 cttatcacgc cagcggtatt cgtaactacc atttggacgt tgatattctc cgtctttgag
     1921 gatgcgattt ttattgtctt tccgtttttt gtttatcata gatttcctcc ataaaaaaag
     1981 agggtataag ctatttgatt agcctatgcc ctctgagtga ttattaaatt gaatattggt
     2041 tttctaggaa tttctcaaat tttgctcgtt tgattagtcg tttgctgcca caccagagga
     2101 cgaaatcgca atcatcttca ttgctgattt cacgaagttt attgactccg atactgaaat
     2161 atgaggcagc ttcctcaaca gttaggtttg attttttccc agaatggaat ttcttttttc
     2221 atgtgttttc ctccgttatt tttgataaaa cgaaaacaat cccatttctg agcttgcttc
     2281 caaggagatt atgaaaaaga aaag
//
LOCUS       DASGAC010000227         2292 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.229, whole genome shotgun sequence.
ACCESSION   DASGAC010000227 DASGAC010000000
VERSION     DASGAC010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2292
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.229"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            84..1397
                     /locus_tag="U1335_002060"
     CDS             84..1397
                     /locus_tag="U1335_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEM5232497.1"
                     /translation="MIEKVFRDPVHNYVHVDHELIYKLINTKEFQRLRRIKQLGTTSY
                     TFHGGEHSRFSHCLGAYEIARRITQKFEDKYPQIWDTNESLLTMVAALLHDVGHGAYS
                     HTFEHLFDTDHEEMTCAIITSPETEINALLKQVSPEFPDKVASVIKHTYPNKQVVQLI
                     SSQIDVDRMDYLLRDSYFTGANYGEFDLTRILRVIRPTENGIAFKESGMHAVEDYVLS
                     RYQMYMQVYFHPASRSMEVLLQNLLNRAKLLYTSEQEFFARTSPRLLPFFEHRIRLTD
                     YLSLDDGVMNTYFQSWIDGPDRILSDLAQRYINRKVLKSITFKAEEEEALDRLRSLVA
                     DVGFDPEYYTAIHHNFDLPYDIYRPNAEKKRTQIEIYRKDETLVELSSLSPIVHSLSG
                     TIHGDSRFYFPKEMLEETGIFAPQIADFNSHIHNDHFIIGESNEH"
     gene            1387..2196
                     /gene="yidA"
                     /locus_tag="U1335_002061"
     CDS             1387..2196
                     /gene="yidA"
                     /locus_tag="U1335_002061"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase"
                     /protein_id="HEM5232498.1"
                     /translation="MSIKLVAIDIDGTLLNSQHQITAEVHSAIQEAKKAGVKIVIATG
                     RPISGVQAILEELNLTEAGDYVITFNGGLVQDAATGEDIVKDILTYEDYLDIESAARK
                     LKLPMHASTKEGIYTANRNIGKYTIYESTLVSAPIFYRTPEEMADKEIIKTMMVDEPE
                     ILDAAIPLLPTSLTEKYNVAKSAPFYLEITPKTVNKGQAIIHLAEKLGLTMDQTMAIG
                     DQENDRPMLEVVGNPVVMENGNPELKKIAKYITKSNDESGVAHALREWVLK"
BASE COUNT          733 a          504 c          427 g          628 t
ORIGIN      
        1 aaagattcca tttggtacat agcaatatcc ttgtgtttta gaaaaatcag gaatttatct
       61 cccttttttg ttataatgaa actatgatag aaaaagtatt tcgcgatcca gttcataact
      121 atgtacatgt tgatcatgag ctgatttata aacttatcaa tacaaaagaa tttcagcgac
      181 tacgccgcat caaacaacta gggactactt cctatacctt ccatggtggc gagcatagcc
      241 gcttttcgca ctgccttggc gcctacgaaa tcgccagacg gattactcaa aaatttgaag
      301 acaagtatcc acaaatctgg gatacaaacg agtccctact gaccatggtt gctgcgttac
      361 tccatgatgt cggacacgga gcctattctc ataccttcga gcatctattt gatacagacc
      421 atgaggaaat gacctgtgct attattacta gtccagaaac ggaaatcaat gctctgttga
      481 aacaagtttc acctgagttt ccagacaagg ttgctagtgt tatcaaacac acctatccaa
      541 ataaacaggt cgttcaactc atttcgagcc agattgatgt tgaccggatg gattatctat
      601 tacgagattc ctacttcaca ggtgcgaact atggtgaatt tgacctaact agaatattac
      661 gtgtcattcg cccgacagaa aatggaattg ccttcaaaga atctggtatg catgcagtag
      721 aagactacgt tctcagccgc taccagatgt acatgcaagt ctattttcat ccagcaagcc
      781 gctctatgga agtcctattg cagaatttac tcaatcgtgc caaactacta tatactagtg
      841 aacaggagtt ttttgcacga acttcacctc ggctattacc tttttttgag catcgtatcc
      901 gtctaaccga ctacctcagt cttgatgatg gagttatgaa tacttacttt caatcatgga
      961 tagatggacc agatcgtatt ttatctgact tagcccagcg ctatatcaat agaaaagtgc
     1021 tcaaatccat cactttcaag gccgaagaag aggaagcttt ggaccgcctg cgtagcctgg
     1081 tcgcagacgt cggattcgac ccagaatact atactgctat tcaccacaac tttgatttgc
     1141 cgtatgatat ttaccgaccg aatgcagaaa agaaacgaac tcaaattgag atttatcgca
     1201 aagatgaaac cttggtagaa ctatcctccc tatcaccaat tgtccattcc ttatcaggca
     1261 caatccatgg cgatagccgc ttctatttcc caaaagaaat gttagaagaa acaggaattt
     1321 tcgcacctca aatagctgat tttaacagcc acatacataa cgatcatttt ataattggag
     1381 aatcaaatga gcattaaact tgtcgccatc gatattgatg gtacactact aaatagtcaa
     1441 caccaaatta cagctgaagt acactcggca atccaagaag caaaaaaagc aggcgttaaa
     1501 attgttattg ctactggtcg ccccatttcc ggtgttcaag caattttaga agaactcaat
     1561 cttacagaag caggtgacta cgtcatcact tttaacggtg gcttagtcca agatgcagca
     1621 actggtgagg atattgtcaa agatatcttg acttatgagg attatctcga catcgaatct
     1681 gctgcccgta aactcaagct cccaatgcat gccagcacca aggaaggtat ctatactgcc
     1741 aaccgtaaca tcggtaaata caccatttac gaatccacac tagtaagtgc acccattttc
     1801 tatcgcactc ctgaagaaat ggctgataag gaaatcatca aaacaatgat ggttgatgag
     1861 ccagaaattc ttgatgctgc tattccactt ctaccgacca gcttgactga gaagtacaac
     1921 gtagcaaaat cagcaccatt ttatttggaa atcaccccta aaactgttaa caagggacaa
     1981 gctatcattc atctagctga gaagcttgga ctaacaatgg atcaaaccat ggccatcggt
     2041 gaccaagaaa atgaccgtcc aatgttggaa gttgttggta atcctgttgt catggaaaac
     2101 ggaaatcctg aattgaagaa aatcgccaaa tacattacga agtcaaatga tgagagcggt
     2161 gtagcccacg ctctgagaga atgggtactg aaatagcctc ttaaaatata acaaaaagca
     2221 tcgaattcaa aatccgatgc tttttgttat aatcttttag tttactttta gtactaggta
     2281 acaagctgca ga
//
LOCUS       DASGAC010000228         2236 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.230, whole genome shotgun sequence.
ACCESSION   DASGAC010000228 DASGAC010000000
VERSION     DASGAC010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2236)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2236)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.230"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..1132
                     /locus_tag="U1335_002062"
     CDS             <1..1132
                     /locus_tag="U1335_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018166165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5232499.1"
                     /translation="KRGKNKTWDYRIFDKNKKVIASNSGFKTKREAEIEALSIEIKLM
                     QGAIIDKNITFYDLWEKWLELTVKPLGKADTTLNKHMLRGKFIKAQFEDKPAIQIKAS
                     EYQAFINKYAETNCRDNVSRMNAEIRNVIVFAKRDKLNIEDFTEGVILSGRPPKKRKE
                     DKYIHSFKDYQKLVSYLKENLDMTSSIIPHLLLIQLKTGLRAGEVAGLTWDCVLWDTF
                     EIKTYRRYDTVRQRWSKAKTEDSIRTIPIDADTLNVLEKLKQEQDVFIENGTITNDEN
                     MIFVDLHYNIVTNAGINKHLKQILKTLRIFPQNMTSTGLRHTYCSTMLAMGVDIWAVS
                     KLMGHKDITEITETYGHLIKEKAEIENNKVRSVLKSLIENDK"
     gene            complement(1198..1281)
                     /locus_tag="U1335_002063"
     tRNA            complement(1198..1281)
                     /locus_tag="U1335_002063"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1245..1247),aa:Leu,seq:caa)
     gene            complement(1293..1364)
                     /locus_tag="U1335_002064"
     tRNA            complement(1293..1364)
                     /locus_tag="U1335_002064"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1330..1332),aa:Gln,seq:ttg)
     gene            complement(1375..1447)
                     /locus_tag="U1335_002065"
     tRNA            complement(1375..1447)
                     /locus_tag="U1335_002065"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1412..1414),aa:His,seq:gtg)
     gene            complement(1455..1525)
                     /locus_tag="U1335_002066"
     tRNA            complement(1455..1525)
                     /locus_tag="U1335_002066"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1491..1493),aa:Trp,seq:cca)
     gene            complement(1533..1613)
                     /locus_tag="U1335_002067"
     tRNA            complement(1533..1613)
                     /locus_tag="U1335_002067"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1577..1579),aa:Tyr,seq:gta)
     gene            complement(1634..1706)
                     /locus_tag="U1335_002068"
     tRNA            complement(1634..1706)
                     /locus_tag="U1335_002068"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1671..1673),aa:Phe,seq:gaa)
     gene            complement(1722..1795)
                     /locus_tag="U1335_002069"
     tRNA            complement(1722..1795)
                     /locus_tag="U1335_002069"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1759..1761),aa:Met,seq:cat)
     gene            complement(1805..1894)
                     /locus_tag="U1335_002070"
     tRNA            complement(1805..1894)
                     /locus_tag="U1335_002070"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1856..1858),aa:Ser,seq:tga)
     gene            complement(1903..1974)
                     /locus_tag="U1335_002071"
     tRNA            complement(1903..1974)
                     /locus_tag="U1335_002071"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1939..1941),aa:Glu,seq:ttc)
     gene            complement(1981..2054)
                     /locus_tag="U1335_002072"
     tRNA            complement(1981..2054)
                     /locus_tag="U1335_002072"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2018..2020),aa:Ile,seq:gat)
     gene            complement(2085..2155)
                     /locus_tag="U1335_002073"
     tRNA            complement(2085..2155)
                     /locus_tag="U1335_002073"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2121..2123),aa:Gly,seq:tcc)
     gene            complement(2161..2233)
                     /locus_tag="U1335_002074"
     tRNA            complement(2161..2233)
                     /locus_tag="U1335_002074"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2198..2200),aa:Val,seq:tac)
BASE COUNT          758 a          474 c          460 g          544 t
ORIGIN      
        1 aaaaagaggt aaaaataaaa cttgggacta ccgtatcttt gataagaaca aaaaagtgat
       61 tgcatcaaat tcaggattca aaactaaacg tgaagccgaa attgaagccc ttagcatcga
      121 aataaaatta atgcaaggtg caatcataga taaaaacatt acattttatg acttatggga
      181 aaaatggcta gaactgactg taaaaccgct tggtaaagct gatacaacac taaacaagca
      241 tatgttacga ggaaaattca tcaaagcaca atttgaagat aaaccagcta ttcagataaa
      301 agctagtgaa tatcaagctt ttatcaataa atacgctgaa acaaattgtc gtgataacgt
      361 aagtagaatg aatgcggaaa tccgaaatgt cattgtcttt gctaaacgtg acaaactcaa
      421 tattgaagat tttacagaag gtgttatttt atctggtcgt cctcctaaaa aacggaaaga
      481 agataagtat attcatagtt ttaaggatta tcaaaaactg gttagttact taaaagaaaa
      541 tttagacatg actagttcca tcattcctca cttactacta atccaactaa aaactggact
      601 acgtgcaggt gaagtggcag gactaacatg ggactgtgtg ctatgggata catttgaaat
      661 aaagacatat cgacggtatg atacagttag acagcgttgg agcaaagcta aaacagaaga
      721 ttcaattcga acaatcccta ttgatgctga tacacttaat gttcttgaaa aactaaaaca
      781 agaacaagat gtgtttatcg aaaatggaac aatcacaaat gatgaaaata tgattttcgt
      841 agatttacat tataatatcg tgactaatgc aggcatcaac aaacacttaa aacaaatttt
      901 aaaaacatta cgcatctttc cccaaaatat gacaagcaca ggattacggc atacatattg
      961 ctccactatg ttagctatgg gtgtcgatat ttgggcagta tcaaaactca tgggtcataa
     1021 agatattact gaaatcactg aaacatacgg acatcttatc aaagaaaaag cagagattga
     1081 gaacaataaa gtccgttcag tattaaagag tttaattgaa aatgataaat agtgaccaaa
     1141 agttgaccaa ataacaaaag aaacgctgat aaatcaacgt ttctaatgct tatactatac
     1201 cggcggccgg ggtcgaaccg gcacgtcctt gcggacactg gattttgagt ccagcgcgtc
     1261 tgccaattcc gccacgccgg catatagttg aactggggta gctggattcg aaccaacgca
     1321 tgagggagtc aaagtccctt gccttaccgc ttggcgatac cccaatataa aataggcgag
     1381 tgaggggaat cgaacccccg aatgtcagag ccacaatctg atgtgttaac cacttcacca
     1441 cacccgccat ataacacggg cagtaggaat tgaacccaca ctgaaggttt tggagacctt
     1501 agttctacct ttaaactatg cccgtaaagg tatggagaga gagggattcg aacccccgaa
     1561 cccgaaggag cggatttaca gtccgccgcg tttagcctct tcgctatctc tccgaaatat
     1621 aatattaaat taatggcgcg agacggaatc gaaccgccga cacatggagc ttcaatccat
     1681 tgctctacca actgagctac cgagccaaat tcttaaagaa attgcgggag caggatttga
     1741 acctacgacc ttcgggttat gagcccgacg agctacctag ctgctccatc ccgcgataat
     1801 actaaggagg atgtgggatt cgaacccacg cacgctttta cacgcctgac ggttttcaag
     1861 accgttccct tcagccggac ttgggtaatc ctccgaataa tatagtccgt acgggattcg
     1921 aacccgtgtt accgccgtga aaaggcggtg tcttaacccc ttgaccaacg gaccatatga
     1981 tgggcacgag tggaatcgaa ccaccgacct cacgcttatc aggcgtgcgc tctaaccatc
     2041 tgagctacgc gcccaaacca agtttgggta tgaactatgt tcaaagcggg tgacgagaat
     2101 cgaactcgcg acaacagctt ggaaggctgt agttttacca ctaaactaca cccgcttata
     2161 tgggagttaa cgggatcgaa ccgctgaccc tctgcttgta aggcagatgc tctcccagct
     2221 gagctaaact cccaat
//
LOCUS       DASGAC010000229         2182 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.231, whole genome shotgun sequence.
ACCESSION   DASGAC010000229 DASGAC010000000
VERSION     DASGAC010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2182)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2182)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2182
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.231"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..819)
                     /locus_tag="U1335_002075"
     CDS             complement(<1..819)
                     /locus_tag="U1335_002075"
                     /inference="COORDINATES: protein motif:HMM:NF013540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5232500.1"
                     /translation="MKEKIASLIKRTRLEKGFSQKELSEGICAQAVISKIEKAEVSPS
                     VELFFKLVKKLDIDSSVILELFQLKKSTEESILTDELKSILYRREYDTLEYFLQFFSK
                     DSVSPIQMPYIQYLNGVLLFGKYKKSNEALEILEGLLPTLVGNANLFLRVGIAIAGIY
                     SELEEYVASMNQYESLIHHYHESNDWELKVLFQYGYSRILYLCNNFEKALVYNAESLE
                     LLKNRNTLFMLGNTLLMRANILAKRSIISEAIDMVKKSIVVYDLEGDELLKNLAQ"
     gene            complement(835..>2182)
                     /locus_tag="U1335_002076"
     CDS             complement(835..>2182)
                     /locus_tag="U1335_002076"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012235.1,HMM:NF012869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5232501.1"
                     /translation="LLNYLGNKGNALDVTESLAVLTVDLKLVEDKYFSVLFDCLYYSL
                     LGAVSLIYLVYLSPAISVLFIIFSFLPMLPAILFSKYLGTATENFTKSNEKFIRSIKD
                     IFQGFSVLWTYGANRKFLGMAETVVNDLENSNEALNNKHSIVNLVSSMLSWLSYIVPI
                     TVALVFVTQGKLDASIVIALFLASDRVIYPFRNVSNYLRMIQSTELTRKKLEKMLQDS
                     QQQEVSENHIDESILKPEIHFSGVAVGHGAAIIKNFNATVPYGRKVLIRGASGSGKTT
                     LLDSIQGVLQPLEGEISVLNHQKKISNPSNQMARIQQSPYYFEASLKENLLMALESVR
                     EEELLTLLSELGLVEELGEDCLEKYYGENGAQLSGGQKQRIEIARALLHNKKILLVDE
                     GTSAIDKQSSALIRKKLANLPITIFEVAHHYSESDLGLYDEIWEIHPNSGTIEKIL"
BASE COUNT          697 a          440 c          317 g          728 t
ORIGIN      
        1 ctgagctaaa ttttttaaga gctcgtcgcc ttctaagtca taaacaacta ttgatttttt
       61 gaccatatca attgcttctg aaataatgga gcgttttgct aatatgttgg ctctcattaa
      121 caaagtattg cctaacataa ataaagtgtt tcgattcttt aataattcta gtgattctgc
      181 attataaacc aaggcttttt caaagttgtt acacaggtac aaaattctag aatatccgta
      241 ttgaaataat actttcagct cccagtcatt tgattcatga tagtgatgaa tgagactttc
      301 atattggttc attgatgcta catactcttc taactccgaa tatattcccg caatagcaat
      361 accaactcgt aaaaatagat tagcatttcc aaccaaagta ggcagcaacc cttccaaaat
      421 ctctaaagct tcatttgact ttttgtattt cccaaataac aataccccgt taaggtattg
      481 tatatatggc atttgaatcg gagatacaga atcttttgaa aaaaactgca aaaaatattc
      541 caatgtatca tactctcttc ggtaaagaat ggatttcaat tcatccgtaa gaatagattc
      601 ttctgtactc ttcttcagtt gaaacaattc caatatcaca ctagaatcaa tgtctaattt
      661 tttgacgagc ttaaaaaata attcgactga tggagaaact tcagcttttt caattttact
      721 aataactgct tgagcacaaa taccctcaga cagttctttt tgactaaatc ctttctccaa
      781 acgcgtccgc ttaataagac tagcaatctt ttctttcaca attcacattc caattcataa
      841 tattttctct attgtaccac tattcggatg aatttcccat atctcatcgt ataggccaag
      901 atccgactct gaatagtgat gagcaacctc aaagattgta attggtaaat tggcaagttt
      961 tttacgaatg agggctgagg attgtttatc aattgccgat gtcccctcat caactaacaa
     1021 gattttctta ttatgaagga gggctctggc aatctcaata cgttgttttt gtcctcctga
     1081 taactgcgcc ccattttcac cataatattt ctctaaacaa tcttcaccta gctcttctac
     1141 caaccccagc tctgaaagca aggttaacaa ctcctcctca cggactgatt caagtgccat
     1201 taggagattc tcttttaaac ttgcctcaaa atagtagggc gattgttgga ttcttgccat
     1261 ttgattgcta ggattactta tttttttctg atgatttaat acagatattt ccccttccaa
     1321 cggttgcagt acaccctgta tgctatctag taaggtcgtc tttccacttc ctgaagctcc
     1381 tctaatcagc actttacgac catatgggac tgtagcatta aaatttttga taattgctgc
     1441 tccatgtcca acggctactc ctgaaaaatg aatctcaggc ttcaatattg attcatcaat
     1501 atgattttca gacacttcct gttgctgaga atcctgtaac attttctcta atttttttcg
     1561 agttagctcc gttgattgta tcattcgtaa atagttcgaa acatttctaa atggatagat
     1621 aacacggtca ctggctaaaa ataaagcgat aacaatacta gcatctagtt tcccttgggt
     1681 tacaaatact agagctacag ttattggaac aatataactt aaccacgaca gcatggaaga
     1741 aacaagatta actatgctgt gtttattatt taatgcctca ttactatttt ctaagtcatt
     1801 gacaactgtc tcagccatcc ctaaaaactt acgattcgca ccatatgtcc atagaaccga
     1861 aaaaccttga aaaatatctt ttatgctacg aataaatttc tcattcgact tagtaaagtt
     1921 ctctgttgca gttcctagat atttgctaaa tagtattgct ggcaacattg gaagaaatga
     1981 gaaaataata aataatacag aaattgcagg acttagatag acaagatata tcaatgaaac
     2041 tgcccctaaa agactgtagt ataagcaatc aaaaagaacg gaaaaatatt tatcttctac
     2101 taattttaaa tctactgtta ataccgcaag agactctgta acatctaatg cattcccctt
     2161 atttccaaga tagtttaaca gt
//
LOCUS       DASGAC010000230         2157 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.232, whole genome shotgun sequence.
ACCESSION   DASGAC010000230 DASGAC010000000
VERSION     DASGAC010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2157)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2157)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2157
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.232"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            110..373
                     /locus_tag="U1335_002077"
     CDS             110..373
                     /locus_tag="U1335_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019775469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein HPr"
                     /protein_id="HEM5232502.1"
                     /translation="MASKDFHIVAETGIHARPATLLVQTASKFASDITLNYKDKSVNL
                     KSIMGVMSLGVGQGADVTISAEGADADDAIAAITETMEKEGLA"
     gene            378..2111
                     /gene="ptsP"
                     /locus_tag="U1335_002078"
     CDS             378..2111
                     /gene="ptsP"
                     /locus_tag="U1335_002078"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016397822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HEM5232503.1"
                     /translation="MTEMLKGIAASDGVAVAKAYLLVQPDLSFETVTVEDTNAEEARL
                     DAALAASQNELSLIRENAVASLGEEAAAVFDAHLMVLADPEMIGQIKETIRAKKTNAE
                     TGLKEVTDMFIAIFEGMEDNPYMQERAADIRDVAKRVLAHLLGVRLPNPATIDEESIV
                     IAHDLTPSDTAQLNKQFVKAFVTNIGGRTSHSAIMARTLEIAAVLGTNNITEIVKDGD
                     VLAVNGITGEVVINPSEEVIAEFKVAGEAYAKQKAEWALLKDAQTVTADGKHFELAAN
                     IGTPKDVEGVNDNGAEAVGLYRTEFLYMDSQDFPTEDEQYEAYKAVLEGMNGKPVVVR
                     TMDIGGDKELPYFDLPHEMNPFLGFRALRISISETGNQMFRTQLRALLRSSVHGKLRI
                     MFPMVALLTEFRAAKAILEEEKANLLAEGVAVADDIQVGIMIEIPAAAMLADQFAKEV
                     DFFSIGTNDLIQYTMAADRMNEQVSYLYQPYNPSILRLINNVIKAAHAEGKWAGMCGE
                     MAGDQQAVPLLVGMGLDEFSMSATSVLRTRSLMKKLDTAKMEEYAHRALTECATAEEV
                     LELQKEYVDFD"
BASE COUNT          664 a          423 c          477 g          593 t
ORIGIN      
        1 aagaaaggta aaaaaatctt gaaaatgatt tcaaaaagtg gtataatgtc ttttataagg
       61 gttatcacaa ataactcaca attttgtaaa aataaaggag aatccaaata tggcttcaaa
      121 agacttccac attgtggcag aaacaggtat ccacgctcgt ccagcaactt tgcttgttca
      181 aactgctagc aaattcgctt cagacatcac attgaactac aaagataaat cagttaacct
      241 taaatctatc atgggtgtta tgagtcttgg tgttggtcaa ggcgctgacg taacaatctc
      301 tgccgaaggt gctgatgctg acgacgcaat cgcagctatc actgaaacaa tggaaaaaga
      361 aggattggca taagaatatg acagaaatgc ttaaaggaat cgcagcatca gatggtgttg
      421 ctgttgctaa ggcatatcta ctcgttcagc cagatttgtc cttcgaaact gttacagttg
      481 aagatacaaa tgcagaagaa gctcgtttgg atgcagctct tgcagcatct caaaacgagc
      541 tttctcttat tcgtgagaac gcagtagcta gcctaggtga agaggccgca gccgtatttg
      601 atgcacactt gatggttctt gctgacccag aaatgattgg tcaaattaag gaaactattc
      661 gtgctaagaa aacaaacgct gagactggtt tgaaagaagt aacggatatg ttcatcgcta
      721 tttttgaagg tatggaagat aacccataca tgcaagagcg tgcagcagat atccgcgacg
      781 ttgcaaaacg tgtcctagct cacttgcttg gcgttcgttt gccaaaccct gcgacaattg
      841 atgaagagtc aatcgttatc gcacatgatt tgacaccttc agatacagct caattgaata
      901 aacaatttgt taaagcattt gtaacaaata tcggtggtcg tacaagccac tcagccatta
      961 tggctcgtac acttgaaatt gctgctgtat tgggtacaaa taacattact gaaattgtga
     1021 aagacggcga tgtcctcgct gttaacggta tcacaggtga agtggttatc aacccttctg
     1081 aagaagtgat tgcagaattt aaagtagctg gtgaagccta tgctaagcaa aaagctgagt
     1141 gggcactttt gaaagatgct caaactgtta cagctgatgg caaacacttt gaattggcag
     1201 caaatatcgg tacaccgaaa gacgttgaag gtgtaaatga taacggtgca gaagctgttg
     1261 gtctttaccg tacagaattc ttgtacatgg actcacaaga cttcccaaca gaagacgagc
     1321 aatacgaagc ttacaaggct gttcttgaag gtatgaatgg caagcctgtt gtggttcgta
     1381 caatggatat tggtggtgat aaggaacttc cttacttcga tcttccgcac gaaatgaatc
     1441 cattccttgg tttccgtgcc cttcgtatct ctatctctga gactggtaac caaatgttcc
     1501 gtacgcagtt gcgtgccctt cttcgttcat cagttcatgg taaacttcgt atcatgttcc
     1561 caatggttgc cttgttgaca gaattccgtg cagcaaaagc aatccttgaa gaagaaaaag
     1621 ccaacttgtt ggcagaaggt gtagcagttg cggatgatat ccaagttggt atcatgattg
     1681 aaatccctgc agcagcaatg cttgcagacc aatttgccaa agaagttgac ttcttctcaa
     1741 tcggtacaaa cgaccttatc cagtacacaa tggctgctga ccgtatgaac gaacaagtgt
     1801 catacctcta ccaaccatat aacccatcaa tccttcgctt gattaacaat gttatcaagg
     1861 ctgcacacgc agaaggtaaa tgggctggta tgtgtggtga gatggctggt gatcaacaag
     1921 ctgttccact tcttgtaggt atgggcttgg atgagttctc tatgagtgca acatctgtac
     1981 ttcgtacacg tagccttatg aagaaacttg atacagctaa gatggaagaa tatgctcacc
     2041 gtgccttgac agaatgtgca acggcagaag aagttcttga acttcaaaaa gagtatgttg
     2101 atttcgatta ataagaaatt taaagtttgg agtagataaa ctacttcaaa ctttttt
//
LOCUS       DASGAC010000231         2156 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.233, whole genome shotgun sequence.
ACCESSION   DASGAC010000231 DASGAC010000000
VERSION     DASGAC010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2156)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2156)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2156
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.233"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            122..922
                     /locus_tag="U1335_002079"
     CDS             122..922
                     /locus_tag="U1335_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011922611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HEM5232504.1"
                     /translation="MGANQETLMYTLEKSIQKKADLFEHSFSAYAVRSILASLYLGLG
                     IVISLYTADKLNHVAEGLGKFSYGLMFGWGLLMILYMNAELGTSNMMYMTVASHRKTI
                     PTKTALKMLATCILFNFVGAVLVCYLVSLTLPYQHVDAHSYLFEATVAKLSKTPLTQF
                     IEGIFANIVVNIGVFTFLRIKDDAGRLISVIFVIFIFAFLGYEHVIANFSLFSLAFFA
                     NGGPVEGMTLLSVLSNFFFSGLGNYVGGGLFIGLLYSWLNNQSKLYVD"
     gene            complement(956..1651)
                     /locus_tag="U1335_002080"
     CDS             complement(956..1651)
                     /locus_tag="U1335_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002919316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HEM5232505.1"
                     /translation="MTELFSNPIFGIMLSIAAYLIGMLIYRRFPHPITTPLLVATGLI
                     IVFLKMTGISYKEYYAGGSYLNMLIVPSTVALGIPLYRSFHLMKHHIRSILLGIFVAC
                     IVNTVFTALIAKWFGMDFFLAISLFPKSVTTAMAVGITDKMQGIATITLVVVVATGIL
                     TSVLGPVFLKLLKIEDPVAVGLALGGTGHAIGTGTAIKYGHTQGAMAGLAIGITGIMY
                     VVISPIVAQIILQ"
     gene            complement(1644..2024)
                     /locus_tag="U1335_002081"
     CDS             complement(1644..2024)
                     /locus_tag="U1335_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HEM5232506.1"
                     /translation="MKLYVQFMIILIFSFLGEAISSLFHLPIPGSIIGLILLFLALEF
                     KVIRLRHINTVGNFLLANMTILFLPAAVGIMERFDAIKDYLLPIIIVILGAIFLNILV
                     IGFVVQFVKQKFEGDYIDTEGNHD"
BASE COUNT          710 a          416 c          388 g          642 t
ORIGIN      
        1 ttcaaaagtt aaattttttt ggacaacaac cattttatca agtataataa acaaagtaaa
       61 gccattcgac aaaaagaaaa cgtttactca aaaaagtagt agattcagta aggagattag
      121 gatgggagct aaccaagaga ctttaatgta tacacttgaa aagagtatac agaaaaaagc
      181 agatttattt gaacacagtt tttctgccta cgctgtacga tcgatacttg ctagtcttta
      241 tttaggattg gggattgtca tttctcttta tacagcagac aaactcaacc atgtcgcaga
      301 aggactcggg aaatttagct atgggttgat gtttggttgg gggctactca tgattttata
      361 tatgaatgcc gaacttggaa catccaacat gatgtatatg acagtagcca gccatcgaaa
      421 aacgattcct acgaaaacag ccctcaagat gttggcaacc tgtatccttt tcaattttgt
      481 cggtgctgtc cttgtttgtt acttggtttc attgacactg ccttatcagc acgttgatgc
      541 tcacagctac ctatttgaag caacggtggc caagctttca aagacacctt tgactcaatt
      601 tattgaagga atttttgcta atattgtcgt gaatatcggc gtatttacct tcttacgcat
      661 caaagatgac gctgggcgtc tcatttccgt tattttcgtc atctttattt ttgctttctt
      721 gggatatgag cacgtcattg cgaacttttc actcttctcc ctggcctttt ttgcaaatgg
      781 tggaccagtt gagggaatga ctctattaag tgtattaagc aatttcttct tttctggatt
      841 aggaaattac gtgggtggcg gtctctttat cggacttctt tatagttggt tgaataatca
      901 atccaaactt tatgtagact aaaaaaacta cggttggaat tccaatcgta gttttttatt
      961 gtaagataat ctgcgcaact attggactaa tcaccacata cataatgcct gtaatcccaa
     1021 tagccaagcc agccatcgct ccttgcgtat gtccatattt tatcgctgta cccgttccaa
     1081 tggcatgtcc tgttcctccc aaagcaagac caacagctac cgggtcttca atttttagta
     1141 gctttaaaaa gactggacca agaacacttg tcagaatccc tgttgcaaca acgactacaa
     1201 gagtaatagt tgctatccct tgcattttat cagtaatacc aacagccata gcagtggtga
     1261 ctgattttgg aaaaagagag attgctagaa aaaaatccat cccaaaccat ttggcaatca
     1321 gggcagtaaa gacagtattg acaatacagg caacaaaaat tcccaaaaga atacttcgaa
     1381 tgtgatgttt cattagatgg aaagaacgat acaaaggaat acccagagct actgttgaag
     1441 gcacaataag catatttaga taggaccctc ctgcataata ttccttatag gaaatacctg
     1501 tcatttttaa aaagacaata atcaatcctg tagctactaa tagtggggtt gtgattggat
     1561 gaggaaatct ccgatagatc agcattccaa ttaaatatgc tgcaattgat aacataatac
     1621 caaaaatagg atttgaaaaa agttcagtca tgatttccct ccgtatcaat atagtcacct
     1681 tcaaactttt gcttcacaaa ttgaacaaca aaaccaatta ctaagatatt taaaaaaatg
     1741 gcgcctaaaa tgacgatgat aataggaagt aaataatctt taattgcatc aaatcgctcc
     1801 ataattccta cagcagcagg tagaaagaga atggtcatat tggctaatag gaaattcccc
     1861 actgtattga tatgacgcag gcgaatcacc ttaaactcca aagccaaaaa tagaaggatg
     1921 agcccaatga tactacccgg gatgggcaga tgaaaaaggc tagaaatagc ttctcctaaa
     1981 aatgaaaata tcagaatgat cataaactga acatataact tcatagctcc tccaaagtgg
     2041 cctatttcca agattttccg agctctattc aatcgtcaac aactgtaaca tcgtgatagg
     2101 gcatttcttt ctgacaataa gtttactact ctgaaaatat ttttcaaggt tataaa
//
LOCUS       DASGAC010000232         2149 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.234, whole genome shotgun sequence.
ACCESSION   DASGAC010000232 DASGAC010000000
VERSION     DASGAC010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2149)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2149)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2149
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.234"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            71..1420
                     /gene="gorA"
                     /locus_tag="U1335_002082"
     CDS             71..1420
                     /gene="gorA"
                     /locus_tag="U1335_002082"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HEM5232507.1"
                     /translation="MKEFDIIAIGGGSGGIATMNRAAIYGAKAAVIEGSYLGGTCVNL
                     GCVPKKIMWYGSQVAEAIHHYGPEYGFTSQDVKFDFATLRKNREAYIERSRASYGNTF
                     NNNGVEVIQGFARFVDNQTVEVNGELIRAKHIVIATGAKPVVPAIPGSELGIVSDDVF
                     AWEELPSSVAVIGAGYIAVEMAGLLHGLGVQTDLFVRGNRPLRSFDTYIIDALMEEMQ
                     RTNLPLHTGKTPVSLEKTGDGQIQINFVDGSNHIAQKVLWAIGRKPNIDKLNLEATSV
                     QLTSSGHISVNEYQETAVPGIYALGDVTGEKELTPVAIKAGRLLAERLFNNKPTAKMD
                     YTTIPTVVFSHPAIGTVGLTEDEAIAQYGQDNVKVYTSAFTSMYTALENNRQMAKFKL
                     VTVGENEKVVGLHGIGYGVDEMIQGFSVAIKMGATKEEFDAVVAIHPTGSEEFVTMR"
     gene            complement(1510..>2149)
                     /locus_tag="U1335_002083"
     CDS             complement(1510..>2149)
                     /locus_tag="U1335_002083"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM5232508.1"
                     /translation="SSDFSETNKWRLTTILFSYEISKKKMMGFLEQTWRIYNQYLEQL
                     LETLSNEEKQSKHLLLESDDLYQVVFSDYINKESFEEVREKFVLPFLVHKMLYITAGN
                     FSCVGIGYQTYHYWSLLKRKGNINQRTREQVLKTLVDPTRFGILKFINEGIWSNKIIS
                     EKFGISSSAVTYQLKYLMEHQIIFQDTETRKYSINKPLLSQVLLDLKEELEL"
BASE COUNT          655 a          421 c          415 g          658 t
ORIGIN      
        1 agcggatttt tgattgataa gtaaaaaaac gatagaatga agataattat catttagagg
       61 agaaaaactc atgaaagaat ttgatattat tgccattggt gggggtagcg gcggtattgc
      121 tactatgaac cgtgctgcta tctatggggc taaggctgct gtgatcgaag gaagctatct
      181 aggagggacc tgtgttaacc ttggttgtgt acccaaaaaa attatgtggt acggttctca
      241 agtggctgaa gccattcacc actatggacc tgagtatggt tttaccagcc aggatgtaaa
      301 atttgatttt gccaccttgc gtaaaaatcg cgaagcctat attgagcgtt cacgcgcatc
      361 ctacggtaat acttttaata ataacggagt agaagttatc caaggtttcg cacgttttgt
      421 ggataatcaa acagttgaag tcaatggtga gctgattcgt gcaaaacaca ttgttatcgc
      481 aactggcgcc aaaccggtag tccctgctat tcctggtagt gagctaggga ttgtatctga
      541 cgatgtcttt gcatgggaag aattaccttc ttctgtggct gttattggtg ctggttatat
      601 cgctgtggaa atggccggtc tcctacatgg actcggtgtc caaactgacc tctttgttcg
      661 tggaaatcgc cctcttcgta gctttgatac ctatattatt gatgccttga tggaagaaat
      721 gcaacgtacc aaccttccac tccataccgg gaaaactcct gtcagtcttg aaaaaactgg
      781 tgatggacaa atccagatta actttgttga cggtagtaac catattgctc agaaggtcct
      841 ttgggcaatt ggacgtaaac caaatattga caaactcaac ctggaagcaa ctagtgttca
      901 acttacttct tcaggacata tttctgtcaa tgaataccaa gaaacagctg taccaggcat
      961 ctatgccctc ggtgatgtaa ctggtgaaaa agaattgaca cctgttgcaa tcaaggcagg
     1021 tcgccttttg gcagaacgtt tatttaacaa taaaccaacc gcaaaaatgg attacacaac
     1081 catcccaact gtcgtctttt ctcaccccgc tatcggaacc gttggtctaa ctgaggacga
     1141 agcgattgcc caatacggtc aggacaatgt aaaagtctat acttcagcct ttacttctat
     1201 gtacactgcc ctagaaaaca atcgccaaat ggctaagttt aaattagtaa ctgtgggaga
     1261 aaatgaaaaa gtcgttggac tgcacggcat tggctatggt gtcgatgaaa tgattcaagg
     1321 attctcagtt gctatcaaaa tgggagctac aaaagaagaa tttgatgccg ttgtcgccat
     1381 ccatccgaca ggttctgaag aatttgttac tatgcgttaa gaaaaaaaat ccagactagt
     1441 gcaaaaatcg cactgtctgg atttttctta caaaacaata accacaacta caatcatttc
     1501 aattttccat tacagttcca gttcttcttt taaatcaagt aacacttgag aaagtaaagg
     1561 tttatttata gagtactttc ttgtttcagt atcctgaaag ataatctgat gctccatcaa
     1621 atacttcaat tggtaggtta cagctgatga tgaaatacca aacttttcag aaataatttt
     1681 gtttgaccat atgccttcat taatgaactt taaaattcca aatcgtgttg ggtcaacaag
     1741 tgtttttaat acctgctctc gggttctttg attgatattc ccttttcttt tgagaagcga
     1801 ccaataatga taggtttgat acccaattcc tacgcatgaa aaatttcctg cagttatata
     1861 aagcatctta tgcactaaaa atggcaaaac aaatttttct cttacttcct caaacgattc
     1921 cttattaata tagtccgaaa aaacaacttg atagagatca tcactctcta atagtaaatg
     1981 tttcgactgc ttctcttcat tggataaggt ctctaacaac tgttctaaat actgattata
     2041 tattctccac gtttgctcta agaaccccat catttttttc ttgcttattt cataagaaaa
     2101 aagaatagtt gtcaaacgcc atttattcgt ttctgaaaaa tctgatgaa
//
LOCUS       DASGAC010000233         2139 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.235, whole genome shotgun sequence.
ACCESSION   DASGAC010000233 DASGAC010000000
VERSION     DASGAC010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2139)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2139)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2139
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.235"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            152..>2139
                     /locus_tag="U1335_002084"
     CDS             152..>2139
                     /locus_tag="U1335_002084"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012948.1,HMM:NF027869.1,HMM:NF027884.1,
                     HMM:TIGR04226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopeptide-forming domain-containing fimbrial
                     protein"
                     /protein_id="HEM5232509.1"
                     /translation="MKKLTKLFSLLTVLLTMFGPLGNLRHLVHANDAQPHKTAVVVHK
                     VLMSKNDFDTFALKTDDEKTRNGSELPKDQFAGYFGQSATEISGVTFKVYKKITQENA
                     QAVTGESLGISGDNDKYVPLEGEYGSKTTSESGAEFQLDNGVYIFVEDKVNSPYYNKT
                     NGADAGKELTEAQAVPFRIELPITRPDGQGYFDTSRDHKLHIYPKNTENKPTVTKTFK
                     DGSTENKNVAIGEEIEYKISTTIPKGSSYKTLVWEDTMLEGLDFVVNSITISSTELVS
                     ISKDTHFSQVEQDKRGFVLKANEEGLRAIEEAAKQRDITITVTYKGMLNDSAQVETLI
                     PNQVTFHYGNRPRTFTDEKPKPVTPDPNGNKIVVNKTWGNAVGPHPEVKFDIYEQETG
                     KKVGTVTLPANQNSAEYSTDLKAGVQYIVIEQPVSGFLPSYTVNGNGVVTVTNNPSDN
                     PPPLVPDKPKVITYGKRFVKTDDKDSDATDVKKLLGAEFIIRKDGREEYLALKDGDSK
                     VQDENDYKAKEAAYIEAVKVDSPEKENKKALRDAAYEKLNMQWKWVSNKEEAFIFISS
                     TDGNFEVKGLTAGRYDLIETKAPEGYALPSNLIQFEVGENTWTDTTLKQSINGHKQIK
                     NKKVTIPQTGGIGTLVFTVVGLSVMAFAYIAMKKRQAE"
BASE COUNT          760 a          357 c          437 g          585 t
ORIGIN      
        1 aaaccttgga aacgtatacg taaatagact agtcatcagt ttatctttta ttacttggtt
       61 aactggtttt gacgtacttt agtacagtct gtgactcgtt gcttagtagt agaagcaaac
      121 tgaaagacta taaaaagaaa aggagaaaat aatgaagaag ttaacaaaat tattctccct
      181 cttgaccgtt cttctgacga tgttcggtcc attgggaaat cttcgacatt tagtacatgc
      241 gaatgatgcg cagccacata aaacagctgt tgttgttcat aaagttttga tgagcaaaaa
      301 tgattttgat acatttgcat taaaaacgga tgacgagaaa acaagaaacg gaagtgaatt
      361 acctaaagat cagtttgctg gttactttgg acaatctgcg acagagattt caggggtaac
      421 atttaaggtt tataagaaaa taacacaaga aaatgctcag gctgttacgg gtgaatcgct
      481 tgggatttca ggtgataatg acaagtatgt accgttagag ggtgagtacg gaagtaaaac
      541 tactagcgaa tctggagcag agttccagct tgataatgga gtgtatattt ttgtagaaga
      601 taaggttaat tctccttatt acaataaaac taacggggcc gatgcaggta aagagttgac
      661 ggaagctcaa gctgtaccat tcagaatcga actgccaatc actcgtccag atggtcaagg
      721 ctactttgat actagtagag atcataaact tcatatctat cccaaaaata cagagaataa
      781 acctactgta acaaagacat ttaaagatgg cagtacggaa aacaaaaacg ttgcgattgg
      841 cgaagagatt gagtataaga tttctactac gattccaaaa ggttcttctt ataaaactct
      901 tgtttgggaa gataccatgc ttgagggatt ggactttgta gttaactcaa taactatctc
      961 ttctactgaa cttgtttcaa tttcgaaaga tactcacttc tcacaagttg aacaagataa
     1021 acgcggcttt gtattaaagg ctaacgaaga aggattgaga gctattgaag aggctgctaa
     1081 gcaacgtgat attactatca ctgttactta taaaggtatg cttaatgatt ctgctcaagt
     1141 cgaaacatta atccctaacc aagtaacttt ccattatggt aaccgtcctc ggacatttac
     1201 tgatgaaaaa ccaaaaccag ttacaccaga cccaaatgga aacaaaattg ttgtaaataa
     1261 aacttgggga aatgcagttg gtccacatcc agaagttaag ttcgatatct acgaacaaga
     1321 gacaggaaag aaagtcggga ctgtcactct tccagcgaat caaaacagtg ctgaatattc
     1381 tactgatttg aaagcaggcg tacaatatat tgttattgaa caaccagttt caggtttctt
     1441 accatcttat acagttaatg gtaatggagt tgtaactgtg accaataatc catcagataa
     1501 cccaccaccg ttagtaccag ataaaccaaa agtaatcacc tatggtaaac gctttgtgaa
     1561 aactgatgat aaagatagcg acgctactga tgtaaaaaaa ctattaggtg cagaatttat
     1621 cattagaaaa gatgggagag aagaatatct tgctttgaaa gatggtgata gcaaggtaca
     1681 agatgagaat gattataagg ccaaagaggc tgcttacata gaggctgtta aggtggattc
     1741 ccctgaaaaa gaaaacaaaa aagcccttcg tgatgcagca tatgaaaaat tgaatatgca
     1801 gtggaaatgg gtatccaata aagaagaagc atttatattc atttcaagta ctgatggtaa
     1861 ttttgaagtt aaaggcttaa ctgctggacg ttatgactta attgaaacaa aagctccaga
     1921 aggttacgct ctaccgtcca atttaattca atttgaagtt ggagaaaaca cctggacaga
     1981 cactactttg aaacaatcaa ttaatggaca caaacaaatc aaaaacaaaa aggttactat
     2041 tccacaaact ggtggcattg gtacccttgt cttcacagtg gttggtttga gtgtgatggc
     2101 atttgcctac attgccatga aaaagcgtca ggcagaaga
//
LOCUS       DASGAC010000234         2130 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.236, whole genome shotgun sequence.
ACCESSION   DASGAC010000234 DASGAC010000000
VERSION     DASGAC010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.236"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            22..2115
                     /gene="topA"
                     /locus_tag="U1335_002085"
     CDS             22..2115
                     /gene="topA"
                     /locus_tag="U1335_002085"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005591982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEM5232510.1"
                     /translation="MATKSVSKKKTTTKKNLVIVESPAKAKTIEKYLGKNYRVVASVG
                     HIRDLKKSSMSIDFDNNYAPEYINIRGKGPLINSLKKEAKNAKQVFLASDPDREGEAI
                     SWHLAHILGLDENDKNRVVFNEITKDAVKNAFKEPRAINHDLVDAQQARRVLDRIVGY
                     SISPILWKKVKKGLSAGRVQSVALKLIIDRENEINNFKPEEYWTIDASFKKGSKKFQA
                     SFYGIDGKKTKIENNEQVKEILARLDGDDFLVEQVERKERKRNAPLPYTTSTMQMDAA
                     NKINFRTRKTMMVAQQLYEGVSLGTGGTQGLITYMRTDSTRISPVAQAQAADFITERF
                     GATYSKHGNKVKNASGAQDAHEAIRPSNVNLTPESIAKYLDKDQLRLYTLIWNRFVAS
                     QMAAAVFDTMSVRLDQNGIVFAANGSQVKFDGYMAVYNDADKNKMLPDMEQGDTVVRA
                     STNPEQHFTQPPARYSEATLIKTLEENGVGRPSTYAPTIETIQKRYYVKLAAKRFEPT
                     ELGEIVNKLIVEFFPDIVNVKFTADMEQKLDDVEIGKEQWQKVIDGFYQPFKVELSKA
                     EEQMEKIQIKDEPAGFDCDVCGHEMVIKLGRFGKFYACSNFPDCRNTKQITKEIGVTC
                     PVCQKGQVIERKSKRNRLFYGCDRYPECEFTSWDKPVGRSCPKCDHYLVEKKVRGGGK
                     QVVCPNGDYEEDKIK"
BASE COUNT          702 a          399 c          472 g          557 t
ORIGIN      
        1 aaataattgt aaggtataag aatggctaca aaatcagtta gtaagaaaaa aacgacaacc
       61 aagaagaatc ttgtcatagt ggaatcacct gccaaggcca aaactattga gaagtatctt
      121 ggtaaaaact accgagttgt tgcttcagta ggtcatatcc gtgatttgaa aaaatccagt
      181 atgtctattg acttcgataa caactatgca cctgagtata tcaatatccg cggaaaaggt
      241 ccgcttatca attccttgaa gaaagaggca aaaaatgcca aacaagtctt tctggcaagt
      301 gacccggacc gtgaaggaga agctatttca tggcatttgg ctcatatttt gggccttgat
      361 gaaaatgaca aaaaccgggt tgttttcaat gaaatcacca aagatgctgt caaaaatgcc
      421 ttcaaggaac cacgtgctat caatcatgat ttggttgatg cccaacaggc tcgtcgtgtt
      481 ttagaccgta tcgttggata ttcgatttca cccattctct ggaagaaagt caaaaaagga
      541 ctgtcagcag ggcgagtaca atccgttgcc ctcaagctca tcattgaccg tgaaaatgaa
      601 atcaataatt tcaagccaga ggaatattgg acaattgatg ccagctttaa aaaggggagc
      661 aagaaattcc aggcttcatt ctacggtata gatggaaaga aaactaaaat tgaaaacaat
      721 gagcaggtta aagaaattct cgcccgactt gatggggatg atttcttagt agagcaggtt
      781 gagcgtaagg aacgcaaacg aaatgcacct ctgccttaca caacttctac tatgcagatg
      841 gatgcggcta ataaaatcaa tttccgtact cgtaaaacca tgatggttgc tcaacaactt
      901 tatgagggtg tcagtcttgg cacaggtggt acccaaggtt tgattaccta tatgcgtacg
      961 gattcaacac gtattagccc tgttgcacaa gcacaagctg ctgactttat cacggagcgt
     1021 tttggtgcta cctattcaaa gcatggtaat aaagtaaaaa atgccagtgg tgcacaagat
     1081 gcccacgaag ccattcgtcc atcaaatgtt aacttaacac ctgaatcaat tgcaaaatat
     1141 ctggacaagg accagttgcg actatataca ctgatttgga atcgttttgt cgcaagtcag
     1201 atggctgcag cagtttttga taccatgagt gttcgtttgg atcaaaatgg tattgtcttt
     1261 gctgctaatg gtagccaagt aaaattcgat ggttatatgg ctgtctataa cgacgctgat
     1321 aaaaataaaa tgttgccaga tatggaacaa ggtgacacgg tggtacgcgc gtcaacaaat
     1381 ccagaacaac actttactca gccaccggct cgctactctg aagcaacctt aattaaaaca
     1441 ttagaagaga atggggtagg tcgtccgtca acctatgcac caacgattga aaccattcaa
     1501 aaacgttact atgttaagct tgcggctaag cgatttgaac caactgaact cggagaaatt
     1561 gttaataagc tgattgttga atttttccca gatattgtca atgtcaaatt tacagccgat
     1621 atggaacaaa aattggatga tgtagaaatc gggaaagagc agtggcagaa ggtcattgac
     1681 ggtttctatc agccattcaa ggtagaatta tctaaggcag aagaacagat ggaaaaaatc
     1741 caaattaagg atgaaccagc tggctttgac tgtgatgttt gtggacatga aatggttatt
     1801 aaattaggac gttttgggaa attctatgca tgtagcaatt tcccagactg tcgcaatacc
     1861 aagcaaatta ccaaggagat cggcgtgact tgtccggttt gccaaaaagg gcaagtgatt
     1921 gaacgcaaga gtaaacgcaa tcgtcttttc tatggttgcg atcgctaccc agagtgtgaa
     1981 tttacctctt gggataagcc agtcgggcgt tcttgtccga aatgcgacca ctatctcgtt
     2041 gagaaaaaag ttcgtggtgg tggtaaacaa gttgtctgtc caaatggtga ctacgaagaa
     2101 gacaagatta aataagatta aataagaaaa
//
LOCUS       DASGAC010000235         2115 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.237, whole genome shotgun sequence.
ACCESSION   DASGAC010000235 DASGAC010000000
VERSION     DASGAC010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2115
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.237"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..1974)
                     /gene="uvrB"
                     /locus_tag="U1335_002086"
     CDS             complement(<1..1974)
                     /gene="uvrB"
                     /locus_tag="U1335_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003068887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HEM5232511.1"
                     /translation="MINRNTENQFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMG
                     ATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQ
                     PEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYS
                     DSVVSLRPGQEISRDQLLNSLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFR
                     VEFFGDEIDRIREIESLTGKVLGDVDHLAIFPATHFVTNDDHMETAIAKIQAELEEQL
                     KVFEAEGKLLEAQRLKQRTDYDIEMLREMGYTNGVENYSRHMDGRSEGEPPYTLLDFF
                     PEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVH
                     QIVYVSATPGDYEMEQTDTIVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARVEKG
                     ERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLERTEIIRDLRLGVFDVLIGIN
                     LLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADKVTESMR
                     KAMDETARRRQIQVAYNEEHGIIPQTIKKEIRDLISVTKAITQDKEEVVDFNALNKDE
                     CKAMIKKLEGQMQEAAEVLDFELAAQIRDMVIEL"
BASE COUNT          517 a          556 c          462 g          580 t
ORIGIN      
        1 caactcaata accatatcac gaatctgagc tgccagttca aagtcaagta cttctgctgc
       61 ttcctgcatc tgaccttcca gtttcttgat catagccttg cattcgtctt tgttgagggc
      121 attgaagtcc accacttctt ccttgtcctg agtgatagcc ttggtcacgc ttatcaggtc
      181 acggatttct ttcttaatgg tctgtggaat aattccatgc tcctcattat aagccacctg
      241 gatttgacgg cggcgggcgg tttcgtccat ggccttccgc atggactcgg tgaccttgtc
      301 cgcatacata atcacatgac cttcagagtt acgggccgca cgaccgatag tctggatgag
      361 tccacgctcg tttcggagga agccttcctt atccgcatcc aagatagcaa ccagactgac
      421 ttctggcacg tcaatccctt cacgcaagag gttaatccct atcaagacat caaagacgcc
      481 caaacgcaaa tcacggataa tctccgtacg ctccaaggtc ttgatgtccg agtgcatata
      541 cttgaccttg acgcccattt ctttcaggta gtcggtcaag tcctctgcca ttttcttggt
      601 cagggtagtg ataaaggttc gctcaccttt ctcaacacgg gcattgattt cgcccaaaag
      661 gtcgtccatt tgccccatgg ttggacggac ttccacctca ggatccagaa gcccggtcgg
      721 ccgaataatc tgctcgacaa tggtatcggt ctgctccatt tcatagtcac ccggcgtcgc
      781 agatacatag acaatctggt ggacatggct ctcaaattct tccctgcgca gcggacggtt
      841 gtccagtgca ctcgggaggc ggaaaccata gttgaccaac atctccttgc gtgagcggtc
      901 accattgtac atccccttaa tctgccccat ggtcatgtgg ctctcgtcaa tcataatcag
      961 gtagtcttca gggaaaaagt ccagcagagt ataaggaggc tcgccctcgc ttcgcccgtc
     1021 catgtgacga gaatagttct cgactccgtt ggtgtagccc atttcccgaa gcatttcgat
     1081 gtcatagtcg gttcgttgtt tcaatcgctg agcttctaag agttttcctt ctgcctcaaa
     1141 gaccttgagc tgctcttcca gttccgcctg aatcttggca atagccgttt ccatatggtc
     1201 atcgttggtc acgaagtggg tggcagggaa aatcgccaag tggtccacat cgcccaaaac
     1261 cttgcctgtc aggctttcaa tctcacgaat gcggtcgatt tcatccccga aaaactccac
     1321 acggaaggcg tgttcatctc gagaagccgg gaaaatctcc accacatcac cacgtacacg
     1381 gaaccgtccc cgttggaaat cgatgtcgtt gcgctcaaac tggatatcca ccagagaatt
     1441 aagcaactga tcacgggaaa tctcctgccc tggtcgcagg ctgaccacgc tatctgaata
     1501 ttccttgggt gaacccaaac cgtagataca agaaacagaa gccaccacaa tgacatcatt
     1561 gcgttctagc agagctgaag tcgcagagtg acggagtttg tcaatctcat cattgaccga
     1621 actgtccttc tcaatatagg tatcgctaga cggtacataa gcttctggct ggtagtaatc
     1681 atagtaagac acgaagtatt cgaccgcatt ttctgggaag aattccttga actcactgta
     1741 gagctgacca gctagggtct tgttgtgggc gatgactagg gtcggcttat tgacacgggc
     1801 gatgacctga ctcatagtgt aggtcttacc agtacccgtc gcccccatga gaatctgggc
     1861 tttttcgccc ccctcgatat tatcaaccaa ggtttcaatg gcttgaggct ggtcaccaga
     1921 tggtgaatat ttggacacaa gtttaaattg gttttcagta tttcgattga tcatacttct
     1981 attttatcat aagttcgact aatggagaaa cattctaaac cattcacaac tatgtccaaa
     2041 atattaaatt ttctcacatt ttaatgactt tgtatgttag aaattctaac attataaaaa
     2101 cctcgatttt gcatt
//
LOCUS       DASGAC010000236         2100 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.238, whole genome shotgun sequence.
ACCESSION   DASGAC010000236 DASGAC010000000
VERSION     DASGAC010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2100)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2100)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2100
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.238"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            184..1995
                     /gene="glmS"
                     /locus_tag="U1335_002087"
     CDS             184..1995
                     /gene="glmS"
                     /locus_tag="U1335_002087"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014621492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEM5232512.1"
                     /translation="MCGIVGVVGNTNATDILIQGLEKLEYRGYDSAGIFVTGGEQAHL
                     VKAVGRIAELSAKVGDKTEGTTGIGHTRWATHGKPTENNAHPHTSQTAGHILVHNGVI
                     ENYAEIKEEYLAGHDLKGQTDTEIAVHLIGQFAEEGLSTLEAFKKALKIIQGSYAFAL
                     IDANDADTIYVAKNKSPLLIGLGDGYNMVCSDAMAMIRETSEYMEIHDKELVIVKKDS
                     VEVMDYDGNAIERGSYTAELDLSDIGKGTYPYYMLKEIDEQPTVMRKLISAYTNEEGQ
                     ITVDADIIKAVQEADRIYILAAGTSYHAGFASKDFLEKLTDTPVELGISSEWGYNMPL
                     LSKKPLFVMISQSGETADSRQVLVKANEMGIPSLTVTNVPGSTLSREATYTMLLHAGP
                     EIAVASTKAYTAQIATLAILAKAVGDANGNAYAKEFDLVHELSIVAQSIEASLSEKDV
                     IAEKVEKLLSTTRNAFYIGRGSDYYVSMEASLKLKEISYIQCEGFAAGELKHGTISLI
                     EDGVPVLALISNHPHLASHTRGNIQEVVARGANVLTIVDEAVAKEEDDITVTTVHPFL
                     SAIAMVVPTQLIAYYATLQRGLDVDKPRNLAKSVTVE"
BASE COUNT          656 a          368 c          462 g          614 t
ORIGIN      
        1 cagactagaa cttactttgg gaatttagcc tgtatgttga aattagacta gaccaattaa
       61 aatgttgaca aggttaaaaa cttgttatat actgatttca ctggtctttt tagatataaa
      121 ttagactaga ccaattttta aagaaatgaa agccgatgtt aacaaacatc gtaggtgata
      181 tgtatgtgtg gaatcgttgg tgttgtagga aatacaaacg caactgatat tttgattcaa
      241 ggacttgaaa aattagaata ccgtggttat gattcagcag gtatttttgt gacgggtggt
      301 gagcaagctc atcttgtaaa agctgttggc cgcattgcag aattgtctgc aaaagttggc
      361 gataagactg aagggacaac agggatcggt catactcgtt gggcgactca tggtaagcca
      421 actgagaaca atgctcaccc tcacacttct caaactgctg gacatatcct agttcacaat
      481 ggtgtgattg aaaactatgc agaaatcaag gaagagtatc ttgcaggtca tgacttgaaa
      541 gggcagacag atacagaaat tgctgtacac ttgattggtc aatttgcaga agaaggtttg
      601 tcaactctag aagccttcaa aaaagcattg aagattattc aaggttcata cgcctttgct
      661 ttgattgatg ctaatgatgc agatacaatc tacgttgcca aaaataaatc tccacttttg
      721 attggtcttg gtgatggcta caacatggtc tgctcagatg ccatggctat gattcgtgag
      781 acaagtgaat acatggaaat tcacgataag gaattggtta tcgtgaaaaa agatagtgtt
      841 gaagtcatgg actatgatgg caatgcgatt gaacgtggca gctatactgc tgaacttgat
      901 ttgtcagaca tcggtaaagg cacttatccg tactatatgc tcaaggaaat tgacgagcaa
      961 ccaactgtta tgcgtaaatt aattagcgca tacacaaatg aagaaggtca aattacagtt
     1021 gatgcggata ttatcaaagc agttcaagaa gctgaccgta tctatatctt ggctgctggt
     1081 acgtcttatc acgcaggatt tgcctcaaaa gatttcttgg aaaaattgac ggatacacca
     1141 gtagaattgg gaatttcatc agagtggggt tacaacatgc cactcttgag caaaaagcca
     1201 ctctttgtca tgattagtca atcaggtgaa acagcagata gccgtcaggt tttggttaaa
     1261 gctaatgaaa tgggtattcc aagtttgact gtgaccaacg ttcctggttc taccttatca
     1321 cgtgaggcga cttacaccat gttgctccat gcaggtccag aaattgcagt agcttctacc
     1381 aaagcctata ctgcacagat tgcgacattg gcaatcttgg ctaaggctgt cggcgatgca
     1441 aatggtaatg cctacgctaa agaatttgat ttggtacatg aattgtccat cgtagctcaa
     1501 tctatcgagg ccagcttgtc agaaaaagat gtgattgctg aaaaagttga aaaactatta
     1561 tcgactactc gcaacgcttt ctatatcggt cgtggtagtg actactacgt ttctatggaa
     1621 gccagcttga aattgaaaga gatttcatac atccaatgtg aaggttttgc ggctggtgaa
     1681 ttgaaacacg gcaccatttc attaattgaa gatggtgtac cagtcttggc cttgatttca
     1741 aatcatccgc accttgcaag ccatactcgt ggtaatattc aagaagttgt tgcgcgtggt
     1801 gctaatgtct taacaatcgt agatgaagca gtagctaagg aagaagatga tatcactgtt
     1861 acaacagttc acccattctt gtcagctatt gcaatggttg ttccaactca gttgattgcc
     1921 tactatgcga ctttacaacg tggtttggac gttgataagc cacgtaactt ggcaaaatct
     1981 gtaactgttg aatagggaga aaaggttcgg acttcggacc ttttttctgt aaattgaaaa
     2041 aatatacaaa attttgttaa atttattaaa aattctgaaa aattctttga aatacaagat
//
LOCUS       DASGAC010000237         2088 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.239, whole genome shotgun sequence.
ACCESSION   DASGAC010000237 DASGAC010000000
VERSION     DASGAC010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2088)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.239"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(155..907)
                     /locus_tag="U1335_002088"
     CDS             complement(155..907)
                     /locus_tag="U1335_002088"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002985521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEM5232513.1"
                     /translation="MSRKPIIAGNWKMNKNPQEAQAFVEAIAGKLPAGDKIEAAIAAP
                     AVDLNALLWFAKDSELKVAAQNCYFEDAGAFTGETSPKVLAEMGVNYVVIGHSERRDY
                     FHETDEDINKKAHAIFRNGLTPIICCGESLETYEAGKAVEFVGAQVSAALKDLTAEQV
                     ASLVIAYEPIWAIGTGKSATKDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVNPS
                     NVAEYMACPDVDGALVGGASLEAESFLALLNF"
     gene            complement(1034..1831)
                     /locus_tag="U1335_002089"
     CDS             complement(1034..1831)
                     /locus_tag="U1335_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013793662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEM5232514.1"
                     /translation="MDLNEVRELTTYHGWQLDNAGDPVFYSGGSTPIYRVYNPGLRGL
                     HHWTTDFNEYSILPNHGWKQEGEAFFAESLGNPIQTQYASNILYNGFYSYVRGKYGYV
                     PIVNKKYPINSQCNPGENAEAKAAFLTLTNQMRQLGFSISHSYSGFRSYSLQNSLYNN
                     YVAQEGRAAADRYSARPGYSEHQTGLAFDVLNGQGELLQGAAAQWLAEHAHEYGFIVR
                     YLPEKEAITGYMHEEWHVRYVGKEAADIYHSGLTLEEYYKVAGGDYQ"
BASE COUNT          631 a          473 c          373 g          611 t
ORIGIN      
        1 gtgcaaggtt ggagatagca cttgcggagc aagtcacccc tgcagagtgc ggcaaagcga
       61 gttcaaacaa tccagtggag tgtttgaagt tggaaataag gaaacggagt ttcctcttac
      121 gtcgaagtaa taaaagaaaa actaaatgac tacattagaa gttcaacaaa gccaagaagc
      181 tttctgcttc aagtgatgca ccaccaacaa gcgcaccgtc aacgtctgga catgccatgt
      241 attcagcaac gtttgatggg tttacagaac caccgtattg aacgcgaacc ttgtctgcaa
      301 cttcttgacc gaaatcagca gcaacaacgt cacggacagc tttacacatg ttttgtgcat
      361 cgtctttagt agctgattta ccagtaccga ttgcccagat tggctcgtaa gcaataacaa
      421 gtgatgctac ttgttcagca gtcaagtctt tcaaagctgc agaaacttgt gcacctacga
      481 attcaactgc tttaccagct tcgtaagttt caagtgactc accacaacag atgattggag
      541 tcaaaccgtt acggaagatt gcatgagctt ttttattaat atcttcatca gtttcgtgga
      601 agtaatcacg acgctctgag tgaccgataa caacatagtt aacacccatt tcagccaata
      661 cttttggaga tgtttcacca gtgaaggcac cagcatcttc aaagtagcag ttttgagcag
      721 caactttcaa ttcagaatct ttagcgaacc acaaaagagc gttcaaatct acagctggag
      781 ctgcgatagc tgcttcaatt ttgtcgcctg caggcaattt tcctgcaatt gcctcaacga
      841 aagcttgtgc ttcttgagga tttttgttca ttttccagtt accggcaatg attggtttac
      901 gtgacatttc acttacctct tcttttttat tttacaaagc ccattatagc atattttttc
      961 aaaagattaa agtacaatat ggaattccca agcccgcatt tagcaaactg agactacgga
     1021 tttctactct tgtttactga taatctccac ctgcaacctt ataatattcc tctagtgtta
     1081 gacctgagtg ataaatatca gccgcttcct taccaacata tcgaacatgc cactcttcat
     1141 gcatataacc tgttatcgct tctttttcag gaagatacct tacgataaaa ccatattcat
     1201 gagcatgttc ggctaaccat tgagctgctg ctccctgcaa aagctcccct tgaccattca
     1261 aaacatcaaa agctaaacct gtttgatgct cactgtatcc aggacgggca gaataacgat
     1321 ccgctgccgc tcgtccctcc tgagcaacat aattattata tagggaattc tgtagactat
     1381 aacttctaaa accactataa gaatgactaa ttgaaaatcc gagctgacgc atttgattag
     1441 tcagagttag gaaagctgcc tttgcctcag cattttcacc tgggttacat tgactattta
     1501 taggatattt tttattaaca attggaacat acccatattt ccctcttaca taagagtaaa
     1561 aaccattata taagatatta gaagcatatt gagtctgtat cggatttcct aaactctctg
     1621 caaaaaatgc ctcaccctct tgtttccaac catggtttgg caagatactg tattcattga
     1681 agtcagtagt ccagtgatgt aaaccacgta atccagggtt ataaacacgg taaattggtg
     1741 tgctaccccc agagtaaaaa acaggatccc cagcattatc caactgccac ccatgatagg
     1801 ttgtcaattc ccttacctca tttaaatcca tcgtatataa gtgattttgc aatccatgat
     1861 tatataaacg ataaacagca tttcccgaac taggagcata ccaggctact ccctcatagc
     1921 cccaatgatg ttgctgatac agtacatctt tctcgttagc atcgatcgta taaagatgtt
     1981 ccccattttc ataattatat aatctgtaaa tagcaagact ctctcttgct gtttccgact
     2041 gactatctaa agcgaagatt atatgtgaag taaataggga aaggctgc
//
LOCUS       DASGAC010000238         2065 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.240, whole genome shotgun sequence.
ACCESSION   DASGAC010000238 DASGAC010000000
VERSION     DASGAC010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2065
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.240"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..589
                     /locus_tag="U1335_002090"
     CDS             <1..589
                     /locus_tag="U1335_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015077353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM5232515.1"
                     /translation="TIVYNHPYEKSYNHAILEASIAGAQKAGSQVQVIDLDAEKFNPV
                     MTSEDLLGFVKHQQVDPQAQAYSKHIGESDHLILIFPIWWELMPAMMKGFIDKVIFPG
                     AFYDYKANGYSMQARHEKLKTITIITTMNTPKFLYQLIYGNAIKNALIKGTFQKTGYK
                     NVKWMSYNMVKMVDEKKRKSWLEQIEKRIYQRVQQ"
     gene            787..1992
                     /locus_tag="U1335_002091"
     CDS             787..1992
                     /locus_tag="U1335_002091"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232516.1"
                     /translation="MKDSNLQAIVISLSLADNWEEARLEWTRVRLEKIDKKMVSKCLC
                     GKAHLQKVYSVSRTDLSNIKLSPIGSSCIKKFQNKELTKSLKKAEREYRLRSNDDFST
                     LKEIMDLDSLDEYYQKGYFKADRGNHFDPWNDYQLFKLALSGKQAERQLAIHKIERIL
                     YVVNDYLRPELNQVFDVEAYLKKLRRWKLHERVAAALRKKALEREKLLAQREREAERE
                     RQRQLDLQRWAQKKQDLLAWLDGQFDEESIALKNLLDSQTEDREICHKIIENQNFLER
                     KEAQERVAIAERERKQARVKSLCDWLRSHNRLDDLKKVQTIESVDKQLFMLEKWHTDY
                     VHHRRMEQRQQDELLYVVLELRRQVKKYYPYTERAKKCIEFVDSLDDLQEQRDWLHRF
                     LELMKKSGK"
BASE COUNT          721 a          314 c          474 g          556 t
ORIGIN      
        1 aacaattgtc tataaccatc cctatgaaaa atcatataat cacgctattt tagaagccag
       61 tatagctggt gctcaaaagg cgggtagtca agtgcaggtt attgatttag atgcagaaaa
      121 gtttaatcct gtgatgacta gtgaagattt gctcggattt gtgaaacatc agcaggttga
      181 tccacaagcc caagcttatt caaagcatat cggagaatca gaccatctca tcttgatttt
      241 tccgatctgg tgggagttga tgccagcgat gatgaaaggc ttcattgaca aagttatttt
      301 tccaggagca ttttacgact acaaagcaaa tggctatagt atgcaggcac gtcatgagaa
      361 attaaaaacc attactatta tcacaactat gaatacccct aaatttttgt atcaactaat
      421 ttatgggaat gctatcaaaa atgcgttaat taaaggaaca tttcagaaga caggttacaa
      481 aaatgtgaaa tggatgagtt ataacatggt aaaaatggtt gatgagaaga aaagaaaatc
      541 ttggctagag cagattgaaa aacggattta tcagcgtgtt caacagtaac aagtcaaatc
      601 gccttaaagg ctccaattct atgaaccttg gaaaagtggt tgaagaaata gaaaagtaat
      661 aagaatatga ttgaatttct tttgcaaaaa tgcggagaag ttcaatcatt tttatttgtt
      721 cgagaccttg aaaagtatgt ctatatttta taaaatatat tataacaaca tacaaaagag
      781 gttgagatga aggattcaaa tttacaggcg atagtcattt cgttgagtct agcggataac
      841 tgggaagagg caaggctgga atggacaagg gtaaggctgg aaaagattga taagaaaatg
      901 gtaagcaagt gtttatgtgg aaaggctcac ttgcagaaag tctattctgt ttctcgtaca
      961 gatcttagta acataaagtt atcgccaatc ggttcctctt gtatcaaaaa atttcaaaat
     1021 aaggaactga ccaagagttt gaaaaaggca gagcgagagt atcgtttgcg gtccaacgat
     1081 gacttttcaa ccctaaaaga aataatggac ttggatagtt tggatgaata ttatcagaaa
     1141 ggatacttta aggcagatag gggcaatcac tttgaccctt ggaatgatta ccaattattt
     1201 aagctagcct taagcggaaa acaagcggag cgacagttgg ccattcacaa gattgaacgt
     1261 atcctttatg tagtcaatga ttatttgaga ccggaattga atcaagtatt tgatgtggaa
     1321 gcttacttaa agaagctaag aaggtggaaa ctgcacgagc gagttgctgc tgcattgcgt
     1381 aaaaaagccc ttgaacgaga gaaattacta gcacagaggg aaagagaggc agaacgagag
     1441 cgacaaagac aactcgactt gcagaggtgg gctcagaaaa agcaggattt attagcttgg
     1501 ctagatggac aattcgatga agagtcaatt gctttgaaga acttgcttga ttcccaaacg
     1561 gaagataggg aaatctgtca taaaatcata gagaatcaaa actttcttga acgaaaagaa
     1621 gcacaggaaa gagtggctat cgcggaacga gagcgaaaac aggctcgtgt gaagagttta
     1681 tgtgattggc tccgttcaca taatcgtctg gatgacctga aaaaagttca gactattgaa
     1741 agcgtcgata agcaactgtt catgcttgaa aagtggcata cagactacgt acatcatcgt
     1801 cggatggaac agcgacaaca agatgagttg ttatatgtcg ttttagaatt gcgaagacag
     1861 gtgaagaaat attatcccta tactgaacgg gctaaaaagt gtattgaatt tgtggatagt
     1921 ttggatgatt tgcaggagca gcgtgattgg ttgcaccgtt ttctggaatt gatgaagaaa
     1981 agcggaaagt gagttttgtt caacggtaaa ttctcaaagt aagttctagt tctcgtcctt
     2041 ccagaagtta ctttgagaaa actgc
//
LOCUS       DASGAC010000239         2048 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.241, whole genome shotgun sequence.
ACCESSION   DASGAC010000239 DASGAC010000000
VERSION     DASGAC010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 2048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2048
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.241"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(100..1671)
                     /locus_tag="U1335_002092"
     CDS             complement(100..1671)
                     /locus_tag="U1335_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000673092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5232517.1"
                     /translation="MKFTDLQLSEDILLAVEKVGFETPSPIQEQTIPLALEGKDVIGQ
                     AQTGTGKTAAFGLPTLNKIDTNNQAIQALIIAPTRELAVQSQEELFKFGREKGVKVRS
                     VYGGSSIEKQIKALRSGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGF
                     LDDIEAIIERVPESRQTLLFSATMPEPIKRIGVKFMKEPEHVKIAAKELTNVNVDQYY
                     IRVKEHEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQN
                     KRLRVIRDFKNDQIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG
                     QSGQSITFVSPNEMGYLAIIEDLTKKRMKGLKPATAQEAFEAKKKVALKKIERDFADE
                     TIRGNFDKFKKDAIKLATEFTPEELALYVLSLTVQDPDSLPEVEIAREKPLPFKFAPG
                     QAKGKGGRGGRDRDRGGRRDGDRNRDRGGRRGDRNRRDDKFKRDNRRQDNKKPHQRTS
                     SEKKTGFVIRNKGER"
BASE COUNT          552 a          477 c          417 g          602 t
ORIGIN      
        1 ttatactctg ttttcattat ttgtcaagaa ctatttcgat tattttctaa atagatttca
       61 aaaaaaacag accactcttt atggtctgtc aaatacggtt tatctctcac ccttattgcg
      121 gataacaaag cctgttttct tttcacttga tgtgcgttga tgtggttttt tgttatcctg
      181 acggcggttg tcacgtttga acttgtcatc acgacgattg cggtcaccac ggcgtcctcc
      241 acggtctcgg ttgcggtcac catcacgacg accaccacga tcacggtcgc gaccaccacg
      301 gccacccttg cccttggctt gaccaggagc aaacttgaat ggcagtggtt tttcacgtgc
      361 gatttccact tctggcaaac tatctggatc ctgtacggtc agactaagta cgtagagagc
      421 aagctcttca ggcgtaaatt cagtcgccag cttgattgca tctttcttaa acttatcaaa
      481 gtttccacga atggtctcgt ctgcgaagtc acgctcaatc tttttcaagg caactttctt
      541 cttggcttca aatgcttcct gagcagttgc tggcttgaga cctttcatac gtttcttggt
      601 caaatcttcg atgatggcca agtagcccat ctcatttgga gacacaaagg tgatcgactg
      661 acctgattga cccgcacgac cggtacgacc gatacgatga acatagcttt ctgggtcttg
      721 tggaatatcg tagttgtaga catgtgtcac acctgaaata tccaaaccac gggccgcaac
      781 gtccgtcgca acaaggacat caatctggtc atttttaaag tcacgaataa cacgaagacg
      841 cttgttctgg tccaaatctc cgtgaatacc ttctgcacgg aaaccacgca gtttcaaacc
      901 acgagtcaat tcatcaacac ggcgcttagt acgaccgaag acgatagaca attctggctg
      961 gtcaacgtcc ataaggcgtg tcatggtgtc gaatttctca tgttctttga cacggatata
     1021 gtattgatcc acgttgacgt tggtcaattc cttagccgca atcttaacgt gctcaggctc
     1081 tttcatgaac ttgacaccga tacgcttgat tggctcaggc atggtcgcag aaaatagaag
     1141 agtctgacga ctttctggca cacgttcgat gattgcttca atatcgtcca agaagcccat
     1201 attgagcatc tcatcagctt catcaagaat cagagtctca acaccgtcaa gtttgagggc
     1261 cttgcgtttg attagatcca acaaacgccc tggtgtacca acaacaatgt gggcacctga
     1321 acgtagggcc ttgatttgtt tttcaatgct agaaccaccg taaacagagc ggactttcac
     1381 acccttttca cgaccaaatt tgaagagttc ttcttgactt tgcaccgcca actcacgcgt
     1441 tggagcaata atcaaggctt gaattgcttg attgtttgta tcaatcttgt tgagagttgg
     1501 cagaccgaaa gctgcagttt ttcctgtacc tgtctgggcc tgaccaatca catctttgcc
     1561 ttccaaagca agcggaatgg tctgctcttg gattggtgac ggcgtttcaa aaccaacctt
     1621 ctcaacggca agcaaaatgt cttctgataa ttgtaaatct gtaaatttca attatgatac
     1681 caagtgcgtt aagaaaacaa ggtgaaaata ggagactgac gcagtgtggg tacacactag
     1741 gaagtctatc tttttcacga agtttttagc acgggttcga atactcttcc cgagctagtt
     1801 tcctaacgca tttcctttct tttacaaggc agtgcgaagc taccttatct cacttttttt
     1861 gtaacaatta tttccactgg cagcgaacta accagtatca gacttgtaac ttaactagta
     1921 taacacattc taagcataaa ggttggcttt tgccttgaaa ataaaaataa tacgttttca
     1981 aaaaaaactt aaaaatattt gaaggtgaga aagtgagaaa ttaagactat ttgaatcata
     2041 gtttgaac
//
LOCUS       DASGAC010000240         1985 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.242, whole genome shotgun sequence.
ACCESSION   DASGAC010000240 DASGAC010000000
VERSION     DASGAC010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1985)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1985)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1985
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.242"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..731
                     /locus_tag="U1335_002093"
     CDS             <1..731
                     /locus_tag="U1335_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GHKL domain-containing protein"
                     /protein_id="HEM5232518.1"
                     /translation="VLFTASLLYLNYRNKEKQDKEIQELKDKQLTDLSRYSRHVESLY
                     KEIRSFRHDYTNILISLNEAIKEEDIVAIRSIYQEVIADSDRKFYDGKYDIARLSNIQ
                     NPAVKSLLSSKMLEAQKKGIAISVEVDAEIEPPALELIEFITILSILLDNAIDAAEQC
                     TNGNIVFAYFQEDDRKIVVVENTTVEDKVVTSHIFKYGHSTKGDNRGIGLANVKTILD
                     NYPKFSISTNSSNHRFVQELVFLD"
     gene            1152..1319
                     /locus_tag="U1335_002094"
     CDS             1152..1319
                     /locus_tag="U1335_002094"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232519.1"
                     /translation="MIWLIKLLLIVVISIPVTSILQPFHNHYLNGFTVAVISVIVSHL
                     VDKYGKGGDEV"
     gene            1806..>1985
                     /locus_tag="U1335_002095"
     CDS             1806..>1985
                     /locus_tag="U1335_002095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232520.1"
                     /translation="MTVKKKIAMTEEQLLHVAMFVYTLYVLYLLVTKNFTSRFITPYG
                     LYLFILVEEKLEKFIK"
BASE COUNT          676 a          272 c          391 g          646 t
ORIGIN      
        1 ttgttctttt tacagcaagt ttattatatc tgaattacag aaataaagaa aagcaagata
       61 aagaaatcca ggagttgaag gacaaacaat taacagattt aagccgttat agtcgtcatg
      121 ttgagtcact ttataaagaa attcgaagtt tccgacatga ctacactaat attcttatta
      181 gtctgaatga agcaattaag gaagaggata ttgttgcgat tcgttcaatt tatcaagaag
      241 tgatagcaga ttcggataga aaattctatg atggaaagta cgatatagct agattatcca
      301 atatacaaaa tcctgctgtg aagagtttgc tgtcatctaa gatgttggag gcacaaaaaa
      361 aaggtattgc aatttctgtg gaagtagatg ctgaaattga accacctgct ttagagttga
      421 ttgaatttat aacgattctg tctattttat tagataatgc tatcgatgct gcagagcagt
      481 gtacaaatgg aaatattgta tttgcctact tccaggaaga tgaccgaaaa attgtggttg
      541 tagaaaatac tactgtcgaa gataaggtag taacaagtca tatctttaag tatggtcact
      601 ctacaaaagg agataatcga ggaattggct tggccaatgt gaaaactatt ttagataact
      661 atcctaaatt ttctatatca acgaacagta gcaatcatcg atttgttcag gagttggtgt
      721 ttttagatta atatttatag atgtaagtcc agtcgaaagg ctggattttt tgcattttct
      781 cgaaaaaatg gtcattcatt acaaaatagc gaccgttcat gacatggatg aaaaaatcgg
      841 gctgagttgg cttatactaa atgtgtaaag aaacaaggaa actattttaa aaggaggtcg
      901 ttaacatgca aagcgagaat agaggcacta aatatgtgat gaacgtaata aaaaatacaa
      961 tctacctatc tatgtttgca gtacttgttt tggatttgat tatggaaggt aaaataaatt
     1021 ttgaatacat tttaggatgg ggaatattgt tatatttcat tgatgactga tagtctcgca
     1081 tattttgaca gtaactagca aatgcaattt tggttacgat ctactcagcg tatcgtagga
     1141 ggaatgattt tatgatttgg cttattaaac ttctattgat tgttgtaatt tccattcctg
     1201 taacaagtat tttacagcct tttcacaacc attacttaaa tggattcacg gttgcggtca
     1261 tttccgtcat tgtgtcccat ttagtggata aatatgggaa aggtggggat gaagtatgag
     1321 taaagagctg aaaaggatgt tgaaactcgg gacacttttc cttgccttat ttatctttaa
     1381 tatgtttttt cttaaatggt tgtctgttat aggatttgtt attcatttta gcgaaattag
     1441 ttatttggtt ccaccgctgt tttcagtcat cgttctatcg atgattgaaa aaaagagaag
     1501 taagaaaacg actaaatgaa aaaatggtcg ttcattacaa aatatcgaca gttcatgaca
     1561 tggatgaaaa aatagggccg agttgactta tactaagagt gtaaaaaaca aaaaggggac
     1621 acgagcatga atactttaaa aacaattgtt aaacaccgtc atttccgctc cctacttgta
     1681 ggactcggag caggagctat catttgtcta tggggagtgt attatggaat gatttaccta
     1741 ttcagttatc ttgtctttag aggtttgatt tatatggtaa aaaaataaga acaaggagaa
     1801 atgagatgac agtaaaaaag aaaatcgcta tgacagaaga acaattgcta catgtcgcga
     1861 tgtttgtcta taccttgtat gtgctatact tactcgtcac taagaatttt acatctcgct
     1921 tcataactcc ctatggactg tatctattta ttctcgttga agaaaaatta gaaaaattta
     1981 tcaaa
//
LOCUS       DASGAC010000241         1951 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.243, whole genome shotgun sequence.
ACCESSION   DASGAC010000241 DASGAC010000000
VERSION     DASGAC010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1951
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.243"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..731)
                     /locus_tag="U1335_002096"
     CDS             complement(<1..731)
                     /locus_tag="U1335_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012028606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEM5232521.1"
                     /translation="MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPI
                     IVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKELTDDDLLYQAIIENLQRSNLNP
                     IEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
                     RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLRK
                     TLGTATKIIKKKNGSGEIRISFNDL"
     gene            complement(792..1946)
                     /locus_tag="U1335_002097"
     CDS             complement(792..1946)
                     /locus_tag="U1335_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002892211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEM5232522.1"
                     /translation="MLFVIGFFGGIIGALSASFFQPQVQQANSTITSVSNVQYNNETS
                     TTKAVEKVQNAVVSVINYQKSANNSLGAIFGNIESSDELAVAGEGSGVIYKKDGQYAY
                     IVTNTHVINNAEKIDILLASGEKISGELVGSDTYSDIAVIKISADKVTAVAEFADSDT
                     IKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQSEDGQTISTNAIQTDTAINPG
                     NSGGPLINIQGQVIGITSSKITSSSVSSSGVAVEGMGFAIPANDAVAIINQLEKAGKV
                     SRPALGVHMVNLTTLSTSQLEKAGLSNTELTSGVVIVSTQSGLPADGKLETFDVITEI
                     DGETIQNKSDLQSALYKHQIGDTITVTYYRNNQKQTVDIKLTHSTEELSE"
BASE COUNT          544 a          370 c          352 g          685 t
ORIGIN      
        1 tcgaggtcat taaagctaat ccgaatttct ccgctcccgt ttttcttctt gataattttt
       61 gtagctgttc caagagtttt acggagtgaa tcttcctgtt cttttaaaaa ttggtcgcgt
      121 tgtttaagct tagtgtgttt tttcttattt gcagctatta atttttcaag cgtacgcaca
      181 cttaaatctt ttgataaaat gagttgaacc cattcggctt gcttttcttc tgaaaatgac
      241 accaattgtc gcgcgtgccc ttgtgaaatt tttccttctt ctacagcttg tttagtctga
      301 gatgatagat ttagtaggcg caataaatta ctgatatatg gtcttgattt tcccatgatt
      361 tgagcaactt catcatgcgt taaccctcta ctaatcaatt tttgataaga ggctgcttct
      421 tctatcggat ttaagttaga acgctgtaga ttctctatga tagcctgata gagtaaatca
      481 tcatcagtta gttcctttac cactgctggt attgtagtca gtccagctaa ttgactggct
      541 cgcaaccttc tttctccagc taataattcg tatccgataa tagaagattt tcttacaata
      601 atcggttgaa ttaatccatt ttccttaatg gattgagcga gctcaagtag ctccttttca
      661 tcaaaatgaa ttcttggctg atagggattg ggatggattt ctgaaatatt tagtgtacgt
      721 aattcttcca tatatcctta ttctagcaaa aaaaatgaga ctttacaatt gtgtaaagtc
      781 tcatttgtca attattcgct aagttcttct gtagaatgtg tcaacttaat gtcaacagtt
      841 tgtttctgat tattgcggta ataagttaca gtgattgtgt ctccaatttg atgtttgtag
      901 agagcgcttt ggagatcact cttattttga atagtttctc cgtcaatctc agtaatgaca
      961 tcaaaagttt ctaattttcc atctgcaggt agtccacttt gtgtagagac aattacgaca
     1021 ccggatgtta attccgtatt tgataatcca gctttttcta attgactagt tgacaaggtc
     1081 gtcaagttaa ccatatgaac tccaagagca ggtcggctaa cttttccagc tttctcaagt
     1141 tgattgataa tggctacggc atcatttgca ggaatagcga atcccatccc ttccacagcc
     1201 acacctgagc tacttacaga acttgaggtg attttgctag aggtgatacc aataacttgt
     1261 ccttggatat taatcaatgg tcctccagag tttccagggt tgatagctgt atcggtttga
     1321 atagcgttgg ttgagattgt ttgaccatct tctgattgtg aagtaactgt ccgacttaga
     1381 ctagaaataa taccttgagt aactgtatta gcgtagacgc tacctagagg actaccaatt
     1441 gcgatagcag tttctccaac tttaattgta tcggaatcag caaattcagc aacagcagtg
     1501 actttatctg ctgatatttt tataacagct atatcagaat atgtatcgga accaacgagt
     1561 tcaccgctga ttttttctcc agatgctaaa agaatatcaa tcttttctgc gttattaata
     1621 acatgcgtat ttgttacaat ataggcatat tgaccatctt ttttatagat aaccccagac
     1681 ccctctccag caacagctag ttcgtcagat gattcaatat ttccaaagat agcaccaaga
     1741 ctattgttgg ctgacttttg gtaattaata acagacacaa cagcattttg tactttctct
     1801 acagcttttg tggtggaagt ttcattattg tattgaacat tgctgacact agtgatagta
     1861 gaatttgctt gttgaacctg tggttggaag aaagatgctg ataaggcccc aataataccc
     1921 ccaaaaaatc caattacaaa taaaatcgca a
//
LOCUS       DASGAC010000242         1940 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.244, whole genome shotgun sequence.
ACCESSION   DASGAC010000242 DASGAC010000000
VERSION     DASGAC010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1940)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1940)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1940
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.244"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..823
                     /locus_tag="U1335_002098"
     CDS             <1..823
                     /locus_tag="U1335_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HEM5232523.1"
                     /translation="YITEFLATALLIIIGNGTVANVDLKGTKGNNSGWILIAIGYGLA
                     VMMPALMFGNVSGNHINPAFTLGLAVSGLFPWAHVAQYIVAQLLGAMFGQLVVVAVYK
                     PYFLKTENSNHILGSFSTISALDNGTKESRKASTINGFLNEFAGSFVLFFGALALTKN
                     FFGAELVGKIIEQGYDKTVAETMVAPYTSGSIAVAHLGIGFLVMALVACVGGPTGPAL
                     NPARDLGPRLLHHFLPKTVLGESKSDSKWWYAWVPVVAPIIASIAAVALFKFLYL"
     gene            955..1113
                     /locus_tag="U1335_002099"
                     /pseudo
     CDS             955..1113
                     /locus_tag="U1335_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921851.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 family protein"
     gene            1243..1857
                     /locus_tag="U1335_002100"
     CDS             1243..1857
                     /locus_tag="U1335_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HEM5232524.1"
                     /translation="MTDQLQALLKDYQPQPLGEKRSYAVFLPLVWSDNQWQVLYEIRS
                     ESISQPGEVSFPGGGIDEGETAEEAAIREVIEELDIQQEQVELLGEIDYLVFGRSTIR
                     CFVGRLHLDWQTLQPNDEVARFFTVPLETLLKTSPVYYQLDSQIVPDCDFPFERLRGG
                     VDYPFSHHKRSVPFYENLPENIWGMTAQFTHRFTEIINQKTSPR"
BASE COUNT          513 a          392 c          430 g          605 t
ORIGIN      
        1 atatatcact gaatttttag cgactgcact ccttattatc attggtaatg gtacagttgc
       61 aaacgttgat ttaaaaggca caaaaggaaa caattctggt tggattctca ttgcgattgg
      121 ctatggtttg gcagttatga tgccagcatt gatgtttggt aacgtttctg gtaaccatat
      181 caacccagcc tttacacttg gtttggctgt ttcaggtctc ttcccttggg ctcacgttgc
      241 tcaatacatt gttgcgcaat tgttaggtgc aatgtttggt cagttagtgg ttgtagcagt
      301 atacaaacct tacttcttga aaactgaaaa ttctaaccac attcttggtt cgttctcaac
      361 aatcagcgcg cttgacaatg gtacaaaaga aagtcgtaaa gcttcaacta ttaatggctt
      421 cttaaatgag ttcgctggtt catttgtatt gttctttgga gcacttgctt tgactaagaa
      481 tttctttggt gcagagcttg ttggtaaaat cattgaacaa ggttacgaca aaacagttgc
      541 tgaaacaatg gttgctccat atacttcagg ttcaatcgca gttgctcact taggcattgg
      601 tttcctagtt atggccttgg tagcctgtgt cggtggtcca actggtccag ctcttaaccc
      661 tgctcgtgac cttggtccgc gtcttcttca ccacttcttg ccaaaaacag tacttggtga
      721 atcaaaatct gattcaaaat ggtggtatgc ttgggtgcca gtggttgctc caattatcgc
      781 atcaattgcc gctgttgcac tattcaaatt cttgtatctt taatagtgaa cccgattcgt
      841 cgggtttttc ttttttgttt tatggatatt gagatgattc ggttgtctgc tctgctattt
      901 tcttaaaagt tatgctacag taaagctaga aaaaatcgga aaagaggcta gaatatgtca
      961 gatgttattg cttttggtta tggaagcagt cgagcggaga tgcagctcaa gcggctcaat
     1021 cgccatggaa tcatcgcagg tgcgacaggt acagggaaga cagtgacctt aaaggtcttg
     1081 gcagagcagt tgagtgatgc gggaatccct attcttatac tgtctgtacc tcggttccgg
     1141 gtatgaaagc aaattcgttc ggctatatct agacaaagtt cttgccagat gccacaaaat
     1201 tcgttaaaat aaacgtaaat cactagttag taaggagttg ctatgactga tcaattgcag
     1261 gcattattga aagactatca gccccagcca ttgggtgaaa aacgttctta tgcagtcttc
     1321 ttgcccttag tctggtcaga caatcagtgg caggtcttat atgagattcg gagcgagtcc
     1381 atttctcaac cgggagaagt ttcctttcca ggtggcggaa ttgatgaagg cgagacagca
     1441 gaggaagcag ccattcgtga ggttatcgaa gaacttgaca ttcaacagga acaagttgag
     1501 ttgctggggg aaatcgatta tctcgttttc ggtcgctcga cgattcgctg ttttgtcggt
     1561 cgacttcact tggactggca gacccttcaa ccgaatgatg aagtagctcg attctttaca
     1621 gtcccactag aaaccttgtt gaaaacgtcc cctgtctatt atcaactgga ttcacagatt
     1681 gtcccagatt gtgactttcc ctttgaacgc ttgagaggag gagttgacta tcctttcagt
     1741 catcacaaac gctccgtccc cttttatgaa aatctaccag aaaatatctg gggaatgact
     1801 gcccaattta cccatcgttt tacggaaatc ataaatcaaa aaacttcgcc cagatgagcg
     1861 aagttaaagt caagccaata acaagacctg caatttttcc gttgcccttt ttgttcataa
     1921 aaattttaga ggagattatg
//
LOCUS       DASGAC010000243         1919 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.245, whole genome shotgun sequence.
ACCESSION   DASGAC010000243 DASGAC010000000
VERSION     DASGAC010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1919
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.245"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            29..934
                     /locus_tag="U1335_002101"
     CDS             29..934
                     /locus_tag="U1335_002101"
                     /inference="COORDINATES: protein motif:HMM:NF012745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM5232525.1"
                     /translation="MTEKTQPSVTVLIPVYNGEEHIGDCLDSLLKQSYDNYQIVVVND
                     GSRDKTLEKLQQYPVKILSYEENKGISYALNYGIDHIDTDYIIRMDADDLAHYDRIRI
                     QVNFMENNPGVFMSGCTSYPGPVHGNKWEVAFGERRLTTFNELRTFYLFHPYLLHPGV
                     IFRTKSWKEKGYRYDSRFDGVEDFELHRRIIMEEEVYLLHLHLIHVRAREGSASSVPQ
                     SVTLERLNRANRHFYQSHGVPYEGDMLYLGKTMFPATYSTSRAELKKAENFACQLLEV
                     DYFKQRLKRDIIKPLFAYLYQIARE"
     gene            1027..1827
                     /locus_tag="U1335_002102"
     CDS             1027..1827
                     /locus_tag="U1335_002102"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012948.1,HMM:NF037372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5232526.1"
                     /translation="MKDLLPSGFDTKFDETVEPKQPTETTVKVSDGTWTFTKYDADSK
                     VVDEAEEKFVGTWTFTPSETPEEKPAKVVHEFVSGTPGKELPQEVKDLLPSGFDTKFD
                     ETVEPKQPTETTVEVSDGTWTFTEYDADSKVVDEAEEKFVGTWTFIPSTDGGTTPPTD
                     GGVNPPTDGGTTPPTDGGVNPPIDGGTTPPTDGGVNPPTDGGTTPPTDGGTTPTPPTG
                     TITVTPKAGTTQLPNTGEASTSPLYGVLAFATGLAGLFGLKKKKTSST"
BASE COUNT          567 a          440 c          460 g          452 t
ORIGIN      
        1 attgtttttt tggagaggag gagatgtttt gacagagaaa actcaaccat ctgtaacggt
       61 gcttattcct gtttataacg gggaggaaca catcggagat tgtttggata gtctattgaa
      121 acaaagctat gataattatc agatagtggt tgttaacgat ggtagtagag ataaaacttt
      181 agaaaaattg caacaatatc ctgtgaaaat tctttcctat gaggagaaca aaggcatttc
      241 ctatgctctc aactatggca ttgaccatat cgatacagat tatatcatcc gtatggatgc
      301 agatgatttg gctcattatg accgtattcg gatacaggtc aattttatgg aaaataaccc
      361 aggggtcttt atgagtggct gtaccagcta tccaggccct gttcatggca acaagtggga
      421 ggtggctttt ggtgaaagac gcttaaccac ctttaatgaa ttgaggacat tctatctttt
      481 tcatccctac ctcctgcacc ctggcgtgat ttttaggaca aagagctgga aggagaaagg
      541 gtaccgctat gactcccgct tcgatggggt tgaggacttt gagcttcaca ggcgaatcat
      601 catggaagag gaggtctacc tgcttcacct ccatctgatc catgttcgag ctagagaggg
      661 cagtgcttcg tcagtccctc agtctgtcac cctcgagcga ctgaatcggg ccaatcgcca
      721 cttttaccag agccatggag tgccttacga gggagatatg ctctatctgg gcaagaccat
      781 gttccctgct acctactcga ccagtagagc agagctaaaa aaagcagaga actttgcctg
      841 ccagctactg gaagtagact atttcaaaca acggctgaag agggacatca tcaagccact
      901 ctttgcctat ctctatcaaa ttgctagaga ataagcttta cttgtctctt cagaccattc
      961 aattaagatt caaaggttgt tcatgagttt gtcagcggca ctccaggtaa agagcttcca
     1021 caagaagtga aagacttgct tccatcaggc tttgatacga agtttgacga aacagttgag
     1081 cctaagcaac caactgagac tacagttaag gttagcgatg gcacatggac gttcacgaaa
     1141 tacgatgcag acagcaaagt tgtagacgaa gcagaagaga aattcgtagg tacctggacg
     1201 ttcacaccgt cagaaactcc ggaagaaaaa ccagccaagg ttgttcatga gtttgtcagc
     1261 ggtactccag gtaaagagct tccacaagaa gtgaaagacc tgcttccatc aggctttgat
     1321 acgaagtttg acgaaacagt cgagcctaag caaccaactg agactacagt tgaggttagc
     1381 gatggcacat ggacgttcac ggaatacgat gcagacagca aagttgtaga cgaagcagaa
     1441 gagaaattcg taggtacctg gacgttcata ccgtcaacag acggaggcac caccccgcca
     1501 acggacggag gagtaaatcc gccaacagat ggaggcacca ccccaccgac ggacggagga
     1561 gttaatccgc cgatagacgg aggcaccacc ccaccgacag acggaggagt taatccgccg
     1621 acggacggag gcaccacccc accaacggac ggaggcacca ccccaactcc accgactggt
     1681 acaatcactg ttacaccaaa agcaggcact acacagttgc caaatactgg tgaagccagc
     1741 accagtcctc tatatggagt actagccttt gctacaggtc tagcaggact ctttggtttg
     1801 aaaaagaaga agaccagtag tacataatga ctagtcttct acgggcttgt cagcatgctt
     1861 gaccctcgag atttcatatc ttgagggtct ttgtatattg taagtaacgt aaccgccca
//
LOCUS       DASGAC010000244         1865 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.246, whole genome shotgun sequence.
ACCESSION   DASGAC010000244 DASGAC010000000
VERSION     DASGAC010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1865)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1865)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.246"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            99..362
                     /locus_tag="U1335_002103"
     CDS             99..362
                     /locus_tag="U1335_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001196070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5232527.1"
                     /translation="MQVILPDEQIKQIQILISSLITSEIEKQIHHRNIGNSYLNKKQA
                     CEYLGISNNTLDEWIRKGLPSIKIGKTVRFNKQSIDAWLLAQN"
     gene            428..1645
                     /locus_tag="U1335_002104"
     CDS             428..1645
                     /locus_tag="U1335_002104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014621054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5232528.1"
                     /translation="MTITKTKNGTYRLKVYIPTEVRMPLGIVNNNYFDKRFKTKKEAR
                     QAEIDLLTKINQIENNEFTGIGKGEILFKDFYENIWWEYYKAGQTTSTTRPPSKSTVA
                     NTKTCFRKHILPMLGNYTIQFLNQNKQVILNLMTAKASEYANFKTLRSYVISIFDWAE
                     ELEYIESNKIAKTLRRIKSTKKIQLAEARRDEDLYLTHEQLQEWFSAFQDDLASGKIS
                     LKDYVLFYLTFFLGDRKSESYALQWKHIDFEKSQIQLIQALDRYGDTKATKGNKKTIF
                     AISADLLQLLQSWKKQQRQELAKFGIITNPEQFVFTYIDTKGNINKPLHADYLNNKMR
                     TVKNRHPHLTHATPHKLRHTGATLAKQAGMSLEAISEALTHSDSTTTQIYVNTSNVIP
                     MAVGEFALNSLKL"
BASE COUNT          716 a          343 c          297 g          509 t
ORIGIN      
        1 agtcgattaa tctatacatt tctaaaaatc atccgttttg agtccgcatt gtggcataat
       61 gactaatgtc aaatttaaat aataggaaga gggtaaacat gcaagttatc ttacctgatg
      121 aacaaatcaa acaaattcag atattaattt caagtttaat tacatcagaa attgaaaaac
      181 aaattcatca tcgaaatatt ggcaattcgt atttaaacaa aaaacaagca tgcgagtatc
      241 tcgggatttc aaataatact ttagacgaat ggattcgcaa agggcttcca tctattaaga
      301 tcggaaaaac agttcgtttc aacaaacaat ctattgatgc atggctactt gcacaaaact
      361 agaaatatct gtatttttat cttataatta gcatggtatt ttctggttcg acaaaaagga
      421 gaatatcatg actatcacaa aaacaaaaaa tggaacatat cgcttaaagg tatatattcc
      481 aactgaagta cgaatgcctc tcggaatcgt gaacaataat tactttgata agcgttttaa
      541 gacaaaaaag gaggcacggc aagcagagat agacctttta acaaaaatca atcagattga
      601 gaacaacgag tttacaggga taggtaaggg agaaatccta tttaaagatt tttacgaaaa
      661 tatttggtgg gaatattaca aagcaggaca gacaacttca accacaagac cacctagtaa
      721 atctacagtg gctaatacaa aaacttgttt cagaaaacat attttaccta tgttaggtaa
      781 ttatactatt caatttctca atcagaacaa gcaggttatt ctaaatttaa tgacagcaaa
      841 agccagtgaa tatgcaaact tcaaaacttt acgcagctat gtcatatcca tctttgattg
      901 ggcagaagaa ttagagtaca tagaatcaaa taaaatcgct aaaaccctac gtcgtatcaa
      961 atcaactaag aaaatccagt tggcagaagc taggcgagat gaagacctct acctaacaca
     1021 tgagcagtta caggaatggt tctcagcctt ccaagatgat ttggctagcg gaaaaatttc
     1081 acttaaggac tacgttctat tttatcttac cttcttttta ggagacagaa aatctgaatc
     1141 atatgctttg caatggaaac acattgactt tgaaaaatct caaattcagt taatccaggc
     1201 actagacaga tatggtgata caaaagcaac caaaggaaac aaaaaaacaa tctttgctat
     1261 ttcagctgac ttgctccaac ttctccagag ttggaaaaaa caacaaaggc aagaacttgc
     1321 aaagtttgga atcattacaa atcctgaaca gttcgtcttc acttatatag ataccaaagg
     1381 aaatatcaat aaacctctac acgctgatta tcttaacaat aagatgcgaa cagttaaaaa
     1441 tcgtcaccca catttgacac acgccacacc tcataaactc cgacacacag gtgcaacact
     1501 tgctaaacaa gcaggtatga gcttagaagc tatttcagag gctctaaccc acagcgatag
     1561 cactacaact caaatttatg tcaatacttc taatgtcatt ccaatggcag tcggagaatt
     1621 tgccttaaac tctctgaaac tataaggtaa aaataaggta aattttgagg tgaacttttc
     1681 aaaaaaacac gaaaaaagca cccatgaggt aaactcttga gtgctttgaa acgttgatat
     1741 aatcgtattg attaacgttt tgagaatttc tctattgaaa acgaagaatt ctcacccctt
     1801 acaaatcccg ttatatcaac atttacgaaa atgaaacttc catgaaaatg gactaaaatt
     1861 cactg
//
LOCUS       DASGAC010000245         1844 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.247, whole genome shotgun sequence.
ACCESSION   DASGAC010000245 DASGAC010000000
VERSION     DASGAC010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1844)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1844)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1844
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.247"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            16..711
                     /locus_tag="U1335_002105"
     CDS             16..711
                     /locus_tag="U1335_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantothenate--cysteine ligase"
                     /protein_id="HEM5232529.1"
                     /translation="MKLLITSGGTSEAIDQVRAITNHASGNLGKIIAEQALKRGHEVT
                     LVTTRQAVKPDSQMNLTIIEITNVDSLKETLEPLVNTHQALIHSMAVSDYTPVYMAGL
                     DEIRATEDISSLLKKQSTESKISSKDDYQVLFLKKTPKVISYVKKWNPAITLFGFKLL
                     VNVPKEELFAVARQSIERNGADYILANDLKDIGENQHIAYLVDKTREIQAQTKDEIAQ
                     LILNTLEKGEQNG"
     gene            704..1252
                     /gene="coaC"
                     /locus_tag="U1335_002106"
     CDS             704..1252
                     /gene="coaC"
                     /locus_tag="U1335_002106"
                     /EC_number="4.1.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantothenoylcysteine decarboxylase"
                     /protein_id="HEM5232530.1"
                     /translation="MANITLAVTGSISAYKAADLTSQLTKLGHQVTVLMSRSAMDFIT
                     PLTLQSLSKNLVHTDVMIEENPTLIKHIDIAKETDVFLVAPASANTIAKLANGMADNI
                     ITATALALPIGTKKLLAPAMNTNMYLNPATKKNIKTLMEYGFEEIKPREALLACGDFG
                     TGALAEVTDILEKVSNTLDEKK"
     gene            1239..1808
                     /locus_tag="U1335_002107"
     CDS             1239..1808
                     /locus_tag="U1335_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013730330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM5232531.1"
                     /translation="MKKNKSTQIATIAIFFAVMIVINILSSIIFNILPVPIKPTIVHI
                     PVIIASIIYGPRVGACLGALMGLMSMTHNTIILLPTSYLFSPFVENGNVYSIIIAVVP
                     RILVGITPYFVYKWIKNRKGLFIAGAIGSMTNTIFVLGGIFFLFSSVFDGNIQAMLAT
                     VLGTNSIAEMIISSVLTAALVPTLQKIQK"
BASE COUNT          595 a          369 c          321 g          559 t
ORIGIN      
        1 tagtaaaata tgaacatgaa actattgatt acatcaggcg gaacaagcga agctatcgat
       61 caagtccgcg ctattacaaa ccatgcttct ggaaatcttg gaaaaatcat tgccgaacaa
      121 gccttgaaac gcggtcatga agttactctt gtgactacaa gacaggctgt taaaccagat
      181 tctcagatga atttaacaat tatcgaaatc acaaatgttg atagtttgaa agaaacatta
      241 gaacctttgg tcaatacaca ccaggctctc atccatagca tggctgtatc cgattataca
      301 cctgtttata tggctggttt agatgaaata agagcaactg aagacatttc tagtctacta
      361 aaaaaacaga gtacagaaag taagatttca tccaaggatg actaccaagt tcttttcttg
      421 aaaaaaactc ccaaggtcat ttcctatgta aaaaaatgga atccagctat cacactcttt
      481 ggcttcaaac tattggttaa tgttcctaaa gaggaattat ttgccgtagc tcgccaaagc
      541 attgaacgaa atggcgctga ttatatactt gctaatgact tgaaggatat tggagaaaat
      601 caacacattg cctatttagt tgataaaaca agggagattc aagcacagac aaaagatgaa
      661 attgctcagc tcattttaaa taccctagaa aaaggagaac aaaatggcta atatcacact
      721 tgccgttact ggctctattt cagcctacaa agcagctgac ctaactagtc aattgaccaa
      781 gctcggtcat caggtcacag tcctcatgag tcgctctgct atggacttca tcacaccatt
      841 gactctccaa tccttgtcaa aaaatctggt tcacacagat gtcatgattg aagaaaatcc
      901 tactcttatc aagcatatcg atattgccaa agaaacagac gtatttttag ttgcccctgc
      961 ttctgccaat acgatagcta aattagctaa tggtatggct gacaacatta ttacggcaac
     1021 agctctggct ctgccaattg gtactaaaaa actgctggca cctgctatga atactaacat
     1081 gtacctcaat cctgctacca agaaaaatat caaaaccctc atggagtatg gttttgagga
     1141 aatcaaaccg cgtgaagccc tgcttgcttg tggagatttt ggaactgggg ccttggctga
     1201 ggtaactgat attttagaga aagtgagtaa cacccttgat gaaaaaaaat aaatcaactc
     1261 aaattgctac aattgcaatc ttctttgctg tcatgattgt catcaatata ttgagttcaa
     1321 ttatttttaa tatattgcct gttccaataa aacccaccat cgtacatatc ccagtcatta
     1381 ttgcttctat tatatacggg ccacgtgttg gggcttgttt gggggctctc atgggcttaa
     1441 tgagtatgac ccataatact attatcttac taccaaccag ctatcttttc tccccatttg
     1501 ttgaaaatgg taatgtttat tcaatcatca ttgcagttgt cccacgtata ttagtcggga
     1561 ttacacctta tttcgtctac aaatggataa aaaatcgtaa aggattattt attgctggtg
     1621 caattggttc aatgaccaat actatttttg tacttggagg tattttcttc ctcttctcct
     1681 ctgtctttga tggtaatatt caagcaatgt tagcaaccgt tttaggtacc aattcaattg
     1741 cagaaatgat catttcttct gtattaactg cagcgcttgt tccaacttta cagaaaattc
     1801 aaaaataaat atcagaaaat catgtgaaag cgtgattttt cttt
//
LOCUS       DASGAC010000246         1821 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.248, whole genome shotgun sequence.
ACCESSION   DASGAC010000246 DASGAC010000000
VERSION     DASGAC010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.248"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            35..823
                     /gene="codY"
                     /locus_tag="U1335_002108"
     CDS             35..823
                     /gene="codY"
                     /locus_tag="U1335_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016399190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-sensing pleiotropic transcriptional
                     regulator CodY"
                     /protein_id="HEM5232532.1"
                     /translation="MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSC
                     IINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYVKAVAQVYDTQVNLPVESELTAI
                     PVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNNEQFHDDDLILVEIAATVVGIQLLN
                     FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITR
                     SVIVNALRKLESAGIIESRSLGMKGTYLKVLIPAIFDEIKKRDY"
     gene            825..1376
                     /locus_tag="U1335_002109"
     CDS             825..1376
                     /locus_tag="U1335_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002268947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HEM5232533.1"
                     /translation="MTKALISIDYTIDFVADEGKLTAGKSAQAISERIAQVTQEAFEN
                     GDYIFFAIDGHEEGDEFHPEAQLFPSHNIIGTQGRDLYGPLADFYQKHKGHARVRWMD
                     KRHYSAFSGTDLDVRLRERGVDTVVLTGVLSDICVLHTAIDAYNKGYRIEVVSSAIAA
                     LTEENHQFALNHLRHVLGATIID"
BASE COUNT          521 a          316 c          441 g          543 t
ORIGIN      
        1 atactgaaag caattacaga gtaaagagga aaatatgaca acattattag agaagacacg
       61 gaatatcact tctattttga agcgttccga agagcaattg gcagaagaat tgccttataa
      121 tgccattgct gagcatttat cagctattat tgactgcaac tcgtgcatca ttaatagtga
      181 aggtgaagtt ttgggatacc acatgaacta tgagacgaac aatgatcgtg tggaagaatt
      241 tttccaaaac aaacaattcc cagaaggata tgtaaaagca gttgcgcagg tttacgatac
      301 gcaggttaat ttgcctgtcg agagcgagtt gactgccatc cctgtcgaat cacgatcgac
      361 ttatccaaac gggctgacaa cgatagcgcc tatccacgta acggggattc gttttggttc
      421 gcttattatt tggcggaata atgagcagtt tcacgatgat gatttgattt tggttgagat
      481 tgcggcaaca gtagttggta ttcagttact taatttccaa cgggaagaag acgagaagaa
      541 tatccgtcgt cgtgcggcag ttaatatggc agtaaatacg ctatcttact cagaaatgaa
      601 ggcagttgca gctattttgg gtgaattgga tggcaatgaa gggcaattga ctgcttctgt
      661 gattgcagat cgtatcggta ttacacgctc ggtgattgtg aatgcactgc gtaagttgga
      721 gagtgcaggg attattgaaa gtcgttcttt gggaatgaag gggacttatt tgaaagttct
      781 catcccagct atttttgatg aaattaagaa acgtgactac taaaatgaca aaagcattga
      841 tttcgattga ttatacaata gattttgtgg cagatgaagg aaagttgact gctggaaaat
      901 cagctcaggc tatttctgaa cgaattgctc aggttacgca agaagctttt gaaaatgggg
      961 actatatttt ctttgcgatt gatggtcatg aggaggggga tgaatttcat cctgaagctc
     1021 agcttttccc aagtcataat atcattggga cgcaagggcg tgacttgtat ggtcctttag
     1081 cagattttta tcaaaaacat aaagggcatg cgcgtgttcg ttggatggat aaacgtcatt
     1141 attctgcttt ttctgggacg gatttggatg ttcgactaag agaacgtggt gtagatacgg
     1201 ttgtcttgac gggggttttg tctgatattt gtgttcttca tacagctatt gatgcttata
     1261 ataaggggta tcgtattgag gtggtctcat cagccattgc tgcattgacg gaggagaatc
     1321 atcagtttgc tcttaaccat ttgcgtcatg tactcggtgc gacaattatt gattaatagt
     1381 atagtgggga gtgggaaaga actcgaccga acaaaaaaga gttcgtcaac aagtctttat
     1441 ttctatttgt tgagctgaaa cagtctattc ccagactgtt tcactcccac ccccgtacag
     1501 ctcaaactgt ctgggagaca gtttgaggtt ggagatgaag cgaactttgt tcgcaacagt
     1561 cgtaatggtc agatttggag tgtgaaacac gaattgctga gatttgcttc gcaaatctta
     1621 tctccaacct ttaacagtcc actggactgt taaacccaat caaccactgc gctgagatgt
     1681 tgacacgaac tctgagaagt ggcgctgggc ttgagctcag cctcttttcg tttttctcca
     1741 acaggaatgt attattaaca ctcttcgaaa atcaaactca gaccttgttg acttaacttg
     1801 taaaagaagc ggtgtgattg a
//
LOCUS       DASGAC010000247         1808 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.249, whole genome shotgun sequence.
ACCESSION   DASGAC010000247 DASGAC010000000
VERSION     DASGAC010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1808)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1808)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.249"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            72..1301
                     /locus_tag="U1335_002110"
     CDS             72..1301
                     /locus_tag="U1335_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase"
                     /protein_id="HEM5232534.1"
                     /translation="MRKVSRGVLTILLSATVLSACSGGGQELSERLEAVKIEFSKEKK
                     QLEAELTALKEEVQGNFYYQQLDTDKERRVYLQFVNGLSKRMQVIDIDSVNDEIYSRV
                     YFSVAHDYPEFYWLTDEAAMSGGVDILDLEEPAYPTDLSPTRNKIEEEVNKILAQAPT
                     GSDYEKVKYFYEVIIKQTDYDLEALQTNSVTWRSQGITSVLLDKKSVCAGYSRTFQYL
                     CKKAGIDCIYVTGIAKNGQNGEFGHAWNLVKINGQYYGVDTTWGDPVFDQAISGEAHT
                     DISYDYLCVPDEILERSRIADTDLLDYWGEEQYYEPRALTYPKCTDNSLNYYVQKGVY
                     FTSFDEAAVLQSITDQRLQGTDKVVLQFGTAEAMQQMITLASTENNAIFQALGDVGEY
                     QYYYNDQTYTFELADWF"
     gene            complement(1555..1803)
                     /locus_tag="U1335_002111"
     CDS             complement(1555..1803)
                     /locus_tag="U1335_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018368578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEM5232535.1"
                     /translation="MEVKPLANIKSAIKRAELNVKQNEKNSAQKSAMRTAIKAFEANP
                     SEELFRAASSAIDKAETKGLIHKNKASRDKARLASKLA"
BASE COUNT          571 a          309 c          395 g          533 t
ORIGIN      
        1 agtctaattt tttgtgtagt tcgtcagaag cctcctaatt atgttatact taaacaagaa
       61 tggaggtaaa tatgaggaaa gtttctcgtg gcgttttaac catattatta tcggcgacag
      121 tcctttctgc ttgttcagga ggaggacaag agctgagtga acgtttggaa gcagttaaaa
      181 ttgaattttc taaagaaaaa aagcaactag aagcagaatt aacagcatta aaagaagagg
      241 ttcaaggaaa tttctactac caacaattgg atactgataa ggaacgtcgt gtctatctcc
      301 aatttgttaa tgggctcagc aagcggatgc aagtgatcga tattgattct gttaatgatg
      361 aaatatattc gcgcgtctat ttttctgtcg ctcatgatta tccagaattt tactggctaa
      421 cagatgaagc ggcaatgagt ggcggagttg atatattgga tttagaagag ccagcgtatc
      481 cgactgattt atctcctaca cgaaataaaa tagaagagga agtgaataaa atacttgctc
      541 aggcaccaac agggtcggac tatgagaagg ttaaatattt ttacgaggtg attataaagc
      601 aaacggatta cgaccttgaa gccctacaaa ccaactctgt cacgtggaga agccaaggaa
      661 ttaccagtgt gctattagat aagaaatccg tttgtgcggg ctatagtcgc accttccaat
      721 atctatgtaa aaaagcaggc attgattgta tctatgtcac agggattgca aaaaatgggc
      781 aaaacggtga gtttgggcat gcttggaatc tagtcaagat aaatggacaa tactatggtg
      841 tcgatacgac ttggggagat ccagtttttg atcaagctat aagtggagaa gcgcatacag
      901 atatttcata cgattatcta tgtgtccctg atgaaatatt agagagaagt agaattgctg
      961 ataccgacct actcgactac tggggagaag aacaatatta cgaacctaga gcattgacct
     1021 atccaaagtg tacagataat tcattgaatt actatgttca aaagggagtt tatttcacaa
     1081 gctttgatga agctgcagtt ttacagtcca tcactgatca gcgactacaa ggtacggata
     1141 aagtagtctt gcaattcgga acagccgaag caatgcaaca aatgattaca ttggcctcta
     1201 ctgaaaataa tgctattttt caggccttgg gcgatgtagg agagtatcag tactattata
     1261 atgaccaaac ctatacattt gaactggcag attggttcta acgaattagt ttgaatctct
     1321 aggagcgtgt tcttcactaa taataaaaaa tagggagcgg gaaagacatc catgatggct
     1381 ccgccctcac ccacagaata atgaaaacaa acataaagcc ctcactaggt gtataatctt
     1441 agtgagggct ttgtggttga cgagttaatg atgttattca tcgaggggaa aactgttcca
     1501 ctttgtccga tggaaaaaat aaaaaaaaag gaaacccaaa ggtttctttt tttattaagc
     1561 aagttttgat gcaagacgtg ctttatcgcg gcttgctttg tttttgtgaa tcaaaccttt
     1621 agtttctgct ttatcgattg ctgaactagc agcacggaaa agctcttcag atgggttagc
     1681 ttcaaatgct ttgattgcag tacgcatagc tgatttttgt gctgagtttt tctcgttttg
     1741 tttaacgttc aattcagcgc gtttgatagc tgacttaatg tttgccaatg gtttcacctc
     1801 cacccttt
//
LOCUS       DASGAC010000248         1801 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.250, whole genome shotgun sequence.
ACCESSION   DASGAC010000248 DASGAC010000000
VERSION     DASGAC010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1801)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1801)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1801
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.250"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..519
                     /locus_tag="U1335_002112"
     CDS             <1..519
                     /locus_tag="U1335_002112"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232536.1"
                     /translation="IKEIDGAFKNFNREVQKSLENHLEYKSEQFNYVFNRFERPIIGV
                     KLADDEIKLLGSDFFVQSEFTYSNSRFLETNLIKQNSPLEMTLTMSLLILPSILIILR
                     EKWILMIAQNKNGELDQEILNLEKEIKKMEAKSQQEGLSINSPSQLPDSLLNSVNKKG
                     RQVFDELDVEVI"
     gene            533..>1801
                     /gene="purB"
                     /locus_tag="U1335_002113"
     CDS             533..>1801
                     /gene="purB"
                     /locus_tag="U1335_002113"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEM5232537.1"
                     /translation="MINRYSRPEMAAIWSEENKYKAWLEVEILADEAWAELGEIPKAD
                     VALIREKASFDIDRILEIEEETRHDVVAFTRAVSESLGEERKWVHYGLTSTDVVDTAY
                     GYLYKQANDIIRRDLENFTNIIADKAREHKYTIMMGRTHGVHAEPTTFGLKLATWYSE
                     MKRNMERFDVAAKGIEAGKISGAVGNFANIPPFVEEYVCGKLGIRPQEISTQVLPRDL
                     HAEYFSALALIATSIERMATEIRGLQKSEQREVEEYFAKGQKGSSAMPHKRNPIGSEN
                     MTGLARVVRGHLVTAFENVALWHERDISHSSAERIITPDTTILINYMLNRFGNIVKNL
                     TVFPENMKRNMESTFGLIYSQRVMLSLIEKGMTREEAYDLVQPKTAQSWDNQVDFKPL
                     LEADERVTAKLSQEEIDELFNPDYYAKRVDD"
BASE COUNT          526 a          373 c          441 g          461 t
ORIGIN      
        1 atcaaagaga ttgatggtgc attcaaaaat ttcaatagag aagttcagaa gtcactggaa
       61 aatcatttag agtataaatc tgaacagttt aactatgttt ttaacaggtt tgaacgtccg
      121 attattggtg ttaaactagc tgatgacgag ataaaactat tagggagtga cttctttgtg
      181 cagtctgaat ttacttattc aaatagtcgt tttctggaaa caaatctaat caaacaaaac
      241 agcccattgg agatgacatt aacaatgtca ctacttattc taccaagtat tctgattatt
      301 ctaagggaga aatggattct tatgatagct caaaataaga atggagaact agatcaagag
      361 atactaaatc tagagaaaga aatcaagaag atggaggcta aaagtcaaca agaggggctt
      421 tctataaatt ccccctctca attacctgat agcctactta actctgttaa caaaaaaggc
      481 aggcaggtct ttgatgaatt agatgttgaa gtaatataag gggtaaatca aaatgatcaa
      541 tcgttattcc cgcccggaga tggcggctat ttggagtgaa gagaacaagt acaaggcttg
      601 gttggaggtg gaaatccttg ccgatgaggc ttgggctgag ttgggtgaga ttcccaaggc
      661 tgatgtggcc ttgattcgtg agaaggcgag ctttgacatc gaccgcattt tagagattga
      721 agaggagacc cgtcacgatg tggtggcttt cacacgtgcg gtttcggaaa gtcttggcga
      781 ggagcgcaag tgggtccact atggtctgac ctcgaccgac gtggtggata cggcttacgg
      841 ctacctctac aagcaggcca acgacattat ccgtcgcgac cttgaaaact ttaccaatat
      901 catcgctgac aaggcgcgtg agcacaagta caccatcatg atggggcgga cccacggtgt
      961 tcatgcagaa ccaacgacct tcggtctaaa actcgcgact tggtatagcg aaatgaaacg
     1021 caacatggag cgttttgatg tggcagctaa gggcattgag gctggtaaaa tttcaggtgc
     1081 ggttggaaac tttgccaaca ttcctccatt tgtggaagag tatgtttgtg gcaaattggg
     1141 cattcgtcca caggaaattt cgactcaggt ccttcctcgt gaccttcacg cagaatattt
     1201 ctcagcccta gccttgatcg caacgtctat cgagcgtatg gcgacagaga tccgtgggct
     1261 acaaaaatct gaacaacgtg aagtcgaaga gtatttcgcc aaaggccaaa aaggcagctc
     1321 tgctatgccc cataaacgca accctatcgg ctctgaaaat atgaccggtc tggctcgcgt
     1381 ggtgcgtggt cacttggtga cggcttttga aaatgtggct ctctggcacg aacgcgatat
     1441 ttcccactcg tcagcggagc ggattattac gccggatacg accattctta tcaactatat
     1501 gctcaatcgt tttggcaata tcgtcaagaa cttgacggtc ttccctgaaa atatgaaacg
     1561 caatatggag tcgacttttg gcttgattta cagccagcgt gtcatgctta gcttgattga
     1621 aaaaggtatg acccgtgagg aagcctatga tttggtgcaa ccaaaaactg cgcagtcttg
     1681 ggacaaccaa gtggacttca agccccttct cgaagcggat gagcgtgtga ctgccaaact
     1741 cagccaggaa gaaatcgatg aactcttcaa ccccgactac tatgctaagc gggtggatga
     1801 c
//
LOCUS       DASGAC010000249         1799 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.251, whole genome shotgun sequence.
ACCESSION   DASGAC010000249 DASGAC010000000
VERSION     DASGAC010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1799)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1799)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1799
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.251"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(9..1238)
                     /locus_tag="U1335_002114"
     CDS             complement(9..1238)
                     /locus_tag="U1335_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006148974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEM5232538.1"
                     /translation="MTKRQNIPFSPPDITQAEIDEVIDTLKSGWITTGPKTKELERRL
                     SVFTGTNKTVCLNSATAGLELVLRVLGVGPGDEVVVPAMTYTASCSVITHVGATPVMV
                     DIQKDSFEMDYDALEKAITPKTKVIIPVDLAGIPCDYDKIYTIVENKRSLYVASDNKW
                     QKLFGRVIILSDSAHSLGASYKGKPAGSLADFTSFSFHAVKNFTTAEGGSVTWKVRPD
                     LDDEEMYKEFQIYSLHGQTKDALAKTQLGSWEYDIVIPGYKCNMTDIMAGIGLVQLER
                     YPSLLNRRREIIEKYNAGFEGTSIKPLVHLTEDKQSSMHLYITHLEGFTLEQRNEVIQ
                     KMAEAGIACNVHYKPLPLLTAYKNLGFEMKDFPNAYQYFENEITLPLHTNLSDEDVEY
                     IVHTIVNIISNFESGKH"
     gene            complement(1248..>1799)
                     /locus_tag="U1335_002115"
     CDS             complement(1248..>1799)
                     /locus_tag="U1335_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEM5232539.1"
                     /translation="LSPVIIALSIWIKLDSKGPVFYRQERVTRYGRIFRIFKFRTMIS
                     DADKVGSLVTVGQDNRITKVGHIIRKYRLDELPQLFNVLTGDMSFVGVRPEVQKYVDQ
                     YTDEMLATLLLPAGITSPASIAYKDEDIVLEKYCSQGYSPDEAYVQKVLPEKMKYNLE
                     YIRNFGIISDFKVMIDTVLKVIK"
BASE COUNT          551 a          377 c          289 g          582 t
ORIGIN      
        1 tttttctttc aatgtttgcc actttcaaaa ttagaaataa tattaacaat tgtatgcaca
       61 atgtactcca catcttcatc actcaagttg gtatgaagcg gtagtgtaat ttcattttca
      121 aaatactgat aggcattcgg aaaatctttc atttcaaaac caagattctt gtaggctgtg
      181 agaagaggta atggtttgta gtgaacattg caagcaatcc ctgcttcagc cattttttga
      241 atgacttcat ttcgttgttc caaagtaaag ccttccagat gcgtgatata caagtgcata
      301 gacgattgtt tatcttccgt caggtgtacc aacggcttaa tcgaagtccc ctcaaagcca
      361 gcattgtatt tctcaataat ttctctgcga cgattcaaca aagatgggta acgttctaat
      421 tgcacaagac caatacctgc cataatatct gtcatattac acttgtaacc aggaatgaca
      481 atgtcatatt cccatgaacc taattgtgtc ttagctagag catcctttgt ctgaccatga
      541 agagagtaaa tctgaaactc cttatacatc tcttcatcat ccaaatcagg acgtactttc
      601 catgtcacac ttccaccttc agcagttgta aaattcttta ccgcatggaa agaaaatgag
      661 gtaaaatctg ctagggaacc cgctggtttc cccttataac tagcacctag tgagtgtgca
      721 ctatcagata aaataataac tcgtccaaaa agtttctgcc atttattatc agaagcaaca
      781 tacaatgagc gtttgttttc tacaattgtg taaattttat cataatcaca aggaatacca
      841 gccagatcaa caggaatgat aacttttgtt ttcggagtaa tcgctttttc caaagcatca
      901 taatccattt caaagctatc tttttgaata tcaaccatca caggtgtggc acctacatgg
      961 gtaatgacac tacatgaggc tgtataggtc atggcaggaa cgacaacttc gtcccccggt
     1021 ccaactccaa gaactcgtaa gactagttct aatccagcag tagcagagtt taagcacacc
     1081 gttttattgg ttcctgtaaa tacggataac cgacgttcta actcttttgt ctttggtccc
     1141 gttgtaatcc agccagattt tagtgtgtca ataacttcat caatttcagc ttgggtaata
     1201 tctggtggcg aaaacggaat attttgtctc tttgtcatat caatctccta ttttatcact
     1261 tttaatactg tatcaatcat tactttaaaa tcagaaataa ttccaaagtt tctgatatat
     1321 tccaaattgt atttcatttt ttctggtaac actttttgaa cataggcttc atctggacta
     1381 tagccctgag aacaatattt ttccaaaaca atgtcttcat ccttatatgc tatacttgct
     1441 ggtgaagtaa ttccggcagg taaaagtaag gttgcaagca tctcatcagt gtactgatct
     1501 acgtattttt gcacttctgg tctcacacca acaaagctca tatcaccagt caaaacatta
     1561 aacagttgag gtagttcatc caacctatat tttctaataa tatgaccgac tttcgtaata
     1621 cgattatctt gaccgactgt gacaagactt ccgactttat ccgcatcaga aatcatcgtt
     1681 ctaaacttaa atattctaaa aattcgacca tatcttgtaa ctctttcttg acggtaaaaa
     1741 acgggtccct tactgtctag ttttatccaa atagataaag caatgatgac tggcgaaag
//
LOCUS       DASGAC010000250         1797 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.252, whole genome shotgun sequence.
ACCESSION   DASGAC010000250 DASGAC010000000
VERSION     DASGAC010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1797
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.252"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            257..1222
                     /locus_tag="U1335_002116"
     CDS             257..1222
                     /locus_tag="U1335_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013903623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5232540.1"
                     /translation="MPRKKNSLKHDIFVKATKNVTNNTSRTSYKRSATRFSKWAKENN
                     IKKISDISEEILQAYHDDLKNDPKQYTPATIHTYLAPICKAAGINLSRIRKQKRTSDK
                     IIRGRQQEANAQGKKQELNSRFSRLLNFQKVVGIRRNELKHLTGSDFKEDEYGNCYIL
                     VKRGKGGKKQMQYILPKNIELVKQTFSGIEANEPVFTEEEMNNQINLHALRAQHARDS
                     YFYYLNRIQQNPKIKQALKNLLITRWEEGHQKLKKESQSKYERQRRNFIYELRDETYL
                     LRGHNKNKAIASGMPIVYNRLALMAVSVLNLSHWRLSVTVTNYIL"
     gene            1288..>1797
                     /locus_tag="U1335_002117"
     CDS             1288..>1797
                     /locus_tag="U1335_002117"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232541.1"
                     /translation="MRNQNNLRNKEQNVLFARGKIIEVNNDDNKPSFILFIRNGGGRR
                     HTFLTFRYDVSKIVPIEGTNVYIEGHLNNIFDSTRYKSQYYVADYLKLEQTEITNHFN
                     LSESNGFAFPKHFAKFFVYGTVIHKSSRINSIWIELIVKDKYNNEVKLQYSKKMRVSD
                     IKFKVGDKVY"
BASE COUNT          714 a          295 c          308 g          480 t
ORIGIN      
        1 ttatcaagaa taatagtaca gaaaaaagtg tttaacaata gtatatagaa gtttaaattt
       61 ttaagaaata atcagttcaa tgacgtaacg aagatttcag agatattcaa cggtgctaca
      121 gaagaatatc gaaaacgtca gtccagcagg acagcctcgt cgggaatttt cgggagcata
      181 cccagctcat tctacaaaaa aagggtggga ggcagtttac cagtaatatg cattttaaaa
      241 tagaaaggag aaagaaatgc cacgaaagaa aaattcatta aaacacgata tctttgtaaa
      301 agcaacaaaa aatgttacaa acaatacatc tcggacttca tacaaaagat ctgcaacacg
      361 attctctaaa tgggcaaaag aaaataacat caaaaaaatc tcggacatct cagaagagat
      421 tcttcaagca tatcacgacg atttaaaaaa tgatccaaag cagtacaccc cagcgacaat
      481 ccatacctac cttgcgccaa tttgtaaagc agcaggaatt aatttaagcc gaattcgaaa
      541 gcaaaaaagg acaagcgata aaatcatacg aggacgacaa caagaggcaa atgcacaagg
      601 gaaaaaacaa gaattgaact ctcgcttctc tcgcctttta aactttcaga aagtcgttgg
      661 aattcgtcgt aacgaactca aacatcttac tggttcagat tttaaagaag atgaatatgg
      721 taattgttat atcctcgtta aacgcggcaa gggaggcaag aaacaaatgc aatacatctt
      781 gccaaaaaat atcgaactcg tgaaacaaac attttctggt attgaagcca acgaacctgt
      841 cttcacagaa gaagagatga acaatcaaat caatttacat gccctacgcg cacaacatgc
      901 acgtgatagc tacttttatt atctaaatag aattcaacag aatcctaaaa ttaagcaagc
      961 attaaagaac ttgttgatta cacgttggga agaaggacat cagaaattga aaaaggaatc
     1021 acaaagcaaa tacgaaagac agcgtagaaa cttcatatat gaattacgtg acgaaacata
     1081 ccttcttaga ggtcataata aaaacaaggc tattgcatca ggaatgccaa ttgtttacaa
     1141 tcgattggct ctgatggctg tatcagtact taatttgtct cattggcgct tatctgtaac
     1201 agtaacgaat tatattttat aaattttttg aatcgtaaat tcaggcatac taattatgta
     1261 gaaaattgat taaatggagg ataaaatatg aggaatcaaa ataatctacg aaacaaagaa
     1321 cagaatgtac ttttcgctag aggaaaaatt attgaagtaa ataatgatga taataagcca
     1381 tcgttcattc tctttattag aaatggtggc ggccgaagac atacattttt aacctttaga
     1441 tatgatgtat ctaaaatagt tccaatagaa ggcacaaacg tctacataga aggtcattta
     1501 aataatattt ttgactctac tagatataaa agccagtatt atgttgctga ttatcttaaa
     1561 ttagaacaaa cggagataac taaccacttt aatctttcag agtctaacgg atttgcattt
     1621 ccaaaacact ttgcgaaatt ttttgtttat ggaactgtta tacacaagtc atctcgtatc
     1681 aattcaattt ggattgaact tattgttaaa gataagtaca ataatgaagt caaacttcag
     1741 tacagcaaaa aaatgagagt cagtgacata aaatttaagg ttggtgacaa agtatat
//
LOCUS       DASGAC010000251         1779 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.253, whole genome shotgun sequence.
ACCESSION   DASGAC010000251 DASGAC010000000
VERSION     DASGAC010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.253"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..438)
                     /locus_tag="U1335_002118"
     CDS             complement(<1..438)
                     /locus_tag="U1335_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5232542.1"
                     /translation="MLSKYVGRLTSSIENDITKTRNHSRQRGNIMRAVFGIDVSKASS
                     EVAILVNGEKVHGYTMSNDALGFARLLGDLRTVHKPEIIFEATGVYSRRLQTFLEDNG
                     YAYTRLNPLEAKKQLDSLRVRKTDQIDAEKLAQSQFVLNRKPTY"
     gene            complement(708..>1779)
                     /gene="ugpC"
                     /locus_tag="U1335_002119"
     CDS             complement(708..>1779)
                     /gene="ugpC"
                     /locus_tag="U1335_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HEM5232543.1"
                     /translation="VENFNLDIKDKEFIVFVGPSGCGKSTTLRMIAGLEDITEGEAYI
                     DGVLMNDVAPKDRDIAMVFQNYALYPHMTVFDNMAFGLKLRKYSKDEIKKRVEEAAQV
                     LGLTEFLQRKPADLSGGQRQRVAMGRAIVRDAKVFLMDEPLSNLDAKLRVSMRTEIAK
                     IHRRIGATTIYVTHDQTEAMTLADRIVIMSATKNEAGTGTIGRIEQIGSPEELYNKPV
                     NKFVASFIGSPAMNFFTVTLQEGVLVGDGFKVDLPEGRRKHLEEKGYNGKSFTLGIRP
                     EDIKASQLELDTYPSSIIEAEVVVSELLGAETMLYSKVGSTEFVSRVDARDYHNPGDK
                     VRLTFNLNKAHFFDDETSKAIV"
BASE COUNT          478 a          403 c          361 g          537 t
ORIGIN      
        1 ataagtgggt ttacgattca gcacaaattg agattgagcc agtttttcgg cgtcaatttg
       61 atctgttttc ctcacacgca agctatccag ttgcttctta gcttctaagg gattaagcct
      121 tgtataagca tagccattat cttctagaaa cgtttggaga cggcgagaat agacacctgt
      181 tgcttcaaag atgatttctg gtttatggac ggttctcaaa tcgccaagta gccgagcaaa
      241 gccgagggcg tcattggaca tggtatagcc atgaactttc tcaccattga ctagaatggc
      301 cacttctgaa cttgccttac tcacatcaat cccaaaaact gcacgcatga tattacctct
      361 ttgtcttgaa tgattccttg ttttagtgat gtcattttca atactcgacg tcaggcgtcc
      421 cacatacttt gataacattc tttctaaaac aggtgccttg ccagtttttg atgcgacgtc
      481 tagcgtcaaa agagttctcg acttaacaag acacctctac tttaacataa agaaaaagta
      541 gtgactactc tctcccgtcg gagatttcct cactactaat cttagtatgt ttttgaccag
      601 tcgagttctt tcccactccc aaaaacaagt atttatgtgt tctcaaccca aaaaaccgcc
      661 agattttcat ctagcggtca ggtgttttat gaacgatttt agaaaggtta gacaatcgcc
      721 ttacttgttt catcatcaaa gaaatgagct ttgttgaggt tgaaggtcaa gcgaactttg
      781 tctcctgggt tgtggtagtc acgtgcatcg acacgagata caaactctgt gctacccact
      841 ttagagtaaa gcatagtttc tgcaccgaga agttcagaca caactacttc cgcttcgata
      901 attgaacttg gataagtgtc caattccaac tgagaagcct tgatgtcttc tggacggata
      961 ccaagtgtga agctcttgcc gttgtagcct ttttcttcca agtgcttgcg acgaccttct
     1021 ggaagatcta ctttgaaacc atctccaaca agcacaccct cttgaagagt cactgtaaag
     1081 aagttcattg cagggctacc gatgaagctg gcaacaaatt tgtttacagg tttattgtag
     1141 agttcttctg ggctaccgat ttgctcgata cggccgattg tacctgtacc tgcttcattc
     1201 ttagtcgcag acatgataac gatacggtct gccaaggtca ttgcttctgt ttggtcgtgg
     1261 gttacgtaga tggttgttgc accgatacgg cggtgaattt tagcaatctc tgtacgcatg
     1321 gatacacgca gtttggcatc caagtttgac aaaggttcat ccatcaagaa tactttggca
     1381 tcacgaacga tggcacgacc catggcaaca cgttggcgtt gaccaccaga aaggtcagca
     1441 ggtttacgtt gcaagaattc agtcaaacct agaacttgcg ctgcttcttc tacacgcttt
     1501 ttgatttcgt ccttgctgta tttacgcaat ttcaaaccaa aggccatgtt gtcaaataca
     1561 gtcatgtgtg ggtaaagggc atagttctgg aataccatgg caatgtcacg gtctttaggt
     1621 gccacatcgt tcatcaacac accgtcgatg taagcttcac cttctgtaat atcttccaat
     1681 ccggcaatca tacgaagagt agttgattta ccgcatcctg aaggacctac gaaaacaata
     1741 aactctttat ctttaatatc tagattaaag ttttcaacg
//
LOCUS       DASGAC010000252         1748 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.254, whole genome shotgun sequence.
ACCESSION   DASGAC010000252 DASGAC010000000
VERSION     DASGAC010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.254"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            33..>1748
                     /locus_tag="U1335_002120"
     CDS             33..>1748
                     /locus_tag="U1335_002120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HEM5232544.1"
                     /translation="MTYQETYQTWLDFADLPDYLREELVAMDEKTKEDAFYTNLEFGT
                     AGMRGYIGAGTNRINVFVVRQATEGLAKLVESKGEEAKKRGVAIAYDSRHFSPEFAFE
                     SAQVLAAHGIKSYVFESLRPTPELSFAVRHYNAIAGIMVTASHNPKEFNGYKVYGEDG
                     GQMPPADADALTNFIRTIDNPFAVELADLETSKENGLITVLGEETDVKYLEELKDLNI
                     NPELIAEYGKDMKIVYTPLHGTGEMLARRALAQAGFESVQVVEAQATADPDFSTVASP
                     NPESQAAFALAEELGRQVGADVLLATDPDADRVGVEVRQADGSYWNLSGNQIGAIIAK
                     YILEAHKQAGTLPANAALAKSIVSTELVTKIAESYGATMFNVLTGFKFIAEKIQEFEE
                     KHNHTYMFGFEESFGYLIKPFVRDKDAIQAVLMVAEIAAYYRSRGMTLADGIDEIFKE
                     YGYFAEKTISVTLSGKDGAEQIKAIMAKFRDNSPAQFNATDIAIFEDFALQTKTDKDG
                     NVEKLTTPPSDVLKYTLADDSWFAVRPSGTEPKIKFYIATVGETLAEAEEKIANIEKE
                     INEFVG"
BASE COUNT          517 a          391 c          380 g          460 t
ORIGIN      
        1 tttaatagaa aaaattttta aggagatatg cgatgactta tcaagaaacc tatcaaacat
       61 ggctcgactt tgcggacctt ccagattact tgcgtgaaga attagtcgca atggatgaaa
      121 aaacaaaaga agatgccttc tatacaaatc ttgaatttgg tacagctggt atgcgtggct
      181 atattggcgc tggtaccaac cgcatcaacg tattcgtagt ccgtcaagct actgaaggtt
      241 tggcaaaatt ggtagaatca aaaggtgaag aagctaaaaa acgtggtgtt gccatcgctt
      301 acgattcacg tcacttctcg ccagaatttg cctttgaatc ggctcaagtc ttggctgcac
      361 atggcatcaa atcttatgta tttgaaagcc ttcgtccaac tcctgagttg tcattcgctg
      421 tgcgccatta caatgccatc gcaggtatca tggtgactgc cagccacaac ccgaaagaat
      481 ttaacggcta caaggtttac ggtgaggacg gcggacaaat gccaccagct gatgcagatg
      541 ctcttacgaa cttcatccgt accattgaca atccatttgc agttgaattg gctgaccttg
      601 aaaccagcaa ggaaaatggt ttgattacgg ttcttggcga agaaactgac gttaaatatc
      661 ttgaagaact caaggacctc aacatcaatc ctgaattgat tgctgagtac ggtaaggaca
      721 tgaagattgt ttacacacca cttcatggta cgggtgaaat gttggcgcgt cgtgcccttg
      781 cacaggctgg ttttgaatct gttcaagttg ttgaagcaca agcaactgct gaccctgact
      841 tctctactgt cgcttcacca aacccagaaa gccaagctgc atttgccctt gcagaagaat
      901 tgggtcgcca agtcggggca gatgtccttc ttgcaactga ccctgacgct gaccgtgttg
      961 gtgttgaagt tcgtcaagct gacggttcat actggaacct ttctggtaac caaatcggtg
     1021 ctatcattgc taagtacatc cttgaagccc acaagcaagc aggtacactt ccagcaaacg
     1081 ctgcccttgc taagtcaatt gtatctactg agttggtaac taagattgct gaaagctatg
     1141 gcgccaccat gttcaacgtc ttgactggtt tcaaattcat cgctgagaaa atccaagagt
     1201 tcgaagaaaa gcacaaccat acttacatgt ttggttttga agaaagcttt ggttatctca
     1261 tcaaaccatt tgtacgtgac aaggatgcta tccaggctgt acttatggtg gctgaaattg
     1321 ctgcctacta ccgttcacgt ggcatgacct tggctgacgg tatcgatgaa atcttcaaag
     1381 aatacggcta ctttgctgag aaaaccattt ctgttacact ttctggtaaa gatggtgcag
     1441 agcaaatcaa ggcaatcatg gcaaaattcc gcgataactc accagcacaa ttcaacgcaa
     1501 cggacatcgc gatctttgag gactttgccc ttcaaactaa gacagacaaa gatggaaacg
     1561 ttgaaaaact cactactcct ccatcagatg tcttgaaata caccttggca gatgattctt
     1621 ggtttgctgt tcgtccttcg ggaacagaac caaaaatcaa attctacatc gcaacagtcg
     1681 gtgaaacact tgctgaagca gaagaaaaaa tcgccaacat cgaaaaagaa atcaacgaat
     1741 ttgttgga
//
LOCUS       DASGAC010000253         1725 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.255, whole genome shotgun sequence.
ACCESSION   DASGAC010000253 DASGAC010000000
VERSION     DASGAC010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1725)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.255"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..>1725
                     /locus_tag="U1335_002121"
     CDS             <1..>1725
                     /locus_tag="U1335_002121"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012948.1,HMM:NF027869.1,HMM:NF027884.1,
                     HMM:TIGR04226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="isopeptide-forming domain-containing fimbrial
                     protein"
                     /protein_id="HEM5232545.1"
                     /translation="PEQLENFNHDQKQVTNKYVGNQIQNFGEYFGEGSKEIGGVNFKV
                     WTKVDRAEDGVTKTGIELGIAEDNNNYKLNQSYPDGVVTLADSQGATFELEDGTHIFV
                     EDKENSPYYNKDGVTTEKDASKELTQSKAVPFKLELPVTKPDGQGYFDLQTKLHVYPK
                     NTEDKPDVKKTFGDGNTGVKEYDVGTKIPYNITTRIPKGSTYRTLIWDDLMVNGLDFD
                     VTTGVQIVSKEVPGFNDEHYSVEKDIRGFVLKVNQKGLNLIEETAKTQDVNFTLTYNG
                     VLNTSAQINTQIPNKVTFHFGNRPRNFNDEKPKPVTPNGDNKIRVNKNWSTSKNKKEI
                     TFFVYEKETGTKVGEFKMTADEQSKEYSEGLKPGTEYIVVEQPVDGHIPSYTVEQGDD
                     KKHILSVTNNPSDNPPPVVPEEPKVITYGKRFVKTNDVDLQQSEKLQGAKFVVKNTEN
                     KYLVLDSTAKDVTAVWVDSKETATQFESKENGQFEVKGLKAGRYYLEEIKAPNGYALL
                     SNAVEFEVSPTSWGDSEVLSETNFLQIRNKKVTIPQTGGIGTLVFTVVGLSVMAFAYI
                     AMKKRQAE"
BASE COUNT          662 a          264 c          336 g          463 t
ORIGIN      
        1 accagaacaa ttagaaaatt ttaatcatga tcaaaaacaa gtaaccaata aatacgttgg
       61 taatcagatt caaaattttg gagaatattt tggtgaaggt tcaaaagaaa ttggaggtgt
      121 aaatttcaaa gtttggacta aagttgatag agcagaagat ggtgtgacta aaactggtat
      181 cgaacttgga attgctgaag ataataataa ttataaatta aaccaaagct atccagatgg
      241 agtggtaaca ttagctgata gtcaaggggc aacttttgaa ttagaagatg gcactcatat
      301 ctttgtggaa gataaggaaa actcaccata ttacaataaa gatggagtga ccactgaaaa
      361 agatgcaagc aaagaattga ctcaatctaa ggctgttcca tttaaacttg aattgccagt
      421 aacaaaacca gatggtcaag ggtattttga cttgcaaaca aaactccacg tttatccaaa
      481 aaatacagaa gataagccag atgtgaaaaa gacatttggt gatggaaata ctggagtgaa
      541 agaatatgat gtaggtacaa aaattccata taatatcaca acaaggattc caaaaggttc
      601 tacctataga acgcttattt gggatgactt gatggtcaat ggattggatt ttgatgtaac
      661 tactggagta caaattgtat cgaaagaagt tccaggtttt aatgatgaac attattcagt
      721 tgaaaaagac attcgtggtt ttgttcttaa agtcaaccaa aaaggtttga acttgattga
      781 agaaactgca aagacacaag atgttaattt cactcttacc tacaatggtg tattgaatac
      841 ttccgcacaa atcaatacac aaatcccgaa caaggtaaca ttccattttg gtaacagacc
      901 tcgtaacttt aatgacgaaa aaccaaaacc agttacacca aatggtgata acaaaattag
      961 agtaaacaaa aactggtcga caagtaagaa caaaaaagaa attacattct ttgtatatga
     1021 aaaagaaact ggtacaaaag ttggcgagtt taaaatgact gcagatgaac aatcgaaaga
     1081 atattcagaa ggtcttaaac caggaactga gtacattgta gtcgaacaac ctgttgatgg
     1141 tcatattcca tcttacactg ttgaacaagg tgatgataaa aaacatattc tttctgtgac
     1201 caacaaccca tcagataacc caccacctgt tgtcccagaa gaacctaaag taattactta
     1261 tggcaagcgt tttgtgaaaa caaatgatgt tgatttgcaa caatctgaaa aacttcaagg
     1321 tgcaaaattt gttgttaaaa acacagaaaa taaatacttg gttttagatt ctacggctaa
     1381 agatgtgaca gctgtttggg ttgattcgaa agaaactgca actcaatttg aatcaaaaga
     1441 aaacggacaa ttcgaagtca aaggtttgaa agctggaaga tattacttag aagaaattaa
     1501 agcaccgaat ggctatgctt tgttaagtaa tgcagtagaa tttgaagtta gtcctacaag
     1561 ttggggagat tcagaggtac taagcgaaac taacttcctt caaattcgaa acaaaaaggt
     1621 taccattcca caaactggtg gcattggtac ccttgtcttc acagtggttg gtttgagtgt
     1681 gatggcattt gcctacattg ccatgaaaaa gcgtcaggca gaaga
//
LOCUS       DASGAC010000254         1718 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.256, whole genome shotgun sequence.
ACCESSION   DASGAC010000254 DASGAC010000000
VERSION     DASGAC010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1718)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1718)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.256"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            15..368
                     /locus_tag="U1335_002122"
     CDS             15..368
                     /locus_tag="U1335_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004225047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HEM5232546.1"
                     /translation="MLQLNNAFIQSERKKTQHQLAERQQKNRFMGAILILVIFLFMLP
                     AYNLVGTYTNIQQQEKKLAELEKNYEELTKEQKQEAEMVAKLKNEEYAAKYVRAKYQY
                     SKEGEFVYNIPGLPK"
     gene            491..>1718
                     /locus_tag="U1335_002123"
     CDS             491..>1718
                     /locus_tag="U1335_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEM5232547.1"
                     /translation="MQKKLLVWLLPVLFGWQVVDSTEIPFELTAQEEYELTHTIYDQY
                     FQTIPQNPNVFQTENLYSDEELTIAGGQLQPNQHFSITDVLVNSKKELVFQIDDKGYI
                     LASRHLLFDDVIVKETTVEQTYWTKKGFTLLTSPIANEATEIKNDLQPYQAVMVSKIV
                     TTSLGDFAYVTDKGWIAVNNLSKTDNRVEAVQELLTNKYSKDTIGIYVKQLSTGQTAG
                     VNQEKLFYSASIAKLPILYYVQEQLNAGYIDLTTKVKYTAESISFPGAYVAGGSGSLS
                     KTPDNKDYSVEELINKTAKESDNVASNLLSYYVANKFDSNFYQVITAKTGSEWSMVTR
                     ETSAEIAGKMMEALYIQNGYVLESLLSTQFDNQRISKDISVPVAHKIGDADDVKHDVA
                     IVYAESPFVLSIFTDKS"
BASE COUNT          617 a          272 c          323 g          506 t
ORIGIN      
        1 tgaagaaatc taaaattcta caactgaata atgcctttat tcagtcggag cgtaaaaaaa
       61 ctcagcatca attggcagaa cgccaacaaa aaaatcgttt tatgggtgcg attctcattc
      121 tagttatctt tctttttatg ttgcctgcct ataatcttgt tgggacttac actaatattc
      181 agcagcagga aaagaagctt gctgaattgg aaaaaaatta cgaagaactg accaaagaac
      241 agaagcagga agcagaaatg gttgcaaaat tgaaaaatga ggaatacgca gcaaagtatg
      301 ttcgggctaa gtatcaatac tctaaagaag gggaatttgt ctacaatatt ccagggttac
      361 caaaatgacc gaatctattt ttaaaattgt agagcaattt ttacagcatt ctgatgaaaa
      421 attagaagag ttgaatcaaa agaatagaga attaaagcta gaagaaaatg aatcgtagaa
      481 aggagggagt atgcagaaaa aactgctcgt atggttattg ccagttttat ttggatggca
      541 ggtggtcgat agtacagaaa taccatttga actcacagcg caagaagaat acgaattgac
      601 tcatactatc tatgatcagt attttcaaac tatccctcaa aacccaaatg tttttcaaac
      661 tgagaatctt tattcagatg aagaactgac tatagcaggt ggacaattac agccgaacca
      721 acatttttct attacggatg ttctagtcaa tagcaaaaaa gaattggttt tccaaataga
      781 tgacaagggt tacattcttg caagtaggca tctactattt gatgatgtaa ttgttaaaga
      841 aactactgta gagcaaactt attggacaaa aaaaggtttc acattgttaa cctcaccaat
      901 tgctaacgaa gctacggaaa taaaaaatga tttacaaccc tatcaagctg ttatggtttc
      961 taaaatcgta acaacttccc taggtgattt tgcctatgtt acagataaag gttggattgc
     1021 agtaaataat ctttctaaaa cggataatag agtagaagcc gttcaagagt tgttgactaa
     1081 caaatattcc aaagatacta ttggtatata tgtgaaacaa ttgtcaacag gtcaaactgc
     1141 aggtgtaaat caagagaaac tattctattc tgccagcatt gctaaactac caattcttta
     1201 ttacgttcaa gagcaactga atgctgggta cattgatttg actactaaag tgaaatatac
     1261 agccgaatct atatccttcc caggagctta tgttgctgga ggaagtggtt cactgtcaaa
     1321 aactcctgac aataaagatt attcagtgga agaattgatt aataagactg ctaaagagtc
     1381 agataatgta gctagtaatt tactttctta ttatgtagct aacaaattcg attctaattt
     1441 ttatcaagta ataactgcta aaacaggtag tgagtggagt atggttacac gtgaaacttc
     1501 agctgagatc gcagggaaaa tgatggaagc cttatatatt caaaatggct atgtgctaga
     1561 aagtttgtta tctactcaat ttgataatca acgtatttcg aaagacatct cagttccagt
     1621 tgctcataaa attggcgatg cagacgatgt caaacacgat gtagcgattg tttacgcaga
     1681 gtctcctttt gttttatcta tttttacaga taaatcaa
//
LOCUS       DASGAC010000255         1709 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.257, whole genome shotgun sequence.
ACCESSION   DASGAC010000255 DASGAC010000000
VERSION     DASGAC010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1709)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1709)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.257"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..467
                     /locus_tag="U1335_002124"
     CDS             <1..467
                     /locus_tag="U1335_002124"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232548.1"
                     /translation="ISSVDDLSQKLPKKVIIDTTTLVKSRRVAPKVCSFINNHLGIPI
                     ESSSDSNGEIKWLDNISDATPILMNSNIPKLVWDNRFKCPGVSNFINWSYSKGDTYPK
                     TCIILTKPASTLSNWDTLSNEVRNKLYVALTRSLGDVYLISSTIFAEYKNSI"
     gene            529..1638
                     /locus_tag="U1335_002125"
     CDS             529..1638
                     /locus_tag="U1335_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014638276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEM5232549.1"
                     /translation="MKKQVIIIGGGIVGSTAAFYLSQEEQVHLTLIDSGIGTATRAAA
                     GIICPWMAQKKNKDWYKLTSDGAVFYRQLVADLEKSGATEIPFKQTGTIGLKSKPELL
                     DKIQKIAEERRVDTPTIGEITPLIGSEINQYLPLLKPDYFGIHLEGGGRIDGGRLIDI
                     LQEQFLKNGGTRIYGQAKLLDNHTVEVDNQVLTADHIILATGAWLPHILEPLGYQVDV
                     RPQKGQLFELDTEFDTDNWPVCMPYGEIDILPFENGKIIIGATHEDDMGYDLELDPEK
                     IQAMHDKIAEFMPDLANYPVARTRIGTRAYTSTYSPFYGNIEDMPNVWVASGLGSTGL
                     TNGPIIGWQIAKEILNQETNFDRTPYSPNRYILKK"
BASE COUNT          551 a          333 c          325 g          500 t
ORIGIN      
        1 taatatcttc tgttgatgat ttgtcccaaa aattacctaa aaaagtcata attgacacaa
       61 ctactctagt aaaaagtcgt agggtagctc cgaaagtttg tagctttatc aataatcatt
      121 taggtattcc aatcgaatct tcatctgata gtaacggaga aattaagtgg ctagataata
      181 tttctgatgc tacacctata ttaatgaact ctaatattcc caaattggtt tgggacaata
      241 ggtttaagtg cccaggtgtt agtaatttta tcaattggtc ttactcaaaa ggtgatacct
      301 atcctaaaac ttgcataata ctaaccaaac cagccagcac tctatcaaat tgggatactc
      361 tatccaatga agtacgaaat aagctatatg ttgcgttaac tcgttcattg ggggatgttt
      421 atttgatttc cagtactatt tttgcggaat ataagaacag catataaatt gtgagtatag
      481 gttaatctta atcttggact gctgtctggg ctgtggtata attaacttat gaaaaaacaa
      541 gttattatta taggcggagg aattgttggc tctactgcag ccttttatct ctcccaagaa
      601 gaacaagtcc atcttactct cattgattca ggtattggaa cagccacacg agctgccgca
      661 ggtatcatct gcccatggat ggctcagaaa aaaaataaag actggtataa gctgacttcc
      721 gatggcgctg ttttctaccg tcaattggta gcagatttgg aaaaatcggg tgctactgaa
      781 attccattca aacagactgg aaccatcggc ctaaaaagta agcctgaact acttgataaa
      841 atccaaaaaa ttgccgagga acgtcgcgta gatactccga ctattggcga aattactccg
      901 cttataggct cggaaattaa ccagtacctg ccactactta agccagacta ctttggtatc
      961 catttagaag gtggcggtcg tattgatggt gggcgtttga ttgatattct tcaggaacaa
     1021 tttttgaaaa atggcggtac acgtatctac ggacaagcaa aactgctcga caaccatact
     1081 gtcgaagtag ataatcaagt gcttactgct gaccatatta tcttagccac aggagcctgg
     1141 ttgccacata ttcttgaacc tcttggttat caagtggatg ttcgaccaca aaaaggacaa
     1201 ttgttcgaat tagatacaga attcgatacc gacaattggc cagtttgtat gccttacgga
     1261 gagattgaca tcctaccatt tgaaaatgga aaaatcatta ttggtgcaac tcatgaagat
     1321 gatatgggct acgatttaga actagaccct gaaaaaatcc aagccatgca tgataaaata
     1381 gccgaattca tgcctgattt ggcaaactat cctgtagcca gaactcgcat tggaacgcgc
     1441 gcctatactt caacttattc accattctac ggaaatattg aggatatgcc taatgtctgg
     1501 gtagctagtg gtctaggctc caccggtctg acaaatggcc caattatcgg ttggcaaatt
     1561 gctaaagaaa ttctcaacca agaaacaaac tttgaccgta caccatattc tccaaataga
     1621 tatattctca aaaaataaga tacgatacgt ttagattcta ctaactcttt aaatgtagat
     1681 actaagacta gttgttatct aaccaataa
//
LOCUS       DASGAC010000256         1708 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.258, whole genome shotgun sequence.
ACCESSION   DASGAC010000256 DASGAC010000000
VERSION     DASGAC010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1708
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.258"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(94..1581)
                     /locus_tag="U1335_002126"
     CDS             complement(94..1581)
                     /locus_tag="U1335_002126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1846 domain-containing protein"
                     /protein_id="HEM5232550.1"
                     /translation="MKKIAFDSTKYLNLQRDHILERIAQFEGKLYMEFGGKMLEDFHA
                     ARVLPGYEPDNKIKLLQELKDQVEIVIAINASNIEHSKARGDLGISYDQEVFRLIDTF
                     NDIDIYVGSVVITQYRNQPAADAFRKQLEKHGIKSYLHYPIKGYPSDIDHIISPEGMG
                     KNDYIETSRNLVVVTAPGPGSGKLATCISQLYHDQLHGVTSGYAKFETFPVWNLPLHH
                     PVNLAYEAATADLDDLNMIDPFHLQTYGKTAVNYNRDIEVFPVLNRTFERILNKSPYA
                     SPTDMGVNMVGYSIVDEEAAIEASKQEIIRRYYQTLVDFKAERVSEQAVKKIELLMNE
                     VGVTPADRKVVIAAREKAELTTSPALAIQLPTGEIVTGKTSDLLKPTATVLLNAIKQI
                     ANIDDEILLIEPNYIRPIQELKADYLDKTNTRLDASEILNALAITAQDSPLAARAMKE
                     LGQLNGSEAHSTVILSDEDKSVLRKLGINLTFDPIYQHNKFYQAK"
BASE COUNT          440 a          335 c          421 g          512 t
ORIGIN      
        1 gacttttgtc ccagcctctt tttcttatat acaggcaacc attcattcac gaaaaaagtt
       61 ctaacctcaa aatgagatta gaacaggatt tggttattta gcttgataaa acttattgtg
      121 ctggtagata gggtcaaagg taagattgat gcctaattta cgaaggacac tcttgtcttc
      181 atcagatagg ataacggttg agtgggcttc gctaccattt aattggccta attctttcat
      241 ggcacgtgca gcaagagggc tatcttgtgc agtaatggca agggcgttaa gaatctcact
      301 tgcatcaagt cgtgtattgg tcttatccag ataatctgcc ttcaattcct ggattggacg
      361 gatgtagttt ggttcgatga gaagtatttc atcatcgatg ttagcaattt gcttgatggc
      421 gttgagaagg acagttgcag taggcttgag gaggtcggat gtcttacctg ttacaatctc
      481 tccagttggc aactgaatag caagggcagg gctagttgtc agctctgctt tttcgcgcgc
      541 agcgataaca accttacgat ctgctggtgt cacaccgact tcattcatga ggagttcaat
      601 ctttttaact gcttgctcgc tcactcgctc tgctttgaaa tcaaccaagg tctggtagta
      661 gcggcggata atttcttgct tggaagcctc aatagcagct tcttcatcaa cgatggagta
      721 gcccaccatg ttaacgccca tatctgtcgg tgaggcgtaa ggtgatttgt tcaaaatacg
      781 ttcaaaggta cggttgagga cagggaagac ctcgatgtca cggttgtagt tgaccgcagt
      841 tttgccgtaa gtttgcaggt ggaaggggtc gatcatgttg aggtcgtcta ggtcggcagt
      901 tgctgcttca taggccaagt taacgggatg gtggagtggt aagttccaaa ctgggaaggt
      961 ttcaaacttg gcatagcctg atgttacgcc atgcagttgg tcgtggtaaa gttgggagat
     1021 acaggtcgcc aatttacctg aaccaggtcc aggtgcggtg acaacgacga ggttgcgact
     1081 agtttcaatg tagtcatttt tgcccatacc ttctggtgag atgatgtggt caatatcaga
     1141 aggatagccc ttgattgggt agtggagata ggacttgata ccatgttttt ccaactgttt
     1201 gcggaaggcg tctgcggctg gttggttgcg gtattgggta atgaccacag aaccaacata
     1261 aatatcaata tcattaaatg tatcaatcaa gcggaagact tcttggtcgt aagaaatacc
     1321 taggtcgccg cgtgccttag aatgctcgat gttgctggca ttgatggcga tgacaatttc
     1381 tacttggtct tttaattctt ggaggagttt gattttgtta tctggttcat agccaggtaa
     1441 aacacgggct gcgtggaaat cttccagcat ttttccacca aattccatgt agagtttgcc
     1501 ttcgaactgg gcaatacgct ctaaaatgtg gtcacgttgc aaattcaagt atttagttga
     1561 atcaaatgcg attttcttca tctcaatatg tcctccaaat gtgtattaat ctctgggaaa
     1621 acaaaaaata gctccctaaa actagggagc cttttctccg acctctcaaa agaggtgccc
     1681 gaacaatact ataacaaact gtgctaat
//
LOCUS       DASGAC010000257         1708 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.259, whole genome shotgun sequence.
ACCESSION   DASGAC010000257 DASGAC010000000
VERSION     DASGAC010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1708
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.259"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..>1708
                     /locus_tag="U1335_002127"
     CDS             <1..>1708
                     /locus_tag="U1335_002127"
                     /inference="COORDINATES: protein motif:HMM:NF012403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM5232551.1"
                     /translation="EKEKLEQKIVLELESLIAALKQLEATTPNRLQLNFQTDERRDSW
                     LNAESELYKRYAAILREYSFEDRVEDILDKDKLIELFIENNATYYALIEETTGSKKKY
                     IPNDLPSIIVEKVKQNEINRLGLKVVLRSYQTFGVQYVLHYKNVLLGDEMGLGKTIQA
                     IAIANHLFHNKKIYTVVVCPLSVLENWDREIQKWSTLPTFVYRGNLRQTLLHQWQQNG
                     GVLLTNYEQVKTLLTSIRNKNIDFLIIDEAHYIKNPNTMRTKYSMELSKLADYKLFMS
                     GTPLENRFSEMLHLINMLNPALANKLESRYHSSKDLKIKLSTIYLRRKRKEVLDELPE
                     LETIELWSQFTPIQQQFYDESLLDGPGGIMRMRRAAFFGNDSKKILQILEICKEAKET
                     GQKVIIFSFFKEGVLYRLQDELKHLARFIISGDISPKQRQETIDEFSKDPNQTVLLSQ
                     IDAGGVGLNIQAANIVILCEPQWKPSTEQQAISRVYRMGQSRKVIVYRLLTEESIDES
                     IVKLLSEKIELFNKYANDSSIAEAFEKSEVFEISNTEEKKIKQEVFELEKKRLALRKS
                     NS"
BASE COUNT          678 a          261 c          286 g          483 t
ORIGIN      
        1 tagaaaaaga gaaactagaa caaaaaatag tgttagaatt agaatctctg attgcagcct
       61 taaaacaatt agaagcaact actcctaata gattgcaatt aaactttcaa acagacgaaa
      121 gaagagatag ctggctaaat gcagaatcag aactttacaa acgatatgcg gctattttaa
      181 gagaatattc atttgaagat cgagttgagg atatccttga caaagataaa ttaatagagt
      241 tatttattga aaacaatgct acttactatg ctctcataga agagacaacc ggttctaaaa
      301 agaaatatat tcctaacgat ctacctagta tcattgtaga aaaagtaaag caaaatgaaa
      361 ttaatcgact tggtttaaaa gttgttttgc gttcatatca aacatttgga gttcaatatg
      421 ttcttcacta taaaaatgtt ctacttggtg atgagatggg tcttggtaaa actattcaag
      481 ctattgctat cgcaaaccat ttgtttcaca ataaaaaaat atacactgtt gtggtttgtc
      541 cattaagtgt attagaaaat tgggatcgag aaattcaaaa atggtcaact cttccaactt
      601 ttgtgtatag aggaaatttg cggcaaacat tactacatca atggcaacaa aatgggggag
      661 tattacttac taattatgaa caggtcaaaa ccttactgac ttcaataaga aacaaaaata
      721 ttgatttttt aataatcgat gaagcacact atattaaaaa cccaaataca atgcgaacaa
      781 aatactcaat ggaactaagt aaactcgctg attataaact ttttatgtcg ggtacacctc
      841 tagaaaatcg attctctgag atgttacatc taattaatat gttgaatcca gctctagcaa
      901 acaaattaga atcaagatat cattcttcta aggacttaaa aataaagctt tctactatct
      961 acttaagaag aaaacgaaaa gaagttcttg atgaattacc tgaactagaa acgatagaac
     1021 tgtggtctca atttacacca atccagcaac aattctatga tgaatcatta ctagatggac
     1081 caggaggtat catgagaatg agaagggctg catttttcgg taatgattca aagaaaatac
     1141 ttcaaatact tgaaatctgc aaggaggcta aagaaactgg tcaaaaggta attatctttt
     1201 cattttttaa agaaggtgtc ctttatagat tacaagatga attaaaacac ttagctcgtt
     1261 tcataatttc aggtgatatt tcaccaaaac aaagacagga aaccatagat gaatttagca
     1321 aagatccaaa tcagacggtt ttactcagcc aaattgatgc cggaggagtc ggtttaaata
     1381 ttcaagcagc caacattgtt atcctctgcg aacctcaatg gaaaccctca accgaacaac
     1441 aagcaataag ccgtgtctat agaatgggac aatccagaaa agttatcgta tatcggttgt
     1501 taactgagga aagcatcgat gaatccatag taaaactact aagtgaaaaa attgaattat
     1561 tcaataaata cgctaatgat tctagtattg ctgaagcatt tgaaaaaagt gaagtttttg
     1621 aaatatcaaa tacagaggag aaaaaaataa aacaagaagt atttgaatta gagaaaaaaa
     1681 gattggcatt acgaaaaagc aactcaat
//
LOCUS       DASGAC010000258         1693 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.260, whole genome shotgun sequence.
ACCESSION   DASGAC010000258 DASGAC010000000
VERSION     DASGAC010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1693)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1693)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1693
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.260"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            17..922
                     /locus_tag="U1335_002128"
     CDS             17..922
                     /locus_tag="U1335_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000429573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5232552.1"
                     /translation="MSNLYPFGPTFKQLREKRGLSLKEAASTVVSPQFLSRFEKGEKG
                     ISLENFNRLLIVLGLEWKDFAAAFADNGGDCIEFPAYEFSKHITNEEDIFRYLPEYEK
                     LFDRYLTDIPTQPDILLKIIKLGHYPTISKSEETVEKIQPVINHLMKLETYNSAELEI
                     YSRIINHCPLELVEHMSKQLLFMYKQSVDTDTYIRILNGLTFTAKHFSEQGYHLRADN
                     IIKEVKKLQTFERGYLAIPLMFLEVEHIYNQFRWNKTEAIELAKNMLNYLESAKFIDQ
                     NYYSNFIKAFIYNCHKLNKTGEDLF"
     gene            complement(1193..1297)
                     /locus_tag="U1335_002129"
     CDS             complement(1193..1297)
                     /locus_tag="U1335_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019773529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative holin-like toxin"
                     /protein_id="HEM5232553.1"
                     /translation="MTAFEVVQTILGFGSFTIALIGLCYKIFKDGDKK"
BASE COUNT          599 a          323 c          284 g          487 t
ORIGIN      
        1 gattgaaagg aacattatgt cgaatctata cccgtttgga ccaaccttta aacaattacg
       61 agagaaaaga gggctcagct taaaagaggc tgcttctacg gttgtatcac cgcaatttct
      121 gagtcgtttt gaaaaaggag agaagggaat ttcccttgaa aactttaacc gtttattgat
      181 tgtgctcggc ttagaatgga aggactttgc agctgcattt gcagataatg gcggagattg
      241 catagaattt cctgcttacg agttttccaa acatatcaca aatgaagaag acatatttcg
      301 ctatcttcct gaatacgaaa aattatttga tcgataccta actgacattc ctacacagcc
      361 agacatatta ttaaagataa tcaagcttgg tcattatcca acaatttcta agtcagaaga
      421 aaccgtcgaa aaaatccagc ctgttatcaa tcacctgatg aagcttgaga cctataatag
      481 tgctgaacta gagatttaca gccgaattat caatcactgt cctctcgaat tggtagagca
      541 catgtccaaa cagctcctgt ttatgtacaa gcaaagtgta gatacggaca cctatattcg
      601 tatcttaaat ggactgactt tcacagccaa acacttttcc gaacaagggt atcatctaag
      661 ggctgataac attattaaag aagtgaaaaa gcttcaaaca tttgaacgtg gttatttagc
      721 tatacctctc atgttccttg aggtagaaca tatctacaat caattccgct ggaataagac
      781 tgaagctatc gaactcgcta aaaatatgtt aaattacttg gaaagtgcta aatttattga
      841 ccaaaattat tattcgaatt tcatcaaagc ctttatctac aactgtcata aattaaataa
      901 aacaggcgaa gacctatttt aacgttaaag taagttctag tctggcacaa aaactagaaa
      961 tcagactaat acaaaaaaat aaggcagaac ctactacgaa agcttgacat aaactaggta
     1021 aagtaagcta atcactaaaa ttaacagatt atttgtattt tataagtaat ctgatataat
     1081 agagatagaa aaggggttgg tctgcaaacc aaccccatgt agaaccgttt aagacggtga
     1141 ccatatatta gaatgtaact cgtccaacaa ctcgatcaaa agtggggacg ggttattttt
     1201 tatcaccatc tttgaagatt ttatagcaca agccaatcaa tgcaatagta aaactaccaa
     1261 agcctagaat agtttgcaca acttcaaaag ctgtcaaaag atgctactcc tttccgtcag
     1321 attttgatga attgcccata ggcatcacct cactttcaga aaatcaagag ccaccgtctt
     1381 cacttttcta cccatctagt ataacatatt cattcctaaa aattattgga atagtgcaat
     1441 attcccgaaa tctttaagaa accataaaaa aattacaact cttctatagt gatgatattt
     1501 tttcatttta tactcaatga aaatcaaaat cagactagct ccaaaggttt gggaaacctt
     1561 tggaggttgg agatagagcg aacgtagttc gtttctactc agcagataga accctgttac
     1621 tattttgttt caaggtaaca ggctgaaagg ctccactgga gcctttcact catcaaatca
     1681 aatcaaatca agt
//
LOCUS       DASGAC010000259         1682 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.261, whole genome shotgun sequence.
ACCESSION   DASGAC010000259 DASGAC010000000
VERSION     DASGAC010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.261"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            236..1656
                     /locus_tag="U1335_002130"
                     /pseudo
     CDS             236..1656
                     /locus_tag="U1335_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937373.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
BASE COUNT          529 a          290 c          339 g          524 t
ORIGIN      
        1 tataaaaatg gttaaccctt ctttaggtaa acaatttaaa aaaaattaga tttgttggat
       61 tggtaaaata acgcaactag tagacaatcg tctactgttt ttatacaata aactcaacca
      121 aattggttta gttttgtcat tcatacttaa aggaggtacc gttctttgga tgaattgtat
      181 acaagaataa gtagtacaac aaaacaagta ttatatcagt ttatgaaaga ccaagatatc
      241 ttattttcaa ttctcaccag aaaaccaata cctagatcga aaatcagcca gaaagaaacc
      301 gtctgaactt ctcaaacact tgattgcttt taccaatgtg gatggcggtc aactggttat
      361 tggtattgag gacaagaaac aggataatat tatcactggt ttcaaggacg gcagggctta
      421 tccatagacg atttcaaaaa gattgaccgt gagatgcgtg agactccttt ggatttatct
      481 tttgaggaaa tccctgtaat caatcataag ggtgaagaag atttcatttt agttatctct
      541 gtggaattgt catcaaatcg tgtgattgca gcaccaaatg atgatgttta tcttcgtcaa
      601 ggagatgaat ctgtcaagtt gagttatgag caacgaactc aactcagtta tgataaagga
      661 caacgcttct ttgaagatga ggtcgtccct gatgccagtc tgaaagatat tgacgatagc
      721 ttggttcagg attttaaaaa tcgttttgat atatcagagc gttctgtgga agaaatcctt
      781 aaagcacgtc aatttctaat caatgggaaa ttaaccaagg cagcaatttt actctttggc
      841 aaatatccgt cagcattctt ccctcaagcg cgtgtccgat tccagcgatt tgatggtacg
      901 gatatgggaa caggtagtag ttttaatgtt attaaggaag taacttttga tgatgctctc
      961 ccaactttga ttatcaaggt tcgagatttt attcgtactc agcttcgtga atttcagtat
     1021 ttggatgaca atgggcaatt ccaaattttg cctgagtatc ctgaatttgc ctggtttgaa
     1081 ggtgttgtca atgctgtaac tcaccgtgat tattctgtct atggtgatca cattcgtgtg
     1141 cttatgtttg atgatcgact agagattcat agcccaggga aattacccaa tatcgtcacc
     1201 gttgacaata tcaagcatga acgattttca cgaaaccctc gcattgccag aaccttgaca
     1261 gagttcggtt gggtacgtga gatgaatgaa ggagtaaagc gtatctattc tgagatggaa
     1321 tctgcttttc tccatgaacc taaattctca gaacctggga ataaggttgt cctgacgctt
     1381 gagaacaaca ttgtcagccg acatctccgt acaagagaca gcttggaaaa acagttctct
     1441 gattttggtg aattaacagc agacgagcaa ttgattgtcc actatatgta taactcaggc
     1501 aataaaatga caaccgcaaa agccattgag cttacaggta ggagtcgatc atttgttgtt
     1561 aaattacttc ataatcttcg tgaactagaa atcattactt ggtttggttc aagtaaaaat
     1621 gaccgcaatc agtattatct tttagttgat aaatgattgc agtcaggata ctattagtaa
     1681 ta
//
LOCUS       DASGAC010000260         1679 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.262, whole genome shotgun sequence.
ACCESSION   DASGAC010000260 DASGAC010000000
VERSION     DASGAC010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1679
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.262"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..1223
                     /locus_tag="U1335_002131"
     CDS             <1..1223
                     /locus_tag="U1335_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001059302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5232554.1"
                     /translation="PSADEQTVNQFIEQLDNQIFSQYRTHSKQQRKLAQFQSYFLFND
                     ILTEYWTDQQEENERMFYYPIYLWWQITAVVPLRPREFLLTQRNCLTMKDGKYYLTLR
                     RNNLKGNDKGVSHKISEDYYLTTYEIPQRLAESIKEYLNLTKDLNVTQLDTLFLTDAH
                     YQKFNRTTGKRNRFFTYSNLNTVLKKFYKEVIGERYNYHIYQTNPREKLEESEINFIH
                     LGDTRHIAMINLIAENASPVTAMLLAGHDSVSTSAHYFANLSQFIECRSYQVYRKLTN
                     SQTTYEISKAQPRYTVGRAFVQLDNKGRCYSPKYASGDYSDCLKVISKNAELGACTSC
                     PFYRKAGKDFFSMDKTYKKSIDEEAMIVKQAINLVRKGKGNYEDIGEALLKLKTVSYS
                     YQEYLTSKHITEGK"
     gene            1240..>1679
                     /locus_tag="U1335_002132"
     CDS             1240..>1679
                     /locus_tag="U1335_002132"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232555.1"
                     /translation="MARKKQIEDENLIRTFEEYLIDECHADIQLFKLPKFGQYLRNNG
                     YPNLADSSLRRNTVFRGHLEKVKEKYEDEGMLAVLTYKTLDVVSFLRMHPSPELLKKG
                     LVKLNDHHKHIAEAAILFKKEVDLLQMEKKKLLEQINLLESEISS"
BASE COUNT          631 a          276 c          305 g          467 t
ORIGIN      
        1 tgcctagtgc ggatgaacaa actgtgaacc aatttattga acagctagac aatcaaattt
       61 tttcacaata cagaacccat tcaaaacaac aacgaaaact agctcagttt caatcttatt
      121 ttctctttaa tgatatcttg acagagtatt ggacagatca gcaagaagag aatgagagaa
      181 tgttttacta tcctatctat ctatggtggc aaattacagc agtagttcca ttacgtccga
      241 gagagttcct acttactcag agaaattgtc ttacaatgaa agatggtaaa tattacttaa
      301 cattaagaag aaacaatcta aaaggtaacg ataaaggtgt ttcccataaa atatcagaag
      361 actactattt gactacgtat gaaatccctc agaggttggc tgagtcaatt aaagaatatt
      421 taaatcttac gaaggattta aatgttactc aattagacac actatttttg acagacgctc
      481 attatcaaaa gtttaataga actacaggaa aaagaaatcg ttttttcacc tattccaact
      541 tgaatactgt tttaaaaaaa ttctacaaag aggtcatagg agagcgctac aattatcata
      601 tctatcagac caacccacgt gaaaaactgg aagagagtga aataaatttt attcaccttg
      661 gagataccag gcatatcgct atgattaacc tgattgccga aaatgcaagc ccagtaacag
      721 caatgctact tgcaggtcat gacagcgtgt caacttcagc acattacttt gcaaatctta
      781 gtcaatttat cgaatgccgt agttatcaag tatatcgcaa acttactaac tcacaaacaa
      841 cctatgagat tagtaaagct caacctagat atacagtagg aagagcattt gttcaactag
      901 ataacaaagg acgatgctac tcaccaaagt atgcttcagg agattattca gattgcttaa
      961 aggtaatcag taagaatgcg gaactcggtg cctgcacaag ttgtccattc tatcgaaaag
     1021 caggaaaaga tttctttagt atggacaaga cttacaaaaa aagtattgat gaagaagcca
     1081 tgattgtaaa acaagccatt aaccttgtta gaaaagggaa ggggaattat gaggatatag
     1141 gggaggcctt attaaaactt aaaacggtaa gttactctta tcaggaatac ctaacctcta
     1201 agcatatcac ggaaggaaag taaggaggat ctgtgaaaaa tggctagaaa gaaacaaatt
     1261 gaggacgaaa atctcatacg aacttttgaa gaatatctta tagatgagtg ccatgcagac
     1321 attcaacttt ttaaactacc caagtttggt cagtatttaa gaaataatgg ctatccaaac
     1381 ctagcagatt cgtctttacg tagaaataca gtttttaggg gacacctcga aaaagtaaaa
     1441 gaaaaatatg aagatgaagg catgttagct gttttaacct ataaaacttt agatgtcgtt
     1501 agttttctta ggatgcatcc atcacctgaa ttgttaaaaa aggggttggt aaagttaaat
     1561 gatcatcaca aacatattgc agaagcagct attctgttta aaaaagaagt ggatttgcta
     1621 cagatggaaa agaaaaaact tttggaacag attaatttgt tagaaagtga aatttcttc
//
LOCUS       DASGAC010000261         1631 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.263, whole genome shotgun sequence.
ACCESSION   DASGAC010000261 DASGAC010000000
VERSION     DASGAC010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.263"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            155..1528
                     /gene="dnaA"
                     /locus_tag="U1335_002133"
     CDS             155..1528
                     /gene="dnaA"
                     /locus_tag="U1335_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEM5232556.1"
                     /translation="MNQEQLFWQRFIELAKVNFKPSIYDFYVADAKLLGINQQVANIF
                     LNRPFKKDFWEKNFEELMIAASFEIYGEPLAIQYQFTEDEQEIKNTTNARSSVVHQVQ
                     TPESATPQETFKPVHSDIKSQYTFANFVQGDNNHWAKAAALAVSDNLGELYNPLFIFG
                     GPGLGKTHILNAIGNKVLADNPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLD
                     LLLIDDIQSLRNKATTQEEFFHTFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKW
                     GLTSEITPPDFETRIAILRNKCENLPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLI
                     ATMRQLSEISVEVAAEAIRSRKQTNPQNMVIPIEKIQTEVGNFYGVSLKELKGSKRVQ
                     HIVHARQVAMFLAREMTDNSLPKIGKEFGNRDHTTVMHAYNKIKTLLLDDENLEIEIT
                     SIKNKLR"
BASE COUNT          558 a          305 c          285 g          483 t
ORIGIN      
        1 attacaaaaa gtcaggacca gcaaaggttc tgacttttat tcacatcttg tggaaaactt
       61 ttcttaacag tgtggatttt taaaattatc tgtggaaaac ttttgttttt tatggtacac
      121 tattctaacg aatataatgt gaaaggggga aaatatgaac caagaacaac ttttttggca
      181 acgatttatt gaattagcaa aagtaaattt taagccatct atttatgatt tttatgtcgc
      241 tgatgcaaaa ttactcggaa tcaaccagca agttgccaat attttcttaa atcgtccatt
      301 taaaaaagat ttctgggaaa aaaacttcga agagttaatg attgccgcta gttttgaaat
      361 ctacggagag cctcttgcca tccaatatca atttacagag gatgaacagg agattaagaa
      421 cactacaaac gcaagaagtt cagtggttca ccaggtacag acacctgagt cggctactcc
      481 tcaagaaact tttaaaccgg ttcattctga tataaaatcc cagtacacct ttgctaattt
      541 tgtacaagga gacaataatc actgggcaaa ggctgcagct ttagctgtat ctgataacct
      601 aggtgagctc tacaatccat tattcatttt tggtggtcct ggtcttggaa aaactcatat
      661 tttaaatgcg attggaaata aggttctagc cgataatccc caggcaagaa taaaatatgt
      721 ctcatcggaa acattcatca atgaattttt agaacacctc cgtctcaatg atatggaaag
      781 tttcaaaaaa acctatcgca atctggactt acttctaatt gatgacattc agtctctccg
      841 taataaagca acaacacagg aagaattttt ccatactttt aatgcgcttc atgaaaaaaa
      901 taagcagatt gtactcacaa gcgaccgtaa tcccgatcac ttagacaatt tagaagaaag
      961 actagtaaca cgtttcaaat gggggttaac cagtgaaatc actccacctg attttgaaac
     1021 acgtatcgca attttacgta acaagtgcga gaacctgcct tacaacttta caaatgagac
     1081 gctatcctat ctagctgggc aatttgattc gaacgtacgt gaccttgaag gtgccttaaa
     1141 agatatccat ttgatagcca ctatgcgtca actgtctgag ataagtgttg aggttgctgc
     1201 tgaggctatt cgatcaagaa aacaaacaaa tccacaaaat atggttattc ctattgagaa
     1261 aatccaaacc gaagtgggaa atttctacgg tgtcagcttg aaagaattaa agggttctaa
     1321 gcgtgttcaa catatcgttc acgcgcgaca agttgctatg tttttagcac gtgaaatgac
     1381 agacaattcc cttccaaaaa ttggaaaaga atttggtaat cgagaccata caaccgttat
     1441 gcatgcatac aataaaataa aaactctcct cttggatgat gagaatttag aaatagagat
     1501 taccagtata aaaaataaac ttcgttaacc tgtgtataac ttttcaaaaa agctctgttt
     1561 tttccacaag ttgtgaacaa gttaatttcc gcagttttat tggtctttca tcacttttcc
     1621 acagaataca c
//
LOCUS       DASGAC010000262         1617 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.264, whole genome shotgun sequence.
ACCESSION   DASGAC010000262 DASGAC010000000
VERSION     DASGAC010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.264"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(373..666)
                     /locus_tag="U1335_002134"
     CDS             complement(373..666)
                     /locus_tag="U1335_002134"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232557.1"
                     /translation="MPRLEKTRLIQVSEDVVQPMLDSTLENLMYSSATMFINPNLFTI
                     IVFMVNVVLVAVLIYLKCQMVFLVESSINEALRASSTSCKSKKKPRRFHRHGR"
     gene            1036..>1617
                     /locus_tag="U1335_002135"
     CDS             1036..>1617
                     /locus_tag="U1335_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEM5232558.1"
                     /translation="MKKIIKRYQEKGSVVIGYARVSSTDNRQELGLEVQKEALNFCDK
                     LYIEKESGGNQDRPQLQKALKLAKKCAECGIETSFVVYRLDRLTRKMLHLSAIISELT
                     SYNIRLQSLHEQIETDSLTGKFFCLMLGYVAEWELQAISERTKDGLRKARERGIKLGN
                     KGISKSKEKQVIISYLEEEMTVRDIASKFQISTA"
BASE COUNT          551 a          296 c          300 g          470 t
ORIGIN      
        1 tcacaagtta acaacatagt aacgaaaaaa tattgtaaaa atgcagtaaa atcagcacat
       61 tttatgatat attatggtaa aataggtagt agatggctaa cttttagttt ttattttttg
      121 aaatttcgag agtccttggg ttgcaatatc tgttgagatg tggtacacta ggatagttgt
      181 tatttaaaaa atgattcttt cagaattttg aaaattttct gaaaacattc gtttttgtta
      241 acaataaaaa accattccaa aagaggaata gttctttaca tttaagaagg caactgacta
      301 ctcccaatag tcagactgat tgcttatttc aaaactcata ctggaaaacc gtggatgttt
      361 tgaaattatt ttttatctac cgtgacgatg gaatcgtcgc ggttttttct tgctcttgca
      421 agaggtggac gaagccctaa gagcttcatt gatacttgat tccactagaa acaccatttg
      481 acatttcaag tagataagga cagcgaccaa taccacattg accataaaca caataatcgt
      541 aaaaagattt gggttgatga acattgtagc tgagctatac atcagattct caagtgttga
      601 gtcaagcatc ggctgaacaa catcttcaga gacttgaatc aatcttgttt tctctaatct
      661 tggcataggc aacaccctcc tttcttttag gataataaac taaaagaaat aagtaatgca
      721 gcaagccttc ttaaattata aaacacccac aaaacaactc aaccacaaac actaaaccgt
      781 tctttatgat agcgttaata gaaaagatag atggcttcca gaaaactgga atatctatgg
      841 ttctgtcacc ttatctgaac gatttgtttt tgttttatcg ttgaattatt ttgaaggtgt
      901 ttttccgtcc agtctaaatt agtttatggg tctccccaac ttcttcgata ttatcataca
      961 ttaaattttg agagttgtca agagtggaac gctaccatga tatccctgct acaatagtaa
     1021 agcaaggagg aaaatgtgaa gaaaatcatc aagcgatatc aagaaaaagg ttctgttgtc
     1081 attggctacg cccgtgttag ttcaacagat aaccgccaag aactggggct agaagttcaa
     1141 aaagaagctc taaacttttg cgacaagctc tatatcgaaa aagaatcagg tggcaatcaa
     1201 gatagaccgc aacttcaaaa agctctcaag ctagccaaga agtgtgccga atgcggaata
     1261 gaaaccagct ttgtagtgta tagactagac cgtctaacta gaaaaatgct ccacctgtct
     1321 gctatcatct cggagctaac tagctataat atccgccttc aatctcttca cgaacaaatc
     1381 gaaacggatt cactaacagg taaattcttc tgccttatgc tgggctatgt ggcagaatgg
     1441 gagcttcaag ctatttcaga gcgcaccaaa gacggtctgc gtaaagccag agagcgtggg
     1501 ataaaattgg gaaacaaagg tatttcaaag tcgaaagaaa agcaagttat tataagttat
     1561 ttagaagaag aaatgaccgt ccgagacatc gccagcaagt tccaaatttc cactgct
//
LOCUS       DASGAC010000263         1599 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.266, whole genome shotgun sequence.
ACCESSION   DASGAC010000263 DASGAC010000000
VERSION     DASGAC010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1599
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.266"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..336
                     /locus_tag="U1335_002136"
     CDS             <1..336
                     /locus_tag="U1335_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000878125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HEM5232559.1"
                     /translation="DFPGAFSEADNLSEAIFNAREVLEIYTIMFEDEGKEFPKPSSFK
                     ALASNLASDDDVIQAISVDTELVRERERSKIVNKTVTLPSWLVEVGKENKINFSQLLQ
                     KAIREELQV"
     gene            537..1565
                     /locus_tag="U1335_002137"
     CDS             537..1565
                     /locus_tag="U1335_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016503195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid lyase"
                     /protein_id="HEM5232560.1"
                     /translation="MLHFENDYNKGAHPALLEALVASNQEGLSGYGTDKYTESAIEKI
                     RLATDCPHAQVTFLAGGTQTNQIVISSMLASYEGVIAADTGHIAVHEAGAIEFTGHKV
                     LALPHTDGKLVASEVENYISDFYADANHAHMVHPGMVYISHPTEYGTLYSKTELEDLS
                     KVCQQHNIPLFLDGARLGYGLAARETDLDLKTIAELTDVFYIGGTKLGALLGEALVFT
                     KNNQPKNFVSIVKHHGALLAKGRVTGVQFDCLFTDDLYLELGRHAIAMAEQLTQILEE
                     KGFQFYLKSPTNQQFVIVKNEELTRLTEVGIAYGFWEKYDDSHSIIRFATSWSTSQAD
                     IDALRNRL"
BASE COUNT          482 a          307 c          346 g          464 t
ORIGIN      
        1 gatttccctg gagcatttag cgaagctgac aatctaagcg aagctatttt caacgctcgt
       61 gaagttcttg aaatctatac catcatgttt gaagacgagg gtaaagaatt tcctaaacca
      121 tcatcattca aagcacttgc aagcaaccta gcgagcgatg acgatgtgat tcaggctatc
      181 tctgttgata ccgaacttgt ccgtgagcgt gaacgctcta aaattgtcaa taagaccgtc
      241 acactaccaa gctggcttgt cgaagttgga aaagaaaaca aaatcaattt tagccaacta
      301 ttgcaaaaag caatccgtga ggaattgcag gtataaaatt cttgccccaa attcgcccca
      361 aaagtttgta aaaacgagta tgaataggtc gaaaatgtag caaaaaattg cttaaattta
      421 catattttgg tatcatatca ctacatgatt ttctatcctg tcccctcagg gtggactaaa
      481 ttgaaaagcc tgcattaaca ggcttttttg ttatattata tcaaggaggt tatgatatgt
      541 tacattttga aaatgactat aacaaaggtg cccatcccgc cttgctggaa gccttagttg
      601 caagcaacca agaaggttta tctggatatg gcactgataa atatactgaa tctgctatcg
      661 aaaaaatcag acttgctacg gactgtcctc atgcacaagt tacgttttta gcaggtggca
      721 cgcagaccaa tcaaattgtc atttcgtcta tgttagcttc ctatgaagga gtcattgcag
      781 cggatactgg tcatattgca gttcatgaag cgggggcaat tgaatttaca ggccataagg
      841 tgttggcctt accgcatacg gatggcaaac ttgtcgcaag tgaagttgag aactatattt
      901 ccgatttcta cgcagatgct aatcatgctc acatggttca tccaggaatg gtttatattt
      961 cccacccgac tgaatatggt acgctttata gcaaaacaga gctagaagat ttgtccaaag
     1021 tttgccaaca gcataatatt ccgctctttt tagacggtgc tcgcttgggt tatggtcttg
     1081 ctgctcgtga aacggatctt gatttgaaga caattgcaga gctgacagat gttttctaca
     1141 ttggtggtac aaaactcggt gccttgctgg gggaagcttt ggtatttaca aagaacaacc
     1201 agcctaagaa tttcgtatcg attgtcaaac accatggtgc cttgttggcg aaagggagag
     1261 tgacaggtgt ccagtttgat tgcttattta ctgatgactt gtatcttgaa ttggggcgtc
     1321 atgctatcgc aatggcagag caactgaccc agattttgga agagaaaggc tttcaattct
     1381 atctcaaatc cccgaccaat cagcaatttg ttattgttaa gaatgaagaa ttgactagat
     1441 tgacagaagt tggaattgcc tatggcttct gggagaaata cgacgatagc cacagtatca
     1501 tccgctttgc gaccagctgg tcaactagtc aagcggatat tgatgcgtta aggaatagat
     1561 tataattaat aaaaaagaaa gggttagcct ttcttttta
//
LOCUS       DASGAC010000264         1597 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.267, whole genome shotgun sequence.
ACCESSION   DASGAC010000264 DASGAC010000000
VERSION     DASGAC010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.267"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            57..1481
                     /locus_tag="U1335_002138"
     CDS             57..1481
                     /locus_tag="U1335_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000199391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent glyceraldehyde-3-phosphate
                     dehydrogenase"
                     /protein_id="HEM5232561.1"
                     /translation="MKAYNNYINGSWVGSEKSIAIHSPINQEKLGTVPAMSKEEVDKA
                     MDAARKALPAWRALSAFERAQYLHKAANILEERKDAIGEILAKEVSKGIKASIGEVDR
                     SAHLIRFAAEEGLRVYGSSLEGGTYEPTAKSKVSLVRREPVGIVLAIAPYNYPVNLSA
                     SKIAPALIGGNVVMFKPPTQGSISGLLLAEAFADAGIPAGVFNTITGRGSEIGDYIIE
                     HPEVNFINFTGSTPIGQKVGKLAGIRPIMLELGGKDAAVVMEDADLDHTAKEIVSGAY
                     SYSGQRCTAIKRVLVMDSVADELAAKLKAEVEKLTVGDPFENKDITPVIDEQSAEFIE
                     GLVRDAQAKGATELTPYKREKNLIWPTLLDHVTSDMEIAWEEPFGPVLPIIRVSSLDE
                     MLELCNQSEYGLQSSIFTSNYPFAFDFASKLEVGTVHINAKTQRGPDNFPFLGVKGSG
                     AGVQGIRYSIEAMTKVKSVVFDVQ"
BASE COUNT          465 a          283 c          376 g          473 t
ORIGIN      
        1 tgcaaaattc atttcaatgt gttacaatta tcacattata ctcaaaggag gaaaaaatga
       61 aggcgtataa taattatatt aacggttctt gggttggatc agaaaaatca atcgcgattc
      121 actcaccgat taatcaagaa aaactaggta cagtacctgc tatgtcaaaa gaagaagttg
      181 ataaggcgat ggatgctgct agaaaggcat tgcccgcttg gcgtgccctt tcagcatttg
      241 aacgtgctca atatttgcat aaggcagcaa atattttgga agaacgcaaa gatgcaatcg
      301 gtgaaatttt agctaaagaa gtttcgaaag ggatcaaggc ttccatcggt gaagtggatc
      361 gttctgcaca tttgattcgt tttgctgcag aagaaggttt gcgtgtctat ggttcatctt
      421 tagagggtgg aacatacgag ccgactgcaa agtcaaaggt ttctttggtt cgtcgcgagc
      481 cggttggtat tgtattggcg attgcacctt ataactatcc tgtcaatttg tctgcttcaa
      541 aaattgctcc tgctttaatt ggtggtaacg tggtaatgtt taaaccacca acgcagggtt
      601 caatttctgg tctattgttg gcggaagctt ttgcagatgc tggtatccca gcgggtgtct
      661 ttaataccat tactggtcgc ggttcagaaa ttggtgacta catcattgaa catccagaag
      721 tgaacttcat caactttaca ggttccactc caattggtca aaaagttggt aaattagcag
      781 gcattcgtcc aattatgctt gaattgggtg gtaaggatgc agcagttgtt atggaagatg
      841 cggatttgga ccacactgca aaagaaattg taagtggtgc ctacagctat tcaggtcaac
      901 gttgtactgc tattaagcgt gttcttgtta tggattctgt agctgatgaa ttggctgcga
      961 agttgaaagc agaagttgag aaattgactg tcggtgatcc atttgagaac aaggacatta
     1021 cgccagttat tgacgaacaa tcagcagaat ttattgaagg tctggttaga gatgcacagg
     1081 ctaaaggtgc aactgaattg acaccataca aacgtgagaa aaacttgatt tggccaaccc
     1141 ttcttgacca tgttacatca gatatggaaa ttgcttggga agaaccattt ggaccagttc
     1201 ttccaattat tcgtgtttca tcattggatg aaatgttgga attgtgtaac caatctgagt
     1261 atggtcttca atcttctatc tttacaagca actatccatt tgcttttgat tttgcttcta
     1321 aattagaagt tggtacggtt catatcaatg ccaagaccca acgcggtcca gacaacttcc
     1381 cgttcttggg ggttaagggt tcaggagcag gtgttcaagg tatccgttat agtatcgaag
     1441 cgatgactaa agtgaagtca gtggtatttg acgttcaata aaataataag ggagtgggac
     1501 aaaactcggt aacccgcagg gttcgatgag tcgttagccc actcaaccac tgtgtcaagt
     1561 ttaactattg aaaaaactaa ggaggccagg acttttg
//
LOCUS       DASGAC010000265         1593 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.268, whole genome shotgun sequence.
ACCESSION   DASGAC010000265 DASGAC010000000
VERSION     DASGAC010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.268"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            128..976
                     /locus_tag="U1335_002139"
     CDS             128..976
                     /locus_tag="U1335_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosyl-l-methionine hydroxide
                     adenosyltransferase family protein"
                     /protein_id="HEM5232562.1"
                     /translation="MSNNLLVLQSDFGLVDGAVSAMIGVALQESRDLVVHHLTHDITP
                     YNIFEGSYRLFQTVEYWPEGTTFVSVVDPGVGSKRKSVVALTEQNHYIVTPDNGTLSF
                     IKKYVGIEAVREISEVANRRANTEHSYTFHGRDVYAYTGAKLASGHISFEEVGPELSV
                     DEIVEIPTVPTEVGSDYVKGAIDILDVRFGSLWTSITREEFYTLQPQFEDRFEVTIYN
                     NDMLVYQNQVTYGKSFADVRIGQPLIYINSLYRVGVAINQGSFAKAYNVGVGQNWHIE
                     IKRISN"
     gene            997..1545
                     /locus_tag="U1335_002140"
     CDS             997..1545
                     /locus_tag="U1335_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF-type riboflavin transporter
                     substrate-binding protein"
                     /protein_id="HEM5232563.1"
                     /translation="MKNNSIKTVVATGIGAALFVVIGLLISIPTFVPNTYIQLQYAVQ
                     SLLSIVFGPIVGFFVGLIGHAFIDALRGGSPWWSWVLASAVFGLVLGFARNRLRIQEG
                     IFDGKDIFAFNIFQAVANLIAWGVIAPVLDILIYSEAANKVFAQGLVAGIANSITVAI
                     AGTLLLAVYAKSQTKIGSLSKD"
BASE COUNT          441 a          270 c          360 g          522 t
ORIGIN      
        1 agatgtaaat aagttgttct aaaaaaatta gctataaggc gaaactatag cattgtttag
       61 gaaaaagcta tttgaaagct tctatctttt ctgatatgat agagtggtat tatttttagg
      121 aggagctatg tcgaataatt tacttgtttt acaatcagat tttggtttag ttgatggtgc
      181 agtttcagcg atgattggtg ttgctctcca agaatcgaga gatttagttg ttcaccatct
      241 aactcatgat attactccgt acaatatctt tgagggttca tatcgcctct ttcaaacggt
      301 cgaatactgg ccggagggga caacatttgt ttcggttgtc gacccaggag ttggttcaaa
      361 acgtaagagt gtagtagctt tgaccgaaca aaatcactac attgtaacgc ctgataatgg
      421 gacgctatcc ttcatcaaaa aatatgtggg gatagaggcg gttcgagaaa tttcagaggt
      481 ggccaatcgc cgtgccaata cagaacattc gtacaccttc catggtcgag atgtttatgc
      541 ctatacggga gctaaattgg cttctggaca cattagcttt gaagaagttg gtccagaatt
      601 aagtgtggat gagattgtgg aaattccaac agtcccaacg gaagttggtt cggactatgt
      661 aaaaggtgca attgatattc tggatgttcg attcggctcg ctttggacct cgattacgag
      721 ggaagaattt tacaccttgc aaccgcagtt tgaagatcgc tttgaagtga ccatatacaa
      781 taacgatatg cttgtgtatc aaaaccaagt aacctatggc aagtcctttg cggatgtacg
      841 tatcggacag ccattgattt atatcaattc cctctatcgt gtaggtgttg cgattaatca
      901 gggctcattt gccaaggctt ataatgtcgg tgtaggtcaa aactggcata ttgaaatcaa
      961 acgtattagt aattaaagaa attttaggag atagttatga aaaataattc aatcaaaaca
     1021 gtcgttgcta ctggtatcgg cgcagccctc tttgtagtta ttggtttgct gattagtatt
     1081 ccaacctttg taccaaatac ctacattcaa ttgcagtatg cagttcagtc gctcttgtca
     1141 attgtttttg gaccaattgt tggtttcttt gtagggctta ttggtcatgc ctttatagac
     1201 gcactgcgag gtggatcgcc ttggtggtca tgggttctag cctcagcagt tttcggcttg
     1261 gtgttaggtt ttgctagaaa tcgtctgcgt attcaagaag gaatttttga cggaaaagat
     1321 atttttgctt tcaatatttt tcaagcagta gctaacctca ttgcttgggg agtcattgcc
     1381 ccagttttag atattcttat ctatagtgag gcggcgaata aggtctttgc acagggactt
     1441 gtggcaggta ttgcaaatag tattacagtt gctattgcag ggacactcct tttggctgtt
     1501 tatgcaaaat ctcaaacgaa gataggtagt ttgtctaaag attaagtttt tattttccct
     1561 agaaaaaatt ctagggtttt ttcaatacca aaa
//
LOCUS       DASGAC010000266         1586 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.269, whole genome shotgun sequence.
ACCESSION   DASGAC010000266 DASGAC010000000
VERSION     DASGAC010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1586)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1586)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1586
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.269"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            52..1080
                     /gene="queA"
                     /locus_tag="U1335_002141"
     CDS             52..1080
                     /gene="queA"
                     /locus_tag="U1335_002141"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEM5232564.1"
                     /translation="MNTADFDFDLPEELIAQVPLEKRDSSKLLILDREKRSMVDSHFD
                     HIIDQLNPGDALVMNNTRVLPARLYGYKPETMGHVELLLLKNTQGDQWEVLAKPAKRL
                     KVGTTVAFGDGRLTATIVEELEHGGRIVEFSYEGIFLEVLESLGEMPLPPYIHEKLED
                     RERYQTVYAKENGSAAAPTAGLHFTQELLEKIEAKGVKLVYLTLHVGLGTFRPVSVDN
                     VDEHEMHSEFYNLSAEAAQTLNQVKDSGGRIVAVGTTSIRTLETIGNKFDGRLEADSG
                     WTNIFIKPGYTFRIVDAFSTNFHLPKSTLVMLVSAFAGREFTLDAYKHAVEERYRFFS
                     FGDAMFIQ"
     gene            1144..>1586
                     /locus_tag="U1335_002142"
     CDS             1144..>1586
                     /locus_tag="U1335_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012130653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HEM5232565.1"
                     /translation="MNKIESRHQLILSLIMEKKIHTQQELQELLEVNGVSVTQSTLSR
                     DIKMLNLVKVNEDDSSHYVINPIAPTRWEKRLRLYMEDALVMLKPIQHQVVLKTLPGL
                     ANSFGSILDAMEIPQIVATVCGDDVCLIICEDVEGAQACFEHLKQ"
BASE COUNT          444 a          370 c          324 g          448 t
ORIGIN      
        1 tgccctattg atttatttta cctatatttt attttagtct aaggagtgaa tatgaatact
       61 gcagattttg attttgattt acccgaagag cttatcgctc aagttcccct tgaaaagcgc
      121 gacagctcta aactattgat cctcgaccgc gaaaaacgga gcatggttga cagtcacttt
      181 gaccatatca tcgaccaact aaatcccggt gatgctctgg tcatgaacaa tacacgtgtt
      241 ctgcctgccc gtctctatgg ctacaagcct gaaactatgg gacatgttga gcttttgctt
      301 ttgaaaaata cccaaggtga tcagtgggaa gttcttgcca aaccagcaaa acgtctgaag
      361 gtcggtacca cagtcgcttt tggtgacgga cgattaactg ctactatcgt agaagaatta
      421 gaacacggtg gaagaattgt tgaattctcc tatgaaggta tcttccttga agtcttggaa
      481 agtctaggcg aaatgccact tccaccttac attcatgaga aattagaaga ccgtgaacgc
      541 tatcaaacag tttatgccaa ggaaaacggt tctgccgcag ccccaactgc tggactacat
      601 ttcacccaag aattactcga aaaaatcgaa gctaaaggag tgaagctagt ctatttgact
      661 cttcacgttg ggctcgggac cttccgacca gtctctgttg ataacgttga tgaacatgaa
      721 atgcactcgg aattctataa cctatcagca gaagctgctc aaaccctcaa tcaggtcaaa
      781 gatagcggtg gtcgtatcgt cgcagtcggc acgacatcca tccgcaccct cgaaaccatc
      841 ggtaataaat ttgatggccg tttggaagct gattctggtt ggacaaatat cttcatcaaa
      901 cctggctaca ccttccgaat cgttgatgcc ttctcaacca atttccacct gccaaaatct
      961 actttggtta tgctagtttc tgcctttgca ggtagagaat ttaccttaga tgcctataaa
     1021 catgctgttg aagaacgtta ccgcttcttt agttttgggg atgcaatgtt tattcaatag
     1081 gctgttatca ccaatttatt ctgagttcag attttatttt ccttacatct caaggagggc
     1141 cctatgaaca agattgaaag ccgccatcag ctgatcctat ctctaatcat ggagaagaaa
     1201 atacataccc agcaggaatt gcaagaatta ctagaggtca acggagtctc cgtcacccaa
     1261 tctaccctct cccgtgacat caagatgctc aatcttgtca aagtcaacga agatgattct
     1321 tctcactatg tcatcaaccc cattgctcct actcgctggg aaaaacgact gcgactctat
     1381 atggaagatg ctttggtcat gctaaaacct atccaacatc aagtggtact caagacacta
     1441 cctggattgg ccaactcatt cggttctatt ttggatgcca tggagattcc tcaaattgta
     1501 gcgaccgtct gcggtgacga tgtctgtctc atcatttgtg aagatgtcga gggggcacaa
     1561 gcttgcttcg agcacttgaa acagtt
//
LOCUS       DASGAC010000267         1562 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.270, whole genome shotgun sequence.
ACCESSION   DASGAC010000267 DASGAC010000000
VERSION     DASGAC010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1562
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.270"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(131..>1562)
                     /locus_tag="U1335_002143"
     CDS             complement(131..>1562)
                     /locus_tag="U1335_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEM5232566.1"
                     /translation="GTTVSTEIMAGLTTFFAMSYILFVNPSVLSVAGMPTQAVFLATI
                     IASAVSTLVMGLFANVPYALAPGMGLNAFFTYTVVIGLGFTWQEALAMVFLCGLFNVF
                     ITVTKVRKSIIKAIPISLQHAIGGGIGVFVAYLGFKNSNLITFLTSGSDIITVNGVAP
                     AEATAETFSNGVFSVLAGGGVVPSISTFTDPSVLLTVFGLLLTAVLVIKNVRGAILIG
                     IIATTVAGIPAGVVDLFTIDFANNNIGTAFAELGTTFLAAFDGLSSLFADSSRLPLVL
                     MTIFAFSLSDTFDTLGTFIGTGRKTGIFSEEDEKALENGTGFNSKMDKALFADAIGTS
                     IGALFGTSNTTTYVESAAGISAGGRTGLTAVTTAVLFLLSILILPFIGIVPAAATAPA
                     LIIVGVMMVSSFLDVDWSQFEDALPAFFAAFFMALCFSISYGIAAAFIFYCLVKVSTG
                     KAKEIHPILWGATALFILNFIILAIL"
BASE COUNT          551 a          346 c          312 g          353 t
ORIGIN      
        1 tccatccgtt ttcaatttac aatattcaat acagcattct gctgaataaa tcacattgat
       61 tcccatatat tttaatcgta aataaaaaac tgaccttcaa atgaagatca gttcaaggat
      121 aataaacaga ttacaagatg gctagaatga taaaattcag aataaataga gctgtggcac
      181 cccaaaggat tggatgaatt tctttagcct tacctgtcga aacttttacc aagcaataga
      241 agataaaggc tgctgcaata ccgtaagaga tagagaagca aagtgccatg aagaaggctg
      301 caaagaaggc tggaagggca tcttcaaact ggctccaatc aacatccaag aaggatgaaa
      361 ccatcatcac acctacgata atcaaggctg gagccgttgc agcagctggc acaataccga
      421 taaatggcaa gataagaatt gaaagaagga agagaactgc tgttgtaaca gctgtcagac
      481 cagtacgacc acctgcagag atacccgctg ccgattcaac atatgttgtc gtatttgacg
      541 taccaaagag agcaccgatc gatgtaccga tagcatcagc aaagagcgcc ttgtccatct
      601 tagagttgaa cccagtacca ttttcaagag ctttctcatc ttcttctgag aaaataccag
      661 tcttacggcc tgtaccgata aaggtaccaa gtgtgtcaaa tgtatctgac aagctgaatg
      721 caaagatagt catcaaaaca agtggtagac ggcttgagtc agcaaagagc gaagatagac
      781 catcaaaagc cgctaggaaa gttgtaccaa gctccgcaaa ggctgtaccg atattgttat
      841 ttgcaaaatc gattgtaaac agatccacaa cacctgctgg aattccagct acagtcgttg
      901 caataatacc aatcaaaatt gctccacgca cgttcttaat aaccagaaca gctgtcaaaa
      961 gaagaccgaa cactgtcaag agaacacttg gatctgtaaa tgttgagata gatgggacta
     1021 caccacctcc cgccaaaaca gagaagacac catttgaaaa agtttctgct gtcgcttcag
     1081 caggtgcaac accattgaca gtgataatgt ctgatccaga agtcaggaaa gtaatcaggt
     1141 ttgaattttt aaaaccaaga taggcaacga aaaccccgat accaccaccg atggcatgtt
     1201 gcaagctaat cggaatcgcc ttgataatgc tcttacgcac cttggtaacg gtgataaaaa
     1261 cgttaaacaa accgcagagg aaaaccattg ccaaagcttc ttgccaagta aaaccaagac
     1321 caataaccac tgtataggta aagaaggcat tcaaccccat acctggtgcc aaggcgtaag
     1381 gtacgttagc aaataatccc ataacaagcg ttgatacagc actggcaatt attgtagcca
     1441 agaaaacagc ctgtgttggc atacctgcca cactcaatac gctcgggtta acaaacaaga
     1501 tatatgacat ggcaaagaaa gttgtaagtc ctgccataat ttccgtcgaa acagtcgttc
     1561 ct
//
LOCUS       DASGAC010000268         1525 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.271, whole genome shotgun sequence.
ACCESSION   DASGAC010000268 DASGAC010000000
VERSION     DASGAC010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1525)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.271"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(116..451)
                     /locus_tag="U1335_002144"
     CDS             complement(116..451)
                     /locus_tag="U1335_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase BlpT"
                     /protein_id="HEM5232567.1"
                     /translation="MEKTQIIQDVLALIQDLNRAFQADKVGTADEQRFQHNLTETTRI
                     LSEAESVTNRELIAIEKFYRSTSFLVGLGDLRLSETSRQAWQAFDRYYYQTIREELKL
                     YGGSAIAQV"
     gene            complement(674..>1525)
                     /locus_tag="U1335_002145"
     CDS             complement(674..>1525)
                     /locus_tag="U1335_002145"
                     /inference="COORDINATES: protein motif:HMM:NF013540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5232568.1"
                     /translation="FKQRRKELGLTQSALAKDICEQSLISRIENTNLSPSSEILFLLS
                     NRLGVTMNYFFEEFVQESRHSIGKIRTIFSQQLLLRNYEIVEQLYVKEVESRHLLNEE
                     DKAYLDYIFILVRFYLYNERDFAIKEFDRLNAIIAPHYYFYLDFLNSYTIFLGEVGED
                     DKYMELVSNVKSEVSKLDLSINADFQAYIKIGYNYARFLLKRKQTNLALDEVTELINQ
                     LNAYNSSFLLPDLLCLLGNISKGLLREDEVLDLYEQALVLYKLQGNTKLYLSLKNFLV
                     TMGKEIY"
BASE COUNT          474 a          310 c          220 g          521 t
ORIGIN      
        1 atcaatcatt gtagttcacc tctattctag tgtactactt tgattgatgt ttggttatga
       61 ttttcgtttt ctgaaaacga aattttcttc atgcgtttgg cgtgcttaac atctattata
      121 cttgggcaat ggcagagcca ccatagagtt tgagttcttc tctgatcgtt tggtagtaat
      181 agcgatcgaa ggcctgccaa gcctgcctgc tagtttcact caatcgcaga tcacccagtc
      241 caactagaaa actggtcgaa cgataaaatt tctcaatcgc aatcagttct ctattggtaa
      301 cagactcggc ctccgacaat atgcgtgtcg tctctgtcaa attatgttgg aaccgttgct
      361 catcagctgt tcctacttta tctgcttgaa aggcccgatt caagtcttga atgagggcca
      421 aaacgtcttg aataatctgt gtcttttcca taaaagaccc tccttgtttt tgatgaattt
      481 agtatatcaa attcaacaaa gatattcaag ttatttattt tttcataata ttaattcccc
      541 caggatcaaa tccatcagaa cttctcgtaa cggttcgttt aaggggaatg attactattg
      601 cgattgcgag aaacagacac acgaatttaa ttatccgttt catacatacc tcctttttga
      661 tataactaat ttttcaatat atttccttac ccattgttac taaaaaattc ttcaatgaca
      721 aatataactt ggtatttcct tgtaacttgt ataaaactag tgcctgctca tacagatcta
      781 aaacttcatc ttctctcaat aagcctttgc tgatattccc caacaaacat agtaaatctg
      841 gcaataaaaa actactatta taggcattca attggttgat cagttctgtc acttcatcta
      901 aagctaagtt cgtctgtttt cgttttagaa gaaatctagc ataattgtaa ccaatcttta
      961 tataggcttg aaagtcagca ttgattgata aatcaagctt actcacctct gattttacat
     1021 tgctgaccaa ctccatatat ttgtcatctt caccaacttc acctagaaaa atagtgtaac
     1081 tgttcaaaaa atctaaataa aaataataat gaggagcgat aatagcattt agtctatcaa
     1141 actcttttat cgcaaaatcc ctttcattgt ataagtaaaa tcgaaccaag ataaaaatat
     1201 aatctaaata agccttatct tcctcattca ataagtgcct gctttccacc tctttcacat
     1261 acaattgttc tacaatttca taatttctga gaagcaattg ttgggagaaa atagttcgta
     1321 tttttcctat actatgccta ctttcttgaa caaattcctc aaaaaaataa ttcatagtca
     1381 cacccagcct attagacagt agaaaaagga tttccgatga gggagaaagg ttggtatttt
     1441 caattctact aatcaaactc tgctcacaaa tatccttagc taaggcactc tgagtcagtc
     1501 caagttcttt tcttcgttgc ttaaa
//
LOCUS       DASGAC010000269         1508 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.272, whole genome shotgun sequence.
ACCESSION   DASGAC010000269 DASGAC010000000
VERSION     DASGAC010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.272"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..459
                     /gene="rlmH"
                     /locus_tag="U1335_002146"
     CDS             <1..459
                     /gene="rlmH"
                     /locus_tag="U1335_002146"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011680487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEM5232569.1"
                     /translation="VGKLKEKYLKEGIAEYSKRLGRFAKLDMIELPDEKTPDKASQAE
                     NEQILKKEADRIMSKIGERDFVIVLAIEGKQFPSEEFSQKISDIAVNGYSDITFIIGG
                     SLGLDSCIKKRANLLMSFGQLTLPHQLMKLVLIEQIYRAFMIQQGSPYHK"
     gene            484..1167
                     /locus_tag="U1335_002147"
     CDS             484..1167
                     /locus_tag="U1335_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1275 domain-containing protein"
                     /protein_id="HEM5232570.1"
                     /translation="MNQKDYRVFEGLRIACSLTFISGYLNAFTFVTQGGRFAGVQSGN
                     VISLAYFLAKGDFAQVVNFSIPILFFVFGQFFTYLARRYFEKQTWSWHFGSSVMMLVL
                     ILLTIILSPIMPASFTIASLAFVASIQVETFRRLRGAPYANVMMTGNVKNAAYLWFKG
                     VIEKDSELRKTGRNILLTIIGFMLGVIISTHLSFKFKEYALIGLILPVLYINYKLWQE
                     KRPTRGRSK"
     gene            complement(1165..1238)
                     /locus_tag="U1335_002148"
     tRNA            complement(1165..1238)
                     /locus_tag="U1335_002148"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1202..1204),aa:Arg,seq:tct)
     gene            1350..1421
                     /locus_tag="U1335_002149"
     tRNA            1350..1421
                     /locus_tag="U1335_002149"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1383..1385,aa:Glu,seq:ttc)
     gene            1427..1499
                     /locus_tag="U1335_002150"
     tRNA            1427..1499
                     /locus_tag="U1335_002150"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1460..1462,aa:Asn,seq:gtt)
BASE COUNT          475 a          247 c          304 g          482 t
ORIGIN      
        1 gttggaaaat tgaaagaaaa gtacctcaaa gaaggtattg cagaatatag taaacgattg
       61 ggacgatttg ctaagttgga tatgattgag cttcctgatg aaaaaacacc agataaagcc
      121 agtcaggcag agaatgaaca aatattaaaa aaagaagccg atagaattat gtctaaaatt
      181 ggagagcgag attttgtcat tgtcttagcg atagaaggca aacaatttcc atcggaagaa
      241 tttagtcaaa agatatctga cattgcagta aatgggtatt cagatataac ttttatcatc
      301 ggtggtagtt tgggtctcga ttcttgtatc aaaaaaagag ctaatttgtt gatgagtttt
      361 ggacagttga cacttcccca tcaactaatg aaattagttc tcatcgagca gatttatcgt
      421 gcatttatga ttcagcaggg aagcccatac cataagtagt ttcacgtgaa acaaggagtg
      481 aaaatgaatc aaaaagatta tcgtgttttt gagggattga gaattgcttg ttcattaacg
      541 tttatcagtg gttatttaaa tgcctttact tttgtgactc agggtggtcg ctttgctggc
      601 gtacaatctg gaaatgttat ttccctagct tattttttag ctaaaggtga ttttgcgcag
      661 gtagttaatt tttccattcc cattttattt tttgtattcg gacaattttt tacctactta
      721 gcaagaaggt attttgaaaa acaaacatgg tcttggcact ttggtagtag tgtaatgatg
      781 ttagttctta ttttactaac tatcattctc tcacctataa tgcctgcgtc ttttacaatt
      841 gctagtctag ccttcgtagc ctctattcaa gtagaaacat ttagaaggtt acgaggtgct
      901 ccgtatgcca atgtgatgat gacagggaat gtcaaaaatg ctgcttatct ctggtttaaa
      961 ggagttattg aaaaagattc agaacttaga aaaacaggta gaaacatctt attgactatt
     1021 atagggttta tgctaggtgt catcatatct actcacctat ccttcaaatt taaagaatat
     1081 gcccttattg gtctgatttt gccagtttta tatattaatt ataaattatg gcaagaaaaa
     1141 agacctactc gaggtaggtc caaatgattc cagcaggatt cgaacctgcg accgttcgct
     1201 tagaaggcga atgctctatc cagctgagct atggaacctt aaccatttta ttttacatta
     1261 aacaaagcac tctgtcaata caataaaaaa tcaaaaaatg tattgacaaa caaagtcaca
     1321 tgtattatac tagttattgt tctaaaaatg gtccgttggt caaggggtta agacaccgcc
     1381 ttttcacggc ggtaacacgg gttcgaatcc cgtacggact atttcttccg ccatagctca
     1441 gttggtagag cgcatgactg ttaatcatga tgtcacaggt tcgagccctg ttggcggagt
     1501 aaataaag
//
LOCUS       DASGAC010000270         1503 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.273, whole genome shotgun sequence.
ACCESSION   DASGAC010000270 DASGAC010000000
VERSION     DASGAC010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.273"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..1357
                     /locus_tag="U1335_002151"
     CDS             <1..1357
                     /locus_tag="U1335_002151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004252851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232571.1"
                     /translation="TQRYTFKDENGAYDLDDYLELMYRLFNDSYIEKNNMLYKAASSK
                     NYADTWLFLSIHFICALRTTDLVRLGHPRLPDKPEKILESIKKGKWRSVDARKTLLSI
                     TTRLTYLNITPNKTRSAGNVSQIKFHVPESCQVLIGTLLAIAEAHYQLENNNQENPLI
                     RKIYEYERITKYMGEEFGEFFLERNFSSRSANKSYLQAIAMLADDVLEEKSKLNIKGY
                     FLAALARSHKGSFDAFAQTTTLYLKDAQLGQLKPEMVAKELFERGVLSMVPSMLLTIV
                     TRGKYKELSPSQQTQMIKELNLTPSEIEKTLELSVRANTRATNALKMVVNQGLGSDQL
                     LTICHRIGNGEAFSKQAESMCLLSALGQLCPFDDRHHCVGCQYELQTKSTLLLLIGEF
                     NRLNRRYTEVTSDLEKGKIRSILEMQIKPCLEDMLQALSEQYGEDVLNDYEEIIKELV
                     S"
     gene            1357..>1503
                     /locus_tag="U1335_002152"
     CDS             1357..>1503
                     /locus_tag="U1335_002152"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232572.1"
                     /translation="MEQAKLFKAVETIVEEFDREFIDKAVEYFVDYVAKGIILTDDFD
                     CDVWK"
BASE COUNT          539 a          252 c          302 g          410 t
ORIGIN      
        1 gactcaacga tatactttta aagatgaaaa tggggcatac gacctagatg attatttgga
       61 gttaatgtat cgcttattca atgatagcta catcgagaaa aacaatatgc tgtataaggc
      121 tgcctcatct aaaaattatg ctgatacttg gctattccta tccatacatt ttatatgcgc
      181 tctcagaact acggatttag taagacttgg acatccccga ctacctgata agccagaaaa
      241 aatattagaa tccataaaga aagggaaatg gaggtcagtt gatgctagaa agacattatt
      301 aagtatcacg actagactga catatctaaa tattacaccc aataagacac gaagtgcagg
      361 caatgttagt caaataaagt tccatgttcc tgaaagttgt caagtcttaa taggtacgct
      421 tttagcaatt gccgaggcgc attatcaact ggaaaataac aatcaggaaa atcctttaat
      481 ccgcaaaata tacgaatatg agcgtatcac aaaatacatg ggagaagagt ttggagaatt
      541 tttcttggag cgaaacttca gtagcagatc ggcaaataaa tcttatctcc aggcgatagc
      601 tatgcttgct gacgatgttt tagaagaaaa atcaaagtta aatatcaaag gatatttctt
      661 agcagccctt gcaaggagtc acaagggatc tttcgatgca ttcgctcaaa caactacact
      721 atatcttaaa gatgctcaat taggacagtt aaaacctgaa atggtagcaa aagaactatt
      781 cgaaagagga gtattgtcaa tggtcccttc catgcttcta acaattgtaa ctagaggaaa
      841 gtacaaagag cttagcccaa gtcagcaaac tcaaatgatt aaagagctga atttaacacc
      901 ctcagaaata gaaaaaacgc ttgagttaag cgtgagagcc aatactagag cgacgaatgc
      961 attaaaaatg gtcgtcaatc aaggacttgg ttcggatcaa ttactaacta tttgtcatag
     1021 aatcgggaac ggagaagcat tctctaaaca ggcagagagt atgtgtttat tatctgcgct
     1081 tggccaattg tgcccctttg acgataggca ccactgtgta ggctgccaat atgaattgca
     1141 aacaaaatca actcttttgt tactcattgg cgagtttaac cgtcttaatc ggagatacac
     1201 agaagtaact agtgatcttg aaaaagggaa aataaggtcg attctagaaa tgcaaatcaa
     1261 accatgcctt gaagacatgt tacaggcact ctcagaacaa tatggtgaag atgttttaaa
     1321 tgactatgaa gaaataataa aggaactagt gagttgatgg aacaagcaaa actatttaaa
     1381 gccgttgaaa caattgttga agaattcgat cgagagttta tagataaggc tgtcgagtat
     1441 ttcgtagatt atgttgctaa aggaattatt ttaactgacg attttgattg tgatgtttgg
     1501 aaa
//
LOCUS       DASGAC010000271         1486 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.274, whole genome shotgun sequence.
ACCESSION   DASGAC010000271 DASGAC010000000
VERSION     DASGAC010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1486)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1486)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1486
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.274"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..1015
                     /locus_tag="U1335_002153"
     CDS             <1..1015
                     /locus_tag="U1335_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009754509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HEM5232573.1"
                     /translation="AEVGYLVTDEKIFIRFKKNADLFTDKASQFTNHFQAMLDLPLQD
                     IENNNTYCDYIFDRYPGTRLDFSSREVTNNIIKLSEKIFWEFSKPCHTLICGATNSGK
                     TYLSTMLILDYLKIKGKGGGCDIYVCDPKSADLSIICRRIDLKKYGEVRNLAVSDNEI
                     ARLLREVSAEMERRYSEWFTDDKQSFGKTWRDIDNAKPLVVIIDEFSAVLSVANPKVA
                     KEITGYFNSLLLKGRMVGIEMVLIMQRPDISSNSSSGLTGQQRDQFGVRIGMGNMTND
                     GRRMLFGNTEAEFQTVKEIGAGYIIIDGKHTKPVYFEAPLLPQNRGDYLDCLDRTILE
                     NMS"
BASE COUNT          512 a          212 c          301 g          461 t
ORIGIN      
        1 agcagaagtt ggttatttgg ttactgatga gaaaatcttt attcgattca aaaagaatgc
       61 tgatttattc acggacaaag caagccaatt tactaatcat tttcaagcaa tgctagattt
      121 acccttacaa gatattgaaa ataacaacac ttactgtgat tatatttttg accgttatcc
      181 tggtacaaga ttggactttt cttccagaga ggttacaaat aatattatta agctttcaga
      241 aaagattttc tgggaatttt caaagccttg tcatacacta atatgtggag caacaaattc
      301 agggaagact tacctttcaa caatgttaat tcttgactat ctgaaaatta aaggtaaagg
      361 tggaggttgt gacatttatg tttgtgaccc aaaatctgca gatttatcta tcatttgtcg
      421 aagaatagac ttgaagaaat atggggaggt tcgaaatctt gctgtgtcag ataatgaaat
      481 agcaagattg ctaagagaag ttagtgctga aatggagcgt aggtattctg aatggtttac
      541 tgatgataaa cagtcttttg gcaaaacttg gagagatatt gataatgcta agcctttagt
      601 tgttatcatt gatgaatttt cagcggtctt gtcagttgct aatcctaaag ttgcaaaaga
      661 gattactggt tatttcaata gcttacttct aaaagggcgt atggtgggga tagagatggt
      721 gctgataatg caacgaccag atatatcttc aaattcaagt agtggcttaa ctgggcaaca
      781 gagagaccaa tttggtgttc gtatcggtat gggcaatatg acaaatgacg gtcgcagaat
      841 gctttttgga aatactgaag ctgaatttca gactgtgaaa gaaattggtg ctggctatat
      901 cataattgat ggtaaacaca caaaacccgt ttattttgaa gcgcctttac ttccgcaaaa
      961 taggggggat tatctggatt gtttggatag aactattctt gaaaatatgt cctaatgtca
     1021 cgctaaaaag ttattgatga gcgaatgtct ttggcattcg agcggagcga ctatcaataa
     1081 ctttttaggg tcttcaaaat cggtacgatt ttgataattg gcttgttttt agttaaacaa
     1141 taagagattt tgaaaaatcg aaagcggggt tcttatggac gacgatagca aaggtttttc
     1201 aatacaacca gatgattttg taactgttac ccttatgaat gatatatacg agatacagta
     1261 tttacaaaaa tcaaatagac acaataatat tctgaagata gattctgacc gctatgttgt
     1321 aaaatcaaca ggggaaataa agtattatga gcatacagaa acaagaagcc aaagcataaa
     1381 ctcaatcaag caaactatga aaaaattaag atatcttatc aatgcgaatt tttcaggaca
     1441 aaagaacgaa ctttggtcaa ctttaacatt cagagatagc aatata
//
LOCUS       DASGAC010000272         1463 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.275, whole genome shotgun sequence.
ACCESSION   DASGAC010000272 DASGAC010000000
VERSION     DASGAC010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1463
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.275"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..1416
                     /locus_tag="U1335_002154"
     CDS             <1..1416
                     /locus_tag="U1335_002154"
                     /inference="COORDINATES: protein motif:HMM:NF013540.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002992300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEM5232574.1"
                     /translation="QQELSDLTGINRTMISKLEQGEYLPSIPQLLALSNVLEFEINSL
                     FVSDFPKLIRTIPAKKIAVAGTGYVGLSIAVLLAQHHQVTAVDIIQEKVDLINDRKSP
                     IQDDYIEKYLAEKDLNLVAMLDAEKAYKDAEIVVIAAPTNYDSAKNYFDTSHVEAVIQ
                     TVLSVNPQALMVIKSTIPVGFTQSVREKFGTENIIFSPEFLRESKALYDNLYPSRIIV
                     SCEDGAPDSVVEGSKLFASLLQEGALKKDVEVLHMGSTEAEAVKLFANTYLALRVSYF
                     NELDTYAELKGLDTESIIKGVGLDPRIGDHYNNPSFGYGGYCLPKDTKQLLANYNDIP
                     QNMMTAIVEANKTRKDFIADQVLKMAGYYDYSGHDSYSRQQEKEITVGVYRLTMKSNS
                     DNFRQSSIQGVMKRLKAKGAKVLIFEPTLEDGSTFFGSTIVNDLKKFKAQCQAIVANR
                     YDSSLDDVQDMVYTRDIFRRD"
BASE COUNT          456 a          243 c          315 g          449 t
ORIGIN      
        1 cagcaggaac tttctgattt gacaggaata aatcggacta tgattagtaa gttggagcaa
       61 ggggagtatc ttccttcgat tcctcagtta ctggctttga gcaatgtgct tgagtttgaa
      121 attaacagtt tatttgtttc tgattttccg aaattaatca gaaccattcc ggcaaaaaaa
      181 atcgccgtcg caggaacggg ctatgtcggt ctatccatcg ctgttttact agcccagcat
      241 catcaagtca cagctgtgga tattattcaa gaaaaagttg atttaattaa tgataggaaa
      301 tctccgattc aggatgatta tattgaaaaa tatctagctg aaaaagactt aaatttagtt
      361 gcaatgttag atgcagaaaa agcctacaaa gatgcagaaa ttgttgtgat tgctgctcca
      421 actaattatg atagtgctaa gaattacttc gatacaagtc atgtggaagc cgttatacaa
      481 acagtattat cggtcaatcc tcaagcatta atggtcatca aatcaacgat tcctgttggc
      541 tttacccaat ctgtgcgtga gaagtttggt acagaaaata ttattttcag tcctgaattt
      601 cttagagagt caaaagccct ttatgataat ctttatccat cacggattat tgtatcttgt
      661 gaagatggtg cgccagattc ggtagtagaa ggttcaaagt tatttgcttc tcttctacaa
      721 gagggggctt tgaagaaaga tgtggaagtg ttgcatatgg ggtctacaga agctgaagcg
      781 gttaagcttt ttgccaatac ctatttggcc ttgcgtgttt cttacttcaa tgaattggat
      841 acctatgcgg agttgaaagg gctggatacc gaatccatta tcaagggtgt tggcttagat
      901 ccacgtattg gtgaccacta caataaccct tcttttggct atggtggata ctgtctacca
      961 aaagatacaa agcagttact ggctaattac aatgatattc cgcagaacat gatgacagct
     1021 attgttgagg cgaataagac aaggaaagat ttcattgccg atcaagtatt gaagatggca
     1081 ggctattatg attattctgg gcatgatagc tattctcgcc agcaagagaa agaaatcact
     1141 gtcggtgtat accgattgac tatgaagagt aactctgaca actttagaca gagttccatt
     1201 caaggtgtta tgaagcgatt aaaagccaaa ggtgctaagg tgcttatttt tgaaccaaca
     1261 ttagaagatg gttcaacttt ctttggttca acaattgtca atgatttgaa aaaattcaaa
     1321 gcacagtgtc aagccattgt agcaaatcgt tatgatagtt ctttagacga tgtgcaggat
     1381 atggtttaca caagggatat ttttaggagg gattaaattt taattcgtaa ccgcccaata
     1441 acaaggtata ttgaaaaagg ctc
//
LOCUS       DASGAC010000273         1456 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.276, whole genome shotgun sequence.
ACCESSION   DASGAC010000273 DASGAC010000000
VERSION     DASGAC010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1456
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.276"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..1255
                     /locus_tag="U1335_002155"
     CDS             <1..1255
                     /locus_tag="U1335_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006154109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5232575.1"
                     /translation="SLYKHSLILGDNRIVTKQFIVLKHTDGSLQFTNFHRYVKTSSKI
                     KSISDDGNKRFSYVTKFLNYVFGEIKITSLDYLTLDMVREFLMHYGLGTLPGDTKHRK
                     KSTVEICVNTVLDFLTLYLDERKGKAMLTSKELYTTTSFTNKRGRLIKRKEPSFEVFY
                     DDSNTEQVIFRDMPNAAFEMLFAHIAKNHKDILMVVALGAFVGLRPSEACNVRREDSP
                     LGPGIIFHQSYGETFKVEIDLRKEIPLRSDLKPTGRIKKERMQAVSYIFLEVFVDTYN
                     DYMAYLEGQKYEKDYGPLNLNKQGKALTYDVYYQRFRKIIREEMIPIFLNSDDEEVVF
                     FGHLLQEHNISPHIFRHWYTTQLVLSGVNELSELMSARGDKSPESAWVYLQNKGEIAK
                     QYAQVNSGVFDYLSWRANDLFGGGK"
     gene            1255..>1456
                     /locus_tag="U1335_002156"
     CDS             1255..>1456
                     /locus_tag="U1335_002156"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232576.1"
                     /translation="MAVYLKEYLEKILNELEQNNQKTKEKVSQFILDNNWFSIKVDSS
                     NWSIDEADAAKLGQEIKNYLLKD"
BASE COUNT          489 a          230 c          315 g          422 t
ORIGIN      
        1 ttctctttac aaacattcat tgattctagg tgataatcgc atagtaacaa aacagtttat
       61 tgttctgaag cataccgatg gcagtttgca attcacaaat ttccatcggt atgttaagac
      121 ctcatccaag ataaagtcta tctcggatga tggtaataaa cgtttttctt atgtgacgaa
      181 atttttaaac tatgtcttcg gagagataaa aataacaagt ctagattact taacacttga
      241 tatggtgaga gagtttctga tgcattatgg cttaggaacc ttgcctggcg ataccaagca
      301 tagaaagaaa agtacagtgg agatttgtgt aaatactgta cttgattttt taacactcta
      361 tcttgatgaa cgaaaaggga aggcaatgct gacatctaag gagctctata cgactacctc
      421 ctttacaaat aagcgaggaa ggttaatcaa gcgtaaggag cctagttttg aggtatttta
      481 tgacgatagc aacactgaac aagtaatctt tcgtgacatg ccaaatgctg cctttgaaat
      541 gctctttgct catatcgcca aaaatcacaa agacatactc atggtagttg cactaggggc
      601 gtttgttggt ttacgaccat ctgaggcttg taatgtgaga agagaggata gcccgttagg
      661 tccaggtatt attttccatc aaagctacgg tgaaactttc aaagttgaaa tagacttaag
      721 aaaagaaatt cccctcagaa gcgatttaaa gcccacagga cgcatcaaga aggagcggat
      781 gcaagcagtc tcatatatct ttctagaagt gtttgtggac acctacaatg attatatggc
      841 gtatctggaa ggtcagaagt acgagaagga ctacggacca ctaaatttga acaagcaagg
      901 aaaggctctg acttatgatg tctattatca gcgtttccga aagattattc gagaagagat
      961 gatcccaata ttccttaact cagatgatga ggaagtcgtg tttttcggtc atttattaca
     1021 agagcataat atctcacctc atatcttcag acactggtac acaacgcagt tagttctttc
     1081 tggtgtgaat gagctaagtg agttgatgtc ggcaagaggt gacaaatctc cagaaagtgc
     1141 ttgggtgtat ttacaaaata aaggtgagat agctaaacag tatgcacaag ttaatagcgg
     1201 ggtgtttgat tatcttagtt ggagagcaaa tgatttattt ggaggaggaa agtagtggca
     1261 gtttatttaa aagaatattt ggaaaaaatt ctcaatgaac tggagcagaa caatcaaaaa
     1321 acaaaggaaa aagttagtca attcatatta gataacaatt ggtttagcat taaggtagat
     1381 tcttctaatt ggagtattga tgaagcagat gctgctaagt tagggcaaga aattaaaaac
     1441 tatttgttaa aagacg
//
LOCUS       DASGAC010000274         1444 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.277, whole genome shotgun sequence.
ACCESSION   DASGAC010000274 DASGAC010000000
VERSION     DASGAC010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1444
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.277"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(651..1253)
                     /locus_tag="U1335_002157"
     CDS             complement(651..1253)
                     /locus_tag="U1335_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012997947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEM5232577.1"
                     /translation="MSNFAKLQETRRSIYALGKDLPVSNEEVVALVEKAMKESPSAFN
                     SQSSRAVVLFGAESEAFWNEIAYSELEKVTPAEAFEATKGRLASFAAGAGTILFFEDQ
                     DVVKGLQESFPLYAENFPIWSEQAHGINLYAVWLAFAEKNIGMNVQHYNPLVDAQVAE
                     KYGIPANWKLRAQAPFGSIAAPAADKEYMADSDRVKVFGN"
BASE COUNT          425 a          298 c          277 g          444 t
ORIGIN      
        1 gtatttctgc tcactttaca acttgctttc ttgctcttat actctatcgc tacttagagc
       61 tggcggttca gaagcaattc acatgtactg aactcattga aaccttacgt tcgtacacct
      121 ttaagtatct gcctggtttt ggttatctac caaactacac tcggacggct attactgacc
      181 agctgcatca gacatttgga ttcagaagtg attatcaaat tattagcgaa aaaaagatga
      241 aaaaaatttt aaaatcatca aaatcgagaa aaagtacgca tttttgatat aaaaagaaaa
      301 cctctctaaa cccttgatat gcatagggtt agggaggttt ttgtcttgta aaactgtcaa
      361 agacgggatt gtatcatatt ttaagctaga cagataaaaa aacttcctgc tgatacagga
      421 agtctcagat tctatccgac agtcttacac tcacctggac agactgacaa cggatatttc
      481 caattttcgc agagtaaagt tttcagtttg catttagtac tagctctaac tatctgggag
      541 atagttagag gtgggagata aaacgaacag agttcgtgtc aacagccgca gacataactg
      601 gagttaggca aagcgagtta acgacgtaat aaagcaaact gtaaacttta ctagttacca
      661 aaaaccttta cacggtcaga atccgccatg tattctttat ctgctgctgg agctgcgatg
      721 cttccgaatg gtgcttgggc acgaagtttc cagttagctg ggataccgta tttttcagcc
      781 acttgtgcat caaccaatgg gttgtagtgt tgtacgttca taccgatatt tttctcagcg
      841 aaagccaacc atactgcgta caagttgata ccgtgagctt gttcagacca gattgggaag
      901 ttttcagcgt aaagcgggaa actctcttgc aagcctttga ccacgtcttg gtcttcgaag
      961 aacaagatag tacctgcacc tgctgcaaag ctagccaagc gaccttttgt agcttcaaac
     1021 gcttctgcag gtgttacttt ttccaattcg ctgtaggcaa tttcgttcca gaaagcttct
     1081 gactccgcac caaaaagtac cactgcacgg ctagattgtg agttgaaagc tgatggagat
     1141 tctttcatgg ctttctcaac aagtgctacc acttcttcat ttgatactgg caagtcttta
     1201 ccaagtgcgt agattgaacg gcgagtttct tgaagttttg caaagtttga catatagttt
     1261 cctcttttct atttgttact acatagtaac ttttatcact atgtagagat tatacatctt
     1321 tctaggaaaa ctgtcaagaa ctttgacttg tttttgaaat catttcttct ctatcagttc
     1381 caagcattaa gttcgaatat tgctaaagtt ttacaccaaa atcccacgcc aaacgcataa
     1441 agaa
//
LOCUS       DASGAC010000275         1426 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.278, whole genome shotgun sequence.
ACCESSION   DASGAC010000275 DASGAC010000000
VERSION     DASGAC010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1426
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.278"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..>1426)
                     /locus_tag="U1335_002158"
     CDS             complement(<1..>1426)
                     /locus_tag="U1335_002158"
                     /inference="COORDINATES: protein motif:HMM:NF025669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HEM5232578.1"
                     /translation="FDSLLPKTKDTPPLTFLQKEHLDEWSISNIIQSNQVDALTNIGV
                     IWNCNNCKGEYKCSPIDKLRIQCPYCDNKQMLKGFNTLQEKFPQFEVFWDDKNPNAFG
                     DYWQHSKETLSWICPCCNISFLSSPAALVARINPNGFNNLTCPNFCDWSSFIFKSTVF
                     SEKPIMLQEWSSKNEIAPEKALHHTATKKYIWDCSKCHGEYQCSIPIRKEVEVACPYC
                     RMETLKPDFNSIGQMYPEITNLWGSTNEKSPYDYLPNKSNRVHCYLYCPECNLEYQLS
                     LRELLDAYDYYGLKGLSKICLFCTQKLPIPGVNSLDILKPYLIEEWSSNNKLEMDKYF
                     ATSSQIVEWSCRNCKNLYKACINERYENDNACPYCNWIEILQGFNDLQTLYPQLEKEW
                     STKNSSQYNDYMPTSKYKAVWNCSVCQNEYEANICNRIKPNFECPFCSGKIILPLVDT
                     EHNLLKEWDYLNNILLADPKTLTRR"
BASE COUNT          431 a          233 c          233 g          529 t
ORIGIN      
        1 cgtctagtca atgtttttgg atctgcaagt aagatgttat ttaaataatc ccattctttt
       61 aaaagattat gttccgtatc tactaatgga agaataattt ttcctgaaca aaatggacac
      121 tcaaagttag gtttaattct gttacaaata tttgcttcat attcattttg gcatacacta
      181 caattccaaa ccgctttata tttgcttgtt ggcatgtaat cattgtattg tgagctattt
      241 tttgttgacc attctttttc gagttgcgga tacaatgttt gaaggtcatt gaaaccttgt
      301 agaatttcta tccagttgca atatggacac gcattatcat tttcatatcg ttcattgata
      361 cacgctttgt ataaattttt gcagtttcgg cagctccatt ctactatctg actacttgta
      421 gcaaagtatt tgtccatctc taatttattg tttgaactcc attcttcaat taaatatggt
      481 tttagaatgt caagtgagtt tacacctgga attgggagtt tttgtgtaca aaataggcat
      541 attttactta atccttttaa gccgtaataa tcatatgcat caagtaattc tctcaaagat
      601 aattgatact ctaggttaca ttcaggacaa tagagataac agtgaactcg atttgattta
      661 ttaggtaaat agtcatatgg tgacttttca tttgttgagc cccagagatt tgttatttcg
      721 ggatacattt gtccgatact gttgaaatct ggttttagtg tctccatacg acaatacgga
      781 catgcaactt caacttcttt tcggattgga atagaacact gatattctcc atgacatttt
      841 gaacaatccc aaatatactt ttttgttgct gtgtgatgga gtgctttttc aggagcaatt
      901 tcatttttag aactccactc ttgcaacatg attggctttt cggaaaaaac cgtacttttg
      961 aaaataaatg agctccaatc acaaaaattt gggcatgtta agttgttaaa accatttgga
     1021 tttattctag caactaatgc agcaggacta gataaaaatg aaatattaca gcaagggcaa
     1081 atccaagaaa gtgtttcttt cgaatgttgc caataatctc caaatgcatt tggattttta
     1141 tcatcccaaa atacttcaaa ttggggaaat ttttcttgca aagtattaaa accttttagc
     1201 atttgtttat tatcacaata gggacattga attcttaatt tgtcaatcgg ggagcatttg
     1261 tactcaccct tacaattatt acaattccaa atcactccaa tatttgttaa ggcatcgact
     1321 tgattactct gtatgatatt tgatatagac cattcatcca ggtgttcttt ttgtaaaaat
     1381 gttaatggag gagtatcttt agttttgggc aacaatgaat caaatg
//
LOCUS       DASGAC010000276         1410 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.279, whole genome shotgun sequence.
ACCESSION   DASGAC010000276 DASGAC010000000
VERSION     DASGAC010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1410
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.279"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(361..1410)
                     /locus_tag="U1335_002159"
                     /pseudo
     CDS             complement(361..1410)
                     /locus_tag="U1335_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612110.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
BASE COUNT          393 a          290 c          262 g          465 t
ORIGIN      
        1 attccatata cggggaatgc ggtggtcata gcggttttat ctatcggtat tttactcttc
       61 ttgctaggct atcgtttggt cgcctataag aaggacgaga aaaacaacta acccatcact
      121 atgttctgct agatacacct acctgaccca tttgtcagta ggtgtatttt tctggaaaaa
      181 agtataaccg cctaataaca aggtatcgta agcgcccaat aaccaggtat ctatccaata
      241 actcattcct ccagtatact gttataaaaa acaaactgga ggatttttta tgtcacagcc
      301 catcgtccca ttgactattc cccaatctcg ccgctttgag aagaaaagca gaaatgatgc
      361 ttattcgatt tcaaaatctg aataaaccca ttttctatgt acaatacttt ttagagtttc
      421 actatctaac tcttgaatga tttcttggag cttatcaatg actgactcca atgtttgaaa
      481 agctctgttc ttaaatccgc gtttgcggat ttctgcccaa acttgttcaa tcggattcat
      541 ctcaggggta tatggtggta tgaacgcaaa ttcaatatta tcaggaattt caagtgcctg
      601 agatttatgc caaattgcat tgtccatgac taaaacgatg tagtcatcgg gataagcttt
      661 tgataattga cgtaaaaatt cattcatcca agcggtatta caaccactag ctattatgaa
      721 gaaagattcc cctgtgtgtg catctgccgc accatagcag taacgaaatt ctcggatatg
      781 atggcttgag atattcggac ggtagttttt aggactccaa catgccccca gtttactaat
      841 ccgaccaaac cctgcttcat cttgatatat aagccgggtt tggttatagg aattttgctc
      901 aagaaaccgc ttacttgatt tttccttgta caaagatttt atttttagac gctaaaatcg
      961 tttcggcgtc tgctttcttt ggatgttctg gacgggggct aatttttgtt gcttactgcg
     1021 taagctttat ttcccgtctc aaagaatctc ttgattcttt gacccatcca tgacgtttca
     1081 atagttggta aaaaccatct ttagtcgtcg tacgaccaag tttatcttga taagctctat
     1141 agagggattc aactgttaca aactctccgt tgacagcaga cgctaactgc tcgctcaaaa
     1201 aagcttcttc ttcaactgtc atatgacctc ctctagcatc tgaggtaaga catgttcttg
     1261 atatttctta gtcaatctcc aaaccgtatc atgtgagaca tcaagcatat ccataatgga
     1321 tttgtaggga gtttggattg acctgagata aactgcttga atacgtttgt gataaggtgc
     1381 taagttttta tcttttggag ctgttttgag
//
LOCUS       DASGAC010000277         1409 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.280, whole genome shotgun sequence.
ACCESSION   DASGAC010000277 DASGAC010000000
VERSION     DASGAC010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1409
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.280"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            154..239
                     /locus_tag="U1335_002160"
     tRNA            154..239
                     /locus_tag="U1335_002160"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:188..190,aa:Leu,seq:aag)
     gene            474..1355
                     /locus_tag="U1335_002161"
     CDS             474..1355
                     /locus_tag="U1335_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001018994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphate aldolase"
                     /protein_id="HEM5232579.1"
                     /translation="MPLVSAEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKQAP
                     VLIQTSMGAAKYMGGYKVARNLIANLIESMNITVPVAIHLDHGHYEDALECIEVGYTS
                     IMFDGSHLPVEENLAKAKEVVELAHAKGISVEAEVGTIGGEEDGIVGSGELAPIEDAV
                     AMVATGIDFLAAGIGNIHGPYPANWEGLDLDHLRKLTEAVPGFPIVLHGGSGIPDAQI
                     QEAIKLGVAKVNVNTECQIAFANATRKFAAAYEANEAEYDKKKLFDPRKFLADGVKAI
                     QESVEERIDVFGSANKA"
BASE COUNT          461 a          252 c          320 g          376 t
ORIGIN      
        1 gtctagatgg ttttaagcat tatatatagt agaatattgc aaaagaatca gctaaatcaa
       61 tacgttttgg caaaaaaggt aaaaataaaa aataaaattc aaaaaaagtg ttgacaaggc
      121 tagttcctaa tgatatacta gttcttgtgt tgagcgggga tggcggaatt ggcagacgcg
      181 caggactaag gatcctgtga ccgctttagg tcgtgtgggt tcaagtccca ctctccgcat
      241 agtggactag ctaaggctag tccttttgct ttgtctagat aagtgcagag cacgatatat
      301 gctagttcat aaattacaag aatgatacga aacaggcatt attatggctt tcatgaaaag
      361 atatgtgaaa gttttctcaa aactagacgg tttcaactag cattttcaaa ataaaaatgg
      421 tagaatagag gagtatgagg tgcaacctca aaaaatatta ggaggctatc gaaatgccat
      481 tagtttcagc agaaaaattt gtccaagcag cgcgtgacaa cggttatgca gttggtggat
      541 ttaacacaaa caaccttgag tggactcaag ctatcttgcg tgcagcagaa gcaaaacaag
      601 ctccagttct tatccaaact tctatgggtg cagctaagta catgggtggt tacaaagtag
      661 ctcgtaactt gattgcaaac ttgattgaat caatgaacat tacagttcca gttgctattc
      721 accttgacca cggtcactac gaagatgcac ttgagtgtat cgaagttggt tacacttcta
      781 tcatgtttga tggttcacac cttccagtag aagaaaacct tgcaaaagca aaagaagttg
      841 tagaattggc gcacgctaaa ggtatctcag ttgaagctga agttggtact atcggtggtg
      901 aagaagatgg tatcgtaggt agcggtgaat tggctccaat tgaagacgca gtagcaatgg
      961 ttgcaactgg tattgacttc ttggcagcag gtatcggtaa catccacggt ccatacccag
     1021 caaactggga aggtcttgac cttgaccact tgcgtaaatt gactgaagct gtaccaggtt
     1081 tcccaatcgt attgcacggt ggttcaggta ttccagatgc acaaatccaa gaagcaatca
     1141 aattgggtgt tgctaaagtt aacgtaaaca ctgagtgcca aatcgcattt gcaaacgcaa
     1201 ctcgtaagtt tgcagcggct tatgaagcaa acgaagcaga atacgataag aaaaaactct
     1261 ttgacccacg taaattcttg gcagacggcg tgaaagctat ccaagaatct gttgaagaac
     1321 gtattgacgt atttggttca gcgaacaaag cttaatgtaa ctgcgaagaa atctcagatt
     1381 tcaagtaaac aaagtataag tttcttaga
//
LOCUS       DASGAC010000278         1383 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.281, whole genome shotgun sequence.
ACCESSION   DASGAC010000278 DASGAC010000000
VERSION     DASGAC010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1383
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.281"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            119..1123
                     /locus_tag="U1335_002162"
     CDS             119..1123
                     /locus_tag="U1335_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactonase family protein"
                     /protein_id="HEM5232580.1"
                     /translation="MTIYFGTYTKRESKGIYKANFDSETGQLSNLELVTEEPNPTYLA
                     FDKAGHLYSVGAENGLGGIAAFNADYTLLNHVVSEGAPLCYVAVDEARDLVYGSNYHK
                     GQLLVYKRLADGSLELADVAQHEGSGPHENQASAHVHFSDLTPDKFLVTCDLGCDQVV
                     TYKVSDQGKVEKIATYQAAPGSGPRHIVFHPVAKIAYLICELNSTIEVLIYDGWGQFE
                     HLQTVSTLPEDHTGFNGTAAIRITKDGKFIYGSNRGNDSIAVYKTLADASLELVEIVP
                     TNGKTPRDFTLSPDEKHLIVVHQDSDNATVFERDAENGCLTELSHDFYVPEAVCVTFL
                     "
     gene            1187..1371
                     /locus_tag="U1335_002163"
                     /pseudo
     CDS             1187..1371
                     /locus_tag="U1335_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011836777.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          427 a          279 c          271 g          406 t
ORIGIN      
        1 tttttttcta ttgtaacatg gagaaaggat ttttgtaaaa atcaactaca gaatttatac
       61 gactttctca gaaaaacatg gtataatttt atcaatcatt tccaaaaagg agaatcctat
      121 gactatctat ttcggtacct acacaaaacg tgaatccaaa ggaatttata aagcaaattt
      181 tgactctgaa acaggacaac ttagcaatct agaattggtc actgaagaac ctaaccctac
      241 ctaccttgcc tttgataagg ccggacatct atactccgtc ggcgctgaaa atggtctagg
      301 aggtatcgct gcctttaatg ctgactatac tctactcaac catgttgtat cagagggcgc
      361 accactttgc tatgtcgctg tagatgaagc aagagattta gtttatggct ccaattacca
      421 caaaggacaa ctacttgttt ataaacgttt ggcggatggt tcgctagaat tagctgatgt
      481 cgctcaacac gaaggatctg ggccgcacga aaatcaagct tccgcccacg ttcacttttc
      541 tgatttgacg cccgataaat ttttagtcac ctgtgattta ggatgtgatc aagtggtaac
      601 ctataaggta tctgaccaag gaaaagtaga gaaaatcgca acctatcagg ctgcgccagg
      661 aagtggtcca cgtcacattg tcttccatcc tgtcgcaaaa atcgcctatc tcatctgtga
      721 actaaattca actattgagg tgcttatcta tgacggctgg ggacaatttg aacacctaca
      781 aactgtctct actctcccag aagaccatac tggtttcaac ggtactgccg ctattcgcat
      841 cacaaaggat ggtaaattta tttatggatc caaccgcgga aacgactcta tcgcagtcta
      901 caaaacgctt gctgatgcca gcttagaatt agttgaaatc gtcccaacaa atgggaaaac
      961 tcctcgcgat ttcacgctta gtcctgatga aaagcatttg attgttgtcc atcaagattc
     1021 tgacaatgca actgtattcg aaagagatgc cgaaaatggc tgtttgactg agctttcaca
     1081 cgatttctat gttcctgaag cagtttgcgt tacattttta taagtcgttt cagttgtgaa
     1141 atccgtccag ttttggttta atagtttcat aggaggtgtt ttcaccatga atccagtaga
     1201 tctttttaac caagtaaaag aattgattgc aaacaaagac tttgatggtg caaaacaatt
     1261 tatcgaagaa aaaaggacca attcggtgaa tacttggaac aagcaaaagg cttgttatca
     1321 ggttctgaag gtgttaacgg tcttttagat aaagttaaag gcttgttcta atacatgtaa
     1381 aaa
//
LOCUS       DASGAC010000279         1367 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.282, whole genome shotgun sequence.
ACCESSION   DASGAC010000279 DASGAC010000000
VERSION     DASGAC010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1367
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.282"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(33..356)
                     /locus_tag="U1335_002164"
     CDS             complement(33..356)
                     /locus_tag="U1335_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232581.1"
                     /translation="MKRFLEVILEQVNIFLGNSKAPKSIEPDSKEDIKNNLELALYKK
                     AAVHVIYGDRSFTGDIVKYDTDRQRIIMKNFKRQVTSIIKIEDIKKVTLVPDSIKTSQ
                     QQTKG"
     gene            449..664
                     /locus_tag="U1335_002165"
     CDS             449..664
                     /locus_tag="U1335_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018167072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbC family protein"
                     /protein_id="HEM5232582.1"
                     /translation="MAEFTFEIEEKLLVLSENDKGWTKELNRVSFNGAPAKFDIRTWS
                     PDHTKMGKGITLSNEEFQVLLDAFANK"
     gene            complement(676..1215)
                     /locus_tag="U1335_002166"
     CDS             complement(676..1215)
                     /locus_tag="U1335_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HEM5232583.1"
                     /translation="MKTTSIKSLVYIAIGTALISTLSQISLSIGPVPFTLQTLAIGLV
                     ACLYNPKEAIASLTLYLTLGAIGLPVFAGFSGGFAPFTGPTAGFLLGFLLYTIITSAL
                     TKSTSSSVTVFFACLLGTASCFLIGCLVFKLVSGASWTDTIGWTVLPFILPDLAKITL
                     VMICHRLLQPVIKKEAYFS"
BASE COUNT          462 a          231 c          271 g          403 t
ORIGIN      
        1 ggactttttc ttcaatctgc aaggccgaaa tttcagcctt ttgtttgttg ttgagaagtc
       61 ttgatgctat ctggaaccaa ggtgactttt ttgatgtcct cgatttttat aatgctggta
      121 acctgacgtt tgaaattttt catgataatc cgttggcgat cggtatcata ttttacaatg
      181 tcacctgtga aactacgatc accatagatg acatggactg cagctttttt atataaagcc
      241 agctccaagt tattcttgat atcttccttg ctatctggct caatagactt aggagctttg
      301 ctattgccca aaaagatatt gacctgctct aaaataactt ccaaaaatct cttcatggca
      361 ttatcctttc aaacttgtta taattatagt atccaatttt cgcaaaaatg acaagttttt
      421 tcgaacaaat aagtgaagga ggtaacaaat ggcagaattt acatttgaaa ttgaagaaaa
      481 attattggtc ttatctgaaa atgataaggg ctggaccaag gagcttaatc gagtatcttt
      541 taatggagca ccagccaagt ttgatatccg aacctggagt cctgaccata ccaagatggg
      601 gaaaggaatt actcttagca atgaggaatt tcaagttcta ctcgatgcgt ttgctaataa
      661 ataaatgaag gaagcctaag aaaaataggc ttcttttttg ataacaggtt gcaataaacg
      721 atgacatatc atgactagtg taattttagc taaatcagga agaatgaaag gcagaacagt
      781 ccatccgata gtgtcagtcc aactcgctcc tgaaacaagc ttaaagacca aacagcctat
      841 aaggaagcaa cttgcagttc ctagtagaca ggcaaagaaa accgtcactg atgaggaagt
      901 tgacttagtg agggcagaag tgatgatagt gtagagtaga aaccccaata aaaagccagc
      961 tgtcggacca gtaaaaggtg caaatccacc tgaaaatcca gcaaagaccg gaagtccgat
     1021 agcgcctaga gttagatata gcgtcaaact tgcaattgct tccttcggat tatataaaca
     1081 agctactaag ccgatagcta gggtttgtaa tgtaaatggt acaggtccga tagacagact
     1141 gatttgtgaa agggtggaaa ttaaggctgt tccaatagcg atataaacaa gtgatttgat
     1201 agaagttgtt ttcatttgtt atcctcttaa aattttatgg ttaacaaaaa ttatagtgag
     1261 attggataag aaagtcaatg ctctttcatc ggatgtaaca actctatagg tgatttttat
     1321 aacagctaat aagaaactta tatagtaaaa aacaacaaat tatatgt
//
LOCUS       DASGAC010000280         1351 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.283, whole genome shotgun sequence.
ACCESSION   DASGAC010000280 DASGAC010000000
VERSION     DASGAC010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1351)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1351)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1351
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.283"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..1305
                     /locus_tag="U1335_002167"
     CDS             <1..1305
                     /locus_tag="U1335_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM5232584.1"
                     /translation="PPTPDETGVDTLIPYVQNGNVVVNYVDENGNVIKAPVNDETDAP
                     AGKSYDATDNKPTELVTEDGSRYVLIPSKTVGSETGTVEGGKTTEITYVYKKVANWIP
                     QIPGVPAGEEPKVPYPFDPENPDKPIDPTTPGTNGEVPSIPYVPGYTPVDPKTDKPLK
                     PIDPTDPSKGYVPPTPDETGVDTPIPYVQNGNVVVNYVDENGNVLKTPVNDETDAPAG
                     KSYDTTDNKPTEIVTEDGSRYVLIPSKTIGTENGTVEGGKTTEVTYVYRKVETPAKKV
                     VTNHVDEDGNPIAPQEEGTTPNKSIPGYEFTGKTVTDPDGNTTHIYRKVTKVVTNHVD
                     EDGNPIAPQEEGTTPNKSIPGYEFTGKTYTDGDGNTYHVYRKASNPVAPKPQAPVAPT
                     TAKAGAAQLPNTGEASSSAGVLGAAMLVAAIALAGKRRRNED"
BASE COUNT          468 a          307 c          285 g          291 t
ORIGIN      
        1 ccaccaacac cagacgaaac tggtgttgac acactaatcc cttacgttca aaatggtaac
       61 gttgtggtaa actatgtgga tgaaaacggc aatgtgatta aggcacctgt taacgacgaa
      121 acagatgctc cagcaggtaa gtcttatgac gcaactgaca acaagccaac agagcttgtt
      181 acagaagatg gttcacgtta tgtcttgatc ccatctaaga cagttggttc tgaaacaggt
      241 acagttgaag gtggtaagac aactgaaatc acttatgtgt ataagaaagt cgctaactgg
      301 atcccacaaa ttccaggtgt accagcagga gaagaaccaa aagttccata tccattcgat
      361 ccagaaaatc cagataaacc gatcgatcca acaacaccag gaacaaatgg agaagtacca
      421 tcaattccgt atgtaccagg atatacacca gtagatccta agacagacaa accgttgaaa
      481 ccgatcgatc caacagatcc atcgaaagga tacgtaccac caacaccaga cgaaactggt
      541 gttgacacac caatccctta cgttcaaaat ggtaacgttg tggtaaacta tgtggatgaa
      601 aatggcaatg tgcttaagac acctgttaac gacgaaacag acgctccagc aggtaagtct
      661 tatgacacaa ctgacaacaa gccaacagag attgttacag aagatggttc acgttatgtc
      721 ttgattccgt ctaagacaat tggtacagaa aacggtacag ttgaaggtgg taagacaact
      781 gaagtaacat acgtttaccg taaagtagaa acacctgcta agaaagttgt aacaaaccac
      841 gttgacgaag acggtaaccc aattgcaccg caagaagagg gtacaacacc taacaagtca
      901 atcccaggat acgagttcac aggtaagact gtaacagatc cagacggtaa cacaacacat
      961 atctaccgta aggtaactaa ggttgtaaca aaccacgttg acgaagacgg taacccaatt
     1021 gcaccgcaag aggaaggtac gacacctaac aagtcaatcc caggatacga gtttacaggt
     1081 aagacatata ctgatggtga tggtaataca tatcatgttt accgtaaggc aagcaaccct
     1141 gttgcaccaa aaccacaggc tcctgtagct ccaacaactg ctaaagctgg tgcggctcaa
     1201 ttgccaaaca ctggtgaagc ttcatcttca gctggcgtcc ttggtgcagc gatgctagtt
     1261 gccgcaatcg ctcttgcagg taaacgtcgt cgcaacgaag actaattatg tttctttata
     1321 cgaattcttc ccccgataga ataagtgaag a
//
LOCUS       DASGAC010000281         1335 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.284, whole genome shotgun sequence.
ACCESSION   DASGAC010000281 DASGAC010000000
VERSION     DASGAC010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.284"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..138)
                     /locus_tag="U1335_002168"
     CDS             complement(<1..138)
                     /locus_tag="U1335_002168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM5232585.1"
                     /translation="MFRGSGMGSTLVKLVIDDLANRNSKAFQIAVEEEKLGTWKLYKR
                     RI"
     gene            complement(330..623)
                     /gene="rpmA"
                     /locus_tag="U1335_002169"
     CDS             complement(330..623)
                     /gene="rpmA"
                     /locus_tag="U1335_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018376869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEM5232586.1"
                     /translation="MLNLNLANLQFMAHKKGGGSTSNGRDSQAKRLGAKAADGQTVSG
                     GSILYRQRGTKIYPGANVGRGGDDTLYAKVEGVVRFERKGRDKKQVSVYPIAK"
     gene            complement(670..984)
                     /gene="rplU"
                     /locus_tag="U1335_002170"
     CDS             complement(670..984)
                     /gene="rplU"
                     /locus_tag="U1335_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018374562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEM5232587.1"
                     /translation="MSTYAIIKTGGKQVKVEVGQAIYVEKLNVEAGQEVTFEEVVLVG
                     GEKTVVGTPLVAGATVVGTVEKQGKQKKVVTFKYKPKKGSHRKQGHRQPYTKVVINAI
                     NA"
     misc_feature    complement(1020..1195)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00559"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L21 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00559"
BASE COUNT          375 a          294 c          241 g          425 t
ORIGIN      
        1 tattcttctc ttatataact tccaggttcc caatttctct tcttcaactg caatttgaaa
       61 ggctttggaa tttctgttcg ccaaatcatc gatgactaat tttactaagg tggaacccat
      121 accgcttcct ctgaacattt catctactac tgaacgtaga acttataggc aacgtaacag
      181 tgcagatggc aaaatatttt tatcctatag agaagatatt gccgtcttga atcacttcta
      241 tcatacactt ttaaaaatag caaaatcaaa ttacaaaaaa gactctccga aaacaactcg
      301 gaaagcctat tgttaagcca ttttcagact tattttgcga ttgggtaaac agatacttgt
      361 ttcttatcgc gacctttacg ttcgaagcgt acaacgcctt ctactttagc gtaaagagtg
      421 tcatctccac cacgacctac gttagctcct gggtagattt ttgtaccacg ttggcggtaa
      481 aggattgaac cacctgatac agtttggccg tcagcagctt tcgcaccaag gcgtttcgct
      541 tgtgagtcac gaccgtttga cgttgaacct ccaccttttt tgtgggccat aaattgcaag
      601 ttagcaagat tcaagtttaa catatgttat tcctccgaat ttctgtaatg attgcttcaa
      661 gctacgcgat taagcgttga tagcgttgat aacaactttt gtgtaaggtt gacggtgacc
      721 ttgtttgcgg tggctacctt ttttaggttt gtacttgaag gtaacaactt ttttctgttt
      781 accttgtttt tcaacagtac caacaacagt agcgcctgct acgagtggag tacccacaac
      841 agttttctca ccaccaacaa gaactacttc ttcgaaagta acttcttgac ctgcttcaac
      901 gttcaatttt tcaacgtaga tagcttgacc gacttcaact ttaacttgtt tgccgccagt
      961 tttaatgatt gcatatgtgc tcattatgca cctcctatga tttttgggtc ttgcccgaat
     1021 tttatgtgaa gactcgccta gtaccgtggg acgaaccact ttatcttgct caataaaaat
     1081 taagttcaga ctaggcgacg cagacgcagg tagaacttag gttcaccaag ttaagtcaac
     1141 gacgtttgag cttaattttt gcagagcaac ggcattcgtg cggttgcaca ggaaatgtgc
     1201 atagtcaaca ctcctattat aacaaaaaca cctgcaaatg caagtgtttt gtatcatttt
     1261 tcttacattt caaaaactgc taaattccca aagtaagttc cagtctaacc caaaagctgg
     1321 aaattagact gagac
//
LOCUS       DASGAC010000282         1333 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.285, whole genome shotgun sequence.
ACCESSION   DASGAC010000282 DASGAC010000000
VERSION     DASGAC010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1333
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.285"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..>1333
                     /locus_tag="U1335_002171"
     CDS             <1..>1333
                     /locus_tag="U1335_002171"
                     /inference="COORDINATES: protein motif:HMM:TIGR04320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SEC10/PgrA surface exclusion domain-containing
                     protein"
                     /protein_id="HEM5232588.1"
                     /translation="TPTVETNTDTVVSATETTAVEAPKTSADVKPALDAQQAIVDATA
                     AEASQAQADADAADQAVATAEAEVATATQAVKDAEENLANATPENIAANQADQTANLA
                     DQTANATETDEVNAEIASQTQTVADAQVAVDTAQAEKDQADSAVTAAEADVKSAQDAL
                     SGTGLAEAQTNLDTASKAVTDAKANVDTATQAVEDAKKADAKRQEAIDAATTDVSVKT
                     DAVDTASSRVTAAQNNVASATEALAKANDAVTAATDALKNVDTLTISGPIEEFKNKLK
                     EHHTVKSKIMFDSQSHTPDELTELEAKKERLSAELTAMGAEIYNSYKLELAPNDEPFD
                     PNNLTYEQRLELSLFAAQIMNTLREKAGMTDHVVVSKRTIDEAQRQSDLHVEHYRTYN
                     KAFYGHKPLLSGYGENIGTWFVNVNKNATMNTAKRIITNLILSETFEDANS"
BASE COUNT          467 a          295 c          254 g          317 t
ORIGIN      
        1 taacaccaac agttgaaaca aatactgaca ctgttgtttc tgcaactgaa actacagctg
       61 tcgaagcacc taaaacatca gctgatgtca aaccagctct tgacgcacaa caagctattg
      121 ttgatgctac tgctgctgaa gctagccaag ctcaagctga tgcagatgca gctgaccaag
      181 ctgttgccac tgctgaagct gaagttgcga ctgcaaccca agctgtcaaa gatgccgaag
      241 aaaatttggc aaatgcaaca ccagaaaaca ttgcagctaa ccaagctgac caaactgcta
      301 accttgcaga ccaaactgct aacgctactg aaacagatga agtcaacgct gaaatcgcat
      361 cacaaacaca gacagttgct gacgcacaag ttgcggtcga tactgctcaa gcagaaaaag
      421 accaagctga tagcgccgtt actgctgctg aagctgatgt aaaatcggca caagatgcac
      481 tctcaggaac tggacttgct gaagctcaaa ctaaccttga tactgcaagc aaagctgtta
      541 cagatgctaa agctaacgtt gatactgcaa cccaagccgt tgaagacgct aagaaagctg
      601 acgctaaacg ccaagaagcg attgatgcag caaccactga tgtctctgtt aaaacagatg
      661 ctgttgatac tgcctcaagc cgtgttactg ccgcacaaaa caatgtagca tctgcaactg
      721 aagcacttgc taaagcaaat gatgctgtta ctgctgcaac tgatgcgttg aaaaatgtgg
      781 atactcttac aatttcaggt ccaattgagg aattcaaaaa taaactaaag gaacaccaca
      841 ctgttaaaag caaaattatg tttgattctc aatcccatac acctgatgaa ttgaccgaac
      901 ttgaagctaa aaaagagcga ttaagtgcag aattaactgc aatgggtgca gaaatttata
      961 acagttataa attggaacta gcaccaaatg atgaaccatt tgatccaaat aatctaacgt
     1021 atgaacaacg tctagaactc agcttgtttg cagcacaaat catgaacaca ctgcgtgaaa
     1081 aagctggaat gactgaccat gttgttgtct ctaaacgtac tattgatgaa gctcaacgtc
     1141 aatctgacct ccatgtggaa cactatcgta catacaataa agctttctat ggtcataaac
     1201 cccttctatc tggttacggt gaaaatattg gaacctggtt tgtaaatgtt aataaaaatg
     1261 caactatgaa tacagcaaaa cgtattatta ctaacttaat tttatcagaa acctttgaag
     1321 acgcaaattc ata
//
LOCUS       DASGAC010000283         1295 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.286, whole genome shotgun sequence.
ACCESSION   DASGAC010000283 DASGAC010000000
VERSION     DASGAC010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1295
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.286"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(357..1277)
                     /locus_tag="U1335_002172"
     CDS             complement(357..1277)
                     /locus_tag="U1335_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232589.1"
                     /translation="MVWTEEKLGPIIHSILNPDEEVLSLYQSKTTKSIYGCILWNSYY
                     YKVFRVSNHPSQSTYKQPTFYDFHGEFYMKGAIRTYLYHTNSWYELSKQSYYLLLFFQ
                     KLWDEKQEVEASWQNGRMQIRLVVEEEGWQVHYRFPDNQAREVERLLASGMLVAIRSS
                     RNFIKIRTSRFVAPYIALIKQRQLYRKKPSKAMLQWEKYQSQLIEIQRTYRLVEESAP
                     QTFFGHWLNKVQLYLCSAIASYWEEVIKGVEWQEAREIKEQRKAEKPHNPIEDKWKEN
                     IARRHKRKVDQLIGHDTLEKLRQLKTELDD"
BASE COUNT          334 a          296 c          256 g          409 t
ORIGIN      
        1 gcaaaaagac caacctcgct tctcaggggt cgtgtcaaca tctcagcgca gtggttgatt
       61 gggtttcaca gtccagtgga ctgtgaaagg ttggagatag gatttgcgaa gcaaatctca
      121 gtaattcgtg ttttacactc caaatctgac ctatacgact gatgcgaaca gagttcgctt
      181 catctccaac ctcaaactgt cccccagaca gtttgagctg tgcgggggtg ggagtgaaac
      241 agtctgggga tagactgttt cagctcaaca acttaaaacg aaaaattgtt gacgaactct
      301 ttttgaccag tcgagttctt tcccgctccc atttattgaa ggttcgctat aacttcttag
      361 tcgtctaatt ctgttttcag ttgtcggagt ttttccaagg tatcatgtcc gataagttgg
      421 tccacttttc gcttatggcg tctagcaata ttttccttcc atttatcttc aataggatta
      481 tgtggcttct cggctttcct ttgctctttg atttctcttg cctcctgcca ctccactcct
      541 ttaataactt cttcccaata gctggcaatg gcagagcaga gatagagttg gaccttattc
      601 aaccagtgtc caaaaaaagt ttgcggagca ctttcctcca ctagccgata ggtcctttgg
      661 atttcaataa gttgactttg gtatttttcc cactggagca tagctttact cggctttttt
      721 cgataaagtt gacgctgttt gattagagct atgtacggtg caacaaaacg actcgtccgt
      781 atcttgataa aatttctgga ggagcgaatg gccaccagca tgcctgaggc caataagcgt
      841 tcaacctccc ttgcctgatt atctggaaaa cggtaatgga cttgccaccc ctcttcttca
      901 accactaagc gaatctgcat tctaccattt tgccaactcg cctccacctc ttgcttttca
      961 tcccataact tttgaaaaaa gagaagaagg tagtagcttt gtttactaag ttcataccaa
     1021 ctgttcgtgt ggtaaaggta ggtccgaatc gctcctttca tataaaattc gccatggaaa
     1081 tcataaaaag ttggctgttt atatgtagat tgtgatgggt ggttactaac tcggaaaacc
     1141 ttataataat aactattcca aagaatgcag ccataaattg atttcgtcgt tttcgattga
     1201 taaagactta aaacttcctc gtcaggattg agtatagaat gaataatcgg tcccaacttt
     1261 tcttctgtcc agaccatact tctccccttg aacac
//
LOCUS       DASGAC010000284         1271 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.287, whole genome shotgun sequence.
ACCESSION   DASGAC010000284 DASGAC010000000
VERSION     DASGAC010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1271)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1271)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1271
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.287"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            300..>1271
                     /locus_tag="U1335_002173"
     CDS             300..>1271
                     /locus_tag="U1335_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006531610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEM5232590.1"
                     /translation="MKRKKAYIYTRVSTTMQVEGFSLDAQEAKIQQYANAFDIEIVKT
                     YQDAGKSGKTMLGRTEFMNMISDIEAEKDKVDYVLVFKLSRFGRNAADTLKSLAIMES
                     HGVNLICVDDGLDSSKDSGKLVITILSAVAEMERENIISQAMEGRRQKARAGQWNGGF
                     APVGYSLVNGQLQVNHEEAESVKMIFDLFANSDMGTIAIAKHLANLDIKKPIRHNSTL
                     PYFSSSGIARILDNPVYNGKIAFGRRESTRDKISGETKVTQSENYILTDGIHEAIIDD
                     ETWKKVRKKREANAHKYKRENPNKGDSIYILSGLIKCPLCNAGLYGNK"
BASE COUNT          445 a          186 c          269 g          371 t
ORIGIN      
        1 gaaggagttt atcatgaact tacatgattt acatttctac aagcaactac ttctgccttt
       61 tgtaatgagg aatcagagtc aaataatttc acttggaggt catctatgga tgaactagtg
      121 agatttttgg aagaaatgct tctgaaatat ggagacaaca ttgattgctc aaatttacca
      181 atcaaggaag aaaacctgta tactgatgag tagttgcttg tattcttttc taaaaagagt
      241 taaaataccc ttaagattat aagggtattt tttggtcaaa cttttcaagg agaaattaaa
      301 tgaagcgaaa gaaagcctat atctatacaa gggtatctac gactatgcag gttgaaggat
      361 tttcattaga tgctcaagaa gcaaaaattc agcaatatgc caatgctttt gatattgaga
      421 ttgtgaaaac ctatcaagac gctgggaaat ctggtaaaac catgttagga cgaacggaat
      481 ttatgaacat gatatcagac atcgaagcag agaaagataa ggtggactat gtacttgtat
      541 tcaaattatc acgttttggt cggaatgctg cggatacttt aaaatctcta gctattatgg
      601 aatctcatgg tgtaaatctg atttgcgttg atgatggact ggatagttca aaggattcag
      661 gaaagttagt tattacgatc ttgtcggcag ttgctgaaat ggaaagagag aatattattt
      721 ctcaagctat ggaaggtcgt agacaaaaag cgagagctgg tcaatggaat ggtggatttg
      781 cgcctgtagg atattccctt gttaatggtc aattacaagt aaatcatgaa gaagctgaat
      841 ccgtaaagat gatttttgat ttatttgcca acagtgatat gggcactata gctattgcca
      901 agcatttagc caacctagat ataaagaaac caattcgaca caatagtacg cttccatatt
      961 tttcatcaag tggcattgca agaatcttag acaatccagt ttacaatgga aaaattgctt
     1021 ttggacggcg tgaaagcact cgagataaaa tttctggtga aacgaaagtc acgcagtctg
     1081 aaaattatat tctaacagac ggaatccatg aagcaattat tgacgatgag acttggaaaa
     1141 aagtgaggaa aaaaagagaa gctaatgccc ataagtataa acgtgagaat ccaaacaagg
     1201 gcgattctat ctatatactt tcagggttga taaaatgtcc attatgcaat gctgggcttt
     1261 atggaaataa a
//
LOCUS       DASGAC010000285         1269 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.288, whole genome shotgun sequence.
ACCESSION   DASGAC010000285 DASGAC010000000
VERSION     DASGAC010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1269)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1269)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1269
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.288"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..1227
                     /locus_tag="U1335_002174"
     CDS             <1..1227
                     /locus_tag="U1335_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001019353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5232591.1"
                     /translation="LKQTKKNGEVRYVVRGVYLGTDEKTGKQVTTSITAKTLRQLDRQ
                     YVQVKIDFENGGSTRKEIVTVATLSDLAEEWFNNYKSWVTSENTLNRVRGYLDTYIIP
                     RFGDYLPAKIEPAEIQSWVNELAEKSKKSVESGIRRSEKGSAKDFGAVIHKLSDIFNF
                     GITNYGLKRNPASTITIPPKPKATKKKIMVLHDEDLTVWLNFLSELPNTRANRRFKII
                     CNTLLASALRINELLALDIHDLNIETNEIIVNKTLVWKKANKKLGTKGEIICKPTPKT
                     DAGNRQVAVPKNVIEDLINFHLEMNDYFIKHGLPESDHIFPTIYGNYMCDRNERTTLK
                     KRLDLVGLPEYGFHLFRHTHASMMLNAGANWKELQIRLGHKSISTTMDTYAELAPKKK
                     FEAVSLFQAKLDELTA"
BASE COUNT          475 a          205 c          231 g          358 t
ORIGIN      
        1 cttaagcaaa ctaaaaaaaa tggagaagta aggtatgtag taaggggagt ttatttagga
       61 actgatgaaa aaacaggaaa gcaagttact acttccatca cggcaaaaac tcttcgacaa
      121 ttagatagac aatatgtgca agtgaaaatt gattttgaaa atggaggaag cactcgaaaa
      181 gaaattgtta cggtagcaac cctgtctgat ttagcagaag aatggttcaa taattataaa
      241 agttgggtaa cttcagaaaa cacattaaat cgtgttcgag gatatttaga tacgtacatt
      301 atcccacgat ttggcgatta tctgccagca aaaattgaac ctgcagaaat tcaaagttgg
      361 gtaaatgagc tagccgaaaa atctaaaaaa tctgttgaat ctgggataag gagatctgaa
      421 aaaggtagcg caaaggactt cggagctgta attcataaac taagcgatat ttttaatttt
      481 ggtattacaa attatggact gaagagaaat cccgcttcga caattactat tcctccaaaa
      541 ccaaaggcaa cgaagaaaaa gattatggta cttcacgatg aagatctaac ggtatggctg
      601 aactttctat ctgaattacc caatacacgt gccaatcgtc gttttaaaat tatttgcaat
      661 acccttcttg ctagtgcact tcgtattaat gaattgttag cgttggatat tcacgattta
      721 aacattgaaa ccaacgagat tattgtcaat aaaacgcttg tatggaaaaa agctaacaaa
      781 aaattaggta cgaaaggtga aataatttgt aaaccaacac ccaaaaccga tgcaggaaat
      841 agacaagtag ctgtgcctaa aaatgtcatt gaagacttaa ttaatttcca tttagaaatg
      901 aacgactatt ttataaagca cggacttccc gagtcagatc atatatttcc tacgatttac
      961 ggaaattata tgtgtgatag aaatgagcgg actacactaa aaaaacgctt agatttggtg
     1021 ggtttaccag aatatggttt tcatctattt cgtcataccc acgcatctat gatgcttaat
     1081 gcgggtgcaa attggaaaga attgcaaatt cgattaggac ataaatcaat ttcaacaaca
     1141 atggatacct atgcagaatt ggctccaaag aaaaaatttg aagctgttag tctattccaa
     1201 gcaaaacttg acgaactaac tgcataacaa attaatcact acatttttct ctacatattt
     1261 ttttaatat
//
LOCUS       DASGAC010000286         1262 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.289, whole genome shotgun sequence.
ACCESSION   DASGAC010000286 DASGAC010000000
VERSION     DASGAC010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1262)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1262)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1262
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.289"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            411..>1262
                     /locus_tag="U1335_002175"
     CDS             411..>1262
                     /locus_tag="U1335_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002987985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
                     /protein_id="HEM5232592.1"
                     /translation="MNHLLYTAKSHHLQWNVRQLSQICHHFYHNYCPDSFKYRRNVGL
                     VKVSDKSILVLLLLQAELGMTSQRHFYSICHLFPCGQLLERSRFNRRSKQLIWLVQLI
                     RKAMREMLPSDKLAIIDRFPLPLCQPVRNHRVTIFKGLADIGYNTSKHLWFYGFKVHL
                     LVTLSGYILNYVVTPASVHDIKVVYELLEGCKQSVTLGDLGYLSSELKKDLEQEGYPL
                     WTPFRKNMTGPEEHNNWKVMAMRRTIETRFSELCRLFDIEHTLARSLAGLQLRIEQII
                     LAHNLRYF"
BASE COUNT          406 a          256 c          224 g          376 t
ORIGIN      
        1 tcaacaactg atagttgtac ttgacttaaa aataataacc tctttcaagg ctaagttccc
       61 agatcattga caattaaata aaaagtgcgt ctgacaacca gaggactgac gatcaaacta
      121 cactaaactt cgtaccttta ttgtaattgt tttgataaga aaagtcaagt ccgttgatgg
      181 ttgaagtgaa gattttaaaa ccgttgaaaa aacagattaa cgtagcacat tcaacaaaca
      241 ctccgctagt tttagatgaa gaaatactta gtcttataaa tgctaaattt gtttcgaaag
      301 aaaatagatc gcgtttctga atacccgtgg tgctagttca tttcaaacta caacaaaaag
      361 cccaaatgga ctatactgta agtgacgaaa catacaggag gttagtccaa atgaaccact
      421 tactgtatac tgctaaatct catcatttgc aatggaatgt acgccaatta tcacaaattt
      481 gtcatcactt ctaccacaac tattgcccag attccttcaa atatcggcgt aatgttggct
      541 tagttaaagt ttcagataaa tcaatccttg tcttactttt gttacaagct gaactaggta
      601 tgacatcaca gcgccatttc tacagcatct gccacctctt cccttgcggt cagttactag
      661 aaagaagccg tttcaatcgt cggtcaaaac aattgatttg gctagtccaa ttaatccgaa
      721 aagctatgag agaaatgctt ccatctgata aactagccat tatagatagg tttcctttgc
      781 cactttgcca acctgttcgc aatcacagag ttaccatttt taaaggatta gccgatattg
      841 gctacaacac ctctaaacat ctttggttct acggcttcaa ggttcatctg ctagtgacct
      901 tatctggtta tattttgaac tatgttgtca cgccagcctc tgttcatgac atcaaggtgg
      961 tttatgagct attagagggg tgtaagcaat cggttacctt aggtgattta ggctacctaa
     1021 gtagtgaact caaaaaggac ttagagcaag aaggttaccc tctatggacg ccgtttcgta
     1081 aaaacatgac agggcccgaa gaacataaca attggaaagt aatggccatg agacgaacta
     1141 ttgaaacacg tttttctgaa ctgtgtcgtc tctttgacat cgaacataca ttagctagaa
     1201 gcctagctgg actacagtta cgaattgaac aaattattct agctcataac ttacgctatt
     1261 tt
//
LOCUS       DASGAC010000287         1259 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.290, whole genome shotgun sequence.
ACCESSION   DASGAC010000287 DASGAC010000000
VERSION     DASGAC010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1259
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.290"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            139..828
                     /locus_tag="U1335_002176"
     CDS             139..828
                     /locus_tag="U1335_002176"
                     /inference="COORDINATES: protein motif:HMM:NF017691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excalibur calcium-binding domain-containing
                     protein"
                     /protein_id="HEM5232593.1"
                     /translation="MKLKTFVISLATLFIGASIQTSVSADTPIYRLYNRQNGEHLYTT
                     DANEKDVLYNQHGWGYEGIGWNAPDTGTPVYRLYNAGLQNHLYTSDTNEVAVLTSKHG
                     WTSDNNGQPVFYSGGTVPIYRVYNFKLRGLHHWTTDLNEYNVLPSHGWSQEGVKFYAT
                     SLGQQITTQYAAPVVQTPQTPVQTEPAAPYYPNCSAVPEHLKPILSGQPGYGPHLDRD
                     RDGRACEPTRQ"
     gene            837..>1259
                     /locus_tag="U1335_002177"
     CDS             837..>1259
                     /locus_tag="U1335_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002943408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEM5232594.1"
                     /translation="MIKKFISCICLLLCSVALYACQSSQEAKTEVITSTQSISLEEVE
                     EKIGKQEDFYLYVGRPTCPYCQKFFPNLEKAIQDTQVSVYYLNTDEESSELVKNFVSS
                     QNIETVPHLTFYHDGAKQGYLEKGSQTPLEEIEQFLKQY"
BASE COUNT          406 a          265 c          226 g          362 t
ORIGIN      
        1 gggtattcta ttatctcatt tttgggaaat ttagggagtt tttagaggtg cccatatata
       61 ataacacgca caagaaacgc tttcatttta tgattgaata tgatatactt aaagaaatat
      121 gaaaggagat tcttcaaaat gaaactgaag acattcgtta tatcgttagc tactctcttt
      181 atcggagcaa gtatccaaac aagcgtttct gcagatactc ctatctatcg cctatataac
      241 cgacagaatg gtgaacatct ttataccact gatgcaaatg aaaaagatgt tttatacaac
      301 caacatggtt ggggatacga aggtattggt tggaatgccc ctgacactgg cacacctgta
      361 tacagacttt ataatgctgg tcttcaaaac catctctata ctagcgacac caatgaagta
      421 gccgttctaa cttctaaaca tggttggact tccgataaca acggacaacc tgtattctat
      481 tctggtggta ccgtcccaat ttaccgcgtt tataacttca aactccgtgg acttcaccat
      541 tggacaacag acctaaatga gtacaatgtt ctccctagtc atggctggtc acaagaaggt
      601 gtgaaattct atgcgacgtc cctaggacaa caaatcacaa ctcagtatgc tgcacctgtt
      661 gtccagactc ctcagacacc tgtacaaact gaaccagcgg ctccatacta tccgaattgc
      721 tctgctgttc ctgaacattt gaaacctatc ctatctggcc aacctggtta tggaccacat
      781 ttagatagag atagggatgg tcgtgcatgc gaaccgacta gacagtgata gaaattatga
      841 taaaaaagtt tattagctgt atttgtttat tactctgttc agttgccctc tatgcctgcc
      901 aatcatctca ggaggctaaa acagaggtta tcacctccac ccagtctatt tccctagaag
      961 aagtggaaga aaaaattggt aaacaggaag acttctatct atatgtcgga cgtccaactt
     1021 gtccttattg tcaaaaattc tttccaaatt tagaaaaagc cattcaagat acccaagtca
     1081 gcgtttacta tcttaataca gatgaagaat caagtgagtt agttaaaaat tttgtatcgt
     1141 ctcaaaatat agaaaccgta cctcacttaa ccttctatca tgatggagca aaacaaggct
     1201 atcttgaaaa aggaagtcag actccacttg aagaaattga acagttcttg aaacaatat
//
LOCUS       DASGAC010000288         1248 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.291, whole genome shotgun sequence.
ACCESSION   DASGAC010000288 DASGAC010000000
VERSION     DASGAC010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1248)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1248)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1248
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.291"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..>1248
                     /locus_tag="U1335_002178"
     CDS             <1..>1248
                     /locus_tag="U1335_002178"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012956.1,HMM:NF037639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEM5232595.1"
                     /translation="TELLQVGASSGNTLELTVKNDSKKTLRISKRIKGLESLAGLITG
                     NMTFTLSKDNDTSFQPVTVTQAANTDFVFNNLTYGSYTLVETAPPAGYMVEPITYKVS
                     VSRSGVSLYKVANAAPSERVAGATLIKSPDLSNIQSGQDGNAIDGSDTTSVTYQNFNG
                     QGNNIPAGAYLGVDLQGVKRVRRIHYLQGNQNNPLDRFNRFTLEYSIDGRTYFPLSTY
                     TANGLVDLDTDIMARYIRVRNEDLVEQKWYAVRELTVSAQATETVGALSTGQYPIGNI
                     RHPQIQVEKRDMSNARINQSVTFKLYKVDDATTTANAAAAIQESNLVQTFTLTNGQAS
                     QALQAKVLGRYALVEVAPPTGYRALAGPVLLDLTTAQETHSGSQMKTVSRFTLVDSTD
                     KVTIDTATANVLKIFVKNELLTY"
BASE COUNT          376 a          308 c          271 g          293 t
ORIGIN      
        1 tacggagctt ctacaagttg gtgcatcaag tggcaatacg cttgagctca cggtgaaaaa
       61 cgacagtaag aaaacccttc gcatttccaa acgcatcaag ggtctggaaa gcttagctgg
      121 tctcattaca ggaaacatga cctttacgct gtcaaaagac aacgacacaa gtttccaacc
      181 agtgactgtc acacaagctg cgaatacaga cttcgtcttt aataacctga cctacggttc
      241 ttatacccta gtcgagacag caccaccagc aggctatatg gtcgagccga ttacctataa
      301 ggtatccgtg agtcgctcag gagtttctct ctataaagta gcgaacgcag ctccgagcga
      361 acgtgtcgca ggagcaaccc tcatcaagtc ccctgactta tccaatatcc agtcaggaca
      421 agatgggaac gcaattgatg gaagtgatac aacttctgtg acctaccaga atttcaatgg
      481 tcaaggaaat aatattcctg ctggagccta tctaggggtt gacctacaag gcgtgaaacg
      541 tgtccgccgc attcactact tgcaaggcaa tcagaacaat ccgctggata gattcaaccg
      601 cttcacactt gagtactcaa tagacggacg cacctatttc ccactgtcta cttatacagc
      661 caatggatta gtcgatttgg acacggatat aatggctcgc tacattcgtg tgagaaatga
      721 agacctagta gagcagaaat ggtacgccgt tcgcgaattg accgtctcag ctcaagctac
      781 agaaaccgtt ggcgcattat caactggtca atatcctatt ggcaatatcc ggcatccaca
      841 gattcaagtg gaaaaacgag acatgagtaa cgctcggatt aaccagtctg tgaccttcaa
      901 actctataag gtggatgatg cgacgacaac tgcgaacgct gctgcagcca ttcaagaaag
      961 caatctcgtc caaaccttta cattgacaaa tggtcaagca agtcaggctt tacaagccaa
     1021 ggtactgggt cgttatgccc tcgtcgaagt cgcaccgcca actggttatc gtgctttagc
     1081 tggtccagtc ttactagact tgacaactgc acaggagaca cacagcggaa gtcagatgaa
     1141 gacagtgagt cgctttactc tcgttgattc aacagataag gttacaattg acaccgctac
     1201 tgcaaatgta ttgaaaatct tcgtgaaaaa cgaattactc acctacaa
//
LOCUS       DASGAC010000289         1244 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.292, whole genome shotgun sequence.
ACCESSION   DASGAC010000289 DASGAC010000000
VERSION     DASGAC010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1244)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1244)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1244
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.292"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            104..1126
                     /locus_tag="U1335_002179"
     CDS             104..1126
                     /locus_tag="U1335_002179"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009730267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HEM5232596.1"
                     /translation="MTVNIDWENLGFSYMKLPYRFIAHFKNGQWSEGQLTEDAELHIS
                     ESSPALHYGQQAFEGLKAYRTKEGKLQLFRPDQNAERLQRTADRLLMEPVPTDLFIKA
                     CKEVVKANADYVPPYGTGGTLYLRPLLIGVGDIIGVKPAEEYIFTVFAMPVGNYFKGG
                     LAPTNFLIQDKYDRAAPNGTGAAKVGGNYAASLLPGQYAKKQGFSDVIYLDPATHTKI
                     EEVGSANFFGITADNEFVTPISPSILPSITKYSLLYLAEHRLGMKAVEREVLVEELDQ
                     FVEAGACGTAAVISPIGGIQIADKLHIFHSETEVGPVTRKLYEELTGIQFGDIEAPEG
                     WIIEVD"
BASE COUNT          365 a          278 c          273 g          328 t
ORIGIN      
        1 gtttaccagg ctttttctta tattcacaaa attttctgaa tttttaattg aaaatcactt
       61 tcaaaagtag taaaatatta aaaaatgaat ttggagaaac tatatgacag tgaacattga
      121 ctgggaaaac cttggttttt cttatatgaa actaccttac cgcttcatcg ctcatttcaa
      181 aaacggccaa tggtctgaag ggcaattgac cgaagatgcg gaacttcaca tttcagaaag
      241 ctcaccagcc cttcactatg gccagcaggc ctttgagggc cttaaagcct atcgtaccaa
      301 ggagggaaaa ctccagctct ttcgtccaga ccaaaacgct gagcgcctac aacgaacagc
      361 tgaccgcttg ctcatggagc ctgtaccgac tgaccttttc atcaaggctt gtaaagaggt
      421 ggtcaaagcc aacgcagact acgttcctcc ctatggaaca ggtggcaccc tttatctccg
      481 tccgctcctg attggtgtcg gcgacatcat cggcgtaaaa ccagcagaag agtacatttt
      541 cacagttttt gccatgccgg tcggcaacta tttcaaaggc ggcctggctc cgaccaactt
      601 cctcattcag gacaagtacg accgtgcggc accaaatgga acaggggcag ccaaggttgg
      661 tggcaactat gcagcatcgc tcttaccggg ccaatatgcc aaaaagcagg gcttctcaga
      721 tgtcatctac ctggacccag ctacccacac caagattgaa gaagtagggt ctgctaattt
      781 ctttggtatt acagctgata acgagtttgt cacaccgatt tcaccatcaa tcttgccgtc
      841 tattaccaag tattctctct tgtacttggc agagcatcgt ctggggatga aggctgtgga
      901 gcgtgaagtc cttgtcgaag aattagatca gtttgtcgaa gcaggagcct gcggaacagc
      961 tgcagtcatc tcaccaattg gtggtatcca gattgcagac aaactccata ttttccatag
     1021 tgaaacagaa gtaggacctg tcactcgtaa attgtatgaa gaattaacag gtatccagtt
     1081 tggtgatatt gaagcgccag aaggctggat tatcgaagta gattaatttc agaaggcttg
     1141 cacttgcaag ctcttctctt tttttgtaga atagtaaaag tgaggtttga aaatgagtaa
     1201 aaaagataaa aaaattgaaa ttcagattga agatagcaaa gttc
//
LOCUS       DASGAC010000290         1239 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.293, whole genome shotgun sequence.
ACCESSION   DASGAC010000290 DASGAC010000000
VERSION     DASGAC010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1239)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1239)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1239
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.293"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            32..988
                     /gene="birA"
                     /locus_tag="U1335_002180"
     CDS             32..988
                     /gene="birA"
                     /locus_tag="U1335_002180"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     ligase/biotin operon repressor BirA"
                     /protein_id="HEM5232597.1"
                     /translation="MKTYQKIYLLLKEKDDYMSGEDLAQELGISRTSVWKAIRQLETH
                     GLTIEAARNRGYKLADGDLLLPDLIAEELQLPVYLKADSDSTQLDAKQGIESGHTSPA
                     LYLAPYQNKAKGRFGRPFYASKSGGIYMSLRLSPNVPFLEFKPYTILAAAAVVKAIQS
                     LCDLDVQIKWVNDIYLGHKKVAGILTEAISSIENQRVTDVIIGVGINVRIDDFPKELQ
                     QSAGNLFEEQPPFTRNQLITAIWKAFLETDEKELIALYKEKSLVVGQQVSFVENQVEF
                     KGTAIAVTDTGNLVIQLDNGKAKIISSGEISLTSWSASPPNE"
     gene            complement(954..1142)
                     /locus_tag="U1335_002181"
     CDS             complement(954..1142)
                     /locus_tag="U1335_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3272 domain-containing protein"
                     /protein_id="HEM5232598.1"
                     /translation="MKLPQFLFLAITTILAVYFMNASILTGDFLIAGIYAFIAYRNLH
                     FAYKVTKFIRLVEKQTKK"
BASE COUNT          396 a          271 c          238 g          334 t
ORIGIN      
        1 agagccacaa atactatgct ataatgaaga catgaaaacc taccagaaga tttatttact
       61 attaaaagaa aaagacgact acatgagcgg agaagatttg gctcaggaat tgggtatttc
      121 tcggacttca gtttggaaag ccattcgcca gttagaaacg catggtttaa ctattgaggc
      181 tgcccgcaat cgtggctaca aattggccga tggggatttg ctactgccag acttgattgc
      241 agaggaactc caactgcctg tctatctgaa agctgacagc gattcgaccc aactagatgc
      301 caaacaaggt attgaatcag gtcatactag tcctgcccta tatctagctc cctatcagaa
      361 taaagccaag ggacgatttg ggagaccctt ttatgcctcc aagtcaggcg gtatctatat
      421 gtccctccgc ctttctccaa atgtcccctt ccttgaattt aagccctaca ccattttagc
      481 tgcagctgct gttgtgaagg ccattcaatc tctttgcgac ttggatgtcc aaatcaagtg
      541 ggtcaatgac atctatctcg gacacaaaaa ggtcgctggc atcctcactg aggctatctc
      601 ttctattgaa aaccaacggg taaccgatgt cattatcggt gtcggcatca atgtccgcat
      661 agacgatttc cctaaggaat tacaacaatc tgctggaaat cttttcgagg aacaaccacc
      721 atttacccgc aatcaactca ttactgccat ctggaaagcc ttcttagaaa ccgatgagaa
      781 ggaactaatt gccctttaca aagaaaaatc acttgtcgtt ggccaacaag tgagctttgt
      841 agaaaatcaa gttgaattta agggtacagc catcgctgtt actgatacag gaaatctggt
      901 catccagtta gacaatggca aagcaaaaat tatctccagc ggagaaatca gccttacttc
      961 ttggtctgct tctccaccaa acgaataaat ttagtcacct tgtaagcaaa atgaagattc
     1021 cgataggcga taaaggcgta gatacctgca atcaagaaat ctcctgtcaa aatcgatgca
     1081 ttcataaaat aaacagctaa aatagttgta atggctaaaa aaagaaattg tggaagtttc
     1141 ataaaataga ttataccaaa aattcagtca actggctgaa tttttatatg ctttcttgat
     1201 aggtttcgat tcttttttaa acaagaaaac accaatcta
//
LOCUS       DASGAC010000291         1226 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.294, whole genome shotgun sequence.
ACCESSION   DASGAC010000291 DASGAC010000000
VERSION     DASGAC010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1226
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.294"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            276..641
                     /locus_tag="U1335_002182"
     CDS             276..641
                     /locus_tag="U1335_002182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002303676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM5232599.1"
                     /translation="MKHPKFEFYTRPNGRTEFIEFLQTLPTKDKQKLLATISMIQEQG
                     LLIAQRMEWVKKLDSEIFEIRSKVSSNIQRALYFHVVDDRFIITHGFTKKTQKTPTAE
                     IKHAKVLKKEFEENNNGNH"
     gene            628..903
                     /locus_tag="U1335_002183"
     CDS             628..903
                     /locus_tag="U1335_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002959518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5232600.1"
                     /translation="MATIKFDDYLQEELKSDDFKSGYLSEKAILESALAVYNARQKAG
                     LTQRELAELSHVPQSTIARIERGNNTSIETMSKIAFALNQELTINIG"
BASE COUNT          425 a          237 c          194 g          370 t
ORIGIN      
        1 atatcgaggt atgtaaacgt ttagagaatt ggctaacatt acgtgctttc ttaagacctg
       61 gtttgaaaga ttgttatttg aataaattcc aaaacccttt aaaatcaacg ttttcacgga
      121 ttttcaaaac ttagaatttc atccaatttc aactaatttc atctgaatgg tgtgaatttt
      181 acccctaaaa tacacgaatt gagctaaaat atacccaaaa gttcacacca ttgataattg
      241 cacaaatgaa caatatatgc tatcatggag acataatgaa acacccaaaa tttgaatttt
      301 acacacgccc aaacgggcgg acagaattta tcgaatttct acaaacctta ccaacaaaag
      361 acaagcaaaa actcctagct actatcagca tgattcaaga acaggggttg ctaatagctc
      421 agcgcatgga atgggttaag aagttagata gtgaaatctt tgaaattcgc tctaaggtat
      481 ctagtaacat tcaacgtgct ctttatttcc atgtcgtcga tgatcgtttt atcattacac
      541 atggttttac caaaaaaaca caaaagacac ctactgctga aatcaaacac gctaaagtat
      601 tgaaaaaaga atttgaggag aataacaatg gcaaccatta aatttgatga ttatctgcaa
      661 gaagaattga aaagcgacga cttcaaatct ggctacctga gtgaaaaagc tatcttagaa
      721 agtgctcttg ctgtctataa tgcacgccaa aaggctggac ttactcaacg tgaactagcg
      781 gaactctcac atgttccgca gtcaaccatc gcacgcattg agcgaggaaa caacaccagc
      841 atcgaaacca tgagtaaaat cgctttcgct ctcaatcaag aactaactat taatattggt
      901 tagtttcatc ttcaatacat cactataaca gcactcctga tctgacttag ggtgctgatt
      961 ttctttttac tctctactat acacaattgc ttctgtaata tttaactcca tatgctctgt
     1021 tccagttctt actgcattca aatgtaaaaa ttcagttatt tttgcacgat tgtataatat
     1081 tgatttcaac accctccgtt attgagcatt tacattcttg actttattat agtatagagt
     1141 aggaccgttg ttggagaaaa tgctaattga cacatttaaa atttgttgga taaaaaatag
     1201 gacagcaagc tatttgctat cctaat
//
LOCUS       DASGAC010000292         1198 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.295, whole genome shotgun sequence.
ACCESSION   DASGAC010000292 DASGAC010000000
VERSION     DASGAC010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1198
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.295"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..1101
                     /gene="dnaN"
                     /locus_tag="U1335_002184"
     CDS             <1..1101
                     /gene="dnaN"
                     /locus_tag="U1335_002184"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000581170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEM5232601.1"
                     /translation="QALSITKRAISTKNAIPILSTVKITVTSEGITLTGSNGQISIEH
                     FISIQDENAGLLISSPGSILLEAGFFINVVSSMPDLVLDFNEIEQKQIVLTSGKSEIT
                     LKGKEAEQYPRLQEVPTSKPLVLETKVLKQTINETAFAASTQESRPILTGVHFVLTEN
                     KNLKTVATDSHRMSQRKLVLDTSGDDFNVVIPSRSLREFTAVFTDDIETVEVFFSNNQ
                     ILFRSEHISFYTRLLEGTYPDTDRLIPTEFKTTAIFDTANLRHSMERARLLSNATQNG
                     TVKLEIANNVVSAHVNSPEVGRVNEELDTVEVSGEDLVISFNPTYLIEALKATTSEQV
                     KISFISSVRPFTLIPNNEGEDFIQLVTPVRTN"
BASE COUNT          397 a          222 c          214 g          365 t
ORIGIN      
        1 caagcactta gtattactaa acgggcaatc agtacaaaaa atgctattcc aattctttca
       61 acagtaaaaa ttacagtaac tagtgaagga atcactttaa ctggttcaaa tggacaaatc
      121 tcgattgaac attttatttc tattcaagat gaaaatgcag gacttttgat cagttctcca
      181 ggctccattc tcttagaagc tggtttcttt attaatgtcg tatccagcat gccggattta
      241 gtccttgact tcaatgaaat tgaacaaaag caaatcgttt tgacaagtgg taagtctgaa
      301 atcacattaa agggaaaaga agcagaacag tatccacgtt tacaggaagt tccaacttca
      361 aaaccattgg tgttagaaac caaagtatta aaacaaacaa ttaatgaaac agcatttgca
      421 gcttctacac aagaaagtcg tcctattctt acgggtgttc attttgtttt aacagaaaat
      481 aaaaatctaa aaactgttgc aacagattca caccgtatga gccaacggaa attggtcctt
      541 gatacatctg gtgatgattt taatgttgtc attccaagtc gttctctccg tgaatttact
      601 gcagttttta cagatgatat tgaaacagtg gaagtcttct tttcaaataa tcaaatcctt
      661 tttagaagcg agcatattag cttctataca cgcttattag aaggtaccta ccctgataca
      721 gaccgcttaa ttccaactga gtttaaaaca actgcaattt ttgatactgc aaatcttcgt
      781 cactcgatgg agcgtgctcg tcttctttca aatgcaaccc aaaatggtac agtaaaacta
      841 gaaattgcta ataatgttgt atcggctcat gtaaattctc cagaagttgg acgtgtgaat
      901 gaggaattag atactgtaga agtatcaggt gaagacttag taatcagctt taacccaact
      961 tacttgatag aagcattgaa agccacaact agtgaacaag tgaaaattag ctttatctct
     1021 tctgtccgtc catttacatt gattccaaat aatgaagggg aagattttat tcaattggtt
     1081 acaccagttc gtaccaacta aataatatta aggaggctgg gcaaaaagac caacctcgct
     1141 tctcagggtt cgtgtcaaca tctcagcgca gtggttgatt ggcagatttg ttcgtgtt
//
LOCUS       DASGAC010000293         1193 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.296, whole genome shotgun sequence.
ACCESSION   DASGAC010000293 DASGAC010000000
VERSION     DASGAC010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1193)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1193)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1193
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.296"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            1..645
                     /locus_tag="U1335_002185"
                     /pseudo
     CDS             1..645
                     /locus_tag="U1335_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611222.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
     gene            811..1131
                     /locus_tag="U1335_002186"
     CDS             811..1131
                     /locus_tag="U1335_002186"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232602.1"
                     /translation="MMNLLEYIGPILFITAIISYSLYRRFKDSKATINVPKCPKCKSE
                     KLQKYPPKKREYSPRDAIIGQAIGGRNGAMFALLYEADKTHYHCRFCGHNLAIKENRL
                     IRES"
BASE COUNT          411 a          224 c          205 g          353 t
ORIGIN      
        1 actcatccag atgattattt gactgaaata gcttctgaat ttgattgtca tccaactgct
       61 attcattacg ctctcaaagc tatgggatat actcgaaaaa aaaagagctg tacctactac
      121 gaacaagacc ctgaaaaagt agaactgttc cttaaagaat tgaataactt aagccacttg
      181 actcctgttt atattgacga gacagggttt gagacatatt tttcatcgag aatatggtcg
      241 ctctttgaaa ggtcagttga taaaaggaga aggtaaggtc tctggaagaa gataccagcg
      301 gatatcttta gtggcagatc tcataaatgg tgtacttata gccccgatga catacaaaga
      361 tactatgacg agtggctttt tcgaagcttg gttcaaaaca ttcttactcc ccactttaga
      421 gacacaatcc gttatcatta tggacaatac aaagtttcat aggatgagta agctaaaaga
      481 tttatgcgaa gagcaggggc atagactttt accacttcct ccttactcac ctgagtataa
      541 tcctattgag aaaacatggg ttcaaatcaa aaaacacctc agaaaagtat tgccaaattg
      601 cgacactttc cttgaggcac tttgtcctgt tcttgtttca attgactata aacagcaagt
      661 tttgtaaagg ttttgtgaaa tttttaacgt aaaaaatttc atcctgccca agacaatgat
      721 tcaccatcta ccttactgct actccgcaat aattcgttta cttgatgaat ggtttaaaat
      781 tcagtaaaat aatgtttacg aggagggaaa atgatgaatt tactcgagta tatcggtccg
      841 attctcttca ttactgcaat cattagctac agtctctacc ggaggtttaa agatagcaag
      901 gccactatta acgtaccaaa atgtccaaaa tgtaagtcag aaaaacttca aaaataccct
      961 cccaaaaaac gcgaatattc tcctcgagat gcaattattg gtcaagcaat tggtggaaga
     1021 aacggcgcaa tgtttgccct tctttatgaa gctgataaaa ctcattacca ttgtcgattt
     1081 tgtggacata atttggcaat aaaagaaaat cgtttaatta gagaatccta aaattatcaa
     1141 tttaaacctt gaacatcatt ttaccttcaa aaagcaaaaa caactgataa aat
//
LOCUS       DASGAC010000294         1160 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.297, whole genome shotgun sequence.
ACCESSION   DASGAC010000294 DASGAC010000000
VERSION     DASGAC010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1160
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.297"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..1079
                     /locus_tag="U1335_002187"
     CDS             <1..1079
                     /locus_tag="U1335_002187"
                     /inference="COORDINATES: protein motif:HMM:NF012744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM5232603.1"
                     /translation="YYSPIEKEHGLFAEIYKRTFYNLDGSVAFDTIYRLEGEYHIFPS
                     GKILSKAELVNEYIENLNLSSKDLIILDRIVHSSFGQPLLKSTNGAKIIAVLHSEHYF
                     ERLVDADYGVGLSHEYYNYFNNLDRIDTFVVSTSEQAEKLHDYIKLHHHRTDIAIKVI
                     PVGYIEKVSPNQKENGKQIVSISRITQRKRIDWLIKAVIEARKTVADISLDIYGAPDY
                     AAYYNYLSDIIHYHQAEDYIQFKGYTSNKEIYKEYDILVNASVGESFGLVFLEAVSFG
                     LPIIGFDVPYGSREFINDDKNGVLVPFSDSDEENIKNLSNSIIHLLTNPEFSALKEGS
                     YEVANRFLKSNILNEWKELLEVGT"
BASE COUNT          402 a          194 c          201 g          363 t
ORIGIN      
        1 attattatag tccaattgaa aaagaacacg gcctcttcgc agaaatttac aaaagaacct
       61 tttataacct tgatggtagt gttgcttttg ataccattta ccgtttagaa ggtgaatacc
      121 atattttccc ttctggtaag atactaagca aagcagagtt ggtaaatgaa tacatagaaa
      181 atttaaacct ttctagtaag gatcttatca tcttggaccg tatcgtacat tcttcattcg
      241 gccaaccatt gttaaaatct actaatggcg caaaaataat tgctgtactc cattctgaac
      301 attattttga gagattagtt gatgctgatt acggagtagg attgagccat gaatactaca
      361 attatttcaa taatttagat agaattgaca cttttgttgt ttctactagc gagcaggcag
      421 aaaaattaca tgactacatc aaactccacc atcatcgaac agatatagct ataaaagtca
      481 ttccagttgg atacatagaa aaggtatccc caaatcagaa agaaaatgga aaacaaatag
      541 tgtctatttc cagaataacc caacgaaaaa ggattgattg gttaataaaa gcagttattg
      601 aagcacggaa aactgtagca gatatctctt tagacatcta tggtgcgcct gactacgctg
      661 cctattataa ctacctatca gatatcatcc attatcatca agctgaagac tatattcaat
      721 ttaagggcta tacaagcaat aaagagattt ataaggaata tgacatactt gtaaatgctt
      781 ctgttggaga atcttttggc ttggtatttt tagaagctgt ttctttcggt ttaccaatta
      841 ttggcttcga tgtcccatat ggatcgcgag aatttatcaa tgatgataaa aacggtgttc
      901 tggtcccttt ttcagatagt gacgaagaaa atattaaaaa cttgtcaaac agcattatac
      961 atttactgac caatcctgaa ttctcagcac taaaagaagg ctcctatgaa gtagctaatc
     1021 gatttttaaa atcaaacata ttgaatgagt ggaaagaact attggaggtt ggaacatgat
     1081 aggattattt gataatcagc agctagcaga aaaatttgtt gctagctatc ctgaattaaa
     1141 cattctgcat cattcttttg
//
LOCUS       DASGAC010000295         1147 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.298, whole genome shotgun sequence.
ACCESSION   DASGAC010000295 DASGAC010000000
VERSION     DASGAC010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1147
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.298"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(1..568)
                     /locus_tag="U1335_002188"
                     /pseudo
     CDS             complement(1..568)
                     /locus_tag="U1335_002188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612110.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus and C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
BASE COUNT          323 a          235 c          229 g          360 t
ORIGIN      
        1 gatttcttgg agcttatcaa tgactgactc caatgtttga aaagctctgt tcttaaatcc
       61 gcgtttgcgg atttctgccc aaacttgttc aatcggattc atctcagggg tatatggtgg
      121 tatgaacgta aattcaatat tatcaggaat ttcaagtgcc tgagatttat gccaaattgc
      181 attgtccatg actaaaacga tgtaatcatc gggataagct tttgataatt gacgtaaaaa
      241 ttcattcatc caagcggtat tacaactacc agctattata aagaaagatt cccctgtatg
      301 tgcatctgcc gcaccatagc agtaacgaaa ttctcggatg tgatggcttg agacattcgg
      361 acggtagttt ttaggactcc aacatgcccc cagtttacta atccgaccaa accctgcttc
      421 atcttgatat ataagacggg tttgcttata ggcatattgt tcaaaaagtc gcttacttga
      481 tttttccttg tacaaagatt ttatttttta acgctaaaat cgtttcggcg tctgctttct
      541 ttggatgttc tggacttggc gtaatttttg ttgaggctgg gctcaagccc aggaccacta
      601 ctcagagttc gtgtcaacat ctcagcgcag tggttgattg ggtttaacag tccagtggac
      661 tgttaaaggt tggagatagg atttgcgaag caaatctcag caatgcgtgt tttacactcc
      721 aaatctaacc attacgactg ttgcgaacaa agttcgcttc atctccaacc tcaaacagtc
      781 actactctga ctgttttgta gcgaactctg ttcgctctat ctccgacctc caaaggttcc
      841 ccaaaccttt ggagctatac ggggatggga gtttaaaagg tctgggagac cttttaaagt
      901 gggagatata agctgacggc agtcagctca cataaattga tgtctgggaa tagactgttt
      961 cagctcaaca acttaaaacg aaaaattgtt gacgaactct ttttgactta gtctagttct
     1021 ttatacgaag actcaaaaga atgcaaaaac tccctcccta tgatataatc aaagcaaaaa
     1081 aattttttat gttaggctac tagctcgtcc ctagtagtct ttttctgtgc taaaaattca
     1141 ggatacg
//
LOCUS       DASGAC010000296         1140 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.299, whole genome shotgun sequence.
ACCESSION   DASGAC010000296 DASGAC010000000
VERSION     DASGAC010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1140)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1140)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1140
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.299"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(43..392)
                     /gene="tnpA"
                     /locus_tag="U1335_002189"
                     /pseudo
     CDS             complement(43..392)
                     /gene="tnpA"
                     /locus_tag="U1335_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148688.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
     gene            complement(760..906)
                     /locus_tag="U1335_002190"
     CDS             complement(760..906)
                     /locus_tag="U1335_002190"
                     /inference="COORDINATES: protein motif:HMM:NF012948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM5232604.1"
                     /translation="MNRKATKLPNTGEAQSSVSGLLSATMLGGAFALMAKRRRKEREE
                     DDIS"
     gene            875..>1140
                     /locus_tag="U1335_002191"
     CDS             875..>1140
                     /locus_tag="U1335_002191"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232605.1"
                     /translation="MFGSLVAFRFTGFATSEVIAEAEVLADIDADVLALVEALVLADS
                     DALTEAEVLMDSDTDFISIDGNEWDVPPAFEVIMLELALVEADVL"
BASE COUNT          315 a          240 c          212 g          373 t
ORIGIN      
        1 tttcttaatt gtggcttcat taagtccaac ttacactctt caacaattcc ccaaattgtt
       61 gaagctctct acccagaaat gacgattacc aaatttgtat ttgagattgg cgtgtttatc
      121 aaacatcgtt agagcactct tgccttttaa atagcccata aaacttgata cacttaacct
      181 tggaggaata ctgactaaca tgtgaacatg gtctggcatc agataacctt cgataatttc
      241 aacaccttta taactacaca atcgtcgaaa tatctctcca agactacttc gatattgatt
      301 atagataatt tttcgtctat acttaggggt gaagacaatg tggtagaaca caaccacttt
      361 gtatgtgata aactatgtgc cttttgcgcc atatttttct cctttcgctt tacaataggc
      421 ttgaacacct ttattgtatc gcgtttggag tttttttggt ataaccttcg tcgcgcacct
      481 tacggagcgt gacggattaa aagtcacata atagaaaaag gttccagagt cgacaggact
      541 ttggagcctt tttcaatata ccttgttatt gggcggttac gttacttttc ctcactataa
      601 aaaaaagctc tataaattcg aggatggttc tgaccacttc cgaattatag agctattttt
      661 gatacgtccc aattagttta gtttaacgaa gagttcgctt ttctactgca atacagaatt
      721 ctgttaactc tctcagttct atctacaaac tgaataccat tatgaaatat catcttcttc
      781 tcgctcctta cgacgacgtt tagccataag tgcaaaggct cctcctaaca ttgtggcact
      841 caacaatcct gatactgaag actgagcttc acctgtgttt ggtagcttag ttgccttccg
      901 attcactggt tttgcaactt cagaagtcat tgccgaagct gaggtacttg ccgacattga
      961 tgcagacgta cttgcgctag ttgaggcact tgtgcttgcg gattctgacg cacttactga
     1021 ggcagaagta ctaatggatt ctgacactga ttttatatca atagatggta atgagtggga
     1081 cgtaccacca gcatttgagg taattatgct cgaacttgcg ctagttgaag cagacgtgct
//
LOCUS       DASGAC010000297         1132 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.300, whole genome shotgun sequence.
ACCESSION   DASGAC010000297 DASGAC010000000
VERSION     DASGAC010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1132
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.300"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..504)
                     /locus_tag="U1335_002192"
     CDS             complement(<1..504)
                     /locus_tag="U1335_002192"
                     /inference="COORDINATES: protein motif:HMM:NF014051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HEM5232606.1"
                     /translation="MNKGNKMSSFHKQVGNALKWSSLAEIVAKLITPLSNTILARLLT
                     PEHFGVIATITMIISFADIFSDSGFQKYLVQHEFESEYELDKAANVAFSSNFLISIFL
                     WLFISLLNEQISSIVGNPGLGIVIIVAGFSLPITAFSSIQSALFKRKLEFRVLFYARI
                     LSSLVPLL"
     gene            complement(497..958)
                     /locus_tag="U1335_002193"
     CDS             complement(497..958)
                     /locus_tag="U1335_002193"
                     /inference="COORDINATES: protein motif:HMM:NF012360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine acetyltransferase"
                     /protein_id="HEM5232607.1"
                     /translation="MKRKAELVAIKARNYFLAKKYRRATFFSTVLRVVFSCDLPAEVQ
                     FHESIQLVHNGLGCVFHPKTVIAENCKIYQNVTLGGNGKIINGEIISGAPKLEKNVAV
                     FAGACVLGPITIGHDSIVGANAVVTKNVPPHSLVIGNPAQVKELNFEYNFE"
BASE COUNT          411 a          220 c          146 g          355 t
ORIGIN      
        1 taaaagaggt actagcgacg ataatattct tgcataaaat aaaactctga actcaagttt
       61 tcttttaaat aatgcacttt ggatactgga aaatgctgtt attggtaacg agaaacctgc
      121 aactataatt acaataccca agccaggatt tccaacaatt gaagatattt gttcatttaa
      181 taaagaaata aatagccata aaaatattga aatcaaaaaa ttactgctaa aagctacatt
      241 tgctgcctta tcaagttcat actcactttc aaactcatgt tgaactaagt atttttgaaa
      301 gccagaatca ctaaatatat cagcaaaact tattatcatt gtaattgttg caatgacgcc
      361 aaaatgctct ggagttaata atcttgcaag aatggtatta gaaagtggag ttataagttt
      421 tgcaactatc tcagcaagcg atgaccattt caaagcattt cctacttgtt tgtgaaaact
      481 actcatttta ttacctttat tcaaaattat actcaaagtt caattcttta acttgtgcag
      541 gattcccaat taccaaggaa tgaggtggaa catttttagt aacaactgca tttgcaccaa
      601 ctatagaatc atgaccgatt gtaataggtc ctaaaacaca agcaccagca aagaccgcaa
      661 cgtttttttc taatttaggt gcgccactta tgatttcccc gtttataatc ttaccatttc
      721 cacctaaggt aacattctga tatattttgc aattctccgc gatgactgtc tttgggtgaa
      781 aaacacaacc taatccatta tgtaccaact gaattgactc atgaaattga acttctgctg
      841 gtaaatcgca agaaaatacc actctcaaaa ctgtagaaaa aaaagttgct ctcctatatt
      901 tttttgccaa aaaataattc cttgccttaa tagcaaccaa ttcagcctta cgtttcactt
      961 tttaatacct ccaaattatt atagtcgaac atccgattct caatcgtaca caacaaaacg
     1021 attccgtata aaaatctaga actcactata tcaggaataa acatcgaacc aattacaact
     1081 aataaaaaca accacttgct ataattattc cttaagacat catttgtaat aa
//
LOCUS       DASGAC010000298         1119 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.301, whole genome shotgun sequence.
ACCESSION   DASGAC010000298 DASGAC010000000
VERSION     DASGAC010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.301"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..907)
                     /locus_tag="U1335_002194"
     CDS             complement(<1..907)
                     /locus_tag="U1335_002194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEM5232608.1"
                     /translation="MDVLYQSCAGIDVHQANIVVCILHGPFTSTRPKREMATFDTTTR
                     GLRACHDFLSQFHVEAVGMESTGVYWRPVWHALCDDFKLILAQPAHMKAIPGQKTDKK
                     DAHWIAKLTRIGLLPRSFVPDETIQELRELTRQRKHYVESRNRETNRIHKILQSGGIK
                     LTTYIEDIMGLSGCNLLQLLVDGTPITPRIVHQSVYTSLKKKVPQLLEALDGYFSDHH
                     RFMLKQSLEIYDFYQKQIEMLEERINGYLSQYEKQVEILDSIPGIDVITASVIISEVG
                     VDMSQFPTAGHLASWAGLCPGNNESA"
     gene            complement(898..1119)
                     /locus_tag="U1335_002195"
                     /pseudo
     CDS             complement(898..1119)
                     /locus_tag="U1335_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011681261.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          340 a          249 c          233 g          297 t
ORIGIN      
        1 cagcactctc attattacct ggacaaagtc cagcccaaga agctaaatgt ccagcagtgg
       61 gaaattggct catatcaaca ccaacctcag aaatgataac agaagctgta atgacatcaa
      121 tgcctgggat ggaatccaat atttctactt gtttctcata ttgtgataga tagccattga
      181 ttcgctcttc caacatctca atctgcttct gataaaaatc ataaatctct aaggactgct
      241 ttaacatgaa gcgatgatgg tcagagaaat agccatccaa ggcttccaga agctgcggca
      301 ctttcttctt caagctggta taaacggatt gatggacaat gcgaggtgta ataggcgtcc
      361 catcaaccag tagctgaagg agattacatc cagatagccc cataatatct tcaatatagg
      421 ttgttagctt gataccacct gactgaagaa ttttatggat acgattggtt tcgcgattac
      481 gactttccac ataatgtttt cgctgtctgg tcaactccct caattcttga atggtttcat
      541 cgggaacgaa actccgagga agcagaccaa tccgtgttaa tttggcaatc cagtgagcat
      601 ccttcttgtc ggttttctga cctgggatgg ccttcatatg tgctggttga gcgagtatca
      661 acttgaagtc atcacagaga gcatgccaga caggtcgcca ataaacacct gtgctttcca
      721 taccaacagc ttccacatga aattgactga gaaaatcgtg gcaagcacgt aggcctctag
      781 tcgttgtatc aaacgtagcc atctcacgct ttggacgagt tgaggtgaat ggtccatgta
      841 ggatacagac gacaatattg gcttgatgga catcaatacc tgcacaagat tgatagagaa
      901 catccatgat aattccctcc tttcgggaac agtgtcttca tgacaaccaa caaaacgacg
      961 aaaagatata caatccagca gttgatattc catggcatcg tcagataggt tatgaagacg
     1021 ttgaagcaag agcactttga acatcatgag atagtctagg tgaggacaac cgccacgact
     1081 gatgacttta tctttacgac tgaataactc tgacaacaa
//
LOCUS       DASGAC010000299         1102 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.302, whole genome shotgun sequence.
ACCESSION   DASGAC010000299 DASGAC010000000
VERSION     DASGAC010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1102)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1102)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1102
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.302"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            1..905
                     /locus_tag="U1335_002196"
                     /pseudo
     CDS             1..905
                     /locus_tag="U1335_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006531615.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
BASE COUNT          472 a          141 c          206 g          283 t
ORIGIN      
        1 taactatttc atttaaaaca aatccgagaa tgacaaacat tcgacataat aatagagatt
       61 taacagaaaa agaatggaag agcccagaac attcacatat tcttagagat aaaagtcatc
      121 aaaatattgt agttaaacaa ttagatattc gagagctata tgaaaaggaa tttggacctt
      181 ctttgcagga atacaatgaa aagcagataa gaaatgatcg aaaaatcaag gattattata
      241 aacatgttgg taaacttgat accttagatc aacaaagaga gtttatcatt ggtattggat
      301 caaaagcgga ttgggatgaa ttaccagaag gatataaact caacataggg atatatttag
      361 ctaaatatgc acaagatttc gaaaaacgtc atccacattt ccgtgtttat aatgcagtag
      421 tgcatctgga tgaaaaaggt gctccgcatt tacatttaaa tgtagttccc atcgcagacg
      481 gttataaaaa tggtctctct aaacagccca gcttttcaaa agcattgaag caagagggat
      541 ttacagaaaa aggaaaattt caacttatgg cttttcgcaa caacgaaatt aaagtccttg
      601 agacaatgtt gaaagaaatg gcagtcgaac gtaaaaaagt aggtacgaac aagattaaag
      661 acatgcgtga atataaagaa atgatggctg aacttgagga ggaaaaagga aagaaactga
      721 atgagattaa agctgaaatc acttctgagg tctcaaaagt agaaaaagaa tttgcaaaaa
      781 agaaagagaa gttgaataca cttgaaaaag agattgatag aaaaacacaa tcaattgaac
      841 aatatgataa tgtcatccat tcaaagcaag agtctgttaa taagttagat gaaaagtttg
      901 aagctaaagc tgataaacta gaattactat tagctcaaga aaaagctata aatgctatca
      961 acgaacaatt attaaaggat attggaatta aagaggataa gaattaccta tttaccaagg
     1021 actttaaagt agaggaacgt ggactaattg gaaaaaaaga aaaatttgca gttgtacctt
     1081 taaaaatttt tgaaaaaatg tt
//
LOCUS       DASGAC010000300         1097 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.303, whole genome shotgun sequence.
ACCESSION   DASGAC010000300 DASGAC010000000
VERSION     DASGAC010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.303"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            15..824
                     /locus_tag="U1335_002197"
     CDS             15..824
                     /locus_tag="U1335_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001149945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5232609.1"
                     /translation="MMKTTTSQRLKQILSERNLRQVDILNRSLPFQKELGVKMGKSAL
                     SQYVSGKSSPDQDKLVLLSKTLGVSEAWLMGYDVPMSDNREEQELLSKISEKSSGLTV
                     DNQKIILTTIENILAKQSDIAEKRSEYNSNKVVKLSDYKEYRSEKLSGILSAGRGIWQ
                     EEDLDMEISLPIDDVPSYNSYDSLAKVVGESMRPKFHDGDILFIKHTNQVEVGEIAAF
                     KVDGENFVKKLKKDNMGRYYLESLNDDYDDIFFDEDCTVETIGVVVDYWRE"
     gene            828..>1097
                     /locus_tag="U1335_002198"
     CDS             828..>1097
                     /locus_tag="U1335_002198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001174228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HEM5232610.1"
                     /translation="MAKTVEKIIFRVAGVTNYKKAVKQACEDIAEDNGIPDYAKYYGD
                     LSTKEIREELEEFGGQIFKYQDLSTTEIELLPEPDNKYDGNAIKVL"
BASE COUNT          400 a          144 c          221 g          332 t
ORIGIN      
        1 gaaagggata ttgaattatg aaaacaacca catctcaaag gcttaagcaa atattatccg
       61 aacggaattt aagacaagtc gatattttga accgttcttt gccttttcaa aaagagttag
      121 gtgtaaaaat ggggaaaagt gcactatctc aatatgtatc tggtaaatcc tctcctgatc
      181 aggataaact tgttttgtta tccaaaactc ttggagtatc tgaagcctgg cttatgggat
      241 atgatgttcc aatgtctgat aatcgtgaag aacaagaact tctttcgaaa atttcagaga
      301 aatcttctgg attaacagta gataatcaaa aaattatttt gacaactatc gaaaatatac
      361 ttgcaaaaca atctgatata gcagaaaaga ggagtgaata taattcaaat aaagtcgtta
      421 aacttagtga ttataaagag taccgttctg aaaaactgag tggaattcta tctgctggtc
      481 gaggaatctg gcaagaagaa gatcttgaca tggaaatctc tttacctatt gatgatgttc
      541 ctagttataa cagctatgac tcacttgcaa aagttgtggg tgagtcaatg agacccaagt
      601 ttcatgacgg agatatatta tttatcaaac atactaatca agttgaagtt ggtgagatag
      661 ctgcttttaa agttgatggt gagaactttg taaaaaaatt gaaaaaagac aatatgggaa
      721 gatattatct tgaaagctta aatgatgatt atgatgatat tttctttgat gaagattgca
      781 ctgttgaaac aattggagta gttgttgatt attggaggga ataaaaattg gcaaagactg
      841 ttgaaaaaat tatttttaga gtcgctggtg tcactaatta taaaaaggca gtgaaacaag
      901 catgtgaaga tattgctgaa gataatggca taccagatta tgctaaatat tatggcgacc
      961 tttcgacaaa agaaattaga gaagaacttg aagaatttgg tgggcagatc tttaagtatc
     1021 aagatttatc tactactgag attgaattgc taccagaacc tgacaataaa tatgacggca
     1081 atgctatcaa ggttcta
//
LOCUS       DASGAC010000301         1094 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.304, whole genome shotgun sequence.
ACCESSION   DASGAC010000301 DASGAC010000000
VERSION     DASGAC010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1094)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1094)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.304"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..708)
                     /locus_tag="U1335_002199"
     CDS             complement(<1..708)
                     /locus_tag="U1335_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014736409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HEM5232611.1"
                     /translation="MTKTATLTVTKLLTEDEYIVPLYQRNFSWTYDEIEQLLIDIADA
                     YNEREKRPDYYIGTLVVHQKGNMYHIIDGQQRTTALTLLALVLRNEYHIQIPGLKLLN
                     FEARKQSNASLQQLFENSGAAFENMDEIIRGYQNTKLALNKILSEQFKMEVTVYAEYL
                     FQHVIIFRNMLPTDLDLNLYFERFNSRGEQLEAHEIIKAQLMAKLDDEEAAKFAKIWD
                     ACADFENPVVKSFQMRKK"
     gene            complement(705..>1094)
                     /locus_tag="U1335_002200"
     CDS             complement(705..>1094)
                     /locus_tag="U1335_002200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232612.1"
                     /translation="ETWFENLSLDSKMLKILHSTKQRYNRNRNLFDNLVLLFVDRFGQ
                     GALDKDIVETIFIWAYYPRIKARAIYDSTLANYAAGGIFQRRTVQKLFQLLHHASTPS
                     DFLQKINRDQFEHFTLEKILEEEELNK"
BASE COUNT          349 a          215 c          170 g          360 t
ORIGIN      
        1 tttctttctc atttgaaagg atttaactac cggattctcg aagtctgcac aagcatccca
       61 gattttagca aacttagcag cttcttcatc atcaagtttc gccatcaatt gagccttaat
      121 aatttcatga gcttccaatt gctctcctct tgaattaaac cgctcaaaat aaagattcaa
      181 atctaagtca gtaggtagca tatttctaaa aatgataacg tgttgaaaga ggtactcagc
      241 atatactgtc acttccattt taaactgttc ggacagaatt ttattgagtg ctaatttggt
      301 gttttggtaa cccctaataa tctcatccat attctcaaat gcagcaccac tattttcaaa
      361 taactgttgc aaagaagcat tggactgctt acgtgcttca aaatttaaga gtttcaagcc
      421 aggaatctga atgtgatact catttctcaa aaccaatgcc aacaaagtca aagctgttgt
      481 tctctgttgc ccatcaataa tatggtacat atttcctttt tgatgaacaa ccagtgttcc
      541 gatgtaataa tcaggacgct tttcacgttc gttgtaggcg tctgctatgt caataagcaa
      601 ttgctcaatc tcatcatatg tccatgaaaa atttcgctga taaagaggaa caatgtattc
      661 atcttcagtc aaaagttttg taactgtcaa agtagctgtc ttagtcattt attaagctcc
      721 tcttcttcaa gaattttctc caaggtaaaa tgttcaaatt gatcacgatt gattttctgc
      781 aaaaaatcgc ttggtgtact agcatgatgt aatagctgaa ataatttttg aactgtacgc
      841 cgttgaaaaa ttccacccgc agcataattg gctaaagtgc tatcataaat ggcacgcgct
      901 tttatacgtg gataataggc ccatataaaa attgtttcaa caatatcttt atctaaagct
      961 ccctgaccaa acctatccac aaaaagcaat actagattat cgaataaatt acgattccga
     1021 ttataacgtt gtttagtaga atgtaaaatc tttagcattt tggagtctaa actgagattt
     1081 tcaaaccaag tctc
//
LOCUS       DASGAC010000302         1078 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.305, whole genome shotgun sequence.
ACCESSION   DASGAC010000302 DASGAC010000000
VERSION     DASGAC010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1078)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1078)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.305"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(51..362)
                     /locus_tag="U1335_002201"
     CDS             complement(51..362)
                     /locus_tag="U1335_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEM5232613.1"
                     /translation="MQEKHEQTITLTATELLGLIQTESVQLLDVRDPEEYSAGHIGGA
                     INCPMDRIAAFDGPVDQHYLLICKSGKRSKLARGIMSSKGFKANDIAGGMDAWDGLIV
                     K"
     gene            492..1049
                     /locus_tag="U1335_002202"
     CDS             492..1049
                     /locus_tag="U1335_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014917244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar O-acetyltransferase"
                     /protein_id="HEM5232614.1"
                     /translation="MPTEKEKMIAGQFYQAWDPELSQMRTQARHNMRDFNNELDGSIR
                     SQILKNWFGATGERIYMEPNFYCDYGSNIHVGEDFYANFNCTMLDVCPITIGKNAMLG
                     PNVQLLTPLHPLDPDERNSGLEYGAPITIGDNFWAGGGVTILPGVTLGDNVVVGAGAV
                     VTKSFGDNVVLAGNPARVIKEIPKK"
BASE COUNT          314 a          219 c          222 g          323 t
ORIGIN      
        1 tttttaaaaa ataaagtaaa gaaaaaggat gcttcctttc cgaaataccc ttatttcaca
       61 atcaatccgt cccaagcatc catgccacct gcaatatcat ttgccttaaa tcccttagat
      121 gacatgattc ctctggccag cttgctacgt tttccgctct tacagatgag gagatagtgt
      181 tggtcgactg gtccatcaaa tgcggcaatc cgatccatgg gacaattaat agcaccacca
      241 atatgaccag ctgaatattc ttctgggtca cgaacatcta gcaattgcac cgattcagtt
      301 tgtatcaacc caagcaattc tgtagcagtc aaagttatag tttgttcatg tttttcttgc
      361 atgattccct ctttcgttgg tttaaattaa taagaacaat accaaatctt agctggactt
      421 gtcaagaaag tttgactttt agaataagaa gtcctatgat agatatgaaa aaacaaaata
      481 ggagcaaatg tatgccaaca gaaaaagaaa aaatgattgc aggtcagttc tatcaggcct
      541 gggacccaga attgtctcaa atgcgaacgc aggctcgcca caatatgcgg gacttcaata
      601 atgaattaga tggctctata cgttctcaaa tcttgaagaa ctggtttgga gctacaggtg
      661 agcggattta catggagcca aatttctact gtgattacgg tagcaatatt catgttggtg
      721 aggattttta cgctaatttc aactgtacca tgttggatgt ttgtcccatt accattggga
      781 aaaatgccat gcttggtccc aatgtacagt tgctaactcc acttcatcca ctagatcctg
      841 atgaacgaaa ttctggcttg gaatacgggg ctccaattac catcggtgat aatttctggg
      901 ctggtggtgg ggtgacaatc ttacctggcg tgaccttggg cgataatgtc gttgttggag
      961 ctggagcagt tgttaccaaa tcattcggtg ataatgtcgt tttagcgggc aaccctgcgc
     1021 gtgttatcaa agaaatacct aaaaaataat tcttcttcgg gagaattttt tctttgcc
//
LOCUS       DASGAC010000303         1072 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.306, whole genome shotgun sequence.
ACCESSION   DASGAC010000303 DASGAC010000000
VERSION     DASGAC010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1072)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.306"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            132..>1072
                     /locus_tag="U1335_002203"
     CDS             132..>1072
                     /locus_tag="U1335_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013903623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5232615.1"
                     /translation="MPRKRNSLKHDIFVAATKNVTNNTSRTSYKRSATRFSKWSKENK
                     IKKISDITEEVLQQYHDNLQQDPKQYTPATIHTYLAPIAKASEINLNRIKKQKRTSDK
                     IVRGRKHEANEQGKKQELNSRFSRLVEFQKVVGIRRNELKNLTGQDLKIDEYGNCYIF
                     VKRGKGGKKQMQYILPKDVAIVKQTFAGIEENEPVFSEEEMNNQINLHSLRAQHSRDS
                     YFYYLEKIQENPQMRQAFSNLLINKWEEGHQKLKQESPKKYERQRKNFIYELRDKIYV
                     LRGSNKVKALASGMPIVYNRLALMAVSVLNLSHWRLSV"
BASE COUNT          431 a          208 c          182 g          251 t
ORIGIN      
        1 tgaatcttac ataaaacgtt agttctaaac ggcagcctca acgtgtattt ttccgagcat
       61 acccagctca ttcaataaaa agggtgtgag gcagtttacc aataataagc aaaaaagaaa
      121 ggagaaagaa aatgccacga aagagaaatt ccttaaaaca cgacattttc gtcgcagcaa
      181 caaagaatgt tacaaacaat acttcaagaa catcatacaa acggtcagca acacgattct
      241 caaagtggtc aaaagaaaat aaaattaaaa aaatttcaga tattacagaa gaagttcttc
      301 aacaatatca tgataatctt caacaagatc caaaacagta cactcccgca actattcata
      361 catacctcgc tccaatcgca aaagcttccg aaatcaacct caatcgcatc aaaaaacaaa
      421 aacgaacaag cgataaaata gttagaggac gaaaacatga agcgaatgaa caagggaaaa
      481 aacaagaatt gaactctcgc ttctctcgcc tagtcgaatt ccagaaagtt gttggaattc
      541 gtcggaacga attaaaaaac ctaaccggcc aagacctgaa aatagacgag tatggtaact
      601 gctatatttt cgtcaaacgt ggcaaaggcg gtaagaaaca aatgcaatac atcttgccta
      661 aggacgtggc aatcgtcaaa caaactttcg caggaattga agaaaatgaa cccgtatttt
      721 cagaagaaga gatgaacaat cagattaatt tacattcatt acgtgcacag cattcaagag
      781 atagctactt ctattacctt gagaaaattc aggaaaatcc acaaatgcga caagcatttt
      841 caaatttatt gatcaacaaa tgggaagaag ggcatcagaa attaaaacaa gaatcgccaa
      901 aaaagtacga aagacagcgt aaaaatttta tttatgaact acgcgacaaa atttatgttc
      961 ttcgcggttc aaataaagtc aaagcattag cgtcaggaat gccaattgtc tataaccgac
     1021 tagctttaat ggctgtatct gtattaaact tgtcccattg gcgtttatct gt
//
LOCUS       DASGAC010000304         1058 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.307, whole genome shotgun sequence.
ACCESSION   DASGAC010000304 DASGAC010000000
VERSION     DASGAC010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1058
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.307"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            80..>1058
                     /locus_tag="U1335_002204"
     CDS             80..>1058
                     /locus_tag="U1335_002204"
                     /inference="COORDINATES: protein motif:HMM:NF012869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5232616.1"
                     /translation="MKLLQYKGVKLATFLVVIKSILEVLVSYALVLVAVSDLTLLIRN
                     VIFIFLLYVLHGLFLYLSMEAIAKASANLKETLGQEIDTSFTDMSFTLYHQNNYGEHL
                     SRYINDVPKIIELILNKYMSRLGMLTVAISSFVALLSIHYTMGIIAILASLVMIFVPN
                     LFQNKLSTYIVGAQNAKAVYTSEMRELLQGFTMFFESHSFPLFLKKSYQSVKKYAYYV
                     YKTERFAAVMSAVLTLVNSLVSLFALAVLAYLVTQNKVSAGSLLAVTSLIPSFGSSVM
                     EYLSESEFYKSGLNLFEEKFSDAKGWTELQEIDVLTKGVQDSNKEQINKI"
BASE COUNT          330 a          151 c          197 g          380 t
ORIGIN      
        1 aagcgtaatg aaatgacaaa tttaaggatt agatattatg tatctaatcc ttttaaatac
       61 agttagttag gggaatgata tgaagctttt acagtacaaa ggtgtcaaac ttgctacttt
      121 tttagtagtc attaaatcta ttttagaggt tttggtttct tatgccttgg ttttagtcgc
      181 agttagtgac ttgacactcc ttatcagaaa tgtaatattt atttttctac tttatgtctt
      241 acatggttta tttctttatt tatccatgga ggctattgca aaagccagtg ctaatctgaa
      301 agaaacattg ggacaagaaa tagatacctc atttacggac atgtccttta ctctctatca
      361 tcaaaataat tatggcgagc atttgtcacg ctatattaat gatgtaccta aaatcatcga
      421 attgatttta aacaaatata tgtccagatt gggcatgtta acagtagcta ttagtagttt
      481 tgtggcattg ttatctattc actatacaat gggaattatc gcaattctag cctcattagt
      541 gatgatattt gtgcctaatc tttttcaaaa taagttatca acttatattg ttggggctca
      601 aaatgctaag gctgtttaca cgagtgaaat gcgtgaattg cttcagggat tcacaatgtt
      661 ctttgaatca catagttttc cgctatttct taaaaaatct taccagtctg tgaaaaaata
      721 tgcatactat gtttataaga cggaaaggtt tgcagctgtt atgagtgctg tattaaccct
      781 tgttaactca ttagtcagct tatttgcttt ggctgtacta gcatatcttg ttacacagaa
      841 taaagtaagt gcggggagtt tgcttgctgt aacttcattg ataccaagtt ttgggagctc
      901 agttatggag tatttatcag aaagtgagtt ctataaatct ggcttgaatt tgtttgaaga
      961 gaagttttct gatgcaaaag gttggacaga acttcaagaa atagatgttc tcacaaaagg
     1021 tgttcaagat agcaataagg aacaaataaa taaaattg
//
LOCUS       DASGAC010000305         1017 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.308, whole genome shotgun sequence.
ACCESSION   DASGAC010000305 DASGAC010000000
VERSION     DASGAC010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1017)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1017)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1017
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.308"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            1..186
                     /locus_tag="U1335_002205"
     CDS             1..186
                     /locus_tag="U1335_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232617.1"
                     /translation="MSQLIVPLTIPQSRRFKKKSRNDILMKNRLGKTEVTFFQSINPE
                     VMETILDKVLFYDNPTQ"
     gene            167..517
                     /gene="tnpB"
                     /locus_tag="U1335_002206"
     CDS             167..517
                     /gene="tnpB"
                     /locus_tag="U1335_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001846105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HEM5232618.1"
                     /translation="MTIRLSDLGQVFLVCGKTDMRQGIDSLAYLVKSQFNLDPFSGQV
                     YLFCRGRKDRFKALYWDGQGFWLLYKRFENGKLTWPNNEEEVRVLTSEQVDWLMKGFS
                     IIPKINVSKSRDFY"
     gene            568..774
                     /locus_tag="U1335_002207"
     CDS             568..774
                     /locus_tag="U1335_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002941576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5232619.1"
                     /translation="MSSLEKIIETQSKTIEMMANELTLLREQVEYLKQKLYGKSSEKV
                     VYQPGQLSLFGEESLPEEEADLHS"
BASE COUNT          322 a          196 c          216 g          283 t
ORIGIN      
        1 atgtcacagc tcatcgtccc attgactatt ccccaatctc gccgctttaa aaagaaaagc
       61 agaaacgata ttctgatgaa aaatcgtctc ggaaaaacgg aagtcacatt cttccaatct
      121 atcaatcctg aagtaatgga aactatcttg gataaggtac tgttctatga caatccgact
      181 cagtgattta ggtcaagtct tcttggtctg tgggaaaacg gatatgcgtc aggggattga
      241 ctctctcgcc tatcttgtca aaagtcaatt taatctggat cccttttcag gtcaggtcta
      301 tctcttctgc cgcggtcgaa aagaccgatt caaagctctt tactgggatg gacagggatt
      361 ttggttattg tataaacgtt ttgaaaatgg gaaattgacc tggccaaaca atgaagaaga
      421 ggtcagggtt ctaacttccg aacaagtaga ctggctcatg aaaggatttt ctatcattcc
      481 aaaaataaat gtttcaaaaa gtcgtgattt ctattgaaat catgactttt ctttgtgtat
      541 aatgagagaa aaagaaggag attggttatg tcatcactag aaaaaattat tgaaacacag
      601 tcaaaaacga tagagatgat ggccaatgag ctaaccctcc ttcgagaaca ggttgagtat
      661 ctgaaacaaa aactctacgg aaaatcatca gagaaagttg tgtatcaacc cggtcagctg
      721 agcttgtttg gagaggaaag cctccctgaa gaagaagctg acttacacag ttgaaacaga
      781 aacgattact tataaatgcc agaaagctaa aggagttcgt cagggttaag gctctcgctt
      841 tgtccctttt cagagttcgt gtcaacatct cagcgcagtg gttgattggc tttaacagtc
      901 tgggagactg ttaaaggtag gagataagat ttgcaaagca aatctcagca gttcgtattt
      961 catactccaa atctgaccat tacgactgtt gcgaacaaag ttcgctctat ctccgac
//
LOCUS       DASGAC010000306         1006 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.309, whole genome shotgun sequence.
ACCESSION   DASGAC010000306 DASGAC010000000
VERSION     DASGAC010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1006
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.309"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(35..937)
                     /locus_tag="U1335_002208"
     CDS             complement(35..937)
                     /locus_tag="U1335_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012774888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM5232620.1"
                     /translation="MNDKEFGQRVRQLRENASLTREQFCDDELELSVRQLTRIEAGTS
                     KPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLKFDVLRTPTYENEELMGKRADMM
                     TEIYDDYYDDLPEEEKIAIDAIQSIIDVFETKTAEFGQDILEDYFEQIQRKPQFSAND
                     LLIIQLYLINLRMEVKQSSDFQHFLDLVEKLPSQVELVESGDLFILRDVMITSVGLLG
                     QKEEFSYIPTLFEALDKIMQKTQDFQKKPILNLLKWKYELLINKDKDAATALYEEALI
                     FARIIGNAHLTAKLEEEWRKDSQL"
BASE COUNT          295 a          208 c          153 g          350 t
ORIGIN      
        1 atcttagtaa attttccaac aggacaaaaa tgtcctataa ttgactatct tttctccact
       61 cttcttctaa tttagccgtt aggtgtgcat taccaattat tcttgcaaaa ataagtgctt
      121 cttcatataa ggcagttgct gcatctttat ctttatttat taacaactca tatttccact
      181 taagcagatt aagaataggt ttcttttgaa aatcttgggt cttctgcatt atcttatcaa
      241 gtgcttcaaa gagtgtagga atatagctaa attcttcctt ttgtcccaaa agtccaacag
      301 aagttatcat cacatccctt aaaataaaca aatccccaga ttcaactaat tctacttggc
      361 ttggtaactt ttccaccaag tctaaaaagt gctgaaaatc actactctgt ttaacttcca
      421 ttctcaaatt gattaaatag agctggatta tcaacaaatc gttggctgaa aattggggtt
      481 ttctttggat ttgttcaaaa taatcttcta gaatatcttg accaaattct gctgtcttcg
      541 tttcaaatac atcaataata gattgaatgg catcaatcgc tattttctct tcttcaggca
      601 agtcatcata atagtcatca tagatttctg tcatcatatc cgcccgtttt cccatcaatt
      661 cctcattttc ataagtcggt gtacgaagta catcaaactt cagtttggaa tatcgttcag
      721 gtagcgacac ataatctggc ataagctcgt agagccccat gcctaagcgg gttgcgatat
      781 attggatttt tgaaaaagtt ggcttagaag tacctgcttc gatacgggtt agttggcgga
      841 cggagagctc aagttcgtca tcgcaaaact gttcacgtgt cagactagcg ttttctcgaa
      901 gttgacgcac acgctgccca aattccttat cgttcataaa atacctccaa atattctttt
      961 gtatattata gcaaaattac cactcaattt ccatactttt tctgtt
//
LOCUS       DASGAC010000307          994 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.310, whole genome shotgun sequence.
ACCESSION   DASGAC010000307 DASGAC010000000
VERSION     DASGAC010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..994
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.310"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..>994
                     /locus_tag="U1335_002209"
     CDS             <1..>994
                     /locus_tag="U1335_002209"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232621.1"
                     /translation="LALVEADVLALVDADVLALVEADVLALVDADVLALVDADVLADV
                     EADVLADVEADVLVLVDADVLADVEADVLALVDADVLADVEALVLALVDADVLALVDA
                     DVLALVEALVLALVEADVLALVEALVLADVEADVLALVETDVLALVEADVLALVDADV
                     LALVDADVLALVEADVLADVEALVLADVEADVLALVEALVLALVEALVLADVEADVLA
                     LVEALVLALVDADVLADVEADVLADVEALVLALVDADVLADVEADVLALVDADVLALV
                     EADVLALVDADVLADVEADVLALVEALVLALVDAEVLALVDADVLALVEADVLAL"
BASE COUNT          171 a          217 c          313 g          293 t
ORIGIN      
        1 gcttgcactt gttgaagcgg acgtacttgc gcttgttgat gcggacgtac ttgcgctagt
       61 cgaagcggat gtacttgcac ttgttgacgc ggacgtactt gcgctggttg acgctgacgt
      121 acttgctgac gttgaagctg atgtgcttgc tgacgttgaa gcagatgtgc ttgtacttgt
      181 tgacgcggac gtgctcgctg acgttgaggc ggatgtactt gcacttgtcg atgcagacgt
      241 gcttgctgac gttgaggcac ttgtacttgc gcttgtcgat gcggacgtgc ttgcacttgt
      301 cgatgcagac gtacttgcgc tggttgaagc acttgtgctt gcgctcgttg aagcggacgt
      361 gcttgcactt gttgaggcac ttgtacttgc cgacgttgaa gcggacgtac ttgcgctcgt
      421 tgaaacagac gtacttgcgc tagtcgaagc ggatgtactt gcacttgtcg atgcagacgt
      481 acttgcgctt gttgatgcgg acgtacttgc gctagttgaa gcagacgtgc ttgccgatgt
      541 tgaagcactt gtacttgccg atgttgaagc tgacgtactt gcacttgttg aagcacttgt
      601 acttgcactt gttgaggcac ttgtacttgc cgatgttgaa gcggacgtac ttgcgctagt
      661 tgaagcactt gtacttgcgc tggtcgatgc agacgtactt gccgatgttg aagcggacgt
      721 gctggctgac gttgaagcac ttgtgctggc gctggttgac gctgacgtgc ttgccgatgt
      781 tgaagcggat gtacttgcac ttgtcgatgc agacgtactt gcgctggttg aagcggatgt
      841 acttgcgctt gtcgatgcgg acgtgctcgc tgacgttgaa gcggatgtac ttgcgctggt
      901 tgaggcactt gtacttgcgc ttgttgatgc ggaagtgctt gcacttgtcg atgcagacgt
      961 acttgcgctt gttgaagcag acgtacttgc gcta
//
LOCUS       DASGAC010000308          945 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.311, whole genome shotgun sequence.
ACCESSION   DASGAC010000308 DASGAC010000000
VERSION     DASGAC010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 945)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.311"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            112..924
                     /locus_tag="U1335_002210"
     CDS             112..924
                     /locus_tag="U1335_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM5232622.1"
                     /translation="MKKKIIAIDLDGTLLNNDSQLSDYTISTIKKVRQAGHTVLIATG
                     RPYRMAEKFYQQLELDTPMINFNGSLVHIPGKKWQWEQNILIDKKYLLEFLKEEETFE
                     ADFIAGEYKNKFYITQKNLDKIDPALMGVEQITPDTLIKPELITSDPHSILMQTRATD
                     KYELAKEMNAYFKDELEINTWGGPLNILETCAKGVNKATALSYVLNLYQATPSDLIAF
                     GDEHNDVEMLDLAGTAYAMKNCSDTLRPHADRLTAFANFEDGVARELENLFL"
BASE COUNT          334 a          203 c          165 g          243 t
ORIGIN      
        1 aagtactatt ctttgacgca taaaacaatt tctcagcaat ctagctacta cctaaacatt
       61 attcactatt aaaagctaac ataacgaatc tagaaaggaa tgctactaaa tatgaagaaa
      121 aaaatcatag ctatcgattt ggacggcaca ttgctcaata atgatagcca attatctgat
      181 tataccatct caactataaa gaaggtccgc caagcaggac acaccgttct tatcgccaca
      241 ggtcgcccct atcgaatggc tgaaaaattt taccaacagc tagaactgga tactcccatg
      301 attaatttca acggttcttt agtccacatc cctggaaaga aatggcaatg ggaacaaaat
      361 attttaatcg acaaaaaata cctactcgaa tttctaaaag aagaagaaac attcgaggca
      421 gattttattg ctggtgaata caagaataaa ttctacatca ctcaaaagaa cttagacaag
      481 atcgatccgg ctctgatggg ggttgaacag attactccag atacactcat caaacctgaa
      541 ttaatcacta gtgatcctca ttccatcctt atgcagactc gtgcaactga taagtatgaa
      601 cttgcaaaag aaatgaatgc ctatttcaag gatgagttag aaatcaatac gtggggcgga
      661 ccattgaata tcctcgaaac ttgtgcaaaa ggtgtcaata aggcaaccgc tctgagctat
      721 gttcttaacc tctaccaagc cactcctagc gacttaattg ccttcggcga tgagcacaac
      781 gatgttgaga tgctagacct agcaggcaca gcctatgcca tgaaaaattg tagcgataca
      841 cttcgtccac atgccgacag attgacagca tttgctaatt ttgaagatgg tgtcgcacgt
      901 gaactagaaa acctattttt atagacatca aaaaacctga taaac
//
LOCUS       DASGAC010000309          943 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.312, whole genome shotgun sequence.
ACCESSION   DASGAC010000309 DASGAC010000000
VERSION     DASGAC010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.312"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            150..222
                     /locus_tag="U1335_002211"
     tRNA            150..222
                     /locus_tag="U1335_002211"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:183..185,aa:Ala,seq:tgc)
     gene            529..>943
                     /locus_tag="U1335_002212"
     rRNA            529..>943
                     /locus_tag="U1335_002212"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          308 a          175 c          235 g          225 t
ORIGIN      
        1 gtcttgtggg gccttagctc agctaagcga aacctttagg ttgaagcttt gtcgaaacta
       61 gcggagctag tgcacgacag gggccagcgt ctcaaaaatg atattatatc gaaacaatta
      121 aatacgttaa caggtacata aaaatgtacg gggccttagc tcagctggga gagcgcctgc
      181 tttgcacgca ggaggtcagc ggttcgatcc cgctaggctc cattatctag aatacagagt
      241 aacctagata actaagataa ctgaatacga acctaaactt cctaggaata agtcaaaacc
      301 acctagtgtc taaagacacg tcgttggtta tctccttatt ctacgaaagt tttgcgacaa
      361 gtcgcatcgg ttcttaatat cttagaactt gtccattgaa aattgaatat ctatcaaaca
      421 ttcctgatgt atctgaaagg atacattaag aaatagtaac aagaaaataa accgaaaacg
      481 ctgtgaatat ttaatgagtt ttctagttta gaaaaaacta gtaattaagg ttaagttaat
      541 aagggcgcac ggtggatgcc ttggcactag aagccgatga aggacgtgac taacgacgaa
      601 atgccttggg gagctgtaag taagcaatga tccagggatg tccgaatggg ggaacccggc
      661 aggtaatgcc tgtcactcac tactgttaag gtagtgaaga ggaagacgca gtgaactgaa
      721 acatctaagt agctgcagga agagaaagca aaagcgattg ccttagtagc ggcgagcgaa
      781 acggcaggag ggcaaaccga ggagtttact cctcggggtt gtaggactgc aatgtggact
      841 taaagagtat agaagaacta cctgggaagg taggccaaag agagtaatag cctcgtattt
      901 gaaatattct ttatacctag cagtatcctg agtacggcga gac
//
LOCUS       DASGAC010000310          941 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.313, whole genome shotgun sequence.
ACCESSION   DASGAC010000310 DASGAC010000000
VERSION     DASGAC010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.313"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..687
                     /locus_tag="U1335_002213"
     CDS             <1..687
                     /locus_tag="U1335_002213"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232623.1"
                     /translation="EKTHAARKIGGNQIMIDLTSVLCIDTNKNVSFSDEMNGRRVQIQ
                     YLDRPEEETDLERFKFFAEFWETFANNDHSPKIEGAIGLLFDSIEYFNNNSKQEFIWK
                     AVELINNVELDNFQIELINRFKQTEFVERDEFMSELYAQVYGRNNNLASNALRTIGVT
                     STRKQINGKKVSGYIIGNKQRFDTFIKLEDDEIVDTSNLNDAQLSNISTNSNDTGSSV
                     YHFHEEPLPF"
BASE COUNT          357 a          160 c          161 g          263 t
ORIGIN      
        1 gaaaaaacac atgctgctcg aaaaattggc ggaaatcaaa ttatgattga tttgacaagt
       61 gttttatgta ttgatacaaa taaaaatgtt tctttttctg acgaaatgaa tggacgcaga
      121 gttcaaattc aatatctgga tcgcccagaa gaagaaaccg atctcgagcg ttttaaattc
      181 tttgctgaat tttgggaaac ttttgcaaat aatgaccatt ctccaaaaat tgaaggagca
      241 attggtttat tattcgattc aatagaatat ttcaacaata actcaaaaca agaattcatt
      301 tggaaagcag tcgaattaat aaacaatgtt gaattagaca atttccaaat tgaattaatc
      361 aatcgattca aacaaactga attcgtggaa cgtgatgaat tcatgagcga actatatgcg
      421 caagtttatg gtagaaataa taatttggca agcaatgccc tacgaaccat cggagtcact
      481 tcaactcgaa agcaaatcaa tggaaaaaaa gtctcgggat atataattgg taacaaacaa
      541 agatttgata catttataaa attggaagac gatgaaatag ttgatacaag taatttgaac
      601 gatgctcaat tgtccaatat atcaactaat tcaaacgata caggttcgag tgtatatcat
      661 tttcacgagg agccgcttcc attctaacgc ttacatgtaa aatgctaagt gatagatgcg
      721 ccagctttaa gacaccacca ccactacctc tcgcacataa acgttcagtc aaaaatgtga
      781 tctttagaaa aatcactatc acgcaaagtg gtggtagtgg tgtctttgaa aaaacgactt
      841 gtcagacaac attttaaaaa tacacccaca gaaatagatt tagtaccata tcaattggat
      901 gcagaatgag acaatccacc ctcgtgcaga attctataaa a
//
LOCUS       DASGAC010000311          935 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.314, whole genome shotgun sequence.
ACCESSION   DASGAC010000311 DASGAC010000000
VERSION     DASGAC010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 935)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 935)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..935
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.314"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..>935
                     /locus_tag="U1335_002214"
     CDS             <1..>935
                     /locus_tag="U1335_002214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012677391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS30 family transposase"
                     /protein_id="HEM5232624.1"
                     /translation="SKEVRRNRVIKENSSTSNCEACPLLKKAPYVCNACPKKRSNCGY
                     QKQFYYAKRAQLDYEAKLSDSRTGVALNKEEFYRMDEIVSTAIQKGQHLNHIIASNEL
                     SVSRASIYRYLEKGYLSTKPIDFPRVVKFRKRRTRNLPPIPKSTREGRSYEDFQRFLT
                     EKGISYWLEMDTVTGRIGGKVLLTFNLSFCNFIFARLLDNKTANEVAKHLYAIKNDLH
                     QKETDFCELFPVILTDNGGEFARVDDIEMDVRGESKLFFCDPNRSDQKGRIEKNHTLI
                     RDILPKGSSFDNLTQEDINLVCSHVNSVRRASFNG"
BASE COUNT          294 a          225 c          192 g          224 t
ORIGIN      
        1 ctcaaaagaa gttcggagaa atagagtgat aaaagagaac tctagtactt ccaattgtga
       61 ggcctgccct ctactcaaaa aggccccata cgtttgtaat gcctgtccga aaaagagaag
      121 caactgcgga taccagaaac agttctacta cgcaaaaaga gctcagcttg attatgaagc
      181 taagctctca gactcaagaa caggcgttgc cctaaacaag gaagaattct atcgcatgga
      241 tgagattgtt tctactgcca tccaaaaggg acaacacctc aaccacatca tcgcctcaaa
      301 cgaactttcg gtatccagag cttctatcta ccgatacctt gaaaaaggct atctgtccac
      361 aaagcccatt gatttccccc gtgtcgtgaa attcagaaag cggagaacca gaaacctccc
      421 acccattcct aaatctacca gagaaggacg gtcttacgag gacttccaac gctttctcac
      481 agagaaagga atcagctatt ggctggaaat ggacaccgtt actggacgga tcggcggaaa
      541 ggtacttctc acctttaacc tctccttctg taactttatc ttcgctcgat tacttgacaa
      601 caaaacagct aatgaggtcg ctaaacatct ctacgctatc aagaatgacc tgcatcagaa
      661 agagacggac ttctgcgaac tattccctgt cattctgacc gataatggcg gtgaattcgc
      721 tagagtggac gatatcgaaa tggatgttcg tggagaatct aagctattct tctgtgaccc
      781 aaatcgttct gaccagaaag ggagaattga gaagaatcac acacttatca gagatattct
      841 tcctaaagga agttcgtttg ataacttgac acaggaggac atcaacctgg tttgttcgca
      901 tgtcaacagc gtcagacgag cttctttcaa cggaa
//
LOCUS       DASGAC010000312          868 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.315, whole genome shotgun sequence.
ACCESSION   DASGAC010000312 DASGAC010000000
VERSION     DASGAC010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 868)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 868)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.315"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            32..>868
                     /locus_tag="U1335_002215"
     CDS             32..>868
                     /locus_tag="U1335_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003000263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEM5232625.1"
                     /translation="MEIDTIYNGDSIELIKNIETESVHLILSDIPYGISFADWDILHD
                     NTNSALGGSSPAQHKTGSGFKMRGKPINGWSEADRKIPLEYQNWVESWAKEWFRVLKP
                     GASCFIFAGRRYAHRAIVGLENSGFTFRDMIGWNRSNATLKAQRISKVYERRNDFENA
                     ERLSEWRVGNLRPVFEPILWFTKPYKQGGTIADNMLIHGVGAYNLEKWQMFSEKGDNY
                     IEIPNLSTDRGLHPTQKPLALMKALIELTTQDGQLILDPFAGSGTTLVAAKELNRHYL
                     GFE"
BASE COUNT          309 a          119 c          182 g          258 t
ORIGIN      
        1 taatgaaatt aactagattg agggtaagac attggaaatt gatacaatat ataacggaga
       61 cagtatagaa ttaataaaaa atattgaaac agaaagcgtt caccttattt tatctgatat
      121 tccttacggt ataagttttg cagattggga catattacat gataatacta attctgctct
      181 cggtggttca agtccagcac aacataaaac aggtagtgga tttaaaatga gaggaaaacc
      241 cattaatggt tggagtgagg ctgatagaaa aatacctctt gaatatcaga attgggttga
      301 aagttgggca aaggaatggt ttagagtttt aaaacctggg gcaagctgtt ttattttcgc
      361 aggcagacga tatgcacata gagcaattgt aggattagaa aactcaggtt ttacttttag
      421 ggatatgata ggttggaata gaagcaatgc tactctgaaa gctcaaagaa tttcaaaagt
      481 ttacgaacgt agaaatgatt ttgaaaatgc tgaaagatta tctgaatgga gagttggaaa
      541 cttaagacct gtttttgagc ctattctatg gttcacgaaa ccctataaac aaggtggtac
      601 aattgccgat aatatgttaa ttcatggtgt aggagcatat aatttagaaa aatggcaaat
      661 gttttcagaa aagggggata actatattga gattcctaat ttatcaactg accgtggtct
      721 acatccaact caaaaaccat tagcacttat gaaagcactc attgaattaa caactcaaga
      781 tggtcaacta attcttgacc cctttgctgg aagtggtact acactagttg ctgcaaagga
      841 gttgaataga cattatttag gttttgaa
//
LOCUS       DASGAC010000313          861 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.316, whole genome shotgun sequence.
ACCESSION   DASGAC010000313 DASGAC010000000
VERSION     DASGAC010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.316"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            66..>861
                     /locus_tag="U1335_002216"
     CDS             66..>861
                     /locus_tag="U1335_002216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEM5232626.1"
                     /translation="MMKKYIMTGLVLLATMTLSACSGNATQEDTSLKDVQEKGKLIVA
                     LNPEFPPFEFRTLVDGKDTIVGADIELAKAIGQELGVEVEFSAMSFDNVLNNVQSGQS
                     DIAISGISATEERAKVYDFSIPYYTSTNKVIINKEDLAQYTSLDSLAEANIGAQKGSI
                     QEQIVKEQLPSSMVIALASNGELINQLKSQKLEAVIFEEPIAKAYVAKNDDLVILDTE
                     IKSSYSDAYAIALPKGSTALKEKVDSVITKLVESGQMDQFVQEAYEL"
BASE COUNT          293 a          132 c          183 g          253 t
ORIGIN      
        1 aagtccgatg ttttatataa aaaaacggta taagtatgca caggattatt ttaaaggaga
       61 atatgatgat gaaaaaatat attatgacgg gattggtttt gttggcaacg atgaccctaa
      121 gtgcttgtag tggaaatgct actcaagaag atacttcttt gaaggatgtt caggaaaagg
      181 gaaaactaat tgttgcattg aatccagaat ttccaccatt tgagtttaga acactggttg
      241 atggcaaaga tacaatcgtt ggagctgaca ttgagcttgc aaaagccatt ggtcaagaat
      301 tgggtgtaga agtcgaattt tcagcgatga gttttgataa tgttttgaac aatgtccagt
      361 cagggcaatc ggatattgcc atttcaggaa tttcagccac tgaagagcgt gcaaaagtgt
      421 atgatttttc cattccttac tacacctcga ccaataaagt tattataaat aaagaggatc
      481 ttgcacaata tacatcgctt gattctctag cagaggcaaa tataggagca caaaaaggtt
      541 ctattcaaga acaaattgtt aaagaacagc ttccgtcttc catggttatt gctctagctt
      601 cgaacggcga gctgattaat caattaaaat cacagaagct agaagcagtt atttttgaag
      661 agccgattgc gaaagcctat gttgccaaaa atgatgactt ggttatttta gatactgaga
      721 taaaaagtag ctattcagat gcctatgcta ttgccttgcc aaaaggaagt acagctttaa
      781 aggaaaaagt tgactctgtc attacaaaac tagtggaatc tggacagatg gatcaatttg
      841 ttcaagaagc ctatgaatta t
//
LOCUS       DASGAC010000314          845 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.317, whole genome shotgun sequence.
ACCESSION   DASGAC010000314 DASGAC010000000
VERSION     DASGAC010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.317"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            6..845
                     /locus_tag="U1335_002217"
     CDS             6..845
                     /locus_tag="U1335_002217"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015057324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEM5232627.1"
                     /translation="MMILELLKAIFLGIIEGVTEWLPVSSTGHLILVQEFVKLNQSKN
                     FLEMFNIVIQLGAILAVMTIYFKKLNPFQPGKTKRDIQLTWQLWAKVVIACIPSILIA
                     VPLDNWFEAHFNFMVPIAIALIVYGIAFIWIENRNSGVEPQVTDLAKMSYKTALLIGC
                     FQVLSIVPGTSRSGATILGAIILGTSRSVAADFTFFLGIPTMFGYSGLKAVKYFFDGN
                     SLNMEQVWILLVASVTAYLVSLVVIRFLTDFVKKHDFTVFGYYRIILGAILLVYAFIT
                     FLF"
BASE COUNT          212 a          139 c          191 g          303 t
ORIGIN      
        1 agtttattat gattttggaa ttgttgaagg ctatattttt aggaatcatt gaaggggtaa
       61 cggaatggtt gccagtttct tcaactgggc atttaatttt ggttcaagag ttcgtgaaat
      121 taaaccaaag taagaacttc ctagaaatgt ttaatattgt cattcagcta ggagcaattc
      181 tagcagttat gaccatttac tttaaaaaat tgaatccatt tcagcctgga aaaaccaagc
      241 gtgatattca attgacttgg caattatggg ccaaggttgt cattgcctgt attccgtcca
      301 tcctaattgc agttccgttg gataattggt ttgaagcgca cttcaatttt atggtaccga
      361 ttgcgattgc tttgattgtc tacggtattg cctttatttg gattgaaaac cgtaacagtg
      421 gtgtagagcc acaggtgacg gacttagcga aaatgtctta taaaactgcc ttgttgattg
      481 ggtgtttcca ggtcttaagc atcgttccgg ggactagtcg atcaggtgcg accattctgg
      541 gagcgattat tttggggacc agccgatctg tggcggcaga ttttaccttc ttccttggaa
      601 ttccaaccat gtttggttat agtggcttga aggctgttaa atatttcttt gatggcaata
      661 gcctgaatat ggagcaggta tggatcttgc tagtcgctag tgtgacggct tacttggtat
      721 ccttagttgt tattcgtttc ttgacagatt ttgttaaaaa acatgatttc acggtctttg
      781 gttactaccg catcatttta ggagcgattt tattggttta tgcctttatc acatttttat
      841 tttaa
//
LOCUS       DASGAC010000315          842 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.318, whole genome shotgun sequence.
ACCESSION   DASGAC010000315 DASGAC010000000
VERSION     DASGAC010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.318"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..490
                     /locus_tag="U1335_002218"
     CDS             <1..490
                     /locus_tag="U1335_002218"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232628.1"
                     /translation="IFADKNGDKKIRYTFSSYHSIYNKKYPDNTIEPLKVFHFNKIAN
                     YYHASDGDDYKNNVNKGFMKVTLSFIILQLLLDNRLNGVDFEINLVDTARIIINGQLQ
                     SITDMYNDFFNDSDIVDKREKFRLFTASNRDSDIEYFKKLYSDTVQRKNGEISYTESI
                     NL"
     gene            526..>842
                     /locus_tag="U1335_002219"
     CDS             526..>842
                     /locus_tag="U1335_002219"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232629.1"
                     /translation="MNSTINSNTHSDLPKSFSNGVLEILYQYATFNDVEACKDALRGH
                     GHIRPYLFDYSVNQLDIALKEVREQLVKHQPNQPDKANAYWNEMIESLNEAFSKPEEK
                     LSN"
BASE COUNT          316 a          114 c          138 g          274 t
ORIGIN      
        1 tatatttgct gataaaaatg gtgataaaaa aatacgttat actttttctt catatcattc
       61 catttacaat aagaaatatc cagacaatac catagaacct ttaaaagtat ttcatttcaa
      121 taaaattgct aactattacc atgctagtga tggggatgat tataagaaca acgtgaataa
      181 aggttttatg aaagtgacac ttagttttat aatacttcaa ttgttactgg acaataggtt
      241 aaatggtgtt gattttgaaa taaatttagt agacactgca agaattatta tcaatggtca
      301 gttacagtct atcactgata tgtacaatga tttttttaat gattctgata tagttgataa
      361 aagagaaaaa ttcagacttt ttaccgcttc aaacagagat agtgatatag agtattttaa
      421 aaaattatat tcggacactg ttcaaaggaa aaatggtgaa atatcttata cggagtctat
      481 aaatctttaa tcagtctagc aagataatca gcaaggaatt aaggaatgaa ttcaactata
      541 aatagcaaca ctcactcaga ccttcctaaa tcgttttcta atggtgtgtt ggagattctg
      601 tatcaatatg ccacattcaa tgatgttgag gcttgtaaag acgctctgag aggtcatggt
      661 catattcgac catacttatt cgattactca gttaatcaac ttgatatagc tttaaaagaa
      721 gtaagagaac aattggttaa acatcaacct aatcaacctg ataaggcaaa tgcctactgg
      781 aatgaaatga ttgaaagttt gaatgaggct tttagtaagc ctgaagaaaa attatcaaat
      841 ta
//
LOCUS       DASGAC010000316          836 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.319, whole genome shotgun sequence.
ACCESSION   DASGAC010000316 DASGAC010000000
VERSION     DASGAC010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.319"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            80..271
                     /locus_tag="U1335_002220"
     CDS             80..271
                     /locus_tag="U1335_002220"
                     /inference="COORDINATES: protein motif:HMM:NF013540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM5232630.1"
                     /translation="MTQEELANLLGKGQSYVSKYEQCQKRLDIFEVRSICLVCNKNFI
                     DFINELEYIIGGKEYDLEQ"
     gene            255..821
                     /locus_tag="U1335_002221"
     CDS             255..821
                     /locus_tag="U1335_002221"
                     /inference="COORDINATES: protein motif:HMM:NF013964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEM5232631.1"
                     /translation="MTWNNKEIETFPEDDSKWTEEQWKKLLDELIRNGLVTNREVTSL
                     VLGHLNPSQVGTSIASKKTFQSHFAPRETWKNVRQWHFDQSGKCADCGTRLELQADHI
                     VPREELGDEADTLDNLTLRCRRCNVIKRPSHLSGGLTFQTTESALMWLLFTRRPETYE
                     EFEKMCREYGLTMANIRFQEAWAMAKWL"
BASE COUNT          321 a          106 c          182 g          227 t
ORIGIN      
        1 taataatatg acgagtatat atagttataa atacagagtt ctaatttcgt tattaaaaga
       61 attgagactc agttcacaaa tgactcaaga agaattagca aacttacttg gaaaagggca
      121 atcttatgtt agtaagtatg aacaatgcca aaaaagatta gacatttttg aagtcaggtc
      181 aatatgttta gtttgcaata aaaattttat agactttatc aatgagcttg aatatataat
      241 aggaggaaaa gagtatgact tggaacaata aagaaattga aacatttcct gaggacgata
      301 gtaaatggac agaggagcag tggaaaaaat tattagatga attgatacga aatggattgg
      361 taacaaatcg agaagtgacg tcattagtgt taggacattt aaatccatcg caggttggaa
      421 cgtcaattgc gagtaaaaaa acttttcaaa gtcattttgc gcctagagaa acttggaaga
      481 atgttcgaca atggcacttt gatcaaagtg gaaagtgtgc tgactgtggc acaaggctcg
      541 aattacaagc tgaccacatt gttccaagag aggaactagg agatgaagct gatacactag
      601 ataatctaac tttaagatgc agaagatgta atgtgataaa acgaccaagt catttatcgg
      661 gaggactgac attccaaaca actgaatcag ctttaatgtg gcttctattc actagaagac
      721 ctgaaactta tgaagagttt gaaaaaatgt gtagagaata cggattgact atggcaaata
      781 ttaggttcca ggaagcttgg gcgatggcaa aatggttata aaaagaagga atgtat
//
LOCUS       DASGAC010000317          828 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.320, whole genome shotgun sequence.
ACCESSION   DASGAC010000317 DASGAC010000000
VERSION     DASGAC010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 828)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 828)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.320"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..815)
                     /gene="tilS"
                     /locus_tag="U1335_002222"
     CDS             complement(<1..815)
                     /gene="tilS"
                     /locus_tag="U1335_002222"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEM5232632.1"
                     /translation="MKDRFLKVTLDGHFFDKHKKVLVAVSGGLDSMNLFHLLYECKQV
                     LGIELGIAHINHGQREESVIEEKYLRQLAEESNVPFYLSYFEGVFSEEAARKWRYGFF
                     ATIMEKEGYTALVTAHHADDQAETVFMRLIRGGRLRHLSAIQPTQPFATGELIRPLLS
                     FKKADFEKLFHFEDCSNADFKYFRNRVRNDYLPKLKQENPKIELTLNNLAVDTNNLFQ
                     ALRDLTQGLSVTDVMSFQQQTPAVQSYLLEEYLEKFPDLQLSRPQFNEVLHILR"
BASE COUNT          253 a          162 c          137 g          276 t
ORIGIN      
        1 cgcaagatgt gtaatacttc attaaattgt ggacgagaga gctgtaaatc aggaaatttt
       61 tccaaatatt cctctaatag ataactttgt accgcaggtg tctgttgttg aaaactcatc
      121 acatctgtaa cggataaacc ctgtgtcaaa tctcttagcg cttgaaatag attatttgta
      181 tcaactgcaa gattattgag agtaagttcg attttaggat tttcctgttt taactttggt
      241 aaatagtcat ttctgaccct atttcgaaaa tatttgaaat ctgcattgct gcaatcttca
      301 aaatgaaata gcttttcaaa atctgccttt ttaaaagata aaagtggtcg gataagttcc
      361 cctgttgcaa aaggctgagt cggttgaatt gctgataagt gacgtaaacg ccctcctcta
      421 atcaatcgca taaagacagt ttctgcttga tcatctgcat ggtgggctgt cactagtgca
      481 gtgtagcctt ccttctccat gattgtagca aaaaatccat aacgccattt tcgcgccgct
      541 tcttctgaaa aaacaccttc aaaataggac agataaaagg gaacattact ttcttctgct
      601 aactgtctaa gatatttttc ctcaatgaca gattcttctc tctgtccatg attaatatgg
      661 gcaattccaa gttcaatccc taacacttgt ttgcattcgt ataaaagatg gaataggttc
      721 atagaatcta acccaccaga tacggctact agtactttct tatgtttatc aaaaaagtga
      781 ccatccagtg tcacttttaa aaatctatct ttcatttact ttaaaatc
//
LOCUS       DASGAC010000318          827 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.321, whole genome shotgun sequence.
ACCESSION   DASGAC010000318 DASGAC010000000
VERSION     DASGAC010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.321"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(65..802)
                     /locus_tag="U1335_002223"
     CDS             complement(65..802)
                     /locus_tag="U1335_002223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014713635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEM5232633.1"
                     /translation="MTELLDIYRTLKSKTWVDLTHQINEKSPHFPALPALEKKALFIH
                     KDGFFVEQFTVVGQYGTHIDPPIHFVEGARYLDEIDLKDLLLPLYVIDKSAAVIENND
                     YEITKQDILDFEAEYGPIAPESFVAFRSDWSKRWPSQDAIRNLDEDGVQRTPGWSHEA
                     LEYLIEERQVKAVGHETLDTDSGVSAAKHGGSLPEEYYLLSKDIYQLEVLANLDQVPP
                     TGALISIAFPHWEKASGSPVRAIAILP"
BASE COUNT          245 a          178 c          154 g          250 t
ORIGIN      
        1 tttaatactg ccacaaaaaa aaagaccaga ctagtgcaag aaagcacgct gtctggactt
       61 tttcttatgg taatatagca attgctcgca ctggtgaacc cgaagccttc tcccaatgag
      121 gaaaagcgat tgaaatcaat gcacctgtag gtggtacctg atccaagttt gccaatactt
      181 ccaactgata aatatctttt gataggagat agtattcttc tggtaaactt cctccgtgtt
      241 tggctgcaga tactcctgaa tcggtatcca aagtttcatg gccaactgct ttcacctgac
      301 gttcttcaat caaatattct agagcttcat gactccatcc tggtgtacgt tgaactccat
      361 cttcgtctag attacgaatg gcatcttgac taggccagcg ctttgaccaa tccgaacgaa
      421 aggcaacaaa agattctggc gctatcggac catattcagc ctcaaagtct aaaatatcct
      481 gcttagttat ctcatagtca ttattttcta taacagcagc tgatttatct ataacgtaga
      541 gtggcaggag taaatctttc aaatcaatct catcaagata acgagctcct tctacaaaat
      601 gaatcggagg atcaatatgg gttccgtact gccccacaac cgtaaattgt tcgacaaaga
      661 aaccatcctt atgaataaat agggctttct tttcgagagc tggtagcgca gggaaatgcg
      721 ggctcttttc attgatttgg tgagtcaagt ctacccaagt tttagattta agagtacggt
      781 aaatatcaag taattctgtc atagaaattc tcactttctt tttttat
//
LOCUS       DASGAC010000319          822 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.322, whole genome shotgun sequence.
ACCESSION   DASGAC010000319 DASGAC010000000
VERSION     DASGAC010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.322"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            113..742
                     /gene="upp"
                     /locus_tag="U1335_002224"
     CDS             113..742
                     /gene="upp"
                     /locus_tag="U1335_002224"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEM5232634.1"
                     /translation="MGKFQVISHPLIQHKLSILRRTSTSTKDFRELVNEIAMLMGYEV
                     LRDLPLEDVEIETPITKTVQKQIAGKKLAIVPILRAGVGMVDGLLSLVPAAKVGHIGM
                     YRDEETLQPVEYLVKLPEDIDQRHIFVVDPMLATGGSAILAVDSLKKRGASNIKFVAL
                     VSAPEGVKALQDAHPDIDIYTAALDEKLNEKGYIVPGLGDAGDRLFGTK"
BASE COUNT          242 a          148 c          166 g          266 t
ORIGIN      
        1 cctttcgagg cgatagtttt taaaaaataa gttactcagt ttttcttttc ccatgctttt
       61 ttcatgaatt tttggtaaaa tggaaaaaac aaaaaagaga ggttttatca tcatgggtaa
      121 attccaagtc atttcacacc cactcattca gcataagttg tcaatccttc gtcgtacatc
      181 tacttcaaca aaggattttc gtgagttggt taatgaaatc gcgatgctga tgggttacga
      241 agttttgcgt gacttgccac ttgaagatgt ggagattgaa acgccaatca ctaaaacagt
      301 tcagaaacaa attgcaggta aaaaattagc tatcgtacca attcttcgtg caggtgttgg
      361 tatggttgat ggtttgctaa gcttggtacc agcagctaaa gttggtcata tcggtatgta
      421 ccgcgatgaa gaaacccttc aacccgttga gtatcttgtg aaattaccag aagacattga
      481 tcaacgtcat atttttgtag ttgacccaat gcttgcgaca ggtggttcag ccatccttgc
      541 agtggattca ttgaaaaaac gtggtgcttc aaatatcaaa tttgttgctc ttgtttcagc
      601 tccagaaggt gtgaaagctc ttcaagatgc acatccagat attgatattt acacagcagc
      661 tttggatgaa aaactcaatg aaaaaggcta catcgtacca ggtttgggag atgcaggtga
      721 ccgcttgttc ggtacaaaat aattaagaaa tcagctctgc tggtttcttt ttcatttcct
      781 gaaatcgtgt tttttatttg accaattttg actattcata ta
//
LOCUS       DASGAC010000320          820 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.323, whole genome shotgun sequence.
ACCESSION   DASGAC010000320 DASGAC010000000
VERSION     DASGAC010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.323"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            153..>820
                     /locus_tag="U1335_002225"
     CDS             153..>820
                     /locus_tag="U1335_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003076949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM5232635.1"
                     /translation="MKAAYITIHDKIKEQIDNGIWKIGQRLPSERDLADEFGVSRMTL
                     RQGITLLVEEGILQRKIGSGTYVASTRVQEKMRGTTSFTELVQLQGKTPSSKLLSYTR
                     TKPNEKEVEQLGLSRGEYVIRMERVRYADNVPVVYEVASIPERLIKNVPKEDVTNHFF
                     KTLMDNGYRIGTSKQTIFARLANEKVAQYLQISKNQAILALKQVSYLEDGQAFEFVNS
                     QYVG"
BASE COUNT          267 a          145 c          170 g          238 t
ORIGIN      
        1 ttagtgttcg tatttttatt gtttttactc actttatttt aggtaatctg acttcattgt
       61 ttgcctagga gaattttacc aatagagtgt ggcctgaatt agccaaacgc ctttattttt
      121 ggtaaactag aaagaagaga aaggctagat agatgaaagc agcatatatc acaattcacg
      181 ataaaattaa ggaacaaatc gataacggaa tctggaaaat tggtcaacgt ttgccaagtg
      241 aacgcgattt agcagatgaa tttggtgttt ctcgtatgac gctccgtcaa ggaattacac
      301 ttttagtgga agaaggtatt ctacaacgca agattggttc cggtacttat gtcgccagta
      361 cacgggttca agaaaagatg cgaggcacga cttcctttac tgaattagta caactccaag
      421 gaaagacgcc aagcagcaaa ttattgtcct atacacgaac caaacctaat gaaaaagaag
      481 ttgaacaatt aggtttatcc cgtggcgagt atgttattcg aatggagcgg gtccgctatg
      541 cagataatgt tcccgtcgtg tatgaggttg ccagcattcc tgaacgcttg ataaaaaatg
      601 tccccaaaga agatgttacc aaccatttct ttaaaacact tatggacaat ggttatcgaa
      661 ttggaacgag caaacaaacc atttttgcgc gtttagccaa tgaaaaagtg gctcaatatt
      721 tacaaatttc taaaaaccag gctattctcg cactaaaaca agtatcttat ctcgaggatg
      781 gtcaagcatt tgaatttgta aatagtcagt atgttgggga
//
LOCUS       DASGAC010000321          795 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.324, whole genome shotgun sequence.
ACCESSION   DASGAC010000321 DASGAC010000000
VERSION     DASGAC010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.324"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..>795)
                     /locus_tag="U1335_002226"
     CDS             complement(<1..>795)
                     /locus_tag="U1335_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HEM5232636.1"
                     /translation="MKTMIQAILTMGGNTLAKELLDLDLPVSQSAFVQRRYQIKHQAF
                     KALFTNITSKIPISNNLPILAVDGSDVILPRNRFDKTTSFQTGPHNTPYNLIHINALY
                     NLEQEMYHDLRIQDNRNLDERAAFIDMMKTSSFKQALVIMDRGYESYNVMAHCQERNW
                     SYIIRIRDGNHSMKSGFNLPDTPCFDEKFDLNICRKQTNDMKELYRDFPNQYHFLPHN
                     ASFDFLPNSSRKSDPISFYDLHFRMVRLEIKPGFFETLVTNTDYSPE"
BASE COUNT          252 a          130 c          170 g          243 t
ORIGIN      
        1 ttctggagaa taatcggtat ttgtcaccaa agtttcaaag aaacctggct tgatttcgag
       61 gcgcaccatc cgaaaatgaa ggtcataaaa actgattgga tcactttttc gactagaatt
      121 tggcaaaaag tcaaaggaag cattatgagg taaaaaatga tactgattag ggaagtctcg
      181 atacagttct ttcatgtcat tggtttgttt gcgacagatg tttaggtcaa atttttcatc
      241 aaaacaaggg gtgtcaggga ggttaaagcc tgacttcata gaatgattcc cgtcacgaat
      301 acgaataata taggaccaat ttctttcttg acagtgtgcc atgacattgt aggattcata
      361 ccccctatcc attatcacca gagcttgttt gaaagaagag gtcttcatca tgtcaataaa
      421 agctgctcgt tcatcaagat tcctattatc ttggatgcgt aaatcatgat acatctcttg
      481 ttcaagattg taaagagcat tgatatgaat aagattgtaa ggagtgttat gtggtccagt
      541 ttgaaaagag gtcgttttat caaaacgatt tcttggtaga atcacatcac taccatcaac
      601 agctaggata gggagattat tagagattgg aattttagaa gtaatattgg taaacagggc
      661 tttaaaagct tggtgtttaa tctgataccg ccgttggaca aaggcagatt gagagacagg
      721 caaatctaaa tcaagtagct ctttggctaa ggtattaccc cccatggtca gtatagcttg
      781 aatcatggtt ttcat
//
LOCUS       DASGAC010000322          789 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.325, whole genome shotgun sequence.
ACCESSION   DASGAC010000322 DASGAC010000000
VERSION     DASGAC010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.325"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..>789
                     /gene="dprA"
                     /locus_tag="U1335_002227"
     CDS             <1..>789
                     /gene="dprA"
                     /locus_tag="U1335_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HEM5232637.1"
                     /translation="INKVLAYQEKHGKKLTLRNIAVVSECKNPVLFMENYKNLDIKSC
                     REEFNKFPSFSILDDIYPLALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGI
                     QSVQKIIKELSNRFVIVSGLARGIDTAAHIASLKNGGQTIAVIGTGLDKIYPKENREL
                     QTYIGKHHLVLTEYEPGAQPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERAL
                     EEGREVYAIPGSILDGKSDGCHHLIQEGAKCITSGIDILSDYQF"
BASE COUNT          243 a          135 c          174 g          237 t
ORIGIN      
        1 atattaataa agttttggcc tatcaagaaa aacacggtaa aaaattgacc ttacgcaata
       61 tcgctgtcgt ttctgaatgt aaaaacccag tgttatttat ggaaaactat aagaatttgg
      121 atatcaaatc ttgtcgggaa gaatttaaca agtttccttc cttttcgatt ttagatgaca
      181 tctatccttt ggcgctcaaa cagatttaca atccacctgt acttttgttt tatcaagggg
      241 atttagaatt gctggaaaaa tcaaagctgg cagttgttgg tacacgaaat gccagtaaaa
      301 atggtatcca atctgttcag aaaattatca aggaattgag caatcgtttt gtcattgtta
      361 gtggtttggc aagaggaatt gatacagctg cccacatcgc cagtttgaaa aatggaggcc
      421 aaaccattgc tgtaatcgga acaggtttgg ataagattta tccaaaagaa aatagggaat
      481 tacagaccta catcggtaaa catcatttgg ttctgactga atatgaacca ggtgcccagc
      541 cactcaaata ccatttccca gagcggaatc gcattatcgc tggtttggta gaaggtctgg
      601 tagtctgcga agctaagatg cggtcaggta gcctgattac ctgtgaacgt gctttagagg
      661 aggggcgaga ggtttatgct attccaggtt ctattttaga tggaaaatca gatggttgtc
      721 atcatttgat tcaagagggg gcgaagtgca ttacatcagg tattgacatc ctttcggact
      781 atcaatttt
//
LOCUS       DASGAC010000323          778 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.326, whole genome shotgun sequence.
ACCESSION   DASGAC010000323 DASGAC010000000
VERSION     DASGAC010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.326"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..>778
                     /locus_tag="U1335_002228"
     CDS             <1..>778
                     /locus_tag="U1335_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5232638.1"
                     /translation="LRALSRFYQNLTEDIVRAKNRLHKVLQVTFPELETILSTPSGQQ
                     YWNLVIDFPCKDFVLEFSKDELSESIRQSTSKRISDKRVTYLVEKLTALANQSYCAVK
                     KTSPIMEEVRYYAKELLRLSEQRQTVLDQMVELAQPLPEYDILLSIPGIAETTATSII
                     GELGDIRRFQSANQINAFIGIDLRHYESGNFLAKEHITKRGNPYARKILFKCIHNIAS
                     ASHTNPCHIADFYEKRKRQSQTTSTKPHTIASIHRLIRTM"
BASE COUNT          232 a          187 c          148 g          211 t
ORIGIN      
        1 acttgcgggc tctcagccgt ttctatcaga atctgaccga ggacattgtt cgagctaaaa
       61 accgtctgca caaggtctta caagtcactt ttcctgaatt ggaaactatc ttatcaacac
      121 catctggcca acaatactgg aacctagtca tagattttcc ttgcaaggac ttcgtgcttg
      181 agtttagcaa ggatgaactc tcagagagca tccgtcagtc cacttcaaaa cggatttcgg
      241 ataagcgtgt gacgtactta gttgagaagc tgacagcact agctaatcaa tcttattgtg
      301 ccgttaagaa aacctctccg atcatggaag aggttcgtta ctatgcaaaa gaattgctta
      361 gactttctga acagagacaa actgttctag accaaatggt ggaactagct cagccattac
      421 ctgaatatga cattctgctc tctattcctg gaatagctga gactactgca acaagtatta
      481 ttggtgaact gggagatatt cgccgttttc agtctgccaa tcaaatcaat gcctttatcg
      541 gtattgacct gagacactat gaatctggta acttcctcgc taaggaacac attaccaagc
      601 gtggcaatcc ctacgctaga aagattctgt tcaaatgtat tcacaatatc gcttcagcca
      661 gtcacaccaa tccttgccat atcgccgact tttatgagaa acgaaaaaga caatcgcaaa
      721 cgacttctac gaagccacac acgattgcct ccatacatcg tctcattcgg acaatgta
//
LOCUS       DASGAC010000324          765 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.327, whole genome shotgun sequence.
ACCESSION   DASGAC010000324 DASGAC010000000
VERSION     DASGAC010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.327"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            18..>765
                     /locus_tag="U1335_002229"
     CDS             18..>765
                     /locus_tag="U1335_002229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM5232639.1"
                     /translation="MNKRERLEEITRLVNKKGTVRISEIVELLNVTDMTVRRDFIELE
                     EQGVLTKIHGGARSNKAFQYREYSHSEKHIQNKEAKQEIAERAAQLIEDGDTVFLGPG
                     TTVAFLAEAIKNPRLTVITNCMPVFTILSQKKTEEFQVFLLGGEYRQVTESFVGEITN
                     TSLEKMRFSKIFFSGNGLKGTDVMTSTLAEAYTQNIAIKHSLEKYLLLDASKIGKDDF
                     TSFCDLNDVTALVTDMNAKDENYQLLSKHIE"
BASE COUNT          274 a          127 c          158 g          206 t
ORIGIN      
        1 acaacaaagg attaaacatg aataaacgag aacgactaga agaaattaca cgattggtaa
       61 acaaaaaagg cacagttcga atttctgaga tagtagaatt gctaaatgtt actgatatga
      121 ctgttcgacg tgattttatt gaattggaag agcaaggtgt cttaacaaaa attcacggtg
      181 gtgctagaag taataaggct tttcaatatc gggaatattc ccattctgag aaacacattc
      241 agaataagga agccaagcaa gagatagcgg aaagggctgc acagctgata gaagatggag
      301 acacggtatt tttaggtcca ggaacaacag tggcctttct ggctgaggcc attaaaaatc
      361 ctcgcctaac agtcatcaca aactgtatgc ctgtttttac catcctatca caaaagaaga
      421 ctgaggagtt tcaagtcttt cttctggggg gagaatatcg ccaagtgaca gaatcttttg
      481 taggagaaat taccaataca agtttagaaa aaatgcgatt cagcaagatt ttcttttcag
      541 gtaacggact taagggaact gatgtcatga cctctaccct agctgaagcc tatacgcaaa
      601 atattgccat taaacattct ttagaaaaat atctactgct agatgcctcg aaaattggaa
      661 aagatgattt tacttctttt tgtgatttga atgatgtaac tgctctagtg acagatatga
      721 atgcaaagga tgaaaattac caattattaa gtaagcacat cgaaa
//
LOCUS       DASGAC010000325          751 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.328, whole genome shotgun sequence.
ACCESSION   DASGAC010000325 DASGAC010000000
VERSION     DASGAC010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.328"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..593)
                     /locus_tag="U1335_002230"
     CDS             complement(<1..593)
                     /locus_tag="U1335_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5232640.1"
                     /translation="MRVKKSVSKNTINYAIIKDIKVGNKRTSTIVENLGNHETLQQLH
                     PEMEPMEWAKLRAKVLTELDKEDKKEILIKLHENRLLKHDQRNEYHGGYLFLQNIYYQ
                     LGLDKICQDIQKRYHFSFHLDTILSRLLYGRILSPSSKRSTAQFSQTLLEPTTIELQH
                     LYRGLEIIAKETDFIQEQLYKRSAALSSRKTDVLYYD"
BASE COUNT          221 a          127 c          147 g          256 t
ORIGIN      
        1 cagtcgtaat agagaacatc ggttttacga gaggaaagag cagctgaacg tttgtacagt
       61 tgttcttgaa taaagtcagt ttctttggca ataatttcta atcctcggta taggtgttgg
      121 agttcaatag ttgtaggttc tagaagggtt tgtgagaatt gagcagtaga acgtttagaa
      181 gatggggata gtatcctacc gtacaagagg cgtgacagaa tggtatctaa gtgaaaacta
      241 aagtgatacc tcttctgtat atcttgacag attttatcca atcccaactg ataatagata
      301 ttctgtagaa ataaatatcc cccatgatac tcatttcgtt ggtcatgttt taacagccta
      361 ttctcatgaa gtttgattaa gatttctttc ttatcttctt tatcgagttc ggttaacact
      421 ttcgctcgca attttgccca ttccattggt tccatttcgg gatgtagctg ttgaagagtt
      481 tcatgattgc cgagattttc gacaatggtt gaagttcttt tatttccaac cttgatatct
      541 ttgataatgg catagttgat agtattttta gatactgatt ttttaactct catggattcg
      601 cacctcactc tattatacca cagtacgaga aagtacgcaa gaaatatatg cgaaaatttg
      661 acaaaaaaat agcgtcacat caacgttttt gacacttttg gtggtttcaa actgtcaaac
      721 tcccgcgaga atttgacaaa aaaatagcgc t
//
LOCUS       DASGAC010000326          747 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.329, whole genome shotgun sequence.
ACCESSION   DASGAC010000326 DASGAC010000000
VERSION     DASGAC010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 747)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.329"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            10..>747
                     /locus_tag="U1335_002231"
     CDS             10..>747
                     /locus_tag="U1335_002231"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232641.1"
                     /translation="MKKIIITLIFSGLILTACDSKTNETTTSSSQTSSTEQIEESSTN
                     SSSSKNGEFQLVPYDEVHEFKNAKASRGTLDDQGIYRYDFLNEDDAVYDAMSYEEVED
                     IYPVQEQEEIEVTLGTNFTIDDYNFNLANVTENTLYKNILGEEEAGGLLALELENGEA
                     ENRRLGLPSQIGEVIKPADISYTVINTEKRAVSSGDARLSNIHVGHYGKTISKTKENL
                     GARIAYEGINLFITRTQFIENVKINNPI"
BASE COUNT          277 a          116 c          155 g          199 t
ORIGIN      
        1 agataacaaa tgaaaaagat aattattaca ctgattttta gcggtttgat tttaacagca
       61 tgtgacagta aaacaaacga gacgaccaca tcatctagtc aaactagttc aacggagcag
      121 atcgaggaaa gcagtaccaa ttcaagtagc tcgaaaaatg gtgaatttca attggttcct
      181 tatgacgaag ttcacgaatt taaaaatgca aaagcatctc gaggaacttt ggatgatcaa
      241 ggtatctatc gctatgattt tctaaatgaa gatgatgcgg tatatgatgc tatgtcctac
      301 gaagaagttg aagatatcta tcctgtccag gaacaagagg agattgaggt cactcttgga
      361 acaaacttca cgattgatga ttacaatttc aatttagcta atgtgacaga aaatacactc
      421 tataaaaata ttctcggtga ggaagaagct ggaggtttgt tagcactcga acttgaaaat
      481 ggtgaagcgg aaaatagaag gttgggatta ccatctcaaa ttggagaagt gataaaacca
      541 gcagatatta gctatactgt gatcaacact gaaaaacggg cagtttcctc aggagacgct
      601 cgattaagta atattcacgt tgggcattat ggaaaaacaa tcagtaaaac caaagaaaac
      661 ttgggagctc gaattgcata tgaaggaatt aacctcttta ttacgcgtac tcagtttatt
      721 gagaatgtaa agataaataa tccaata
//
LOCUS       DASGAC010000327          739 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.330, whole genome shotgun sequence.
ACCESSION   DASGAC010000327 DASGAC010000000
VERSION     DASGAC010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 739)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.330"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..390)
                     /locus_tag="U1335_002232"
     CDS             complement(<1..390)
                     /locus_tag="U1335_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002294574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopY/TcrY family copper transport repressor"
                     /protein_id="HEM5232642.1"
                     /translation="MSTIELNTSITDAEWEVMRVVWANDRVTSKIVISVLKEKMDWTE
                     STIKTILGRLVEKGVLNTEQEGRKFIYTANIVEKEAVRDYAEDIFNRICNKKVGNVIG
                     SIIENHVLSFDDIDRLEKILEIKKSFAV"
BASE COUNT          211 a          144 c          107 g          277 t
ORIGIN      
        1 tactgcgaaa gattttttta tctctaatat tttctctagt cgatctatat catcgaagct
       61 taagacatga ttttcaatga tgcttcctat tacatttcca actttcttat tgcaaatacg
      121 gttaaaaata tcttctgcat aatcccttac ggcttctttc tctacaatat tggcagtgta
      181 aataaacttt ctaccttctt gctctgtatt tagtacgcct ttttcaacta atcgacctaa
      241 gatcgttttg atagtggatt ctgtccagtc cattttttct ttcaatacag agatgactat
      301 tttactagtt actcgatcat ttgcccaaac tacacgcatt acttcccatt cagcatctgt
      361 gatagaagta ttaagttcta ttgtgctcat tttcctttcc tccttgtcgt ttacaaatgt
      421 aaacgaatat gttcaaaaaa agtctactat tgtaaacgaa atttgtcaag tctttttatt
      481 aaattctcac tttttggggt cagtccctta aaactgaaag ttttaaaatg aaattagcca
      541 tctacctata ctgtgagatg aaggctacga ctcattctga taagtcatcg atttcatttg
      601 atgacaggtt tggagctgtt aggcaaattt gccaaggcta atcatagcct tgctttagcc
      661 caaaaaagac atccaagaga tttctcttga atgtctgtaa acgctgatat aatcgtaggt
      721 cgctttgctt taaattata
//
LOCUS       DASGAC010000328          726 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.331, whole genome shotgun sequence.
ACCESSION   DASGAC010000328 DASGAC010000000
VERSION     DASGAC010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.331"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..>726
                     /locus_tag="U1335_002233"
     rRNA            <1..>726
                     /locus_tag="U1335_002233"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          216 a          138 c          211 g          161 t
ORIGIN      
        1 taaatactct ctagtgaccg atagtgaacc agtaccgtga gggaaaggtg aaaagtaccc
       61 cggaagggga gtgaaataga acctgaaacc gtgtgcctac aacaagttcg agcccgttaa
      121 tgggtgagag cgtgcctttt gtagaatgaa ccggcgagtt acgatatgat gcgaggttaa
      181 gttgaagaga cggagccgta gggaaaccga gtcttaatag ggcggattag tattatgtcg
      241 tagacccgaa accatgtgac ctacccatga gcaggttgaa ggtgcggtaa gacgcactgg
      301 aggaccgaac cagggcacgt tgaaaagtgc ttggatgact tgtgggtagc ggagaaattc
      361 caaacgaact tggagatagc tggttctctc cgaaatagct ttagggctag cgtcgacatt
      421 tgagaatctt ggaggtagag cactgtttgg atgagggggc catctcggtt tactgatttc
      481 agataaactc cgaatgccaa tgatttatgg tcggcagtca gactgcgagt gctaagatcc
      541 gtagtcgaaa gggaaacagc ccagaccacc agctaaggtc ccaaaataat tgttaagtgg
      601 aaaaggatgt ggggttgcac agacaactag gatgttagct tagaagcagc tattcattca
      661 aagagtgcgt aatagctcac tagtcgagtg accctgcgcc gaaaatgtac cggggctaaa
      721 acaatt
//
LOCUS       DASGAC010000329          723 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.332, whole genome shotgun sequence.
ACCESSION   DASGAC010000329 DASGAC010000000
VERSION     DASGAC010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.332"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..249
                     /locus_tag="U1335_002234"
     CDS             <1..249
                     /locus_tag="U1335_002234"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232643.1"
                     /translation="ISLRNLIKTSVYPEIANELLKADGLLKTDSSIVHPDYVANHVLT
                     PDSEINFNKNVDDRAKNKSQKVVKIKSLLDSKTNYKDV"
     gene            253..>723
                     /locus_tag="U1335_002235"
     CDS             253..>723
                     /locus_tag="U1335_002235"
                     /inference="COORDINATES: protein motif:HMM:NF025669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HEM5232644.1"
                     /translation="MEVVKDIPELLKYWNFEKNLQHDINPKNLLTSNRRKYYWACPTC
                     KFEWHGTVKIATERFKEYDTACKNCIRDNNSVLSIRSEILNYIDFNVEDINTIETLLR
                     ETLMTAKRVFQYKCPTCRLCWRDYADSLKLESREDGTLCHKGCNESLQKLRYRDV"
BASE COUNT          278 a          113 c          132 g          200 t
ORIGIN      
        1 ataagtctaa gaaatctgat taaaactagt gtctatcctg agatagcaaa tgaactttta
       61 aaagcagatg ggttgcttaa aacagactca tcaatcgtcc accctgacta tgttgcaaat
      121 catgtattaa cccctgattc agaaatcaac tttaataaaa atgttgatga ccgggctaag
      181 aataaatcac aaaaagttgt gaaaatcaag agtctgcttg acagcaaaac aaattataag
      241 gatgtataat aaatggaagt ggtaaaagat atacctgaat tattaaaata ttggaacttt
      301 gaaaaaaatt tgcagcatga tattaatccc aaaaacctcc taacaagcaa cagaagaaag
      361 tattattggg catgccctac ctgtaaattt gaatggcatg gcaccgtgaa aattgctact
      421 gaacgattca aggaatatga tacggcttgt aaaaattgca ttagagataa taatagtgta
      481 ctttcaatac gatctgaaat actaaattac attgatttca atgtggaaga tattaacaca
      541 atcgagaccc tcttacgaga aactctaatg actgctaagc gagtgttcca atataagtgt
      601 cctacatgtc gtttatgctg gagagactat gcggatagtc taaaattgga atccagagag
      661 gatggaacat tatgccataa aggctgtaat gaaagtcttc aaaaacttcg ttatagagat
      721 gta
//
LOCUS       DASGAC010000330          718 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.333, whole genome shotgun sequence.
ACCESSION   DASGAC010000330 DASGAC010000000
VERSION     DASGAC010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 718)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.333"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(1..615)
                     /locus_tag="U1335_002236"
                     /pseudo
     CDS             complement(1..615)
                     /locus_tag="U1335_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012775242.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
BASE COUNT          207 a          180 c          148 g          183 t
ORIGIN      
        1 tccaccatag gatgatgaag aggaggaaga atgattgttg tggtaatgat ggcggtcatc
       61 taccaacatc caaagcagat tacctggacc tccgccacct cggctggatt tatcaataat
      121 cataaagata atgacaacga gaataacaat cataaaccag acaaagctgt cactttctgc
      181 actggtcttc tcttccatgg ctgccaattg ttcctgaccc agactggtcc cgtagaaacg
      241 atctccgatg gattggacaa tataggttac tccgccatca tagtcttcct gacggaaaaa
      301 ttctctagca ttatctagaa tgtccttggc ttccacatct gtcaacaccg tggcagcatt
      361 gtcggaggtc tctatccgaa actccctgtc ggctatggca attaccaaga gaataccatt
      421 gtctgtccca gcaaagccaa cctgccagtc acggaaggtt gcgttggcta gactttcaat
      481 atcagtagaa agactttccg tcacatagac cccaacctgt aactgctgtt cacttgctgc
      541 ccaggtctga ttgagctgat caatactggc gatggtttca ctggaaagaa gttgggcttc
      601 atcaaccacc gtcgtatcaa ttggacgggc tggaattccc tcagctccta ccagactagg
      661 ctgacctaga ctgaataata aaagcaagaa acctaataaa tagaacagat actttttc
//
LOCUS       DASGAC010000331          707 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.334, whole genome shotgun sequence.
ACCESSION   DASGAC010000331 DASGAC010000000
VERSION     DASGAC010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 707)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.334"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..186
                     /locus_tag="U1335_002237"
     CDS             <1..186
                     /locus_tag="U1335_002237"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM5232645.1"
                     /translation="ITINTLHKIIDALEVDVPTFFDMQISKDENMDELIMMLTELPKT
                     KRDDVIQAVSQLIKTLK"
     gene            complement(260..535)
                     /locus_tag="U1335_002238"
     CDS             complement(260..535)
                     /locus_tag="U1335_002238"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232646.1"
                     /translation="MNSEELTRFLLEQTEEDLRLMYQFGLEEGDTEKEIVSFVRGRVR
                     GYCSAVFALLLKLRSSQHDVNVSDAIYDLIKLREHAEKKIEEYLSNK"
BASE COUNT          233 a          144 c          102 g          228 t
ORIGIN      
        1 atcacaataa atacgttgca caaaatcatc gatgcgttgg aagttgacgt tccaacattt
       61 ttcgacatgc aaatcagtaa agatgaaaat atggacgaat taattatgat gttaaccgaa
      121 cttccaaaaa ctaagcgtga tgatgttatc caggcagtaa gccagcttat caaaacattg
      181 aaatagactg actgaaaaat tttcctagac cctattctta atttaagaga tgggtctttt
      241 tgtctgcttc aaaatctctc tacttgtttg ataggtattc ttctatcttt ttttcagcat
      301 gttcccgtag tttgataagg tcatatatag catctgaaac attaacgtca tgttgagatg
      361 aacgaagttt cagtaacaag gcaaaaactg cactacaata cccgcgtact cgacctctca
      421 cgaatgacac aatttctttt tctgtatctc cctcttccag accaaattga tacatcaatc
      481 ttaaatcttc ctctgtctgt tctaataaaa aacgtgttaa ttcttcacta ttcaacaaaa
      541 caccgtcctt tcataagact ccataataat ttttggacgc aaaaaaacga ccaattaaga
      601 ctgatagcta ccacctcctg tctttgcaac tcgtgtgcaa agttagaaga taaatgtctt
      661 caatcattga tcgtttttga aatattctct ttttacgaat aacgaaa
//
LOCUS       DASGAC010000332          705 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.335, whole genome shotgun sequence.
ACCESSION   DASGAC010000332 DASGAC010000000
VERSION     DASGAC010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.335"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(277..>705)
                     /locus_tag="U1335_002239"
     CDS             complement(277..>705)
                     /locus_tag="U1335_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002354396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein CapI"
                     /protein_id="HEM5232647.1"
                     /translation="AFLSGICARKLIFNYGNCKRDFTYVDDIVEGVKRVMFGAPQKRS
                     GSDGLPIPPYAIYNIGNSNPENLLDFVHILSEKLVLAGVLPEDFDIEAHKKLLPMQAG
                     DVPVTYADTSDLERDFGFSPSTTLREGLRQFAKWYKEYYK"
BASE COUNT          237 a          143 c          105 g          220 t
ORIGIN      
        1 aaatcaaaat aatgattatt aaaaagaaag taaaatcaac tatgaaaatt atccatcttc
       61 ctacagttct ggcactatat ccaaattaag attttgtttg aacaatgaaa tcgaatgaat
      121 gtcttttatc atgattaact ccttttaatg taagaggaaa atccagatgc aaatctcacg
      181 aagttagtga atgttattta ctagtccttt cttactaatc ctgccacaaa ttatggcatt
      241 tgtccaaaag gctatcgccc caatagcaaa ataaaactat ttgtagtact ctttatacca
      301 tttagcaaat tggcgtaagc cttctctgag tgtggtagag gggctaaaac caaaatctct
      361 ctccaaatca gaagtatcag cataggttac tggtacatct ccagcctgca taggcaaaag
      421 tttcttatgt gcttcaatat caaaatcttc tggcaatact cctgccaaaa ctagtttctc
      481 actcaatatg tgaacaaagt ccaataagtt ttcaggattg ctattgccaa tattgtagat
      541 tgcatacggc ggaataggga gaccatcact tccacttctc ttctgcggtg cgccaaacat
      601 gacacgttta acaccttcta ctatgtcatc tacataggta aaatcacgct tgcaatttcc
      661 ataattgaaa attaattttc ttgcacatat tcccgataaa aatgc
//
LOCUS       DASGAC010000333          699 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.336, whole genome shotgun sequence.
ACCESSION   DASGAC010000333 DASGAC010000000
VERSION     DASGAC010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.336"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            296..484
                     /locus_tag="U1335_002240"
     CDS             296..484
                     /locus_tag="U1335_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008536053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEM5232648.1"
                     /translation="MAKVCYFTGRKTVSGNNRSHAMNQTKRAVKPNLQKVTVLIDGKP
                     KKVWASARALKSGKVERV"
BASE COUNT          272 a           99 c          133 g          195 t
ORIGIN      
        1 tagttgatta agtttaatct agttcctcgc tatgaagaaa tctatgatag aagtgagcag
       61 agaacagtta aaatataaac cgctccaaag tttttatgac tctaataact tagagaacga
      121 agaattatga atggggcgca aactgtagta ttaaaatatt tacctatgag tatagatact
      181 ttaaaaaaat aaaaatgaaa ataattcttg ccaagtccaa tcttttctgt tagaataata
      241 tggtatgtgg tgctagcaca tccgatatat ttgatcaaat gaggaggaag atacaatggc
      301 taaagtatgt tatttcactg gtcgtaagac tgtatcaggt aacaaccgtt cacacgctat
      361 gaaccaaact aaacgcgcag ttaaaccaaa ccttcaaaaa gtaactgttt tgattgatgg
      421 taaacctaaa aaagtttggg cttcagcacg tgcactaaaa tcaggcaaag ttgaacgcgt
      481 ataataacaa agtcgttaga aaaatctagc gacttttgtt tttggaaaaa atagcctaga
      541 tataaagtcg gtgaggagca aattcggcca ctacataata aacagaaaag aatatcagct
      601 atatagctct tcacattggt gttgaaaagt taacaaagaa ggaacgttgt caaaaataaa
      661 ctgtgtattg atgtggaaga atagagagtg tttaaaaaa
//
LOCUS       DASGAC010000334          698 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.337, whole genome shotgun sequence.
ACCESSION   DASGAC010000334 DASGAC010000000
VERSION     DASGAC010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.337"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(13..630)
                     /locus_tag="U1335_002241"
     CDS             complement(13..630)
                     /locus_tag="U1335_002241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HEM5232649.1"
                     /translation="MKIIKLFFSIKVYLWLVLSFLLLLYGVWGYGYISGEKSNQQEVS
                     VHTAIESVEQVNELVFLNTAVQKIVTAKNYTVLFGQEMPFSEKSALLIIKYKAKFGIK
                     SPVSIEHLSENRYKITLPAFEVIGLELDAEEPYTLYDKSGEILSFATEEIDTAQLITD
                     EFQSVEQEKFLADYQEDIEESAKTYYQNLFRAISPEIQLEFVFKE"
BASE COUNT          215 a          140 c          120 g          223 t
ORIGIN      
        1 taaaccagac tcttactctt taaaaacaaa ttctagttga atttcaggtg agatagccct
       61 aaataaattt tgatagtagg ttttggctga ctcttctatg tcttcctgat aatctgctaa
      121 aaacttttct tgctctaccg actgaaattc atctgtgatg agttgggcag tatcgatttc
      181 ttctgtcgca aaactcagta tctcaccact cttatcatat aaggtataag gttcttctgc
      241 atctaattcc aatccaatga cttcaaaggc tggaagggta attttgtacc gattttcaga
      301 aagatgttca atggatacag gacttttgat accaaatttt gccttgtact tgataattaa
      361 gagggctgat ttttctgaga agggcatttc ttgaccaaat aagaccgtgt agtttttagc
      421 ggtcacaatt ttctggacag ctgtatttag aaataccaat tcattgactt gctcgacaga
      481 ttcaatagcc gtatggacac tcacttcctg ctgattactc ttttcaccag agatgtagcc
      541 gtatccccat acaccataca ataacagaag gaaggacaga acaagccata gatagacttt
      601 tatactgaaa aataatttga taattttcat aatatttacc tcctctacag tatagcaaaa
      661 agacgaggct gggcaaaaag ccctgaccca cttctcag
//
LOCUS       DASGAC010000335          675 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.338, whole genome shotgun sequence.
ACCESSION   DASGAC010000335 DASGAC010000000
VERSION     DASGAC010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.338"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            16..498
                     /locus_tag="U1335_002242"
     CDS             16..498
                     /locus_tag="U1335_002242"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HEM5232650.1"
                     /translation="MKKEVTVESFELDHTIVKAPYVRLISEEVGPKGDIITNFDIRLI
                     QPNENAMDTAGLHTIEHLLAKLIRQRIDGLIDCSPFGCRTGFHMIMWGKQDSEKIAQV
                     IKSSLEEIAEGITWEDVPGTTIESCGNYKDHSLHSAKEWAKLILSQGISTDAFERKPI
                     "
BASE COUNT          224 a          141 c          147 g          163 t
ORIGIN      
        1 agtttggagg aacacatgaa aaaagaagtt accgttgaaa gttttgaatt ggaccacacc
       61 attgttaagg caccctatgt ccgcttgatt tcagaagaag ttggtccaaa aggggatatt
      121 attacaaatt ttgatatccg acttatccaa cccaatgaaa atgccatgga tacagctggt
      181 ctacatacca tcgagcatct attagctaaa ctaattcgcc agcgcatcga tgggctaatc
      241 gactgctctc ctttcgggtg tcggacaggt ttccacatga ttatgtgggg aaaacaagac
      301 tctgaaaaga ttgctcaagt catcaagtcg agtttggaag aaattgcaga aggcatcact
      361 tgggaggatg ttcctgggac aaccattgaa tcatgcggta actacaaaga ccacagcctt
      421 cattcagcta aagaatgggc caaactaatc ctttctcagg gaatctctac agatgccttt
      481 gaaagaaaac caatctaaca aaaaaacgga tacaccgctc agaatgtaga caaactccta
      541 aaaatatagt cgaatgaatt aactttcaga caaggaactg aggcgcaggt tgctagcaca
      601 gcctagtggc tgtgctaggt tggagatata acttgcaaag caagtcactt ctgcagagta
      661 cggcaacccg aaagt
//
LOCUS       DASGAC010000336          675 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.339, whole genome shotgun sequence.
ACCESSION   DASGAC010000336 DASGAC010000000
VERSION     DASGAC010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.339"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..276
                     /locus_tag="U1335_002243"
     CDS             <1..276
                     /locus_tag="U1335_002243"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232651.1"
                     /translation="YLSAYLTNAELSDTDSMEKKYIKGSRLWLYPKGVRIYRKSKGIQ
                     YPKRIKMPYQSARDMIGIEPHYTKTYKIENDNFENIVIFEQFNKKRR"
     gene            283..498
                     /locus_tag="U1335_002244"
     CDS             283..498
                     /locus_tag="U1335_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009527167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3173 domain-containing protein"
                     /protein_id="HEM5232652.1"
                     /translation="MQTITKHELQQMGFGPSQSADIVRRAKIYLVSQGFGYYSSKRLG
                     RVPISSVEHILGFPIDTKELEEKEYHA"
     gene            491..>675
                     /locus_tag="U1335_002245"
     CDS             491..>675
                     /locus_tag="U1335_002245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016177171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Arm DNA-binding domain-containing protein"
                     /protein_id="HEM5232653.1"
                     /translation="MPKISHVYQDKKSGLWYFVASLGYDEHGKRIQHWGRGFKTQIEA
                     KKGYESYMNDFSDSAVK"
BASE COUNT          252 a          111 c          132 g          180 t
ORIGIN      
        1 tatttatcag catacctgac taatgctgaa ctttcagata cagattctat ggaaaagaaa
       61 tatataaaag gaagtcgcct ttggctttat ccaaaaggtg ttagaattta ccgaaaaagt
      121 aaaggaatac agtatcctaa gagaattaaa atgccctatc agtccgcaag ggatatgata
      181 gggattgagc cacattatac aaagacttat aaaattgaaa atgataactt tgagaatatc
      241 gtcatttttg agcaatttaa caagaaaagg aggtaagcca ctatgcaaac aataacaaaa
      301 catgaacttc aacaaatggg attcggaccc tcacaatcag ctgatattgt tcgtagagcg
      361 aagatttacc ttgtcagtca aggatttggt tattattcgt ctaaacgatt agggagagtt
      421 cccatatctt cagtagaaca tatacttgga tttccaatcg acactaaaga gttagaggag
      481 aaagaatacc atgcctaaaa tttctcatgt atatcaagat aaaaaatcag gattgtggta
      541 cttcgttgct agtctcggat acgatgaaca tggcaaacga atccagcatt gggggagagg
      601 attcaagacc cagatagaag ccaaaaaagg ctacgaatct tatatgaatg atttctctga
      661 ttcggcagtc aaaaa
//
LOCUS       DASGAC010000337          673 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.340, whole genome shotgun sequence.
ACCESSION   DASGAC010000337 DASGAC010000000
VERSION     DASGAC010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.340"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..>673
                     /locus_tag="U1335_002246"
     CDS             <1..>673
                     /locus_tag="U1335_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000564846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ISAs1 family transposase"
                     /protein_id="HEM5232654.1"
                     /translation="QSPTHIVTAYDGGNRLSLGQVAVEDKSNEITAIPRLLRQLDLRK
                     SVVTIDAMGTQTDIVDVIIGGKGDYCLAVKGNQGNLHEDIDLYFRDAKIISQLTEKGC
                     HYQTIEKARSQIEVRDYWVSQDVKWLSQGHPKWKKLRGIGMAKNTIDKDGIITEEVRY
                     FILSFKGDVQTFLQVVRGHWSVESLHWLLDVVYREDKNQTLDKRATFNLNAIRKVCLH
                     LLQNMT"
BASE COUNT          202 a          115 c          158 g          198 t
ORIGIN      
        1 accaatcccc tactcatatt gtcactgctt atgatggtgg taatcggctt agtcttggtc
       61 aggtagctgt tgaggataaa agtaatgaaa tcacagccat tcctcgcctc ttgcgtcagc
      121 tagaccttcg taagagtgtt gttacgattg atgcgatggg aacacagact gatatagtgg
      181 atgtgattat cggcggtaag ggtgattatt gcttggcagt caaaggaaat caaggcaatc
      241 tccatgagga tattgacctc tattttcgtg atgccaaaat aatatctcag ttgacagaaa
      301 aaggctgtca ttatcagacc atcgaaaaag cacgtagtca gattgaagtg agggattact
      361 gggtttctca agatgtgaaa tggctgagcc aaggacaccc aaaatggaaa aaacttcgtg
      421 ggattgggat ggctaagaat accattgata aagacggtat catcacggaa gaagttcgtt
      481 actttatcct tagtttcaag ggtgatgtgc agacattttt acaggttgtt cgtggtcatt
      541 ggtcggttga aagcctacat tggttattag atgtggttta ccgagaagat aagaaccaaa
      601 ccttagataa acgagctact ttcaatttaa atgctattcg taaagtttgt cttcatcttt
      661 tacaaaatat gac
//
LOCUS       DASGAC010000338          670 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.341, whole genome shotgun sequence.
ACCESSION   DASGAC010000338 DASGAC010000000
VERSION     DASGAC010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 670)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.341"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..317
                     /locus_tag="U1335_002247"
     CDS             <1..317
                     /locus_tag="U1335_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018381141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEM5232655.1"
                     /translation="LADVEMLIETSESKREVILKDKMTADNIYKILVNFASFMDVMED
                     IDKKRLCQMLIEKVEIYDDKNKAGRWVKAIHFKLPIIEEDLEISLDNSTPVEAVVKLI
                     KK"
BASE COUNT          270 a          111 c          114 g          175 t
ORIGIN      
        1 aattagcaga tgtagaaatg ctaattgaga caagtgaatc taaacgagag gtaatcctaa
       61 aagataaaat gaccgctgat aatatttata aaatattagt taactttgca tcatttatgg
      121 acgtcatgga agatatcgac aagaagcgat tgtgtcagat gttgattgaa aaagtcgaaa
      181 tttatgatga caaaaataaa gcaggacgtt gggtaaaagc cattcatttc aagcttccaa
      241 tcattgagga agacttagaa attagtttgg acaatagtac accggttgag gcggttgtta
      301 aactaatcaa aaaataaaag gcctataaga ctatgacggg taaacccact atggtcatat
      361 agagcctttt tgagtgtaga aaaaagtccc ctacgaccta cactgaaaaa caacaaaact
      421 cacattttcc aacaccaaat tagaaacaac taacaatctc atcaaagtca ttaaaaaatg
      481 gctctataat ttctgtagtg ggtaaatcca ccatagagat tatggagcct ttttgagtat
      541 atacaaaaag tcccatatga cctataatga aaagcgacta aacaactcat tagaaagggt
      601 tcatatggaa caactttatc ataccacaga actaatcgga atcaaagaca aaaacatcaa
      661 aattctcttt
//
LOCUS       DASGAC010000339          667 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.342, whole genome shotgun sequence.
ACCESSION   DASGAC010000339 DASGAC010000000
VERSION     DASGAC010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.342"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            252..>667
                     /locus_tag="U1335_002248"
     CDS             252..>667
                     /locus_tag="U1335_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001165574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEM5232656.1"
                     /translation="MQIHYPTNVELVDGLEPHEQEFWLNELKHLDRLEENYQRKIRYH
                     QISSLDFVVSEDGRETTLQELIPSDSYSGEDNAIKQVEEQLYLEALTELDEKHRIVFK
                     AIFENGLNATKSSQLIGRSDKTAKKYYKKACKQVLK"
BASE COUNT          235 a          116 c          119 g          197 t
ORIGIN      
        1 tttcgatagt ttttgcatta tactgaacgt atcaagaaaa catcttgata actaaaattt
       61 aattacagtc caaattgatg cgcatcaaaa ggacggaact aaacagatat gaagatatga
      121 cagtaatggt catattctgc attgtattgt tccgccatgt ttttggtgtg ccttttgtca
      181 tacttggcgt tcaatacttg ctcatactgt ttctttccgc tcctaaaacg ggctgttgga
      241 aagaggcaga tatgcaaata cattacccta caaatgttga attagtagat ggtctcgagc
      301 cacatgaaca agaattttgg cttaatgagc taaaacactt agatagacta gaagaaaatt
      361 atcaacgtaa aatcagatac caccaaatat ctagtctaga ctttgttgtc tctgaagacg
      421 gacgtgagac aacactccaa gaacttattc cgagtgattc ttattctggc gaagacaatg
      481 caatcaagca agtagaagaa caactttatc ttgaagcatt aactgaatta gatgaaaaac
      541 accgtatcgt ttttaaagct atatttgaaa atggtctaaa tgctacaaaa tctagtcaac
      601 taattggtcg gtctgataag actgctaaaa agtactacaa gaaagcctgt aaacaggttc
      661 ttaaaaa
//
LOCUS       DASGAC010000340          666 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.343, whole genome shotgun sequence.
ACCESSION   DASGAC010000340 DASGAC010000000
VERSION     DASGAC010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 666)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.343"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(596..>666)
                     /locus_tag="U1335_002249"
     CDS             complement(596..>666)
                     /locus_tag="U1335_002249"
                     /inference="COORDINATES: protein motif:HMM:NF024729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HEM5232657.1"
                     /translation="YYNEKRIQQKLDYLSPVEYRRR"
BASE COUNT          206 a          149 c          116 g          195 t
ORIGIN      
        1 aggcgctccg ctattcctcg ccaaataaat tagactcaat gattttcatt aaaaaatttg
       61 agaagcaagt aacagaggtt tttgttactt tttgtcaaaa agtaacgttt ttgtagtttt
      121 gacaacccta cggttcatca aaactacaaa cgctctgccg agggctatgg gttgcacccc
      181 ttttttgacc ctcacggttc aaaaaattca ctgctttttc ggcccacaaa agtggcctcg
      241 aaaaaatcgg cgcgaactac gcaccgaaaa aattgcttca cgcaattttt gcttgcccat
      301 cttttgctaa caaaataatt tcagctgcgc taaaattatc agcaaaaaat ggtcttcgcc
      361 cgtcgcacga atcaacgtgc gatttgtccg cgaacagcgc agacaaaaaa gagagagctt
      421 ataactccct cccatgctta ttaactaggc tattactcta gttaatgttt gcaattagac
      481 atatattcat catacgagat ttccaatggc tcataaatcg aaatagtttt aagctcaatc
      541 aacggtcgtg ggactgaccc caaaaaagtg agaatttaat aaaaacaccc tagggctacc
      601 gtctccggta ttcaaccgga gacaggtagt ccaatttttg ttggattctt ttttcattat
      661 aatatt
//
LOCUS       DASGAC010000341          655 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.344, whole genome shotgun sequence.
ACCESSION   DASGAC010000341 DASGAC010000000
VERSION     DASGAC010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 655)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.344"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            72..>655
                     /locus_tag="U1335_002250"
     CDS             72..>655
                     /locus_tag="U1335_002250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232658.1"
                     /translation="MKLDIYQLSRGKIYRSTDYLRELKSKLEEWLKNIELSADTSWKD
                     DFIDVNMSGEEVQMEEIPVHEETEYLVDGIWMNRDQVDCFYKNFLGKSSKEQDDFLRK
                     ELMDNIGMQYLQIQEGEEWLSDEDLELFIDTILRQITENALNITPFLNEKIDQLLEIQ
                     HELDELLLYKKLFFEKTLHYIKQLKNPFYYFQDGR"
BASE COUNT          243 a           81 c          138 g          193 t
ORIGIN      
        1 aagaaaagga aatacaaaac gagaagcaac aggcagaagt gatattttta caggctataa
       61 aagatgctag tatgaagctg gatatttacc aactgagccg aggaaaaatt tatcgttcaa
      121 ctgattattt gcgggaatta aaatcaaaat tagaagaatg gttgaagaat atcgaacttt
      181 cagcagatac ttcttggaag gatgatttta tagatgtgaa tatgtctgga gaagaagtcc
      241 agatggaaga aataccagtt catgaagaaa cagagtatct tgttgacgga atttggatga
      301 atagggatca agtcgattgt ttctataaaa actttttagg aaaaagttcc aaggagcagg
      361 atgatttcct tcgtaaagag ttgatggata atataggaat gcagtatttg caaattcagg
      421 agggtgagga atggttatct gatgaagact tggaattatt tattgacact atcttgaggc
      481 agataacaga gaatgctttg aatattactc cctttcttaa tgaaaagatc gatcaattgt
      541 tagaaattca acatgagcta gatgaattgc ttttatacaa gaaactcttt tttgaaaaaa
      601 ctttacacta tataaaacag ctgaaaaatc ctttttatta tttccaagac ggccg
//
LOCUS       DASGAC010000342          649 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.345, whole genome shotgun sequence.
ACCESSION   DASGAC010000342 DASGAC010000000
VERSION     DASGAC010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.345"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
BASE COUNT          191 a          142 c          128 g          188 t
ORIGIN      
        1 cactaaactt tttatgggca cctctaaaaa catcaagtag ttgttaagta agccctaatt
       61 gtaagcatta tttccagagg ctgggctcaa gcccagcacc gcttctcaac gttagtgtca
      121 acatctcagc gcagtggttg attgggttta acagtccagt ggactgttaa aggttggaga
      181 taagatttgc gaagcaaatc tcagcagttc gtgttttaca ctccaaatct gtcctctact
      241 actgatgcga acagagttcg ccttatctcc aacctcaaac tgtctcccag acagttttgt
      301 agcgaacttt gttcgctcta tttccaacct caaactgtcc cccagacagt ttgagctata
      361 cgggggtggg agtttaaaag gtctgggaga ccttttaaag tgggagatat aagctgacgg
      421 cagtcagctc acataaattg atgtctgaga atagactgtt tcagctcaac aactagaaat
      481 aaagacttgt tgacgaactc ttcctttgac cagtcgagtt cttatacgaa tacgaaaact
      541 caaaagaatg caaaaactcc ctccctatga tataatcaaa gcgaaaaaat ttttgtattt
      601 aggctactag ctcgtcccta gtagtctttt tctgtgctaa aaattcaga
//
LOCUS       DASGAC010000343          631 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.346, whole genome shotgun sequence.
ACCESSION   DASGAC010000343 DASGAC010000000
VERSION     DASGAC010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.346"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            11..310
                     /locus_tag="U1335_002251"
                     /pseudo
     CDS             11..310
                     /locus_tag="U1335_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636114.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          189 a          125 c          127 g          190 t
ORIGIN      
        1 gaggataaaa atggaacaat tcaatcaaga acagttatat ggagtggtta ttcaaaccat
       61 gacagctgct agtcaacttc ctatggttaa agtcaatcgg gaagaatttt tgaagactcg
      121 ttttaaagat agtccctatc tagataaaat tattgcggat ggaccaacag cggtcttcac
      181 tacaaaagct ttgcgtaagg aagctgaaaa aatcactaat gatatgacta cgaaaacatc
      241 tttgatttct ttcgcagctg gtttaccggg gaatccattt acagcggtgg cggcaggtac
      301 tgctgatata tagtcatttg aattatcttt gatacatcgt cactttcgcc ttgccatact
      361 ttagtatagc ctgcgcctca gttccttgtc tgaaagctaa ttcattcgac tgatatgtaa
      421 agccctttgt caagtaaaaa caatcgaact gattaaaaaa tgaaaagtat ctagaaagag
      481 cctagttctt agcttctggc attggccact ctgatattcg tggattggtt acctacaggt
      541 caatggttct gccgcgagtc ctactctcta taagcgtgga tcacaattgt gccacttagt
      601 cgtttcgtag atgactcaaa ccttgaagtc c
//
LOCUS       DASGAC010000344          629 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.347, whole genome shotgun sequence.
ACCESSION   DASGAC010000344 DASGAC010000000
VERSION     DASGAC010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 629)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.347"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            1..629
                     /locus_tag="U1335_002252"
                     /pseudo
     CDS             1..629
                     /locus_tag="U1335_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002996956.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS982 family transposase"
BASE COUNT          167 a          130 c          130 g          202 t
ORIGIN      
        1 tatgagcgat ttgttcccca tgaggttcga aatcggcgaa atatccacct acaaaaacag
       61 tctgatgtcg ttgttatcgc tagttatctt tgggcaattc aagagggctg ccggacggca
      121 agtgctattt accgtgcaat tcgtcataat ctcttccctg acaacttccc tgaacgctct
      181 cgattttgcc gtatctgtca aaatcttgct caaagtattc agcgtatgcg ctattttatg
      241 gtcttagatc tttgtcaaac ctgctcgttc ggcttgattg acagctttcc ttgcgcccta
      301 tgtcacccca ttcgcaacat gagagctaca ttgttatcag aggtggcaga tattagctat
      361 aatgcgacta agaaaatcca ttactatggc ttgaaatttt cagttcttgt cagcgataat
      421 gggtttccta ttgattatgt tgtcacactc gcatctattt atgatggcga tgttgctttg
      481 gagctacttg aaaatagccc atttccaatc gtttatggag gtaaaggata tgtggataga
      541 cagattagca gactgtggca tccagttaat ttctcaactc agaaaaaaca tggtgggtta
      601 ttcatggcta gaaaattaca aaataagtc
//
LOCUS       DASGAC010000345          625 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.348, whole genome shotgun sequence.
ACCESSION   DASGAC010000345 DASGAC010000000
VERSION     DASGAC010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.348"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            23..547
                     /locus_tag="U1335_002253"
     CDS             23..547
                     /locus_tag="U1335_002253"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232659.1"
                     /translation="MKKITFLALTALSVLTLAACSTTEPSKKETIDTSSSVAQSSSEQ
                     ATDTSYKVGDTIVFKDVAEITITNIAWTDERNTVSDIVANKVLLVTYNVTNLTDEDYV
                     VGEDMDLYINNKVTESYPVGTILETIAPGRSIEGATTAFAVNEEGAAELEVEPGFQFS
                     TDMKPAIVKFDLPQ"
BASE COUNT          218 a          103 c          121 g          183 t
ORIGIN      
        1 gtaaaatttt ttggaggatt atatgaaaaa aattacattc ctagcactaa ctgctttatc
       61 ggtgctaacc cttgctgcat gttcaactac agaaccaagt aaaaaagaaa ctatcgatac
      121 ctctagtagt gttgcacagt caagctctga acaagcaacc gatacaagct ataaggtggg
      181 agataccatt gtctttaaag atgtagcgga aattacaatt acgaatattg catggactga
      241 cgaacggaat acagtaagtg atattgtagc taataaagta cttttggtaa cttataatgt
      301 gacaaactta actgatgaag attatgttgt cggtgaagat atggacctat atattaacaa
      361 taaagttaca gaaagttacc cagtagggac cattctcgaa acaattgcac ccggtcgaag
      421 tatcgaagga gcaacgactg cttttgcagt taatgaagag ggagctgctg agttagaggt
      481 tgaaccagga ttccagttta gtacagacat gaaaccagct attgtaaaat tcgatttacc
      541 acaataactt cagggaggct aacttagcct ctttttcatt ttttaacatt tatttgccaa
      601 attttcagaa aattttgata taata
//
LOCUS       DASGAC010000346          597 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.349, whole genome shotgun sequence.
ACCESSION   DASGAC010000346 DASGAC010000000
VERSION     DASGAC010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.349"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..>597)
                     /locus_tag="U1335_002254"
     CDS             complement(<1..>597)
                     /locus_tag="U1335_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5232660.1"
                     /translation="LNICRKQTNEMKQQYHNFPNHYRCLPNHTPFDFLPSSSRKSDPA
                     QFYELHFRMVRLEIKPGFFETLVTNTDYSPEKLKDLYAYRWGIETSFRDLKYSIGLTH
                     FHAKKKEGILQEIYARFINFNVCKWLTSHVAIKTSKLKQAYKICFSDAVYACRKFLRE
                     ELTSFQLETYIAKHLSIIRPNRTFQRKIKSKAPVSFTY"
BASE COUNT          171 a           94 c          133 g          199 t
ORIGIN      
        1 ctataagtga agcttacagg tgccttgctt tttatctttc tttggaacgt tcgattgggt
       61 cggatgatgg ataaatgttt ggcaatgtag gtttctaatt ggaaggaagt aagttcttct
      121 ctaagaaatt ttcgacaggc ataaacagcg tctgaaaaac aaattttata agcctgtttt
      181 aactttgatg ttttaatagc aacgtgtgag gttagccatt tacaaacatt aaagttgata
      241 aagcgagcgt agatttcttg gagaatccct tccttctttt tcgcatgaaa atgagtcaac
      301 ccaatactgt attttaggtc acgaaaactg gtctctatgc cccatctgta ggcatagaga
      361 tcttttaatt tttctggaga ataatcggtg tttgtcacca aagtttcaaa gaaaccaggc
      421 ttgatttcga gacgcaccat tcgaaaatga agttcgtaaa actgggctgg atcacttttt
      481 cggctagagc ttggtagaaa gtcaaagggt gtgtgattag gtaaacagcg atagtgatta
      541 ggaaaattgt gatactgttg tttcatctca ttggtctgtt tccgacagat gtttagg
//
LOCUS       DASGAC010000347          594 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.350, whole genome shotgun sequence.
ACCESSION   DASGAC010000347 DASGAC010000000
VERSION     DASGAC010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.350"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            115..>594
                     /locus_tag="U1335_002255"
     CDS             115..>594
                     /locus_tag="U1335_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015647429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5232661.1"
                     /translation="MGDKSETFYDISALDESNQDLLYRQVFYKECPLPQDGLEDQRLI
                     VTFSAKYRDYQRKIRERQIQRASKWLGKPADYKKKQSTDPKRFLKVTETTRDGEIAEK
                     TFIELDEERIVSEARFDGIYAVTTNLDDTIGTIVSINQRRWEIEECFRIMKHELKARP
                     "
BASE COUNT          219 a          103 c          132 g          140 t
ORIGIN      
        1 ggaaacaaac gctacaataa tatcagcggg agagcttttg tcacaactca atctgtcaaa
       61 aagttaaaga aagaagacaa agactgggct acagcttcta caggttggcg gttgatggga
      121 gataagtccg agacattcta tgatatttct gcactagatg aaagcaatca agaccttctc
      181 tatagacaag tcttttacaa agaatgtcct ttaccacaag atgggctaga agaccaacga
      241 ttgattgtaa ccttctcagc taaatacaga gattaccaaa gaaagatacg cgaacgccag
      301 attcaacgtg cttcaaaatg gctgggaaaa ccagctgact acaagaagaa acaatctaca
      361 gatcccaagc gtttcctaaa agtaacagag acaacaaggg atggagaaat agctgagaag
      421 acatttatag agttggatga agaacgaatt gtttctgaag ctagatttga tgggatttat
      481 gcggtgacga caaacttaga cgatacgatt gggaccattg tttccattaa tcagagaaga
      541 tgggaaattg aagaatgttt ccgtattatg aagcatgaat tgaaagctag acca
//
LOCUS       DASGAC010000348          561 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.351, whole genome shotgun sequence.
ACCESSION   DASGAC010000348 DASGAC010000000
VERSION     DASGAC010000348.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 561)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.351"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            76..258
                     /gene="rpmF"
                     /locus_tag="U1335_002256"
     CDS             76..258
                     /gene="rpmF"
                     /locus_tag="U1335_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000290417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEM5232662.1"
                     /translation="MAVPARRTSKAKKNKRRTHYKVAAPTVKFDETTGDYSRSHRVSL
                     KGYYKGRKIAKAASAE"
     gene            274..423
                     /gene="rpmG"
                     /locus_tag="U1335_002257"
     CDS             274..423
                     /gene="rpmG"
                     /locus_tag="U1335_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001265622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEM5232663.1"
                     /translation="MRVNITLEHKESGERLYLTSKNKRNTPDRLQLKKYSPKLRKHVI
                     FTEVK"
BASE COUNT          203 a          101 c          103 g          154 t
ORIGIN      
        1 agttggcgaa agtcatacgc attattttag atttaaaagg ggcttggccc tgacatttaa
       61 tggaggaaga aagaaatggc agtacctgca cgtcgcactt caaaagcgaa gaaaaacaaa
      121 cgtcgtactc actataaagt agcagctcca actgtgaaat ttgatgaaac tactggagat
      181 tactcacgtt ctcaccgtgt atctttgaaa ggatactaca aaggacgtaa aatcgctaag
      241 gctgcttcag ctgaataata gaagggagat accatgcgcg taaatattac acttgaacac
      301 aaagaatctg gtgagcgttt gtaccttact tcaaaaaaca aacgtaacac tccagaccgt
      361 cttcaattga aaaaatactc accaaaattg cgtaagcacg tgatttttac tgaggtgaaa
      421 tagggattca ctacacgtca ttagacggta gaaaccttga tttaatgcaa ttttggaata
      481 attgaatttc attacattgc agtacaaatc aattgaaact ctacattttt ctctacattt
      541 tttagataat aaaataaagt a
//
LOCUS       DASGAC010000349          543 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.352, whole genome shotgun sequence.
ACCESSION   DASGAC010000349 DASGAC010000000
VERSION     DASGAC010000349.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 543)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.352"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..524
                     /locus_tag="U1335_002258"
     CDS             <1..524
                     /locus_tag="U1335_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232664.1"
                     /translation="KTGVKEVEEYWASTLVDMGICDVEDNLSGCCWRCKSSFAVSACQ
                     IVNKIWPLSYSLSNKMVLCQSCQIEKPLVKNPDLVWNWLENESGQLFWAKQGMSEYER
                     RYEKSVLQELWDMGIRNSSEVESLVERVLKSVRINCQIINQSTLANVFRSEIILMQKE
                     MMENFEENNGYAS"
BASE COUNT          169 a           66 c          130 g          178 t
ORIGIN      
        1 aaaaaacagg agtcaaagag gttgaagaat attgggcaag tactttagtt gacatgggaa
       61 tttgtgacgt cgaagataat ttgagtggtt gttgctggag atgtaaatct tcttttgctg
      121 tatctgcttg tcaaattgtc aataaaatct ggccgttgtc ctattctttg tctaataaaa
      181 tggttctttg tcaatcttgt caaattgaga aacctttagt aaaaaatcct gatttggttt
      241 ggaattggct tgagaatgag agtggtcaac tgttttgggc gaagcagggg atgtctgagt
      301 atgaaagaag atatgaaaaa tcagtcttgc aagaactatg ggatatgggg attcgtaaca
      361 gttcagaagt cgaaagtcta gttgagagag tcttgaaatc tgtgcgaatc aattgtcaaa
      421 tcatcaatca atccactttg gctaatgtgt ttcgttccga aattatactt atgcagaagg
      481 aaatgatgga gaactttgaa gaaaataatg ggtatgctag ttaagtttga ttttcgatat
      541 ctt
//
LOCUS       DASGAC010000350          540 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.353, whole genome shotgun sequence.
ACCESSION   DASGAC010000350 DASGAC010000000
VERSION     DASGAC010000350.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.353"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            59..>540
                     /locus_tag="U1335_002259"
     CDS             59..>540
                     /locus_tag="U1335_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylglycerol kinase family protein"
                     /protein_id="HEM5232665.1"
                     /translation="MTLYILANPNAGSHTAEHIIFKIKESYPQLAVNIFMTVGPEDEK
                     SQIEAILKEFVSSEDQLMILGGDGTLSKALRFWPASLPFAYYPTGSGNDFAKAMNITS
                     LYRSVDAILEGKTSRIYVLNSSYGTVVNSMDFGFAAQVINGSTNSILKKILNKVKLGK
                     "
BASE COUNT          184 a           73 c          109 g          174 t
ORIGIN      
        1 atgttatact aaaaaatagc acttagctta tttttatata tttagtgatg gggaataaat
       61 gacgttatat atattagcta atcctaatgc tggtagccac actgctgaac atatcatatt
      121 caaaataaaa gaaagttatc cacagcttgc agttaatatt tttatgacag ttggtcctga
      181 ggatgaaaaa agtcaaatag aggctatttt aaaggagttt gtcagtagtg aggaccaatt
      241 aatgatttta ggtggagacg gtacactatc taaagctttg cgtttttggc cagctagtct
      301 accgtttgct tattatccaa caggatctgg aaatgatttt gctaaggcaa tgaatataac
      361 atcgctctat agaagtgtag atgccatttt agagggaaaa acaagtcgga tatatgtttt
      421 aaacagttca tacggaacgg ttgtaaacag tatggatttt ggctttgcag ctcaagttat
      481 caatggttca acgaattcaa ttttgaaaaa aattctgaac aaggtaaaac ttgggaagtt
//
LOCUS       DASGAC010000351          527 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.354, whole genome shotgun sequence.
ACCESSION   DASGAC010000351 DASGAC010000000
VERSION     DASGAC010000351.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.354"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..524
                     /locus_tag="U1335_002260"
     CDS             <1..524
                     /locus_tag="U1335_002260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010754796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5232666.1"
                     /translation="KWTDIDFVEKTLEVNKNMYYKTSKEFYITEPKTLASNRVIAVDD
                     TTLQYLFEWKEIQEKNIITDFVFSYNGLPTNKSATSHIITRHSKLAGVHRIKTHALRH
                     SHASLLISLGENALVIRDRLGHEDIKTTLGTYGHLYPNMNREVANRLNNILNITTENT
                     KKAHVKNQYTKDF"
BASE COUNT          203 a           79 c           88 g          157 t
ORIGIN      
        1 taaaatggac tgatattgat tttgttgaga aaactcttga agttaataaa aatatgtact
       61 acaaaacctc caaagaattt tatataactg agccaaagac tttagctagt aatagagtga
      121 ttgctgttga tgatacaact ttgcaatatt tgtttgagtg gaaagaaatt caagaaaaaa
      181 atattattac tgattttgtc ttctcctaca atggattacc aaccaacaaa agtgcaacaa
      241 gccacatcat tacaagacat tcaaaattgg ctggagttca cagaattaaa acacatgcac
      301 taagacattc tcatgcaagt cttttgattt ctcttggcga gaatgctttg gtaattcgtg
      361 atagactggg acatgaagat ataaagacca cgctaggcac ttatgggcac ctttatccaa
      421 atatgaatag ggaagttgca aataggttga ataatatttt gaatatcact acggaaaata
      481 caaaaaaagc acatgtaaaa aatcaataca ctaaggattt ttaattt
//
LOCUS       DASGAC010000352          517 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.355, whole genome shotgun sequence.
ACCESSION   DASGAC010000352 DASGAC010000000
VERSION     DASGAC010000352.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 517)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.355"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..>517
                     /locus_tag="U1335_002261"
     rRNA            <1..>517
                     /locus_tag="U1335_002261"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          131 a          114 c          166 g          106 t
ORIGIN      
        1 gggacggcta actacgtgcc agcagccgcg gtaatacgta ggtcccgagc gttgtccgga
       61 tttattgggc gtaaagcgag cgcaggcggt ttgataagtc tgaagtaaaa ggctgtggct
      121 taaccatagt acgctttgga aactgtcaaa cttgagtgca gaaggggaga gtggaattcc
      181 atgtgtagcg gtgaaatgcg tagatatatg gaggaacacc ggtggcgaaa gcggctctct
      241 ggtctgtaac tgacgctgag gctcgaaagc gtggggagcg aacaggatta gataccctgg
      301 tagtccacgc cgtaaacgat gagtgctagg tgttgggtcc tttccgggac tcagtgccgc
      361 agctaacgca ttaagcactc cgcctgggga gtacgaccgc aaggttgaaa ctcaaaggaa
      421 ttgacggggg cccgcacaag cggtggagca tgtggtttaa ttcgaagcaa cgcgaagaac
      481 cttaccaggt cttgacatcc cgatgaccgc cctagag
//
LOCUS       DASGAC010000353          496 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.356, whole genome shotgun sequence.
ACCESSION   DASGAC010000353 DASGAC010000000
VERSION     DASGAC010000353.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.356"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..>496
                     /locus_tag="U1335_002262"
     rRNA            <1..>496
                     /locus_tag="U1335_002262"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          142 a          115 c          138 g          101 t
ORIGIN      
        1 tcacactgcc gagaaaagct tctagcgatg tatcatactc tacccgtacc gcaaaccgac
       61 acaggtagtc gaggcgagta gcctcaggtg agcgagagaa ctctcgttaa ggaactcggc
      121 aaaatgaccc cgtaacttcg ggagaagggg tgctgactta aagtcagccg cagtgaatag
      181 gcccaagcaa ctgtttatca aaaacacagc tctctgctaa atcgtaagat gatgtatagg
      241 gggtgacgcc tgcccggtgc tggaaggtta agaggagggt ttagcgcaag cgaagatctg
      301 aattgaagcc ccagtaaacg gcggccgtaa ctataacggt cctaaggtag cgaaattcct
      361 tgtcgggtaa gttccgaccc gcacgaaagg cgtaatgatt tgggcactgt ctcaacgaga
      421 gactcggtga aattttagta cctgtgaaga tgcaggttac ccgcgacagg acggaaagac
      481 cccatggagc tttact
//
LOCUS       DASGAC010000354          496 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.357, whole genome shotgun sequence.
ACCESSION   DASGAC010000354 DASGAC010000000
VERSION     DASGAC010000354.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.357"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(107..289)
                     /locus_tag="U1335_002263"
     CDS             complement(107..289)
                     /locus_tag="U1335_002263"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232667.1"
                     /translation="MNKIDQLNNIELIDEKSLTNIEGGKGGKVNIGISVSVSWDQIRD
                     TLRGIGDGIFGHRRKY"
     gene            complement(300..464)
                     /locus_tag="U1335_002264"
     CDS             complement(300..464)
                     /locus_tag="U1335_002264"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232668.1"
                     /translation="MSKITKMNKFMSVSDQELIDLRGGERRDYDWGYSIGKAIRDGIN
                     GTINFVKKLF"
BASE COUNT          168 a          107 c           52 g          169 t
ORIGIN      
        1 tgatatagtc ataaaatgtt gctatttagt aatgggcaac cattttttac cattgacgag
       61 aaaaactggc tcgaagccat aacaaaaaaa gctgatgctc agctttttag tactttcttc
      121 gatgaccaaa tatgccatct ccaattccac gtaaagtatc tcggatttga tcccaactca
      181 ctgagacact aattccgata ttaactttac ctcctttacc tccctcaata ttagtaagtg
      241 acttttcatc aattaactca atgttattca attgatcaat tttattcata attatcctcc
      301 tagaaaagtt tcttcacaaa attaattgtt ccattaatac catcacgaat ggctttacca
      361 atactatagc cccaatcata atcacgacgt tctccacctc gtaaatcaat aagttcctga
      421 tcggatactg acataaattt attcattttt gttattttac tcatataaac ttacctcaac
      481 taataaaatt aaaaaa
//
LOCUS       DASGAC010000355          464 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.358, whole genome shotgun sequence.
ACCESSION   DASGAC010000355 DASGAC010000000
VERSION     DASGAC010000355.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 464)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.358"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            93..>464
                     /locus_tag="U1335_002265"
     CDS             93..>464
                     /locus_tag="U1335_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5232669.1"
                     /translation="MFHFTTLFIGMDVHKESFSLCYYDMMANQFKHSTKVGPNVSYIV
                     NYVNELRRLYGQDAEVLCGYEAGCLGFTLYHQLQAHGIPCIVMAPTTVMKEGSKRVKT
                     DKKDAAQLAKALAFRSYRPVHI"
BASE COUNT          139 a           91 c           96 g          138 t
ORIGIN      
        1 cccagttgag aattcgtgga tttacctgta cactagaata aaaaaacaat caacttctaa
       61 caggaattac cacactcaat tggaggtctt atatgtttca ttttaccaca cttttcatcg
      121 gaatggatgt tcacaaagaa agtttttcac tctgctatta tgatatgatg gcgaatcaat
      181 tcaaacatag cactaaagtt ggtccaaatg ttagctatat tgtgaactat gtgaatgagc
      241 ttcgtcgttt atatggtcaa gatgcagaag tgttatgtgg ctacgaagcc ggatgtcttg
      301 gatttaccct atatcaccag ctacaagctc acgggattcc ctgtatcgtg atggcgccta
      361 caacggtgat gaaggaagga tctaagcgtg ttaagactga taaaaaagat gcagctcagc
      421 tcgcaaaagc tctggccttt cgtagctatc ggcctgttca tatt
//
LOCUS       DASGAC010000356          456 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.359, whole genome shotgun sequence.
ACCESSION   DASGAC010000356 DASGAC010000000
VERSION     DASGAC010000356.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.359"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..437
                     /locus_tag="U1335_002266"
     CDS             <1..437
                     /locus_tag="U1335_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016647790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM5232670.1"
                     /translation="KNPKVSLLLVGQGKLFSEYQEKIHNYNLQNNVHLLGYRDDVVDL
                     LQIADIAISSSLREGLPVNLLEAMGVALPLLVSDCRGNRDLVTDNGIVIRDNIAKEWE
                     KTILDLFDSPSKLREFGLNSLSHVKDFSEEQIRKKMLEIYTD"
BASE COUNT          157 a           55 c           92 g          152 t
ORIGIN      
        1 aaaaaaatcc aaaagtttca ttattattgg ttggacaagg aaagctcttt tctgaatatc
       61 aagaaaaaat acataattat aatttacaaa ataatgttca tttgcttgga taccgtgatg
      121 atgttgttga tttattgcaa atagctgata ttgcaatatc aagctcattg cgagagggct
      181 taccagtaaa tttgttggag gccatggggg ttgcccttcc tttgcttgtt tcagattgtc
      241 gtggaaatcg tgatttagtg acagataatg gcattgtgat acgcgataat atagcgaaag
      301 aatgggaaaa gacaatatta gatctttttg attcaccgtc aaaattgaga gaatttggtt
      361 tgaatagttt gagtcatgta aaagattttt cggaagaaca aattagaaaa aaaatgctgg
      421 agatttatac tgattaagta tcatcattct taaact
//
LOCUS       DASGAC010000357          437 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.360, whole genome shotgun sequence.
ACCESSION   DASGAC010000357 DASGAC010000000
VERSION     DASGAC010000357.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 437)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 437)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..437
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.360"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..178
                     /locus_tag="U1335_002267"
     CDS             <1..178
                     /locus_tag="U1335_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012677188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5232671.1"
                     /translation="TNAMELPYSNAKLEATNKLIKDIKRQAFGFRNFTNFKTKIYIAL
                     NIKNERTNFVLSRC"
     gene            complement(269..340)
                     /locus_tag="U1335_002268"
     tRNA            complement(269..340)
                     /locus_tag="U1335_002268"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(305..307),aa:Glu,seq:ttc)
     gene            complement(363..435)
                     /locus_tag="U1335_002269"
     tRNA            complement(363..435)
                     /locus_tag="U1335_002269"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(400..402),aa:Asn,seq:gtt)
BASE COUNT          143 a          112 c           79 g          103 t
ORIGIN      
        1 cacgaacgcc atggagcttc catattccaa cgctaagctg gaagcgacca ataaactcat
       61 caaagacatc aagaggcaag cgtttggctt taggaacttt acgaacttta aaaccaagat
      121 atatattgct ttaaacatca aaaatgagag aacgaatttc gtcctctcta ggtgttagct
      181 tttcgtctac ccactacagt tgacaatgag ccaattaaag ccccttcacc tcaaaaaaca
      241 aaaaagagac ctaaacagcc tccaaatata gtccgtacgg gattcgaacc cgtgttaccg
      301 ccgtgaaaag gcggtgtctt aaccccttga ccaacggacc atatactaaa gatttctctt
      361 tactccgcca acagggctcg aacctgtgac atcatgatta acagtcatgc gctctaccaa
      421 ctgagctatg gcggaat
//
LOCUS       DASGAC010000358          435 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.361, whole genome shotgun sequence.
ACCESSION   DASGAC010000358 DASGAC010000000
VERSION     DASGAC010000358.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.361"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            1..340
                     /locus_tag="U1335_002270"
                     /pseudo
     CDS             1..340
                     /locus_tag="U1335_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014637537.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          179 a           58 c           99 g           99 t
ORIGIN      
        1 gtttaaaaaa atcccaaaaa tcccaaaaaa ccgattgaca aagtatataa gtcgtgatag
       61 aatgactgag ttgtctcttg agggactggt taatagagga acgaaaaaaa gtttcgaaaa
      121 agtgttgaca agaccaacag aagatgatag aatgaatgag ttgtctcttg cggggctagt
      181 taatagcgaa acgaaaaaaa gtttcgaaaa agtgttgaca agcccatcag aagatgatag
      241 aatgattgag ttgtctcttg agtaactagt taacagagga acgaaaaaaa gtttcgaaaa
      301 agtgttgaca aagttcacaa gaaatgataa actaagatag ttgtcgcgag agcgcgataa
      361 cgacaagacc tttgaaaatt aaagaagacg aaccaaacgt gcagggtgat ttatctaagg
      421 ataaatcgtc aatga
//
LOCUS       DASGAC010000359          429 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.362, whole genome shotgun sequence.
ACCESSION   DASGAC010000359 DASGAC010000000
VERSION     DASGAC010000359.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 429)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 429)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.362"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            38..382
                     /locus_tag="U1335_002271"
     CDS             38..382
                     /locus_tag="U1335_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010754800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232672.1"
                     /translation="MIRPILNAEETVGGGKILVNQKPYFLYVEENGKRVKTETVAGYT
                     YECVAIEKQFERFNVKIEHSKPLFQDSKAIPQNCLVEFLGLTGSAYVAGDSYKYVACS
                     FKAEGIEVVDDE"
BASE COUNT          155 a           63 c           90 g          121 t
ORIGIN      
        1 tttatgagag ggaaaaatat aacgaggagg actaacaatg attagaccaa ttttgaatgc
       61 agaagaaaca gtaggtggag gaaaaatcct tgtcaatcaa aaaccctatt ttctttatgt
      121 agaagaaaat ggtaagcgtg taaaaacaga aacagttgct ggctacacat acgagtgcgt
      181 agccattgaa aaacagtttg aacgttttaa tgtaaagatt gaacactcta aacctctttt
      241 tcaagattca aaagcaattc ctcagaattg tttagttgaa tttctaggac tgacaggcag
      301 tgcgtacgtt gccggggata gttacaaata tgtggcttgc tctttcaaag cagaagggat
      361 tgaggtggta gatgatgaat aatagaaatt acaaaatgat aactgtattt actaaacccc
      421 ctattcttt
//
LOCUS       DASGAC010000360          419 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.363, whole genome shotgun sequence.
ACCESSION   DASGAC010000360 DASGAC010000000
VERSION     DASGAC010000360.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 419)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.363"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..>419
                     /locus_tag="U1335_002272"
     CDS             <1..>419
                     /locus_tag="U1335_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM5232673.1"
                     /translation="LYRQVFYKECPLPQDGLEDQRLIVTFSAKYRDYQRKIRERQIQR
                     ASKWIGKPADYKKKQSTDPKRFLKVTETTRDGEIAEKTFIELNEERIVSEARFDGIYA
                     VTTNLDDTIETIVSINQRRWEIEECFRIMKHELKARP"
BASE COUNT          160 a           71 c           86 g          102 t
ORIGIN      
        1 ttctctatag acaagtcttt tacaaagaat gccctttacc acaagatggg ctagaagacc
       61 aacgattgat tgtaaccttc tcagctaaat acagagatta ccaaagaaag atacgcgaac
      121 gccagattca acgtgcttca aaatggattg gaaaaccagc tgactacaag aagaaacaat
      181 ctacagatcc taagcgtttc ctaaaagtaa cagagacaac aagggatgga gaaatagctg
      241 agaagacctt tatagagttg aatgaagaac gaattgtttc tgaagctaga tttgatggaa
      301 tttatgcggt aacaacaaac ttagacgata cgattgagac cattgtttcc attaatcaga
      361 gaagatggga aattgaagaa tgtttccgta ttatgaagca tgaattgaaa gctagacca
//
LOCUS       DASGAC010000361          405 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.364, whole genome shotgun sequence.
ACCESSION   DASGAC010000361 DASGAC010000000
VERSION     DASGAC010000361.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 405)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.364"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
BASE COUNT          115 a           61 c           72 g          157 t
ORIGIN      
        1 acctatcatt ttatctataa gggatacttt cctacaaagg atgtagaacg agtcaattcc
       61 ttgttttcta tattgacctc tcaagtaaat cattggaatt tatggaatgg tcgatttgtt
      121 gcacatacga tggtgcaaat cgttcttatg ttccctaata tcgttttcga tattctgaat
      181 acagtggcat tcttagtact aggtttgttt gtcgaaagat ttgtagtcag actagattct
      241 actaaaaaac aggggaatcc tgaactgctt gtactaattt atctattatt atggtggttt
      301 ttacccgaaa ttggaaaaac agttttatgg gtttcagggg ctggaaacta cttatggacc
      361 tctttaattt atcttagttt cttttatata attttattta aaagc
//
LOCUS       DASGAC010000362          372 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.365, whole genome shotgun sequence.
ACCESSION   DASGAC010000362 DASGAC010000000
VERSION     DASGAC010000362.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.365"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..>372
                     /locus_tag="U1335_002273"
     rRNA            <1..>372
                     /locus_tag="U1335_002273"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT           88 a          101 c          100 g           83 t
ORIGIN      
        1 tgtcgtcagc tcgtgtcgtg agatgttggg ttaagtcccg caacgagcgc aacccctatt
       61 gttagttgcc atcattcagt tgggcactct agcgagactg ccggtaataa accggaggaa
      121 ggtggggatg acgtcaaatc atcatgcccc ttatgacctg ggctacacac gtgctacaat
      181 ggctggtaca acgagtcgca agtcggtgac ggcaagctaa tctcttaaag ccagtctcag
      241 ttcggattgt aggctgcaac tcgcctacat gaagtcggaa tcgctagtaa tcgcggatca
      301 gcacgccgcg gtgaatacgt tcccgggcct tgtacacacc gcccgtcaca ccacgagagt
      361 ttgtaacacc cg
//
LOCUS       DASGAC010000363          342 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.366, whole genome shotgun sequence.
ACCESSION   DASGAC010000363 DASGAC010000000
VERSION     DASGAC010000363.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.366"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
BASE COUNT          116 a           60 c           78 g           88 t
ORIGIN      
        1 tccattcctc taaacagtcg aaatagcgaa gtcttttcga ttgagcagag gaatccaaaa
       61 ggcaggtgtt cgcacctgcc tttgaagatt aatgacaaag tatctgcttt gatggctggt
      121 aaggacaacc cacagaaaat tcgataaccc aaatagccat gaaatgcagg gtagttaatc
      181 gttttctgat attcggaaat caaagtaccc ttgctgaaaa aagtatcagt acggacatca
      241 gagggcgatt tgcaactagg ggtgtactgg gtaaaagtag gagagaacgg agaagagtac
      301 cgattgcttt taaaaacttt tgtttgaata aatttcaaaa cc
//
LOCUS       DASGAC010000364          336 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.367, whole genome shotgun sequence.
ACCESSION   DASGAC010000364 DASGAC010000000
VERSION     DASGAC010000364.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.367"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..>336)
                     /locus_tag="U1335_002274"
     CDS             complement(<1..>336)
                     /locus_tag="U1335_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006270038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HEM5232674.1"
                     /translation="HNAVIAQNNKNVDILLFGKGIAFGKKVGDAIPPSSIEKSFLLKN
                     SDNMNRFTELFIDVPIELVYVCEKIINLGKITLGNHFDEIIYINLTDHINSSIERHKE
                     GVVVTNPLRW"
BASE COUNT          108 a           68 c           43 g          117 t
ORIGIN      
        1 ccatctaaga gggttcgtaa cgactactcc ttccttatgt ctttctatac tagaattgat
       61 atgatctgtc aaattgatgt aaataatctc atcaaaatga tttccaagtg ttatcttgcc
      121 taaatttatt attttctcac aaacataaac caactcaata ggaacatcga taaatagttc
      181 cgtaaagcga ttcatattat cgctattctt gagcaaaaaa cttttttcta tcgaagaagg
      241 tgggatcgca tctccaacct tctttccaaa tgcaattcct ttaccaaaca acaagatatc
      301 aacgttctta ttattttgtg ctatgactgc attatg
//
LOCUS       DASGAC010000365          336 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.368, whole genome shotgun sequence.
ACCESSION   DASGAC010000365 DASGAC010000000
VERSION     DASGAC010000365.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.368"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
BASE COUNT           97 a           80 c           56 g          103 t
ORIGIN      
        1 cgtggattgg ttacctacag gtcaatggtt ctgccgcgag tcctactctc tataagcgtg
       61 gatcacaatt gtgccactta gtcgtttcgt agatgactca aaccttgaag tcctaaactc
      121 cttcaagata ctttccattc aaacatgatt tcaatcctta tttctgtcca aattcaccca
      181 gtgattttgg atagaaatag ggattcctca tcgctctgcg atgataaaac ttaatggtca
      241 aaagtgtaca tgaaaacaag cgctaacttc aagctattct tcctgtcatc atcccccaaa
      301 taaaaccaga caattctcgt gcaatagctg ttttag
//
LOCUS       DASGAC010000366          330 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.369, whole genome shotgun sequence.
ACCESSION   DASGAC010000366 DASGAC010000000
VERSION     DASGAC010000366.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.369"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
BASE COUNT          103 a           58 c           66 g          103 t
ORIGIN      
        1 tcggctgtcc ttctcatgac accttggaac gtgctgtgag tatagtggtt tgaattaaga
       61 aaaggacaaa tttaagttat agtgttaata acccactcct aaaataactc tagagttctt
      121 aaattgacaa acttagatat gtcctgtttc taattcactt gactataaat ccagatttca
      181 taaaagagct gaaactgtcc ttcgaatcct cttcagaaac ggctaatttt tccaaattga
      241 gtgtcgttga tgggaaaaac gattttgggg aacgagggga atatagctcc ccaacttata
      301 ttgttactgc atatgatggg ggacaatcgg
//
LOCUS       DASGAC010000367          317 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.370, whole genome shotgun sequence.
ACCESSION   DASGAC010000367 DASGAC010000000
VERSION     DASGAC010000367.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.370"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..>317)
                     /locus_tag="U1335_002275"
     rRNA            complement(<1..>317)
                     /locus_tag="U1335_002275"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT           71 a          104 c           53 g           89 t
ORIGIN      
        1 aatgttacag atacaagcat ttgactcata tcacacctca ctgcttagac gggctcttcc
       61 aatcgcccgc tttagttagc ctactgcgtc cctccatcac ttcatactct agtacaggaa
      121 tatcaacctg ttgtccatcg gatacaccct tcggtctctc cttaggtccc gactaaccca
      181 gggcggacga gccttcccct ggaaacctta gtcttacggt ggatgggatt ctcacccatc
      241 tttcgctact cataccggca ttctcacttc tatgcgttcc agcactcctc acggtatacc
      301 ttcttcacac atagaac
//
LOCUS       DASGAC010000368          308 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.371, whole genome shotgun sequence.
ACCESSION   DASGAC010000368 DASGAC010000000
VERSION     DASGAC010000368.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 308)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 308)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..308
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.371"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            <1..>308
                     /locus_tag="U1335_002276"
     CDS             <1..>308
                     /locus_tag="U1335_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232675.1"
                     /translation="PGEKVGYRNFLKVSTSTAPLAGAVFQVLEEVDGQLRQVMIDGKP
                     YHLTSENGGHLKVGPLPYGSYYLKEIKAPKGYLLSQDTIPFEISLDSHVSDVIRIRNK
                     P"
BASE COUNT           80 a           70 c           78 g           80 t
ORIGIN      
        1 ccgggggaaa aagtgggtta taggaatttt ctcaaggttt ctaccagtac agcccccttg
       61 gcaggagcgg ttttccaagt cttggaagag gtggacggtc aactgaggca agtgatgatt
      121 gacggcaaac cctatcatct gacctcggaa aatggtggtc acctcaaagt aggaccgctc
      181 ccctatggta gttactatct taaggaaatc aaggctccca agggctatct tctcagtcag
      241 gataccattc cctttgagat tagtctggat tcgcatgttt cggatgtcat ccgtattagg
      301 aacaaacc
//
LOCUS       DASGAC010000369          306 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.372, whole genome shotgun sequence.
ACCESSION   DASGAC010000369 DASGAC010000000
VERSION     DASGAC010000369.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 306)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 306)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.372"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(116..186)
                     /locus_tag="U1335_002277"
     tRNA            complement(116..186)
                     /locus_tag="U1335_002277"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(152..154),aa:Cys,seq:gca)
BASE COUNT           95 a           61 c           60 g           90 t
ORIGIN      
        1 caaattcgcc ccaaattatt ttcaaagttt gccgaattta acctgatgaa aaaacaaaaa
       61 agcccgattt tacgggcttt gcgttcggtt aattcctgtt aattcaggta caaaaaggcg
      121 gtagacggat ttgaaccgac gatcaagctt ttgcagagcc gtgccttacc acttggctat
      181 accgccataa caaagaatat tgtaccttaa atagtgaatt tggtcaagtg aaaattttcg
      241 aatcagccca atttccagat tttacggtag actagaactt actttgggaa tttggcctgg
      301 cagatt
//
LOCUS       DASGAC010000370          294 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.373, whole genome shotgun sequence.
ACCESSION   DASGAC010000370 DASGAC010000000
VERSION     DASGAC010000370.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 294)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 294)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.373"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            complement(<1..>294)
                     /locus_tag="U1335_002278"
     CDS             complement(<1..>294)
                     /locus_tag="U1335_002278"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM5232676.1"
                     /translation="EGLMRIIKQLVCCIIALVCSLSLPSLLVQAEDTYSIQVGIPLPE
                     HVDAGKLDLSLEAWYLPEGVRETPEQLAEKLYALSRAELSQLYGQAQLSDPMTP"
BASE COUNT           79 a           80 c           71 g           64 t
ORIGIN      
        1 aggagtcatg gggtcagaaa gctgggcttg tccatacagc tgacttagct ccgctcgact
       61 cagggcatag agtttctctg ccagttgctc gggagtctct cgaactccct ccggcagata
      121 ccaggcttca agactcaaat ctagcttgcc cgcatccaca tgctctggca ggggaatgcc
      181 gacctgaata gaataggtat cctctgcttg aaccaaaaga gagggcagag acaacgaaca
      241 gaccagtgca attatgcaac agactagctg tttaataatc ctcatcagac cctc
//
LOCUS       DASGAC010000371          271 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.374, whole genome shotgun sequence.
ACCESSION   DASGAC010000371 DASGAC010000000
VERSION     DASGAC010000371.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 271)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 271)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..271
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.374"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
BASE COUNT           86 a           42 c           54 g           89 t
ORIGIN      
        1 gcaaatattc tctccaaata caaatttgtt caaaaaacag cttagaatta cgtttccaga
       61 aacgttgatt ctaagctgtt ttctatttta tgatttttga ccagggtctg aataacaata
      121 actttggtaa tgtgttttct agacattgat tcgtagcagt tggatggggg gagtttgtca
      181 gacctataga caattccaaa ttgaaaaagg aaagtgtatc aagtacgact ttcaaaagtc
      241 gtcaaagatt ccgattttgg attgccaggg c
//
LOCUS       DASGAC010000372          257 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.375, whole genome shotgun sequence.
ACCESSION   DASGAC010000372 DASGAC010000000
VERSION     DASGAC010000372.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 257)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 257)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..257
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.375"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
BASE COUNT           78 a           71 c           31 g           77 t
ORIGIN      
        1 caaaagaggt atcactttag ttttcactta gataccattc tttctcgtct cctctacggc
       61 agaatcctat tcccatcctc taaacggtct accgttcatt tttcacaaac tctcctagaa
      121 cctaaaactc tggaactcca gcacctctac cgaggattag aaatcattgc caaagaaact
      181 gactttattc aagaacaact ctataaaaac tcaactgcac tttcctctcg taagacagat
      241 gttctctatt acgactg
//
LOCUS       DASGAC010000373          252 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.denovo.376, whole genome shotgun sequence.
ACCESSION   DASGAC010000373 DASGAC010000000
VERSION     DASGAC010000373.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..252
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.denovo.376"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
BASE COUNT           72 a           60 c           40 g           80 t
ORIGIN      
        1 ctaaacttat caatttgaga actctaaaac tattttgaga atgggctact gacactacaa
       61 cttaaggttg tcatacttct aattcaaaca actatagtca cttgaattaa ctttgataca
      121 tcgttacttt cggcttgccg tactctgcag aagtgacttg ctttgcaagt tatatctcca
      181 acctagcaca gccactaggc tgtgctagca gcctgcacct cagttccttg tctgaaagct
      241 aattcattcg ac
//
LOCUS       DASGAC010000374         6074 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.guided.132, whole genome shotgun sequence.
ACCESSION   DASGAC010000374 DASGAC010000000
VERSION     DASGAC010000374.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 6074)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6074)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6074
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.guided.132"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            147..1874
                     /locus_tag="U1335_002279"
     CDS             147..1874
                     /locus_tag="U1335_002279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012027347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5232677.1"
                     /translation="MFRLIFDYIKRHKWLYLLVAVTLIIYDATLLLPTQIIQRMVDIL
                     TKNELTQAILVQEITLLLLVTVLNYATAFIWHLKLFQASVNFKFDMQQRAFKKLVTMR
                     TPFYEKFRSGDVMTRFSTDVDGLMEMVGYGLMIVVYAGGMLAFIIPTMFFIDWKISLV
                     ALLPMLFMTLGIFFIGRKQDKAIDANREAVAQLNNEVLEVIEGIRVTRAYSKKANQKA
                     QFQARTKQLAQGGDRITSLQSLYNPLATVCLGLSTIFVLLMGAQAVKAGQLTLGQVIA
                     LQLYVGSLLEPFWTLADFILVYQTGKTSFEKLQELIETGDDLEADGSKEIAELSSISF
                     KNYSFSYPQAERASLQDINWTLKAGQTVGIVGKTGSGKTTLVRQFLRQYPIGQGNFFI
                     NHQSVLDFKRSSIEEKIGYVPQEHILFSRSVGENIALGKVASSSEEIEQAIATAAFSQ
                     DLKRMTDGLDTMIGERGVSISGGQKQRISIARAFLREPDLLILDDSLSAVDARTERQI
                     IQNIQKERAGKTNVIVTHRLSAVNHADWVLVLDEGRIVEEGRPADLLAQRGWYYEQYQ
                     RQQSQEGGE"
     gene            1874..3613
                     /locus_tag="U1335_002280"
     CDS             1874..3613
                     /locus_tag="U1335_002280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015646585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM5232678.1"
                     /translation="MTILGFLLKQIGRVKWLFIVAVGFYLLASTMVRLAPLLIQQAID
                     GPITDLSKGLPFDEAVFLNQSAQYMGMIILGAIGFYLSMRLLMHCANRIAENLRNQAY
                     DVMQRLPISYFDDKPAGKIATRIVNDTETLRTQFYGTLVNAFNNIVRLLFTYGVLFYM
                     NRSLGWLMLLLIPLYIGIQFAYKKMTDKPMKDFYDARSDVNTQVNETMNGASLIQLFG
                     QEERIMKEFEVTADKMRRADNKIIWAQSLATWNLSGFLQNLVIAAILTVVGYQFLAGQ
                     DGVTAGKLFVYVNYIEGVFIALGALVQQFPNMLRSFETGKRLMALLEEEVEDDCNRIL
                     EVEQGQVVFEHVNFSYEANRPVLKDITIRAEKGETVALVGHTGSGKSSIMNLLYRFYD
                     PQEGRVLIDGKNIRDYSRESLRSHMGIVLQDPYLFTGTIASNVSMNEEEADRTRIMQA
                     LEKVGAGPMLSRLEKGIDEPVVEKGAAFSSGERQLIAFARTLYSDPKILILDEATSHI
                     DTETEEIIQHAMEVVKEGRTTFIIAHRLSTIQNADQILVLDQGRIIEHGKHEELVARG
                     GVYAQMHEIQAKV"
     gene            3667..4362
                     /locus_tag="U1335_002281"
     CDS             3667..4362
                     /locus_tag="U1335_002281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004298754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM5232679.1"
                     /translation="MKALIFDVDDTLYDQIQPFERALERHFEVAREQIEPLYLSFRRY
                     ADEVFEATAIGKMSLKDSHIYRMKHALADFGYQVSDATALAIQIDYDYFQGQIELSPV
                     FPEIFSWCQAQGIAMGIITNGPYRHQLRKIRTMGLVNWFELEHVLISGQVGITKPNPA
                     IFQLMGERLGMSGEDICYLGDSFENDVVGAKAANWKAIWFNHRKRIEPIAPYQADKVV
                     TDWDELVEVIQSF"
     gene            4516..5091
                     /locus_tag="U1335_002282"
     CDS             4516..5091
                     /locus_tag="U1335_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002925829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEM5232680.1"
                     /translation="MEYPMTQDFFPIHTLDTVRPDLKENLETVKKNNGGYIPNLIGLL
                     ANSPTALETYQTVGGINRRNSLTPTEREVVQITAAVANGCGFCVAGHTAISIKQIKMP
                     DEILQALRQGTPIETDAKLDALARFTLAVIHEKGKVEQPLLEEFFQEGYTDENALDVV
                     LGVSLATLCNYANNLINTPINPELQAYALEN"
     gene            5334..6035
                     /locus_tag="U1335_002283"
     CDS             5334..6035
                     /locus_tag="U1335_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HEM5232681.1"
                     /translation="MAIISKEILKEQIKDGIIVSCQALPGEPLYREEGGIMPLLVKAA
                     EEAGAIGIRANSVRDIKEIKEVTNLPIIGIIKRDYPPQEPFITATMKEVDELAELDIA
                     VIALDCTKRERFDGLDIVDFIKQIKEKYPHQLFMADISTYEEGVTAYEAGIDFVGTTL
                     SGYTSYSRQEDGPDIELVDRLCRAGIDVIAEGKIHYPDQVKTIHELGVAGIVVGGAIT
                     RPKEIAERFIQALKK"
BASE COUNT         1789 a         1079 c         1421 g         1785 t
ORIGIN      
        1 ttgtcaactt gccttgatga actccagttc tatcttcgac atcgttttct aggctacttt
       61 tgattttcat tgagtataac gtctatcaat tgttgcttat tgaataaagt ggcaaatgat
      121 aggttataga tttgtaaagg agatatatgt ttcgattaat ttttgactat atcaagcgtc
      181 ataagtggct ctatctattg gttgctgtga ccttgattat ttatgacgcc acacttttgc
      241 taccaacgca aatcatacag cggatggtcg atatactgac caagaatgaa ttaacacagg
      301 ccatattggt tcaggagata accttattgt tattggtaac agtgctgaac tatgcaacag
      361 ccttcatttg gcacctgaaa ttatttcagg cctctgtcaa tttcaagttt gatatgcagc
      421 aacgtgcctt taaaaaatta gtgaccatgc ggactccatt ttatgaaaaa ttccgctcag
      481 gagatgtcat gactcgtttt tcaacggatg tggatggcct gatggagatg gtgggttatg
      541 gtcttatgat tgtcgtctat gcaggcggta tgttggcttt tatcattccc acgatgttct
      601 ttattgattg gaaaatttcg ctagtagctt tactaccgat gctgttcatg acactaggta
      661 tattttttat cgggagaaaa caagataagg cgattgacgc caatagagaa gctgtagccc
      721 agctcaataa tgaagttttg gaggtcatcg aaggcattcg agtgactcga gcttatagta
      781 aaaaagcaaa tcaaaaggct caatttcaag ctcgtaccaa gcaattggct caaggtgggg
      841 atcgcatcac ttccttgcaa tcattgtata atccattagc cacagtctgt ttgggattgt
      901 ctactatttt cgtgcttctc atgggggcac aagccgtgaa agcagggcaa ctgaccttgg
      961 gacaagtaat tgcccttcaa ttgtatgtcg gttcgctttt agagccgttt tggacactag
     1021 cagatttcat ccttgtttat cagactggta agacgtcttt cgaaaaactg caggagctga
     1081 ttgaaacggg tgatgatttg gaggctgatg gttctaagga aattgcagag ctgtctagta
     1141 tttccttcaa aaattatagc tttagttatc cacaggcgga aagagccagc ctacaggaca
     1201 ttaattggac actgaaagca gggcaaactg taggtatcgt tgggaaaact ggttcgggaa
     1261 aaacgacctt ggttcgccaa ttcttacgcc agtatccgat tggtcaggga aattttttca
     1321 tcaatcatca atctgtttta gactttaaac gttctagtat agaggaaaaa attggctatg
     1381 ttccccaaga acacattttg ttttcaaggt ctgttggaga aaatattgcc cttgggaaag
     1441 tagctagtag ctctgaggag attgaacaag ccattgccac agcagctttt agtcaagatt
     1501 taaaacggat gactgatggt cttgacacca tgattggcga gcggggtgtg tctatttctg
     1561 gtggtcagaa acaacggatt tctattgccc gtgctttcct gcgagagcca gatttgctga
     1621 ttctagatga ttctttgtcg gcagtggatg ctcggacaga acgccagatt atccaaaata
     1681 ttcaaaaaga acgtgcagga aaaaccaatg tcatcgtgac ccatcgtcta tctgctgtca
     1741 accatgcaga ttgggtacta gtcttggatg aggggcgtat cgttgaggaa gggcgtccag
     1801 ctgatttgct tgcccaaaga ggttggtact atgaacaata ccaacgacaa caaagccagg
     1861 aaggaggaga gtaatgacta ttttaggttt tttattaaaa caaatcggtc gtgttaagtg
     1921 gctatttata gtagctgtcg gcttctatct attggcttcg accatggttc gattggctcc
     1981 tctgctgatt cagcaggcga ttgatggtcc gattacggat ttgagcaagg gtttgccttt
     2041 tgatgaagct gttttcttaa accagtcagc tcaatacatg ggaatgatta ttctgggagc
     2101 tattggcttc tacctatcta tgcgtttact catgcattgc gccaatcgta ttgctgaaaa
     2161 tctacgtaat caagcctacg atgttatgca acggttgcct atttcttatt ttgatgataa
     2221 gcccgctgga aaaattgcaa ctagaattgt caatgataca gaaactctgc ggacacaatt
     2281 ttatgggacc ttagttaatg cctttaacaa tattgttcgt ttgctcttta catacggtgt
     2341 cctattttac atgaatagga gtcttggttg gctgatgtta ctcttgatac cactctatat
     2401 cggtattcaa tttgcttaca agaaaatgac agacaagccg atgaaggatt tttatgatgc
     2461 aaggagtgac gtcaatacgc aggtgaatga gaccatgaat ggtgcaagtt tgattcaact
     2521 ttttggacaa gaagagcgca tcatgaaaga atttgaagtg actgctgaca agatgcgtcg
     2581 ggcagataat aagattatct gggcccagtc tcttgccacg tggaatctga gtggttttct
     2641 gcaaaatttg gtcattgctg cgattttaac ggtagtcggc tatcagtttc ttgcgggaca
     2701 ggatggagtt acagctggga aactctttgt ttatgtcaac tatatcgaag gagtcttcat
     2761 tgctttggga gcgctggttc aacagttccc aaatatgctt cgctcgtttg aaacaggtaa
     2821 gcgtctaatg gcccttctag aagaagaggt ggaggacgac tgtaatcgta ttttggaagt
     2881 tgaacaaggg caagtcgtgt ttgaacacgt gaactttagc tatgaagcaa acagaccagt
     2941 tttgaaagat attaccattc gggcagaaaa aggagaaaca gttgctctgg ttgggcatac
     3001 tgggtctggt aagtcttcta ttatgaacct cctctatcgt ttctatgatc cacaggaggg
     3061 acgtgtactg attgatggga aaaacatccg cgattattct cgtgaaagcc tgcgcagtca
     3121 catggggatt gttttgcaag atccctatct ctttacaggg acgattgcca gcaatgtttc
     3181 catgaatgaa gaggaagcag atagaacaag aatcatgcag gcgctagaaa aagttggtgc
     3241 agggcctatg ctatctcgct tagagaaagg gattgatgaa ccggttgttg agaagggggc
     3301 ggccttttca agtggggaac gtcagttgat tgcctttgcg cggacactct actctgatcc
     3361 taaaattctg atattggatg aagcaacttc tcatattgat acggagacgg aagaaattat
     3421 ccaacatgct atggaagtgg tgaaagaagg tcggacaacc tttatcattg cccaccgact
     3481 ttctaccatt caaaatgcag accagattct tgtcttagat caaggtcgaa ttattgaaca
     3541 tgggaagcat gaagaattgg ttgcacgtgg tggagtatat gctcaaatgc atgagattca
     3601 agcaaaggtg taataagcag ttaaaaattc caagctttgg ctggaatttt ttgctataat
     3661 tgactcatga aagccttaat ttttgatgta gatgatacgc tttatgatca gattcaaccg
     3721 tttgaacgtg ctttggaaag acattttgaa gtagcaaggg agcaaattga accactctac
     3781 ctttcctttc gcagatatgc ggatgaagta tttgaagcga cagcaattgg aaagatgagt
     3841 ctgaaagaca gtcatattta tcggatgaaa catgctctgg cagattttgg gtatcaggtg
     3901 tctgatgcaa cagccttagc tattcaaata gattatgatt attttcaagg gcagatagag
     3961 ctcagtccag tgtttccaga gatattttca tggtgtcagg cgcaaggaat tgcaatgggg
     4021 attattacga atggacctta tagacatcag ttgagaaaga tacgcacgat ggggttagtt
     4081 aattggtttg agctagaaca tgtcctaatt tctggacaag ttggtatcac aaagccaaat
     4141 cctgctattt ttcaactaat gggagaacgt ttggggatgt caggcgaaga tatttgttat
     4201 ttaggagatt cgtttgaaaa tgatgtggta ggagcgaaag ctgcgaattg gaaggcaatt
     4261 tggtttaatc atagaaagag aatagagcca atagctccgt atcaggcaga taaagtggtg
     4321 acagattggg atgaactggt cgaagttatc cagtctttct agtggtttct gcaagggatt
     4381 atcaattttt tataggtgtg ataggtaaaa tatattagta gaatacctgt ctttatgata
     4441 gcataaaatg taagcataga agtataggtg tgaatccaag cagattttta ttcctactct
     4501 atgaaatttt ttgaaatgga gtatcctatg acacaagatt ttttcccaat tcataccttg
     4561 gacactgtta gacctgattt gaaagaaaat ttggaaacgg tcaagaaaaa taacggtggc
     4621 tacattccca atttaatagg tcttttggcc aattctccaa cagccttgga aacctatcag
     4681 acagtcggtg gcatcaaccg tcgtaatagt ctaacaccga ctgaacgcga agtagtacaa
     4741 attacagcag cggttgctaa tggttgcggc ttctgtgtag ctggtcacac tgctatatct
     4801 atcaagcaaa tcaagatgcc ggatgagatt ttgcaggctc ttcgtcaggg gacaccaatc
     4861 gaaacggatg ccaaattaga tgctctcgct cgatttactc tggctgttat ccatgaaaaa
     4921 ggcaaggttg aacagccctt gctagaggaa tttttccaag agggctacac ggatgaaaat
     4981 gccttggatg tggtgttagg agtcagtctt gcaactcttt gtaattatgc caacaatctc
     5041 atcaacactc ctatcaatcc agaattacag gcctatgctt tggagaattg agtaaataga
     5101 atagagtaaa aaccagtcgg aaaaatcggc tggtttttca gttctaacaa gtgaaactat
     5161 ttttataaaa aagttagaaa atagaaagta gtttcaaaaa atcccctttt ctttcttcag
     5221 gcagaaatta aaatttaaat gtaaaagtct attgaaaaaa catcagtata ttatataatt
     5281 atattgtaag cgctatcttg gatccaatag tagaacggtg caaggagaat taaatggcga
     5341 tcataagcaa agaaatctta aaagagcaga ttaaagatgg cattattgtt tcctgtcagg
     5401 ccttacctgg tgaacccttg tatagggaag aaggggggat tatgccttta cttgtaaagg
     5461 cggcagaaga agcaggtgct ataggtattc gagcaaacag tgttcgagat attaaagaaa
     5521 tcaaggaagt gaccaattta ccaattatcg gaattatcaa gagagattac cctcctcaag
     5581 agcctttcat tacggcaacg atgaaagagg ttgatgagct agctgagcta gacattgcag
     5641 ttattgccct ggattgtact aaacgtgagc ggtttgatgg tctggacatc gttgatttca
     5701 tcaagcaaat caaggaaaaa tatccacacc aactcttcat ggcagatatt tctacctatg
     5761 aagaaggtgt gacagcctac gaggcaggta ttgattttgt tggaacgacc ctatcaggct
     5821 acacatctta tagccgacaa gaagatggac cggatattga gctggttgac cgactttgtc
     5881 gtgctgggat tgatgtcatc gcagaaggaa aaatccacta tccagatcaa gtcaaaacca
     5941 ttcacgagtt gggcgtagcg ggtattgtcg ttggcggagc cattacccgt cctaaggaaa
     6001 tagcagagcg gtttatccag gctctgaaaa aatagttaca tagtccaata accccatatg
     6061 gggaagcaaa aaaa
//
LOCUS       DASGAC010000375         5043 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.guided.148, whole genome shotgun sequence.
ACCESSION   DASGAC010000375 DASGAC010000000
VERSION     DASGAC010000375.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 5043)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5043)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5043
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.guided.148"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            1..738
                     /gene="erm(B)"
                     /locus_tag="U1335_002284"
     CDS             1..738
                     /gene="erm(B)"
                     /locus_tag="U1335_002284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011018369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(B)"
                     /protein_id="HEM5232682.1"
                     /translation="MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLT
                     TKLAKISKQVTSIELDSHLFNLSSEKLKLNSRVTLIHQDILQFQFPNKQRYKIVGNIP
                     YHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDIHRTLGLLLHTQVSIQQLLKLPAE
                     CFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQFHQAMKHA
                     KVNNLSTVTYEQVLSIFNSYLLFNGRK"
     gene            complement(870..1805)
                     /locus_tag="U1335_002285"
     CDS             complement(870..1805)
                     /locus_tag="U1335_002285"
                     /inference="COORDINATES: protein motif:HMM:NF024244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM5232683.1"
                     /translation="MADKEIKPKGRWAKKKASKKKNLSKPSYRKTGRLRLQGMLKAGL
                     GTKRSKDKAEADTKDKIYSKRTFTTYKNQFRYFADWLEVAHPEAVSIEDALGYVDEYL
                     QHLIDIKRSAYSIATAKAALAKVFGVEATQFIATPPRLRANVKRSRDEVKRDKHISKK
                     KEEALARFTSATGLRRAEMQRIEAEDLFFENGKAWLKVEKGTKGGKPRKVEICGKTEA
                     ETRDLVNWIQSKKGRLFPKLSSNYDNHSYRASYAMRMYKKYIRNLDKLSRKEKYYMRG
                     DRAGEVFDRYAMKIVSENLGHNRITVIAQSYLYTD"
     gene            complement(2452..3507)
                     /locus_tag="U1335_002286"
     CDS             complement(2452..3507)
                     /locus_tag="U1335_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002303407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HEM5232684.1"
                     /translation="MKSNEIQVLDPTQRREKGDKGIVINEWEKLTAPSNRRLTHQNLR
                     FLFSLSWSIDRITIVGNLKEFEFDHTFVTEDGEIFYREGEKFTLNQAMPLLASEEAAE
                     RAGNGWRLLDKYGENIAYVETLPFKDPNTGKEKGRIDFNPNKIESFLKTDLKSFISMM
                     FDNPHFSRADVACDILDLPDDYVSQYRLVDAVSFRPYYGMNGALETAYWGARSSERQV
                     RMYNKKLEQEKHRQIVPEEVQSWWRLELQLRRSKADEWSGVVNETLDSFYSPFYFPSD
                     ISFREKAILRGLHADHSLWSEASDNTKRKYRKLSKRIAKEDELTQHLKASFSENIDTL
                     KRELETWLGFMKVDEEE"
     gene            complement(3595..3915)
                     /locus_tag="U1335_002287"
     CDS             complement(3595..3915)
                     /locus_tag="U1335_002287"
                     /inference="COORDINATES: protein motif:HMM:NF016876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM5232685.1"
                     /translation="MDYKIKYAEGALKDLDKIYDFVSNVSVSGAKNIVNKIRSKVNNL
                     AFMPSGFDFDDRIGRRLHDSFKTEAIISGDYLILFVVDEKNKEVIITHFISSKSNYMR
                     LLKK"
     gene            complement(3905..4189)
                     /locus_tag="U1335_002288"
     CDS             complement(3905..4189)
                     /locus_tag="U1335_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002940756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HEM5232686.1"
                     /translation="MMTTALKNVAFKMDSDTLDLASEVIKENGYNLNKVMRLYLKNVA
                     ITKKIDLPTEEELDNEFLFMQLKSEVKQRVSDVQNGKYYSDSDLVERYGL"
     gene            4664..4747
                     /locus_tag="U1335_002289"
                     /pseudo
     CDS             4664..4747
                     /locus_tag="U1335_002289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000527320.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-binding protein"
     gene            4796..4879
                     /locus_tag="U1335_002290"
     CDS             4796..4879
                     /locus_tag="U1335_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001814874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA methyltransferase attenuation leader
                     peptide"
                     /protein_id="HEM5232687.1"
                     /translation="MLVFKMRNVDKTSTVLKQTKNSDYADK"
BASE COUNT         1509 a         1063 c          772 g         1699 t
ORIGIN      
        1 atgaacaaaa atataaaata ttctcaaaac tttttaacga gtgaaaaagt actcaaccaa
       61 ataataaaac aattgaattt aaaagaaacc gataccgttt acgaaattgg aacaggtaaa
      121 gggcatttaa cgacgaaact ggctaaaata agtaaacagg taacgtctat tgaattagac
      181 agtcatctat tcaacttatc gtcagaaaaa ttaaaactga acagtcgtgt cactttaatt
      241 caccaagata ttctacagtt tcaattccct aacaaacaga ggtataaaat tgttgggaat
      301 attccttacc atttaagcac acaaattatt aaaaaagtgg tttttgaaag ccatgcgtct
      361 gacatctatc tgattgttga agaaggattc tacaagcgta ccttggatat tcaccgaaca
      421 ctagggttgc tcttgcacac tcaagtctcg attcagcaat tgcttaagct gccagcggaa
      481 tgctttcatc ctaaaccaaa agtaaacagt gtcttaataa aacttacccg ccataccaca
      541 gatgttccag ataaatattg gaagctatat acgtactttg tttcaaaatg ggtcaatcga
      601 gaatatcgtc aactgtttac taaaaatcag tttcatcaag caatgaaaca cgccaaagta
      661 aacaatttaa gtaccgttac ttatgagcaa gtattgtcta tttttaatag ttatctatta
      721 tttaacggga ggaaataatt ctatgagtcg cttttgtaaa tttggaaagt tacacgttac
      781 taaagggaat gtagataaat tattattttg tggttgaagt tgagaagaaa aaagcttgca
      841 tttctgcaag cctttttctt tttcttcttt tagtcggtat ataaataaga ttgtgcaatt
      901 actgttattc ggttgtgtcc aagattctcg gacacaatct tcattgcgta acggtcaaaa
      961 acttctccag ctctatcccc tcgcatatag tacttttctt ttctagacag tttatctaaa
     1021 ttcctaatat acttcttata cattcgcatt gcatagctag ctctgtagct atggttatca
     1081 tagttagatg ataactttgg aaacaatctt ccttttttgg attgaatcca attcactaaa
     1141 tctcttgttt ccgcctctgt cttaccacaa atctctactt ttctaggctt accgccttta
     1201 gttccttttt ctactttcaa ccaagccttg ccattttcaa agaaaaggtc ttcggcttct
     1261 attctttgca tttcagccct acgcaagcct gtcgcactcg taaaacgtgc cagggcttct
     1321 tctttcttct tggagatatg cttatcacgt ttcacttcat cacgtgaacg cttgacgtta
     1381 gcacgcaagc gtggaggtgt tgcgatgaat tgagtcgctt caactccaaa cactttggca
     1441 agtgctgcct ttgcagttgc gatagaataa gcagacctct ttatatcaat caaatgttgt
     1501 aagtattcat ccacatagcc tagcgcatct tcaatgctta cggcttctgg atgagctact
     1561 tccaaccagt cagcaaaata acgaaactga tttttgtacg tagtaaaagt tcttttagaa
     1621 tagattttat ctttcgtatc agcttcagct ttatcttttg atcgcttcgt tccaagccct
     1681 gctttcagca tgccttgtaa acgcaagcga cctgtctttc tataacttgg tttagaaaga
     1741 tttttcttct tagacgcttt cttcttagcc cagcgcccct tgggcttgat ttctttatca
     1801 gccatattga cccctttcta tcaaggacat ttctcaatta ttcagacctg tcggtcaaac
     1861 ttcggagcaa atcaatctcc tatgccgagg gctttccctc aatgcgcaac ttttttctac
     1921 tgtctatgcg atgacaaaat gagcaacttt ttaattctat gctatgaata ccatttgaaa
     1981 agttggttct ttaatctgac ttcattgaaa aactcggttt gtgactaatt ccatttcctc
     2041 ttactaaact actaaacttg attcctcatt cccttttttc ctcttctaaa aaattccttt
     2101 ctacacattt tttctttcta ctacatttcc tcaattctat ttttcttttt cctcatgaat
     2161 aacattgcac tattttttcc tctttatctt tatcactgct ctagttcttc aatatcttca
     2221 taccttaatc atgccacaaa aagaaaaaaa taaaaaaacg agttagacaa ttaaacaaca
     2281 agataactgt ttatacgttc attttcgctc gctaccgctc ccaaaataat cgtataaaca
     2341 gttatcggtc aaaggtcgct ccacgctccc aatgacctct tttcgcacga atgcgtgcga
     2401 ttgtctgtgc ttcgcattgc agacaaaaaa aagagagagc agaaaccaaa tctactcctc
     2461 ttcatctact ttcataaatc ctaaccacgt ttccagctct cgcttcaacg tgtctatgtt
     2521 ctctgaaaag ctggctttga gatgttgtgt aagttcatct tcttttgcaa tacgtttaga
     2581 tagcttacga tactttcttt ttgtgttgtc agacgcttca gaccaaagac tatgatctgc
     2641 gtgtaagcca cgcagaatag ccttttctct aaagctaatg tctgacggaa aatagaaagg
     2701 cgagtaaaaa gaatctagcg tttcatttac tactccgctc cactcatccg ctttgcttct
     2761 tcgtaactgg agctctaatc tccaccacga ttgcacctct tcaggtacaa tctgacggtg
     2821 tttctcttgc tccaatttct tgttatacat tcgaacttgt cgttcggacg aacgtgcgcc
     2881 ccaatacgct gtctctagcg ctccattcat cccataatat ggtctgaatg ataccgcatc
     2941 gactaagcga tattggctca cgtagtcgtc tggtaaatca agaatatcgc aagccacgtc
     3001 agcacgagag aagtgcggat tgtcaaacat cattgatata aacgacttca aatctgtttt
     3061 caaaaagctt tcgattttgt tagggttgaa atcaatccgc cctttctctt tgcctgtgtt
     3121 tgggtctttg aaaggcagag tttcaacgta ggcaatattc tctccgtact tgtccaacaa
     3181 ccgccaccca ttgccagctc gctcggctgc ttcctcactt gctaggagtg gcatagcttg
     3241 attaagcgta aatttctcgc cttctcggta aaaaatctct ccgtcttcgg ttacaaaagt
     3301 atggtcaaat tcaaactctt ttaaattgcc tacgattgta attcggtcaa tagaccaact
     3361 caaagaaaac aaaaaacgca aattttggtg ggttaaccgc ctgttagaag gggcggtcaa
     3421 tttttcccac tcatttataa ctatcccttt atcccctttt tctcttcttt gagtagggtc
     3481 aaggacttga atttcattag atttcatgct ataatctatt caacaaatta agtaattaaa
     3541 ttttctcaga aaagtccaga ttgccgtctg ggcttttcgt ctttgttgac ctttctattt
     3601 ttttaacaac ctcatataat ttgatttcga agaaataaaa tgagtgataa tcacttcttt
     3661 attcttttca tctaccacaa acagaataag ataatctcct gagattatcg cttctgtttt
     3721 gaaactgtca tgcaatctgc gtccaattct atcatcaaaa tcaaaccctg acggcataaa
     3781 agctaaatta ttaactttcg aacgaatctt attgactata ttctttgctc cagaaacgct
     3841 gacatttgaa acaaaatcat agattttgtc caaatctttc agcgctcctt ccgcatattt
     3901 aatcttataa tccatatcgt tctaccaaat cagaatcaga ataatatttt ccattctgta
     3961 catctgaaac cctttgttta acttcactct ttaactgcat aaacaaaaat tcattgtcta
     4021 actcttcttc agttggcaaa tcaattttct tagtaatagc tacattcttc aaatacaatc
     4081 tcatcacttt attaaggtta tatccattct ccttaataac ctcgctagct aaatctaaag
     4141 tatctgaatc cattttaaat gctacatttt tcaatgctgt agtcataata tttcctcctt
     4201 taagtaaact tgttccctcg acacgttaat tatacactaa aataaagtta gtcgcaattc
     4261 ttacctgttc gctgacttat tccaatttcc ttttgactaa aagaaacctt ggccagtcgt
     4321 cctgctgacg tgcctgcccg aaacgctaaa gcctttcggc tcagcccgtc caagcgtact
     4381 tcggcccagc ttttagtcaa aagttttctc ggcataagct cactcctact acttctctcg
     4441 gaagtggtct tttttaggga aatattaacc actctgctaa attttgctaa gaaaaaagtg
     4501 actttatctt tacctgttga atcgaatgac aaactagaaa aaatggcaca aacaggtaac
     4561 ggttattgca ggtgtatttc ttatctatgg gtttaacatg gattttatca ttaaaatcat
     4621 gagtattgtc cgagagtgat tggtcttgcg tatggttaac cctaaagtta tggaaataag
     4681 acttagaagc aaacttaaga gtgtgttgat agtgcattat cttaaaattt tgtataatag
     4741 gaattgaagt taaattagat gctaaaaatt tgtaattaag aaggagggat tcgtcatgtt
     4801 ggtattcaaa atgcgtaatg tagataaaac atctactgtt ttgaaacaga ctaaaaacag
     4861 tgattacgca gataaataaa tacgttagat taattcctac cagtgactaa tcttatgact
     4921 ttttaaacag ataactaaaa ttacaaacaa atcatttaac ttctgtattt atttacagat
     4981 gtaatcactt caggagtgat tacatgaaca aaaatataaa atattctcaa aactttttaa
     5041 cga
//
LOCUS       DASGAC010000376         1603 bp    DNA     linear   BCT 11-DEC-2023
DEFINITION  TPA_asm: Streptococcus suis isolate SS18E0102
            SAMEA8942334-rid19044453.guided.265, whole genome shotgun sequence.
ACCESSION   DASGAC010000376 DASGAC010000000
VERSION     DASGAC010000376.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8942334
            Sequence Read Archive: ERR6131269
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Streptococcus suis
  ORGANISM  Streptococcus suis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 1603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 09-AUG-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001846400.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001846400.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/12/2023 02:45:31
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,291
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,160
            CDSs (with protein)               :: 2,160
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 28 of 75
            Pseudo Genes (incomplete)         :: 45 of 75
            Pseudo Genes (internal stop)      :: 13 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Streptococcus suis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8942334-rid19044453.guided.265"
                     /isolate="SS18E0102"
                     /isolation_source="pig"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1307"
                     /country="Sweden"
                     /collection_date="2018"
     gene            292..>1603
                     /locus_tag="U1335_002291"
     CDS             292..>1603
                     /locus_tag="U1335_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014735628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM5232688.1"
                     /translation="MSLQAGQKVGLVGNNGVGKSTFLKILLGLDRDFAGQIEVKADWA
                     YVPQLQERSSLSGGEQVWKSIQEAFAQRPQLLIMDEPTANLDQEHQEKLIKQIKRYRG
                     SLLVVSHDRHFLNQIASHIWHLEEGSIQVYTGNYEAFVESRRARREGQQQAYEAYQKK
                     VAQLKKAQHERQAKAQKMGKRKKGVSSSEWKVNAMMGSYDSQAKSMAKSAKQLEKRIE
                     RLEKVSQPRKEAHIKMESKGALDTDLHRLFLLQAGQVFVDEVYLFDFPQLGMTFGDKL
                     ALVGSNGTGKTSFVRKLISKELEGYYNPKLKIAYFAQDLINLDEEKTALENVSCTSLQ
                     DRMTILNLLGMLGLSYDKAQQKVANLSGGERVRLSLAKVLLADANLLILDEPTNFLDM
                     AAIEALETFLKEYEGSVLLVSHDQQFVETSVHSQWEIVQACLVKK"
BASE COUNT          505 a          245 c          393 g          460 t
ORIGIN      
        1 acaatccagt ggaatgtttg aagttggaaa taaggaaacg atgtttcctc ttacgtcgta
       61 gtaataaaag ataaactaaa tgactacaca agggataaga ctgctcataa gggcttacta
      121 ttcatgtgac tttttccata gggaaaggtc atgttttgca tggctttttt gcatgcactt
      181 tttgaagaat agaagccctt tttgtgaaga aaagaggtct atatggaagt aatgaaatgt
      241 attcaattag agaaggaatt tgcgggacgt agattgttta caatccagca gttgagcctt
      301 caagctggtc aaaaggttgg tttggttgga aataacggtg ttggtaagtc tacttttttg
      361 aaaatcttac tgggactgga tagggatttt gctggtcaga ttgaggtaaa agcagactgg
      421 gcctatgtac cccagttaca ggaaaggagc tcgctttcag gtggggaaca ggtttggaag
      481 tctattcaag aggcttttgc acaaagacca cagttgttaa tcatggatga accgactgcc
      541 aatctggatc aagaacacca ggaaaagcta atcaaacaaa tcaaacgcta tcgaggtagt
      601 ctactagttg ttagtcatga tcggcatttt ctcaatcaaa tagccagtca catttggcat
      661 ttagaagaag gaagtattca ggtctacaca gggaattacg aggcgtttgt agaaagtcgc
      721 cgggctaggc gagaaggaca gcagcaggcc tatgaagcct atcagaaaaa agtcgctcaa
      781 ctaaaaaaag cccaacatga acgtcaggca aaggctcaga agatggggaa gagaaagaaa
      841 ggtgtttcat cgtctgagtg gaaggttaat gctatgatgg gttcctatga tagtcaagcc
      901 aagtcaatgg ctaagtctgc taaacagtta gagaaaagga ttgagaggtt ggaaaaggtt
      961 agtcagccca gaaaggaggc tcatattaaa atggaatcaa aaggggcctt agatactgat
     1021 ttacatagac tatttctttt gcaagcaggt caagtttttg tggatgaagt gtatctattt
     1081 gattttcctc aacttggcat gacttttggg gataaactag ctttggttgg gtcaaatggt
     1141 actgggaaaa caagttttgt taggaaattg atttcaaaag aattagaagg ctattacaat
     1201 ccaaaattaa aaattgctta ttttgcacag gatttgataa accttgatga agaaaagact
     1261 gctttagaaa atgttagttg tacttctctt caagatagga tgacgattct caatttatta
     1321 ggtatgttag gactttcata cgataaggct cagcagaagg tagcaaatct gtctggtggt
     1381 gagcgtgttc gtctctcctt agctaaggta ttgttggcgg atgccaatct cttgattttg
     1441 gatgaaccga caaattttct agatatggca gctattgagg ctttggaaac attcttgaaa
     1501 gaatatgaag gtagtgtcct cttggtttcc catgatcaac agtttgtgga aacatctgtt
     1561 cacagtcaat gggagatagt gcaagcttgt ctcgtgaaga aat
//
